BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014573
(422 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255539721|ref|XP_002510925.1| hydrolase, putative [Ricinus communis]
gi|223550040|gb|EEF51527.1| hydrolase, putative [Ricinus communis]
Length = 691
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 283/422 (67%), Positives = 329/422 (77%), Gaps = 6/422 (1%)
Query: 1 MALISFPRFLSRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDH 60
MAL+ FPRFLS P S LR C C S + T++ R+ SA++WFKQDLRVDDH
Sbjct: 1 MALLFFPRFLS-PSPSLRTPPLRFNNPCCFC-SLSPQTTNRRRTSSAILWFKQDLRVDDH 58
Query: 61 LGLVAASKYQ--AVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGR 118
GL+ AS + +++PLYVFDH ILSRYS+EMLE+V+FAL+DLR SLKEQGS+LMIRFG
Sbjct: 59 FGLLQASNHSPSSLLPLYVFDHIILSRYSDEMLEIVLFALQDLRNSLKEQGSNLMIRFGS 118
Query: 119 VENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS-LVDGKPKICLWQTPFYD 177
E VIR+LV+EV+AT VFAEEEVEYHLR + IV + L K +D PKI LWQTPFYD
Sbjct: 119 AEGVIRDLVQEVEATVVFAEEEVEYHLRSTVEIVKQNLTKSQPHLDVNPKIVLWQTPFYD 178
Query: 178 IKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLE 237
IKNL DLP SH+ F+KLQ P+TSPILPPTL +E DWG +PT DELK+FVNE+P+KL+
Sbjct: 179 IKNLKDLPASHDHFKKLQLPVTSPILPPTLPATPMELDWGSMPTLDELKKFVNESPFKLK 238
Query: 238 ESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAV 297
ESW+LI M ETIL +KLSK + + NLN S RKR++ S FVT + N VGGGTN V
Sbjct: 239 ESWSLIKEMPTETILHNKLSKF-RGTDVNLNFNQSQRKRVENSVFVTQRQNFVGGGTNKV 297
Query: 298 LNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAI 357
LNAL AYLRYLEGT RDDWQE+ E+LRNAESRDGASF TLFGP+LCLGIISRR VHYEAI
Sbjct: 298 LNALAAYLRYLEGTARDDWQEVHERLRNAESRDGASFFTLFGPSLCLGIISRRRVHYEAI 357
Query: 358 KFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQ 417
K+EKERNAGFLSPFGYS T+AAAADAVCSMEWYWLM+L+ S G YS RIWRWNGY
Sbjct: 358 KYEKERNAGFLSPFGYSTTTVAAAADAVCSMEWYWLMALKGQISVGGTYSVRIWRWNGYL 417
Query: 418 IQ 419
IQ
Sbjct: 418 IQ 419
>gi|296084158|emb|CBI24546.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/436 (59%), Positives = 323/436 (74%), Gaps = 18/436 (4%)
Query: 1 MALISFPRFLSRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDH 60
M+L++FPRFLS N R R + S A +++ S AV+WFK DLR+DDH
Sbjct: 1 MSLLTFPRFLSFSFSPNTLSFGRPRSRFPLAASKGAESSAIDDS-VAVLWFKHDLRIDDH 59
Query: 61 LGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRV 119
GLVAA S+++ V+PLYVFD RILSR+S+EMLELV+ A+EDLR+SLK+QGS+LMIRFG
Sbjct: 60 PGLVAAASRHRTVIPLYVFDRRILSRFSDEMLELVLVAMEDLRESLKDQGSNLMIRFGSA 119
Query: 120 ENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIK 179
E IRE+V+EVKAT++FAEEEVE+ LR+M+ V ETLA L++ P++ +W TPFYDIK
Sbjct: 120 EKTIREIVKEVKATTIFAEEEVEHELRKMIDTVQETLATAPLLERSPEVVMWHTPFYDIK 179
Query: 180 NLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEES 239
+L LP H++F+KLQ P+TSP+ PP L ++ DWGP+P+ +LK+FVN NP K +E
Sbjct: 180 DLKYLPPLHHDFKKLQLPITSPLGPPRLPSVEIGLDWGPVPSLADLKQFVNGNPSKSKED 239
Query: 240 WTLINNMSAETILTDK--------------LSKLGKR--SKRNLNNQHSPRKRLDKSFFV 283
WT I AE +L + + L R ++ NLN++ + RKRL KS FV
Sbjct: 240 WTSIKETIAEKMLLNDQIDQAEPPNTLIGGMESLKSRGSNRINLNHEQTQRKRLQKSVFV 299
Query: 284 TDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALC 343
T GN VGGGTNAVLNAL AYLRYLEGT RDDWQE+ EKLRNAESRDGASF LFG AL
Sbjct: 300 TSNGNLVGGGTNAVLNALAAYLRYLEGTGRDDWQEVHEKLRNAESRDGASFGILFGSALF 359
Query: 344 LGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNE 403
LGIISRR V++EAIK+EKERNAGFLSPFGYSAATIAAAADAVC+MEWYWLM+L+S S+E
Sbjct: 360 LGIISRRRVYHEAIKYEKERNAGFLSPFGYSAATIAAAADAVCTMEWYWLMALKSQISDE 419
Query: 404 GVYSTRIWRWNGYQIQ 419
G +S RIWRWNGY IQ
Sbjct: 420 GPFSIRIWRWNGYLIQ 435
>gi|359490262|ref|XP_002265202.2| PREDICTED: uncharacterized protein LOC100259267 [Vitis vinifera]
Length = 722
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 254/426 (59%), Positives = 313/426 (73%), Gaps = 30/426 (7%)
Query: 11 SRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKY 69
S+P++ NH S A +S AV+WFK DLR+DDH GLVAA S++
Sbjct: 41 SQPVKHNHNSS-------------KGAESSAIDDSVAVLWFKHDLRIDDHPGLVAAASRH 87
Query: 70 QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEE 129
+ V+PLYVFD RILSR+S+EMLELV+ A+EDLR+SLK+QGS+LMIRFG E IRE+V+E
Sbjct: 88 RTVIPLYVFDRRILSRFSDEMLELVLVAMEDLRESLKDQGSNLMIRFGSAEKTIREIVKE 147
Query: 130 VKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHN 189
VKAT++FAEEEVE+ LR+M+ V ETLA L++ P++ +W TPFYDIK+L LP H+
Sbjct: 148 VKATTIFAEEEVEHELRKMIDTVQETLATAPLLERSPEVVMWHTPFYDIKDLKYLPPLHH 207
Query: 190 EFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAE 249
+F+KLQ P+TSP+ PP L ++ DWGP+P+ +LK+FVN NP K +E WT I AE
Sbjct: 208 DFKKLQLPITSPLGPPRLPSVEIGLDWGPVPSLADLKQFVNGNPSKSKEDWTSIKETIAE 267
Query: 250 TILTDK--------------LSKLGKR--SKRNLNNQHSPRKRLDKSFFVTDKGNTVGGG 293
+L + + L R ++ NLN++ + RKRL KS FVT GN VGGG
Sbjct: 268 KMLLNDQIDQAEPPNTLIGGMESLKSRGSNRINLNHEQTQRKRLQKSVFVTSNGNLVGGG 327
Query: 294 TNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVH 353
TNAVLNAL AYLRYLEGT RDDWQE+ EKLRNAESRDGASF LFG AL LGIISRR V+
Sbjct: 328 TNAVLNALAAYLRYLEGTGRDDWQEVHEKLRNAESRDGASFGILFGSALFLGIISRRRVY 387
Query: 354 YEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRW 413
+EAIK+EKERNAGFLSPFGYSAATIAAAADAVC+MEWYWLM+L+S S+EG +S RIWRW
Sbjct: 388 HEAIKYEKERNAGFLSPFGYSAATIAAAADAVCTMEWYWLMALKSQISDEGPFSIRIWRW 447
Query: 414 NGYQIQ 419
NGY IQ
Sbjct: 448 NGYLIQ 453
>gi|240256063|ref|NP_194259.4| DNA photolyase [Arabidopsis thaliana]
gi|332659635|gb|AEE85035.1| DNA photolyase [Arabidopsis thaliana]
Length = 692
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/419 (55%), Positives = 301/419 (71%), Gaps = 11/419 (2%)
Query: 1 MALISFPRFLSRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDH 60
MA ++ P FL L N R++ +C CC+S +AT++G +AV+WFK DLRVDDH
Sbjct: 1 MAFLALPHFLHLRLRRNDRKN-----RCKCCLS---SATNEG--STAVVWFKHDLRVDDH 50
Query: 61 LGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVE 120
GL+AASK++AV+PLYV D RILSRY+ + LEL I ALEDLRK+LK+QGS+LM+R+G E
Sbjct: 51 PGLLAASKHRAVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLRYGNAE 110
Query: 121 NVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN 180
NVI +LV+EV+A VF EEEVEYHL +++ V L VSL P+I W+TPFY+ +N
Sbjct: 111 NVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQN 170
Query: 181 LNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESW 240
L DLP S EF+KL+ PLT P+ + E WG +PT D+LK+++ E+ W++E SW
Sbjct: 171 LTDLPQSWEEFKKLKLPLTLPVPAAKFSSPGSELQWGSVPTLDDLKDYLKESLWEIENSW 230
Query: 241 TLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNA 300
+ SAE +L ++L L + S + + S K++D S FVT K +TVGGG VLNA
Sbjct: 231 REMAQASAERVLMERLGNLKESSMEPIVDG-SLGKKVDNSVFVTSKRDTVGGGNEVVLNA 289
Query: 301 LQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFE 360
L YLRYLEGT RDDWQE+ +LR+AE+R GASF LFGP LCLGI+SRR VHYEAI++E
Sbjct: 290 LAGYLRYLEGTSRDDWQEVHARLRDAETRPGASFFKLFGPVLCLGIVSRRSVHYEAIEYE 349
Query: 361 KERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQ 419
KERNAGF+SPFGYSAAT++AA DAVCSMEWY+L++L R +E ++ RIWRW GY IQ
Sbjct: 350 KERNAGFISPFGYSAATVSAATDAVCSMEWYYLLALSRERIDEKRHAIRIWRWKGYLIQ 408
>gi|356529875|ref|XP_003533512.1| PREDICTED: uncharacterized protein LOC100813721 [Glycine max]
Length = 654
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/378 (60%), Positives = 295/378 (78%), Gaps = 2/378 (0%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRK 103
+G+A++WFK DLR DDH L+AAS + ++VP+YVFDHRILSR+S+E LELV+ A+EDLRK
Sbjct: 4 TGTAILWFKHDLRTDDHPALLAASAFPSLVPIYVFDHRILSRFSDETLELVLLAVEDLRK 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
SLK++GSDL+IRFG ENVI++L EVKAT VFAE+EVEY LR ++ +V + L VS+
Sbjct: 64 SLKDRGSDLVIRFGNAENVIQQLATEVKATCVFAEQEVEYELRFIIDVVKQRLKSVSVPQ 123
Query: 164 GKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT--LAGAKLEADWGPLPT 221
G P+I LW+TPFYDIK+L +LP S++EF+KL+ +T+P+ L GA++E DWG LP+
Sbjct: 124 GSPRIELWRTPFYDIKDLENLPASYDEFKKLRLSVTTPLQLSVSKLPGAEIELDWGVLPS 183
Query: 222 FDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSF 281
+D++K F+ N K E W+L+ SAETIL K+ K G +R+ + + + S
Sbjct: 184 YDDIKGFLTSNQQKSGEKWSLMKETSAETILRRKVLKSGNNIERSSRFGLTQSRERNGSV 243
Query: 282 FVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPA 341
FVT KGN VGG TN VLNAL AYLRYLEGT RDDWQE+ EK+R +ESR+GASF LFGPA
Sbjct: 244 FVTQKGNIVGGSTNNVLNALAAYLRYLEGTARDDWQEVHEKVRASESRNGASFIGLFGPA 303
Query: 342 LCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRS 401
L LGIISRR VHYEAIK+EKERNAGFLSPFGYSAATIAAA DAVCSMEWYWL++L++ ++
Sbjct: 304 LSLGIISRRKVHYEAIKYEKERNAGFLSPFGYSAATIAAAVDAVCSMEWYWLLALKNQKN 363
Query: 402 NEGVYSTRIWRWNGYQIQ 419
N G++STRIW+W G+ IQ
Sbjct: 364 NHGIHSTRIWKWKGFLIQ 381
>gi|147827517|emb|CAN66342.1| hypothetical protein VITISV_024326 [Vitis vinifera]
Length = 1716
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/357 (61%), Positives = 268/357 (75%), Gaps = 16/357 (4%)
Query: 82 ILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+LS +S+EMLELV+ A+EDLR+SLK+QGS+LMIRFG E IRE+V+EVKAT++FAEEEV
Sbjct: 1129 LLSXFSDEMLELVLVAMEDLRESLKDQGSNLMIRFGSAEKTIREIVKEVKATTIFAEEEV 1188
Query: 142 EYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSP 201
E+ LR+M+ V ETLA L++ P++ +W TPFYDIK+L LP H++F+KLQ P+TSP
Sbjct: 1189 EHELRKMIDTVQETLATAPLLERSPEVVMWHTPFYDIKDLKYLPPLHHDFKKLQLPITSP 1248
Query: 202 ILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDK------ 255
+ PP L ++ DWGP+P+ +LK+FVN NP K +E WT I AE +L +
Sbjct: 1249 LGPPRLPSVEIGLDWGPVPSLADLKQFVNGNPSKSKEDWTSIKETIAEKMLLNDQIDQAE 1308
Query: 256 --------LSKLGKRSKR--NLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYL 305
+ L R NLN++ + RKRL KS FVT GN V GGTNAVLNAL AYL
Sbjct: 1309 PPNTLIGGMESLKSRGSNXINLNHEQTQRKRLQKSVFVTSXGNLVXGGTNAVLNALAAYL 1368
Query: 306 RYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
RYLEGT RDDWQE+ EKLRNAESRDGASF LFG AL LGIISRR V++EAIK+EKERNA
Sbjct: 1369 RYLEGTGRDDWQEVHEKLRNAESRDGASFGILFGSALFLGIISRRRVYHEAIKYEKERNA 1428
Query: 366 GFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQVHS 422
GFLSPFGYSAATIAAAADAVC+MEWYWLM+L+S S+EG +S RIWRWNGY IQ +
Sbjct: 1429 GFLSPFGYSAATIAAAADAVCTMEWYWLMALKSQISDEGPFSIRIWRWNGYLIQAKA 1485
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 11 SRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLV-AASKY 69
S+P++ +H R RSR+ A +S AV+WFK DLR+DDH GLV AAS++
Sbjct: 923 SQPVKHSHNRGPRSRFPLAAS---KGAESSAIDDSVAVLWFKHDLRIDDHPGLVAAASRH 979
Query: 70 QAVVPLYVFDHRILSR 85
+ V+PLYVFD RILSR
Sbjct: 980 RTVIPLYVFDRRILSR 995
>gi|449488669|ref|XP_004158137.1| PREDICTED: uncharacterized LOC101210685 [Cucumis sativus]
Length = 679
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 275/378 (72%), Gaps = 11/378 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
AV+WFK DLR+ DH L AAS ++ +++PLY+FD RILSR+S++MLE+++ ALE LR SL
Sbjct: 43 AVLWFKHDLRIHDHPALHAASSQFSSLIPLYIFDSRILSRFSDQMLEILLLALESLRHSL 102
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
+++G DL+I+FG E+++RELV +VKAT VFAEEEVE+ L +M V +TL S +
Sbjct: 103 RDRGLDLLIKFGDAESILRELVVQVKATHVFAEEEVEHELCLLMDDVSQTL---STLIRS 159
Query: 166 PKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
P + +W+TPFYDIK++ LP S++EFRKLQ P+T P+ PTL ++E DWG +PTFD L
Sbjct: 160 PDLTIWRTPFYDIKSVESLPESYDEFRKLQLPVTCPLSSPTLPCLEMELDWGTMPTFDAL 219
Query: 226 KEFVNENPWKLEE---SWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFF 282
KEF+N +L E W I N +AET++ K SK G ++ N +++ S +R+ S F
Sbjct: 220 KEFMNST--RLNEPSDEWYSIKNTTAETMVRAKFSKRGN-NENNPSSRESRTERMRNSIF 276
Query: 283 VTDKG-NTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPA 341
T +G N + GGT VLNAL AY+RY EGT RDDWQ L E +RN+ESRDGASF LFGPA
Sbjct: 277 TTQRGKNFMMGGTEGVLNALAAYIRYNEGTSRDDWQALHEMVRNSESRDGASFIKLFGPA 336
Query: 342 LCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRS 401
+ LGIIS+R HYEAIK+EKERNAGFLSPFGYSA ++AAA DAV S EWYWLM L+S
Sbjct: 337 IHLGIISKRKAHYEAIKYEKERNAGFLSPFGYSARSVAAAVDAVLSSEWYWLMGLKSKGR 396
Query: 402 NEGVYSTRIWRWNGYQIQ 419
G YS R WRWNG+ +Q
Sbjct: 397 RLGSYSYRNWRWNGFLVQ 414
>gi|449451936|ref|XP_004143716.1| PREDICTED: uncharacterized protein LOC101210685 [Cucumis sativus]
Length = 679
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 275/378 (72%), Gaps = 11/378 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
AV+WFK DLR+ DH L AAS ++ +++PLY+FD RILSR+S++MLE+++ ALE LR SL
Sbjct: 43 AVLWFKHDLRIHDHPALHAASSQFSSLIPLYIFDSRILSRFSDQMLEILLLALESLRHSL 102
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
+++G DL+I+FG E+++RELV +VKAT VFAEEEVE+ L +M V +TL S +
Sbjct: 103 RDRGLDLLIKFGDAESILRELVVQVKATHVFAEEEVEHELCLLMDDVSQTL---STLIRS 159
Query: 166 PKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
P + +W+TPFYDIK++ LP S++EFRKLQ P+T P+ PTL ++E DWG +PTFD L
Sbjct: 160 PDLTIWRTPFYDIKSVESLPESYDEFRKLQLPVTCPLSSPTLPCLEMELDWGTMPTFDAL 219
Query: 226 KEFVNENPWKLEE---SWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFF 282
KEF+N +L E W I N +AET++ K SK G ++ N +++ S +R+ S F
Sbjct: 220 KEFMNST--RLNEPSDEWYSIKNTTAETMVRAKFSKRGN-NENNPSSRESRTERMGNSIF 276
Query: 283 VTDKG-NTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPA 341
T +G N + GGT VLNAL AY+RY EGT RDDWQ L E +RN+ESRDGASF LFGPA
Sbjct: 277 STQRGKNFMMGGTEGVLNALAAYIRYNEGTSRDDWQALHEMVRNSESRDGASFIKLFGPA 336
Query: 342 LCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRS 401
+ LGIIS+R HYEAIK+EKERNAGFLSPFGYSA ++AAA DAV S EWYWLM L+S
Sbjct: 337 IHLGIISKRKAHYEAIKYEKERNAGFLSPFGYSARSVAAAVDAVLSSEWYWLMGLKSKGR 396
Query: 402 NEGVYSTRIWRWNGYQIQ 419
G YS R WRWNG+ +Q
Sbjct: 397 RLGSYSYRNWRWNGFLVQ 414
>gi|212275864|ref|NP_001130328.1| uncharacterized protein LOC100191423 [Zea mays]
gi|195612420|gb|ACG28040.1| deoxyribodipyrimidine photolyase family protein [Zea mays]
gi|414886442|tpg|DAA62456.1| TPA: deoxyribodipyrimidine photolyase family protein [Zea mays]
Length = 706
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/436 (47%), Positives = 274/436 (62%), Gaps = 21/436 (4%)
Query: 1 MALISFPRFLSRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDH 60
MAL++ P +HRR LR+R + V V+ A + +AV+WFK DLR+DDH
Sbjct: 1 MALLALRFGPLLPAPPHHRRVLRNRCR-VRIVASNAPTPVRDGGAAAVVWFKHDLRIDDH 59
Query: 61 LGLVAA--SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGR 118
GL AA + VVPLYVFD RIL+ YS++MLEL++FAL+DL+ +LK Q SDL+I G
Sbjct: 60 PGLAAAVSEPRRPVVPLYVFDRRILAGYSDKMLELLLFALKDLKMTLKSQDSDLLIGLGN 119
Query: 119 VENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP-KICLWQTPFYD 177
E+V+ +LV EV+A VF EEEVEY +R ++A V+ +L+ S G P KI W P YD
Sbjct: 120 AEDVVLKLVNEVQAGLVFTEEEVEYRVRDVLANVESSLSNGSFSWGSPPKIVAWSAPLYD 179
Query: 178 IKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNE-NPWKL 236
KNL +P SH++F K + PL +P+ TL LE D G LPT +ELK F+ E P
Sbjct: 180 YKNLGAVPTSHDDFLKKKLPLATPLAAATLPALNLELDTGSLPTLEELKCFLKEITP--- 236
Query: 237 EESWTLINNMSAETILTDKLSKLGKRSKRNLN-------------NQHSPRKRLDKSFFV 283
E++W + M A +IL +S+ +S L+ + + KR+ S F
Sbjct: 237 EDNWAPLKRMPARSILKRTISQRKIKSNATLSTINEENIDDAATMDSVASGKRIINSKFA 296
Query: 284 TDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALC 343
++ V GGT L+AL AYL+YLEGT WQEL +K+R AE+R GASF LFGPA+
Sbjct: 297 SENSLEVSGGTEITLDALAAYLKYLEGTGNASWQELHDKVRLAETRYGASFYILFGPAIQ 356
Query: 344 LGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNE 403
LG+ISRR + E I++EK+RNAGFLSPFGYS T+ +A DA+CSMEWYWL++ +S E
Sbjct: 357 LGVISRRKAYTETIQYEKDRNAGFLSPFGYSTPTVTSAVDAICSMEWYWLLASKSQVCIE 416
Query: 404 GVYSTRIWRWNGYQIQ 419
G YS RIWRW GY +Q
Sbjct: 417 GKYSIRIWRWKGYLVQ 432
>gi|115480339|ref|NP_001063763.1| Os09g0532700 [Oryza sativa Japonica Group]
gi|52075945|dbj|BAD46025.1| deoxyribodipyrimidine photolyase family protein-like [Oryza sativa
Japonica Group]
gi|52077228|dbj|BAD46272.1| deoxyribodipyrimidine photolyase family protein-like [Oryza sativa
Japonica Group]
gi|113631996|dbj|BAF25677.1| Os09g0532700 [Oryza sativa Japonica Group]
Length = 695
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 187/387 (48%), Positives = 252/387 (65%), Gaps = 15/387 (3%)
Query: 50 WFKQDLRVDDHLGL---VAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
WFK DLRVDDH GL VAA + V+PLYVFD RIL YS+ MLEL++FALEDL+ LK
Sbjct: 49 WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILDGYSDTMLELLLFALEDLKMVLK 108
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP 166
Q SDL+I G E+V+ +LV EV+A +F EEEVEY +R ++A V+ +L+ S + G P
Sbjct: 109 SQESDLLIGLGNAEDVVLKLVNEVQAGLIFTEEEVEYRVRNVLASVESSLSNASFLSGNP 168
Query: 167 -KICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
+I +W YD KN +L SHN+F K + P+ +P+ P+L +E + G LPT +EL
Sbjct: 169 PEIVVWSASLYDYKNPRELSTSHNQFLKEKLPMNTPLAAPSLPALNIEIETGSLPTLEEL 228
Query: 226 KEFVNENPWKLEESWTLINNMSAETILTDKLS----KLGKRSKRNLNNQHSPR------K 275
K F+ E+ E +W + SA +IL LS K G S + + + +
Sbjct: 229 KGFLKESRTS-ENNWVPLKGTSARSILKKTLSQINVKTGVASSGSDGGEDTTAYYAMSGR 287
Query: 276 RLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFA 335
++ S F ++ V GGT L+AL AYL+YLEGT + WQEL +K+R E+RDGASF
Sbjct: 288 KIQNSMFTSESSTEVRGGTEITLDALAAYLKYLEGTGKASWQELHDKVRLTETRDGASFC 347
Query: 336 TLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMS 395
TLFGPAL LG+IS+R V++E I++E++RNAGF+SPFGYS T+ AA DA+CSMEWYWL++
Sbjct: 348 TLFGPALQLGVISKRRVYHETIQYERDRNAGFISPFGYSTPTVTAAVDAICSMEWYWLLA 407
Query: 396 LRSLRSNEGVYSTRIWRWNGYQIQVHS 422
L+S EG Y RIWRW G+ IQ S
Sbjct: 408 LKSQVCIEGNYPVRIWRWKGHLIQYTS 434
>gi|222641972|gb|EEE70104.1| hypothetical protein OsJ_30114 [Oryza sativa Japonica Group]
Length = 741
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 184/427 (43%), Positives = 251/427 (58%), Gaps = 55/427 (12%)
Query: 50 WFKQDLRVDDHLGL---VAASKYQAVVPLYVFDHRILSR--------------------- 85
WFK DLRVDDH GL VAA + V+PLYVFD RIL
Sbjct: 49 WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILDDASKWREQLLFSPNFLRRPAPP 108
Query: 86 -------------------YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIREL 126
YS+ MLEL++FALEDL+ LK Q SDL+I G E+V+ +L
Sbjct: 109 LSGMCQIMKVLIGMDEIKGYSDTMLELLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKL 168
Query: 127 VEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP-KICLWQTPFYDIKNLNDLP 185
V EV+A +F EEEVEY +R ++A V+ +L+ S + G P +I +W YD KN +L
Sbjct: 169 VNEVQAGLIFTEEEVEYRVRNVLASVESSLSNASFLSGNPPEIVVWSASLYDYKNPRELS 228
Query: 186 VSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINN 245
SHN+F K + P+ +P+ P+L +E + G LPT +ELK F+ E+ E +W +
Sbjct: 229 TSHNQFLKEKLPMNTPLAAPSLPALNIEIETGSLPTLEELKGFLKESRTS-ENNWVPLKG 287
Query: 246 MSAETILTDKLSKLGKRSKRNLNNQHSPR----------KRLDKSFFVTDKGNTVGGGTN 295
SA +IL LS++ ++ + +++ S F ++ V GGT
Sbjct: 288 TSARSILKKTLSQINVKTGVASSGSDGGEDTTAYYAMSGRKIQNSMFTSESSTEVRGGTE 347
Query: 296 AVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYE 355
L+AL AYL+YLEGT + WQEL +K+R E+RDGASF TLFGPAL LG+IS+R V++E
Sbjct: 348 ITLDALAAYLKYLEGTGKASWQELHDKVRLTETRDGASFCTLFGPALQLGVISKRRVYHE 407
Query: 356 AIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNG 415
I++E++RNAGF+SPFGYS T+ AA DA+CSMEWYWL++L+S EG Y RIWRW G
Sbjct: 408 TIQYERDRNAGFISPFGYSTPTVTAAVDAICSMEWYWLLALKSQVCIEGNYPVRIWRWKG 467
Query: 416 YQIQVHS 422
+ IQ S
Sbjct: 468 HLIQYTS 474
>gi|4454017|emb|CAA23070.1| hypothetical protein [Arabidopsis thaliana]
gi|7269380|emb|CAB81340.1| hypothetical protein [Arabidopsis thaliana]
Length = 581
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 185/390 (47%), Positives = 245/390 (62%), Gaps = 54/390 (13%)
Query: 1 MALISFPRFLSRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDH 60
MA ++ P FL L N R++ +C CC+S +AT++G +AV+WFK DLRVDDH
Sbjct: 1 MAFLALPHFLHLRLRRNDRKN-----RCKCCLS---SATNEG--STAVVWFKHDLRVDDH 50
Query: 61 LGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVE 120
GL+AASK++AV+PLYV D RILSRY+ + LEL I ALEDLRK+LK+QGS+LM+R+G E
Sbjct: 51 PGLLAASKHRAVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLRYGNAE 110
Query: 121 NVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN 180
NVI +LV+EV+A VF EEEVEYHL +++ V L VSL P+I W+TPFY+ +N
Sbjct: 111 NVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKLEGVSLSGESPRIVAWRTPFYESQN 170
Query: 181 LNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESW 240
L DLP S EF+KL+ PLT P+ + E WG +PT D+LK+++ E+ W++E SW
Sbjct: 171 LTDLPQSWEEFKKLKLPLTLPVPAAKFSSPGSELQWGSVPTLDDLKDYLKESLWEIENSW 230
Query: 241 TLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNA 300
+ SAE +L ++L L + S + + S K++D S FVT K +TVGGG VLNA
Sbjct: 231 REMAQASAERVLMERLGNLKESSMEPIVDG-SLGKKVDNSVFVTSKRDTVGGGNEVVLNA 289
Query: 301 LQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFE 360
L YL RR VHYEAI++E
Sbjct: 290 LAGYL-------------------------------------------RRSVHYEAIEYE 306
Query: 361 KERNAGFLSPFGYSAATIAAAADAVCSMEW 390
KERNAGF+SPFGYSAAT++AA DAVCSME+
Sbjct: 307 KERNAGFISPFGYSAATVSAATDAVCSMEY 336
>gi|357159624|ref|XP_003578506.1| PREDICTED: uncharacterized protein LOC100826912 [Brachypodium
distachyon]
Length = 706
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/388 (46%), Positives = 253/388 (65%), Gaps = 16/388 (4%)
Query: 50 WFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
WFK DLR+DDH GLVAA + + VVPLYVFD RIL+ YS+ MLEL++FAL+DL+ LK
Sbjct: 47 WFKHDLRIDDHPGLVAACAERRRPVVPLYVFDRRILAGYSDTMLELLLFALKDLKLVLKS 106
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP- 166
Q SDL+I G E+V+ +LV EV+A ++ EEEVE+ +R ++A V+ +L+K S G+P
Sbjct: 107 QESDLLIGLGNAEDVVLKLVNEVQAGVIYTEEEVEHSVRIVLANVESSLSKGSFAWGEPP 166
Query: 167 KICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELK 226
+ +W P YD K+L L S N+F K + + +P+ PT +E+ G LPT +ELK
Sbjct: 167 DMEVWSAPLYDYKSLRGLSTSRNQFLKDKLSMAAPVASPTFPALSVESYTGSLPTLEELK 226
Query: 227 EFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN------------NQHSPR 274
F+ E+ +++W I +MSA +IL L++ +S L N S
Sbjct: 227 VFLEESR-TTQDNWVNIKSMSARSILKANLNRNNVKSNVTLTVDNGGNVEDITPNAGSTG 285
Query: 275 KRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASF 334
+++ S F ++ V GGT+ L+AL AYL+YLEGT + +WQEL +K+R AE+RDGASF
Sbjct: 286 RKIMDSMFASESSLQVRGGTDLTLDALAAYLKYLEGTGKANWQELHDKVRFAETRDGASF 345
Query: 335 ATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLM 394
TLFG A+ LG+ISRR V++E I++E++RNAGFLSPFGYS T+ +A DA+CS+EWY L+
Sbjct: 346 YTLFGAAIQLGVISRRRVYHETIQYERDRNAGFLSPFGYSTPTVTSAVDAICSLEWYRLL 405
Query: 395 SLRSLRSNEGVYSTRIWRWNGYQIQVHS 422
+L+S E Y WRW GY IQ S
Sbjct: 406 ALKSQVCIEATYPLNFWRWKGYLIQYTS 433
>gi|218202510|gb|EEC84937.1| hypothetical protein OsI_32152 [Oryza sativa Indica Group]
Length = 741
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 184/427 (43%), Positives = 252/427 (59%), Gaps = 55/427 (12%)
Query: 50 WFKQDLRVDDHLGL---VAASKYQAVVPLYVFDHRILSR--------------------- 85
WFK DLRVDDH GL VAA + V+PLYVFD RIL+
Sbjct: 49 WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILADASKWREQLLFSPNFLRRPAPP 108
Query: 86 -------------------YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIREL 126
YS+ MLEL++FALEDL+ LK Q SDL+I G E+V+ +L
Sbjct: 109 LSGMCQIMKVLIGMDEIKGYSDTMLELLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKL 168
Query: 127 VEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP-KICLWQTPFYDIKNLNDLP 185
V EV+A +F EEEVEY +R ++A V+ +L+ S + G P +I +W YD KN +L
Sbjct: 169 VNEVQAGLIFTEEEVEYRVRNVLASVESSLSNSSFLSGNPPEIVVWSASLYDYKNPRELS 228
Query: 186 VSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINN 245
SHN+F K + P+ +P+ P+L +E + G LPT +ELK F+ E+ E +W +
Sbjct: 229 TSHNQFLKEKLPMNTPLAAPSLPALNIEIETGSLPTLEELKGFLKESRTS-ENNWVPLKG 287
Query: 246 MSAETILTDKLSKLGKRSKRNLNNQHSPR----------KRLDKSFFVTDKGNTVGGGTN 295
SA +IL LS++ ++ + +++ S F ++ V GGT
Sbjct: 288 TSARSILKKTLSQINVKTGVASSGSDGGEDTTAYYAMSGRKIQNSMFTSESSTEVRGGTE 347
Query: 296 AVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYE 355
L+AL AYL+YLEGT + WQEL +K+R E+RDGASF TLFGPAL LG+IS+R V++E
Sbjct: 348 ITLDALAAYLKYLEGTGKASWQELHDKVRLTETRDGASFCTLFGPALQLGVISKRRVYHE 407
Query: 356 AIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNG 415
I++E++RNAGF+SPFGYS T+ AA DA+CSMEWYWL++L+S EG Y RIWRW G
Sbjct: 408 TIQYERDRNAGFISPFGYSTPTVTAAVDAICSMEWYWLLALKSQVCIEGNYPVRIWRWKG 467
Query: 416 YQIQVHS 422
+ IQ S
Sbjct: 468 HLIQYTS 474
>gi|326526437|dbj|BAJ97235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 703
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 182/403 (45%), Positives = 255/403 (63%), Gaps = 18/403 (4%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASK--YQAVVPLYVFDHRILSRYSNEMLE 92
+ +A S G G+AV+WFK DLRVDDH GLVAA + VVPLYVFD RIL+ YS+ LE
Sbjct: 31 SCSAVSDG--GAAVVWFKHDLRVDDHPGLVAACAEPRRPVVPLYVFDSRILAGYSDTRLE 88
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
L++FAL+DL+ +LK Q SDL++ G E+ + +L EV+ ++ EEEVE+ + ++A V
Sbjct: 89 LLLFALKDLKLALKSQRSDLLVGLGNAEDAVLKLANEVQVGVIYTEEEVEHSVCSVLANV 148
Query: 153 DETLAKVSLVDGKP-KICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAK 211
+ +L+ S G P +I W P YD K+L L S N+F + T+ + PTL
Sbjct: 149 ESSLSNGSFTRGNPPEIKFWSAPLYDYKSLRQLSTSRNQFLNDKFSTTTALPTPTLPTLN 208
Query: 212 LEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNN-- 269
+E D G LPT +ELK F+ E+ +++W I SA +IL L + +S +LN+
Sbjct: 209 VEIDTGSLPTLEELKVFLKESRMA-QDNWVPIKRTSARSILKAALIQRKIKSNVSLNDGD 267
Query: 270 ----------QHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQEL 319
+ +++ S F ++ V GGT+ L+AL AYL+YLEGT + WQEL
Sbjct: 268 GGNIEDITTSTGASGRKIAGSMFASESSLEVRGGTDITLDALDAYLKYLEGTGKASWQEL 327
Query: 320 QEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIA 379
+K+R AE+RDGASF TLFG A+ LG+ISRR + E I++E++RNAGFLSPFGYS T+
Sbjct: 328 HDKVRFAETRDGASFRTLFGNAIQLGVISRRRAYQETIQYERDRNAGFLSPFGYSTPTVT 387
Query: 380 AAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQVHS 422
+A DA+CS+EWYWL++L+S S EG Y + WRW GY IQ S
Sbjct: 388 SAVDAICSLEWYWLLALKSQVSIEGNYPLKFWRWKGYLIQYTS 430
>gi|326524207|dbj|BAJ97114.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 703
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 182/403 (45%), Positives = 255/403 (63%), Gaps = 18/403 (4%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASK--YQAVVPLYVFDHRILSRYSNEMLE 92
+ +A S G G+AV+WFK DLRVDDH GLVAA + VVPLYVFD RIL+ YS+ LE
Sbjct: 31 SCSAVSDG--GAAVVWFKHDLRVDDHPGLVAACAEPRRPVVPLYVFDSRILAGYSDTRLE 88
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
L++FAL+DL+ +LK Q SDL++ G E+ + +L EV+ ++ EEEVE+ + ++A V
Sbjct: 89 LLLFALKDLKLALKSQRSDLLVGLGNAEDAVLKLANEVQVGVIYTEEEVEHSVCSVLANV 148
Query: 153 DETLAKVSLVDGKP-KICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAK 211
+ +L+ S G P +I W P YD K+L L S N+F + T+ + PTL
Sbjct: 149 ESSLSNGSFTRGNPPEIKFWSAPLYDYKSLRQLSTSRNQFLNDKFSTTTALPTPTLPTLN 208
Query: 212 LEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNN-- 269
+E D G LPT +ELK F+ E+ +++W I SA +IL L + +S +LN+
Sbjct: 209 VEIDTGSLPTLEELKVFLKESRMA-QDNWVPIKRTSARSILKAALIQRKIKSNVSLNDGD 267
Query: 270 ----------QHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQEL 319
+ +++ S F ++ V GGT+ L+AL AYL+YLEGT + WQEL
Sbjct: 268 GGNIEDITTSTGASGRKIAGSMFASESSLEVRGGTDITLDALDAYLKYLEGTGKASWQEL 327
Query: 320 QEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIA 379
+K+R AE+RDGASF TLFG A+ LG+ISRR + E I++E++RNAGFLSPFGYS T+
Sbjct: 328 HDKVRFAETRDGASFRTLFGNAIQLGVISRRRAYQETIQYERDRNAGFLSPFGYSTPTVT 387
Query: 380 AAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQVHS 422
+A DA+CS+EWYWL++L+S S EG Y + WRW GY IQ S
Sbjct: 388 SAVDAICSLEWYWLLALKSQVSIEGNYPLKFWRWKGYLIQYTS 430
>gi|297799464|ref|XP_002867616.1| deoxyribodipyrimidine photolyase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313452|gb|EFH43875.1| deoxyribodipyrimidine photolyase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 557
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 178/390 (45%), Positives = 240/390 (61%), Gaps = 58/390 (14%)
Query: 1 MALISFPRFLSRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDH 60
MAL++ P F+ L N +C CC+S +AT++G +AV+WFK DLRVDDH
Sbjct: 1 MALLALPHFIPHRLRRN---------QCRCCLS---SATNEG--STAVVWFKHDLRVDDH 46
Query: 61 LGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVE 120
GL+A+SK+ +V+PLYV D RILSRY+ + LEL I ALEDLRK+LK+QGS+LM+ +G E
Sbjct: 47 PGLLASSKHSSVIPLYVLDRRILSRYTTDTLELAIIALEDLRKTLKKQGSNLMLSYGNAE 106
Query: 121 NVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN 180
NVI +LV+EV+A SVF EEEVEYHL ++ V + L SL +P+I W+TPFY+ +N
Sbjct: 107 NVIADLVKEVRAHSVFVEEEVEYHLCDVLDGVKKKLEGFSLSGEQPRIVFWRTPFYESQN 166
Query: 181 LNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESW 240
L DLP S EF+KL+ P++ P+ + E WG +PT D+LK+++ E+ + E SW
Sbjct: 167 LTDLPQSWEEFKKLKLPISLPVPAARFSSPGSELQWGSVPTLDDLKDYLKESLCEKENSW 226
Query: 241 TLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNA 300
+ SAE +L ++L L + S + + S K++D S FVT K +TVGGG AVLNA
Sbjct: 227 REMAEASAERVLMERLGNLKESSMEPIVDG-SLGKKVDNSAFVTSKRDTVGGGNEAVLNA 285
Query: 301 LQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFE 360
L YL RR VHYEAI++E
Sbjct: 286 LAGYL-------------------------------------------RRSVHYEAIEYE 302
Query: 361 KERNAGFLSPFGYSAATIAAAADAVCSMEW 390
KERNAGF+SPFGYSAAT++AA DAV SME+
Sbjct: 303 KERNAGFISPFGYSAATVSAATDAVRSMEY 332
>gi|224136770|ref|XP_002322411.1| predicted protein [Populus trichocarpa]
gi|222869407|gb|EEF06538.1| predicted protein [Populus trichocarpa]
Length = 446
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/174 (72%), Positives = 142/174 (81%)
Query: 246 MSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYL 305
MS+ETIL +LSK GK S N N +H+ RKRLDKS FVT K N VGGGTN+VLNAL AYL
Sbjct: 1 MSSETILQKQLSKSGKVSLNNSNFKHTKRKRLDKSVFVTQKQNVVGGGTNSVLNALAAYL 60
Query: 306 RYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
RYLEGT RDDWQE+ EKLR AE RDGASF LFGPALCLGIISRR V+YE+IK+EKERNA
Sbjct: 61 RYLEGTARDDWQEVHEKLRTAEIRDGASFFALFGPALCLGIISRRRVYYESIKYEKERNA 120
Query: 366 GFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQ 419
GFLSPFGYS AT++A+AD VCSMEWY+L L+S S+ G Y RIWRWNGY IQ
Sbjct: 121 GFLSPFGYSTATVSASADTVCSMEWYFLRLLKSQLSDGGAYPIRIWRWNGYLIQ 174
>gi|326506778|dbj|BAJ91430.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 429
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 187/307 (60%), Gaps = 14/307 (4%)
Query: 129 EVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP-KICLWQTPFYDIKNLNDLPVS 187
+V+ ++ EEEVE+ + ++A V+ +L+ S G P +I W P YD K+L L S
Sbjct: 9 KVQVGVIYTEEEVEHSVCSVLANVESSLSNGSFTRGNPPEIKFWSAPLYDYKSLRQLSTS 68
Query: 188 HNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMS 247
N+F + T+ + PTL +E D G LPT +ELK F+ E+ +++W I S
Sbjct: 69 RNQFLNDKFSTTTALPTPTLPTLNVEIDTGSLPTLEELKVFLKESRMA-QDNWVPIKRTS 127
Query: 248 AETILTDKLSKLGKRSKRNLNN------------QHSPRKRLDKSFFVTDKGNTVGGGTN 295
A +IL L + +S +LN+ + +++ S F ++ V GGT+
Sbjct: 128 ARSILKAALIQRKIKSNVSLNDGDGGNIEDITTSTGASGRKIAGSMFASESSLEVRGGTD 187
Query: 296 AVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYE 355
L+AL AYL+YLEGT + WQEL +K+R AE+RDGASF TLFG A+ LG+ISRR + E
Sbjct: 188 ITLDALDAYLKYLEGTGKASWQELHDKVRFAETRDGASFRTLFGNAIQLGVISRRRAYQE 247
Query: 356 AIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNG 415
I++E++RNAGFLSPFGYS T+ +A DA+CS+EWYWL++L+S S EG Y + WRW G
Sbjct: 248 TIQYERDRNAGFLSPFGYSTPTVTSAVDAICSLEWYWLLALKSQVSIEGNYPLKFWRWKG 307
Query: 416 YQIQVHS 422
Y IQ S
Sbjct: 308 YLIQYTS 314
>gi|168038306|ref|XP_001771642.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677081|gb|EDQ63556.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 665
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 222/410 (54%), Gaps = 43/410 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WFK DLR+DDH G+ AAS Y+ V+P+Y+FD + + +S E+LE + A+ DLRK L+
Sbjct: 1 AILWFKHDLRLDDHPGVAAASAYKRVLPVYIFDPYVCAGWSKELLESLCDAVSDLRKELR 60
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK---VSLVD 163
GSDL++ R E+V+ L +++ ATS+ EEEVE ++ + V E+L K S+ +
Sbjct: 61 LLGSDLIVLTARTEHVLSRLAQKIGATSIITEEEVESTWQRTVHSVLESLEKEEPSSISE 120
Query: 164 GKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQ----RPLTSPILPPTLAGAKLEADWGPL 219
K ++ W P YD +P ++ F+++ PL SP P L D G L
Sbjct: 121 TKLELDQWSAPLYDTPESASIPDNYQAFQRIGLRTLAPLPSPAKFPGLPEGL--TDTGSL 178
Query: 220 PTFDELKEFVN----ENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNN-QHSPR 274
P F E E V +NPW E+ + E++L + SK +++ ++SP
Sbjct: 179 PDFKEFTESVEAIRRKNPWW--ETLKAAQSQPGESLLPQASNP--SSSKNGVSSAEYSPF 234
Query: 275 KR-----------------LDKSFFVTDKGNTVG-----GGTNAVLNALQAYLRYLEGTV 312
K L K ++ +G GG LN LQ YLR+LE T
Sbjct: 235 KSVLKWRDEYILEGPQASLLKKQGLDVEEEEVIGEYFIKGGATGALNVLQGYLRFLEPTN 294
Query: 313 RDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFG 372
RDD++ + E + E + GASF LF +L LG ISRR V +EA+++E++RN G LSPFG
Sbjct: 295 RDDYKAVYEHIWEMEKKPGASFRKLFASSLALGTISRRRVIFEALQYERDRNGGRLSPFG 354
Query: 373 YSAATI--AAAADAVCSMEWYWLMSLRS-LRSNEGVYSTRIWRWNGYQIQ 419
+S T+ A D++ S++W+ L+ +S L+++E + WRW GY IQ
Sbjct: 355 FSTFTVGNAVVTDSLVSLQWFDLLQRKSELQASEKGFHVSAWRWKGYHIQ 404
>gi|168060079|ref|XP_001782026.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666517|gb|EDQ53169.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 711
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 145/407 (35%), Positives = 211/407 (51%), Gaps = 38/407 (9%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+A++WFK DLR DDH GL A++Y V+PL++FD + S E L + A+ DLR+SL
Sbjct: 6 TAIVWFKHDLRTDDHPGLAFAAQYDHVIPLFIFDSSFYAGCSEERLASLFDAVADLRRSL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
K GS L+IR RV +V+ L +EV A+++ AEEEVE ++A V +L+ SL K
Sbjct: 66 KSIGSTLVIRRARVNDVLLNLAQEVGASTIIAEEEVEEIWHDLVASVSASLSVKSLSGQK 125
Query: 166 PKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPT-LAGAKLEADWGPLPTFDE 224
++ W YD++ + DLP ++ EF+++ R + P+ PT + + + G LP+
Sbjct: 126 TEVKQWNASLYDVEGIEDLPDNYKEFKRMGRRVLPPVNAPTSIPALPADIEEGHLPS--- 182
Query: 225 LKEFV-------NENPWKLEESWTLINNMSAETIL-------------TDKLSKLGKRSK 264
LK+F+ ENP+ E AE++L K S R+
Sbjct: 183 LKDFLASSKAKSKENPYS--EVLRAAQTQPAESLLMGKPHVTNGNVQQVTKASNSVARAL 240
Query: 265 RNLNNQHSPRKRLD--------KSFFVTDKGNTVG---GGTNAVLNALQAYLRYLEGTVR 313
NL N + K + K V + N VG GG LN L Y++ LE T+
Sbjct: 241 MNLLNNLAEEKPFNSVWEHTQPKDAKVEIRSNEVGIIRGGATGALNMLHVYIKALETTLN 300
Query: 314 DDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGY 373
+ E ++ E R GASF +F AL LG +SRR V+YE +K E+ER G +SPFG
Sbjct: 301 PVEGRMYEHIQELEKRPGASFRAIFNRALELGTLSRRRVYYEVMKCERERGGGLISPFGL 360
Query: 374 SAATIAAAADAVCSMEWYWLMSLRSL-RSNEGVYSTRIWRWNGYQIQ 419
S T +AA V S+EWY L+ +S + +E WRW GY IQ
Sbjct: 361 STFTASAALQDVKSIEWYELIQRKSRDQGSENGLKVCSWRWRGYLIQ 407
>gi|194688858|gb|ACF78513.1| unknown [Zea mays]
gi|414886443|tpg|DAA62457.1| TPA: hypothetical protein ZEAMMB73_674958 [Zea mays]
Length = 461
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 105/145 (72%)
Query: 275 KRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASF 334
KR+ S F ++ V GGT L+AL AYL+YLEGT WQEL +K+R AE+R GASF
Sbjct: 43 KRIINSKFASENSLEVSGGTEITLDALAAYLKYLEGTGNASWQELHDKVRLAETRYGASF 102
Query: 335 ATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLM 394
LFGPA+ LG+ISRR + E I++EK+RNAGFLSPFGYS T+ +A DA+CSMEWYWL+
Sbjct: 103 YILFGPAIQLGVISRRKAYTETIQYEKDRNAGFLSPFGYSTPTVTSAVDAICSMEWYWLL 162
Query: 395 SLRSLRSNEGVYSTRIWRWNGYQIQ 419
+ +S EG YS RIWRW GY +Q
Sbjct: 163 ASKSQVCIEGKYSIRIWRWKGYLVQ 187
>gi|302810940|ref|XP_002987160.1| hypothetical protein SELMODRAFT_426049 [Selaginella moellendorffii]
gi|300145057|gb|EFJ11736.1| hypothetical protein SELMODRAFT_426049 [Selaginella moellendorffii]
Length = 987
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 191/391 (48%), Gaps = 52/391 (13%)
Query: 48 VIWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
++WFK+DLR+DDH GLVAA S Y AV+PL+VFD + +S + +E ++ A+ DL+ +L
Sbjct: 81 IVWFKKDLRMDDHPGLVAAASSGYDAVIPLFVFDPMLFRGWSQDFVEALVEAVADLKLAL 140
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
+ GSDL IR G ++V+ +LV +V VF E+E+E R++ + D + +
Sbjct: 141 QAAGSDLAIRVGSAQDVMYKLVHQVNPRDVFTEDEIEEGPRKI--VCDTWSVLKAKCQNE 198
Query: 166 PKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
P + W ++ ++L + + +++ +Q L SP+ P+L PLP
Sbjct: 199 PALRQWTASLHENQDLEFISDDYRKYKAMQYSLVSPLGAPSLL--------PPLPG---- 246
Query: 226 KEFVNENPWKLEESWTLINNMSAETILTDK-----LSKLGKRSK---------RNLNNQH 271
VN+ E + L+ N S TIL +K L L + S+ R LN
Sbjct: 247 --DVNKGSIPAVEDFILLVNQSQLTILKEKDAGETLMYLQRSSRTTRRRPLWLRKLNAWF 304
Query: 272 SPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTV--RDDWQELQEKLRNAESR 329
K + + + VG G L+AL+A+L++ + + R Q LQ K
Sbjct: 305 P--KVMANNLSGVEHDVFVGCGATDALHALRAFLQFPQPSTYNRRMTQHLQRK------- 355
Query: 330 DGASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSME 389
SF + FG L LG IS R +H+EA+ + + S+ T+ A D V +E
Sbjct: 356 KDVSFRSTFGKVLALGTISLRRMHHEALLYSTSK--------WVSSQTVTTAIDEVKLIE 407
Query: 390 WYWLMSLRS-LRSNEGVYSTRIWRWNGYQIQ 419
WY L+ ++ L+ + + W+W G+ IQ
Sbjct: 408 WYSLLQRKTQLQEARNGWQVKTWKWRGFLIQ 438
>gi|218202511|gb|EEC84938.1| hypothetical protein OsI_32153 [Oryza sativa Indica Group]
Length = 994
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
YS+ ML+L++FALEDL+ LK Q SDL+I G E+V+ +LV EV+A +F EEEVEY +
Sbjct: 163 YSDTMLKLLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKLVNEVQAGLIFTEEEVEYRV 222
Query: 146 RQMMAIVDETLAKVSLVDGK-PKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILP 204
R ++A V+ +L+ S + G P+I +W YD KN +L SHN+F K + P+ +P+
Sbjct: 223 RNVLASVESSLSNASFLSGNPPEIVVWSASLYDYKNPRELSTSHNQFLKEKLPMNTPLAA 282
Query: 205 PTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKL 259
P+L +E + G LPT +ELK F+ E+ E++W + + SA +IL LS++
Sbjct: 283 PSLPALNIEIETGSLPTLEELKGFLKEHRTS-EDNWVPLTSTSARSILKKTLSQI 336
>gi|222641973|gb|EEE70105.1| hypothetical protein OsJ_30115 [Oryza sativa Japonica Group]
Length = 522
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 85 RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
RYS+ MLEL++FALEDL+ LK Q SDL+I G E+V+ +LV EV+A +F EEEVEY
Sbjct: 390 RYSDTMLELLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKLVNEVQAGLIFTEEEVEYR 449
Query: 145 LRQMMAIVDETLAKVSLVDGK-PKICLWQTPFYDIK 179
+R ++A V+ +L+ S + G P+I +W YD K
Sbjct: 450 VRNVLASVESSLSNASYLSGNPPEIVVWSASLYDYK 485
>gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
Length = 499
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 161/355 (45%), Gaps = 88/355 (24%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------R 85
++A +S+ G +++WF+ DLR+ D+ L A + +V+P+Y D R +
Sbjct: 13 SSAGSSRNGKGVSIMWFRNDLRIVDNEALFKAWASSSSVLPVYCVDPRHFGTTHYFKFPK 72
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+ ++ +L DL+K+LK++G DL+IR G E ++ LVE V A +++A+EE
Sbjct: 73 TGELRAQFLLESLVDLKKNLKKRGLDLVIRSGNPEFILPSLVEAVGADTIYAQEETCSEE 132
Query: 146 RQMMAIVDETL---AKVSLVDGKPKICLWQTPFYDIKNLNDLPVS-------HNEFRKLQ 195
Q+ V +++ AK+ LV W T Y +LNDLP + + +FRK
Sbjct: 133 LQVEKAVKKSIGTKAKLELV--------WGTTMY---HLNDLPFTTARLPDVYTQFRKAV 181
Query: 196 RPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDK 255
+S + P L KL GPLP D L E V + L++
Sbjct: 182 E--SSSRVRPCL---KLPQTLGPLP--DSLGEKVGD----LDK--------------VPN 216
Query: 256 LSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDD 315
LS LG R PR++ + GG A + L Y
Sbjct: 217 LSHLGLR----------PREQSSLA------AMQFAGGETAAIQRLCEYF---------- 250
Query: 316 WQELQEKLRN-AESRD---GASFATLFGPALCLGIISRRGVHYEA-IKFEKERNA 365
W + LRN E+R+ GA ++T F P L G IS R +H EA IK+EKER A
Sbjct: 251 WT--KNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIHEEASIKYEKERTA 303
>gi|384250184|gb|EIE23664.1| hypothetical protein COCSUDRAFT_47385 [Coccomyxa subellipsoidea
C-169]
Length = 842
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 171/399 (42%), Gaps = 65/399 (16%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRI---LSRYSNEMLELVIFALEDLR 102
A++W K DLR+DDH G V AA Q+V+P + + L R N +E ++ +L D+R
Sbjct: 211 ALVWLKHDLRLDDHPGFVQAADSAQSVIPFFCLAPELYVHLLRTPN-GIEGLLGSLADVR 269
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
SL+ QGSDL+IR ++ +E+V+ + AEEEVE+ + V +L
Sbjct: 270 HSLRGQGSDLVIRVSPLQAAFQEIVQHCSINEIIAEEEVEHRWLTATSDVSSSL------ 323
Query: 163 DGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPI----LPPTLAGAKLEADWGP 218
P W+ F+ D P + N FR QR PI P L G G
Sbjct: 324 ---PAGMQWR--FWKASLFEDEPYTDN-FRDFQRLRGRPIPPLSAPQRLPGLPAGVHAGE 377
Query: 219 LPTFDE------LKEFVNENPWKLEESWTLINN--MSAETILTDKLSKLGK-----RSKR 265
LPT ++ L + + +P LE + ++ S +L +++ G+ +
Sbjct: 378 LPTAEQLLAQLALADSLTLHPEVLEAARGIVEQWPPSGAPVLAHQIACGGEIVVLPALQS 437
Query: 266 NLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRN 325
L + +R S T V GG LR + TV D ++ L
Sbjct: 438 YLACRRPAAERASASEPSTSGRLPVEGG-----------LREMSVTV-DRFETPAMPL-- 483
Query: 326 AESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPF-----GYSAATIAA 380
SF +F A+ LG +SRR ++EA++ + SPF G +A A
Sbjct: 484 ------GSFPAIFSQAVSLGTLSRRRAYHEALQAMAD-----TSPFSRFVGGSAAVPARA 532
Query: 381 AADAVCSMEWYW-LMSLRSLRSNEGVYSTRIWRWNGYQI 418
A A + +++W L R +G + R WRW G+ +
Sbjct: 533 AMAAAETADFHWHLARADRERRLQGGGAPRHWRWRGHMV 571
>gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
Length = 499
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 162/355 (45%), Gaps = 88/355 (24%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------R 85
++A +S+ G +++WF+ DLR+ D+ L A + +V+P+Y D R +
Sbjct: 13 SSAGSSRNGKGVSIMWFRNDLRIVDNEALFKAWASSSSVLPVYCVDPRHFGTTHYFKFPK 72
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+ ++ +L DL+K+LK++G DL+IR G E ++ LVE V A +++A+EE
Sbjct: 73 TGELRAQFLLESLVDLKKNLKKRGLDLVIRSGNPEFILPLLVEAVGAHTIYAQEETCSEE 132
Query: 146 RQMMAIVDETL---AKVSLVDGKPKICLWQTPFYDIKNLNDLPVS-------HNEFRKLQ 195
Q+ V +++ AK+ LV W T Y +LNDLP + + +FRK
Sbjct: 133 LQVEKAVKKSIGTKAKLELV--------WGTTMY---HLNDLPFTTARLPDVYTQFRKAV 181
Query: 196 RPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDK 255
+S + P L KL GPLP D L E V + L++
Sbjct: 182 E--SSSRVRPCL---KLPQTLGPLP--DSLGEKVGD----LDK--------------VPN 216
Query: 256 LSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDD 315
LS LG R PR++ V+ GG A + L Y
Sbjct: 217 LSDLGLR----------PREQ------VSLAAMQFTGGETAAIQRLCEYF---------- 250
Query: 316 WQELQEKLRN-AESRD---GASFATLFGPALCLGIISRRGVHYEA-IKFEKERNA 365
W + LRN E+R+ GA ++T F P L G IS R ++ EA IK+EKER A
Sbjct: 251 WT--KNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIYEEASIKYEKERTA 303
>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
Length = 557
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 158/350 (45%), Gaps = 80/350 (22%)
Query: 39 TSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY-------SNEM 90
TS+ +G A++WF+ DLR+ D+ L+ A QAVVPLYV D R+ + + E+
Sbjct: 58 TSRKGTGIAIVWFRNDLRISDNEALLKAWQSSQAVVPLYVVDPRLYGQTYHFGFPKTGEL 117
Query: 91 -LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMM 149
+ ++ ++ +LR +L+++G DL++R G+ E+V+ + + + A +V+A +E +
Sbjct: 118 RAQFIMESVANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIGAHTVYAHKETCSEETTVE 177
Query: 150 AIVDETLAKVSLVDGKPKICL-----WQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPI-- 202
V LA ++G PK+ + W Y +L+DLP S +E + +
Sbjct: 178 TGVKRGLAN---LEGGPKMQIRLDFVWGGTLY---HLDDLPFSPSELPDVYTQFRKGVEY 231
Query: 203 ---LPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKL 259
+ P L K+ GPLP ES L++K+ +L
Sbjct: 232 NCKVRPAL---KMPTQMGPLP-----------------ES------------LSEKIGEL 259
Query: 260 GK-RSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQE 318
G + L ++ + L F GG A L LQ Y W +
Sbjct: 260 GDIPTMAELGLKYREQSPLGVMHFE--------GGETAALARLQDYF----------WNK 301
Query: 319 LQEKLRNAESRD---GASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
Q K+ E+R+ GA+++T F P L G +S R +H E ++E ER A
Sbjct: 302 DQLKIYK-ETRNGMLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETERVA 350
>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
Length = 577
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 95/365 (26%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM--- 90
T+ + +G +G AV+WF+ DLRV D+ L+ A S +AV+P+Y D R+ + ++
Sbjct: 68 TSPSLRRGGAGVAVVWFRNDLRVLDNEALLRAWSASEAVLPVYCVDPRVFAGSTHYFGFP 127
Query: 91 ------LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
+ +I L DL++ L+++G DL++R G+ E ++ + + V A +++A +E
Sbjct: 128 KTGALRAQFLIECLGDLKQILRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSE 187
Query: 145 LRQMMAIVDETLAKVSLVDG---------KPKICL-WQTPFYDIKNL----NDLPVSHNE 190
+ +V + L +V + G P++ L W Y I +L ++LP + +
Sbjct: 188 ELLVERLVSKGLEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNLPDVYTQ 247
Query: 191 FRKLQRPLTS----PILPPTLAGAKLEADWGPLP--TFDELKEFVNENPWKLEESWTLIN 244
FRK +S LPP+L GPLP + DE+ W I
Sbjct: 248 FRKAVESKSSVRNCTKLPPSL---------GPLPSSSIDEIG------------GWGAIP 286
Query: 245 NMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAY 304
+ + L S ++KG GG NA L + Y
Sbjct: 287 TLES----------------------------LGLSVTKSEKGMHFIGGENAALGRVHEY 318
Query: 305 LRYLEGTVRDDWQELQEK----LRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFE 360
W++ Q K RN G ++T F P L G +S R + E ++E
Sbjct: 319 F----------WKKDQLKDYKVTRNGML--GPDYSTKFSPWLASGSLSPRYICEEVKRYE 366
Query: 361 KERNA 365
K+R A
Sbjct: 367 KQRVA 371
>gi|384246200|gb|EIE19691.1| DNA photolyase [Coccomyxa subellipsoidea C-169]
Length = 407
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEM-------LELVIFA 97
+AV+WF+ DLRV D+ L A++ +++P+Y FD R S N + + ++ A
Sbjct: 85 AAVMWFRNDLRVHDNEALAIANRDSSSLLPVYCFDPREYSSSGNGINSTGPYRAQFIVDA 144
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ +LR SL+ GSDL++R G+ E V+ +L ++V A+ VF EV Y + ++ +A
Sbjct: 145 VMELRNSLRAIGSDLIVRIGKPEEVLTDLAKKVGASKVFCHSEVTYE----EDLTEKQVA 200
Query: 158 KVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFR 192
V+ W + Y + L DLP +H EFR
Sbjct: 201 AALKVEDIQLKASWGSTLYSPDDLPFKLGDLPATHGEFR 239
>gi|52075946|dbj|BAD46026.1| PPR-protein-like [Oryza sativa Japonica Group]
Length = 629
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
YS+ MLEL++FALEDL+ LK Q SDL+I G E+V+ +LV EV EEEVEY +
Sbjct: 457 YSDTMLELLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKLVNEV----TMQEEEVEYRV 512
Query: 146 RQMMAIVDETLAKVSLVDGK-PKICLWQTPFYDIKNLN 182
R ++A V+ +L+ S + G P+I +W YD K N
Sbjct: 513 RNVLASVESSLSNASYLSGNPPEIVVWSASLYDYKQPN 550
>gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 147/353 (41%), Gaps = 97/353 (27%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---------LELVIF 96
+V+WF+ DLRV D+ L A + AV+P+Y D R+L+ ++ + +I
Sbjct: 98 SVVWFRSDLRVLDNEALARAWAASGAVLPVYCVDPRVLAGATHRFGFPKTGALRAQFLIE 157
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
L DL+++L+++G DL++R G+ E+++ E+ + V A +V+A +E + +V L
Sbjct: 158 CLGDLKQNLQKRGLDLLVRHGKPEDILPEIAKAVSAHTVYAHKETCSEELLVEHLVRRGL 217
Query: 157 AKVSLVDG-------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRKLQRPLTS---- 200
KV + G PK+ L W Y I +L ++LP + +FRK +S
Sbjct: 218 EKVIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVYTQFRKAVESKSSVRSC 277
Query: 201 PILPPTLAGAKLE-----ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDK 255
LPP+L A WG +PT + L V +
Sbjct: 278 SKLPPSLGPAPSSGLDEIGGWGSIPTLESLGLSVTK------------------------ 313
Query: 256 LSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDD 315
++KG GG +A L + Y
Sbjct: 314 ----------------------------SEKGMRFVGGESAALGRVHEYF---------- 335
Query: 316 WQELQEKLRNAESRD---GASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
W+ Q K+ E+R+ G ++T F P L G +S R V E ++EK+R A
Sbjct: 336 WKNDQLKVYK-ETRNGMLGPDYSTKFSPWLASGSLSPRYVCEEVRRYEKQRVA 387
>gi|357123300|ref|XP_003563349.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 587
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 150/357 (42%), Gaps = 101/357 (28%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---------LELVIF 96
AV+WF+ DLRV D+ LV A + +AV+P+Y D RI + ++ + +I
Sbjct: 89 AVVWFRNDLRVLDNEALVRAWAAAEAVLPVYCVDPRIFAGVTHRFGFPKTGALRAQFLIE 148
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
LEDL+++L+++G +L++R G+ E+++ + + V+A +V+A +E + +V L
Sbjct: 149 CLEDLKQNLQKRGLNLLVRHGKPEDILPAIAKAVRAHTVYAHQETCSEEILVERLVHRGL 208
Query: 157 AKVSLVDG-----------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRKLQRPLTS 200
+V + G PK+ L W T Y + +L ++LP + +FRK +S
Sbjct: 209 EQVVIPQGPGGASNQNKPLNPKLQLIWGTTMYHVDDLLFPVSNLPDVYTQFRKAVESKSS 268
Query: 201 --------PILPPTLAGAKLE-ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETI 251
P+L P + E WG +PT + L V +
Sbjct: 269 VQNCCKLPPLLGPAPSSGLDELGGWGSIPTLESLGLSVTK-------------------- 308
Query: 252 LTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGT 311
+KG GG +A L + Y
Sbjct: 309 --------------------------------AEKGMHFLGGESAALGRVHEYF------ 330
Query: 312 VRDDWQELQEKLRNAESRD---GASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
W++ Q K+ E+R+ G ++T F P L G +S R + E ++EK+R A
Sbjct: 331 ----WKKDQLKVYK-ETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRVA 382
>gi|452822894|gb|EME29909.1| photolyase/blue-light receptor [Galdieria sulphuraria]
Length = 444
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 17 NHRRSLRSRYKCVCCVSPTA-----AATSKGRSGSAVIWFKQDLRVDDHLGLV-AASKYQ 70
NH+ + K SP +A + ++WF+ DLR+ D+ L AA +
Sbjct: 82 NHKSDNQRHLKTAPLFSPLGENFGESAGQAYKGSKIIVWFRNDLRLHDNPALFRAAEEGS 141
Query: 71 AVVPLYVFDHRILSRYSNEM-------LELVIFALEDLRKSLKEQGSDLMIRFGRVENVI 123
++P+Y FD R + S + +I ++EDLRKS + +GSDL++R GR E V+
Sbjct: 142 LILPVYCFDPRQFGKTSFGFEKTGRYRAQFLIDSVEDLRKSFRAKGSDLIVRLGRPEEVL 201
Query: 124 RELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL-- 181
EL + VF EV Y IV+E + G LW Y ++L
Sbjct: 202 PELCRQTGCKRVFCHREVTYE----DLIVEEDVGDALESIGVEMTLLWSNTLYQAEDLPF 257
Query: 182 --NDLPVSHNEFR-------KLQRPLT-SPILPPTLAGAKLEADWGPLPTFDEL 225
++P + +FR K++ PL S PP + + G +PT EL
Sbjct: 258 QVENMPDIYTKFRESVETGGKIREPLELSEAFPP-----RPRCEPGEIPTLTEL 306
>gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
Length = 483
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 46 SAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHR-------ILSRYSNEMLELVIFA 97
+A++W + DLRV DH L AA Y V+P+Y FD R L + S+ + +
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQVIPVYCFDPRHFGTTMFDLPKMSSIRARFLRES 63
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
++DLR S+++ G+DL++R GR E+++ ELV + A V +E+ + V++ L
Sbjct: 64 VQDLRDSVQDLGADLVVRGGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETAVEDALR 123
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL-----NDLPVSHNEFRKL--QRPLTSPIL--PPTLA 208
G W Y I ++ +D+P + FRK ++ P L P +L
Sbjct: 124 DTGATPG----FFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDSLL 179
Query: 209 GAKLEADWGPLPTFDEL 225
+ + G +PT DEL
Sbjct: 180 PLPEDLNPGSIPTLDEL 196
>gi|356507809|ref|XP_003522656.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Glycine max]
Length = 549
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 156/360 (43%), Gaps = 90/360 (25%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------R 85
T+ T G+A++WF+ DLRV D+ L A + V+P+Y D R+ + +
Sbjct: 45 TSNVTKGSGKGTAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPK 104
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE----- 140
+ ++ L DLRK+L ++G +L+++ G+ E ++ L + +A +V+A++E
Sbjct: 105 TGALRAQFLLECLADLRKNLMKRGLNLLVQHGKPEEILPSLAKSFQAHTVYAQKETCSEE 164
Query: 141 ------VEYHLRQMMAIVDETLAKVSLVDGKPKICL-WQTPFYDIKNL----NDLPVSHN 189
V L+Q++ +E+ + +++ + PK+ L W T Y + +L LP +
Sbjct: 165 LNVERLVMRGLKQVVTSPEES-SGITVSNNIPKLQLVWGTTMYHLDDLPFDATSLPDVYT 223
Query: 190 EFRKL---QRPLTSPI-LPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINN 245
+FRKL + + S I LP +L DWG LP+ ++L
Sbjct: 224 QFRKLVETKCTIRSCIKLPASLGPPPTVQDWGCLPSLEQL-------------------G 264
Query: 246 MSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYL 305
+S++++ +KG GG A L+ + Y
Sbjct: 265 LSSQSV---------------------------------NKGMKFVGGETAALSRVYEYF 291
Query: 306 RYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
+ D + ++ RN G ++T F P L G +S R ++ E ++E +R A
Sbjct: 292 ------WKKDLLRVYKETRNGML--GPDYSTKFSPWLASGSLSPRFIYEEVKRYENDRLA 343
>gi|413955020|gb|AFW87669.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 578
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 147/355 (41%), Gaps = 87/355 (24%)
Query: 41 KGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM--------- 90
+G G AV+WF+ DLRV D+ L+ A + +AV+P+Y D R+ + ++
Sbjct: 75 RGGVGVAVVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAGSTHYFGFPKKGALR 134
Query: 91 LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMA 150
+ +I L DL++SL+++G DL++R G+ E ++ + + V A +++A +E +
Sbjct: 135 AQFLIECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSEELLVER 194
Query: 151 IVDETLAKVSLVDG---------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRKLQR 196
+V + L +V + G P++ L W Y I +L + LP + +FRK
Sbjct: 195 LVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRKAVE 254
Query: 197 PLTSPILPPTLAGAKLEADWGPLP--TFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
S AKL GP P + DE+ W + + +
Sbjct: 255 SKCS-----VRNCAKLPTSLGPPPSSSIDEIG------------GWGTVPTLES------ 291
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L S ++KG GG +A L + Y
Sbjct: 292 ----------------------LGPSVTKSEKGMHFIGGESAALGRVHEYF--------- 320
Query: 315 DWQELQEK----LRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
W++ Q K RN G ++T F P L G +S R + E ++EK+R A
Sbjct: 321 -WKKDQLKDYKVTRNGML--GPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRVA 372
>gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 483
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 46 SAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHR-------ILSRYSNEMLELVIFA 97
+A++W + DLRV DH L AA Y V+P+Y FD R L + S+ + +
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQVIPVYCFDPRHFGTTMFDLPKMSSIRARFLRES 63
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
++DLR S+++ G+DL++R GR E+++ ELV + A V +E+ + V++ L
Sbjct: 64 VQDLRDSVQDLGADLVVRRGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETAVEDALR 123
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL-----NDLPVSHNEFRKL--QRPLTSPIL--PPTLA 208
G W Y I ++ +D+P + FRK ++ P L P +L
Sbjct: 124 DTGATPG----FFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDSLL 179
Query: 209 GAKLEADWGPLPTFDEL 225
+ + G +PT DEL
Sbjct: 180 PLPEDLNPGSIPTLDEL 196
>gi|226508658|ref|NP_001146707.1| uncharacterized protein LOC100280309 [Zea mays]
gi|219888435|gb|ACL54592.1| unknown [Zea mays]
Length = 550
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 147/355 (41%), Gaps = 87/355 (24%)
Query: 41 KGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM--------- 90
+G G AV+WF+ DLRV D+ L+ A + +AV+P+Y D R+ + ++
Sbjct: 47 RGGVGVAVVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAGSTHYFGFPKKGALR 106
Query: 91 LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMA 150
+ +I L DL++SL+++G DL++R G+ E ++ + + V A +++A +E +
Sbjct: 107 AQFLIECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSEELLVER 166
Query: 151 IVDETLAKVSLVDG---------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRKLQR 196
+V + L +V + G P++ L W Y I +L + LP + +FRK
Sbjct: 167 LVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRKAVE 226
Query: 197 PLTSPILPPTLAGAKLEADWGPLP--TFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
S AKL GP P + DE+ W + + +
Sbjct: 227 SKCS-----VRNCAKLPTSLGPPPSSSIDEIG------------GWGTVPTLES------ 263
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L S ++KG GG +A L + Y
Sbjct: 264 ----------------------LGPSVTKSEKGMHFIGGESAALGRVHEYF--------- 292
Query: 315 DWQELQEK----LRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
W++ Q K RN G ++T F P L G +S R + E ++EK+R A
Sbjct: 293 -WKKDQLKDYKVTRNGML--GPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRVA 344
>gi|225429814|ref|XP_002280771.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 549
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 146/351 (41%), Gaps = 89/351 (25%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------RYSNEMLELV 94
SG A++WF+ DLRV D+ LV A + QAV+P+Y D R+ + + +
Sbjct: 50 SGVAIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 109
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE-----------VEY 143
I L DL+++L +G +L+I+ G+ E ++ L + +A +V+A +E V
Sbjct: 110 IECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVERLVRN 169
Query: 144 HLRQMMAIVDETLAKVSLVDGKPKICL-WQTPFYDIKNL----NDLPVSHNEFRK-LQRP 197
LRQ++ + PK+ L W + Y I++L + LP + +FRK ++
Sbjct: 170 GLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSVESK 229
Query: 198 LTSPIL--PPTLAGAKLE-ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
T I PTL G DWG +P+ D+L + +
Sbjct: 230 CTIRICIRTPTLLGPPPNIEDWGSVPSIDQL------------------------GLHEE 265
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
K+S R R + + + R+++ F+ D N +L
Sbjct: 266 KVS----RGMRFIGGEAAALSRVNEYFWKKDLLKVYKATRNGML---------------- 305
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
GA ++T F P L G +S R ++ E ++EKER A
Sbjct: 306 ----------------GADYSTKFSPWLASGSLSPRFIYQEVKRYEKERQA 340
>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 146/351 (41%), Gaps = 89/351 (25%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------RYSNEMLELV 94
SG A++WF+ DLRV D+ LV A + QAV+P+Y D R+ + + +
Sbjct: 87 SGVAIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 146
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE-----------VEY 143
I L DL+++L +G +L+I+ G+ E ++ L + +A +V+A +E V
Sbjct: 147 IECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVERLVRN 206
Query: 144 HLRQMMAIVDETLAKVSLVDGKPKICL-WQTPFYDIKNL----NDLPVSHNEFRK-LQRP 197
LRQ++ + PK+ L W + Y I++L + LP + +FRK ++
Sbjct: 207 GLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSVESK 266
Query: 198 LTSPIL--PPTLAGAKLE-ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
T I PTL G DWG +P+ D+L + +
Sbjct: 267 CTIRICIRTPTLLGPPPNIEDWGSVPSIDQLG------------------------LHEE 302
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
K+S R R + + + R+++ F+ D N +L
Sbjct: 303 KVS----RGMRFIGGEAAALSRVNEYFWKKDLLKVYKATRNGML---------------- 342
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
GA ++T F P L G +S R ++ E ++EKER A
Sbjct: 343 ----------------GADYSTKFSPWLASGSLSPRFIYQEVKRYEKERQA 377
>gi|408673564|ref|YP_006873312.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
gi|387855188|gb|AFK03285.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
Length = 475
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 135/336 (40%), Gaps = 83/336 (24%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL-------SRYSNEMLELVIFALED 100
+ WF+ DLR+ D+ L+ A+K V+P+Y+FD R R + +I A+E+
Sbjct: 5 LFWFRNDLRLHDNEALIQATKAGNVIPVYIFDERQFINTPLGFKRTGTFRAKFLIEAVEN 64
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
LR +L++ GS+L+++ G+ E ++ +L E+ +A +V+A +EV Q I++ L+K
Sbjct: 65 LRDNLQKIGSNLIVKVGKPEEILAQLAEKYEAVAVYASKEV----TQEETIIEANLSKKL 120
Query: 161 LVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR-------KLQRPLTSPILPPTLAG 209
+W Y ++L N LP EFR K++R + P TL
Sbjct: 121 KPLNIEIELVWIATLYHARDLPFQINFLPDVFTEFRKKVERSAKIRRTFDA---PKTLPK 177
Query: 210 AKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNN 269
D G +PT + L E DK S L R
Sbjct: 178 VDKSVDLGEMPTLESL---------------------GYEKPKFDKRSVLAFRG-----G 211
Query: 270 QHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESR 329
+ S RLD+ + D T N ++
Sbjct: 212 ETSALYRLDEYIWDKDLPKTYKETRNGLV------------------------------- 240
Query: 330 DGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
G ++T F L LG IS R ++ E K+EKE A
Sbjct: 241 -GGDYSTKFSAWLSLGCISPRTIYEEVKKYEKEVEA 275
>gi|449436489|ref|XP_004136025.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
gi|449498514|ref|XP_004160558.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
Length = 451
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ + G + ++WF+ DLR+ D+ L +A +V+P+Y FD R + S+
Sbjct: 110 PSEPSNGAGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSSGFDK 169
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
VI ++ DLRK+L+ +GS+L++R G+ E V+ EL +E+ A +V+A EV +
Sbjct: 170 TGPFRAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDE 229
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK 193
+ + E+ K V+ K W + Y I +L D+P SH FR+
Sbjct: 230 METEERI-ESAMKEENVEVK---YFWGSTLYHIDDLPFKMEDMPSSHGAFRE 277
>gi|449436487|ref|XP_004136024.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
gi|449498510|ref|XP_004160557.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
Length = 459
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ + G + ++WF+ DLR+ D+ L +A +V+P+Y FD R + S+
Sbjct: 110 PSEPSNGAGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSSGFDK 169
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
VI ++ DLRK+L+ +GS+L++R G+ E V+ EL +E+ A +V+A EV +
Sbjct: 170 TGPFRAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDE 229
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK 193
+ + E+ K V+ K W + Y I +L D+P SH FR+
Sbjct: 230 METEERI-ESAMKEENVEVK---YFWGSTLYHIDDLPFKMEDMPSSHGAFRE 277
>gi|449015791|dbj|BAM79193.1| probable photolyase/blue-light receptor [Cyanidioschyzon merolae
strain 10D]
Length = 438
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 26/201 (12%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYS-------NEMLELVI 95
G+ ++WF+ DLR+DD+ L AA + A V+P+Y FD R + S + +I
Sbjct: 99 GGTVLLWFRSDLRLDDNPALCAALEEGASVLPVYCFDPRQFGKTSFGFEKTGRYRAKFLI 158
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
++ DLRK+LK++G++L+IR G+ E VI +L + + VF +EV Y + V
Sbjct: 159 ESVADLRKALKKKGNNLLIRIGKPEEVIPDLCRKYEIKKVFYHQEVTYEELECEEAVARK 218
Query: 156 LAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR-------KLQRPLTSPILP 204
L + V+ P W Y +++L + P + E+R +++ PL + P
Sbjct: 219 LEDMK-VEVHP---FWTNTLYAVEDLPFPVEETPDVYTEYRLAVESKSRVRDPLAA---P 271
Query: 205 PTLAGAKLEADWGPLPTFDEL 225
+ ++G LPT ++L
Sbjct: 272 DEIRAIPRHVEYGTLPTLEDL 292
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 133/337 (39%), Gaps = 85/337 (25%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFALE 99
++WF+ DLR+ DH L A K + A+ P+Y FD R + + ++ ++
Sbjct: 7 LLWFRNDLRLHDHEPLQRALKQKTAIAPVYCFDPRHFGKTPYGFPKTGAFRAQFLLESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR SL+++GSDL++R G+ E V+ + ++ AT+V+ EE V+E L +
Sbjct: 67 DLRASLQKRGSDLIVRVGKPEEVVPAIARDLGATAVYFHEEATAE----EIAVEERLIQA 122
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-------LQRPLTSPILPPTLA 208
G W Y +L +++P +FRK ++ P SP P L
Sbjct: 123 LKDQGTAHQSFWGATLYAPDDLPFGTDEIPEVFTQFRKRVESQSDVRSPFASPKALPALG 182
Query: 209 GAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN 268
L G LPT + ++ E DK L R
Sbjct: 183 AIAL----GELPT---------------------LADLGLEPPSPDKRGVLAFR------ 211
Query: 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAES 328
GG A L LQ Y + D + ++ RN
Sbjct: 212 -----------------------GGETAGLARLQHYF------WQSDRLSVYKETRNGML 242
Query: 329 RDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
GA +++ F P L LG +S R +H + + +E +R A
Sbjct: 243 --GADYSSKFSPWLALGCLSPRYIHDQVLTYEDDRTA 277
>gi|390942759|ref|YP_006406520.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
gi|390416187|gb|AFL83765.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
Length = 472
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 141/340 (41%), Gaps = 96/340 (28%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS-------RYSNEMLELVIFALE 99
++WF+ DLR+ DH L +A K + ++P+Y FD R+ + N + ++ A+E
Sbjct: 7 LVWFRNDLRLHDHAALFSALEKSEEIIPVYCFDPRMFKETNLGFRKTGNHRAKFLLQAVE 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L+ +L++ GS+L+I G E++I + +E+ +++ EEV +Q V+ L
Sbjct: 67 NLKNNLQKVGSNLLILHGYPEDLIPQKAKELGVQAIYFSEEVTSEEKQ----VENALENA 122
Query: 160 SLVDGKPKICLWQTPFYDIKNLNDLPVSHNE--------------FRKLQRPLTSP--IL 203
+ G WQ + NL DLP N+ F K+++ +P I
Sbjct: 123 AYKLGIETASFWQITLF---NLEDLPFPVNQTPEIFTQFRKECEKFSKVRKTFPAPKNIK 179
Query: 204 PPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRS 263
PT+ +WG P L ++ ENP +S++ ++
Sbjct: 180 SPTI-------EWGDFPI---LSKYGLENP-----------AISSQAVM----------- 207
Query: 264 KRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKL 323
GG + + LQ Y ++D + ++
Sbjct: 208 -------------------------VFEGGEDEGIRRLQTYF------WKNDCLKTYKET 236
Query: 324 RNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
RN GA +++ F P L LG +S R + E ++EKER
Sbjct: 237 RNGLL--GADYSSKFSPWLALGCLSPRYIFEEVKRYEKER 274
>gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group]
Length = 547
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 24/176 (13%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---------L 91
G G A++WF+ DLRV D+ +V A + AV+P+Y D RI + ++
Sbjct: 46 GGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRA 105
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
+ +I LEDL+++L +QG DL+IR G+ E+++ + + V A +V+A +E + +
Sbjct: 106 QFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHQETCSEELLVEHL 165
Query: 152 VDETLAKVSLVDG---------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRK 193
V + L +V + G PK+ L W Y + +L N+LP + +FRK
Sbjct: 166 VRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRK 221
>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEM-- 90
P+ + + G + ++WF+ DLRV D+ L +AS +V+P+Y FD R + S+
Sbjct: 74 PSDPSNAAGTRRACIVWFRNDLRVHDNECLNSASNDSMSVLPVYCFDPRDYGKSSSGFDK 133
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+I ++ DLRK+L+ +GSDL++R GR E V+ EL + + A +V+A EV +
Sbjct: 134 TGPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDE 193
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ ++E + +G W + Y + + L D+P ++ F++
Sbjct: 194 VKAEDKIEEVMKD----EGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKE 241
>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
Length = 526
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 19/165 (11%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLEL----VIFALE- 99
+A++WF+ DLRV D+ L +A+K +V+P+Y FD R + S+ + F LE
Sbjct: 189 AAIVWFRNDLRVHDNEALSSANKEALSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLEC 248
Query: 100 --DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+LR +L+E+GSDL++R GR E V+ EL + + A +++A +EV + I E
Sbjct: 249 VANLRANLRERGSDLVVRIGRPEEVLVELAKSIGADALYAHQEVSHE-----EIATEEKI 303
Query: 158 KVSL-VDGKPKICLWQTPFYDIKN----LNDLPVSHNEFR-KLQR 196
K SL +G W + Y ++ L D+P ++ FR ++QR
Sbjct: 304 KSSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQR 348
>gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group]
gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group]
Length = 547
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 24/176 (13%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---------L 91
G G A++WF+ DLRV D+ +V A + AV+P+Y D RI + ++
Sbjct: 46 GGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRA 105
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
+ +I LEDL+++L +QG DL+IR G+ E+++ + + V A +V+A +E + +
Sbjct: 106 QFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHL 165
Query: 152 VDETLAKVSLVDG---------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRK 193
V + L +V + G PK+ L W Y + +L N+LP + +FRK
Sbjct: 166 VRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRK 221
>gi|75322263|sp|Q651U1.1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group]
gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group]
Length = 582
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 24/176 (13%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---------L 91
G G A++WF+ DLRV D+ +V A + AV+P+Y D RI + ++
Sbjct: 81 GGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRA 140
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
+ +I LEDL+++L +QG DL+IR G+ E+++ + + V A +V+A +E + +
Sbjct: 141 QFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHL 200
Query: 152 VDETLAKVSLVDG---------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRK 193
V + L +V + G PK+ L W Y + +L N+LP + +FRK
Sbjct: 201 VRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRK 256
>gi|448578492|ref|ZP_21643927.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445727033|gb|ELZ78649.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 508
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 146/343 (42%), Gaps = 63/343 (18%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYS----------NEMLEL 93
S +A++WF++DLR+ D+ LV A VVP+Y FD R + S L
Sbjct: 3 SHTALVWFRRDLRLHDNEALVDACGADRVVPVYCFDPRDYCQQSYGGPDSFDVRKTGLHR 62
Query: 94 VIFALE---DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMA 150
+ F LE DLR SL+++GSDL++R GR E V+ ++ V A SV RQ+ +
Sbjct: 63 LRFRLESVADLRSSLRDRGSDLVVRIGRPEAVLPDVATAVGADSVSMHTWPTPEERQVES 122
Query: 151 IVDETLAKVSLVDGKPKICLWQT---PFYDIKNLNDLPVSHNEFRK-------LQRPLTS 200
V + L V + +P+ T P +L LP ++ FRK ++ PL +
Sbjct: 123 AVQQALDDVGV---EPRRFWGHTLTHPDDLPMDLGALPDTYTTFRKAVENDASIREPLHT 179
Query: 201 PILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLG 260
P L P L + E G +P +L E V+ +E NN A
Sbjct: 180 PEL-PALPDSVPEP--GEIPALSDLDEDVSNAVQAEDEPLASPNNEQA------------ 224
Query: 261 KRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQ 320
+ Q +P ++ F GG A +++Y+ EG +++E +
Sbjct: 225 -----TPSEQATPSEQAIPLF---------EGGETAGRERVESYI--WEGDHLREYKETR 268
Query: 321 EKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
L G +++ F P L G +S R V E ++E R
Sbjct: 269 NGLV------GRDYSSKFSPWLNEGCLSPRYVQSEVERYEDVR 305
>gi|434399467|ref|YP_007133471.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
gi|428270564|gb|AFZ36505.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
Length = 488
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 85/335 (25%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYS-------NEMLELVIFALE 99
+IWF+ DLR+ DH + A + QA ++P+Y FD R + S N + ++ ++
Sbjct: 7 LIWFRNDLRLHDHKPIYQAVQEQAQIIPVYCFDQREFKQTSFGFPKTGNYRAQFLLESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DL+KSL++ GSDL+I +G E +I L +++K SV+ +EV ++ + + L K+
Sbjct: 67 DLKKSLQKLGSDLIIYWGFPEQIIPHLAQKLKIDSVYYHQEVTAEELKVEQALKQELQKL 126
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-------LQRPLTSPILPPTLA 208
+ W Y ++L + +P + FRK ++ PL +P P+L
Sbjct: 127 KIQVN----SFWGATLYLTEDLPFEISQIPELYTNFRKQVEAKSTIENPLPTPKELPSLP 182
Query: 209 GAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN 268
+L G +P I+++ T + DK + L
Sbjct: 183 SIEL----GQIPQ---------------------ISDLGLTTPIFDKRAVL--------- 208
Query: 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAES 328
N GG T A L L Y L+ L+E
Sbjct: 209 -------------------NFKGGETEA-LTRLNQYFWQLDC--------LKEYKETRNG 240
Query: 329 RDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
GA++++ F P L G IS R ++ + K+E +R
Sbjct: 241 MLGANYSSKFSPWLARGCISPRYIYEQVQKYETKR 275
>gi|404450368|ref|ZP_11015352.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
gi|403764104|gb|EJZ25020.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
Length = 473
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 134/331 (40%), Gaps = 80/331 (24%)
Query: 48 VIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRIL-------SRYSNEMLELVIFALE 99
++WF+ DLRV DH L AAS K V+P+Y FD R ++ + + ++ A++
Sbjct: 5 LVWFRNDLRVHDHAPLFAASQKAVEVIPVYCFDPRQFDTIELGFAKTGSFRADFLLSAVD 64
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LRK L E GSDL I G+ E + L E+ +VF EEV + V+E L K
Sbjct: 65 NLRKRLNEIGSDLFILQGKPEEEVSRLALELNVDAVFFSEEVTSEEK----YVEEALEKK 120
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-----LQRPLTSPILPPTLAGA 210
+G WQ+ + +++L N +P +FRK T PI P L
Sbjct: 121 LWKEGIKTESFWQSTLFHLEDLPFPINQVPEVFTQFRKECEKYAHIKKTFPI-PINLKLP 179
Query: 211 KLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQ 270
+L+ G +P+ LK F E P
Sbjct: 180 ELDVLRGEIPS---LKSFGLEKP------------------------------------D 200
Query: 271 HSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRD 330
PR L GG L LQ Y + + D+++ + L
Sbjct: 201 ADPRSVL-----------VFEGGEEEGLRRLQTY--FWKNDCLKDYKQTRNGLL------ 241
Query: 331 GASFATLFGPALCLGIISRRGVHYEAIKFEK 361
GA +++ F P L LG +S R ++ E K+EK
Sbjct: 242 GADYSSKFSPWLALGCLSPRYIYEEIQKYEK 272
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 136/338 (40%), Gaps = 91/338 (26%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYS-------NEMLELVIFALE 99
+IW++ DLR+ DH L A K +A ++P Y FD R + S N + ++ +L
Sbjct: 7 LIWYRNDLRLHDHEPLNKALKEKAEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESLA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DL+KSL+E+GSDL+IR G E +I +L +E+K T+V+ +EV +E +
Sbjct: 67 DLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYHQEV---------TAEELAVEK 117
Query: 160 SLVDGKPKI-----CLWQTPFYDIKNL----NDLPVSHNEFR-KLQRPLT-SPILPPTLA 208
+L G KI W Y NL +P FR K+++ T PILP +
Sbjct: 118 ALESGLNKIRVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTPKS 177
Query: 209 GAKLEA-DWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNL 267
+ L A + G LP L ET + D+ L R
Sbjct: 178 LSPLPAIEIGTLPDLAAL---------------------GLETPIFDQRGVLKFR----- 211
Query: 268 NNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQE--LQEKLRN 325
GG A L L+ Y WQ+ L+
Sbjct: 212 ------------------------GGETAALERLEEYF----------WQKNCLKSYKET 237
Query: 326 AESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
G +++ F P L G IS R ++ K+E++R
Sbjct: 238 RNGMLGGDYSSKFSPWLASGCISPRYIYEAVQKYEQQR 275
>gi|410027954|ref|ZP_11277790.1| DASH family cryptochrome [Marinilabilia sp. AK2]
Length = 474
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 78/333 (23%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYS-------NEMLELVIFAL 98
V+WF+ DLRV DH L AA K + V+P+Y FD R + S N + +I A+
Sbjct: 5 VVVWFRNDLRVHDHAPLFYAAEKAEEVIPVYCFDPRNFKKVSLGIDKTGNHRAKFLIEAV 64
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
++LR +L+ G DL+I G+ E V+ L ++ A ++F EEV ++ V+ L +
Sbjct: 65 DNLRSNLQSLGGDLVIIQGKPEEVLVSLAKKHDAEAIFFSEEVTDEEKE----VELQLEQ 120
Query: 159 VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR----KLQRPLTSPILPPTLAGA 210
+ G WQ+ Y I++L N P +FR K + + LP +
Sbjct: 121 NAWKHGIKTTAYWQSSLYHIQDLPFPVNQTPEVFTQFRKECEKFAKVQGTLPLPKKINFP 180
Query: 211 KLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQ 270
K + G LP L F + P ++S+ +L K
Sbjct: 181 KNSFNLGDLP---RLSTFGLKEP-----------DLSSRAVLVFK--------------- 211
Query: 271 HSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRD 330
GG + LQ Y + E + +++E + L
Sbjct: 212 ---------------------GGETEGIRRLQTY--FWEQDLLKEYKETRNGLL------ 242
Query: 331 GASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
GA +++ F + LG +S R ++ E ++EKER
Sbjct: 243 GADYSSKFSAWISLGCLSPRYIYEEVKRYEKER 275
>gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group]
Length = 547
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 24/176 (13%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---------L 91
G G A++WF+ DLRV D+ +V A + AV P+Y D RI + ++
Sbjct: 46 GGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVFPVYCVDPRISAGSTHYFGFPKTGALRA 105
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
+ +I LEDL+++L +QG DL+IR G+ E+++ + + V A +V+A +E + +
Sbjct: 106 QFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHL 165
Query: 152 VDETLAKVSLVDG---------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRK 193
V + L +V + G PK+ L W Y + +L N+LP + +FRK
Sbjct: 166 VRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRK 221
>gi|448729303|ref|ZP_21711620.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445795250|gb|EMA45779.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 485
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 138/330 (41%), Gaps = 59/330 (17%)
Query: 44 SGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHR-------ILSRYSNEMLELVI 95
+ +AV+WF+ DLR D+ LV A +Y V+P+Y FD R L++ + +I
Sbjct: 2 TDTAVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFGEATFGLAKTGPYRAQFLI 61
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
++ DLR SL+E GSDL +R G+ ENV+ EL E A + V YH +E
Sbjct: 62 ESVRDLRGSLREAGSDLFVRQGKPENVVSELAAEHGA------DIVHYH---TTPATEER 112
Query: 156 LAKVSLVDGKPKICLWQTPFYD--IKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLE 213
+ S+ DG + + F+ + ++ DLP P + L+
Sbjct: 113 AVEASVTDGLDEHGISSRGFWGKTLYHIEDLPTRVERIDDTFTPWRRTVEDGATVRDPLD 172
Query: 214 ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSP 273
A PT L E V++ +E T+ LG +H P
Sbjct: 173 A-----PTSVTLPETVSDAEGAGDEPGTIPTP-----------GDLGI-------EEHEP 209
Query: 274 RKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGAS 333
+R F GG +A L L Y+ EG +++E + L +A+
Sbjct: 210 DERAAIDF---------AGGESAGLRRLTEYV--WEGDHLREYKETRNGLLDAD------ 252
Query: 334 FATLFGPALCLGIISRRGVHYEAIKFEKER 363
+++ F L LG +S R +H ++E ER
Sbjct: 253 YSSKFSAWLALGCLSPRLIHEHVERYECER 282
>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 16/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEM-- 90
P+ + + G + ++WF+ DLRV D+ L +A+ +V+P+Y FD R + S+
Sbjct: 113 PSDPSNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDK 172
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+I ++ DLRK+L+ +GSDL++R GR E V+ EL + + A +V+A EV +
Sbjct: 173 TGPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDE 232
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ ++E L K V+ K W + Y + + L D+P ++ F++
Sbjct: 233 VKAEEKIEE-LMKDEGVEVK---YFWGSTLYHLDDLPFKLEDMPSNYGGFKE 280
>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ A + GR + ++WF+ DLR+ DH L AA +++P++VFD R + +
Sbjct: 97 PSGAPGAAGRRRT-LVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDR 155
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
++ ++ DLR+SL+ +G DL++R GR E VI EL A +V+A EV
Sbjct: 156 TGPYRASFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVS--- 212
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ +E ++K +G W + Y + + LND+P S+ FR+
Sbjct: 213 -RDECRTEEKVSKAIEKEGVEVKYFWGSTLYHLDDLPFRLNDMPSSYGGFRE 263
>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
Length = 457
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 16/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEM-- 90
P+ + + G + ++WF+ DLRV D+ L +A+ +V+P+Y FD R + S+
Sbjct: 113 PSDPSNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDK 172
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+I ++ DLRK+L+ +GSDL++R GR E V+ EL + + A +V+A EV +
Sbjct: 173 TGPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDE 232
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ ++E L K V+ K W + Y + + L D+P ++ F++
Sbjct: 233 VKAEEKIEE-LMKDEGVEVK---YFWGSTLYHLDDLPFKLEDMPSNYGGFKE 280
>gi|388494660|gb|AFK35396.1| unknown [Medicago truncatula]
Length = 456
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFA 97
+A++WF+ DLRV D+ L A+ +V+P+Y FD + S+ +I +
Sbjct: 119 TAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIES 178
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ DLRK+LK +GSDL++R G+ E V+ EL +E+ A +V+ EV + +M ++ +
Sbjct: 179 ISDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKM- 237
Query: 158 KVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFR 192
K V+ K W + Y +++ L D+P ++ FR
Sbjct: 238 KEENVEVK---YFWGSTLYHVEDLPFGLEDMPSNYGGFR 273
>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
Length = 458
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 93/172 (54%), Gaps = 16/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-- 90
P+ + + G ++++WF+ DLRV D+ L +A+ + +V+P+Y FD R + S+
Sbjct: 115 PSDPSNAAGIRRASIVWFRNDLRVHDNECLNSANNESMSVLPVYCFDPREYGKSSSGFDK 174
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+I ++ DLRK+L+++GSDL++R G+ E V+ EL + + A +V+A +EV +
Sbjct: 175 TGPYRASFLIESVTDLRKNLQDRGSDLVVRVGKPETVLVELAKAIGADAVYAHKEVSHDE 234
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ ++ + +G W + Y + + L D+P ++ FR+
Sbjct: 235 VKAEDKIEAAMKD----EGVEVKYFWGSTLYHVDDLPFKLEDMPSNYGGFRE 282
>gi|357442473|ref|XP_003591514.1| DNA photolyase protein [Medicago truncatula]
gi|355480562|gb|AES61765.1| DNA photolyase protein [Medicago truncatula]
Length = 456
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFA 97
+A++WF+ DLRV D+ L A+ +V+P+Y FD + S+ +I +
Sbjct: 119 TAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIES 178
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ DLRK+LK +GSDL++R G+ E V+ EL +E+ A +V+ EV + +M ++ +
Sbjct: 179 VSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKM- 237
Query: 158 KVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFR 192
K V+ K W + Y +++ L D+P ++ FR
Sbjct: 238 KEENVEVK---YFWGSTLYHVEDLPFGLEDMPSNYGGFR 273
>gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis]
gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis]
Length = 578
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 47/234 (20%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHRILS--------R 85
T AT G+ G+A++WF+ DLR+ D+ + A +AV+P+Y D R+ +
Sbjct: 47 TTMATRHGK-GTAIVWFRNDLRILDNEVLFKAWLSSEAVLPVYCVDPRLFQTTHYFGFPK 105
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV---E 142
+ +I L DL+K+L ++G +L+IR G+ E V+ L + A +V+A +E E
Sbjct: 106 TGALRAQFIIECLADLKKNLMKRGLNLLIRHGKPEEVLPSLAQAFAAHTVYAHKETCSEE 165
Query: 143 YHLRQMMAIVDETLAKVSL---------VDGKPKICL-WQTPFYDIK----NLNDLPVSH 188
H+ ++M ++ L +V L + PK+ L W + Y I N+ LP
Sbjct: 166 VHVEKLM---NKALHRVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDF 222
Query: 189 NEFRK---------LQRPLTSP--------ILPPTLAGAKLEADWGPLPTFDEL 225
+FRK L + P +P +LA DWG +P+ +L
Sbjct: 223 FDFRKARIIPFFMLLMLQIVEPKCAVRSCIKIPKSLAPPPTVEDWGCVPSIHQL 276
>gi|15790677|ref|NP_280501.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
gi|169236417|ref|YP_001689617.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
gi|10581208|gb|AAG19981.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
gi|167727483|emb|CAP14271.1| deoxyribodipyrimidine photolyase [Halobacterium salinarum R1]
Length = 462
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++DLRV D+ GL AA+ VVP+YVFD +LS+ + + LR + +E
Sbjct: 3 LYWHQRDLRVPDNRGLHAATDGDTVVPVYVFDDTVLSQVGRPKRAFLAAGVRALRAAYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPK 167
+GSDL++R G E+V+ L +E A +VF + R V + LA VD
Sbjct: 63 RGSDLLVREGDAESVLPALADEFDADTVFHAAHYDAARRNRRTRVADALAAAG-VDTAGH 121
Query: 168 ICLWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSPILPP 205
+ D L+D SH++F Q P P+ P
Sbjct: 122 V---DHTLVDPATLDDAYPSHSQFYDDWQQAPKPDPVPAP 158
>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 24/164 (14%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYS-----------NEMLEL 93
++++WF+ DLRV D+ LV+A++ +++P+Y FD + + S N +LE
Sbjct: 179 ASIVWFRNDLRVHDNEALVSANRDSLSILPVYCFDPKDYGKSSSGFDKTGPYRANFLLEC 238
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
V +LR SL+E+GSDL++R G E V+ +L + V A +++ +EV Y Q +
Sbjct: 239 V----ANLRSSLRERGSDLIVRVGSPEAVLVDLAKSVGAEALYVHQEVTYEELQ----AE 290
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
E +A G W + + +++ L D+P ++ FR+
Sbjct: 291 EKVAAALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFRE 334
>gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
Length = 435
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 75/122 (61%), Gaps = 17/122 (13%)
Query: 33 SPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEML 91
+P++AA G ++++WF+ DLR+ D+ LV+AS+ +++P+Y FD R Y N L
Sbjct: 45 NPSSAA---GLRRASIVWFRNDLRLHDNEALVSASRDSLSILPVYCFDPR---DYGNSSL 98
Query: 92 EL-------VIFALE---DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ V F E +LR SL+E+GSDL++R G+ E V+ +L + V A S++A +EV
Sbjct: 99 GIDKNGPYRVKFLFECVANLRSSLRERGSDLIVRIGKPEEVLLDLAKSVGAESLYAHQEV 158
Query: 142 EY 143
Y
Sbjct: 159 AY 160
>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
Length = 576
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 148/347 (42%), Gaps = 84/347 (24%)
Query: 41 KGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEML-------- 91
KG+ G ++WF+ DLR+ D+ L+ A +++P+Y D R+ +
Sbjct: 80 KGK-GICIVWFRNDLRILDNESLLQAWLSSDSLLPVYCVDPRLFHTTHHFAFPKTGALRA 138
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
+ +I L DL+ +L ++G +L IR G+ E+++ L A +V+A++E + +
Sbjct: 139 QFLIECLADLKNNLMKRGLNLFIRHGKPEDILPSLARAFSAHTVYAQKETCSEELIVERL 198
Query: 152 VDETLAKVSL------VDGKPKICL-WQTPFYDIKNL----NDLPVSHNEFRK--LQRPL 198
V + L +V+L +PK+ L W + Y I +L N++P + +F K ++ L
Sbjct: 199 VSKALQRVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCVIRGCL 258
Query: 199 TSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSK 258
P+ TLA + DWG +P+ D+L
Sbjct: 259 KIPV---TLAPSPPVDDWGCVPSLDQL--------------------------------- 282
Query: 259 LGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQE 318
L Q K+ F+ KG GG A L+ + Y + D +
Sbjct: 283 -------GLQPQ--------KARFI--KGMRFLGGETAALSRVYEYF------WKKDLLK 319
Query: 319 LQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
+ ++ RN G ++T F P L G +S R ++ + ++E ER A
Sbjct: 320 IYKETRNGML--GPDYSTKFSPWLASGSLSPRFIYEDVKRYENERQA 364
>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
Length = 515
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 99/209 (47%), Gaps = 41/209 (19%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF-------AL 98
+IW++ DLRV DH L A K QA ++P+Y FD R + S + +F ++
Sbjct: 28 VLIWYRNDLRVHDHEPLHLAVKAQAEIIPVYCFDPRQFGKTSFGFPKTGVFRAQFLLESV 87
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR SL++ GSDL++R+ E VI ELV+++ V+ EV + +A V+ TL K
Sbjct: 88 TDLRNSLRKLGSDLIVRYDFPETVIPELVKQLGIDEVYYYREVT---SEELA-VETTLEK 143
Query: 159 -VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-----------LQRPLTSPI 202
++ +D K W YD+ +L N +P +FRK P PI
Sbjct: 144 ALNPLDVSLK-SYWGATLYDLDDLPFSINRIPEVFTQFRKQVEKNGTIYASFPTPQRLPI 202
Query: 203 LP-------PTLAGAKLEADWGPLPTFDE 224
LP PTL LE P FD+
Sbjct: 203 LPQIEVGELPTLQKLGLET-----PQFDQ 226
>gi|413955779|gb|AFW88428.1| hypothetical protein ZEAMMB73_274298 [Zea mays]
Length = 396
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ A + GR + ++WF+ DLR+ DH AA +++P++VFD R + +
Sbjct: 97 PSGAPAASGRRRT-LVWFRADLRLHDHEPFHAAAGASSSLLPVFVFDPRDFGKSPSGFDR 155
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
++ ++ DLR+SL+ +G DL++R GR E VI EL A +V+A EV
Sbjct: 156 TGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDE 215
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ +E + K +G W + Y +++ L+D+P ++ FR+
Sbjct: 216 VR----TEERVQKAVEKEGINVKYFWGSTLYHVEDLPFRLDDMPSNYGGFRE 263
>gi|448592440|ref|ZP_21651547.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731445|gb|ELZ83029.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 496
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSN-------------EM 90
S +A++WF++DLR+ D+ LV A VVP+Y FD R + S
Sbjct: 3 SHTALVWFRRDLRLHDNEALVDACGADQVVPVYCFDPRDYGQQSYGGPGSFDFRKTGFHR 62
Query: 91 LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMA 150
L + ++ DLR SL+++GSDL++R GR E V+ ++ V A SV RQ+ +
Sbjct: 63 LRFRLESVADLRSSLRDRGSDLVVRVGRPEAVLPDVATAVGADSVSMHTWPTPEERQVES 122
Query: 151 IVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-------LQRPLTSPIL 203
V + L V + + P +L+ LP ++ FRK ++ PL +P L
Sbjct: 123 AVQQALDDVGVESRRFWGHTLTHPDDLPMDLDALPDTYTTFRKAVENDASIREPLHTPDL 182
Query: 204 P 204
P
Sbjct: 183 P 183
>gi|22327046|ref|NP_568461.2| cryptochrome DASH [Arabidopsis thaliana]
gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
Length = 526
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 30 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 87
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 88 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 147
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 148 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 205
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDEL 225
+S +P +L DWG +PT ++L
Sbjct: 206 CSIRSSTRIPLSLGPTPSVDDWGDVPTLEKL 236
>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
sativa Japonica Group]
gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
Length = 459
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ A + GR ++WF+ DLR+ DH L AA +++P++VFD R + +
Sbjct: 108 PSGAPAAAGRR-RTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDR 166
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
++ ++ DLR+ L+ +G DL++R GR E VI EL A +VFA EV
Sbjct: 167 TGPYRAGFLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVS--- 223
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ +E ++K +G W + Y + + L D+P ++ FR+
Sbjct: 224 -RDECRAEEKVSKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFRE 274
>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
Length = 525
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 29 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 86
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 87 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 146
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 147 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 204
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDEL 225
+S +P +L DWG +PT ++L
Sbjct: 205 CSIRSSTRIPLSLGPTPSVDDWGDVPTLEKL 235
>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 30 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 87
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 88 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 147
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 148 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 205
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDEL 225
+S +P +L DWG +PT ++L
Sbjct: 206 CSIRSSTRIPLSLGPTPSVDDWGDVPTLEKL 236
>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
Length = 451
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ A + GR ++WF+ DLR+ DH L AA +++P++VFD R + +
Sbjct: 100 PSGAPAAAGRR-RTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDR 158
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
++ ++ DLR+ L+ +G DL++R GR E VI EL A +VFA EV
Sbjct: 159 TGPYRAGFLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVS--- 215
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ +E ++K +G W + Y + + L D+P ++ FR+
Sbjct: 216 -RDECRAEEKVSKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFRE 266
>gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 566
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 36 AAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLEL- 93
+++T + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 74 SSSTKRNGKGITILWFRNDLRVLDNDALYKAWSSSDTLLPVYCLDPRLF--HTTHFFNFP 131
Query: 94 ---------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 132 KTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGAHTVFAHKETCSE 191
Query: 145 LRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP--- 197
+ +V++ L V +G +W + Y +L DLP + +FRK
Sbjct: 192 ELHVERLVNQGLKGVG--NGTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCS 249
Query: 198 -LTSPILPPTLAGAKLEADWGPLPTFDEL 225
+S +P +L DWG +PT ++L
Sbjct: 250 IRSSTRIPLSLGPIPSVDDWGDVPTLEQL 278
>gi|225437398|ref|XP_002270248.1| PREDICTED: blue-light photoreceptor PHR2 [Vitis vinifera]
Length = 454
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 65/357 (18%)
Query: 46 SAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVIFA 97
S ++WF+ DLRV D+ L +AS + +++P+Y FD R + S+ +I +
Sbjct: 119 SCIVWFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 178
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ DLR++L+++GSDL++R G+ E V+ EL + V A +++A EV + + ++ +
Sbjct: 179 VSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEAAMK 238
Query: 158 KVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWG 217
+ +G W + Y + +DLP F+ Q P + G ++
Sbjct: 239 E----EGVELKYFWGSTLYHV---DDLP-----FKMEQMPTNYGGFKEKVKGLEIRKT-- 284
Query: 218 PLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRL 277
+ T D+L+ + E +L++ LG SP L
Sbjct: 285 -IATLDQLRGLPARGDVEAGEIPSLLD--------------LG----------LSPSATL 319
Query: 278 DKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATL 337
++ T G+ VGG T ALQ ++ + Q K +S GA+F+
Sbjct: 320 PQNGMSTANGSLVGGET----EALQRLKKFAA-----ECQAQPPKGAANDSIYGANFSCK 370
Query: 338 FGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLM 394
P L +G +S R + ++ IK R SA+T WLM
Sbjct: 371 ISPWLAMGCLSPRSM-FDEIKKSASRT--------ISASTSKDGGSGQSDTGMNWLM 418
>gi|97047673|sp|Q84KJ5.2|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
Length = 569
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 73 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 130
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 131 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 190
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 191 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 248
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDEL 225
+S +P +L DWG +PT ++L
Sbjct: 249 CSIRSSTRIPLSLGPTPSVDDWGDVPTLEKL 279
>gi|110825715|sp|Q38JU2.2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum]
Length = 577
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 139/346 (40%), Gaps = 89/346 (25%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRI--------LSRYSNEMLELVIFA 97
A++WF+ DLRV D+ L+ A +A++P+Y D R+ + + + +I
Sbjct: 80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIEC 139
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV--------EYHLRQMM 149
L DL+++L ++G DL+I+ G+ E+++ L + KA +V+A +E + R +
Sbjct: 140 LNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQ 199
Query: 150 AIVDETLAKVSLVDGKPKIC----LWQTPFYDIKNL----NDLPVSHNEFRK----LQRP 197
+V + + G +W + Y I +L LP + +FRK +
Sbjct: 200 KLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKV 259
Query: 198 LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLS 257
LP + DWG +P ++S
Sbjct: 260 RNCTKLPTSFGPPPEVGDWGHVP----------------------------------QVS 285
Query: 258 KLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQ 317
+LG + ++ KG GG +A L + Y + D
Sbjct: 286 ELGLQQEK------------------VSKGMNFVGGESAALGRVHDYF------WKKDLL 321
Query: 318 ELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
++ ++ RN GA ++T F P L G +S R ++ E ++EKER
Sbjct: 322 KVYKETRNGML--GADYSTKFSPWLASGSLSPRFIYEEVKRYEKER 365
>gi|440749032|ref|ZP_20928282.1| Cryptochrome [Mariniradius saccharolyticus AK6]
gi|436482734|gb|ELP38832.1| Cryptochrome [Mariniradius saccharolyticus AK6]
Length = 475
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 133/332 (40%), Gaps = 78/332 (23%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFALE 99
++WF+ DLR+ D++ L +A K + V+P+Y FD R + + N + + +
Sbjct: 7 IVWFRNDLRIHDNVTLSMACEKAEEVIPVYCFDPRHFGEIDLGMEKMGNLRAKFLKETVS 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LR++L++ G+DL++ G E I L ++A ++F EEV +Q VD+ L
Sbjct: 67 ELRQNLQKLGADLVVLQGFPEKEIPNLAVSLQAEAIFFSEEVTDEEKQ----VDDALEST 122
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPIL----PPTLAGAK 211
+ G WQ + I +L P +FRK L P + K
Sbjct: 123 AWKKGIKTRSFWQHTLFHIDDLPFPIGQTPEVFTQFRKECEKFCKVRLHASTPNAINFPK 182
Query: 212 LEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQH 271
+E + G +P L EF E P + +L K
Sbjct: 183 IEIEKGQIPA---LSEFGLEEP-----------EDTGRGVLMFK---------------- 212
Query: 272 SPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDG 331
GG L LQ Y L+ D++ + L G
Sbjct: 213 --------------------GGEQEGLRRLQTYFWNLD--CLKDYKNTRNGLL------G 244
Query: 332 ASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
A++++ F P L LG +S R +++E ++EKER
Sbjct: 245 ANYSSKFSPWLALGCLSPRQIYWEVKRYEKER 276
>gi|212275814|ref|NP_001131008.1| uncharacterized LOC100192113 [Zea mays]
gi|194690696|gb|ACF79432.1| unknown [Zea mays]
gi|194701496|gb|ACF84832.1| unknown [Zea mays]
gi|414866740|tpg|DAA45297.1| TPA: photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ A + GR + ++WF+ DLR+ DH AA +++P++VFD R + +
Sbjct: 97 PSGAPAAAGRRRT-LVWFRADLRLHDHEPFHAAAGASSSLLPVFVFDPRDFGKSPSGFDR 155
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
++ ++ DLR+SL+ +G DL++R GR E VI EL A +V+A EV
Sbjct: 156 TGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDE 215
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ +E + K +G W + Y +++ L D+P ++ FR+
Sbjct: 216 VR----AEERVQKAVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFRE 263
>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
Length = 447
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ A + GR + ++WF+ DLR+ DH AA +++P++VFD R + +
Sbjct: 98 PSGAPAAAGRRRT-LVWFRADLRLHDHEPFHAAAGASSSLLPVFVFDPRDFGKSPSGFDR 156
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
++ ++ DLR+SL+ +G DL++R GR E VI EL A +V+A EV
Sbjct: 157 TGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDE 216
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ +E + K +G W + Y +++ L D+P ++ FR+
Sbjct: 217 VR----AEERVQKAVEKEGINVKYFWGSTLYHVEDLPFHLEDMPSNYGGFRE 264
>gi|284041014|ref|YP_003390944.1| DASH family cryptochrome [Spirosoma linguale DSM 74]
gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
Length = 487
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSN-EMLELVIF-------AL 98
+ WF+ DLR+ D+ G V A V+P++VFD R +R+S E + F ++
Sbjct: 5 LYWFRNDLRLHDNEGFVRALENADQVLPVFVFDPRWFARHSQLEFRRMSAFRANFLLESV 64
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR+SL+ +G+DL++R G+ +V+ EL E+ AT+V+A +EV + ET
Sbjct: 65 ADLRQSLRSRGADLIVRVGKPADVLAELAGEIGATAVYASKEVTHE-----ETTQETKLS 119
Query: 159 VSLVDGKPKICL-WQTPFYDIKNL----NDLPVSHNEFRKL--QRPLTSPILP-PTLAGA 210
L I L W + Y +++L + LP ++FR+ ++ + P PT
Sbjct: 120 TKLKPLNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTLPTRIEL 179
Query: 211 KLEADWGPLPTFDEL 225
D G +PT L
Sbjct: 180 VPNIDPGAIPTLSTL 194
>gi|428222871|ref|YP_007107041.1| DASH family cryptochrome [Synechococcus sp. PCC 7502]
gi|427996211|gb|AFY74906.1| cryptochrome, DASH family [Synechococcus sp. PCC 7502]
Length = 501
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 134/335 (40%), Gaps = 77/335 (22%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEM-------LELVI 95
S ++WF+ DLR DH L A + +A ++P+Y D R ++ S + ++
Sbjct: 2 SKKIIVWFRNDLRSHDHEALYRAIQTKAQIIPIYCIDPRHFAQTSFGFPKTGSFRAKFLL 61
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
+L DLR GS+L+IR G E VI EL +++AT V+ EV ++ A + +
Sbjct: 62 ESLTDLRNKFISLGSNLIIRQGLPELVIPELAAQIQATDVYFHAEVTSEEIKVEAKLIDN 121
Query: 156 LAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTS--PILP-PTLA 208
L K+S+ W Y L + LP FRK + P +P PT
Sbjct: 122 LKKISIKSE----SFWGNTLYHPDALPFAIDRLPELFTSFRKEVEKFCTVNPCVPIPTYL 177
Query: 209 GAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN 268
+ + + G +PT +EL E + D + + + +
Sbjct: 178 PSLQDLEIGEMPTLEEL---------------------GLEPAIADPRAVI-----KFIG 211
Query: 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAES 328
+ +RLD F+ +D T NA+L
Sbjct: 212 GETQALERLDYYFWQSDLIATYKETRNAML------------------------------ 241
Query: 329 RDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
G ++++ F P L LG IS R ++ + K+E+ER
Sbjct: 242 --GGNYSSKFSPWLALGCISPRYIYAQIQKYEQER 274
>gi|357112286|ref|XP_003557940.1| PREDICTED: blue-light photoreceptor PHR2-like [Brachypodium
distachyon]
Length = 447
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ A + GR + ++WF+ DLR+ DH L AA +++P++VFD R + +
Sbjct: 97 PSGAPGAAGRRRT-LVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDR 155
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
++ ++ DLR+SL+ +G DL++R GR E VI EL A +V+A EV
Sbjct: 156 TGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDE 215
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ V + + K +G W + Y + + L D+P ++ FR+
Sbjct: 216 CRTEDKVSQAIKK----EGVEVKYFWGSTLYHMDDLPFRLEDMPSNYGGFRE 263
>gi|333898405|ref|YP_004472278.1| DASH family cryptochrome [Pseudomonas fulva 12-X]
gi|333113670|gb|AEF20184.1| cryptochrome, DASH family [Pseudomonas fulva 12-X]
Length = 472
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS-------RYSNEMLELVIFALE 99
A++WFKQDLR+DDH L AA ++PLYV D +L R ++ +L
Sbjct: 3 ALLWFKQDLRLDDHPALQAALASNCLLPLYVLDPALLQFDEFGSRRIGVHRARFLLESLT 62
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
L +L+++GS L++ G+ E VI +LV + V +E+ R ++A V + L V
Sbjct: 63 ALDSALRQRGSKLLVVSGKPEEVIAQLVGQFDMRQVITLDEIAPQERAVIARVRDALGPV 122
Query: 160 SLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQ-------RPLTSP-ILPPTLAGAK 211
L + + L+ LP +++FR L +P ++P LPP G
Sbjct: 123 PLRTAQSNGLFSEAEL--PCPLDQLPTVYSQFRTLIDARQYVFQPQSAPDQLPPLPEGLD 180
Query: 212 LEADWGPLPTFDEL 225
+ A +G LPT +L
Sbjct: 181 INA-YG-LPTQSQL 192
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 136/333 (40%), Gaps = 81/333 (24%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHR-------ILSRYSNEMLELVIFALE 99
+IW++ DLR+ DH L K V+P Y FD R + N + ++ ++
Sbjct: 7 LIWYRNDLRIHDHEPLYQGIKEGDLVIPFYCFDIRQFQTTSYAFPKTGNFRGQFLLESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LR+SL++ GSDL++R G E +I EL++E++ +V+ EEV ++ V + L +
Sbjct: 67 NLRQSLQDLGSDLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQALKPL 126
Query: 160 SL-VDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKL-- 212
+ V G W Y +L N LP FRK + S + P + KL
Sbjct: 127 KVKVPG-----FWGATLYHWNDLPFEVNQLPEVFTSFRK-KVEKNSTVNPTLITPRKLLS 180
Query: 213 --EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQ 270
+ + G +P+ +EL L K S+ LN
Sbjct: 181 LPDVEIGNIPSLEEL-----------------------------GLKKSDSDSRGVLN-- 209
Query: 271 HSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRD 330
GG A + LQ Y + E +++E + +
Sbjct: 210 -------------------FKGGETAGIKRLQDY--FWERNCLKEYKETRNGML------ 242
Query: 331 GASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
GA +++ F P L G +S R ++ E K+E+ER
Sbjct: 243 GADYSSKFSPWLAHGCLSPRYIYEEVQKYEEER 275
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 142/335 (42%), Gaps = 85/335 (25%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEM-------LELVIFALE 99
+IWF+ DLR+ DH L A + +A ++P Y FD R S + ++ ++
Sbjct: 7 LIWFRNDLRLHDHEALNEALQEKADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR+SL++ GS+L+IR G E +I ++ + + T+++ EEV + + + LAK
Sbjct: 67 DLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYYHEEVTAEELTVEKRLKKALAKC 126
Query: 160 SLVDGKPKI-CLWQTPFYDIKNLN----DLPVSHNEFRKL--QRPLTSPILPPTLAGAKL 212
++ K+ W T Y NL LP FRK ++ +P+LP A L
Sbjct: 127 NI-----KVESFWGTTLYHPDNLPFEIYQLPELFTNFRKQVERKSTVAPVLP---APKSL 178
Query: 213 EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHS 272
PLP D I N+ + LS+LG
Sbjct: 179 P----PLPDLD-------------------IGNLPS-------LSELG------------ 196
Query: 273 PRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRN-AESRD- 330
L+ + F GG A LQ Y+ WQ + L+N E+R+
Sbjct: 197 ----LEPAVFEPRGVLKFQGGEIAGRERLQDYI----------WQ--KNCLKNYKETRNE 240
Query: 331 --GASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
GA +++ F P L G +S R ++ E K+E +R
Sbjct: 241 MLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEHQR 275
>gi|448381750|ref|ZP_21561726.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
gi|445662831|gb|ELZ15594.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
Length = 468
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
V W ++DLR DD+ GL AA+ ++VVPL+V D +L S + ++ ALEDLR +
Sbjct: 3 VFWHRRDLRPDDNRGLARAAAANESVVPLFVLDPTVLDHASPVRVATLLEALEDLRSQYR 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ-----MMAIVDETLAKVSL 161
E+GSDL++ G V+ E+ E AT+V E+ R+ A+ DE +A S+
Sbjct: 63 ERGSDLLVVRGEASAVVPEVAAEYDATTVVWNEDYSGLARERDRAVRAALEDEGIAAESV 122
Query: 162 VDG 164
D
Sbjct: 123 HDA 125
>gi|422304305|ref|ZP_16391652.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
gi|389790612|emb|CCI13529.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
Length = 485
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLR+ DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRLHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKSGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR+SL+ GS+L+IR G+ E +I +LV+E++ V+ +EV + V++ L+
Sbjct: 63 ADLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSG 122
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK-LQRPLTSPILPPTLAG-AKL 212
+ W Y + LN LP FRK ++R PT KL
Sbjct: 123 FPVQIK----TFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPTPKKLTKL 178
Query: 213 -EADWGPLPTFDEL 225
+ DWG LP+F++L
Sbjct: 179 PKIDWGNLPSFNDL 192
>gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa]
gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEM-- 90
P+ + + G + ++WF+ DLRV D+ L +A+ +V+P+Y FD R + S+
Sbjct: 113 PSDPSNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDK 172
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
+I ++ DLRK+L+ +GSDL++R GR E V+ EL + + A +V+A +
Sbjct: 173 TGPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHRD 227
>gi|428779828|ref|YP_007171614.1| DASH family cryptochrome [Dactylococcopsis salina PCC 8305]
gi|428694107|gb|AFZ50257.1| cryptochrome, DASH family [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 38/203 (18%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF-------ALE 99
+IW++ DLRV DH L A + Q ++P Y FD+R + + + F ++
Sbjct: 7 LIWYRNDLRVHDHEPLFRALQTQGQIIPFYCFDNREFGKTAFGFPKTGGFRAQFLRESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV---EYHLRQMMAIVDETL 156
+LR++L+++GS+L+IR G+ E +I +LV++++ T VF EV E H V++ L
Sbjct: 67 NLRENLQDKGSNLIIRCGQPETIISDLVKDLQITDVFFHSEVTAEETH-------VEKEL 119
Query: 157 AKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNE-------FRK-------LQRPLTSPI 202
K G W + +L+DLP++ +E +RK ++ SP
Sbjct: 120 EKKLTNYGVKLTSFWGAT---LDHLDDLPMTIDELPDVFTQYRKRVEKSSQIRASFPSPD 176
Query: 203 LPPTLAGAKLEADWGPLPTFDEL 225
P+L+ E + G LPT +EL
Sbjct: 177 RLPSLSS---EINCGDLPTLEEL 196
>gi|448666817|ref|ZP_21685462.1| photolyase/cryptochrome [Haloarcula amylolytica JCM 13557]
gi|445771948|gb|EMA23004.1| photolyase/cryptochrome [Haloarcula amylolytica JCM 13557]
Length = 456
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR+ D+ GL AA+ V+P+YV D +LS ++ + L+++ ++
Sbjct: 3 VFWHQRDLRIPDNRGLTAAAADDEVLPVYVLDTDLLSSAGKRQRAFLLAGVRALKQAYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
G DL++R G +V+ ++V+E A+ V+ E R VDE L SL D
Sbjct: 63 HGGDLLVREGSAVDVLSDIVKEYDASKVYYNEHYRPARRNRQRRVDEALPTKSLTD 118
>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354552505|ref|ZP_08971813.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353555827|gb|EHC25215.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
Length = 491
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYS-------NEMLELVIFALE 99
+IW++ DLR+ DH + A K A ++PLY FD R S N + ++ ++
Sbjct: 12 LIWYRNDLRIHDHEPMYQAIKEGALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESVA 71
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LR+SL++ GS+L++R G E +I EL++E++ +V+ EEV + V + L +
Sbjct: 72 NLRQSLQDLGSNLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQALKPL 131
Query: 160 SL-VDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKL-- 212
+ V G W + Y +L N LP FRK + +S + P + KL
Sbjct: 132 KVKVQG-----FWGSTLYHWDDLPFEVNQLPEVFTSFRK-KVEKSSTVNPTLITPIKLLP 185
Query: 213 --EADWGPLPTFDEL 225
+ G +PT +EL
Sbjct: 186 FPNIELGKIPTLEEL 200
>gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa]
gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 147/361 (40%), Gaps = 70/361 (19%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHRILS--------- 84
T+ + G+A++WF+ DLRV D+ + A ++V+P+Y D R+
Sbjct: 25 TSKMVKRNGKGAAIVWFRNDLRVLDNEVLFKAWVNSESVLPVYCVDPRLFQASTCYFGFP 84
Query: 85 RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
+ + ++ L DL+K+L ++G +L+IR G+ E +I L ++ + +V+A++E
Sbjct: 85 KTGGLRGQFIVECLVDLKKNLMKRGLNLLIRHGKPEEIIPALAKDFASHTVYAQKETCSE 144
Query: 145 LRQMMAIVDETLAKVSLVD-----------GKPKICL-WQTPFYDIKNL----NDLPVSH 188
+ +V + L +V L P + L W Y + +L N +P +
Sbjct: 145 EVNVEKLVSKALRRVHLPHSTGRSTSQGSANSPTLQLVWGGTMYHLDDLPFSTNSIPDVY 204
Query: 189 NEFRKLQRPLTS----PILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLIN 244
+FRK S + +L A DWG +P+ ++L +
Sbjct: 205 TQFRKSVEARCSIRSCAKISMSLGPAPRVEDWGCVPSIEQLG----------------LQ 248
Query: 245 NMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAY 304
A + +SK R L + + R+ + F+ GN + L+ L+ Y
Sbjct: 249 PQEAGFMFYLHVSK----GMRFLGGETAALSRVYEYFWKKASGNCF--LLSLCLDFLKIY 302
Query: 305 LRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERN 364
G + G ++T F P L G +S R ++ E ++EK R
Sbjct: 303 KETRNGML------------------GPDYSTKFSPWLASGSLSPRFIYEEVKRYEKGRL 344
Query: 365 A 365
A
Sbjct: 345 A 345
>gi|255076443|ref|XP_002501896.1| predicted protein [Micromonas sp. RCC299]
gi|226517160|gb|ACO63154.1| predicted protein [Micromonas sp. RCC299]
Length = 469
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 156/368 (42%), Gaps = 47/368 (12%)
Query: 34 PTAAATSKGRSGSAVIWFK-QDLRVDDHLGLVAAS---KYQAVVPLYVFDHRILSRYSNE 89
P AA++ +G+ ++W + DLRV DH GL AAS +VPL+VFD + +
Sbjct: 59 PVVAASAPTHTGAHIVWIRVGDLRVHDHPGLHAASLLPPSVPIVPLFVFDPEEAANTTPA 118
Query: 90 MLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMM 149
LV A+ +LR +L+++G+DL++R G + + +E A+S+ E+E+ R
Sbjct: 119 FQRLVHEAVRELRVALRDRGADLVVRVGSPATHVERIAKETGASSLSCRRELEWS-RMST 177
Query: 150 AIVDETLAKVSLVDGKPKICLWQTPFYDI-------------------KNLNDLP-VSHN 189
A+ + V+ I W P + + P + N
Sbjct: 178 HRAALAAARGAGVE---SIHEWSAPLRECADAVRATEEAYLTTEARNERGARVAPWATEN 234
Query: 190 EFRKLQRPLTSPILPPT-LAGAK-----LEADW-GPLPTFDELKEFVNENPWKLEESWTL 242
E+ + + P+ PP LAG K LE + G +P D + + + +E +
Sbjct: 235 EYIAARGAVAPPLPPPQRLAGYKTRGSELEDPFVGAMPELDSTRAWARLPDREEDERYDE 294
Query: 243 INNMSAETILTDKLSKLGKRSKRNLNN--QHSPRKRL-----DKSFFVTDKGNTVGGGTN 295
+ + +L+K K R N S + L + + + GG
Sbjct: 295 AVAAARAALDDPELAKRRKGRARTDNAFVMFSEERMLALAAEEAEVSIPPVPFRMPGGEA 354
Query: 296 AVLNALQAYLRYLEGTVRDDWQELQEK-LRNAESRDGASFATLFGPALCLGIISRRGVHY 354
L +L + T +++++ E+ L N S +F LFG +L LG +S R V+
Sbjct: 355 ETLANFAGFLDFYTATSNKEFRKMYERVLENKLS----AFFRLFGGSLALGTLSPRTVYD 410
Query: 355 EAIKFEKE 362
A+++E +
Sbjct: 411 VAMRWEAD 418
>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 486
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 26/199 (13%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHR--------ILSRYSNEMLELVIF 96
+ ++WF+ DLR+ DH L A + ++PLY D R + R S + ++
Sbjct: 2 TVLLWFRTDLRLLDHQPLTRACQQGSPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLLE 61
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+L DLR+ L+ +GSDL+IR G+ E VI L +E +V+A EEV +++ A V+ L
Sbjct: 62 SLADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVAAAVERAL 121
Query: 157 AKVSL---VDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRKL---QRPLTSPILPPT 206
+ + VD W Y ++ L+ LP FRK P+ P+ P+
Sbjct: 122 RSLGIRLQVD-------WGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDPLPIPS 174
Query: 207 LAGAKLEADWGPLPTFDEL 225
+ D GPLPT L
Sbjct: 175 IPPLPSGLDPGPLPTLASL 193
>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNEM-- 90
P+ A + GR + ++WF+ DLR+ DH AA +++P++VFD R + +
Sbjct: 97 PSGAPAAAGRRRT-LVWFRADLRLHDHEPFHAAAGASSSLLPVFVFDPRDFGKSPSGFDR 155
Query: 91 -----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
++ ++ DLR+SL+ +G DL++R G E VI EL A +V+A EV
Sbjct: 156 TGPYRANFLLDSVADLRRSLRARGGDLVVRVGMPEVVIPELARAAGAEAVYAHGEVSRDE 215
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ +E + K +G W + Y +++ L D+P ++ FR+
Sbjct: 216 VR----AEERVQKAVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFRE 263
>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|376007766|ref|ZP_09784952.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|423063001|ref|ZP_17051791.1| cryptochrome DASH family [Arthrospira platensis C1]
gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|375323871|emb|CCE20705.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|406715580|gb|EKD10734.1| cryptochrome DASH family [Arthrospira platensis C1]
Length = 486
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 143/332 (43%), Gaps = 79/332 (23%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF-------ALE 99
++W++ DLR+ DH L A+ QA ++PLY FD R ++ S ++ F ++
Sbjct: 9 ILWYRHDLRLHDHEPLDLATSTQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGKFLLESVA 68
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR +L++ GS+L++R G E VI +LV+++ +V+ +EV + +A V+ L K
Sbjct: 69 DLRHNLQKIGSNLLVRIGEPETVIFDLVKQLNIDAVYYHKEVT---TEELA-VERALEKA 124
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEAD 215
G W Y K L LP FRK Q S I PP +
Sbjct: 125 LTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRK-QVEKKSIIYPPYTPPKQ---- 179
Query: 216 WGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRK 275
LPTF +++ E P T+ ++KL S+ L+
Sbjct: 180 ---LPTFPDIEP--GEIP----------------TLAELGITKLPFDSRAVLD------- 211
Query: 276 RLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRN-AESRD---G 331
FV GG A L L Y WQ ++ L+N ++R+ G
Sbjct: 212 ------FV--------GGETAGLTRLNDYF----------WQ--RDCLKNYKQTRNGMLG 245
Query: 332 ASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
+ +++ F P L G +S R ++ + +E++R
Sbjct: 246 SDYSSKFSPWLANGCLSPRWIYQQVCDYEQQR 277
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 135/337 (40%), Gaps = 89/337 (26%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEM-------LELVIFALE 99
+IWF+ DLR+ DH L A + A V+P Y FD R + + ++ ++
Sbjct: 4 LIWFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESVA 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF------AEE-EVEYHLRQMMAIV 152
DLR+SL+ + SDL++R G E V+ EL + +K +V+ AEE EVE LR +A +
Sbjct: 64 DLRQSLRGKQSDLILRQGHPETVLPELAQALKVETVYFNREVTAEEIEVENRLRSALADL 123
Query: 153 D-ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAK 211
E L S P+ Q PF + +LP +FRK P
Sbjct: 124 GIECLRFWSSTLFHPE----QLPF----PIRELPEVFTQFRKQVEKSAKPK--------- 166
Query: 212 LEADWGPLPTFDELKEFVNENPWKLE--ESWTLINNMSAETILTDKLSKLGKRSKRNLNN 269
P PT L + P +L E W L +
Sbjct: 167 -----APFPTPQSLSTLPDIAPGELPQLEDWGL--------------------------S 195
Query: 270 QHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESR 329
P R F GG A L LQ Y+ W++ + K R E+R
Sbjct: 196 SPEPDARAMIQF---------SGGETAALARLQDYI----------WEQDRLK-RYKETR 235
Query: 330 DG---ASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
+G + +T F P L LG +S R +H + +E++R
Sbjct: 236 NGMLQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDR 272
>gi|425444341|ref|ZP_18824394.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
gi|389730294|emb|CCI05405.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
Length = 485
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+LR+SL+ GS+L+IR G+ E +I +LV+E++ V+ +EV + V++ L++
Sbjct: 63 ANLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSR 122
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK-LQR--PLTSPILPPTLAGAK 211
V W Y + LN LP FRK ++R + + P
Sbjct: 123 VP----AQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKL 178
Query: 212 LEADWGPLPTFDEL 225
+ DWG LP+ ++L
Sbjct: 179 PKIDWGNLPSLNDL 192
>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
Length = 584
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 29/203 (14%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------RYSNEMLELV 94
SG A++WF+ DLRV D+ LV A + QAV+P+Y D R+ + + +
Sbjct: 106 SGVAIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 165
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE-----------VEY 143
I L DL+++L +G +L+I+ G+ E ++ L + +A +V+A +E V
Sbjct: 166 IECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVERLVRN 225
Query: 144 HLRQMMAIVDETLAKVSLVDGKPKICL-WQTPFYDIKNL----NDLPVSHNEFRK-LQRP 197
LRQ++ + PK+ L W + Y I++L + LP + +FRK ++
Sbjct: 226 GLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRKSVESK 285
Query: 198 LTSPIL--PPTLAGAKLE-ADWG 217
T I PTL G DWG
Sbjct: 286 CTIRICIRTPTLLGPPPNIEDWG 308
>gi|406662895|ref|ZP_11070977.1| Cryptochrome DASH [Cecembia lonarensis LW9]
gi|405553063|gb|EKB48369.1| Cryptochrome DASH [Cecembia lonarensis LW9]
Length = 474
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 64/326 (19%)
Query: 47 AVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYS-------NEMLELVIFAL 98
++WF+ DLRV DH L AS K + V+P+Y FD R + + N +I ++
Sbjct: 5 VIVWFRNDLRVHDHAPLFYASQKAEEVIPVYCFDPRNFGKVNLEIDKTGNHRARFLIESV 64
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
++L+ +L G DL+I G+ E ++ ++ ++ + ++F EEV ++ V+ L
Sbjct: 65 DNLKNNLVNLGGDLVILQGKPEELLVDIAKKYQVDAIFFSEEVTSEEKK----VELNLEG 120
Query: 159 VSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRP-LTSPILPPTLAGAKLEADWG 217
+ G WQ+ Y N+ DLP F +Q P + + AK++
Sbjct: 121 HAWKHGIKTTAYWQSSLY---NIQDLP-----FPVMQTPEVFTQFRKECEKFAKVQP--- 169
Query: 218 PLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRL 277
LPT ++K F N +N++ +LS G + HS R L
Sbjct: 170 TLPTPKQIK-FPNN-----------LNDLGE----MPELSTFGLKEP-----DHSSRSVL 208
Query: 278 DKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATL 337
GG + LQAY + E + ++E + L G+ +++
Sbjct: 209 -----------VFKGGETEGIRRLQAY--FWEKDLLKVYKETRNGLL------GSDYSSK 249
Query: 338 FGPALCLGIISRRGVHYEAIKFEKER 363
F L +G +S R ++ E ++EKER
Sbjct: 250 FSAWLSMGCLSPRFIYEEVKRYEKER 275
>gi|449437082|ref|XP_004136321.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 31/222 (13%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------R 85
++++ K G A++WF+ DLRV D+ L A +AV+P+Y D R+ +
Sbjct: 40 SSSSGFKRGKGVAIVWFRNDLRVLDNEALNKAWISSEAVLPVYCVDPRLFGSTCYFGFPK 99
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+ ++ L DL+++L ++G +L+I+ G+ E ++ L + + A +VFA+ E
Sbjct: 100 TGALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALGAHTVFAQMETCSEE 159
Query: 146 RQMMAIVDETLAKVSLVDG-------------KPKICL-WQTPFYDIKNL----NDLPVS 187
+ +V + L V L P L W T Y I +L N LP
Sbjct: 160 LYVEKMVSKGLKTVVLSPTSEKSASAKSSAARSPTFQLVWGTTMYHIDDLPFDTNSLPDV 219
Query: 188 HNEFRK---LQRPLTSPI-LPPTLAGAKLEADWGPLPTFDEL 225
+ +FRK + + I LP L A DWG +P+ D+L
Sbjct: 220 YTQFRKSVEAKCKIRDCIRLPALLGPAPSIDDWGSVPSLDKL 261
>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 50 WFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLRV D+ L +A+ + +V+P+Y FD R + S+ + +I ++ +L
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 179
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
RK+L+ +GS+L++R G+ E V+ EL +E+ A +V+A EV + + + ET K
Sbjct: 180 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKI-ETAMKEEG 238
Query: 162 VDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR-KLQR 196
V+ K W + Y + +L DLP ++ F+ K+Q+
Sbjct: 239 VEVK---YFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQK 275
>gi|449505505|ref|XP_004162492.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 31/222 (13%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------R 85
++++ K G A++WF+ DLRV D+ L A +AV+P+Y D R+ +
Sbjct: 40 SSSSGFKRGKGVAIVWFRNDLRVLDNEALNKAWISSEAVLPVYCVDPRLFGSTCYFGFPK 99
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+ ++ L DL+++L ++G +L+I+ G+ E ++ L + + A +VFA+ E
Sbjct: 100 TGALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALGAHTVFAQMETCSEE 159
Query: 146 RQMMAIVDETLAKVSLVDG-------------KPKICL-WQTPFYDIKNL----NDLPVS 187
+ +V + L V L P L W T Y I +L N LP
Sbjct: 160 LYVEKMVSKGLKTVVLSPTSEKSASAKSSAARSPTFQLVWGTTMYHIDDLPFDTNSLPDV 219
Query: 188 HNEFRK---LQRPLTSPI-LPPTLAGAKLEADWGPLPTFDEL 225
+ +FRK + + I LP L A DWG +P+ D+L
Sbjct: 220 YTQFRKSVEAKCKIRDCIRLPALLGPAPSIDDWGSVPSLDKL 261
>gi|15226633|ref|NP_182281.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
gi|116248577|sp|Q8LB72.2|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
Length = 447
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 50 WFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLRV D+ L +A+ + +V+P+Y FD R + S+ + +I ++ +L
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 179
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
RK+L+ +GS+L++R G+ E V+ EL +E+ A +V+A EV + + + ET K
Sbjct: 180 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKI-ETAMKEEG 238
Query: 162 VDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR-KLQR 196
V+ K W + Y + +L DLP ++ F+ K+Q+
Sbjct: 239 VEVK---YFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQK 275
>gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367]
Length = 190
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 49 IWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALED 100
+WF+ DLRV D+ L AA ++ +V+P+Y FD R + S+ +I ++ D
Sbjct: 1 VWFRNDLRVHDNECLNAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVAD 60
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L+K+L+ +GSDL++R G+ E V+ EL + V A +V+A EV Y + +E + V
Sbjct: 61 LKKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKG----EEKIEGVM 116
Query: 161 LVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+G W + Y + + L +P ++ FR+
Sbjct: 117 KDEGVDVKFFWGSTLYHVDDLPFKLEGMPTNYGGFRE 153
>gi|428773120|ref|YP_007164908.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
gi|428687399|gb|AFZ47259.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
Length = 486
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 136/350 (38%), Gaps = 107/350 (30%)
Query: 45 GSAVIWFKQDLRVDD----HLGLVAASKYQAVVPLYVFDHRILSRYS-------NEMLEL 93
+ +IWF+ DLR+ D + + A KY ++P Y FD R ++ S +L
Sbjct: 2 ANILIWFRNDLRLHDQKCIYRAISAEPKY--IIPFYCFDDRTYTQTSFGFPKTGKYRAKL 59
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQM----M 149
+I ++ DL+KSL++ GS+L+++ G+ E I ++VE+ + T V+ +E R M
Sbjct: 60 IIESVTDLQKSLQKIGSNLVVKKGKTEEEISKIVEKYQITEVYFSKEATAEERAMEKKLT 119
Query: 150 AIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-----------L 194
I+D+ K+ WQ+ Y +L +LP FRK
Sbjct: 120 KILDKKQVKIK--------TFWQSTLYFPDDLPFSIKELPDLFTNFRKQVEKKAEVYNTF 171
Query: 195 QRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+ P + P LP + D G +PT +L LEE
Sbjct: 172 KTPSSLPPLPKNI-------DIGKIPTLSDL---------GLEE---------------- 199
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGN-TVGGGTNAVLNALQAYLRYLEGTVR 313
F D+G T GG + LQ YL +
Sbjct: 200 --------------------------FTKDDRGVLTFMGGETEAIKRLQYYLWETDNISN 233
Query: 314 DDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
+K RN G +++ F P L G +S R ++ E K+E+ER
Sbjct: 234 ------YKKTRNGML--GGDYSSKFSPWLAQGCLSPRLIYTEIEKYEQER 275
>gi|425455819|ref|ZP_18835530.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
gi|389803212|emb|CCI17833.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
Length = 485
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR+SL+ S+L+IR+G+ E +I +LV+E++ V+ +EV + V++ L++
Sbjct: 63 ADLRQSLESLDSNLIIRWGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSR 122
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK-----LQRPLTSPILPPTLAG 209
V + W Y + LN LP FRK Q T P
Sbjct: 123 VPVQIK----TFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIKATYPTPKKLTKL 178
Query: 210 AKLEADWGPLPTFDEL 225
K+E G LP+F++L
Sbjct: 179 PKIEL--GNLPSFNDL 192
>gi|427722807|ref|YP_007070084.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
gi|427354527|gb|AFY37250.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
Length = 518
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 32/201 (15%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS-------RYSNEMLELVIFALE 99
++W+++DLR+ DH L+ A + QA ++PLY FD R + + N + ++ ++
Sbjct: 7 LLWYRRDLRLHDHKPLITALQQQAEIIPLYCFDSREFTQTAFGFPKTGNFRGQFLLESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LR+SL+++GS+L+I G+ E +I +L + + +V+ EV + + + L++
Sbjct: 67 NLRRSLQQKGSNLLIYSGKPEVIISQLCRQFQIDTVYWHREVTAEETHIEKRLQKNLSQQ 126
Query: 160 SLVDGKPKICLWQTPFYDIK----NLNDLPVSHNEFRK-----------LQRPLTSPILP 204
++ G W T ++ + + +P +FRK L P P LP
Sbjct: 127 NVSVG----TFWGTTLHEPEEMPFGIPQVPEVFTQFRKTVEKYANIVQALPTPQELPPLP 182
Query: 205 PTLAGAKLEADWGPLPTFDEL 225
LA A G LPT +L
Sbjct: 183 SELAMAL-----GELPTLKQL 198
>gi|448633639|ref|ZP_21674138.1| photolyase/cryptochrome [Haloarcula vallismortis ATCC 29715]
gi|445750330|gb|EMA01768.1| photolyase/cryptochrome [Haloarcula vallismortis ATCC 29715]
Length = 456
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR+ D+ GL AA+ V+P+YV D +LS ++ + L+ + ++
Sbjct: 3 VFWHQRDLRIPDNRGLTAAAADDEVLPVYVLDTDLLSNIGKRQRAFLLAGVRALKGAYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
G DL++R G +V+ ++V+E A V+ E R VDE L SL D
Sbjct: 63 HGGDLLVRKGTAVDVLSDVVDEYDADRVYYNEHYRPARRNRQRRVDEALPTKSLTD 118
>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|97047786|sp|Q3IPX9.1|CRYD_NATPD RecName: Full=Cryptochrome DASH
gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 474
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 41/213 (19%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEML-------ELVIF- 96
+AV+WF+ DLRV D+ L A + + V+P+Y FD RY+ +F
Sbjct: 3 TAVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDP---DRYTESEYGPPKTGGHRAVFR 59
Query: 97 --ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
A+ DLR SL+++G DL++R GR V+ EL + A +V+A+ + R+ A V
Sbjct: 60 RQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVAS 119
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNE-------FRK-------LQRPLTS 200
L I L Q + + + +DLP + +RK ++ P ++
Sbjct: 120 ALDDAG-------IALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSA 172
Query: 201 PILPPTLAGAKLEADWGPLPTFDELKEFVNENP 233
P PT G GP+PT + L V+E P
Sbjct: 173 PETVPTPDGLTP----GPVPTVESLG--VSEPP 199
>gi|409098421|ref|ZP_11218445.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 424
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 23/199 (11%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS-------RYSNEMLELVI 95
S ++WF+ DLR+ D+ LV A SK +++P+Y+ D R + N + ++
Sbjct: 2 SKKILVWFRNDLRLHDNEMLVEAISKSDSILPVYILDPRSFGETKYGTLKTGNIRAQFIL 61
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
++ LR SLK+ G +L+I G E++I LV+E + T V+ EV + +V+
Sbjct: 62 ESVLGLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEVYHHREVAREETHVSTLVENA 121
Query: 156 LAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEF-RKLQRPLTSPILPPTLAGA 210
L K+ + K + T Y+ ++L D+P + N+F +K++R S I P LA
Sbjct: 122 LWKLRV---NLKHFIGHT-LYNKEDLPFPIKDIPDAFNQFKKKIER--DSIIKPCFLAPD 175
Query: 211 KLEA----DWGPLPTFDEL 225
++ DWG L + +EL
Sbjct: 176 RINVAEVIDWGTLSSLEEL 194
>gi|399576573|ref|ZP_10770328.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
gi|399238017|gb|EJN58946.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
Length = 492
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 134/333 (40%), Gaps = 62/333 (18%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS----------RYSNEMLELVI 95
+A+IWF++DLR+ D+ LV A++ +A++P+Y FD R RY
Sbjct: 5 TALIWFRRDLRLHDNPVLVDAARAEALLPVYCFDPREYGTADFGGPDSFRYEKTGGHRAQ 64
Query: 96 F---ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
F ++ DLR SL+ GSDL++ GR E V+ LV A +VF + R V
Sbjct: 65 FRRESVTDLRDSLRAAGSDLLVAHGRPETVLPALVSTTDADAVFFQTLPTSEERTTERAV 124
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKL 212
L + +G LW + + +L DLP + + P + + A L
Sbjct: 125 TARLRE----EGVAVHRLWT---HTLVHLADLPTPYTDIDDTFTPFRKRVESSSTARDPL 177
Query: 213 EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHS 272
+ +PT L + E+ ++ + E D+
Sbjct: 178 D-----VPTLPPLPSATSSTKRATFETLPSLSTLGVENPPVDE----------------- 215
Query: 273 PRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGA 332
R+ LD GG +A + L AYL D + ++ RN GA
Sbjct: 216 -RRSLD-----------FDGGESAGRDRLAAYL------WDHDCLRVYKETRNGLL--GA 255
Query: 333 SFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
+++ F P L G +S R V+ E ++E ER A
Sbjct: 256 DYSSKFSPWLNEGCLSPRFVNAEVDRYEAERVA 288
>gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818]
Length = 552
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 28/168 (16%)
Query: 47 AVIWFK-QDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRYSN-----------EMLE 92
AV+WF+ DLR+ DH L+ A+K VVP+Y FD R + + +
Sbjct: 12 AVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDPRQVGPAAKTRCGQFPKCGWQRTR 71
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE-------VEYHL 145
++ +EDLR++L+ GS+L++R G E VI ++V AT VF ++E VE+ L
Sbjct: 72 FIVECVEDLRRNLQRLGSNLVVRVGEPEEVIPDIVSITGATEVFGQKEVCSEETGVEHRL 131
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK 193
+ +++ ++L G +C Y+ ++ +DLP ++FRK
Sbjct: 132 AKRLSV------PLTLRWGAITLCHRDDLPYE-RSCSDLPGVFSQFRK 172
>gi|387815440|ref|YP_005430930.1| DNA photolyase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381340460|emb|CCG96507.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase) [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 514
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLR 102
+ V+WFK+DLRV+DH L AA + Q VVPLYV + + S + V +LE LR
Sbjct: 11 AVVVWFKRDLRVEDHGPLYAAVQSGQPVVPLYVVEPEYWQQPDTSRRQWQFVAESLESLR 70
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
K LK GSDL+I G V + +L ++ T VF +E
Sbjct: 71 KQLKRLGSDLLIAHGEVIRTLDDLKQQYGITQVFCHQET 109
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 21/163 (12%)
Query: 46 SAVIWFKQDLRVDDH--LGLVAASKYQAVVPLYVFDHRIL-------SRYSNEMLELVIF 96
+A+IWF+ DLR+ DH L +A YQ ++P Y FD R ++ + +I
Sbjct: 9 TALIWFRNDLRIHDHAILARIAEGDYQRIIPFYCFDDRQFQTTSFGFAKTGKYRAKFLIE 68
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV-FAEEEVEYHLRQMMAIVDET 155
++ DLR+SL++ G+DL++R G E +I ++ ++ T F++E E ++ V++
Sbjct: 69 SVADLRESLQKLGTDLIVRKGIPEQIIPDIAKQYNVTEFYFSQEATEEEIK-----VEKR 123
Query: 156 LAK-VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK 193
L K + + + K C WQ+ Y +L +LP FRK
Sbjct: 124 LIKALKQLHIQVKSC-WQSTLYQPDDLPFSIENLPDLFTHFRK 165
>gi|218245570|ref|YP_002370941.1| DASH family cryptochrome [Cyanothece sp. PCC 8801]
gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
Length = 488
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYS-------NEMLELVIFALE 99
+IW++ DLR+ DH + A K +A ++P Y FD+R S N + ++ +++
Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKQKAQIIPFYCFDNRQFKTTSFGFPKTGNFKSQFLLQSID 68
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LRK+L++ GS+L++R G E +I E+ +E+ +V+ +EV ++ +++ L ++
Sbjct: 69 NLRKNLQQLGSNLVVRRGYPEKIIPEICKELAIDAVYFHQEVTSEEIKVETALEKALTQM 128
Query: 160 SLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRKL--QRPLTSPILP-PTLAGAKL 212
V P W T Y + L ++P FRK ++ L + P P +
Sbjct: 129 G-VQLNP---FWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFPTPKKLPSLP 184
Query: 213 EADWGPLPTFDEL 225
D G +PT EL
Sbjct: 185 NLDLGNIPTLAEL 197
>gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
[Marinobacter aquaeolei VT8]
Length = 505
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLR 102
+ V+WFK+DLRV+DH L AA + Q VVPLYV + + S + V +LE LR
Sbjct: 2 AVVVWFKRDLRVEDHGPLYAAVQSGQPVVPLYVVEPEYWQQPDTSRRQWQFVAESLESLR 61
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
K LK GSDL+I G V + +L ++ T VF +E
Sbjct: 62 KQLKRLGSDLLIAHGEVIRTLDDLKQQYGITQVFCHQET 100
>gi|257058615|ref|YP_003136503.1| DASH family cryptochrome [Cyanothece sp. PCC 8802]
gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
Length = 488
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYS-------NEMLELVIFALE 99
+IW++ DLR+ DH + A K +A ++P Y FD R S N + ++ +++
Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKKKAQIIPFYCFDDRHFKTTSFGFPKTGNFRSQFLLQSID 68
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LRK+L++ GS+L+IR G E +I E+ +E+ +V+ +EV ++ +++ L ++
Sbjct: 69 NLRKNLQQLGSNLVIRRGYPEKIIPEICQELAIDAVYFHQEVTSEEIKVETALEKALTQM 128
Query: 160 SLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRKL--QRPLTSPILP-PTLAGAKL 212
V P W T Y + L ++P FRK ++ L + P P +
Sbjct: 129 G-VKLNP---FWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFPTPKKLPSLP 184
Query: 213 EADWGPLPTFDEL 225
D G +PT EL
Sbjct: 185 NLDLGNIPTLAEL 197
>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
Length = 345
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM------ 90
A G ++++WF+ DLRV D+ L AA+K +V+P+Y FD + + ++
Sbjct: 13 AAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSASGFDKTGPY 72
Query: 91 -LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMM 149
+ ++ + +LR +L+E+GS+L++R G V+ + + V A ++A +EV M
Sbjct: 73 RAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELGME 132
Query: 150 AIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPL---TSPI 202
V L K VD K W + + + +L D+P ++ FR + + +
Sbjct: 133 DKVTSAL-KDQNVDVK---FFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATE 188
Query: 203 LPPTLAGAKLEAD--WGPLPTFDEL 225
P L G + D G +P+ EL
Sbjct: 189 APKQLKGLPSQGDVKAGDIPSLQEL 213
>gi|433591509|ref|YP_007281005.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|448333271|ref|ZP_21522481.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|433306289|gb|AGB32101.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|445623512|gb|ELY76922.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
Length = 467
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 86/185 (46%), Gaps = 12/185 (6%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
V W ++DLR DD+ GL AA+ + VVPL+V D +L S + ++ ALEDLR +
Sbjct: 3 VFWHRRDLRPDDNRGLARAAAADEPVVPLFVLDPTVLDYASPVRVATLLEALEDLRSQYR 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ-----MMAIVDETLAKVSL 161
E+GSDL++ G + E+ E AT+V E+ R+ A+ DE +A S+
Sbjct: 63 ERGSDLLVVRGEASAAVPEVATEHDATTVVWNEDYSGLARERDRAVRAALEDEGIAAESV 122
Query: 162 VDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWG-PLP 220
D + P N D + F K R P A A L A G P+P
Sbjct: 123 HD-----AIHHEPGSITPNQGDHYSVFSYFWKKWRDRDKREPAPEPAAADLAAVSGEPIP 177
Query: 221 TFDEL 225
T +L
Sbjct: 178 TLADL 182
>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
Length = 345
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM------ 90
A G ++++WF+ DLRV D+ L AA+K +V+P+Y FD + + ++
Sbjct: 13 AAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSASGFDKTGPY 72
Query: 91 -LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMM 149
+ ++ + +LR +L+E+GS+L++R G V+ + + V A ++A +EV M
Sbjct: 73 RAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELGME 132
Query: 150 AIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPL---TSPI 202
V L K VD K W + + + +L D+P ++ FR + + +
Sbjct: 133 DKVTSAL-KDQNVDVK---FFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATE 188
Query: 203 LPPTLAGAKLEAD--WGPLPTFDEL 225
P L G + D G +P+ EL
Sbjct: 189 APKQLKGLPSQGDVKAGDIPSLQEL 213
>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
Length = 525
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 144/339 (42%), Gaps = 81/339 (23%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFD--------HRILSRYSNEMLELVIF 96
+A+ + DLR D+ L A S +VPLY FD H + L ++
Sbjct: 8 TALCLLRNDLRCHDNEVLHWAQSHADRIVPLYCFDPRHYAQTYHYNFPKTGPFRLRFLLE 67
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVK--ATSVFAEEEVEYHLRQMMAIVDE 154
+++DLR++LK++GS+L++R G+ E+V+R+L+ ++ A+ F EE + L V++
Sbjct: 68 SVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGSVASVSFHEEATKEELD-----VEK 122
Query: 155 TLAKVSLVDGKPKICLWQTPFYD-----IKNLNDLPVSHNEFRKL--QRPLTSPILPPTL 207
L +V G W + Y K+++ LP + +FRK + P+L
Sbjct: 123 ALIRVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKAVESQARVRPVL---- 178
Query: 208 AGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETI-LTDKLSKLGKRSKRN 266
K+E LP ++EE N S E +T+ L
Sbjct: 179 ---KMEGQMKSLPP-------------EIEEG----NIPSLEDFGMTEPL---------- 208
Query: 267 LNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNA 326
R +S F+ GG L LQ Y + E + ++E + L
Sbjct: 209 ---------RDPRSAFL------CSGGETQALMRLQHY--FWETNLVASYKETRNGLI-- 249
Query: 327 ESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
G ++T F P L LG IS R ++ + K+EKER A
Sbjct: 250 ----GLDYSTKFAPWLALGCISPRYIYDQIQKYEKERTA 284
>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
Length = 448
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 16/155 (10%)
Query: 50 WFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLRV D+ L +A+ + +V+P+Y FD R + S+ + +I ++ +L
Sbjct: 121 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 180
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
RK+L+ +GS+L++R G+ E V+ EL +E+ A +V+A EV + + ++ + +
Sbjct: 181 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIESAMKE--- 237
Query: 162 VDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR 192
+G W + Y + +L DLP ++ F+
Sbjct: 238 -EGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFK 271
>gi|409098424|ref|ZP_11218448.1| deoxyribodipyrimidine photo-lyase [Pedobacter agri PB92]
Length = 134
Score = 69.3 bits (168), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKS 104
+ WF++DLR++D+ GL A K V+PL++FD IL + ++ + + ++D++++
Sbjct: 7 IFWFRRDLRLEDNAGLYHALKSDNPVIPLFIFDKNILDKLPKNDARVTFIYQTIKDIKET 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
L+++GSDL++++G+ E + E+++E + VF + E + R+
Sbjct: 67 LQKKGSDLLVKYGKPEKIWPEILKEYEVKEVFTNHDYEPYARE 109
>gi|448734435|ref|ZP_21716661.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
gi|445800483|gb|EMA50838.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
Length = 479
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 135/335 (40%), Gaps = 71/335 (21%)
Query: 44 SGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLEL--------- 93
+ +AV+WF+ DLR D+ LV A +Y V+P+Y FD R + M +L
Sbjct: 2 TDTAVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPR---EFDETMFDLPKTGPYRAR 58
Query: 94 -VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
++ ++ DLR+SL++ G DL++R G+ ENV+ +L E A + V YH
Sbjct: 59 FLVDSVRDLRRSLRQAGGDLLVRQGKTENVVPQLAAEHGA------DIVHYH---TTPAT 109
Query: 153 DETLAKVSLVDGKPKICLWQTPFYD--IKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGA 210
+E + + DG + + F+ + ++ DLP P +
Sbjct: 110 EERAIENGVTDGLDEHGIDSRDFWGKTLYHVEDLPTRVERIDDTFTPWRQTVEDGATVRD 169
Query: 211 KLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQ 270
L+A PT L E + P TI T LG +
Sbjct: 170 PLDA-----PTSIVLPESAGDEP---------------GTIPT--PGDLGIEER------ 201
Query: 271 HSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRD 330
P R F GG +A L L Y+ EG +++E + L
Sbjct: 202 -EPDDRAAIEFV---------GGESAGLRRLTEYV--WEGDHLREYKETRNGLL------ 243
Query: 331 GASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
GA +++ F L +G +S R +H ++E+ER A
Sbjct: 244 GADYSSKFSAWLAVGCLSPRLIHEHVERYERERVA 278
>gi|448677972|ref|ZP_21689162.1| photolyase/cryptochrome [Haloarcula argentinensis DSM 12282]
gi|445773647|gb|EMA24680.1| photolyase/cryptochrome [Haloarcula argentinensis DSM 12282]
Length = 456
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR+ D+ GL AA+ V+P+YV D +L+ ++ + L+++ ++
Sbjct: 3 VFWHQRDLRIPDNRGLTAAAADDEVLPVYVLDTDLLANIGKRQKAFLLAGVRALKQAYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
G DL++R G V+ ++V+E A V+ E R VDE L SL D
Sbjct: 63 HGGDLLVRKGSAVEVLSDVVDEYDADRVYYNEHYRPVRRNRQRRVDEALPTKSLTD 118
>gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila]
gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila SB210]
Length = 486
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 39 TSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM---LELV 94
+K + ++ WF++DLR++D+ L A K Q VVPL++FD IL + ++ +E +
Sbjct: 50 NAKQKRKVSIFWFRRDLRLNDNTALYNALKSQNEVVPLFIFDTEILDKLEDKKDARVEFI 109
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
+ +++ LK+ GS L+++ G V+N +ELV E SV+ + E +Q
Sbjct: 110 HLYIMKIQEQLKQVGSTLIVKHGTVDNAFKELVSEFDIQSVYVNRDYESSAKQ 162
>gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera]
Length = 212
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 87/165 (52%), Gaps = 16/165 (9%)
Query: 46 SAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVIFA 97
S +WF+ DLRV D+ L +AS + +++P+Y FD R + S+ +I +
Sbjct: 4 SCXVWFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 63
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ DLR++L+++GSDL++R G+ E V+ EL + V A +++A EV + + ++ +
Sbjct: 64 VSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEAAMK 123
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPL 198
+ +G W + Y + +L +P ++ F++ + L
Sbjct: 124 E----EGVEXKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGL 164
>gi|426404142|ref|YP_007023113.1| deoxyribodipyrimidine photo-lyase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860810|gb|AFY01846.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 435
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLELVIF---ALE 99
S V WF++DLR+DD+ GL A K + AV+PL++FD IL + + V F ++
Sbjct: 2 SKVTVFWFRRDLRLDDNAGLYHALKERSAVLPLFIFDSEILEKLEDPADARVTFIYDQIQ 61
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
D+++ LK + SDL++R G+ V++ L E++ +++A + E
Sbjct: 62 DIKQQLKTKKSDLLVRHGKPLEVLKALSTEMEIEAIYANHDYE 104
>gi|357466479|ref|XP_003603524.1| Cryptochrome DASH [Medicago truncatula]
gi|355492572|gb|AES73775.1| Cryptochrome DASH [Medicago truncatula]
Length = 323
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 89/172 (51%), Gaps = 24/172 (13%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--------R 85
T+ T + G+A++WF+ DLRV D+ L A Q ++P+Y D R+ + +
Sbjct: 86 TSNNTKRSGKGTAIVWFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHFGFPK 145
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE----- 140
+ ++ L+DLRK+L ++G +L+I+ G+ E+++ LV+ A +V+A++E
Sbjct: 146 TGALRTQFLLECLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKETCSEE 205
Query: 141 ------VEYHLRQMMAIVDETLAKVSLVDGKPKI-CLWQTPFYDIKNLNDLP 185
V L+Q++ + + + + PK+ +W T Y + +DLP
Sbjct: 206 LNVERSVNNRLQQVVVPSNGSAGAATTSNSHPKLQFVWGTTMY---HHDDLP 254
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 19/194 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYS-------NEMLELVIFALE 99
+IW++ DLR+ DH L A K A ++P Y FD R S N + ++ ++
Sbjct: 7 LIWYRNDLRIHDHEPLYQAIKQGALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESVT 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DL+KSL++ GS+L+IR G E +I EL+++++ +V+ EEV + V++ L +
Sbjct: 67 DLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEKALKPL 126
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKL--QRPLTSPIL-PPTLAGAKL 212
++ W Y +L + LP FRK + +PIL P +
Sbjct: 127 NVTFK----GFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSLP 182
Query: 213 EADWGPLPTFDELK 226
+ + G +P+ +EL+
Sbjct: 183 DIEVGNVPSLEELE 196
>gi|344211651|ref|YP_004795971.1| photolyase/cryptochrome [Haloarcula hispanica ATCC 33960]
gi|343783006|gb|AEM56983.1| photolyase/cryptochrome [Haloarcula hispanica ATCC 33960]
Length = 456
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 62/116 (53%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR+ D+ GL AA+ V+P+YV D +L+ ++ + L+++ ++
Sbjct: 3 VFWHQRDLRIPDNRGLTAAAADDEVLPVYVIDTDLLASVGKRQRAFLLAGVRALKQAYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
G DL++R G +V+ ++VE+ A V+ E R VD+ L+ SL D
Sbjct: 63 HGGDLLVRKGAAVDVLSDVVEKYNADRVYYNEHYRPARRNRQRRVDDALSTKSLTD 118
>gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1]
Length = 525
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 137/352 (38%), Gaps = 96/352 (27%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLVAASK--YQAVVPLYVFDHRILS--------------R 85
G V+WF+ DLRV D+ L+ A+K + VVP+Y FD R S +
Sbjct: 5 GNPRPVVVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCGQFPK 64
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV---- 141
+I +++DLR L+E GS L++R G E + + +V AT VFA +EV
Sbjct: 65 CGRPRARFLIESVDDLRTRLQELGSGLVVRTGLPEEEVARVAAQVGATQVFAHQEVCSEE 124
Query: 142 ---EYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK----- 193
E+ L++ + + +SL G +C + + LP +FRK
Sbjct: 125 VAAEHRLKRQLEV------PLSLHWGAVTLCHLDDLDFGPR-CKHLPSVFTQFRKRVEAD 177
Query: 194 -LQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETIL 252
RP+ + P LA + + G +PT ++L
Sbjct: 178 MHVRPVVA--APARLAPLPSDLELGSIPTVEDL--------------------------- 208
Query: 253 TDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTV 312
QH P +R F GG A LQ YL E +
Sbjct: 209 --------------CPGQHEPDERAVLPF---------KGGETAARARLQYYL--WESNL 243
Query: 313 RDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERN 364
+++ + L G +++ F P L G ++ R +++E ++E+ER
Sbjct: 244 LASYKDTRNGLV------GGDYSSKFSPWLAHGNLTARWIYHEVKRYEQERT 289
>gi|443324015|ref|ZP_21052973.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
gi|442796190|gb|ELS05502.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
Length = 491
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 138/326 (42%), Gaps = 67/326 (20%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF-------ALE 99
+IW+++DLR+ DH + A + +A ++PLY FD R ++ S + F A+
Sbjct: 7 LIWYRRDLRLHDHKPMYQALQQEAQIIPLYCFDERQFAKTSFGFPKTGAFRSQFLLEAVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR SL + GS+L++R G E +I L +E++ ++V+ EV + A + + L+++
Sbjct: 67 DLRNSLSQLGSNLIVRRGLPEKIIPSLAKELEISAVYFHGEVTSEELAVEAALQKALSQI 126
Query: 160 SLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEA--DWG 217
+ + W Y + +DLP S + +L + + + +
Sbjct: 127 KISVKR----FWGNTLY---HPDDLPFSIEQIPELFTNFRKSVEKKSSVASSFAVPQELP 179
Query: 218 PLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRL 277
PLP + + E P +LS LG + + R L
Sbjct: 180 PLPDIN-----LGELP---------------------QLSDLGLEAPK-----FDSRAVL 208
Query: 278 DKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATL 337
D GG A L L +Y+ G D++ K RN GA +++
Sbjct: 209 D-----------FKGGETAALARLDSYI--WSGDYLKDYK----KTRNGML--GADYSSK 249
Query: 338 FGPALCLGIISRRGVHYEAIKFEKER 363
F P L LG +S R ++ + ++E +R
Sbjct: 250 FSPWLALGCLSPRLIYEQVQEYEAQR 275
>gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
Length = 428
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 23/149 (15%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKS 104
+ WF++DLR+DD++GL A + Q ++P+++FD+ ILS+ S + + L ++K
Sbjct: 3 IFWFRRDLRLDDNVGLFHALNSDQTILPIFIFDYNILSQLSKDDARVTFIHELLSKMQKK 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR---------------QMM 149
L+E+G L + +G+ + +L+ E K +++ + E + R Q +
Sbjct: 63 LQEKGKSLAVFYGKPSEIFEKLISENKVKTIYTNHDYEPYARKRDKELNQLFANHNIQFL 122
Query: 150 AIVDETL---AKVSLVDGKPKICLWQTPF 175
D+ + ++V+ DGKP I TP+
Sbjct: 123 TSKDQVIFEKSEVTKDDGKPYIVY--TPY 149
>gi|356535153|ref|XP_003536113.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 440
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 16/155 (10%)
Query: 50 WFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLR+ D+ L AA+ +V+P+Y FD + ++ +I ++ DL
Sbjct: 106 WFRNDLRLLDNECLTAANNDSLSVLPVYCFDPSDYGKSASGFDKTGPYRAAFLIDSVSDL 165
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
R+SL+ +GSDL++R G+ E V+ EL + V A +V+A EV + + V+ + K
Sbjct: 166 RRSLQARGSDLVVRVGKPETVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAAM-KEEN 224
Query: 162 VDGKPKICLWQTPFYDIKN----LNDLPVSHNEFR 192
V+ K W + Y + + L D+P ++ FR
Sbjct: 225 VEVK---YFWGSTLYHVDDLPFQLEDMPSNYGGFR 256
>gi|359457825|ref|ZP_09246388.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 484
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 130/336 (38%), Gaps = 87/336 (25%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS-------RYSNEMLELVIFALE 99
+IWF+ DLR+ DH L A + A V+P Y FD R + + ++ ++
Sbjct: 4 LIWFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGLTPFGFPKTGPFRAQFLLESVA 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR+SL+ + SDL++R G E V+ EL + + V+ EV I ET +
Sbjct: 64 DLRQSLRGKQSDLILRQGYPETVVPELAQALNVEVVYFNREVTAE-----EINVETRLRT 118
Query: 160 SLVD-GKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILP---PTLAGAK 211
+L D G + W + + + L +LP +FRK P P P A
Sbjct: 119 ALADLGIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPAPQSLSAL 178
Query: 212 LEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQH 271
+ D G LP E W L + KL R+ +
Sbjct: 179 PDIDPGELPQL---------------EDWGLSS------------PKLDPRAMMQFS--- 208
Query: 272 SPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRN-AESRD 330
GG A L LQ Y+ W+ Q+ L+ E+R+
Sbjct: 209 --------------------GGETAALARLQDYI----------WE--QDCLKQYKETRN 236
Query: 331 G---ASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
G + +T F P LG +S R +H + +E+ER
Sbjct: 237 GMLQPNNSTKFSPWFALGCVSPRYIHQQVKAYEQER 272
>gi|409991103|ref|ZP_11274395.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
gi|409938041|gb|EKN79413.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
Length = 490
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 21/194 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLE-------LVIFALE 99
++W++ DLR+ DH L A+ Q ++PLY FD R ++ S + ++ ++
Sbjct: 9 ILWYRNDLRLHDHEPLDLATSTQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGKFLLESVA 68
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR + ++ GS+L++R G E VI +LV+++ +V+ +EV + +A V+ L K
Sbjct: 69 DLRHNFQKIGSNLLVRIGEPERVIFDLVKQLNIDAVYYHKEVT---AEELA-VETALEKA 124
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKL--- 212
G W Y +K L LP FRK Q S I PP +L
Sbjct: 125 LTPLGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRK-QVEQKSVIYPPYTPPNQLPQF 183
Query: 213 -EADWGPLPTFDEL 225
+ + G +PT EL
Sbjct: 184 PDIEPGEIPTLTEL 197
>gi|425437395|ref|ZP_18817812.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
gi|389677621|emb|CCH93442.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
Length = 485
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+LR+SL+ GS+L+IR G+ E +I +LV+E++ V+ +EV + +A+
Sbjct: 63 ANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVT---AEELAVEKAVNKA 119
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK-LQR--PLTSPILPPTLAGAK 211
+S++ + K W Y + LN LP FRK ++R + + P
Sbjct: 120 LSIIPVQIK-TFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKL 178
Query: 212 LEADWGPLPTFDEL 225
+ DWG LP +L
Sbjct: 179 PKIDWGNLPILKDL 192
>gi|434388808|ref|YP_007099419.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
gi|428019798|gb|AFY95892.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
Length = 503
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEM-------LELVIFALE 99
+IW++ DLR+ DH L A K A ++P Y FD R + S + ++ ++
Sbjct: 7 LIWYRNDLRLHDHQPLTQALKDGASIIPFYCFDDRQFGQTSFGFPKTGGFRAQFLLESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
D + S + GS+L+IR G E +I +LVE + T V+ +EV + ++ L V
Sbjct: 67 DFQHSYRSLGSELIIRRGLTEEIIPQLVEPLGITDVYYHQEVTPEEIAVSTALEAALKAV 126
Query: 160 SL----VDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-LQRPLTSPIL---PPTLAGAK 211
++ G L PF L ++P FRK ++R +P P +L
Sbjct: 127 NVNCRSFWGHTLHLLQDLPF----TLPNVPELFTNFRKEVERKAPTPTCLPAPTSLPPLS 182
Query: 212 LEADWGPLPTFDELK 226
+ D G LPT ++L+
Sbjct: 183 VNIDPGTLPTIEDLR 197
>gi|440756671|ref|ZP_20935871.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
gi|440172700|gb|ELP52184.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
Length = 485
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+LR+SL+ GS+L+IR G+ E +I +LV+E++ V+ +EV + +A+
Sbjct: 63 ANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVT---AEELAVEKAVNKA 119
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK-LQR--PLTSPILPPTLAGAK 211
+S++ + K W Y + LN LP FRK ++R + + P
Sbjct: 120 LSIIPVQIK-TFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKL 178
Query: 212 LEADWGPLPTFDEL 225
+ DWG LP +L
Sbjct: 179 PKIDWGNLPILKDL 192
>gi|425453111|ref|ZP_18832925.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|425461683|ref|ZP_18841157.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
gi|389764695|emb|CCI09167.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|389825403|emb|CCI24828.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
Length = 485
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+LR+SL+ GS+L+IR G+ E +I +LV+E++ V+ +EV + +A+
Sbjct: 63 ANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVT---AEELAVEKAVNKA 119
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK-LQR--PLTSPILPPTLAGAK 211
+S++ + K W Y + LN LP FRK ++R + + P
Sbjct: 120 LSIIPVQIK-TFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKL 178
Query: 212 LEADWGPLPTFDEL 225
+ DWG LP +L
Sbjct: 179 PKIDWGNLPILKDL 192
>gi|92429532|gb|ABD93510.2| DNA photolyase protein [Capsicum annuum]
Length = 188
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 16/155 (10%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDLR 102
F+ DLRV D+ L AA ++ +V+P+Y FD R + S+ +I +++DLR
Sbjct: 1 FRNDLRVHDNECLXAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVKDLR 60
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
K+L+ +GSDL++R G+ E V+ EL + V A +V+A EV Y + +D + L
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIDAVMKDEGL- 119
Query: 163 DGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
D K W + Y + + L ++P ++ FR+
Sbjct: 120 DVK---FFWGSTLYHLDDLPFKLEEMPTNYGGFRE 151
>gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii]
gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii]
Length = 443
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 26/170 (15%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEML----------- 91
+A++WF+ DLR+ D+ L A + + V+P+YVFD R + YS +L
Sbjct: 43 AALVWFRNDLRLHDNPALEQACRQSSSVLPVYVFDPRDYGKAGYSVCLLPQTPSGFDRTG 102
Query: 92 ----ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
++ A+ DLR+ L++ GSDL++R GR E V++EL V A +V+ + EV Q
Sbjct: 103 PGRARFLLEAVADLRQRLRDAGSDLVVRLGRPEAVLKELAAAVGAGAVYCQSEVTAEEMQ 162
Query: 148 MMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ V L + S + +P+ W + +++ L+ +P S+ +FR+
Sbjct: 163 VEGRVRAALDRES-CELRPQ---WGGTLFHLEDLPFRLDAMPTSYADFRE 208
>gi|92429536|gb|ABD93512.2| DNA photolyase protein [Coffea canephora]
Length = 189
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 16/156 (10%)
Query: 50 WFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEMLEL----VIFALE---DL 101
WF+ DLRV D+ L +A+ + +V+P+Y FD R + S+ + F LE DL
Sbjct: 1 WFRNDLRVHDNECLNSANNESMSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLESVADL 60
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
RK+L+ +GSDL++R G+ E V+ EL + V A +V+A EV + + ++ L +
Sbjct: 61 RKTLQAKGSDLVVRIGKPETVLVELAQAVGAEAVYAHREVSHDEVKAEDNIEAVLKE--- 117
Query: 162 VDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+G W + Y I + L ++P ++ F++
Sbjct: 118 -EGVEVKYFWGSTLYHIDDLPFKLTEMPTNYGGFKE 152
>gi|449492091|ref|XP_004176864.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Taeniopygia
guttata]
Length = 488
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 144/337 (42%), Gaps = 69/337 (20%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRI--------LSRYSNEMLE 92
G +G+A+ + DLR D+ L A V+PLY FD R L + L
Sbjct: 3 GTAGTAICLLRCDLRAHDNQVLHWAQHNADFVIPLYCFDPRHYLGTHCYRLPKTGPHRLR 62
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS--VFAEEEVEYHLRQMMA 150
++ +++DLR++LK++GS L++R G+ E+V+ +L+ ++ + + VF EE + L
Sbjct: 63 FLLESVKDLRETLKKKGSTLVVRKGKPEDVVCDLITQLGSVTAVVFHEEATQEELD---- 118
Query: 151 IVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQR-PLTSPILPPTL-A 208
V++ L +V G W + Y + +DLP FR + R P L +
Sbjct: 119 -VEKGLCQVCRQHGVKIQTFWGSTLY---HRDDLP-----FRPIDRLPDVYTHFEKGLES 169
Query: 209 GAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN 268
GAK+ L D+LK L + +I T + G++ +
Sbjct: 170 GAKVRPT---LRMADQLK--------------PLAPGLEEGSIPT--MEDFGQKDPVD-- 208
Query: 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAES 328
PR S GG L LQ Y + + + ++E + L
Sbjct: 209 ---DPRTAFPCS-----------GGETQALMRLQYY--FWDTNLVASYKETRNGLV---- 248
Query: 329 RDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
G ++T F P L LG IS R ++ + K+E+ER A
Sbjct: 249 --GMDYSTKFAPWLALGCISPRYIYEQIQKYERERTA 283
>gi|425466604|ref|ZP_18845902.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
gi|389830841|emb|CCI26891.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
Length = 485
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR+SL+ G +L+IR G+ E++I +LV+E++ V+ +EV + V++ L+
Sbjct: 63 ADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSG 122
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
V + W Y + LN LP FRK
Sbjct: 123 VPVQIK----TFWTATLYHPDDLPFTLNQLPELFTNFRK 157
>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
Length = 485
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR+SL+ G +L+IR G+ E++I +LV+E++ V+ +EV + V++ L+
Sbjct: 63 ADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSG 122
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
V + W Y + LN LP FRK
Sbjct: 123 VPVQIK----TFWTATLYHPDDLPFTLNQLPELFTNFRK 157
>gi|443661557|ref|ZP_21132734.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332297|gb|ELS46914.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
Length = 485
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+L++SL+ G +L+IR G+ E +I +LV+E++ V+ +EV + V++ L+
Sbjct: 63 ANLQQSLEGLGGNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSG 122
Query: 159 VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-LQR--PLTSPILPPTLAGAK 211
V + W Y +L N LP FRK ++R + + P
Sbjct: 123 VPVQIK----TFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHWEIRTTYASPKKLTKL 178
Query: 212 LEADWGPLPTFDEL 225
+ DWG LP+ ++L
Sbjct: 179 PKIDWGNLPSLNDL 192
>gi|425438643|ref|ZP_18818987.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
gi|389719600|emb|CCH96584.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
Length = 485
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR+SL+ G +L+IR G+ E++I +LV+E++ V+ +EV + V++ L+
Sbjct: 63 ADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSG 122
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
V + W Y + LN LP FRK
Sbjct: 123 VPVQIK----TFWTATLYHPDDLPFTLNQLPELFTNFRK 157
>gi|338210188|ref|YP_004654235.1| DASH family cryptochrome [Runella slithyformis DSM 19594]
gi|336304001|gb|AEI47103.1| cryptochrome, DASH family [Runella slithyformis DSM 19594]
Length = 479
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 139/337 (41%), Gaps = 82/337 (24%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEML--------ELVIFAL 98
+ WF+ DLR+ D+ G + A V+P+YVFD R + + + ++ ++
Sbjct: 6 IYWFRNDLRLHDNEGFLKAIQDADEVIPIYVFDTRQFEEIGSLGIPKTGTFRAKFLLESV 65
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
++LR +L+++G++L+I+ G+ E VI EL E T+++ +E Q V+ +L+K
Sbjct: 66 QNLRDNLRKKGANLVIKLGKPEIVISELAREWDVTAIYTAKEAT----QEETDVETSLSK 121
Query: 159 VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKL--QRPLTSPILPPTLAGAKL 212
V W Y ++L + LP +FRK+ + + P +A
Sbjct: 122 KLKVYNIDFEVFWGATLYHPRDLPFWVSRLPDVFTDFRKVVEGKSVIRPAFQEPIALRLP 181
Query: 213 EA-DWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQH 271
E ++G +P EL IL +L ++ +R+
Sbjct: 182 EGLEFGKMPEIYEL-------------------------ILFSQLPEVDRRAA------- 209
Query: 272 SPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRD- 330
FV GG L L AYL W+ K E+R+
Sbjct: 210 ----------FV------FKGGETEALQRLNAYL----------WETDHIKFYK-ETRNG 242
Query: 331 --GASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
GA++++ F P L G +S R ++ E K+E + A
Sbjct: 243 LLGANYSSKFSPWLAYGCVSPRQIYEEVKKYEAQHGA 279
>gi|428217984|ref|YP_007102449.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
gi|427989766|gb|AFY70021.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
Length = 500
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 73/337 (21%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAV-VPLYVFDHRILSRYSNEMLELVIF-------ALE 99
+IW++ DLR+ DH L +K A+ +P+Y FD R + + F ++
Sbjct: 7 IIWYRNDLRIHDHEPLWTVAKAGAIAIPIYCFDPRQFATTKYGFAKTGAFRAQFLTESVL 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEV--KATSVFAEEEVEYHLRQMMAIVDETLA 157
DLR L++ GSDL++R+G E ++ EL +++ A +++ +EV ++ A + + LA
Sbjct: 67 DLRDRLRQLGSDLIVRYGEPEQILPELAQKLNANANAIYYHQEVTSEETKVEAAIAQDLA 126
Query: 158 KVSLVDGKPKI-CLWQTPFYDIKNL----NDLPVSHNEFRKL--QRPLTSPILPPTLAGA 210
+ K+ W Y +L +P +FRK Q +P L
Sbjct: 127 ATDI-----KLQAFWGHTLYHRDDLPFSMERIPAIFTKFRKQVEQEATINPAL------- 174
Query: 211 KLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSA--ETILTDKLSKLGKRSKRNLN 268
P+PT EL F + N +N + A + L++LG
Sbjct: 175 -------PMPT--ELISFNDLND---------LNEIDAPLDPGEIPSLAQLGLEPI---- 212
Query: 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAES 328
+P R +F GG A + L Y ++D ++ RN
Sbjct: 213 ---APDDRAAITF---------TGGEGAAIARLDQYF------WQNDCLRTYKQTRNGML 254
Query: 329 RDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
GA +++ F P L G IS R + + K+E++R A
Sbjct: 255 --GADYSSKFSPWLAHGCISPRYIFEQVQKYEQDRVA 289
>gi|92429530|gb|ABD93509.2| DNA photolyase protein [Nicotiana tomentosiformis]
Length = 170
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDLR 102
F+ DLRV D+ L AA ++ +V+P+Y FD R + S+ +I ++ DLR
Sbjct: 1 FRNDLRVHDNESLNAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLR 60
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
K+L+ +GSDL++R G+ E V+ EL + V A +V+A EV Y + ++ + V
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKG----EDKIESVMKD 116
Query: 163 DGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+G W + Y + + L ++P ++ FR+
Sbjct: 117 EGVEVKYFWGSTLYHVDDLPFKLEEMPTNYGGFRE 151
>gi|390440296|ref|ZP_10228639.1| Cryptochrome DASH [Microcystis sp. T1-4]
gi|389836306|emb|CCI32765.1| Cryptochrome DASH [Microcystis sp. T1-4]
Length = 485
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR+SL+ G +L+IR G+ E +I +LV+E++ V+ +EV + V++ L+
Sbjct: 63 ADLRQSLESLGGNLIIRRGKPEELIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSG 122
Query: 159 VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-LQRPLTSPILPPTLAG-AKL 212
+ W Y +L + LP FRK ++R PT KL
Sbjct: 123 FPVQIK----TFWTATLYHPDDLPFTIHQLPELFTNFRKQVERHWEIRTTYPTPKKLTKL 178
Query: 213 -EADWGPLPTFDEL 225
+ DWG LP ++L
Sbjct: 179 PKIDWGNLPILNDL 192
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 24/202 (11%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF-------ALE 99
++W++ DLR+ DH L A + +A V+P Y FD R+ S + F ++
Sbjct: 7 LLWYRNDLRLHDHEPLHQALQTKAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR++++ +GS+L++R G ENVI L +E+ T+V+ +EV + + + L+++
Sbjct: 67 DLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQEVTSEEVAVESALKNALSEI 126
Query: 160 SLVDGKPKICLWQTPFYDIK----NLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEA- 214
+ W + Y NL +P FRK Q S I PP +L +
Sbjct: 127 GIT----VQTFWGSTLYHPDDLPFNLLKIPELFTNFRK-QVEKKSTIYPPFPTPKRLPSL 181
Query: 215 ---DWGPLPTFDELKEFVNENP 233
+ G LP +L +F E+P
Sbjct: 182 PSVEVGELP---QLADFGLESP 200
>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 488
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEM-------LELVIFA 97
+ ++WF+ DLR+ DH L A + + ++PLY D R R + + ++ +
Sbjct: 2 AVLLWFRTDLRLLDHQPLTRACQQGSFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLLES 61
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L DLR+ L+ +GSDL+IR G+ E VI L E +V+A EEV + + + L
Sbjct: 62 LADLRQQLRARGSDLVIRQGQPEQVIPALAREWGVKAVYAHEEVGTEEEAVARALQQALQ 121
Query: 158 KVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ G P W Y + L DLP FR+
Sbjct: 122 PL----GIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQ 157
>gi|424841446|ref|ZP_18266071.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
gi|395319644|gb|EJF52565.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
Length = 460
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 128/342 (37%), Gaps = 87/342 (25%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--------SRYSNEMLEL 93
++ + WF+ DLR+ D+ L A K + V P+YVFD R ++ +
Sbjct: 7 KAKRVIAWFRLDLRLHDNEMLTEAIKASEEVYPVYVFDERTFGGKTESGFAKTGPRRCQF 66
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
+I A+ DL++ L+ G DL+IR G+ E + EL +E+K VF E Y ++
Sbjct: 67 IIEAVADLKQQLQTLGIDLIIRRGKAEEELFELAQELKTGWVFCNRERTYEEELQQNRLE 126
Query: 154 ETL----AKVSLVDGKPKICLWQTPFYDIKNLNDLPVSH-----NEFRKLQRPLTSPILP 204
E L ++ GK PF P++H +FRK LT PI
Sbjct: 127 EKLWSIGQEIRFFRGKMLYYTQDLPF---------PIAHTPDIFTQFRKEVEKLT-PIRA 176
Query: 205 PTLAGAKLEADWG---PLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGK 261
P L + W PL +L +F E P
Sbjct: 177 P-LPKPQAFPPWSHRLPLGDLPQLSDFGWEMP---------------------------- 207
Query: 262 RSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQE 321
PR L GG L LQ YL E ++E +
Sbjct: 208 --------PQDPRTVLQ-----------FKGGETEGLKRLQYYL--WESDCIASYKETRN 246
Query: 322 KLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
L GA +++ F P L G +S + ++ E ++EKER
Sbjct: 247 GLL------GADYSSKFSPWLAQGCLSPKQIYAEIKRYEKER 282
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLR---K 103
+ WF++DLR+DD+ L+AA + VVP+++FD ILSR + V F LE LR +
Sbjct: 6 LCWFRRDLRLDDNTALLAAYAAAEEVVPVFIFDDAILSRPDTGAVR-VAFLLESLRNLDE 64
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+ +GS L++R GR E+V+ +LV E A++V+ +VE
Sbjct: 65 NLRARGSRLLLRRGRPEHVLAQLVTETAASAVYFNRDVE 103
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDLRK 103
+ + WF+QDLR+ D GL AA++ AV+P+++ D + + +S + ++L+ L+
Sbjct: 4 TTIFWFRQDLRLTDLPGLCAAAERGAVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSLQA 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
S++ +G +L++R G E+V+ L+EE A++V++ + + + + ETL
Sbjct: 64 SIEARGGELILRRGAPEDVLTALIEESGASAVYSSRQYQPWATSLETTLHETL 116
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY--SNEMLELVIFALE 99
R +A++W ++DLR+DDH A K+ +AV+P++VFD IL+ + ++ + +
Sbjct: 4 RYRTALVWLRRDLRLDDHAAFYHALKHSEAVLPVFVFDASILAALPRDDRRVDFIWQSAA 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK- 158
L+ L + G DL+IR G ++ I L E+ A +VF + E R A V + LA+
Sbjct: 64 ALKAELNQLGGDLLIRHGLPQHEIPRLAAELGAEAVFCNRDYEPAARARDAEVAQRLAEQ 123
Query: 159 -VSLVDGKPKICL 170
V+ D K ++
Sbjct: 124 GVAFRDSKDQVIF 136
>gi|55377570|ref|YP_135420.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049]
gi|55230295|gb|AAV45714.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049]
Length = 464
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR+ D+ GL AA+ V+P+YV D +L+ ++ + L+++ ++
Sbjct: 11 VFWHQRDLRIPDNRGLTAAAADDEVLPVYVLDTDLLANIGKRQKAFLLAGVRALKQAYRD 70
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
G +L+++ G +V+ +V+E A V+ E R VDE L SL D
Sbjct: 71 HGGELLVKKGTAVDVLSNVVDEYDADRVYYNEHYRPARRNRQRRVDEALPTKSLTD 126
>gi|448639942|ref|ZP_21677090.1| photolyase/cryptochrome [Haloarcula sinaiiensis ATCC 33800]
gi|445762469|gb|EMA13690.1| photolyase/cryptochrome [Haloarcula sinaiiensis ATCC 33800]
Length = 456
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR+ D+ GL AA+ V+P+YV D +L+ ++ + L+++ ++
Sbjct: 3 VFWHQRDLRIPDNRGLTAAAADDEVLPVYVLDTDLLANIGKRQKAFLLAGVRALKQAYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
G +L+++ G +V+ +V+E A V+ E R VDE L SL D
Sbjct: 63 HGGELLVKKGTAVDVLSNVVDEYDADRVYYNEHYRPARRNRQRRVDEALPTKSLTD 118
>gi|448659437|ref|ZP_21683292.1| photolyase/cryptochrome [Haloarcula californiae ATCC 33799]
gi|445760378|gb|EMA11641.1| photolyase/cryptochrome [Haloarcula californiae ATCC 33799]
Length = 456
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR+ D+ GL AA+ V+P+YV D +L+ ++ + L+++ ++
Sbjct: 3 VFWHQRDLRIPDNRGLTAAAADDEVLPVYVLDTDLLANIGKRQKAFLLAGVRALKQAYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
G +L+++ G +V+ +V+E A V+ E R VDE L SL D
Sbjct: 63 HGGELLVKKGTAVDVLSNVVDEYDADRVYYNEHYRPARRNRQRRVDEALPTKSLTD 118
>gi|92429526|gb|ABD93507.2| DNA photolyase protein [Solanum melongena]
Length = 187
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 16/155 (10%)
Query: 51 FKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDLR 102
F+ DLRV D+ L AA+ + +V+P+Y FD R + S+ +I ++ DLR
Sbjct: 1 FRNDLRVHDNECLNAANNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVADLR 60
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
K+L+ +GSDL++R G+ E V+ EL + V A +V+A EV + + +D +
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKD---- 116
Query: 163 DGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+G W + Y I + L ++P ++ FR+
Sbjct: 117 EGLEVKYFWGSTLYHIDDLPFKLEEMPTNYGGFRE 151
>gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum]
Length = 189
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 16/156 (10%)
Query: 50 WFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLRV D+ L AA ++ +V+ +Y FD R + S+ +I ++ DL
Sbjct: 1 WFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADL 60
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
RK+L+ +GSDL++R G+ E V+ EL + V A +V+A EV + + +D +
Sbjct: 61 RKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKD--- 117
Query: 162 VDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+G W + Y + + L +P ++ FR+
Sbjct: 118 -EGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFRE 152
>gi|381186840|ref|ZP_09894408.1| cryptochrome [Flavobacterium frigoris PS1]
gi|379651146|gb|EIA09713.1| cryptochrome [Flavobacterium frigoris PS1]
Length = 429
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 143/351 (40%), Gaps = 108/351 (30%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFD--HRILSRYSNEML-----ELVIFA 97
+A++WFK DLR+ D+ L+ A ++ + ++P+Y FD H ++Y + + ++ +
Sbjct: 3 TAIVWFKTDLRLYDNETLIKAIAQSEEILPIYCFDDSHFETTQYGFKKTGSYRAQFLLES 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L++L +L++ GS L+I G+ E I ++V E K VFAE EV + ++ +V L
Sbjct: 63 LKNLDANLRKLGSGLLIVKGKPEVEIPKIVAEYKVHKVFAEREVAFEEKRTEKLVQTELF 122
Query: 158 KVSLVDGKPKICLWQT----PFYDIKNL----NDLPVSHNEFRK-----------LQRPL 198
K+ C +T Y ++L D+P FRK PL
Sbjct: 123 KLR--------CELETFSTSTLYHAEDLPFAKKDIPDIFTVFRKKIEQETSVRSVFSSPL 174
Query: 199 T--SPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKL 256
T SPI+P KL LPT +L LE L
Sbjct: 175 TIASPIIP------KLN-----LPTLKKL---------GLE------------------L 196
Query: 257 SKLGKRSKRNL-NNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDD 315
SK+ R+ N + +KRL+ FF T +L +Y G V
Sbjct: 197 SKIDSRAAINFKGGETQAKKRLNHYFFET--------------KSLSSYKETRNGMV--- 239
Query: 316 WQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNAG 366
G +++ F L LG IS R +++E ++E + A
Sbjct: 240 ---------------GEDYSSKFSAWLALGCISPRAIYFEIKRYENQNGAN 275
>gi|356500345|ref|XP_003518993.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 428
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 16/155 (10%)
Query: 50 WFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLR+ D+ L AA+ +V+P+Y FD + ++ +I ++ DL
Sbjct: 94 WFRNDLRLLDNECLTAANNESLSVLPVYCFDPADYGKSASGFDKTGPYRAAFLIDSVSDL 153
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
R++L+ +GSDL++R G+ E V+ EL + V A +V+A EV + + V+ + K
Sbjct: 154 RRNLQARGSDLVVRVGKPEAVLVELAKAVGADAVYAHREVSHDEAKAEERVEAAM-KEEN 212
Query: 162 VDGKPKICLWQTPFYDIKN----LNDLPVSHNEFR 192
V+ K W + Y + + L D+P ++ FR
Sbjct: 213 VEVK---YFWGSTLYHVDDLPFQLEDMPSNYGGFR 244
>gi|347541255|ref|YP_004848681.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
gi|345644434|dbj|BAK78267.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
Length = 469
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY--SNEMLELVIFALED 100
+ +A+ WF++DLR+DDH L AA ++ + V+ ++VFD IL + ++ + +L +
Sbjct: 2 TTTALCWFRRDLRLDDHAALHAALRHSERVICVFVFDRDILDHLPAQDHRVDFIWHSLME 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
L++ L+ GSDL++ GR + I L +E A++V+A + E Q A V E L++
Sbjct: 62 LKEHLRALGSDLVVASGRPVDCIPALAQEHGASTVWASRDYEPAACQRDAAVAERLSR 119
>gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum]
Length = 189
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 16/156 (10%)
Query: 50 WFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLRV D+ L AA ++ +V+ +Y FD R + S+ +I ++ DL
Sbjct: 1 WFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADL 60
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
RK+L+ +GSDL++R G+ E V+ EL + V A +V+A EV + + +D +
Sbjct: 61 RKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKD--- 117
Query: 162 VDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+G W + Y + + L +P ++ FR+
Sbjct: 118 -EGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFRE 152
>gi|411119570|ref|ZP_11391950.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
gi|410711433|gb|EKQ68940.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
Length = 496
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 137/334 (41%), Gaps = 78/334 (23%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRYSNEM-------LELVIF 96
S +IW++ DLRV DH L A + A ++P+Y D R + S + ++
Sbjct: 5 SILIWYRNDLRVADHEPLYQALRINASHILPVYCIDPRQFGQTSFGFPKTGAFRAQFLLE 64
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+L DLR+SL++ GS+L+IR G E VI EL+++ ++V +EV IV++ L
Sbjct: 65 SLADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYHKEVTSE----EVIVEDAL 120
Query: 157 AKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-LQRPLT--SPILPPTLAG 209
+ G W Y L +++P FRK +++ +T S + P
Sbjct: 121 ERALKPMGVELRSFWGHTLYHPAELPFDISEIPELFTSFRKQVEKSVTVNSTLPAPKRLP 180
Query: 210 AKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNN 269
A + G +P +L EF + P N + +L + +
Sbjct: 181 ALPAIEPGEMP---QLAEFNLKAP-----------NFDSRAVL------------KFVGG 214
Query: 270 QHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESR 329
+ + RLD F+ D L+ Y G +
Sbjct: 215 ETAGHNRLDYYFWQQD--------------CLKVYKETRNGML----------------- 243
Query: 330 DGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
GA +++ F P L LG +S R ++ + ++E++R
Sbjct: 244 -GADYSSKFSPWLALGCLSPRTIYEQVQQYEEQR 276
>gi|428776804|ref|YP_007168591.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
gi|428691083|gb|AFZ44377.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
Length = 483
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 29/189 (15%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF-------ALE 99
+IW++ DLRV DH L ASK Q ++P Y FD R + F ++
Sbjct: 7 LIWYRNDLRVHDHEPLFRASKTQGQIIPFYCFDTREFGHTGFGFPKTGSFRAQFLQESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS-VFAEEEVEYHLRQMMAIVDETLAK 158
+LR++LK GS+LMIR G+ E +I ELV + T+ V+ E +R V++ L+K
Sbjct: 67 NLRETLKNLGSNLMIRVGQPEIIIPELVTALNLTNLVYHAEVTAEEIR-----VEKALSK 121
Query: 159 VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-----------LQRPLTSPIL 203
G W + + + +L +DLP ++RK P P L
Sbjct: 122 QLQSLGVTLTSYWGSTLHHLDDLPIKVDDLPDVFTQYRKRIEKTSEIRSCFPTPEKLPPL 181
Query: 204 PPTLAGAKL 212
P +A L
Sbjct: 182 PSEIATGDL 190
>gi|297727181|ref|NP_001175954.1| Os09g0532800 [Oryza sativa Japonica Group]
gi|255679084|dbj|BAH94682.1| Os09g0532800, partial [Oryza sativa Japonica Group]
Length = 519
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 119 VENVIRELVEEVKATSVFA--EEEVEYHLRQMMAIVDETLAKVSLVDGKP-KICLWQTPF 175
VE V+ ++++ +K S +EEVEY +R ++A V+ +L+ S + G P +I +W
Sbjct: 390 VEVVLLQVMKGIKHRSNINSRKEEVEYRVRNVLASVESSLSNASYLSGNPPEIVVWSASL 449
Query: 176 YDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWG 217
YD KN +L SHN+F K + P+ +P+ P+L +E + G
Sbjct: 450 YDYKNPRELSTSHNQFLKEKLPMNTPLAAPSLPALNIEIETG 491
>gi|409123337|ref|ZP_11222732.1| deoxyribodipyrimidine photolyase [Gillisia sp. CBA3202]
Length = 432
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++ WF++DLR+DD++GL+ A K V+P+++FD IL ++ L + L+++RK
Sbjct: 6 SIFWFRRDLRLDDNVGLLEALKGDFPVLPIFIFDSEILDDLPKNDARLSFIFDTLQNIRK 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L+ GS L + FG+ + ++L ++ +F + E + +Q DE + K++
Sbjct: 66 ELQSSGSSLAMFFGKPAAIFKDLFDQYDVQKIFTNRDYEPYAKQR----DEKIEKLA 118
>gi|159471433|ref|XP_001693861.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283364|gb|EDP09115.1| predicted protein [Chlamydomonas reinhardtii]
Length = 742
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 36 AAATSKGRSGSAVIWFKQDLRVDDHLGLVAASK--------------YQAVVPLYVFDHR 81
A+A + +G ++WF+ DLR+DDH GL AA+ +A++PLYV D +
Sbjct: 12 ASALAHSAAGPVLVWFRNDLRLDDHPGLTAAAAACRTGSGSGSGSGSGRALLPLYVLDPQ 71
Query: 82 ILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRE--------LVEEVK 131
LS Y E + AL+ LR L+ GSDL++R G E + E
Sbjct: 72 RLSHLAYMPGGPEALSSALQRLRSELRALGSDLVVRLGAWEQQLPEAAAAAASGGGGGGG 131
Query: 132 ATSVFAEEEVEYHLRQMMAIVDETLAKVS--LVDGKPKICLWQTPFYDIKNLND 183
A +V E+EVE RQ L + G P W P + + ++
Sbjct: 132 AAAVVTEDEVEVRYRQPAQRALAALGQQGGPAQAGGPVAFSWTAPLWPAERFDN 185
>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
Length = 435
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLELVIFALE--- 99
S + WF++DLR+DD+ GL A K + AV+PL++FD IL + V F E
Sbjct: 2 SKVTLFWFRRDLRLDDNAGLYHALKERSAVLPLFIFDSEILENLDDPADARVTFIYEQIQ 61
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
D+++ L + SDL++R G+ V++ L +E+ +++A + E
Sbjct: 62 DMKQQLNAKKSDLIVRHGKPLEVLKTLSDEMAVEAIYANHDYE 104
>gi|255038083|ref|YP_003088704.1| deoxyribodipyrimidine photo-lyase, partial [Dyadobacter fermentans
DSM 18053]
gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
Length = 396
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 19/201 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS-------RYSNEMLELVIFALE 99
+ WF+ DLR+ D+ L AA ++P+YVFD R R +I ++
Sbjct: 6 IYWFRNDLRLKDNQALSAAVGSADEIIPVYVFDPRQFEKTKLGFRRTGALRARFLIESVA 65
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LR++++++G DL+IR G E ++ +L E+ A V+ +E+ ++ + + + L K
Sbjct: 66 ELRENIRQKGGDLIIRTGAPEAIVAQLAEDYNADYVYTSKEIAPQETRIESSLSKNL-KT 124
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEF-RKLQRPLTSPILPPTLAGAKLEA 214
+ VD K W + +L + LP EF R L L PT A L A
Sbjct: 125 ANVDIK---LFWMDTMINATDLPFPVSKLPSGFAEFERLLSNDLKIKDQFPTPASITLPA 181
Query: 215 D--WGPLPTFDELKEFVNENP 233
D G +P EL NE P
Sbjct: 182 DVEAGAIPGLPELGIDPNEIP 202
>gi|325284597|ref|YP_004264060.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP]
gi|324316086|gb|ADY27200.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP]
Length = 757
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
AV+WFK+DLRV DH L A++ V+PLY+++ L ++ L + L DL
Sbjct: 5 AVVWFKKDLRVSDHAALSRAAERGPVLPLYIYEPEQLGHEEFAGHHLTYLNECLHDLSAR 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L G+ L+IR+G V+ L EV S++A +E
Sbjct: 65 LARLGAPLVIRYGEAVEVLEALSREVTVGSLWAHQET 101
>gi|425471952|ref|ZP_18850803.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
gi|389882102|emb|CCI37425.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
Length = 485
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
+IW++ DLRV DH + A + Q ++P Y FD R S + ++ ++
Sbjct: 3 VLIWYRNDLRVHDHEAIHRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESV 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR+SL+ G +L+IR G+ E +I +LV+E++ V+ +EV + V++ L+
Sbjct: 63 ADLRQSLENLGGNLIIRRGKPEELIPQLVQELQIAKVYYHQEVTAEELAVEKAVNQALSG 122
Query: 159 VSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK-LQRPLTSPILPPTLAG-AKL 212
+ W Y + LN LP FRK ++R PT KL
Sbjct: 123 FPVQIK----TFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPTPKKLTKL 178
Query: 213 -EADWGPLPTFDEL 225
+ D+G LP+ ++L
Sbjct: 179 PKIDFGNLPSLNDL 192
>gi|448666718|ref|ZP_21685363.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
gi|445771849|gb|EMA22905.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
Length = 465
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 24/212 (11%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP++VFD +L + ++ AL+ LR+ +++G
Sbjct: 5 WHRRDLRATDNAGLAAATPSDPVVPVFVFDRAVLDHAGPPRVAFMLDALDSLREWYRDRG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL++ G VI +L E +V ++ R+ A+V + L + +
Sbjct: 65 SDLVVARGDPTAVIPDLAVEYGVDTVTWGKDYSGLARERDAVVRQALDDADVAREAVQNA 124
Query: 170 LWQTPFYDIKNLNDLPVSHNEF-RKLQ-RPLTSPILPPTLAGAKLEADWGPLPT-----F 222
+ P N D F RK R T+P PP+ A + D LPT F
Sbjct: 125 VLHEPGEITTNDGDPYSVFTYFGRKWHDREKTAPYEPPS-ADELADVDGDALPTLADLGF 183
Query: 223 DE----------------LKEFVNENPWKLEE 238
DE L +F++EN ++ EE
Sbjct: 184 DEPEADVPAAGTDEARALLDDFLDENVYEYEE 215
>gi|448688515|ref|ZP_21694317.1| photolyase/cryptochrome [Haloarcula japonica DSM 6131]
gi|445779181|gb|EMA30118.1| photolyase/cryptochrome [Haloarcula japonica DSM 6131]
Length = 456
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR+ D+ GL AA+ V+ +YV D +LS ++ + L+++ ++
Sbjct: 3 VFWHQRDLRIPDNRGLTAAAADDEVLSVYVLDTDLLSTVGKRQRAFLLAGVRALKQAYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
G DL++R G V+ +V+E A V+ E R VD++L SL D
Sbjct: 63 HGGDLLVRKGSAVEVLSNVVDEYDADRVYYNEHYRPARRNRQRRVDKSLPTKSLTD 118
>gi|325105098|ref|YP_004274752.1| DASH family cryptochrome [Pedobacter saltans DSM 12145]
gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
Length = 433
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 28/194 (14%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVI 95
S + ++WF+ DLR+ D+ L+ A+ K +VP+Y+FD R + S + +I
Sbjct: 3 SRTILVWFRNDLRIHDNEILIEATLKSTEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFII 62
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
++ DL+KSLK G DL++ G+ E V+ +L++E V+ EV + + V++
Sbjct: 63 DSVTDLKKSLKALGGDLLVVKGKPEEVLPQLIKEYHVDEVYHHREVASEETDISSAVEDA 122
Query: 156 LAKVSLVDGKPKI--CLWQT---PFYDIKNLNDLPVSHNEFRK-------LQRPLTSP-- 201
L K S V+ K I L+ PF + D+P +FRK ++ P +P
Sbjct: 123 LWK-SQVNLKHFIGHTLYHKEDLPF----PIKDIPDLFAKFRKKVEREGEIRDPFETPGQ 177
Query: 202 -ILPPTLAGAKLEA 214
+P +LA +++ A
Sbjct: 178 ISVPDSLASSEVPA 191
>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
Length = 430
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 46 SAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFD--HRILSRYSNEML-----ELVIFA 97
+A++WFK DLRV+D+ ++ A + + ++P+Y FD H ++Y + + ++ +
Sbjct: 4 TAIVWFKTDLRVEDNETIIKAILQSEQIIPVYCFDDSHFETTKYGFKKTGSFRAQFLLES 63
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L+DL K+L+ GS L+I G+ E I ++ +E KA VF++ EV + ++ +V L
Sbjct: 64 LQDLDKNLRAIGSGLVITKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKMVQNELF 123
Query: 158 KV 159
K+
Sbjct: 124 KL 125
>gi|389862600|ref|YP_006364840.1| deoxyribodipyrimidine photo-lyase [Modestobacter marinus]
gi|388484803|emb|CCH86343.1| Deoxyribodipyrimidine photo-lyase [Modestobacter marinus]
Length = 456
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 46 SAVIWFKQDLRVDDHLGLV----AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDL 101
+A++WF++DLR+ DH L+ AA AV+P++VFD R+ + ++ L DL
Sbjct: 3 TALLWFRRDLRLGDHPALLAAVDAAGPEGAVLPVFVFDDRLYGPSGDPRRVFLLDCLADL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
R ++ G L++R G V+ +LV E+ A SV + + R+ V+ L V L
Sbjct: 63 R---EQTGGALVLRTGDPAQVLPQLVAELGAGSVHVSADAGPYGRRRDTAVERALGDVPL 119
Query: 162 V 162
V
Sbjct: 120 V 120
>gi|390955135|ref|YP_006418893.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
gi|390421121|gb|AFL81878.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
Length = 434
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILSRYSNE--MLELVIFALEDLRK 103
++WF++DLR+DD++G A K+ V+P+++FD IL+ + L + L+ +R
Sbjct: 7 IVWFRRDLRLDDNVGFYKALHGKF-PVIPIFIFDSEILNELPKDDARLTFIFETLQKMRT 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L+EQGS + + G+ E + ++++ E +V + E + ++ A ++ LA+ +
Sbjct: 66 ELQEQGSSIALYHGKPEQIFKQIISEFDVQNVITNRDYEPYAKKRDAQIETLLAEKEI 123
>gi|381205367|ref|ZP_09912438.1| deoxyribodipyrimidine photolyase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 516
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 46 SAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILS-------RYSNEMLELVIFA 97
+ ++W + DLR+ DHL L A K ++ +Y + SN LE + +
Sbjct: 51 TTLVWLRNDLRLHDHLPLQCALEKSDRLLLIYCLPDSWFQPTTYGFPKISNVRLEFLFQS 110
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL- 156
L DLRK +E+G +L+ R G VI EL E + VFA E ++ + ETL
Sbjct: 111 LADLRKHAQERGGELIFRQGNPPKVIAELAEHYQVDGVFAHREHAPEEKREEDKLRETLK 170
Query: 157 AKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-------LQRPLTSP-ILP 204
+ L DG + + PF +L DLP + FRK + RP+ P ILP
Sbjct: 171 VPLRLYDGNSLLKETELPF----SLVDLPKVFSNFRKQVEKEVQISRPIAVPKILP 222
>gi|427711391|ref|YP_007060015.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
gi|427375520|gb|AFY59472.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
Length = 486
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLEL--VIFALEDLRKS 104
++W ++DLR+ DHLGL AA K VV L+ FD +IL + + ++ LEDL +
Sbjct: 17 LLWHRRDLRIQDHLGLAAAREKTAKVVGLFCFDPKILGGEDIAAVRVAYLVGCLEDLAQQ 76
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ GS L+I G VI +L + +KA +++ +VE + + V + LAK +
Sbjct: 77 YHQAGSQLLILQGEPTTVIPKLAQALKAQALYWHCDVEPYAQARDKAVAQALAKAGI 133
>gi|332662834|ref|YP_004445622.1| DASH family cryptochrome [Haliscomenobacter hydrossis DSM 1100]
gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
Length = 454
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILS--------RYSNEMLELVIF 96
A++WF+QDLR+ D+ L A + Y+ V+P+++FD R + + +I
Sbjct: 7 AIVWFRQDLRLHDNEALQDALRNAYE-VIPVFIFDERTFKGKTSFGFPKTGKYRAQFIIE 65
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
++ DLR+SL++ SDL++R G+ E+++ + +E K + +F E + I DE
Sbjct: 66 SVADLRQSLRKLNSDLIVRVGKTEDILFSMAKECKTSWIFCNRE---RTAEEARIQDELE 122
Query: 157 AKVSLVDGKPKICLWQTPFYDIK---NLNDLPVSHNEFRK-LQR--PLTSPILPP--TLA 208
++ + + + + +Y + P +FRK ++R P+ P+ P T
Sbjct: 123 NRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLSKPDRTFN 182
Query: 209 GAKLEADWGPLPTFDELKEFVNE 231
E G +P+ +EL V++
Sbjct: 183 PLSFEFPAGDIPSLEELGHNVDD 205
>gi|373954151|ref|ZP_09614111.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
gi|373890751|gb|EHQ26648.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
Length = 493
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 131/330 (39%), Gaps = 67/330 (20%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRI--LSRYSNEM-----LELVIFA 97
+ ++WF+ DLR+ D+ LV A K V+P++ FD+ ++RY ++ A
Sbjct: 13 TILVWFRNDLRIHDNEILVEALRKADKVLPVFCFDNFYFKITRYGTRKTGDFRTRFLLEA 72
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ DLRK+L++ G++L++R G ++I +L EE + V+ EV + + A V+ L
Sbjct: 73 VADLRKTLQQHGAELIVRSGDPVDIIPQLAEEYHVSEVYHHREVAFEETDISAKVEAVLW 132
Query: 158 KVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAG--AKLEAD 215
K L NL + H + K P +P K+E D
Sbjct: 133 KKKL------------------NLKHF-IGHTFYHKEDLPFPIKDIPDVFTTFRKKVERD 173
Query: 216 WGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRK 275
P F E ++ P + + + + D + L + + K
Sbjct: 174 SSIRPCF-ETPGNISIPPIDHPGEIPTLQQLGFDEPVDDSRAVLHFKG-----GETEALK 227
Query: 276 RLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFA 335
RL + F+ +D T N +L A ++
Sbjct: 228 RLHEYFWESDCLKTYKTTRNGLLGA--------------------------------DYS 255
Query: 336 TLFGPALCLGIISRRGVHYEAIKFEKERNA 365
+ F P L +G +S R V++E ++E+ER A
Sbjct: 256 SKFSPWLSVGCLSVRQVYWEVKRYEQERGA 285
>gi|443288138|ref|ZP_21027232.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
gi|385881715|emb|CCH22325.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
Length = 441
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLR 102
+G+A++ F +DLRV DH L + + VVPLYV D L+ S + AL DLR
Sbjct: 3 AGTAIVLFTRDLRVHDHPALATTCAAFDRVVPLYVLDP-ALAGLSANRTRFLHQALADLR 61
Query: 103 KSLKEQGSDLMIRFGR-VENVIRELVEEVKATSVFAEEEVEYH 144
+L+E+G DL++R G V IR L EV AT+V +V H
Sbjct: 62 DALRERGGDLVVRRGDPVAETIR-LAGEVGATAVALSADVSNH 103
>gi|399576486|ref|ZP_10770241.1| deoxyribodipyrimidine photo-lyase type i [Halogranum salarium B-1]
gi|399237930|gb|EJN58859.1| deoxyribodipyrimidine photo-lyase type i [Halogranum salarium B-1]
Length = 489
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ VVP++VFD IL+ ++ + ++ AL +LR ++ G
Sbjct: 5 WHRRDLRVADNRGLAMAAEAGTVVPVFVFDDEILAHAASPRVRFMLDALAELRAWYRDHG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSV 135
SDL++ G + V+ EL +E A V
Sbjct: 65 SDLLVAHGDPKEVLPELADEYDADRV 90
>gi|448583117|ref|ZP_21646586.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445730074|gb|ELZ81666.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 504
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 131/367 (35%), Gaps = 114/367 (31%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-------------ILSRYSNEMLE 92
+++ WF++DLR+ D+ L AA V+P+Y D R +
Sbjct: 5 TSLAWFRRDLRLHDNEALAAACDADGVLPVYCLDPREYGDRPFGGPDSFDFDKTGAHRAR 64
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ +L DLR SL+E+GSDL++R G E+V+ EL V A V + + V
Sbjct: 65 FRLESLSDLRSSLRERGSDLVVREGTPESVLPELAATVDADFVTVHTRPTPEESSVESAV 124
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNE-------FRKL----------- 194
+ L DG W + + +L+DLP++ +E FRK
Sbjct: 125 ERELGG----DGVDLRRFWG---HTLTHLDDLPMALSEVPDTYTTFRKAVESAVEGDEGG 177
Query: 195 ----------------QRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEE 238
+ PL+ P +PP A + D LP+
Sbjct: 178 DAGRSGESAGDGDPAGRDPLSEPDVPPLPVDAPVAGD---LPSLS--------------- 219
Query: 239 SWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVL 298
TL+ AE S R D+ D GG A L
Sbjct: 220 --TLVGTADAE----------------------SARASDDRGVLSFD------GGETAAL 249
Query: 299 NALQAYLRYLEGTVRDDW--QELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEA 356
+ +++Y+ W L+E GA +++ F P L G +S R V E
Sbjct: 250 DRVESYI----------WTGDHLREYKETRNGMLGADYSSKFSPWLNEGCLSPRSVKAEV 299
Query: 357 IKFEKER 363
++E R
Sbjct: 300 DRYEDRR 306
>gi|436838433|ref|YP_007323649.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
gi|384069846|emb|CCH03056.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
Length = 501
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 17/159 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFD---HRILSRYSNEMLELV-----IFAL 98
+ WF+ DLR+ D+ G AA + + V+P+YVFD R+L + + L+ + A+
Sbjct: 17 LYWFRNDLRLHDNEGFAAACMQARQVLPVYVFDPAAFRLLPTLNLKKTGLLRTNFLLEAV 76
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DLR SL+ +G DL++R G V+ +L EE++A +++A +EV + + + + L
Sbjct: 77 ADLRSSLRARGGDLIVRVGDPARVLADLAEEIEADAIYASKEVTSEETDVESALSKRLKP 136
Query: 159 VSLVDGKPKICLWQTPFYDIK----NLNDLPVSHNEFRK 193
++ +D + W + Y ++ N+ LP FR+
Sbjct: 137 LN-IDIE---FFWTSTLYHVRDLPFNVVKLPDVFTAFRQ 171
>gi|436834800|ref|YP_007320016.1| Deoxyribodipyrimidine photo-lyase [Fibrella aestuarina BUZ 2]
gi|384066213|emb|CCG99423.1| Deoxyribodipyrimidine photo-lyase [Fibrella aestuarina BUZ 2]
Length = 452
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 41 KGRSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALE 99
K + A++W ++DLR+ D+ L A K + V+PL++FD IL +++ V F E
Sbjct: 2 KPETPIAIMWHRRDLRLHDNAALYYALKAGRPVLPLFIFDKDILDHLNDKRDRRVEFIYE 61
Query: 100 D---LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+ ++++L +QGS L++R+GR +V +EL E +VF + E + + A V L
Sbjct: 62 EVLAMQQALHKQGSTLLVRYGRPLDVFKELASEYTLANVFTNYDYETYAKGRDAEVATYL 121
Query: 157 AKVS 160
V+
Sbjct: 122 KSVN 125
>gi|383622627|ref|ZP_09949033.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|448699507|ref|ZP_21699315.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|445780215|gb|EMA31115.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
Length = 474
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 130/339 (38%), Gaps = 91/339 (26%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFD--HRILSRYSNEML-----ELVIFA 97
+AV+WF+ DLR+ D+ L A + VVPLYV D R + Y E L +
Sbjct: 3 TAVVWFRDDLRITDNPTLADAVTAADEVVPLYVVDPRKRGETEYGTEKLGAHRARFRRES 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L +LR L+++G DL +R GR E V+ E+ V A +V+A+ + + V ETL
Sbjct: 63 LLELRAGLQDRGGDLFVRRGRPETVLPEVAGRVDADAVYAQTKPATEELETEVGVRETLP 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRP-------------LTSPILP 204
+ + W Y +++DLP S+ + P L +P P
Sbjct: 123 DDVSFERR-----WTHTLY---HVSDLPTSYERMQDTFTPWRKAVERECSVRDLVAP--P 172
Query: 205 PTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSK 264
+ L A G +PT ++ E D + L
Sbjct: 173 DAVPTPDLPA--GDVPT---------------------VSEYGLEAPTDDDRAVL----- 204
Query: 265 RNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLR 324
R + + ++RL++ F+ D+ N +L
Sbjct: 205 RFEGGESAGKRRLEEYFWEEDRLREYKETRNGLL-------------------------- 238
Query: 325 NAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
GA++++ F P L G +S R +H E ++E ER
Sbjct: 239 ------GAAYSSKFSPWLAAGCLSPRWIHEEVRRYEDER 271
>gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
Length = 483
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 8/107 (7%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRI-------LSRYSNEMLELV 94
R+ ++WF+ DLRV D+ L AAS ++P+Y FD R ++ + +
Sbjct: 11 RTQVKIVWFRNDLRVHDNDVLAKAASDADYLLPVYCFDPRQYETTSLGFAKTGAHRAQFL 70
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
I L +LR +L+ +GS L+IR G+ E VI +L + +A +V+A +E+
Sbjct: 71 IETLANLRANLEAKGSGLVIRIGKPEEVIADLAKATQAKAVYASQEI 117
>gi|374261679|ref|ZP_09620257.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
gi|363537773|gb|EHL31189.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
Length = 477
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 45 GSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRK 103
+A++WF+QDLR +D+ L A + +Q ++PLY++ L + L + AL+ K
Sbjct: 2 STAIVWFRQDLRCNDNQALAEACNHHQYIIPLYIYSQESLGAAQHWWLHHSLLALQ---K 58
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
LK+QG DL ++ G+ ++I EL++ K +V+
Sbjct: 59 ELKKQGLDLCLKQGQALSIIHELIKNHKIEAVY 91
>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
ATCC 33406]
gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cytophaga hutchinsonii ATCC 33406]
Length = 434
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 33/196 (16%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDH---RI----LSRYSNEMLELVIFAL 98
+++WFK DLR+ D+ LV A + ++P+Y D +I + N + ++ +L
Sbjct: 4 SIVWFKTDLRLHDNETLVRAIEQSDEIIPVYCLDEDHFKITPFGFQKTGNFRAQFLLESL 63
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
DL +L++ GS L++ G+ E + ++V++ +A VFA+ EV Y +Q A V++ + K
Sbjct: 64 NDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEAFKVFAKREVAYEEQQTEARVEKEIWK 123
Query: 159 VSLV-DGKPKICLWQT---PFYDIKNLNDLPVSHNEFRK-----------LQRP--LTSP 201
+ + L+ PF ++ D+P FRK Q+P + SP
Sbjct: 124 LGCTFESFSTSTLYHAQDLPF----SIKDIPEVFTNFRKKVEKESSIRSVFQKPAHIKSP 179
Query: 202 ILP----PTLAGAKLE 213
+P PT+ G L+
Sbjct: 180 AMPQLRLPTVKGLGLQ 195
>gi|433461813|ref|ZP_20419414.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
gi|432189636|gb|ELK46722.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
Length = 481
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 19/195 (9%)
Query: 46 SAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNEMLE-------LVIFA 97
A++WF+ DLRV DH L A + V+ +YVFD R + + + +I +
Sbjct: 4 GALVWFRNDLRVHDHHPLHQAVQSGKPVIGMYVFDPAAYERGEDGIRKTDRHRARFLIES 63
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ DLRK+L G L++R R I E+ E++K +V+ EE+ + + V + L
Sbjct: 64 IHDLRKNLGALGIPLIVRCRRTTEAIHEIKEKIKIDAVYVHEEIGREEQTVEENVRQALP 123
Query: 158 KVSL-VDGKPKICLWQT-PFYDIKNLNDLPVSHNEFRK-LQRPLTS---PILPPTLAG-A 210
+ V+ + L PF ++ +LP + ++FRK L++ TS I PP A
Sbjct: 124 DTAFHVEHGHNLYLPDDLPF----SIQELPDTFSQFRKRLEKSGTSVRKAIAPPAPEDQA 179
Query: 211 KLEADWGPLPTFDEL 225
+L G +PT + L
Sbjct: 180 ELPVPEGDIPTLETL 194
>gi|443318941|ref|ZP_21048182.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
gi|442781475|gb|ELR91574.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
Length = 494
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEM-------LELVIFALE 99
++W + DLR+ DH L AA K A V+P+Y D R + + ++ AL
Sbjct: 4 LLWLRNDLRLHDHAPLQAALKTGAQVIPVYCLDPRQFGQTDFGFPKTGAFRAQFLLEALA 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR+SL+ G DL++R G E V+ L EVK V+ EV + + + TLA
Sbjct: 64 DLRQSLRRLGGDLVVRQGFPEQVLPALAREVKCDRVYWHREVTPEETTVESALTRTLA-- 121
Query: 160 SLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
G W Y + L LP +FRK
Sbjct: 122 --TQGVAVQHFWGATLYHPDDLPFPLEQLPDIFTQFRK 157
>gi|411117034|ref|ZP_11389521.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713137|gb|EKQ70638.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 547
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 26/189 (13%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKSL 105
++WF++DLR+ DH + A+ AV+P++VFD +L + +E ++ AL L + L
Sbjct: 5 IVWFRRDLRIADHAPIYRAALRGAVIPVFVFDRALLHHPETAPARVEFLLQALMSLDQEL 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAKVSLVDG 164
+++G L+IR G V+ L+ E +A ++A + E + R A +++ LA+ L
Sbjct: 65 RDRGGRLIIRSGDPVTVLPNLIRETEADGIYAHIDFERIYGRVRDARLNQALAEQGL--- 121
Query: 165 KPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDE 224
KI W P +L P + L A +EAD P PT +
Sbjct: 122 --KI-RWFEPLGTTPDLIPYPAYRD-----------------LWYAHMEADLIPTPTRID 161
Query: 225 LKEFVNENP 233
E + +P
Sbjct: 162 TPETILSDP 170
>gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus]
Length = 549
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 143/364 (39%), Gaps = 88/364 (24%)
Query: 39 TSKGRSGSA------VIWFK-QDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS------ 84
T+ G SG A V+WFK DLR++DH L A + + V ++ D R
Sbjct: 10 TAGGASGIARGDTIGVVWFKCTDLRLEDHEPLALAHRNSSHVAHVFCIDDRWFGHSRRGT 69
Query: 85 -RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVI----RELVEEVKATSVFA-- 137
R S ++ ++ DL+ L+ +GSDL+IR G EN I L A +V+A
Sbjct: 70 RRMSAARCRFLLESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHP 129
Query: 138 -----EEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL-----NDLPVS 187
E +V ++ +++V G +W +D +L N LP
Sbjct: 130 DLCSEENDVHAAVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEV 189
Query: 188 HNEFRKLQRP---LTSPILPPTLAGAKLEADWGPLPT-FDELKEFVNENPWKLEESWTLI 243
FRK P + SP+ PLP+ F L +++N +
Sbjct: 190 FTPFRKAVEPNCKIRSPV---------------PLPSPFRPLPAGLHDN--------AVT 226
Query: 244 NNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQA 303
++ T++L LG +R+ R L F+ GG A L +Q
Sbjct: 227 PTLTVAIPTTEELG-LGTAPERDA------RSVL---HFI--------GGETAGLRRVQT 268
Query: 304 YLRYLEGTVRDDWQE--LQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEK 361
Y+ W+E L+E G F++ F P L LG +S R + E K+E
Sbjct: 269 YI----------WEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIRKYET 318
Query: 362 ERNA 365
+R A
Sbjct: 319 DRIA 322
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 29/206 (14%)
Query: 44 SGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFD--------HRILSRYSNEMLELV 94
S + + + DLR+ D+ + A + ++PLY FD H + L +
Sbjct: 4 SRTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFL 63
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVD 153
+ +++DLR LK+ GS L++R G+ E+V+ EL++++ + S A EEV + V+
Sbjct: 64 LDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKS----VE 119
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSH--------NEFRKL--QRPLTSPIL 203
E L ++ + W + Y + +DLP SH +FRK + P+L
Sbjct: 120 EKLKEICCQNKVRVQTFWGSTLY---HRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVL 176
Query: 204 --PPTLAGAKLEADWGPLPTFDELKE 227
P + + GP+PTFD L +
Sbjct: 177 STPEQVKSPPSGLEEGPIPTFDSLGQ 202
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 29/206 (14%)
Query: 44 SGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFD--------HRILSRYSNEMLELV 94
S + + + DLR+ D+ + A + ++PLY FD H + L +
Sbjct: 4 SRTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFL 63
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVD 153
+ +++DLR LK+ GS L++R G+ E+V+ EL++++ + S A EEV + V+
Sbjct: 64 LDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKS----VE 119
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSH--------NEFRKL--QRPLTSPIL 203
E L ++ + W + Y + +DLP SH +FRK + P+L
Sbjct: 120 EKLKEICCQNKVRVQTFWGSTLY---HRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVL 176
Query: 204 --PPTLAGAKLEADWGPLPTFDELKE 227
P + + GP+PTFD L +
Sbjct: 177 STPEQVKSPPSGLEEGPIPTFDSLGQ 202
>gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula]
Length = 235
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFA 97
+A++WF+ DLRV D+ L A+ +V+P+Y FD + S+ +I +
Sbjct: 119 TAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIES 178
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEV 130
+ DLRK+LK +GSDL++R G+ E V+ EL +++
Sbjct: 179 ISDLRKNLKARGSDLVVRVGKPETVLVELAKKL 211
>gi|428213303|ref|YP_007086447.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
gi|428001684|gb|AFY82527.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
Length = 486
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEM-------LELVIFALE 99
++W++ DLRV DH L A + A +VP+Y FD R S+ + + ++ ++
Sbjct: 7 ILWYRNDLRVHDHEPLYRALETHAPIVPIYCFDPRQFSKTAYGFPKTGPFRAQFLLESVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+LR+SL+ GS+L+I+ G+ E ++ ++ +V A++++ +EV
Sbjct: 67 NLRQSLQNLGSNLIIKIGKPEVILPQIAHQVNASAIYFHQEV 108
>gi|302834309|ref|XP_002948717.1| hypothetical protein VOLCADRAFT_89124 [Volvox carteri f.
nagariensis]
gi|300265908|gb|EFJ50097.1| hypothetical protein VOLCADRAFT_89124 [Volvox carteri f.
nagariensis]
Length = 751
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLV-------------AASKYQAVVPLYVFDHRILS--RY 86
G + V+W++ DLRVDDH GL ++ + + P+++ D LS +
Sbjct: 70 GPTEPVVLWYRNDLRVDDHPGLTAAAVAVGAAGPSGTSASPRPLAPVFLLDPVRLSYLAF 129
Query: 87 SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
+ E + ALE LR L+ +GSDL IR G E + + V + +V +E EVE R
Sbjct: 130 TPGGPEALSAALERLRAELRVRGSDLAIRVGSWEQQLTAVARTVGSRAVVSEAEVELRWR 189
Query: 147 -QMMAIVDETLAKVSLVDGKPKICLWQTPFYDIK 179
A +D + + + LW+ +DI+
Sbjct: 190 LPAGAALDRARDALGVASYGWRAALWRADHFDIR 223
>gi|253997258|ref|YP_003049322.1| deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
Length = 473
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 100/189 (52%), Gaps = 38/189 (20%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEM---LELVIFALEDL 101
++++WF++DLR DH L A K Q V ++VFD IL++ S++ +E + ++++L
Sbjct: 5 TSLVWFRRDLRDYDHAALYYALKASQQVYCVFVFDTDILNQLSDKADRRVEFIWESVQEL 64
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE--------------------EEV 141
+ +L+++GSDL++ G ++ + +L + ++A +VFA ++
Sbjct: 65 KTALQQRGSDLIVLHGSAQHEVPQLAQTLQAQAVFANHDYEPSAIARDAQVAQQLQAHDI 124
Query: 142 EYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD--IKNLNDL-----PVSH--NEFR 192
++H + AI ++ +V + KP TP+ + +K +ND PV H N+
Sbjct: 125 DFHHYKDQAIFEKD--EVLTMAHKPYSVF--TPYKNAWLKTVNDFYLKAYPVEHYLNKLA 180
Query: 193 KLQ-RPLTS 200
K+Q +PL S
Sbjct: 181 KIQPQPLAS 189
>gi|157412732|ref|YP_001483598.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9215]
gi|157387307|gb|ABV50012.1| Deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9215]
Length = 497
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR+D++ L + K ++P+Y+F+ + ++ +S + ++ DLR SL
Sbjct: 6 ILWFKKDLRIDENEALYESLKDNDILPIYIFEIEVWNQKTHSRRQWQFCKESVLDLRNSL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
KE G L+IR G V N+ E+ + +++ +E
Sbjct: 66 KEIGQPLIIRTGNVINIFEEISSKFNVVGIYSHQET 101
>gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma
proteobacterium HTCC2148]
gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma
proteobacterium HTCC2148]
Length = 483
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDLRKS 104
+ WF++DLR+ D GL AA + + V+P ++ D ++ + +L+ L KS
Sbjct: 8 IYWFRRDLRLTDLPGLHAALASGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQALTKS 67
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG 164
+ EQG +L++R G + + LV E A +V+ E E R++ + E LAK G
Sbjct: 68 VAEQGGNLLVRRGDTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELAK----SG 123
Query: 165 KPKICLWQTPFY---DIKNLNDLP 185
CL T F+ +++N + LP
Sbjct: 124 AALHCLPGTLFFRPHEVRNGSGLP 147
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ--AVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRK 103
+ WF++DLR+ D+ L AS V+PL++ D IL R + +I AL DL
Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDLDA 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
+L+ +GS L+IR GR +VIR +V+E AT V + R+ A V+ L +++
Sbjct: 64 NLRARGSRLVIRRGRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRDLNVET 123
Query: 164 GKPKICLWQTPFYDIKNLNDLPVS-HNEFRKLQRPLT 199
+ + +P D++ + P + + +R+ R LT
Sbjct: 124 SIAEDAVVFSPD-DVRTGDGRPYTVYTPYRRRWRALT 159
>gi|402823473|ref|ZP_10872896.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. LH128]
gi|402262964|gb|EJU12904.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. LH128]
Length = 455
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD-----HRILSRYSNEMLELVIFAL 98
S ++W ++DLR+ D + A++ V+P+Y+ D HR + S L +L
Sbjct: 2 SSPVIVWLRRDLRLSDQPAIAEAARKGPVIPVYILDDETPRHRAMGGASRWWLH---HSL 58
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
E L +L+E+GS L++R GR + V+ +L EE A V A E R V + L
Sbjct: 59 ESLGAALQEKGSRLILRRGRSDEVLAKLAEETGAQEVHALHHYEPWWRNAEKAVGKVL 116
>gi|255533599|ref|YP_003093971.1| DASH family cryptochrome [Pedobacter heparinus DSM 2366]
gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
Length = 430
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 25/201 (12%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRIL--SRYSNEMLELV--IFA 97
++ ++WF+ DLR+ D+ LV A +K +++P+Y FD R +R+ +V F
Sbjct: 2 KNKKILVWFRNDLRLHDNEMLVEAIAKSDSILPVYFFDPRYFENTRFGTAKTGIVRASFL 61
Query: 98 LED---LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
LE LRK+ + G D+++ G+ E++IR+LVE+ V+ EV ++ V++
Sbjct: 62 LESILSLRKAFQRFGGDILLVQGKPEDMIRDLVEQFDIAEVYHHREVGPEETEISGHVED 121
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEF--------RKLQRP--LTSPILP 204
L + KI L + + N DLP + +K +R + + L
Sbjct: 122 LLWTL-------KINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKACFLT 174
Query: 205 PTLAGAKLEADWGPLPTFDEL 225
P ADWG LP+ +L
Sbjct: 175 PEHIDFVENADWGQLPSLKDL 195
>gi|379729344|ref|YP_005321540.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
gi|378574955|gb|AFC23956.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
Length = 466
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 128/343 (37%), Gaps = 87/343 (25%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--------SRYSNEMLEL 93
++ + WF+ DLR+ D+ L A K + V P+YVFD R ++ +
Sbjct: 9 KAKRVIAWFRLDLRLHDNEMLTEAIKAGEEVYPVYVFDERTFGGKTESGFAKTGPRRCQF 68
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
+I A+ DL++ L+ G DL+IR G+ E + +L +E+K VF E Y ++
Sbjct: 69 IIEAVADLKQQLQALGIDLLIRRGKAEEEVFKLAQELKTGWVFCNREKTYEEELQQNRLE 128
Query: 154 ETL----AKVSLVDGKPKICLWQTPFYDIKNLNDLPVSH-----NEFRKLQRPLTSPILP 204
E L ++ GK PF P++H +FRK LT P+
Sbjct: 129 EKLWSIGQEIRFFRGKMLYYTQDLPF---------PIAHTPDIFTQFRKEVEKLT-PVRA 178
Query: 205 PTLAGAKLEADWG---PLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGK 261
P L K W PL +L +F E P T+L K
Sbjct: 179 P-LPKPKAFNPWSHRLPLGDLPQLSDFGWEMP-----------PQDDRTVLQFK------ 220
Query: 262 RSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQE 321
GG L L YL E ++E +
Sbjct: 221 ------------------------------GGETEGLKRLHYYL--WESDCIASYKETRN 248
Query: 322 KLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERN 364
L GA +++ F P L G +S + ++ E ++EKER
Sbjct: 249 GLL------GADYSSKFSPWLAQGCLSPKQIYDEIKRYEKERT 285
>gi|428182576|gb|EKX51436.1| induced by DNA damage [Guillardia theta CCMP2712]
Length = 493
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 150/345 (43%), Gaps = 78/345 (22%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-------YQAVVPLYVFDHRIL--SRYSNEML--- 91
G V+WF+ DLR+ D++ + ASK +V+P+Y FD R S+Y
Sbjct: 3 GGRVVLWFRNDLRLTDNVLIAEASKRFLASNSALSVLPVYCFDPRFFAQSQYGPRKTGVL 62
Query: 92 --ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV-EYHLRQM 148
+ ++ ++ DL+K L+ GSDL++ G+ E +I L++ + T+V A+EEV + LR
Sbjct: 63 RAKFLLESVADLKKRLQGVGSDLLVLSGKPEVIIPRLMQSGEDTTVLAQEEVTDEELR-- 120
Query: 149 MAIVDETLAK-VSLVDGKPKICLWQTPFY--DI---KNLNDLPVSHNEFRKL--QRPLTS 200
VD + + ++ + GK + T F+ D+ + L D+P F++ ++
Sbjct: 121 ---VDRAVKRAIAPLGGKLHLLWGHTLFHRDDLPYRQGLTDMPDVFTPFKEACERKSKVR 177
Query: 201 PILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLG 260
P + G + G +P E+ KL+E + ++ + +K
Sbjct: 178 KCFPYPVKG-----NLGVVP----------EDAKKLDEGLPSLESLGFSAQEVEGAAK-- 220
Query: 261 KRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQE-- 318
PR L FV GG +A L+ +Q Y+ W++
Sbjct: 221 ----------PDPRSVLQ---FV--------GGESAGLDRIQHYI----------WKQDC 249
Query: 319 LQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
L++ GA +++ F L G IS R ++ E ++E +R
Sbjct: 250 LKDYFETRNGMIGADYSSKFSAWLAHGCISPRFIYEEVQRYESQR 294
>gi|383934346|ref|ZP_09987788.1| cryptochrome-like protein cry2 [Rheinheimera nanhaiensis E407-8]
gi|383704802|dbj|GAB57879.1| cryptochrome-like protein cry2 [Rheinheimera nanhaiensis E407-8]
Length = 504
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVF--DHRILSRYSNEMLELVIFALEDLRK 103
+A++WFK+DLR++DH L+AA+K AVVPLY+ D+ S + + AL L +
Sbjct: 2 TALVWFKRDLRLNDHQPLLAAAKQGAVVPLYIIEPDYWQQPDVSLRHWQYLSVALMQLNR 61
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L G L++ G V+++L + T V++ EE
Sbjct: 62 QLSALGQPLLVVKGPATAVLKQLCQRFCITDVYSHEET 99
>gi|303276695|ref|XP_003057641.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460298|gb|EEH57592.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 781
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 44 SGSAVIWFKQ-DLRVDDHLGLV--AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALED 100
SG+ ++WF+ DLRV DH GL AA +AV+PL+VFD ++ + + A+
Sbjct: 371 SGAHIVWFRAGDLRVHDHPGLAEAAAMTTRAVIPLFVFDPSEIAHGTPSDARALHEAVVA 430
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
LR SL+ GSDL++R G + + + ATS+ A E+E+ +A ETLA +
Sbjct: 431 LRASLRALGSDLVVRVGDPSMEMPSVAAALGATSLAAARELEW---ARVAGWRETLA--A 485
Query: 161 LVDGKPKICLWQTPF 175
L K W P
Sbjct: 486 LRAAGVKCDTWHAPL 500
>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
Length = 432
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
+V WF++DLR++D+ GL A + + V+PL++FD IL ++ V F +++L+
Sbjct: 5 SVFWFRRDLRLEDNTGLYYALQQETDVLPLFIFDRTILDDLEDKTDARVSFIHDQIQNLK 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+ L+++GS L++++G E V +EL+++ + +++ + E
Sbjct: 65 EELEKKGSTLLVKYGTPEEVYQELIKKFEIQAIYTNRDYE 104
>gi|448409751|ref|ZP_21574878.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
gi|445672522|gb|ELZ25094.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
Length = 473
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-------QAVVPLYVFDHRILSRYSNEMLELVIFALED 100
V W+++DLR D+ GL AA+ VVPL+VFD +L+ + ++ AL+
Sbjct: 3 VHWYRRDLRAADNRGLAAAAGRLEDVPADAPVVPLFVFDRDVLAHAGPPRVAFMLDALDS 62
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
LR+ +E+GSDL++R G V+ + E A +V EEV
Sbjct: 63 LREWYRERGSDLVVRHGDPREVVPAVAAEFDADAVTWGEEV 103
>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
Length = 472
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ DH L AA + V+P++++D S + + L + ++ DL SL
Sbjct: 7 LMWFRRDLRLGDHEALTAACDADRPVIPVFIYDELTESMGAAPKMRLGL-SVADLAASLN 65
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
E+GS L++R G+ +V+REL+++ A +V+
Sbjct: 66 EKGSKLILRRGKALDVLRELIKDTGADTVY 95
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 29/206 (14%)
Query: 44 SGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFD--------HRILSRYSNEMLELV 94
S + + + DLR+ D+ + A + ++PLY FD H + L +
Sbjct: 4 SRTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYSFDPRHYQGTYHYNFPKTGPFRLRFL 63
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVD 153
+ +++DLR LK+ GS L++R G+ E+V+ EL++++ + S A EEV + V+
Sbjct: 64 LDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLGSVSTVAFHEEVASEEKS----VE 119
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSH--------NEFRKL--QRPLTSPIL 203
E L ++ + W + Y + +DLP SH +FRK + P+L
Sbjct: 120 EKLKEICCQNKVRVQTFWGSTLY---HRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVL 176
Query: 204 --PPTLAGAKLEADWGPLPTFDELKE 227
P + + GP+PTFD L +
Sbjct: 177 STPEQVKSPPSGLEEGPIPTFDSLGQ 202
>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
gi|82239825|sp|Q75WS4.1|CRYD_XENLA RecName: Full=Cryptochrome DASH
gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
Length = 523
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 139/331 (41%), Gaps = 75/331 (22%)
Query: 51 FKQDLRVDDHLGLVAASK-YQAVVPLYVFD--HRILSRYSN------EMLELVIFALEDL 101
+ DLR+ D+ L A + +VPLY FD H + + Y N L+ ++ ++ DL
Sbjct: 12 LRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDL 71
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEV-KATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
R +LK++GS+L++R G+ E VI +LV+++ ++V EE + + V + ++
Sbjct: 72 RITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRL- 130
Query: 161 LVDGKPKICLWQTPFYD-----IKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEAD 215
G W + Y ++++ LP + +FRK +E
Sbjct: 131 ---GIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRK-----------------AVETQ 170
Query: 216 WGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPR 274
PTF ++ + + P LEE S + + LTD PR
Sbjct: 171 GKVRPTF-QMPDKLKPLPSGLEEGSVPSHEDFDQQDPLTD------------------PR 211
Query: 275 KRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASF 334
S GG + L L+ Y + E + +++ + L G +
Sbjct: 212 TAFPCS-----------GGESQALQRLEHY--FWETNLVASYKDTRNGLI------GLDY 252
Query: 335 ATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
+T F P L LG +S R ++ + K+EKER A
Sbjct: 253 STKFAPWLALGCVSPRYIYEQIGKYEKERTA 283
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDL 101
+ +++ WF+ DLR+ D GL+AA+K V+P++V+D + +S + +L+ L
Sbjct: 2 ANASLYWFRHDLRLADLPGLIAAAKAGTVIPVFVWDEALGGDWSLGGASQWWLHHSLQSL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L GS L++R G VI +L+EE A +VFA + +
Sbjct: 62 AADLNGLGSRLILRRGETSKVIAKLLEETGAQNVFASRQYQ 102
>gi|326799096|ref|YP_004316915.1| DASH family cryptochrome [Sphingobacterium sp. 21]
gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
Length = 434
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 46 SAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHRILSRYSNEM-------LELVIFA 97
+ ++WF+ DLRV D+ + A +K VVP+YVFD R + N M + ++ +
Sbjct: 5 TILVWFRNDLRVRDNEILWQALAKADRVVPVYVFDPRQFTPLKNGMHKTGVIRAKFILES 64
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
++DLR SL+ G+DL++ G E ++ L E + V+ EV + +V+E L
Sbjct: 65 VQDLRLSLRSLGADLLVVSGYPEEILPTLAERYQVKEVYHHREVAKEETHISTLVEEALW 124
Query: 158 KVSL 161
K L
Sbjct: 125 KKRL 128
>gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 541
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 3 LISFPRF--LSRPLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDH 60
+IS RF L++ E + + CV T K V+WFK+DLRV DH
Sbjct: 1 MISLFRFFGLAQKTEETTETKIHFSWPCV--------QTLKSGGMMQVVWFKRDLRVSDH 52
Query: 61 LGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGR 118
L AS+ V+PLYV + + + S V + +LR L E G L++R G
Sbjct: 53 PALAQASEVGPVLPLYVVEPELWQQPDASARQWNFVAETIAELRSDLGELGQPLIVRVGE 112
Query: 119 VENVIRELVEEVKATSVFAEEEV 141
+E V+ EL+ +++ EE
Sbjct: 113 IEAVLSELLNRGLIDVLWSHEET 135
>gi|448434817|ref|ZP_21586515.1| DNA photolyase FAD-binding protein [Halorubrum tebenquichense DSM
14210]
gi|445684440|gb|ELZ36816.1| DNA photolyase FAD-binding protein [Halorubrum tebenquichense DSM
14210]
Length = 461
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W + D R D+ GL AA++ AVVP +V+D +L+ + + L + +E
Sbjct: 3 LFWHRGDARTRDNAGLAAAAREGAVVPAFVYDADLLATVGARQRAFFLRHVNRLEERYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL-VDGKP 166
GSDL++R G + V+ +L E +A +VF E R V++ LA + D +
Sbjct: 63 LGSDLIVRAGDPDEVLADLAAEYEAETVFYNEHYRPARRNRQRAVEDALAAAGVGTDSRT 122
Query: 167 KICL 170
+ L
Sbjct: 123 DLVL 126
>gi|307108702|gb|EFN56941.1| hypothetical protein CHLNCDRAFT_143484 [Chlorella variabilis]
Length = 798
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 30/149 (20%)
Query: 48 VIWFKQDLRVDDHLG----------------LVAASKYQAVVPLYVFD-----HRILSRY 86
++W+K+DLR+DDH G AA + VVP++ FD H +L R
Sbjct: 33 LLWYKRDLRLDDHPGWHAAAAAAAAAAAAAADAAAGAPRGVVPVFCFDPARYAHLVLPRG 92
Query: 87 SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
E L AL L +SL++ GS L++R G E + L E+ A V AE+EVE R
Sbjct: 93 GAEAL---CRALASLDRSLRQHGSRLVVRVGAWEEQLPLLAAELGAAGVVAEQEVEADWR 149
Query: 147 QMMAIVDETLAKVSLVDGKPKICLWQTPF 175
Q + V L G + W+ P
Sbjct: 150 QGVERVAAAL------PGGVAVHHWRAPL 172
>gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus]
Length = 571
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 136/345 (39%), Gaps = 73/345 (21%)
Query: 48 VIWFK-QDLRVDDHLGLVAASKYQA-VVPLYVFDHRIL-------SRYSNEMLELVIFAL 98
++WFK DLR++DH L A + A V ++ D R S+ S ++ ++
Sbjct: 26 IVWFKYSDLRLEDHEPLALAHRESAQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESV 85
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV-----FAE-----EEVEYHLRQM 148
DLR L+E+GSDL++R G E+VI L + SV FA EE + H
Sbjct: 86 ADLRARLRERGSDLLVRRGHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADVHAAVK 145
Query: 149 MAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL-----NDLPVSHNEFRK-LQRPLTSPI 202
A+ + A W +D+ +L + +P +FRK ++ + +
Sbjct: 146 SALAAASSAGRGGGAAVAVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESKYSCKM 205
Query: 203 LPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKR 262
PP L + + P+PT + P I T + LG
Sbjct: 206 RPPV----PLPSPFRPVPTGTTQDDGEASAP---------------GAIPTTEELGLGTA 246
Query: 263 SKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQE--LQ 320
+R+ +S F + G T G L +Q+Y+ W E L+
Sbjct: 247 PERDA-----------RSVFPFNGGETAG------LRRVQSYI----------WDEDRLR 279
Query: 321 EKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
E G+ F++ F P L LG +S R + E K+E +R A
Sbjct: 280 EYKVTRNGLLGSGFSSKFSPWLALGCLSPRTIVKEIRKYETDRIA 324
>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
Length = 469
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY--SNEMLELVIFALED 100
+ +A+ WF++DLR+DDH L AA ++ + VV ++VFD IL + ++ + +L +
Sbjct: 2 TTTALCWFRRDLRLDDHAALYAALRHSERVVCVFVFDRDILKHLPAQDRRVDFIWHSLVE 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L++ L GSDL++ GR + I L +E A++V+A + E
Sbjct: 62 LKEQLCALGSDLVVVSGRPVDCIPALAQEHGASTVWASRDYE 103
>gi|448410083|ref|ZP_21575032.1| photolyase/cryptochrome [Halosimplex carlsbadense 2-9-1]
gi|445672363|gb|ELZ24939.1| photolyase/cryptochrome [Halosimplex carlsbadense 2-9-1]
Length = 461
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++DLR+ D+ GL A+ VVP++V+D L ++ + +L ++ +E
Sbjct: 3 LFWHQRDLRLRDNRGLATAAADGPVVPVFVYDTDFLEHVGARQRAFLMRGVRELHEAYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD--------ETLAKV 159
+G DL++R GR V+ E+ E A +V E R+ +V+ +T+A+
Sbjct: 63 RGGDLVVRTGRPSEVLPEVAAEFGADTVVYNEHYRPARRERQQLVEAVCDRTEIDTVAET 122
Query: 160 SLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSPILPP 205
LV D L+D +H++F Q P SP P
Sbjct: 123 DLV------------LVDPGRLDDRYPNHSQFHNDWQQVPKQSPAPAP 158
>gi|399064694|ref|ZP_10747561.1| deoxyribodipyrimidine photolyase [Novosphingobium sp. AP12]
gi|398030435|gb|EJL23848.1| deoxyribodipyrimidine photolyase [Novosphingobium sp. AP12]
Length = 455
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD-----HRILSRYSNEMLELVIFAL 98
S ++W ++DLR+ D + A++ V+P+Y+ D HR + S L +L
Sbjct: 2 SSPVIVWLRRDLRLSDQPAIAEAARKGPVIPVYICDDETPRHRAMGGASRWWLH---HSL 58
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
L +L++QGS L++R GR + V+ +L EEV AT V A E R V + L
Sbjct: 59 SSLDAALRDQGSRLILRRGRSDEVLAKLAEEVGATEVDALHHYEPWWRNAEKAVAKHL 116
>gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
43160]
gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
43160]
Length = 454
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 46 SAVIWFKQDLRVDDHLGLV----AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDL 101
+A++WF++DLR+ DH L+ AA AVVP++VFD R+ + ++ L DL
Sbjct: 3 TALLWFRRDLRLADHPALLDAREAAGPDGAVVPVFVFDPRLWGPSGLPRRQFLLDCLADL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ L++R G V+ +LV EV A SV + + R+ A V+ L V L
Sbjct: 63 GAQVDGA---LVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRERDAAVERALGDVPL 119
Query: 162 V 162
V
Sbjct: 120 V 120
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR----YSNEMLELVIFALEDL 101
++ F++DLR+DD+LGL AA V+P ++FD R+ S ++ + ++ +LEDL
Sbjct: 8 SIFVFRRDLRIDDNLGLRAAVESSDEVIPCFIFDPRLASSKRLGFNPNAFQFLLESLEDL 67
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
++ K +G L + G E++I +L ++ A +VF E+
Sbjct: 68 QRQFKAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNED 106
>gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 536
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFD--HRILSRYSNEMLELVIFALED 100
SG VIWFK+DLRV DH L AA A ++PLY+F+ + L +S + V +LE+
Sbjct: 8 SGVHVIWFKRDLRVHDHAALAAAVASGAPILPLYIFEPGYWALPEHSRRQFDFVRDSLEE 67
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L +LK +G+ L+IR G +V L ++ ++ A EE
Sbjct: 68 LDAALKARGTKLVIRMGSAIDVFSALHQKHGIAAIHAHEET 108
>gi|443474143|ref|ZP_21064164.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
gi|442905078|gb|ELS29993.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
Length = 472
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 82/195 (42%), Gaps = 22/195 (11%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL-------SRYSNEMLELVIFALE 99
A++W KQDLR+DDH L AA + ++PL+V D + L R ++ +L
Sbjct: 4 ALLWLKQDLRLDDHPALHAAIQADRLLPLFVLDPQWLRPSPLGPRRLGVHRARFLLESLA 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV-EYHLRQMMAIVDETLAK 158
L L++ GS L++ G E VI LVE + V EEV + L +M +
Sbjct: 64 ALDAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEVLTLEEVAPFELDEMRRVRHALGVP 123
Query: 159 VSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKL--------QRPLTSPILPPTLAGA 210
++ G + P L LP N FR L Q T LPP GA
Sbjct: 124 LTEWPGNSLFREEELPV----PLQALPSVFNRFRDLVEARVHVFQPNPTPHALPPLPTGA 179
Query: 211 KLEADWGPLPTFDEL 225
A PLP+ L
Sbjct: 180 A--ALLTPLPSLSRL 192
>gi|374594255|ref|ZP_09667260.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
gi|373872330|gb|EHQ04327.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
Length = 434
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALEDLRK 103
+V WF++DLR+DD++G + A K V+P+++FD IL R + + + L+ +RK
Sbjct: 6 SVFWFRRDLRLDDNVGFLEALKSDLPVLPIFIFDTEILERLPKDDARVSFIHENLQKMRK 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
L++ GS L I G+ V ++L++ K VF + E + ++ + +++ L
Sbjct: 66 ELQKNGSSLAIYHGKPVEVFKDLLKNYKIQQVFTNRDYEPYAKKRDSEIEKLL 118
>gi|448688386|ref|ZP_21694219.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
gi|445779447|gb|EMA30377.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
Length = 465
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 6/207 (2%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP+++FD +L + ++ AL+ LR+ + +G
Sbjct: 5 WHRRDLRATDNAGLAAATPSDPVVPVFIFDRAVLDHAGPPRVAFMLDALDSLREWYRNRG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL+I G +V+ EL E A V ++ R+ A V + L + +
Sbjct: 65 SDLVIAEGDPTSVLPELATEYGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNA 124
Query: 170 LWQTPFYDIKNLNDLPVSHNEF-RKLQ-RPLTSPILPPTLAGAKLEADWGPLPTFDEL-- 225
+ P N D F RK R P PP+ E D LPT +L
Sbjct: 125 VLHEPGEITTNDGDPYSVFTYFGRKWHDREKEVPYDPPS-TDELAEVDGDALPTLADLGF 183
Query: 226 -KEFVNENPWKLEESWTLINNMSAETI 251
+ + P +E+ L+N+ E +
Sbjct: 184 EEPEADVPPAGTDEARALLNDFLDENV 210
>gi|126695730|ref|YP_001090616.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9301]
gi|126542773|gb|ABO17015.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
str. MIT 9301]
Length = 498
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLR 102
G ++WFK+DLR+ D+ L A K ++P+Y+ + I ++ +S+ + +L DLR
Sbjct: 3 GINILWFKKDLRIFDNEALCEAIKDNDILPIYIIELDIWNQNTHSDRQWQFCKESLIDLR 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+L E G L+IR G V N+ E+ + K +++ +E
Sbjct: 63 NALAEIGQPLIIRTGNVINIFDEISSKFKIKGLYSHQET 101
>gi|448704049|ref|ZP_21700589.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445796665|gb|EMA47166.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 475
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLEL----VIFALE- 99
+AV+WF+ DLR+ D+ L A + +VP+YVFD R + +L F E
Sbjct: 3 TAVVWFRDDLRLTDNPTLSRALEAAERIVPVYVFDPRRRGETQYDTPKLGPHRARFRRES 62
Query: 100 --DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138
DLR L+E+ DL++ G VE+VI ELV+ A +V+A+
Sbjct: 63 VLDLRTRLRERDGDLLVETGHVEDVIPELVDRYDAAAVYAQ 103
>gi|385332709|ref|YP_005886660.1| deoxyribodipyrimidine photo-lyase [Marinobacter adhaerens HP15]
gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [Marinobacter adhaerens HP15]
Length = 538
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVF--DHRILSRYSNEMLELVIFALEDLR 102
+ V+WFK+DLR DH LVAA+ + V+PLYV D+ L S + +L+DL
Sbjct: 29 TTVVWFKRDLRTRDHAPLVAAASLGEPVIPLYVIEDDYWQLPDTSGRQWAFIRDSLDDLD 88
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
+ L++ GS L++ G V + +++L +F +E H
Sbjct: 89 RQLRKAGSQLLVIRGSVTDALKKLQARQGIDRIFCHQETGGH 130
>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
gi|81834455|sp|Q7NMD1.1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
Length = 500
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEML-----ELVIFA 97
+ ++W++ DLRV DH L +A K VV LY FD R + + E ++ +
Sbjct: 5 TVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLES 64
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ DLR+SL++ GSDL++R G E VI LV E++ +V EV
Sbjct: 65 VADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEV 108
>gi|87303611|ref|ZP_01086390.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
gi|87281835|gb|EAQ73799.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
Length = 508
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 19/230 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKSL 105
V+WFK+DLRV DH L+ AS V+PL V + + S S + +LEDLR++L
Sbjct: 6 VVWFKRDLRVADHQPLLQASFLGPVLPLMVVEPELWRQSDASARQWDFCAESLEDLRRAL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
G L++R G VE V+ +++ +E D +A+ +
Sbjct: 66 AGLGQPLVVRIGTVEEVLERARCRFGIAGLWSHQETG---NGWTYARDRRVARWAKSHSI 122
Query: 166 PKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEA-DWGPLPTFDE 224
P I + P + + + L + R+ + + P++PP A L D G +P+ E
Sbjct: 123 PWI---EIPSFGV--IRRLGSRNGWARRWEARMAEPMVPPPEALQPLAGLDPGAIPSASE 177
Query: 225 LKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPR 274
L + P + + + +L L+ G R R L+ SPR
Sbjct: 178 LGLAPDPCPGR-----QVGGRQQGQAVLESFLNGRGARYHRELS---SPR 219
>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
Length = 455
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKSL 105
++WF+QDLR+ D L+AA++ V+P+Y+ D + + +LE L K L
Sbjct: 6 IVWFRQDLRLHDQPALLAAAEAGPVLPVYILDDETPGDWKMGGAQRWWLHHSLEALAKDL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG 164
K GS L++R GR V++ L +E A ++ A E R+ DE ++ L DG
Sbjct: 66 KALGSRLILRRGRAVEVLQALSKEAGAEAIHAIRHYEPWWRKAE---DELGDRLCLYDG 121
>gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
Length = 478
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 48/212 (22%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEML-------------- 91
+AV+W ++DLR D+ L AA V+P+Y F+ R RY
Sbjct: 4 TAVVWLRRDLRTRDNATLAAACAADRVLPVYCFEPR---RYGQRAFGGAASFEYDGVGAG 60
Query: 92 --ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR-QM 148
+ A+ DLR L+E GSDL +R GR + V+ +LVE V A HL Q
Sbjct: 61 RAQFEREAVGDLRDRLREIGSDLFVRHGRPDAVLPDLVEAVDAD----------HLHYQT 110
Query: 149 MAIVDETLAKVSLVDGKPKICLWQTPF-YDIKNLNDLPVSHNEF--------------RK 193
+ I +E + + P+ + + + + ++ DLP ++E +
Sbjct: 111 LPIPEERTREHQVRRALPEAVTVERHWTHTLHHVEDLPTPYDEMPDTFTPWRQSVEAESR 170
Query: 194 LQRPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
++ P+ +P +PP A A GP+P +L
Sbjct: 171 VREPIEAPAVPPVPADAPQP---GPIPELADL 199
>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
Length = 473
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ DH L AA + + +VPL++ D + + + + L F++E L +SL
Sbjct: 8 ILWFRRDLRLGDHPALAAAVATGRPIVPLFIHDEVVEGQGAAPKMRLG-FSVEALDRSLH 66
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L++R GR +V+R+++ E A +V+
Sbjct: 67 GTGSRLVLRRGRALDVLRKVITETGAGAVY 96
>gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
Length = 473
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ DH L AA K + V+PL++ D++ + + L + AL L +LK
Sbjct: 8 IVWFRRDLRLSDHPALAAACKTGRPVIPLFIHDNQSDALGAAPKFRLGL-ALACLGDTLK 66
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
E+GS L++R G +V+R+++E+ A +V+
Sbjct: 67 EKGSRLILRRGDALDVLRDVIEQTGAGAVY 96
>gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002]
gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002]
Length = 514
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF------ 96
S + ++W+++DLR+ DH L A QA + P Y FD R + + F
Sbjct: 3 SVNILLWYRRDLRLHDHQPLQEALAQQAQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFLR 62
Query: 97 -ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
A++DLR++L+ +GSDL++R E +I +L ++ + V+ EV + V+
Sbjct: 63 EAIQDLRQNLRAKGSDLIVRQDIPEKLIPDLCQQWQIDVVYCHREVTAEETR----VERK 118
Query: 156 LAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK 193
L + G W T +D +L N++P +FRK
Sbjct: 119 LRQALQEQGVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRK 160
>gi|392963663|ref|ZP_10329087.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
gi|387847626|emb|CCH51126.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
Length = 444
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY---SNEMLELVIFALEDLR 102
+++W ++DLR+ D+ L A K + V+P++V+D IL + + +E + ++ L+
Sbjct: 11 SLVWLRRDLRLHDNAALYYALKSGRPVLPIFVYDRLILDQLEDRDDRRVEFIHREIQQLQ 70
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
L + GS ++ R+GR +V++++VEE V+ + E + ++ A+V LA+
Sbjct: 71 AQLHQMGSTIIARYGRPIDVLKQVVEEFAVADVYTNYDYEVYAKERDAVVKAMLAE 126
>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
Length = 459
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 47 AVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSN---EMLELVIFALEDLR 102
++ F++DLRVDD+ GL A + V+P ++FD R++ + N + +I +LEDL+
Sbjct: 7 SIFIFRRDLRVDDNTGLDYALENSEYVIPCFIFDPRLIEKNDNFNPNSFQFLIESLEDLK 66
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
L ++G+ L + G ENV+ L+ + +VF +
Sbjct: 67 HQLNDKGAKLYLFHGIAENVVTNLINKNLIDAVFVNRD 104
>gi|408491999|ref|YP_006868368.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
gi|408469274|gb|AFU69618.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
Length = 485
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
V+WFK+DLR+ DH L +A K Q V+ LY+F+ +L S YS + +L D++K
Sbjct: 4 VVWFKRDLRLQDHAPLHLALQKKQPVLLLYIFEPILLKDSHYSERHFRFIKESLRDIQKQ 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L+ + ++I G E+V + + +++ SVF+ +E
Sbjct: 64 LEAYHTQVLIVEGNAEDVFKTIHQQLTIKSVFSHQET 100
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 136/336 (40%), Gaps = 79/336 (23%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRIL-------SRYSNEMLELVI 95
S +IW++ DLR+ D+ + A K +A ++P+Y FD R + + +
Sbjct: 3 SKRILIWYRNDLRIHDNKLIYQALKEKAQIIPVYCFDKRQFVQTYFGFPKTGKFRAQFLR 62
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
++ DLR SL++ GS+L++R G E +I L +E+ +V+ EEV + +A V+++
Sbjct: 63 ESVADLRNSLQKLGSNLIVRLGFPEKIIPALAQELNIDAVYYHEEVT---SEELA-VEKS 118
Query: 156 LAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAK 211
L K G W Y NL + +P FRK Q S I P + K
Sbjct: 119 LKKALSQIGVKVNSFWGATLYHPDNLPFKIHQIPELFTNFRK-QLEKKSTIDPTLPSPQK 177
Query: 212 LEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQH 271
L PLP + E P LE + E ++ D+ + L
Sbjct: 178 LP----PLPKVEP-----GEIPQLLE--------LGIEELIFDERAVL------------ 208
Query: 272 SPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRN-AESRD 330
GG L L Y W+ ++ LR E+R+
Sbjct: 209 -----------------KFQGGETKGLVRLHNYF----------WE--KDCLRTYKETRN 239
Query: 331 GA---SFATLFGPALCLGIISRRGVHYEAIKFEKER 363
G +++ F P L LG +S R ++ + K+E ER
Sbjct: 240 GMLGLDYSSKFSPWLALGCLSPRLIYEQVQKYESER 275
>gi|257388583|ref|YP_003178356.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
12286]
gi|257170890|gb|ACV48649.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
12286]
Length = 466
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++DLR D+ GL AA+ VVP++VFD +L + + ++ AL+ LR ++
Sbjct: 3 IHWHRRDLRTTDNAGLAAATADSPVVPVFVFDDAVLDHAAPPRVAFMLDALDSLRAQYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSV 135
+GSDL+I G I L E A V
Sbjct: 63 RGSDLVIAHGDPTAEIPRLAEAFGADGV 90
>gi|254438241|ref|ZP_05051735.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
gi|198253687|gb|EDY78001.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
Length = 511
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
++WFK+DLR++DH L+ AS+ A ++PLY+ + + S + L DL +
Sbjct: 7 IVWFKRDLRINDHGPLLTASQSNAPIIPLYIVEPEYWKQPFASRRHWHFIHDCLCDLDSA 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L E G +L+++ G VI+EL E + V+A EE
Sbjct: 67 LAEMGQNLIVKVGDACEVIKELHLEHHVSDVYAHEET 103
>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 148/355 (41%), Gaps = 80/355 (22%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQ----------AVVPLYVFDHRILS--- 84
+T+ A++WF+ DLR+ D+ L+ + V+PLY FD R
Sbjct: 2 STTNNTLKKALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSR 61
Query: 85 ----RYSN-EMLELVIFALEDLRKSL-KEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138
R +N + ++++LRK+L E G LMI+ G E +I L + + VFA+
Sbjct: 62 IGKFRKANANRTRFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHLCSQYEIEQVFAD 121
Query: 139 EEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEF-RKLQRP 197
+EV + ++++ + V+ G + + PF + +LP +F RK++ P
Sbjct: 122 KEVTSEETSIEQVLEKQI-NVNYSYGFSMVHVEDLPF----KIENLPHVFTDFRRKVENP 176
Query: 198 LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETIL--TDK 255
I+ P L ++ N KL S ++N + E L T
Sbjct: 177 --KLIVRPLLQ--------------------LSPNEKKLISS-RVVNLIQDENALGKTPD 213
Query: 256 LSKLG---KRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTV 312
L LG + + N PR L GG + L L YL
Sbjct: 214 LKVLGYTDEEISEMMENLKDPRSVLH-----------FKGGEDEALARLNDYL------- 255
Query: 313 RDDWQELQEKLRN-AESRD---GASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
W Q++L+ E+R+ G ++++ P L LG IS R +++E ++EKER
Sbjct: 256 ---WT--QDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPRKIYHEVKRYEKER 305
>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
Length = 465
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 3/178 (1%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP+++FD +L + ++ AL+ LR+ +++G
Sbjct: 5 WHRRDLRATDNAGLAAATPSDPVVPVFIFDTAVLDHAGPPRVAFMLDALDSLREWYRDKG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL++ G +V+ EL + A V ++ R+ A V + L + +
Sbjct: 65 SDLVVAEGDPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNA 124
Query: 170 LWQTPFYDIKNLNDLPVSHNEF-RKLQ-RPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
+ P N D F RK R +P PP+ A + D LPT +L
Sbjct: 125 VLHEPGEITTNDGDPYSVFTYFGRKWHDREKAAPYDPPS-ADTLADVDGDALPTLADL 181
>gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 551
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 26/180 (14%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLV------AASKYQAVVPLYVFDH-------RILS 84
ATS R+ ++WF+ DLR+ D+ + S VVP+YVFD R L+
Sbjct: 2 ATSSPRT-RVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLA 60
Query: 85 RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRE--LVEEVKATSVFAEEEVE 142
R+ + I ++DL+++L+ GSDL++R G+ E+VI E L T V + EV
Sbjct: 61 RFGAGRGKFTIECVDDLKRALRGVGSDLLVRCGKTEDVITELTLTGANDKTIVLTQTEVT 120
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKIC--LWQTPFYDIKN--------LNDLPVSHNEFR 192
M V+ + + G LW + Y + L+DLP FR
Sbjct: 121 SEETDMDRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTPFR 180
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRI--LSRYSNEMLELVIFALEDLRKS 104
++WF++ LR+ DH L AA+K VV Y++D L + +L L+
Sbjct: 7 IVWFRESLRLSDHPALYAAAKSGGPVVCSYIYDQESSGLRHLGAATRWWLAQSLRALQAD 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
LK G+DL+IR GR V+ EL E +A++V+ + + R++ + V+ L ++ +
Sbjct: 67 LKTLGADLIIRRGRAAQVLVELARETRASAVYWNDVAQAGPRRVASSVEAGLGEIGVA 124
>gi|448717562|ref|ZP_21702731.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445785862|gb|EMA36647.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 470
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASK--YQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
V W ++DLRV D+ GL A +VPL+V D IL S + ++ AL LRK
Sbjct: 3 VHWHRRDLRVRDNRGLARAGSGSDDRIVPLFVLDPTILEHASPVRVSCLLEALSGLRKQY 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
+E+G DL++R G +V+ + E A +V E+ R+ V TL +
Sbjct: 63 RERGGDLLVRRGEASDVVPAVASEYDAEAVSWNEDYSGLARERDRAVTATLEDDGIAVET 122
Query: 166 PKICLWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSPILPPT---LAGAKLEADWGPLP 220
+ P N + + F K R +P+ PPT LA + + PLP
Sbjct: 123 VHDRIVHEPGSITPNSGEHYSVFSYFWKKWRDREKPAPVDPPTDADLADLQEKDVTEPLP 182
Query: 221 TFDEL 225
+ +EL
Sbjct: 183 SLEEL 187
>gi|392963931|ref|ZP_10329352.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
gi|387846826|emb|CCH51396.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
Length = 482
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 50 WFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLE--------LVIFALED 100
WF+ DLR+ D+ G A + V+P++VF+ R+ + N + ++ ++ D
Sbjct: 8 WFRNDLRLHDNEGFARAVADADEVLPVFVFNPRLFAEVHNLGFKKTGIYRASFLLESVAD 67
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
LR+S++ +G +L+IR G N++ EL E +V+A +EV
Sbjct: 68 LRQSIRAKGGELIIRIGEPANILAELAESADVAAVYASKEV 108
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL-SRY-SNEMLELVIFALEDLR 102
+A++WF++DLR+ DH LV A + + VVP++V D I+ R+ S ++ L +L
Sbjct: 5 TAIVWFRRDLRLHDHPPLVRALAAHARVVPVFVLDPAIVRGRFASGARTAFMLDCLRELD 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSV-FAEEEVEY 143
L+E+GS L++R GR E + L E+ A +V +A + Y
Sbjct: 65 ADLRERGSGLVVREGRPERELPALAREIGAAAVHWASDATPY 106
>gi|123965634|ref|YP_001010715.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9515]
gi|123200000|gb|ABM71608.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
str. MIT 9515]
Length = 503
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR++D+ L+ + K + ++P+++ + I S+ YS+ + +L DLR SL
Sbjct: 6 ILWFKKDLRINDNEALIESLKDRDIIPIFIIEKEIWSQKTYSDRQWQFCKESLLDLRISL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
G L+IR G+V + ++ + ++++ +E +L
Sbjct: 66 ANIGQPLIIRTGKVIEIFDQISNNFEIKAIYSHQETGDYL 105
>gi|344211748|ref|YP_004796068.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
gi|343783103|gb|AEM57080.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
Length = 465
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP++VFD +L + ++ AL+ LR+ +++G
Sbjct: 5 WHRRDLRATDNAGLAAATPSDPVVPVFVFDRDVLDHAGPPRVAFMLDALDSLREWYRDRG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL++ G V+ +L E A V ++ R+ A V + L + +
Sbjct: 65 SDLVVAEGDPTAVLPDLAAEYGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNA 124
Query: 170 LWQTPFYDIKNLNDLPVSHNEF-RKLQ-RPLTSPILPPTLAGAKLEADWGPLPT-----F 222
+ P N D F RK R +P PP A + D LPT F
Sbjct: 125 VLHEPGEITTNDGDPYSVFTYFGRKWHDREKATPYEPPP-ADELADVDGDALPTLADLGF 183
Query: 223 DE----------------LKEFVNENPWKLEE 238
DE L +F+ EN ++ EE
Sbjct: 184 DEPEADVPAAGTDEARALLDDFLAENVYEYEE 215
>gi|345004881|ref|YP_004807734.1| deoxyribodipyrimidine photo-lyase [halophilic archaeon DL31]
gi|344320507|gb|AEN05361.1| Deoxyribodipyrimidine photo-lyase [halophilic archaeon DL31]
Length = 498
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++DLRV D+ GL AA++ V+P++VFD +L+ S+ + ++ AL LR+ +E
Sbjct: 3 LFWHRRDLRVSDNRGLAAAAEDGPVLPVFVFDDEVLTHGSDVRVRFMLDALAALREQYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV-----EYHLRQMMAIVDETLAKVSLV 162
+GSDL++ G V+ L A S+ E+ E R +A+ +A+ S
Sbjct: 63 RGSDLVVAQGDPATVLPALAAAADAESIHWNEDYSMLSRERDARVRLALERADVARESHH 122
Query: 163 DGK 165
DG+
Sbjct: 123 DGQ 125
>gi|349573536|ref|ZP_08885514.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
gi|348014842|gb|EGY53708.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
Length = 504
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY--SNEMLELVIFALED 100
+ + ++WF++DLR+DDH L+AA + + +V ++VFD RIL + L + L+D
Sbjct: 28 TATTLVWFRRDLRLDDHSALMAAVRAGRPLVGVFVFDRRILDPLPPDDRRLTFICQCLDD 87
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L L E G L G E V+ EL A V E+ E
Sbjct: 88 LAAQLAELGMPLHTVHGLPEEVLPELAARCGAAEVVCAEDYE 129
>gi|448639842|ref|ZP_21676990.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
gi|445762369|gb|EMA13590.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
Length = 465
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP+++FD +L + ++ AL+ LR+ +++G
Sbjct: 5 WHRRDLRATDNAGLAAATPSDPVVPVFIFDTAVLDHAGPPRVAFMLDALDSLREWYRDKG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL++ G +V+ EL + A V ++ R+ A V + L + +
Sbjct: 65 SDLVVAEGDPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNA 124
Query: 170 LWQTPFYDIKNLNDLPVSHNEF-RKLQ-RPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
+ P N D F RK R P PP+ A + D LPT +L
Sbjct: 125 VLHEPGEITTNDGDPYSVFTYFGRKWHDREKAGPYDPPS-ADTLADVDGDALPTLADL 181
>gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
blandensis MED217]
gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
blandensis MED217]
Length = 434
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALED 100
S + WF++DLR+DD++G + A K + V+P+++FD IL+ + + + L+
Sbjct: 2 STVNIFWFRRDLRLDDNVGFLEALKGEHPVLPIFIFDKEILNELPEDDARVTFIFETLQK 61
Query: 101 LRKSLKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+R L+E+ GS + + G+ E + ++L+E+ K +VF + E
Sbjct: 62 MRDELQEKHGSSIALYHGKSETIWKQLLEDYKVDTVFTNHDYE 104
>gi|358450917|ref|ZP_09161355.1| deoxyribodipyrimidine photo-lyase [Marinobacter manganoxydans
MnI7-9]
gi|357224893|gb|EHJ03420.1| deoxyribodipyrimidine photo-lyase [Marinobacter manganoxydans
MnI7-9]
Length = 505
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRI--LSRYSNEMLELVIFALEDLR 102
+ V+WFK+DLR DH LVAA+ + V+PLYV + L S + +L+DL
Sbjct: 2 TTVVWFKRDLRTRDHAPLVAAASLGEPVIPLYVIEDEYWQLPDTSGRQWAFIRDSLDDLD 61
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
+ L++ GS L++ G V + +++L VF +E H
Sbjct: 62 RQLRKAGSRLLVMRGSVIDTLKQLQARQDVKRVFCHQETGGH 103
>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
Length = 521
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 140/338 (41%), Gaps = 79/338 (23%)
Query: 46 SAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHR-ILSRYSNEM-------LELVIF 96
+ + + DLR D+ L A + +VPLY FD R + Y+ + L ++
Sbjct: 6 TIICLLRNDLRFQDNELFHWAQRNAEYIVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLLD 65
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVDET 155
++ DLR +L +GS+L++R G+ E V+ +L++++ + S A EEV + V +
Sbjct: 66 SIRDLRNTLLSKGSNLVVRQGKPEEVVADLIKQLGSVSAVAFHEEVTSEELNVEKGVKDV 125
Query: 156 LAKVSLVDGKPKICLWQT-------PFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLA 208
A++ + K C T PF+ I L D+ + +FRK T + P
Sbjct: 126 CAQMKV---KVHTCWGSTLYHRDDLPFHHISRLPDV---YTQFRKAVE--TQSRVRPV-- 175
Query: 209 GAKLEADWGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDKLSKLGKRSKRNL 267
PT ++LK P LEE + ++ LTD
Sbjct: 176 ----------FPTPEQLKPL----PSGLEEGAIPTAEDLQQTEPLTD------------- 208
Query: 268 NNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAE 327
PR S GG + VL L+ Y + + ++E + L
Sbjct: 209 -----PRSAFPCS-----------GGESQVLARLKHY--FWDTDAVATYKETRNGLI--- 247
Query: 328 SRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
G ++T F P L +G IS R ++++ ++EKER A
Sbjct: 248 ---GVDYSTKFAPWLAMGCISPRYIYHQIKQYEKERTA 282
>gi|348175729|ref|ZP_08882623.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora spinosa NRRL
18395]
Length = 453
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRK 103
+ + F +DLRV D+ L A++ VVPL+VFD +L + ++ L DLR+
Sbjct: 3 TTICLFTRDLRVHDNPVLRHAARADRVVPLFVFDETLLQLPFTRPNRIAFLLGCLRDLRR 62
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
SL E G L++R G + LV+EV AT V +V + R
Sbjct: 63 SLGEAGGGLVVRHGTPAIEVARLVDEVGATEVHVAADVSAYAR 105
>gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
Length = 458
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDL 101
+ ++WF+QDLR+ D L+AA+ VVP+YV D ++ + +L L
Sbjct: 2 TAPVLLWFRQDLRLSDQAALIAAASEGPVVPVYVLDDDTPRQWVMGGASRWWLHHSLASL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
++L+E+GS L +R G+ +V++ L +E A V A E R V + L + L
Sbjct: 62 DRALREKGSRLTLRRGKSADVLQALAKECGAGRVHALHHYEPWWRNAEKAVAKAL-DLCL 120
Query: 162 VDG 164
DG
Sbjct: 121 HDG 123
>gi|448476495|ref|ZP_21603581.1| DNA photolyase FAD-binding protein [Halorubrum aidingense JCM
13560]
gi|445815358|gb|EMA65283.1| DNA photolyase FAD-binding protein [Halorubrum aidingense JCM
13560]
Length = 461
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++D R D+ GL AA++ AVVP++V+D +L+ + ++ L++ +E
Sbjct: 3 LFWHRRDPRTRDNAGLAAAARSGAVVPVFVYDADLLATIGARQRAFFLRSVTRLKERYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139
GSDL++R G + V+ EL E A +VF E
Sbjct: 63 LGSDLIVRAGDPDAVLVELAVEHDAETVFYNE 94
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR+ DH L A + V+P+++ D R+L + +++ + + L L + L+++G
Sbjct: 7 WIRRDLRLHDHPALEYALQKGRVIPVFILDDRLLQKEASKRKQFLFSGLRQLDEDLRKRG 66
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ----------MMAIVDETLAKV 159
S L+IR G + L++E A + A E+ + R+ + ET+
Sbjct: 67 SQLIIRRGEPLAELTRLIQETGAEEIVALEDYSPYARRRDSHIARELPLHLFAGETVYPP 126
Query: 160 SLV---DGKPKICLWQTPF 175
SLV DG P TPF
Sbjct: 127 SLVLKPDGSPYTVF--TPF 143
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 137/333 (41%), Gaps = 81/333 (24%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF-------ALE 99
++W++ DLR+ DH L A K A ++P+Y D R S+ + +F ++
Sbjct: 7 ILWYRNDLRIHDHEPLYKALKVNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKFLLESIA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DLR +L++ GS+L+I + E VI L +++ A SVF +EV ++ +V + L ++
Sbjct: 67 DLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVHQALKQI 126
Query: 160 SLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKL--- 212
G W Y +L LP FRK +S + PT + K
Sbjct: 127 ----GVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSS--VNPTFSIPKKLSS 180
Query: 213 --EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQ 270
+ D G LPT +L LE+ ++++ +L K
Sbjct: 181 LPKIDVGELPTLSDL---------NLEKP-----PLNSQGVLEFK--------------- 211
Query: 271 HSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRD 330
GG A ++ Y + D+ ++ ++ RN
Sbjct: 212 ---------------------GGETAAKERVKNYF------WQQDYLKVYKETRNGML-- 242
Query: 331 GASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
GA++++ F P L LG +S R ++ E ++E +R
Sbjct: 243 GANYSSKFSPWLALGCLSPRYIYEEVKEYEYQR 275
>gi|448611990|ref|ZP_21662420.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
gi|445742751|gb|ELZ94245.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
Length = 486
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 136/344 (39%), Gaps = 93/344 (27%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR----------YSNEMLELVIF 96
+++WF++DLR+ D+ LV A VVP+Y FD + F
Sbjct: 6 SLVWFRRDLRLHDNEALVEACAADRVVPVYCFDPGDYGTRPFGGDDSFDFEKTGAHRARF 65
Query: 97 ALE---DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
LE DLR SL+++ SDL++R GR E+VI ++ V A SV Q+ A V
Sbjct: 66 RLESVADLRSSLRDRDSDLLVRVGRPESVIPDVAAAVDAASVTMHTWPTAEEMQVEAAVK 125
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNE-------FRK-------LQRPLT 199
+ P+ T + +L+DLP+++++ FR ++ PL
Sbjct: 126 REHRDADI---DPRRFWGHT----LTHLDDLPMAYDDVPDTYTTFRNAVERDATVREPLH 178
Query: 200 SPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKL 259
P +P A A D G +P+ +L ET+ T +
Sbjct: 179 IPEIPAFPADAP---DPGSIPSIADLD----------------------ETLTTPRFDDR 213
Query: 260 GKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQEL 319
G R D GG A L+ +++Y+ EG +++E
Sbjct: 214 GV-------------LRFD-------------GGETAALDRVESYI--WEGDHLREYKET 245
Query: 320 QEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
+ ++ GA +++ F P L G +S R V E ++E R
Sbjct: 246 RNRML------GADYSSKFSPWLNEGCLSPRYVQSEVERYEDVR 283
>gi|395493322|ref|ZP_10424901.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26617]
Length = 456
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDLRKSL 105
++W ++DLR+ D L+AA V+P+Y+ D +Y+ + +LE L L
Sbjct: 5 ILWLRRDLRLADQPALLAAINDGPVIPVYILDDDTPEKYAMGGASRWWLHHSLEGLDSDL 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVF-----------AEEEVEYHLRQMMAIVDE 154
+E+GS L++R G+ V+ +L EE AT V AEE V HL + +
Sbjct: 65 REKGSRLILRRGKCVEVLAQLAEETGATQVHCIRHFEPWWRKAEEAVAKHLDLVCHDGNY 124
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEA 214
S+ G TPF+ + P + + +P P P + + A
Sbjct: 125 LARPGSITTGSGGQYKIYTPFWRALKQHMPPPA-----PIHKPAKIPA-PSKWPKSDVLA 178
Query: 215 DWGPLPT 221
DW LPT
Sbjct: 179 DWTLLPT 185
>gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
Length = 435
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALEDLRKS 104
+ WF++DLR+DD+ GL AA + V+P+++FDH IL + + + + L+++R +
Sbjct: 7 IFWFRRDLRLDDNAGLKAALQGDLPVLPIFIFDHEILEKLPEDDARVTFIFEELQEMRST 66
Query: 105 LKE-QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
L+E GS + I + E V + L+ + + VF + E + ++ D+ +AK+
Sbjct: 67 LQEDHGSSIAIFYRTPEKVFKNLISDYEIEKVFTNRDYEPYAKER----DQKIAKI 118
>gi|448474041|ref|ZP_21602009.1| deoxyribodipyrimidine photolyase [Halorubrum aidingense JCM 13560]
gi|445818321|gb|EMA68180.1| deoxyribodipyrimidine photolyase [Halorubrum aidingense JCM 13560]
Length = 504
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ--AVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ W ++DLR D++GL AA++ VVP++VFD +L+ S+ + ++ + LR
Sbjct: 3 LFWHRRDLRTADNVGLAAAAERADGGVVPVFVFDDNVLAHASDVRVRRLLDGVAALRDDY 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+++GSDL++ G E V+ EL + + A V
Sbjct: 63 RDRGSDLLVARGDPETVLPELADALDADRV 92
>gi|339327951|ref|YP_004687643.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
gi|338170552|gb|AEI81605.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
Length = 511
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 32 VSPTAAATSKGRS--------GSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRI 82
+SP + GR ++WF++DLR DDH L A K+ + V ++VFD I
Sbjct: 5 LSPASETAGTGRMPYRIDREFARGLVWFRRDLRADDHAALHYALKHCRQVWCVFVFDREI 64
Query: 83 L------SRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L R + +E ++ +LE LR++L + G L++ + I L E+ A +VF
Sbjct: 65 LDPLIARGRKVDRRVEFILRSLEPLRRTLTDAGGGLIVLDDTARDAIPRLAAELDAEAVF 124
Query: 137 AEEEVEYHLRQMMAIVDETLA 157
+ E ++ V + LA
Sbjct: 125 TNHDYEPAAKRRDTAVSQALA 145
>gi|379731644|ref|YP_005323840.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
gi|378577255|gb|AFC26256.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
Length = 445
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
++ W ++DLR++D+ L A K V+ +++FD IL +N V F L+ L+
Sbjct: 4 SIFWHRRDLRLNDNAALYQALKAGGPVLSIFIFDQNILEDLNNRQDARVDFIHQELQRLQ 63
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
K L+E GSDL++ +GR + V +L+++ V+ + E + ++ A + E L K ++
Sbjct: 64 KELRELGSDLLVLYGRPQAVWTQLLQDWSIEKVYTNRDYEPYAKKRDAAIAELLQKENI 122
>gi|222478726|ref|YP_002564963.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
gi|222451628|gb|ACM55893.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
Length = 465
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++D R D++GL AA++ VVP++V+D + + ++ L++ +E
Sbjct: 3 LFWHRRDPRTRDNVGLAAAARTGTVVPVFVYDTDLFGTMGARQRAFFLRHVKRLKERYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139
GSDL++R G E V+ +L +E A +VF E
Sbjct: 63 FGSDLVVRAGDPEKVLVDLADEYDAEAVFYNE 94
>gi|346995077|ref|ZP_08863149.1| deoxyribodipyrimidine photo-lyase [Ruegeria sp. TW15]
Length = 504
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
V+WFK+DLR++DH + AS+ V+PLYV + + + S + V + LRK L
Sbjct: 3 VVWFKRDLRINDHPAIAQASEVGPVLPLYVVEPELWQQGDASKRQWDFVAETIAGLRKEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L++R G++ +V+ EL + +++ EE
Sbjct: 63 GKLGQPLVVRTGQIVSVLSELKDRGLIDVLWSHEET 98
>gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 561
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 37/221 (16%)
Query: 44 SGSAVIWFK-QDLRVDDHLGLVAASKYQA-------VVPLYVFDHRILS-------RYSN 88
S ++WF+ DLR+ D+L + AAS A V+P++ FD R + +
Sbjct: 8 SARVLLWFRGTDLRLRDNLVVDAASALVASGSGDVDVLPVFCFDPRTFAASAWGTPKTGG 67
Query: 89 EMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQM 148
++ ++ DL++SL++ GSDL++ G+ E+VI + E V +EEV R++
Sbjct: 68 RRARFLLESVLDLKRSLRDVGSDLLVAVGKPEDVIPRYLLEGGTNVVLTQEEVHQEERRV 127
Query: 149 MAIVDETLAKVSLVDGKPKI-CLWQTPFYDIKNL------NDLPVSHNEFRK-------L 194
A + + V + + K + +W + Y + ++ +D+P FR +
Sbjct: 128 DAAI---ASAVKIANPKNAMRTVWNSTMYHVDDIPFNADASDVPNGFTPFRNKVESKATV 184
Query: 195 QRPLTSPILPPTLAGAKLEADWGPL---PTFDELKEFVNEN 232
+ P SP P L AK D L P+ D+L F E+
Sbjct: 185 RAPAPSP-KPGALPLAKASIDASVLEYEPSLDDLP-FATED 223
>gi|448402770|ref|ZP_21572126.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
gi|445664862|gb|ELZ17552.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
Length = 465
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR +D+ GL A+ VVPL+V D +L S + ++ AL+DLR +E
Sbjct: 3 VHWHRRDLRPNDNRGLARAAGDGPVVPLFVLDPTVLEYASPIRVACLLEALDDLRAWYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
+GS+L++ G V+ E+ E A V E+
Sbjct: 63 RGSELLVVRGEASAVVPEVAAEYDAARVVWNED 95
>gi|332293614|ref|YP_004432223.1| deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
Length = 465
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 24 SRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRI 82
+R K + + AT+ + + WF++DLR+DD++G + A K V+P+++FD I
Sbjct: 13 TRLKDAISIFELSYATTMSSNKVNIFWFRRDLRLDDNVGFLEALKGDLPVLPIFIFDKEI 72
Query: 83 LSRYSNE--MLELVIFALEDLRKSLK-EQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139
L + + + + L+ +R +L+ E S L + + E V ++L ++ + +VF
Sbjct: 73 LDKLPKDDARVTFIFETLQKMRSTLQDEHASSLAMYYDTPEKVFKQLSKDFEIATVFTNR 132
Query: 140 EVEYHLRQMMAIVDETL 156
+ E + ++ ++ L
Sbjct: 133 DYEPYAKERDEVISSLL 149
>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
Length = 513
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 32 VSPTAAATSKGR--------SGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRI 82
+SP + GR ++WF++DLR DDH L A K+ + V ++VFD I
Sbjct: 5 LSPASETAGTGRLPYRIDLEFARGLVWFRRDLRADDHAALHYALKHCRQVWCVFVFDREI 64
Query: 83 L------SRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L R + +E ++ +LE LR++L + G L++ + I L E+ A +VF
Sbjct: 65 LDPLIARGRKVDRRVEFILRSLEPLRRTLTDAGGGLIVLDDIARDAIPRLAAELDADAVF 124
Query: 137 AEEEVEYHLRQMMAIVDETLAKVSLV 162
+ E ++ V + LA S V
Sbjct: 125 TNHDYEPAAKRRDTAVRQALASDSRV 150
>gi|449016857|dbj|BAM80259.1| probable cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 669
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 26/230 (11%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL---SRYSN--EMLELVIFALE 99
G+A++WF+ DLR+ D+ L A++ ++++ +YVFD R SR+ + E + L
Sbjct: 103 GTALLWFRNDLRLHDNEALRLANRAESLLCVYVFDERYFFGKSRFGGFLRIGEHRAYFLR 162
Query: 100 ----DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS-VFAEEEVEYHLRQMMAIVDE 154
DLR++L+ +G +L++ G +VI LV++ +F++E E + A+V
Sbjct: 163 ECIVDLRQALRSRGQELIVEIGSPVDVIPRLVQKFGVQHLIFSKEVTEEEIATENALV-R 221
Query: 155 TLAKVSLVD--GKPKIC--LWQTPFYDIKNLNDLPVSH-NEFRKLQRPLTSPILPPTLAG 209
TLA+V+ P C +W + ++ DLP + + + R SP+ P G
Sbjct: 222 TLAQVAAQGQISAPVQCHAVWNA---TLVHIEDLPYPFPGKAKDISRRAESPV--PKTRG 276
Query: 210 AKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKL 259
P TF + V E W + E+W + T+L D S
Sbjct: 277 TPAVDRVFP-DTFTTFRRLV-ERSWTVRETWQCPEVL---TLLPDDASNF 321
>gi|86137240|ref|ZP_01055818.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
gi|85826564|gb|EAQ46761.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
Length = 502
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
V+WFK+DLR DH L A++ V+PLYV + + + S+ V L +LR L
Sbjct: 3 VVWFKRDLRCSDHAALTRAAQVGPVLPLYVVEPDLWQQPDASHRQWCFVAETLAELRDDL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
K +G L++R G V ++ L+ + + +++++ EE
Sbjct: 63 KLRGQPLVVRQGSVVEILEGLMRQGRLSALWSHEE 97
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRIL--SRYSNEMLELVIFALEDLRK 103
+ WF++DLR+ D+ L A+ V+PL++ D IL R + +I AL DL
Sbjct: 4 IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDA 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
SL+ +GS L++R GR +V+R+LV A V
Sbjct: 64 SLRARGSRLVVRRGRPSDVLRDLVGATGAVGV 95
>gi|448659248|ref|ZP_21683216.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
gi|445760750|gb|EMA12007.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
Length = 465
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP+++FD +L + ++ AL+ LR+ +++G
Sbjct: 5 WHRRDLRATDNAGLAAATPSDPVVPVFIFDTAVLDHAGPPRVAFMLDALDSLREWYRDKG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSV 135
SDL++ G +V+ EL + A V
Sbjct: 65 SDLVVAEGDPTSVLPELAAQHGAEKV 90
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR---YSNEMLELVIFALEDLRK 103
++W ++DLR+ DH L A+K+ ++P+++ D IL R +S + ++ +LE L
Sbjct: 5 IVWHRRDLRIFDHSALAEAAKFADEIIPIFILDDDILLRREDFSPACVGFMLESLEALAL 64
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
S G L++R G+V V++ LV E +A +++ E+ E
Sbjct: 65 SYANIGGKLIVRRGQVLEVLKSLVGETRAQAIYFNEDYE 103
>gi|381185982|ref|ZP_09893558.1| deoxyribodipyrimidine photo-lyase [Flavobacterium frigoris PS1]
gi|379652014|gb|EIA10573.1| deoxyribodipyrimidine photo-lyase [Flavobacterium frigoris PS1]
Length = 431
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 49 IWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKS 104
WF++DLR+DD++GL A S Y V+PL+VFD IL ++ + + +L ++
Sbjct: 9 FWFRRDLRLDDNVGLFQALQSNY-PVIPLFVFDDLILDSLPKNDSRVSFIYDSLSEINDK 67
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
L E GS L+++ G+ V L+EE VF ++ E + + ++ E L
Sbjct: 68 LHEIGSSLLVKKGKTAAVWESLIEEYDVKEVFFNKDYEPYAIERDTVICELL 119
>gi|123967930|ref|YP_001008788.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str.
AS9601]
gi|123198040|gb|ABM69681.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
str. AS9601]
Length = 498
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR+ D+ L A K ++P+Y+ + I S+ +S+ + +L DLR +L
Sbjct: 6 ILWFKKDLRIFDNEALCEAIKDNDILPIYIIELDIWSQNTHSDRQWQFCKESLIDLRNAL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
E G L+IR G V N+ + + K +++ +E
Sbjct: 66 AEIGQPLIIRTGNVINIFDAISSKFKIKGIYSHQET 101
>gi|337754405|ref|YP_004646916.1| deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
gi|336446010|gb|AEI35316.1| Deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
Length = 499
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
V+WFK+DLR+DD+L L A+ V+P+Y+ + + + S+ ++ LEDL L
Sbjct: 3 VVWFKRDLRIDDNLALTQAATKGDVLPIYIIEPELWQQPDMSHRQYLFLLECLEDLNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L+I G V +L+++ SV++ +E
Sbjct: 63 TRLGQPLIIMVGNAVEVFEQLIQKYHIKSVWSHQET 98
>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 471
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
A++WF+QDLR+ D+ + A S ++ V+PLY++D + S + ++L L KSL
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKC-SVLGQAQAWWLHYSLIALGKSL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+QG L++R G + +I ELV + SV+
Sbjct: 63 NQQGLSLVLRKGSPQEIILELVAQYGVESVY 93
>gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum
borinquense DSM 11551]
gi|448286034|ref|ZP_21477270.1| deoxyribodipyrimidine photolyase [Halogeometricum borinquense DSM
11551]
gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum
borinquense DSM 11551]
gi|445575333|gb|ELY29809.1| deoxyribodipyrimidine photolyase [Halogeometricum borinquense DSM
11551]
Length = 469
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 3/178 (1%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GLV A+ VVP++VFD +L+ + ++ AL LR++ +E+
Sbjct: 5 WHRRDLRVSDNHGLVTAADAGDVVPVFVFDDDVLAHAGAARVRFMLDALARLRETYRERD 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL++ G + L E A V ++ R V L + +
Sbjct: 65 SDLVVVRGDPTEELPRLAAEYDADGVVWNKDYSRLARTRDEAVRRALDEAGVAHDAVHDA 124
Query: 170 LWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
+ P N D + F K R P PP A + + LPT +EL
Sbjct: 125 IHHEPGSITTNAGDPYSVYTYFWKKWRNRNKADPFSPPE-ADSLADVSGADLPTIEEL 181
>gi|93004444|gb|ABD93508.3| DNA photolyase protein [Petunia axillaris subsp. parodii]
Length = 181
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 15/140 (10%)
Query: 65 AASKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDLRKSLKEQGSDLMIRFG 117
A ++ ++V+P+Y FD R + S+ +I ++ DLRK+L+ +GSDL++R G
Sbjct: 8 AHNESKSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLRKNLQARGSDLVVRIG 67
Query: 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD 177
+ E V+ EL + V A +V+A EV Y + ++ + V +G W + Y
Sbjct: 68 KPETVLVELAKAVGAEAVYAHREVSYDEVKG----EDKIESVMKDEGVEVKFFWGSTLYH 123
Query: 178 IKN----LNDLPVSHNEFRK 193
+ + L ++P ++ FR+
Sbjct: 124 VDDLPFKLEEMPTNYGGFRE 143
>gi|378776172|ref|YP_005184602.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364506979|gb|AEW50503.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 472
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
A++WF+QDLR+ D+ + A S ++ V+PLY++D + S + ++L L KSL
Sbjct: 5 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKC-SVLGQAQAWWLHYSLIALGKSL 63
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+QG L++R G + +I ELV + SV+
Sbjct: 64 NQQGLSLVLRKGSPQEIILELVAQYGVESVY 94
>gi|443320872|ref|ZP_21049947.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
gi|442789415|gb|ELR99073.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
Length = 485
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIF-------A 97
+ +IW++ DLR++DH + A S+ V+P+Y FD R +++ F +
Sbjct: 3 TILIWYRNDLRLEDHEPMYQALSQKAQVIPVYCFDPRQFGTTGCGLVKTGSFRAQFLRES 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ DLR +L++ GS+L++R G E +I L + +V+ +EV + +A+ ET
Sbjct: 63 VIDLRHNLQQLGSNLILRQGLPEVIIPALARSIAVDAVYFHQEV---TAEELAV--ETAL 117
Query: 158 KVSLVDGKPKI-CLWQTPFYDIKNL----NDLPVSHNEFRK--LQRPLTSPILP-PTLAG 209
K +L + + W Y + NL LP FRK ++ P LP P
Sbjct: 118 KKALAQSQITVQSFWGATLYHLDNLPFAPAQLPELFTNFRKEVERKAEIEPSLPQPERLP 177
Query: 210 AKLEADWGPLPTFDEL 225
+ D G +P E+
Sbjct: 178 PLPDIDPGEIPELAEI 193
>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
Length = 440
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+AV+ F +DLRV DH L AA S + VVPLYV D L + S + +L DLR++
Sbjct: 5 TAVVLFTRDLRVHDHPALAAACSAFDRVVPLYVLDP-ALQKLSPNRTRFLHQSLADLREA 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L+++G DL+IR G +L +V A V +V
Sbjct: 64 LRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADV 100
>gi|433460771|ref|ZP_20418395.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432191119|gb|ELK48100.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 497
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
V+WFK+DLR+ DH L A V+PLYV + I S + V +L DL+K
Sbjct: 4 VVWFKRDLRLHDHAPLYNAVQSGDMVLPLYVAEPSIWQGQELSARHYQFVKESLHDLQKE 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
LK++G L + G +E V+ E+ E S+ A EE
Sbjct: 64 LKQRGGRLFVAVGEMETVLEEIYETYGPFSLHAHEE 99
>gi|424843384|ref|ZP_18268009.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
gi|395321582|gb|EJF54503.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
Length = 445
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
++ W ++DLR++D+ L A K V+ +++FD IL +N V F L+ L+
Sbjct: 4 SIFWHRRDLRLNDNAALYQALKAGGPVLSIFIFDQNILEDLNNRQDARVSFIHQELQRLQ 63
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
K L+E GSDL++ +GR + V +L+++ V+ + E + ++ A V E L K ++
Sbjct: 64 KELQELGSDLLVLYGRPKAVWTQLLQDWPINKVYTNRDDEPYAKKRDAAVAELLQKENI 122
>gi|254449817|ref|ZP_05063254.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
arcticus 238]
gi|198264223|gb|EDY88493.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
arcticus 238]
Length = 522
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
++WFK+DLR++DH L+AAS+ A ++PLY+ + + S + L DL
Sbjct: 18 IVWFKRDLRINDHAPLLAASRTNAPIIPLYIVEPEYWQQPFASRRHWHFIHDGLCDLDSG 77
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L E G L+++ G +VI++L + + V+A EE
Sbjct: 78 LAELGQHLVVKVGDSCDVIKQLHLDHDVSHVYAHEET 114
>gi|433602405|ref|YP_007034774.1| Deoxyribodipyrimidine photo-lyase [Saccharothrix espanaensis DSM
44229]
gi|407880258|emb|CCH27901.1| Deoxyribodipyrimidine photo-lyase [Saccharothrix espanaensis DSM
44229]
Length = 455
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 28 CVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRY 86
V C S A G S V+WF++DLRVDDH L+AA+ + + + LYV D R+LS
Sbjct: 20 VVQCAS--GAPRVPGVDSSTVVWFRRDLRVDDHPALLAAAERAKNGLALYVLDPRLLSVA 77
Query: 87 SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
+ + L L L G LM+ G +V+ E+ V A++V + + R
Sbjct: 78 GQPRVRFMFRCLRALDAKL---GGRLMVVSGDPVDVVPEVARSVGASTVHVSADAGPYGR 134
Query: 147 QMMAIVDETLAKVSLV 162
+ A V+ KV LV
Sbjct: 135 ERDAAVER---KVELV 147
>gi|348503387|ref|XP_003439246.1| PREDICTED: cryptochrome DASH-like [Oreochromis niloticus]
Length = 521
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 137/338 (40%), Gaps = 75/338 (22%)
Query: 44 SGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFD--HRI------LSRYSNEMLELV 94
S + + + DLR+ D+ L A + +VPLY FD H + L + L +
Sbjct: 4 SRTVICLLRNDLRLHDNELFHWAQRNAEHIVPLYCFDPTHYVGTYNYSLPKTGPFRLRFL 63
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVD 153
+ + DLR +L +GS+L++R G+ E V+ +L+ ++ + S A EEV + V
Sbjct: 64 LEGIRDLRNTLINKGSNLVVRRGKPEEVVADLIRQLGSVSSVAFHEEVTSEELNVEKRVK 123
Query: 154 ETLAKVSLVDGKPKICLWQTPFYD-----IKNLNDLPVSHNEFRKLQRPLTSPILPPTLA 208
+ A++ + K C W + Y +++ LP + +FRK
Sbjct: 124 DVCAQMKV---KVHTC-WGSTLYHRDDLPFPHMSRLPDVYTQFRK--------------- 164
Query: 209 GAKLEADWGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDKLSKLGKRSKRNL 267
+E++ P F E +N P LEE + ++ +TD S
Sbjct: 165 --AVESEGRVRPVF-STPEKLNPLPPGLEEGAIPTAEDLQQTEPVTDPRSAF-------- 213
Query: 268 NNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAE 327
GGG + L L+ Y + + ++E + L
Sbjct: 214 ---------------------PCGGGESQALARLKHY--FWDTDAVATYKETRNGLI--- 247
Query: 328 SRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
G ++T F P L +G IS R ++++ ++EKER A
Sbjct: 248 ---GVDYSTKFSPWLAMGCISPRYIYHQIKQYEKERTA 282
>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
Length = 440
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+AV+ F +DLRV DH L AA S + VVPLYV D L + S + +L DLR++
Sbjct: 5 TAVVLFTRDLRVHDHPALAAACSAFDRVVPLYVLDP-ALQKLSPNRTRFLHQSLADLREA 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L+++G DL+IR G +L +V A V +V
Sbjct: 64 LRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADV 100
>gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 522
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEML----ELVIFALEDLR 102
+++WFK+DLRV DH L AS+ V+PLY+ + +L SN++ + +L DL
Sbjct: 7 SIVWFKRDLRVHDHRPLFEASRLGPVLPLYIVEPILLD--SNDIAPCHGSFINDSLRDLD 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
SL++ G+ L++ G V + L++ + +F+ EE
Sbjct: 65 TSLRKLGTALVVHEGTATEVFQSLLKSIGPFRLFSHEET 103
>gi|410909117|ref|XP_003968037.1| PREDICTED: cryptochrome DASH-like [Takifugu rubripes]
Length = 521
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 133/339 (39%), Gaps = 81/339 (23%)
Query: 46 SAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFD--------HRILSRYSNEMLELVIF 96
+ + + DLR+ D+ L A +VPLY FD H L + L ++
Sbjct: 6 TVICLLRNDLRLFDNELFHWAQRNADHIVPLYCFDPRHYMGTYHYNLPKTGPFRLRFLLE 65
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVDET 155
+++DLR +L +GS+L++R G+ E V+ L++++ + S A EEV + V +
Sbjct: 66 SIKDLRNTLLNKGSNLIVRRGKPEEVVASLIKQLGSVSTVAFHEEVTSEELDVEKRVKDV 125
Query: 156 LAKVSLVDGKPKICLWQT-------PFYDIKNLNDLPVSHNEFRKL--QRPLTSPILPPT 206
A++ + C T PF+ I L D+ + +FRK + P+ PP
Sbjct: 126 CAQMKV---NVHTCWGSTLYHRDDLPFHHISRLPDV---YTQFRKAVESQCRVRPVFPPP 179
Query: 207 LAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRN 266
E + P LEE TILT + +
Sbjct: 180 --------------------EHLKPLPQGLEEG----------TILTAEDLE-------- 201
Query: 267 LNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNA 326
Q P +F GG + L L+ Y + + ++ RN
Sbjct: 202 ---QKEPVADPRSAF-------PCSGGESQALARLKHYFWDTDAVA------VYKETRNG 245
Query: 327 ESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
G ++T F P L LG IS R ++++ ++E ER A
Sbjct: 246 LI--GVDYSTKFSPWLALGCISPRYIYHQIKQYESERTA 282
>gi|257388282|ref|YP_003178055.1| DASH family cryptochrome [Halomicrobium mukohataei DSM 12286]
gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
Length = 483
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 124/327 (37%), Gaps = 58/327 (17%)
Query: 46 SAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFA 97
+ ++WF++DLR D+ L A ++ VVPLY R+ L R + +I +
Sbjct: 3 TVLVWFRRDLRCHDNATLRRAVAEADTVVPLYCLPDRLTGEGMFGLDRVGPHRAQFLIES 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L DLR+SL+++ +L +R G V+ E EE A +V+ + R V LA
Sbjct: 63 LADLRESLRDRDGELYVRSGDPGTVVPEAAEEFDADAVYWQALPGPEERDEAGSVRAGLA 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWG 217
G W Y + +DLP PP ++E +
Sbjct: 123 DA----GIDSETFWTHTLY---HRDDLP-----------------RPPD----EIEDTFT 154
Query: 218 PLPTFDELKEFVNENPWKLEESWTLINNMSAE-TILTDKLSKLGKRSKRNLNNQHSPRKR 276
P E K V P K W N + D L L R
Sbjct: 155 PWKDRTEAKATV--RPPKPAPEWVHAPNGGRRASSGADDLPTLADFGFGEDEATVDDRGV 212
Query: 277 LDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFAT 336
LD + GG A L+ + Y+ RD +E +E RN GA +++
Sbjct: 213 LDWT-----------GGETAGLDRVATYV-----WERDCLREYRET-RNGLV--GADYSS 253
Query: 337 LFGPALCLGIISRRGVHYEAIKFEKER 363
F P L G +S R +H E ++E +R
Sbjct: 254 KFSPWLSFGCLSPRQIHREVEQYETDR 280
>gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
Broad-1]
gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
Broad-1]
Length = 446
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
++++WF++DLR+ DH L AA+ VVPL+V D R+ S E ++ +L LR
Sbjct: 3 TSLMWFRRDLRLGDHPALQAAAAEGQVVPLFVLDPRLAG--SGRRWERLLASLAALR--- 57
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+E L+IR G V+ ++ E A+ V E + R+ A V++ LA +
Sbjct: 58 EETDGALVIRQGDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVEQRLAAAGI 113
>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
Length = 471
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHR--ILSRYSNEMLELVIFALEDLRK 103
A++WF+QDLR+ D+ + A S ++ V+PLY++D + +L + L + AL K
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCSVLGQAQAWWLHHSLIALG---K 60
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
SL +QG L++R G + +I ELV + SV+
Sbjct: 61 SLNQQGLSLVLRKGSPQEIILELVSQYGVESVY 93
>gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 479
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
++W ++DLR+ D+ L AA + VVP++VFD ++L R + + ++ AL++L++
Sbjct: 6 LLWHRRDLRLGDNTALHGAAQRSPQVVPVFVFDPQLLQRADMAPARVAFLLQALQELQER 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG 164
+ G L+ R G +R+L E+ A +VF E+++ RQ + V +LA+ +
Sbjct: 66 YAQMGIPLLWRRGDPAVELRQLAAELGAQAVFWNEDLDPWARQQESRVRASLAEAGIPSF 125
Query: 165 KPKICLWQTPFYDIKNLNDLPVSHNEFRK----LQRPLTSPILPPTLAGAKLEADWGPLP 220
+ L P + + F + L +P PI A + L+A PLP
Sbjct: 126 SYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWSSLPKPDPFPIPKSLQAVSSLKAQ--PLP 183
Query: 221 TFDELKEFVNE 231
+ +L N+
Sbjct: 184 SLADLGFVCNQ 194
>gi|345867351|ref|ZP_08819365.1| DNA photolyase family protein [Bizionia argentinensis JUB59]
gi|344048281|gb|EGV43891.1| DNA photolyase family protein [Bizionia argentinensis JUB59]
Length = 434
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALEDLRKS 104
+ WF++DLR+DD+ G A K + V+P+++FD IL + + + L+D+RK+
Sbjct: 7 IFWFRRDLRLDDNRGFYEALKSEYPVLPIFIFDSEILDSLPEDDARVTFIYDTLQDMRKT 66
Query: 105 LK-EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
L+ E GS + + G + V +EL +VF + E + Q A + +T K + VD
Sbjct: 67 LQDEYGSSIAMYNGTPKKVFKELAATYAIDTVFTNHDYEPYATQRDAEI-QTFLKNTCVD 125
Query: 164 GK 165
K
Sbjct: 126 FK 127
>gi|340619934|ref|YP_004738387.1| deoxyribodipyrimidine photo-lyase [Zobellia galactanivorans]
gi|339734731|emb|CAZ98108.1| Deoxyribodipyrimidine photo-lyase [Zobellia galactanivorans]
Length = 436
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++ WF++DLR+DD+LG A K AV+P+++FD IL + + + L+ +R
Sbjct: 6 SIFWFRRDLRLDDNLGFFEALKGNHAVMPIFIFDKEILENLPKDDARVTFIFERLQAMRD 65
Query: 104 SLKEQG-SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+L++ S + + +G E+V + L+E +V+ + E + ++ V E LA
Sbjct: 66 TLQDDNHSSIALYYGTAESVFKNLLETYTIDAVYTNHDYEPYAQKRDQAVKELLA 120
>gi|254525619|ref|ZP_05137671.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9202]
gi|221537043|gb|EEE39496.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9202]
Length = 497
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR+D++ L + K ++P+++F+ + ++ +S + ++ DLR SL
Sbjct: 6 ILWFKKDLRIDENEALNESLKDNDILPIFIFEIEVWNQKTHSRRQWQFCKESIIDLRNSL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
KE G L+IR G V + E+ + +++ +E
Sbjct: 66 KEIGQPLIIRTGNVIKIFEEISSKFNIVGIYSHQET 101
>gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
Length = 435
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 48 VIWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILSRYSNE--MLELVIFALEDLRK 103
V WF++DLR+DD+LG A KY V+P+++FD IL+ + + + L+ +R
Sbjct: 7 VFWFRRDLRLDDNLGFFKALHGKY-PVLPIFIFDSEILNELPKDDARVTFIFNTLQKMRD 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+E+GS L + G+ ++ ++L+++ +V + E
Sbjct: 66 ALQEKGSSLAMYQGKPLDIYKQLIKDFDVQNVITNHDYE 104
>gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis]
Length = 512
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 136/342 (39%), Gaps = 78/342 (22%)
Query: 44 SGSA-VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRIL--------SRYSNEMLEL 93
+G+A WF+ DLR+DD L A +++P+YVFD + S
Sbjct: 6 AGTARAFWFRTDLRLDDQPALSTACEDALSLLPIYVFDPAKFIDLTLAGARKSSARRARF 65
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
+I +L +LR+ L+++GS L + G VI +L A++++ + + Q A V+
Sbjct: 66 LIESLVNLRRRLEDRGSGLAVAIGDPAVVIADLC--ASASAIYVTQGICSEETQDEARVE 123
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIK----NLNDLPVSHNEFR-------KLQRPLTSPI 202
+ +L+ +W Y N P+ + F+ K++ PL
Sbjct: 124 SKMKAPALLSR-----VWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREPLAELT 178
Query: 203 LPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKR 262
P+L GA E D +S L++LG
Sbjct: 179 KLPSLPGAVCEPD------------------------------LSQALRFMPTLAELGFE 208
Query: 263 SKR-NLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQE 321
S+ N PR L S GG +A L LQ ++ + + +R+ W
Sbjct: 209 SEEINAAEFDDPRGVLPFS-----------GGEDAALTRLQKWI-WDDDHLREYWM---- 252
Query: 322 KLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
+RN +G +++ F P L LG +S R V E ++EKER
Sbjct: 253 -IRNGMKGEG--YSSKFSPWLALGCLSPRRVWKEVQRYEKER 291
>gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
Length = 434
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++ WF++DLR+DD++G + A K V+PL++FD IL + ++ + + L+++RK
Sbjct: 6 SIFWFRRDLRLDDNVGFLEALKGDYPVLPLFIFDKDILDKLPENDARVTFIFETLQEMRK 65
Query: 104 SLKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L++ S L + E V + LV++ + VF + E + ++ + E L+K ++
Sbjct: 66 ELQDDYDSSLAMFHDTPEKVFKSLVKDYQIQEVFTNRDYEPYAKERDTSIKELLSKNNI 124
>gi|384248698|gb|EIE22181.1| cryptochrome [Coccomyxa subellipsoidea C-169]
Length = 566
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 131/327 (40%), Gaps = 56/327 (17%)
Query: 48 VIWFKQDLRVDD----HLGLVAASKYQA--VVPLYVFDHR--ILSRYSN-----EMLELV 94
V+WF+ DLR+ D H K QA VVPLY FD R I + + N +
Sbjct: 7 VLWFRNDLRLTDNAIVHQAAQLIQKKQASEVVPLYCFDPRQYIATPWGNPKTGAHHASFL 66
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
+ ++ DL++ L++ GSDL+I G+ E I+ L E + +V A+ EV + VDE
Sbjct: 67 LQSVLDLKQRLRDIGSDLVIHMGKPEEAIQGLCREGQQLTVLAQMEVT----KEELDVDE 122
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHN--EFRKLQRPLTSPILPPTLAGAKL 212
+ G+ ++ LW Y + +DLP + E + P + A L
Sbjct: 123 GVRAALGSRGRLQL-LWGNTLY---HKDDLPFRSDMSELPDVFTPFKQKVEARCEVRAPL 178
Query: 213 EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHS 272
P P L + +P +L + + +++A ++ + +L +
Sbjct: 179 -----PAPKEGALPLAADLDPARLSRKPSCVEDLNA--VVPEGAPRLASLPRH------- 224
Query: 273 PRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGA 332
+ GG A L L+ YL + G + + L GA
Sbjct: 225 -----------PNAAIAFEGGETAALRRLKHYL-WDTGCISTYFDTRNGML-------GA 265
Query: 333 SFATLFGPALCLGIISRRGVHYEAIKF 359
++T F P L G IS + +EA F
Sbjct: 266 DYSTKFSPWLARGCISPSTIFHEARAF 292
>gi|448677847|ref|ZP_21689037.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
gi|445773522|gb|EMA24555.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
Length = 465
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 3/178 (1%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP++VFD +L + ++ AL+ LR+ +++G
Sbjct: 5 WHRRDLRATDNAGLAAATPSDPVVPVFVFDKAVLDHAGPPRVAFMLDALDSLREWYRDRG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL+I G +V+ L E V ++ R+ A V + L + +
Sbjct: 65 SDLVITEGDPTSVLPALAAEYGTEKVTWGKDYSGLARERDAAVRQALDDEDVAREAVQNA 124
Query: 170 LWQTPFYDIKNLNDLPVSHNEF-RKLQ-RPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
+ P N D F RK R +P PP+ + D P+PT +L
Sbjct: 125 VLHEPGEITTNDGDPYSVFTYFGRKWHDREKEAPYDPPS-TDELADVDGDPIPTLADL 181
>gi|377574583|ref|ZP_09803608.1| deoxyribodipyrimidine photo-lyase [Mobilicoccus pelagius NBRC
104925]
gi|377536740|dbj|GAB48773.1| deoxyribodipyrimidine photo-lyase [Mobilicoccus pelagius NBRC
104925]
Length = 454
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIF--ALEDLRK 103
++++WF++DLR+ DH L+AA VVPL V D ++ + + + F + L
Sbjct: 2 TSILWFRRDLRLHDHPALLAAHADGDVVPLVVLDPALV---EDRIPRVAAFLGCVAALAD 58
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
S+ E+G L++R+GR E V+ + E A V E E + R+ V LA +
Sbjct: 59 SIAERGGRLVVRYGRPEEVVPAVATEAGARRVHVTAESEPYGRRRDDAVRAALAAL 114
>gi|448309458|ref|ZP_21499316.1| deoxyribodipyrimidine photolyase [Natronorubrum bangense JCM 10635]
gi|445589881|gb|ELY44104.1| deoxyribodipyrimidine photolyase [Natronorubrum bangense JCM 10635]
Length = 467
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY--QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ W ++DLR D+ GL A+ + +VP++VFD IL S + ++ ALE LR
Sbjct: 3 LYWHRRDLRGTDNRGLARAASLSTEPIVPVFVFDPTILEHASPIRVACLLEALEGLRAWY 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+E+GSDL++ G +VI +L E A +V
Sbjct: 63 RERGSDLLVVRGEASDVIPQLAAEYDAETV 92
>gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
Length = 471
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++W ++DLR+ DH L AA + Q V+ +Y+ D ++ S + L L + AL K+L
Sbjct: 7 IVWVRRDLRLADHPALTAACESGQPVIAVYIHDDQVASLGGAQKLRLDL-ALAQFGKTLA 65
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
++GS L++R G V+R+L+ E A +V+
Sbjct: 66 DRGSRLILRKGPALGVLRDLIRETGAGAVY 95
>gi|340785990|ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
gi|340551257|gb|AEK60632.1| Deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
Length = 510
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVV-PLYVFDHRILSRY------SNEMLELVIFALE 99
+++WF++DLR+ DH L A K A V ++VFD IL ++ +E + ++
Sbjct: 21 SLVWFRRDLRMSDHAALHHALKNSAAVFCVFVFDTDILQPLLDAGLGADRRVEFIRGSVT 80
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+L L++ G L++R G +VI L ++ +VF+ + E RQ A V TLA
Sbjct: 81 ELDLELRKLGGGLLVRHGPAHDVIPALARQLGVNAVFSNHDYEPQARQRDAGVARTLA 138
>gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila]
gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila SB210]
Length = 472
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM---LEL 93
+ ++ + + WF++DLR+ D++GL A K VVPL++FD IL+ ++ +E
Sbjct: 10 SENQKKQKVNLFWFRRDLRLFDNVGLYHALKESIPVVPLFIFDKDILNELEDKKDCRVEF 69
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
+ L ++ +L++ GS ++++ E+ + L+EE + VF + E + ++ +
Sbjct: 70 IHNYLSQMQDNLRKHGSTMVVKHSNAESAFKSLMEEFDISCVFTNRDYEPYAKKRDQQIK 129
Query: 154 ETL 156
E L
Sbjct: 130 EIL 132
>gi|448328561|ref|ZP_21517870.1| deoxyribodipyrimidine photolyase [Natrinema versiforme JCM 10478]
gi|445615302|gb|ELY68951.1| deoxyribodipyrimidine photolyase [Natrinema versiforme JCM 10478]
Length = 468
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
V W ++DLR D+ GL AA+ ++VVP +V D +L S + ++ ALEDLR +
Sbjct: 3 VFWHRRDLRATDNRGLARAAATDESVVPCFVLDPTVLEHASPVRVACLLEALEDLRSWYR 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ-----MMAIVDETLAKVSL 161
++ SDL++ G V+ E+ E T V E+ R+ A+ +E +A S+
Sbjct: 63 DRESDLLVVRGEASAVVPEIAAEYDVTRVVWNEDYSGLARERDRAVRAALEEEGIAAESV 122
Query: 162 VDG 164
D
Sbjct: 123 HDA 125
>gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
Length = 787
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 131/350 (37%), Gaps = 82/350 (23%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA------VVPLYVFDH-------RILSRYSNEMLELV 94
VIWF+ DLR+ D+ + A+ + VVP+YVFD R L+R+ +
Sbjct: 248 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 307
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRE--LVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ + DL+ SL+ GSDL++R G+ +VI E L T + + EV +M V
Sbjct: 308 LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAV 367
Query: 153 DETLAKVSLVDGKPKICL---WQTPFYDIKN--------LNDLPVSHNEFRKLQRPLTSP 201
E + G + W + Y I + L+DLP FR
Sbjct: 368 -ERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRN-------- 418
Query: 202 ILPPTLAGAKLEA-----DWGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDK 255
K+E+ D P PT +EL P +E W M + L
Sbjct: 419 ---------KVESKCKVRDVIPAPTANELGHV----PASVEGFEW-----MPKPSDLPFA 460
Query: 256 LSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDD 315
S++ + + + R LD GG + L ++ YL
Sbjct: 461 SSEIAMDCDKRIKDCLDERSVLD-----------FKGGESNALARVKYYL---------- 499
Query: 316 WQE--LQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
W+ L G ++T P L LG +S R V E ++E ER
Sbjct: 500 WESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYESER 549
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++ W ++DLR+DDH L +A + + VV ++VFD IL S+ ++ + +L +L+
Sbjct: 6 SLCWLRRDLRLDDHAALSSALQQSREVVCVFVFDRAILDSLPASDRRVDFIHRSLCELQA 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L++ GS L+ R+G + + L E+ A VFA ++ E
Sbjct: 66 RLQQHGSTLVCRYGWADEALPALAAELGAQVVFAAQDDE 104
>gi|448305634|ref|ZP_21495563.1| deoxyribodipyrimidine photolyase [Natronorubrum sulfidifaciens JCM
14089]
gi|445588092|gb|ELY42338.1| deoxyribodipyrimidine photolyase [Natronorubrum sulfidifaciens JCM
14089]
Length = 497
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 7/187 (3%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
SG + W ++DLR D+ GLV A A V+P++VFD +L S + ++ ALE L
Sbjct: 29 SGMNLYWHRRDLRGTDNRGLVRAVSRSAEPVIPVFVFDPTVLEHASAVRVACLLEALEGL 88
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
R +E+GSDL++ G +V+ L E +V E+ R+ V L +
Sbjct: 89 RAWYRERGSDLLVARGEASDVLPRLAAEHDIDAVVWAEDYSGLARERDRAVTAALEDDGV 148
Query: 162 VDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSPILPPTLAGAKLEADWG-P 218
+ P N D + F K R P+ PP A L A G P
Sbjct: 149 ACDPVHDAIHHEPGSITPNEGDHYSVFSYFWKKWRDREKLEPLEPP--AADALAAVTGEP 206
Query: 219 LPTFDEL 225
LP+ EL
Sbjct: 207 LPSASEL 213
>gi|452824798|gb|EME31798.1| cryptochrome, DASH family [Galdieria sulphuraria]
Length = 570
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 11/107 (10%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE---------LVI 95
G+A++WF+ +LR+ D+ L A+ +AV+PLYVFD R L R N + + V
Sbjct: 73 GTAILWFRNNLRLSDNSCLDLANTAEAVLPLYVFDKRSLVR--NRLKQQRCGPFRYSFVK 130
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++E L+ +L+ SDL++ G VIREL + + A + ++
Sbjct: 131 ESVEQLQNNLRGLFSDLLVEVGTAAEVIRELCAKYSINHIVAPKMIK 177
>gi|410029665|ref|ZP_11279495.1| deoxyribodipyrimidine photolyase [Marinilabilia sp. AK2]
Length = 433
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 70/130 (53%), Gaps = 6/130 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
++ WF++DLR++D+ GL A ++ + ++P+++FD IL + ++ V F +E L+
Sbjct: 5 SIFWFRRDLRLEDNTGLYYAYNQEKNILPIFIFDRNILDKLEDKKDARVTFIHTQIEKLQ 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA--KVS 160
LK+ GS +++++G + +EL+ +V+ + E + V E L+ V
Sbjct: 65 NQLKDFGSSMLVKYGEPMEIWKELLNSYSIDNVYTNRDYEPYAISRDKRVKELLSGHGVQ 124
Query: 161 LVDGKPKICL 170
+D K ++
Sbjct: 125 FLDFKDQVIF 134
>gi|343084950|ref|YP_004774245.1| DNA photolyase FAD-binding protein [Cyclobacterium marinum DSM 745]
gi|342353484|gb|AEL26014.1| DNA photolyase FAD-binding protein [Cyclobacterium marinum DSM 745]
Length = 434
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 16/138 (11%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNE---MLELVIFALEDLR 102
+ WF++DLR+ D++GL A + + V+PL++FD IL + N+ ++ + ++ L
Sbjct: 5 TLFWFRRDLRLSDNIGLFTAYENEKNVLPLFIFDENILEKLENKNDARVQFIHNQVKKLH 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+LK+ S ++++ G+ + L + +V+ + E + R +++ LA+ +
Sbjct: 65 SALKDYDSSILVKIGKPLAIFEALTKAYAIQNVYTNRDYEPYARDRDEKIEQFLAEKDI- 123
Query: 163 DGKPKICLWQTPFYDIKN 180
PFYD K+
Sbjct: 124 -----------PFYDFKD 130
>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
Length = 471
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHR--ILSRYSNEMLELVIFALEDLRK 103
A++WF+QDLR+ D+ + A S ++ V+PLY++D + +L + L + AL K
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCSVLGQAQAWWLHHSLIALG---K 60
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
SL +QG L++R G + +I ELV + SV+
Sbjct: 61 SLNQQGLSLVLRKGDPQEIILELVAQYGVESVY 93
>gi|297624491|ref|YP_003705925.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
17093]
gi|297165671|gb|ADI15382.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
17093]
Length = 486
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSL 105
++WFK+DLRV DH L A++ AV+ LYV++ + +S LEL+ +L L L
Sbjct: 9 LVWFKRDLRVADHAPLREAARRGAVLCLYVYEPEVYGAETFSGAHLELLNQSLLSLEAEL 68
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+G L+ R G + V+ L ++ +++A EE
Sbjct: 69 AARGGRLVFRVGEMPAVLEALHRDLPLAALYAHEET 104
>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
Length = 493
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--------SRY-----SNEML 91
+A++WF++DLR DH L A K+ + V ++VFD IL +R+ + +
Sbjct: 7 TALVWFRRDLRTTDHAALYHALKHCERVWCVFVFDTTILQPLIDTWQARHPGAPAQDRRV 66
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
E ++ +L +L +L+ QG L++ +G +++ +L +E++ +VFA + E +
Sbjct: 67 EFILASLRELDDALRAQGGGLIVLYGDPADLVPKLADELRVDAVFANHDYEPAAIERDET 126
Query: 152 VDETLAKVS 160
V E LA+
Sbjct: 127 VRERLAEAG 135
>gi|448546468|ref|ZP_21626632.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548505|ref|ZP_21627724.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557855|ref|ZP_21632841.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702921|gb|ELZ54861.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445713992|gb|ELZ65763.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714263|gb|ELZ66028.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 484
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ V PL+VFD +L + ++ AL +LR + +E+G
Sbjct: 5 WHRRDLRVADNRGLATAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALSELRDAYRERG 64
Query: 110 SDLMIRFGRVENVI 123
SDL++ G V+
Sbjct: 65 SDLLVARGDPRTVV 78
>gi|404450628|ref|ZP_11015608.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
gi|403763683|gb|EJZ24627.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
Length = 432
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---LELVIFALEDLR 102
++ WF++DLR++D+ GL A + + V+PL++FD IL ++ +E + ++ +
Sbjct: 5 SIFWFRRDLRLEDNTGLYYAFEQEENVLPLFIFDRNILDDLEDKKDARVEFIHDQIQKIS 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK--VS 160
LK+ S +++++G+ ++ +EL+EE +V+ + E + ++ V + L + +
Sbjct: 65 NGLKDFESSILVKYGKPLDIWQELLEEYDIQNVYTNRDYEPYAKERDTQVKKLLKERNIQ 124
Query: 161 LVDGKPKICL 170
+D K ++
Sbjct: 125 FLDFKDQVIF 134
>gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
Length = 434
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEMLELVIF--ALEDLRKS 104
+ WF++DLR+DD++G A K V+P+++FD ILS+ + + L+++R++
Sbjct: 7 IFWFRRDLRLDDNVGFYEALKGNHPVLPIFIFDSEILSKLPKDDARITFIHETLQNIRQT 66
Query: 105 LKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L++ S + + +G+ + V +L+++ SV+ + E + ++ V LA+ ++
Sbjct: 67 LQDNYRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEVKSVLAEHNI 124
>gi|383771224|ref|YP_005450289.1| DNA photolyase [Bradyrhizobium sp. S23321]
gi|381359347|dbj|BAL76177.1| DNA photolyase [Bradyrhizobium sp. S23321]
Length = 479
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF+ DLR+ DH L AA+K A V+ LYV D + +L L ++
Sbjct: 8 IVWFRDDLRLSDHPALHAAAKTGAPVICLYVLDDAAGRAPGGAARWWLAQSLRALGADIR 67
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+G L++R G VI E+ + AT+V+ E + + + ++ LAK+ +
Sbjct: 68 RRGGSLILRKGPAAGVIPEVARAIGATAVYWNEVAQAPHQSVEKALEAALAKLGI 122
>gi|372271292|ref|ZP_09507340.1| deoxyribodipyrimidine photolyase [Marinobacterium stanieri S30]
Length = 502
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALED 100
+S ++WFK+DLR+ DH L A+++ V+PL++ + + +S + +L D
Sbjct: 2 KSQVNIVWFKRDLRLHDHPALTEAAQHGPVLPLFIVEPGYWQQPDHSVRHWQFCHDSLLD 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L+++L +QG L+IR G + V+ EL +++ EE
Sbjct: 62 LQQALAQQGLPLLIRIGDIGQVLAELKNFFGHFHLWSHEET 102
>gi|344341374|ref|ZP_08772294.1| DNA photolyase FAD-binding [Thiocapsa marina 5811]
gi|343798709|gb|EGV16663.1| DNA photolyase FAD-binding [Thiocapsa marina 5811]
Length = 525
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV DH L A++ V+PLYV + S+ S + L +LR L
Sbjct: 3 LVWFKRDLRVYDHAALAEAARRGPVLPLYVAEPEYWSQPDASGRHWAFIAECLGELRTDL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L+IR G V+ EL+ + +V++ EE
Sbjct: 63 AALGQPLVIRVGEAIPVLIELLNRLPIQTVWSHEET 98
>gi|448450570|ref|ZP_21592389.1| DNA photolyase FAD-binding protein [Halorubrum litoreum JCM 13561]
gi|445811684|gb|EMA61687.1| DNA photolyase FAD-binding protein [Halorubrum litoreum JCM 13561]
Length = 461
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W + D R D+ GL AA++ VVP +V+D +L+ + ++ L +E
Sbjct: 3 LFWHRGDARTRDNAGLAAAARKGEVVPTFVYDSDLLATIGARQRAFFLRHIKRLEARYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
GSDL++R G + V+ +L +E A +V+ ++ R V++ LA +
Sbjct: 63 LGSDLVVRAGDPDEVLVDLADEYDAEAVYYDDHYRPARRNRGRAVEDALAGAGV 116
>gi|448498516|ref|ZP_21610866.1| DNA photolyase FAD-binding protein [Halorubrum coriense DSM 10284]
gi|445698625|gb|ELZ50666.1| DNA photolyase FAD-binding protein [Halorubrum coriense DSM 10284]
Length = 461
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W + D R D+ GL AA++ +VP++V+D +L + ++ L + +E
Sbjct: 3 LFWHRGDARTRDNAGLAAAARDGELVPVFVYDADLLGTVGARQRAFFLRHVKRLEERYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL-VDGKP 166
GSDL++R G E V+ +L A +VF E R V++ LA + D +
Sbjct: 63 LGSDLVVRAGDPEEVVVDLAAAYDAETVFYNEHYRPARRNRQRAVEDALAGAGVDTDSRT 122
Query: 167 KICL 170
+ L
Sbjct: 123 DLVL 126
>gi|448601043|ref|ZP_21656326.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734646|gb|ELZ86204.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 484
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ V PL+VFD +L + ++ AL +LR + +E+G
Sbjct: 5 WHRRDLRVADNRGLATAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALSELRDAYRERG 64
Query: 110 SDLMIRFGRVENVI 123
SDL++ G V+
Sbjct: 65 SDLLVARGDPRTVV 78
>gi|448568084|ref|ZP_21637692.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727546|gb|ELZ79157.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 484
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ V PL+VFD +L + ++ AL +LR + +E+G
Sbjct: 5 WHRRDLRVADNRGLATAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALSELRDAYRERG 64
Query: 110 SDLMIRFGRVENVI 123
SDL++ G V+
Sbjct: 65 SDLLVARGDPRTVV 78
>gi|443244632|ref|YP_007377857.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
gi|442802031|gb|AGC77836.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
Length = 440
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKS 104
V WF++DLR+DD++G A K V+P+++FD IL + + + + L+ +R
Sbjct: 7 VFWFRRDLRLDDNVGFYEALKSDLPVLPIFIFDKEILDKLPEDDARVSFIYEELQRMRSQ 66
Query: 105 L-KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L ++Q S L + +G+ + + +E++ +VF + E + ++ +D+ LA+ ++
Sbjct: 67 LQQDQDSSLAMYYGKPQEIWKEIISSYDVDTVFTNRDYEPYAKERDEEIDQLLAEHNI 124
>gi|75320690|sp|Q5IFN2.1|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri]
Length = 546
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 131/350 (37%), Gaps = 82/350 (23%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA------VVPLYVFDH-------RILSRYSNEMLELV 94
VIWF+ DLR+ D+ + A+ + VVP+YVFD R L+R+ +
Sbjct: 7 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 66
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRE--LVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ + DL+ SL+ GSDL++R G+ +VI E L T + + EV +M V
Sbjct: 67 LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAV 126
Query: 153 DETLAKVSLVDGKPKICL---WQTPFYDIKN--------LNDLPVSHNEFRKLQRPLTSP 201
E + G + W + Y I + L+DLP FR
Sbjct: 127 -ERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRN-------- 177
Query: 202 ILPPTLAGAKLEA-----DWGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDK 255
K+E+ D P PT +EL P +E W M + L
Sbjct: 178 ---------KVESKCKVRDVIPAPTANELGHV----PASVEGFEW-----MPKPSDLPFA 219
Query: 256 LSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDD 315
S++ + + + R LD GG + L ++ YL
Sbjct: 220 SSEIAMDCDKRIKDCLDERSVLD-----------FKGGESNALARVKYYL---------- 258
Query: 316 WQE--LQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
W+ L G ++T P L LG +S R V E ++E ER
Sbjct: 259 WESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYESER 308
>gi|448492208|ref|ZP_21608802.1| DNA photolyase FAD-binding protein [Halorubrum californiensis DSM
19288]
gi|445691667|gb|ELZ43851.1| DNA photolyase FAD-binding protein [Halorubrum californiensis DSM
19288]
Length = 461
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W + D R D+ GL AA++ VVP++V+D +L+ + ++ L ++
Sbjct: 3 LFWHRGDARTRDNAGLAAATREGDVVPVFVYDSDLLATVGARQRAFFLRHVKRLEARYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL-VDGKP 166
GSDL++R G E+V+ +L E A +V + R V+ LA + D +
Sbjct: 63 LGSDLIVRAGDPEDVLVDLAAEYDAEAVIYNDHYRPARRNRQRAVEGALAGAGVETDSRT 122
Query: 167 KICLWQTPFYDIKNLNDLPVSHNEF 191
+ L D LN+ +H++F
Sbjct: 123 DLVL-----VDPGRLNERYPNHSQF 142
>gi|338210905|ref|YP_004654954.1| deoxyribodipyrimidine photo-lyase [Runella slithyformis DSM 19594]
gi|336304720|gb|AEI47822.1| Deoxyribodipyrimidine photo-lyase [Runella slithyformis DSM 19594]
Length = 436
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEM---LELVIFALEDLR 102
+ WF++DLR+ D+ GL A K V+P+++FD IL + ++ +E + A+ +L
Sbjct: 6 TLFWFRRDLRLHDNAGLYHALKSGNPVLPVFIFDTEILDKLEDKKDRRVEFIHEAIRELH 65
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L + GS L++R+G+ ++ ++L EE V + E
Sbjct: 66 TQLTQLGSTLIVRYGKPADIWQQLSEEYDIAEVHTNHDYE 105
>gi|390569912|ref|ZP_10250187.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|420254982|ref|ZP_14757945.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
gi|389938145|gb|EIM99998.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|398047192|gb|EJL39755.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
Length = 504
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 47/253 (18%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--------------SRYSNEM 90
+ ++WF++DLR D+ L A K+ + V ++VFD IL + +
Sbjct: 13 NGLVWFRRDLRTGDNAALYYALKHCERVWCVFVFDTTILQPLIDWANEHDDHKGKVQDRR 72
Query: 91 LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-----------EE 139
+E ++ +LE+L +SLKE G L++ G I L +++A +VF +E
Sbjct: 73 IEFILASLEELDRSLKEGGGGLIVLHGDPHEEIPRLAAQLEAEAVFTNHDYEPVAIERDE 132
Query: 140 EVEYHL----RQMMAIVDETL-AKVSLVDGKPKICLWQTPFYD--IKNLNDLPVSHNEFR 192
V L RQ++ D+ + + L++G+ K TP+ + +K L +
Sbjct: 133 SVAERLRDDGRQLLTFKDQVIFEREELLNGQGKPFAVFTPYKNAWLKKLTPFDLKPYPVE 192
Query: 193 KLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETIL 252
+ + L P KL+ W PT ++ P KL E+ L A+T+L
Sbjct: 193 RYAKSLARP-------PRKLDHAW---PTLGQM----GFAPGKLAETKLLTGMSGAQTLL 238
Query: 253 TDKLSKLGKRSKR 265
D ++++ + R
Sbjct: 239 EDFVTRIDSYADR 251
>gi|359401211|ref|ZP_09194182.1| deoxyribodipyrimidine photo-lyase [Novosphingobium
pentaromativorans US6-1]
gi|357597460|gb|EHJ59207.1| deoxyribodipyrimidine photo-lyase [Novosphingobium
pentaromativorans US6-1]
Length = 469
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD-----HRILSRYSNEMLELVIFALEDLR 102
++WF++DLR+ D L AA+ V+P+YV D HR + S L ++L L
Sbjct: 18 IVWFRRDLRLSDQAALAAAAAQGPVLPVYVLDDETPRHRAMGGASRWWLH---YSLASLD 74
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+E+GS L++R G+ E+V+ L +E A+ V A E
Sbjct: 75 ATLREKGSRLILRKGKCEDVLAALAQETGASEVHALHHYE 114
>gi|403508998|ref|YP_006640636.1| FAD binding domain of DNA photolyase family protein [Nocardiopsis
alba ATCC BAA-2165]
gi|402802793|gb|AFR10203.1| FAD binding domain of DNA photolyase family protein [Nocardiopsis
alba ATCC BAA-2165]
Length = 437
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++ F QDLR+ DH L AA + + VVPL+V + +L R + + AL DLR L+
Sbjct: 6 LVLFTQDLRLHDHPALTAALEESETVVPLFVLEPGLLRRAARNRRAYLTEALADLRSGLR 65
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSV 135
+ G DL++R G +R L E A +V
Sbjct: 66 DLGGDLVLRRGDTTTEVRVLARETGARAV 94
>gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
Length = 438
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEM---LELVIFALEDLR 102
+++W ++DLR+ D+ L A K + V+P+++FD IL + + +E ++ + L
Sbjct: 6 SLVWLRRDLRLHDNAALYYALKSGRPVIPVFIFDRVILDALDDRLDRRVEFLVQEVNRLH 65
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
L + GS +++R+G+ +V +EL+E VF + E + ++ + E LA+
Sbjct: 66 DELAKLGSTIIVRYGKPVDVWKELIETYTIGDVFTNHDYEGYAKERDKAIGELLAE 121
>gi|255037995|ref|YP_003088616.1| deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
gi|254950751|gb|ACT95451.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
Length = 442
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 41 KGRSGSAVIWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILS---RYSNEMLELVI 95
K + A+ WF++DLR+ D+ GL A S Y VVPL++FD IL ++ L +
Sbjct: 4 KTKDKIAIFWFRRDLRLHDNAGLYYALRSGY-PVVPLFIFDRNILDDLEEKTDARLTFIH 62
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
A+ ++R++L+++ +D+M+ +G E + LV V+ + E
Sbjct: 63 KAVSEIRQALRQKEADIMVEYGFPEKIWENLVAGHDIAEVYTNTDYE 109
>gi|389848325|ref|YP_006350564.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|448618531|ref|ZP_21666768.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|388245631|gb|AFK20577.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|445746902|gb|ELZ98360.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
Length = 482
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 18/194 (9%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL AA++ + + PL+VFD +L + + ++ AL +LR S + G
Sbjct: 5 WHRRDLRVVDNRGLTAAAEARPIAPLFVFDQAVLEHAGSPRVRYMLDALAELRASYQSLG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL++ G + V+ + ++A V + R+ A V L S+
Sbjct: 65 SDLLVAHGDPKAVVPAVAAALEADGVVWNTDYSGVARERDANVRSALDDASVSYESVHDA 124
Query: 170 LWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPP------------------TLAGAK 211
++ P N D + F K R P P TL+ A
Sbjct: 125 IFHPPGSITTNAGDPYSVYTYFWKKWRDRDKPDPYPEPDADSLVDAAVLEAASETLSDAD 184
Query: 212 LEADWGPLPTFDEL 225
+ G LPT +L
Sbjct: 185 FDVAVGDLPTISDL 198
>gi|410944062|ref|ZP_11375803.1| deoxyribodipyrimidine photolyase [Gluconobacter frateurii NBRC
101659]
Length = 483
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 39 TSKGRSGSA---VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYS--NEMLE 92
++KG SA ++WF++DLR+ DHL L AA + Q ++ LYV D + +S
Sbjct: 2 SAKGHHTSAPPVIVWFREDLRLSDHLALQAALATGQPLICLYVLDDETPALHSLGGASRW 61
Query: 93 LVIFALEDLRKSL-KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
+ AL DLR++L + QG+ LM++ G E ++ +L E A SV+ + R+
Sbjct: 62 WLHGALADLRRTLGRHQGTLLMLK-GSAEKLVPQLARETGAQSVYWHHRLHQKEREQ--- 117
Query: 152 VDETLAKVSLVDGKPKICLWQTPFYD 177
DE +A G W T D
Sbjct: 118 -DERIAIALKTQGAAAEGSWGTVLLD 142
>gi|408675634|ref|YP_006875382.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
gi|387857258|gb|AFK05355.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
Length = 437
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILSRYSNEM---LELVIFALEDL 101
A+ WF++DLR++D+ GL A S Y+ V+P+++FD IL++ N+ +E + AL +L
Sbjct: 7 AIFWFRRDLRLNDNAGLYHALRSGYK-VLPIFIFDTNILNKLENKQDQRVEFIHHALSEL 65
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++SL + S ++I+ G + + + EE + V+ + E
Sbjct: 66 QRSLSKLQSSILIKKGEPIEIWKLISEEYEIAEVYTNHDYE 106
>gi|448424853|ref|ZP_21582631.1| DNA photolyase FAD-binding protein [Halorubrum terrestre JCM 10247]
gi|445681699|gb|ELZ34128.1| DNA photolyase FAD-binding protein [Halorubrum terrestre JCM 10247]
Length = 461
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W + D R D+ GL AA++ VVP +V+D +L+ + ++ L +E
Sbjct: 3 LFWHRGDARTRDNAGLAAAARKGEVVPTFVYDSDLLATIGARQRAFFLRHIKRLEARYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
GSDL++R G + V+ +L +E A +V+ + R V++ LA +
Sbjct: 63 LGSDLVVRAGDPDEVLVDLADEYDAEAVYYNDHYRPARRNRGRAVEDALAGAGV 116
>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
Length = 513
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR------YSNEMLELVIFALE 99
++W ++DLR DD+ L A K+ + V ++VFD IL+ +++ +E ++ +LE
Sbjct: 27 GLVWLRRDLRTDDNAALHYALKHCRQVWCVFVFDREILAPLLARGLHADRRVEFILRSLE 86
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
LR++L++ G L++ G I L E++ +VFA + E V TLA
Sbjct: 87 PLRRALEDSGGGLIVLDGTARQAIPRLAAELEVEAVFANHDYEPAANDRDEAVRRTLAAD 146
Query: 160 SLV 162
S V
Sbjct: 147 SRV 149
>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
Length = 437
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALE 99
R + WF++DLR+DD++G +A+ K + V+P+++FD IL + + + L+
Sbjct: 3 RDKINIFWFRRDLRLDDNVGFLASLKEEHPVMPIFIFDPEILDNLPEDDARVTFIFETLQ 62
Query: 100 DLRKSLKE-QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR----QMMAIVDE 154
D+R L+E S + + G+ E V +EL++ VF + E + + ++ ++DE
Sbjct: 63 DMRNELQENHHSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPYAKDRDEKIQKLLDE 122
Query: 155 TLAK 158
K
Sbjct: 123 NNVK 126
>gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
23-P]
gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
23-P]
Length = 434
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALE 99
+ + WF++DLR+DD++G A K + V+P+++FD IL + E L + L+
Sbjct: 2 KDAVNIFWFRRDLRLDDNVGFYNALKSEHPVLPIFIFDEDILDKLQKEDARLNFIYDTLQ 61
Query: 100 DLRKSL-KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
D+R L K+ GS + + G + +L+ E +VF + E
Sbjct: 62 DMRAILEKKHGSSIAMLHGNPSAIFEKLISEYSIHTVFTNRDYE 105
>gi|126727582|ref|ZP_01743415.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2150]
gi|126703172|gb|EBA02272.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2150]
Length = 511
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRK 103
++WFK+DLRV DH L+AAS + ++PLY+ + + + L DL K
Sbjct: 6 CIVWFKRDLRVQDHAPLLAASHTNRPIIPLYIIEPECWQQPDVARRHWHFTHDCLVDLNK 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + G L+I G +VI +L ++ A +FA EE
Sbjct: 66 DLTDLGQPLIIAVGVAVDVIAQLQKKFGAVDLFAHEET 103
>gi|395802067|ref|ZP_10481321.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
gi|395435798|gb|EJG01738.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
Length = 431
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+ WF++DLR++D+ GL A + VVPL++FD IL R ++ + + +L+ +
Sbjct: 7 TLFWFRRDLRLEDNTGLFHALQSNFPVVPLFIFDDDILDRLPKNDARVTFIYDSLQKVNS 66
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIV 152
L + S ++I+ G+ ++V + L+E+ SVF ++ E + +++ AI
Sbjct: 67 ELNKLDSSILIKKGKTKDVWKSLIEKFDIQSVFFNKDYEPFAIKRDTAIT 116
>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
Length = 471
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHR--ILSRYSNEMLELVIFALEDLRK 103
A++WF+QDLR+ D+ + A S ++ V+PLY++D + +L + L + AL K
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCSVLGQAQAWWLHHSLIALG---K 60
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
SL +QG L++R G + +I ELV + SV+
Sbjct: 61 SLNQQGLCLVLRKGAPQEIILELVAQYGVESVY 93
>gi|334142421|ref|YP_004535629.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. PP1Y]
gi|333940453|emb|CCA93811.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. PP1Y]
Length = 469
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD-----HRILSRYSNEMLELVIFALEDLR 102
++WF++DLR+ D L AA+ V+P+YV D HR + S L ++L L
Sbjct: 18 IVWFRRDLRLSDQAALAAAAAQGPVLPVYVLDDETPRHRAMGSASRWWLH---YSLASLD 74
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+E+GS L++R G+ E+V+ L +E A+ V A E
Sbjct: 75 ATLREKGSRLILRKGKCEDVLAALAQESGASEVHALHHYE 114
>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
Length = 435
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 23/175 (13%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRIL-------SRYSNEMLELVIFAL 98
A++WF+ DLR+DD+ L+ AA +A++ LY + R R + + +L
Sbjct: 4 ALLWFRHDLRLDDNPALLRAAQAKEALLCLYCIEPRWFVADNWQSRRVGDHPWRFISESL 63
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIREL-----VEEVKATSVFAEEEVEYHLRQMMAIVD 153
DL L+ G L+IR G +I L ++++ T+ F EEE RQ +A+
Sbjct: 64 LDLANRLEALGQQLVIRIGDPNTLIPGLMRNHWIDKLICTAPFGEEER----RQYLALKQ 119
Query: 154 ET-LAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEF-RKLQRPLTSPILPPT 206
E + + L Q PF L++LP + ++F R++QR P+ PP
Sbjct: 120 EVGEHRCEVWQSHTLFTLEQLPF----ALDELPPTFSQFRRRVQRLEWRPLYPPV 170
>gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
MED152]
gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
MED152]
Length = 434
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALEDLRK 103
V WF++DLR+DD++G A K + V+P+++FD ILS+ + + + L+++R
Sbjct: 6 TVFWFRRDLRLDDNIGFYNALKSEHKVLPIFIFDKEILSKLPKDDARVTFIYDTLQEMRG 65
Query: 104 SLKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L++ GS + + G E+V EL++ +VF + E
Sbjct: 66 ELQDNYGSSIAMFHGNPESVFSELIKNYTIDAVFTNRDYE 105
>gi|448481862|ref|ZP_21605177.1| DNA photolyase FAD-binding protein [Halorubrum arcis JCM 13916]
gi|445821561|gb|EMA71350.1| DNA photolyase FAD-binding protein [Halorubrum arcis JCM 13916]
Length = 461
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W + D R D+ GL AA++ VVP +V+D +L+ + ++ L +E
Sbjct: 3 LFWHRGDARTRDNAGLAAAARKGEVVPTFVYDSDLLATIGARQRAFFLRHIKRLEARYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
GSDL++R G + V+ +L +E A +V+ + R V++ LA +
Sbjct: 63 LGSDLVVRAGDPDEVLVDLADEYDAEAVYYNDHYRPARRNRGRAVEDALAGAGV 116
>gi|255020504|ref|ZP_05292568.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|254970024|gb|EET27522.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
Length = 493
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
A++WFK+DLR DH L AA++ ++ V LYV + L + + E + +L +LR +
Sbjct: 5 ALVWFKRDLRCTDHAPLAAAARCRSAVGLYVLEDEWLGAPEWDPQHWEFIRQSLLELRDN 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L +G L++R G + V+ +L + T + + EE
Sbjct: 65 LAARGMPLLLRRGAMPLVLAQLWRDYPFTELLSHEET 101
>gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
tsutsugamushi str. Ikeda]
gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
tsutsugamushi str. Ikeda]
Length = 505
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEM---LELVIFALEDLR 102
+++W +++LR++D+ A K + ++P+++FD IL +SN + L + + +L
Sbjct: 7 SIVWLRRNLRLEDNKPFAEALKSSKKIIPIFIFDTTILQNFSNPLDRRLSFLANTIYNLN 66
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
L+E +L++ +G +I +L+E++ +++A+EE + I D+ + +
Sbjct: 67 SELQELEGNLLVLYGNSVEIIPKLIEKLNIQTIYADEEYD----PENVIRDQKITNLLEF 122
Query: 163 DGKPKICL 170
+GK K+ L
Sbjct: 123 NGKSKLEL 130
>gi|340781033|ref|YP_004747640.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|340555186|gb|AEK56940.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 493
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
A++WFK+DLR DH L AA++ ++ V LYV + L + + E + +L +LR +
Sbjct: 5 ALVWFKRDLRCTDHAPLAAAARCRSAVGLYVLEDEWLGAPEWDPQHWEFIRQSLLELRDN 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L +G L++R G + V+ +L + T + + EE
Sbjct: 65 LAARGMPLLLRRGAMPLVLAQLWRDYPFTELLSHEET 101
>gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
Length = 484
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRY--SNEMLELVIFALE 99
R+ A++ F++DLR+ DH L AA++ A V+P+Y+ D R+ + +L
Sbjct: 6 RAAPALVLFRRDLRLADHPALSAAAETGAPVLPVYILDDETPGRWRMGGASRWWLYQSLR 65
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
L L+ +GS L++R G + V+ EL+EE A SV E + R + + +L
Sbjct: 66 SLGADLEARGSRLVLRHGETKRVLGELIEETGARSVLFTRGYEPYQRALEGRLKPSL 122
>gi|423465178|ref|ZP_17441946.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
gi|402418939|gb|EJV51227.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
Length = 476
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+L L A++ VVP+YV D + S L A+ D++K L+
Sbjct: 6 IVMFQKDFRLYDNLALFEAAQSGEVVPVYVHDETFSMGSASKWWLH---HAVIDVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E IR L+E+++ T+V+
Sbjct: 63 ALGSTLIIRKGRTEEEIRSLIEQLRITAVY 92
>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175848|ref|YP_004652658.1| hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480206|emb|CCB86804.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 474
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD-----HRILSRYSNEMLELVIFALEDLR 102
++W +QDLR++DH L AA++ +V+PLY++ H L S L +L+ L
Sbjct: 6 IVWMRQDLRIEDHPALDAAAQRGSVIPLYIWSPQEEGHWPLGGASKWWLH---HSLKSLE 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L+ G L+IR G+ + +R++++E A +VF E
Sbjct: 63 NDLRSLGLPLIIRKGKSLDCLRDVIKETNADAVFWSRRYE 102
>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293624|ref|ZP_21483728.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445569955|gb|ELY24522.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 484
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ V PL+VFD +L + ++ AL +LR + +E+G
Sbjct: 5 WHRRDLRVADNRGLATAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALAELRGAYQERG 64
Query: 110 SDLMIRFGRVENVI 123
SDL++ G V+
Sbjct: 65 SDLLVARGDPRTVV 78
>gi|448565168|ref|ZP_21636139.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
gi|445715827|gb|ELZ67580.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
Length = 151
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-------------ILSRYSNEMLE 92
+++ WF++DLR+ D+ L AA V+P+Y D R +
Sbjct: 5 TSLAWFRRDLRLHDNEALAAACDADGVLPVYCLDPREYGDRPFGGSDSFDFDKTGAHRAR 64
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+ +L DLR SL+++GSDL++R G E+V+ EL V A V
Sbjct: 65 FRLESLSDLRASLRDRGSDLVVREGTPESVLPELAATVDADFV 107
>gi|254875807|ref|ZP_05248517.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254841828|gb|EET20242.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 499
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
V+WFK+DLR++D+L L AS+ + V+PLY+ + ++ + S+ + LE+L L
Sbjct: 3 VVWFKRDLRINDNLALSLASEKEDVLPLYIIEPKLWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++ G V +L+++ SV++ +E
Sbjct: 63 TRLGQPLILMIGDAVEVFEQLIQQYPINSVWSHQET 98
>gi|440749714|ref|ZP_20928960.1| Deoxyribodipyrimidine photolyase [Mariniradius saccharolyticus AK6]
gi|436482000|gb|ELP38146.1| Deoxyribodipyrimidine photolyase [Mariniradius saccharolyticus AK6]
Length = 434
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
++ WF++DLR++D+ GL A + + V+PL+VFD IL + ++ V F ++ L
Sbjct: 5 SLFWFRRDLRLEDNTGLFYAYQQEKNVLPLFVFDRNILDKLEDKDDARVTFIHDQIQRLS 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
L+ GS +++++G +V REL+E V+ + E + ++
Sbjct: 65 SELQHFGSSILVKYGSPLDVYRELLETYDIQVVYTNRDYEPYAKE 109
>gi|379748449|ref|YP_005339270.1| phr protein [Mycobacterium intracellulare ATCC 13950]
gi|379755734|ref|YP_005344406.1| phr protein [Mycobacterium intracellulare MOTT-02]
gi|378800813|gb|AFC44949.1| phr protein [Mycobacterium intracellulare ATCC 13950]
gi|378805950|gb|AFC50085.1| phr protein [Mycobacterium intracellulare MOTT-02]
Length = 442
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+ DH L+AA++ V+ +V D R+ S L+ + +L LR L
Sbjct: 3 ALLWFRRDLRLRDHPALLAAAEGGEVLACFVLDPRLESSSGQRRLQFLGDSLRRLRADLD 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+ L++ GR + I + +E+ ATSV E+ + V L V LV
Sbjct: 63 GR---LLVTRGRPDTQIPRIAKEIGATSVHISEDFAPFGTRRDERVRAALGAVPLV 115
>gi|294508369|ref|YP_003572427.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294344697|emb|CBH25475.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 537
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRK 103
+ ++W+K+DLRV DH L A+ V+PLYV + I + Y L+ AL +LR
Sbjct: 49 TQIVWYKRDLRVGDHRPLAEAADRGPVLPLYVAEPSIAAGADYHPRHWTLIREALIELRA 108
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L ++G L++R G + V+ L ++A EE
Sbjct: 109 RLAKRGQPLIVRCGEMPEVLESLRATAGPLRLWAHEET 146
>gi|372221339|ref|ZP_09499760.1| deoxyribodipyrimidine photo-lyase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 436
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNE--MLELVIFALEDLRK 103
++ WF++DLR++D++GL A S ++P+++FD IL + + + L+ +RK
Sbjct: 6 SIFWFRRDLRLEDNVGLYQALSGDYPILPIFIFDKEILDNLPKDDARVTFIFETLQQMRK 65
Query: 104 SLKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+L+++ S L I + + V ++LV++ +VF + E + +Q V E L
Sbjct: 66 TLQDKVDSSLAIFYDTPKTVFKKLVDDYNIETVFTNHDYEPYAKQRDTAVKEFL 119
>gi|448622754|ref|ZP_21669403.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753262|gb|EMA04679.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 484
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ V PL+VFD +L + ++ AL +LR++ +++G
Sbjct: 5 WHRRDLRVADNRGLATAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALAELREAYRDRG 64
Query: 110 SDLMIRFGRVENVI 123
SDL++ G V+
Sbjct: 65 SDLLVARGDPRTVV 78
>gi|375148275|ref|YP_005010716.1| deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
gi|361062321|gb|AEW01313.1| Deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
Length = 435
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRY---SNEMLELVIFALEDLRK 103
+ WF++DLR+DD+ GL A K V+P+++FD IL + S+ +E + AL +++
Sbjct: 6 IFWFRRDLRLDDNAGLYHALKGNNPVLPIFIFDTNILDQLPNTSDARVEFIHDALTGMQE 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
LKE GS L + N ++LV++ +V+ + E
Sbjct: 66 QLKELGSTLDVLHDTPLNAFKKLVKQYTIEAVYTNHDYE 104
>gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 550
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
V+WF++DLR+ DH L A++ +VP++VFD +L + + ++ L L +
Sbjct: 4 TVVWFRRDLRIADHEPLYRAARRGLIVPVFVFDRALLKHPETGSGRVRFMLSCLAALDED 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAKVSL-- 161
L+ +G L++R G V+ +LV E ++ +++ + E + R A +++ L + L
Sbjct: 64 LRSRGGRLILRSGDPVEVLPKLVRETQSDGIYSYIDYERIYGRVRDARLNQALTREGLKV 123
Query: 162 -----VDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPI-LPPTLAGAKLEA 214
+ G P + P+ D + L + R Q P I +PP ++ +L +
Sbjct: 124 RWFEPLGGTPDL----VPYPDYRQL-----WYQSVRSPQIPTPQKIEVPPDISSDELPS 173
>gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera versatilis 301]
gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera versatilis 301]
Length = 479
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEM---LEL 93
A K +++WF++DLR DH L A K + V ++VFD IL++ +++ +E
Sbjct: 4 AQQKSTYEKSLVWFRRDLRDYDHAALYHALKSSKKVYCVFVFDTAILNQLNDKADRRVEF 63
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
+ ++ +L+ SL++ GSDL++ G + I +L + +VF + E A V
Sbjct: 64 IWESVRELKTSLQKHGSDLIVLHGNAGDEIPKLANTLLVNAVFTNHDYEPSAITRDAHVA 123
Query: 154 ETLAKVSL------------------VDGKPKICLWQTPFYD--IKNLNDL-----PVSH 188
E L K S+ + GKP C++ TP+ + +K +ND PV
Sbjct: 124 EQLNKSSIAFHHYKDHVIFEKDEVLNLSGKP-YCVF-TPYKNMWLKTVNDFFFKAYPVD- 180
Query: 189 NEFRKLQRPLTSPIL 203
N L + SP +
Sbjct: 181 NHLNNLAKTNASPFI 195
>gi|374289278|ref|YP_005036363.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
SJ]
gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
SJ]
Length = 434
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 41 KGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY--SNEMLELVIFA 97
K + ++ WF++DLRV+D++GL A + V+P+++FD IL++ + + +
Sbjct: 3 KNKDKVSIFWFRRDLRVEDNIGLYHALNSSFPVLPIFIFDKNILNKLERDDSRVSFIHEC 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVD 153
L++L + ++ DL+ + +N +E+ E V+ E+ E Y L + +I D
Sbjct: 63 LQNLSEKFRKYDGDLLTFYNSPKNAWKEIFESFDVQEVYTNEDYEPYALSRDKSIED 119
>gi|430807586|ref|ZP_19434701.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
gi|429500109|gb|EKZ98493.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
Length = 518
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR------YSNEMLELVIFALE 99
++W ++DLR DD+ L A K+ + V ++VFD IL+ +++ +E ++ LE
Sbjct: 27 GLVWLRRDLRTDDNAALHYALKHCRQVWCVFVFDREILAPLLARGLHADRRVEFILRTLE 86
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
LR++L++ G L++ G I L E++ +VFA + E V TLA
Sbjct: 87 PLRRALEDSGGGLIVLDGTARQAIPRLAAELEVEAVFANHDYEPAANARDDAVRRTLAAD 146
Query: 160 SLV 162
S V
Sbjct: 147 SRV 149
>gi|448531324|ref|ZP_21621011.1| DNA photolyase FAD-binding protein [Halorubrum hochstenium ATCC
700873]
gi|445707281|gb|ELZ59139.1| DNA photolyase FAD-binding protein [Halorubrum hochstenium ATCC
700873]
Length = 461
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W + D R D+ GL AA++ VVP +V+D +L+ + ++ L + +E
Sbjct: 3 LFWHRGDARTRDNAGLAAAAREGEVVPAFVYDADLLATVGARQRAFFLRHVKRLEERYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL-VDGKP 166
SDL++R G + V+ +L E +A +VF E R V++ LA + D +
Sbjct: 63 LESDLIVRAGDPDEVLADLAAEYEAETVFYNEHYRPARRNRQRAVEDALAGAGVETDSRT 122
Query: 167 KICL 170
+ L
Sbjct: 123 DLVL 126
>gi|83816774|ref|YP_446431.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83758168|gb|ABC46281.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM
13855]
Length = 537
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRK 103
+ ++W+K+DLRV DH L A+ V+PLYV + I + Y L+ AL +LR
Sbjct: 49 TQIVWYKRDLRVGDHRPLAEAADRGPVLPLYVAEPSIAAGADYHPRHWTLIREALIELRA 108
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L ++G L++R G + V+ L ++A EE
Sbjct: 109 RLAKRGQPLVVRCGEMPEVLESLRATAGPLRLWAHEET 146
>gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
HTCC2654]
gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
HTCC2654]
Length = 475
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRK 103
+ + ++WF++DLR+ DH L AA+ V+PL++ D + + L L +
Sbjct: 3 ASTVILWFRRDLRLSDHPALWAAANAGLVIPLFIRDQSVDGLGAAAKWRLGE-GLRVFGE 61
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+L+++G L++R G +V+RE++EE AT V
Sbjct: 62 ALEDRGLKLILRRGNARDVLREVIEETGATEV 93
>gi|432928263|ref|XP_004081133.1| PREDICTED: cryptochrome DASH-like [Oryzias latipes]
Length = 521
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 35/205 (17%)
Query: 48 VIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHR-ILSRYSNEM-------LELVIFAL 98
+ + DLR+ D+ L A +VPLY FD R + Y+ L ++ ++
Sbjct: 8 ICLLRNDLRLHDNELFFWAQKNADHIVPLYCFDPRHYVGTYNFNFPKTGPFRLRFLLDSV 67
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVDETLA 157
DLR +L +GS+L++R G+ E V+ +L++++ + S A EEV + V E A
Sbjct: 68 RDLRNTLLSKGSNLVVRRGKPEEVVADLIKQLGSVSSVAFHEEVASEELNVEKKVKEVCA 127
Query: 158 KVSLVDGKPKICLWQTPFY----DIKNLNDLPVSHNEFRKL--QRPLTSPI--------- 202
++ + K C T F+ ++ LP + EFRK + P+
Sbjct: 128 QMEV---KVHTCWGSTLFHRDDLPFPHMARLPDVYTEFRKAVESKSRVRPVFPTPDRLNS 184
Query: 203 LPPTLAGAKLEADWGPLPTFDELKE 227
LPP L G G +PT ++L++
Sbjct: 185 LPPGLEG-------GAIPTAEDLEQ 202
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR++D++GL A ++ + V+ ++ D IL+R + ++ ++ LE L+
Sbjct: 3 IFWHRRDLRINDNIGLAKAYTRDKKVIGVFCLDPNILNRDDIAPARVKYLLGCLEALKTK 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
++ GSDL+I E +I L E++KA +V+ +VE R V + L + S+
Sbjct: 63 YQKLGSDLLIFHNTPEEIIPSLAEKLKADAVYWNLDVEPFSRHRDKNVSQALKEKSI 119
>gi|452208194|ref|YP_007488316.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
gi|452084294|emb|CCQ37633.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
Length = 461
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++D R D+ GL AA++ VVP++V+D +L L + ++ L +E
Sbjct: 3 LFWHRRDPRTRDNAGLAAAARSGTVVPVFVYDSGLLKTMGARQRALYLRHVKALEGRYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL-VDGKP 166
SDL++R G E V+ +L E A +VF R V++ LA + D +
Sbjct: 63 LDSDLIVRAGDPEEVLVDLATEYDADTVFYNTHYRAARRNRQRAVEDALAAAGVGTDART 122
Query: 167 KICL 170
+ L
Sbjct: 123 DLVL 126
>gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Rhodobacterales bacterium HTCC2255]
gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Rhodobacterales bacterium HTCC2255]
Length = 465
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
+IWF++D R DH L AA S + ++P+++FD + + L + A+E +K L+
Sbjct: 8 IIWFRRDFRFSDHEALSAAHSSGRPIIPIFIFDEVFEALGAAPKWRLGL-AIECFKKKLE 66
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS+L++R G +++ELV E A V+
Sbjct: 67 RMGSNLILRRGNACEILQELVNETGALDVY 96
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL VA + Q VV ++ D IL R + + +I LE L++
Sbjct: 6 LFWHRRDLRISDNVGLAVARQQTQKVVGVFCLDPNILERDDVAPARVTYMIGCLESLQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
E GS+L+I F I +L E + A +VF +VE + ++
Sbjct: 66 YAEVGSELLILFNEPTTAIPKLAESLNAKAVFWNWDVEPYAKE 108
>gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104]
gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104]
Length = 442
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+ DH L AA+ V+ +V D R+ L+ + +L LR L
Sbjct: 3 ALLWFRRDLRLHDHPALSAAADSDEVLACFVLDPRLQRSSGPRRLQFLGDSLRVLRDELD 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+ L++ GR + I E+ + + A+SV E+ ++ A V LA V LV
Sbjct: 63 GR---LLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAALASVPLV 115
>gi|302877366|ref|YP_003845930.1| deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
ES-2]
gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
ES-2]
Length = 473
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEM---LELVIFALEDLR 102
++ WF++DLR+DDH L A K +AV ++VFD IL S++ +E + +L +L
Sbjct: 7 SICWFRRDLRLDDHAALYHALKNSRAVHCVFVFDTVILDALSDKHDRRVEFIWHSLYELN 66
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L++ GS L I G +I L E++ +VF + E
Sbjct: 67 ALLQQHGSTLQILHGNPVELIPHLARELEVQAVFCNRDYE 106
>gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
Length = 431
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNE---MLELVIFAL 98
+S + W ++DLR++D++GL A + A V+P+++FD IL + ++ ++ + AL
Sbjct: 2 KSKITLFWLRRDLRLEDNIGLHHALQSDAPVMPVFIFDTDILGKLEDKEDRRVDYIHQAL 61
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
D+ SLK+ S L +G+ + R+L EE SVF + E
Sbjct: 62 TDINISLKKYHSKLNTYYGKPIEIFRKLSEEYDIESVFCNRDYE 105
>gi|448336574|ref|ZP_21525671.1| deoxyribodipyrimidine photolyase [Natrinema pallidum DSM 3751]
gi|445628896|gb|ELY82195.1| deoxyribodipyrimidine photolyase [Natrinema pallidum DSM 3751]
Length = 469
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
V W ++DLR D+ GL AAS + VVPL+V D +L S + ++ ALE LR +
Sbjct: 3 VHWHRRDLRPGDNRGLARAASADEPVVPLFVLDPSVLEHASPVRVACLLEALESLRSWYR 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ-----MMAIVDETLAKVSL 161
GSDL++ G V+ + A +V E+ R+ A+ DE + S+
Sbjct: 63 AHGSDLLVVRGEASTVVPRVATTHDAATVVWNEDYSGLARERDQAVRTALADEGITAESV 122
Query: 162 VDG 164
D
Sbjct: 123 HDA 125
>gi|397665892|ref|YP_006507429.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395129303|emb|CCD07533.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 47 AVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHR--ILSRYSNEMLELVIFALEDLRK 103
A++WF+QDLR+ D+ + A ++ V+PLY++D + +L + L + AL K
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACFHHEIVIPLYIYDDKCSVLGQAQAWWLHHSLIALG---K 60
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
SL +QG L++R G + +I ELV + SV+
Sbjct: 61 SLNQQGLSLVLRKGSPQEIILELVAQYGVESVY 93
>gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis]
Length = 726
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 65 AASKYQAVVPLYVFD--------HRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF 116
A + +VPLY FD H L + L ++ ++ DLRK+L QGS+L++R
Sbjct: 547 AQRNAEHIVPLYCFDPRHYAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNLIVRR 606
Query: 117 GRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQT-- 173
G+ E V+ L++++ + S A +EEV + V + A++ + K C T
Sbjct: 607 GKPEEVVASLIKQLGSVSTVAFQEEVTSEELNVEKRVKDVCAQLKV---KVHTCWGSTLY 663
Query: 174 -----PFYDIKNLNDLPVSHNEFRKL--QRPLTSPILPPT--LAGAKLEADWGPLPTFDE 224
PF+ I L D+ + +FRK + P+LP L + G +PT ++
Sbjct: 664 HRDDLPFHHISRLPDV---YTQFRKAVESQSRVRPVLPSPERLKPLPQGLEEGAIPTAED 720
Query: 225 LKE 227
L++
Sbjct: 721 LEQ 723
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHR--ILSRYSNEMLELVIFALEDLRK 103
A++WF+QDLR+ D+ + A S ++ ++PLY++D + +L + L + AL K
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHETIIPLYIYDDKCSVLGQAQAWWLHHSLIALG---K 60
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
SL +QG L++R G +I ELV + SV+
Sbjct: 61 SLNQQGLSLVLRKGSPLEIILELVTQYGLESVY 93
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+ + WF+QDLR+ D+ LV A+K ++PLY+ D + L + + +L L+ +
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADHLIPLYILDDQ-LKMLGDAQRWWLHHSLSSLQTA 60
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L ++G+ L+++ G + V+ EL+++ K ++ E R++ ++ L +S+
Sbjct: 61 LSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPPLSV 117
>gi|386334355|ref|YP_006030526.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
gi|334196805|gb|AEG69990.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
Length = 548
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY------SNEMLELVIFALED 100
++WF++DLR DH L A ++ + V +VFD IL ++ LE + A+E
Sbjct: 54 LVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRDILDPLLARGLRADRRLEFIRAAVEA 113
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
LR +L+E G +L++ + I L +++ +VFA + E A+V + LA+
Sbjct: 114 LRGALREAGGELIVLHDHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAVVRDALAR-- 171
Query: 161 LVDGKPKICLWQTPFYDIKN 180
+ C W +D K+
Sbjct: 172 ------QPCAW----FDFKD 181
>gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
gi|417749286|ref|ZP_12397690.1| deoxyribodipyrimidine photolyase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440778546|ref|ZP_20957303.1| deoxyribodipyrimidine photo-lyase [Mycobacterium avium subsp.
paratuberculosis S5]
gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459275|gb|EGO38220.1| deoxyribodipyrimidine photolyase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436721022|gb|ELP45201.1| deoxyribodipyrimidine photo-lyase [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 442
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+ DH L AA+ V+ +V D R+ L+ + +L LR L
Sbjct: 3 ALLWFRRDLRLHDHPALSAAADSDEVLACFVLDPRLQRSSGPRRLQFLGDSLRVLRDELD 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+ L++ GR + I E+ + + A+SV E+ ++ A V LA V LV
Sbjct: 63 GR---LLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAALASVPLV 115
>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
(Silurana) tropicalis]
Length = 523
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 138/341 (40%), Gaps = 79/341 (23%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFD--HRILSRYSN------EMLEL 93
R+ + + DLR+ D+ L A + +VPLY FD H + Y N L+
Sbjct: 4 RARVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYGGTHYFNFPKTGPHRLKF 63
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEV-KATSVFAEEEVE----YHLRQM 148
++ +++DLR +LKE+GS+L++R G+ E +I LV+++ ++V EEV Y +
Sbjct: 64 LLESVQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLGNVSAVTLHEEVTVVPLYSYNPI 123
Query: 149 MAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK---LQRPLTSPI-LP 204
+ D + + G PF ++++ LP + +FRK Q + S +P
Sbjct: 124 LWPPDWSGLRYQTFWGSTLYHREDLPF---RHISSLPDVYTQFRKAAETQGKVRSTFQMP 180
Query: 205 PTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSK 264
L + G +PT ++F ++P LTD S
Sbjct: 181 DRLKPLPSGLEEGSVPTH---QDFDQQDP------------------LTDPRSAF----- 214
Query: 265 RNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLR 324
GG L L Y + E + +++ + L
Sbjct: 215 ------------------------PCCGGETQALQRLHHY--FWETNLVASYKDTRNGLI 248
Query: 325 NAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
+ ++T F P L LG IS R ++ + K+EKER A
Sbjct: 249 GID------YSTKFAPWLALGCISPRYIYEQIRKYEKERTA 283
>gi|448612276|ref|ZP_21662501.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
gi|445741508|gb|ELZ93008.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
Length = 482
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLRV D+ GL A++ V P++VFD +L + + ++ AL +LR S +
Sbjct: 3 VHWHRRDLRVADNRGLTTAAEAGPVAPVFVFDESVLEHAGSPRVRYLLDALAELRASYRS 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSV 135
GSDL++ G V+ + + A V
Sbjct: 63 LGSDLLVARGDPRTVVPAVATALDAERV 90
>gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291]
Length = 442
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+ DH L AA+ V+ +V D R+ L+ + +L LR L
Sbjct: 3 ALLWFRRDLRLHDHPALSAAADSDEVLACFVLDPRLQRSSGPRRLQFLGDSLRVLRDELD 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+ L++ GR + I E+ + + A+SV E+ ++ A V LA V LV
Sbjct: 63 GR---LLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARVRAALASVPLV 115
>gi|389871451|ref|YP_006378870.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
gi|388536700|gb|AFK61888.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
Length = 473
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 49 IWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKSL 105
+WF++DLR+ D+ L A + + V L+VFD ILS + + + L+DL++ L
Sbjct: 1 MWFRRDLRMTDNRPLFQALRQCETVFCLFVFDTHILSTLPPDDRRVAFIDACLDDLQRQL 60
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ GS L++R G + +I ++ + + +VFA + E
Sbjct: 61 QQAGSGLIVRHGTPQQMIPDIAQALNVEAVFAGSDYE 97
>gi|448343517|ref|ZP_21532441.1| deoxyribodipyrimidine photolyase [Natrinema gari JCM 14663]
gi|445622861|gb|ELY76302.1| deoxyribodipyrimidine photolyase [Natrinema gari JCM 14663]
Length = 469
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
V W ++DLR D+ GL AAS + VVPL+V D +L S + ++ ALE LR +
Sbjct: 3 VHWHRRDLRPGDNRGLARAASTDEPVVPLFVLDPSVLEHASPIRVACLLEALESLRSWYR 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ-----MMAIVDETLAKVSL 161
GSDL++ G + + A +V E+ R+ A+ DE +A S+
Sbjct: 63 AHGSDLLVVRGEASTAVPRVATAHDAATVVWNEDYSGLARKRDQAVRTALTDEGIAAESV 122
Query: 162 VDG 164
D
Sbjct: 123 HDA 125
>gi|427429184|ref|ZP_18919220.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
gi|425880864|gb|EKV29558.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
Length = 481
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 40 SKGRSGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFD--HRILSRYSNEMLELVI- 95
S + ++ F+ DLR+ DH L AA A V+PLYV D H + + + L +
Sbjct: 3 SSASAAPVIVLFRDDLRLADHRALSAAVGTGAPVIPLYVVDTAHGLGAGETARPLGGAVR 62
Query: 96 ----FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV-----EYHLR 146
++LE L + L+ GS L++R GR V+ ++ E A V E V E R
Sbjct: 63 WWLHYSLESLSEGLRALGSRLILRAGRPHEVVPQVAAETGAARVLLNETVVPTHRESARR 122
Query: 147 QMMAIVDETLAKVSLVDGKPKICLWQT 173
A+ D+ + V+L +P +W +
Sbjct: 123 MAAALEDQGVEAVTL---RPDALVWPS 146
>gi|171057933|ref|YP_001790282.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
gi|170775378|gb|ACB33517.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
Length = 493
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
AV+WFK+DLRV DH L A++ A + L++ + L + ++ L LR +
Sbjct: 4 AVVWFKRDLRVTDHAPLAEAARCDAALALFIIEPAWLDSPECHPRHVTWLLKCLAPLRDA 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L +G L++R G V+ L E T +F+ EE
Sbjct: 64 LAARGLPLLVRTGEAVEVLAALRREFACTRLFSHEET 100
>gi|448583039|ref|ZP_21646508.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445729996|gb|ELZ81588.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 482
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ V PL+VFD +L + ++ AL +LR + +E+G
Sbjct: 5 WHRRDLRVADNRGLATAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALAELRGAYRERG 64
Query: 110 SDLMIRFG 117
SDL++ G
Sbjct: 65 SDLLVARG 72
>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
Length = 472
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+ + WF+QDLR+ D+ LV A+K ++PLY+ D + L + + +L L+ +
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADHLIPLYILDDQ-LKMLVDAQRWWLYHSLSSLQTA 60
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L ++G+ L+++ G + V+ EL+++ K ++ E R++ ++ L +S+
Sbjct: 61 LSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPPLSV 117
>gi|379733707|ref|YP_005327212.1| Deoxyribodipyrimidine photo-lyase type I (fragment), partial
[Blastococcus saxobsidens DD2]
gi|378781513|emb|CCG01163.1| Deoxyribodipyrimidine photo-lyase type I (fragment) [Blastococcus
saxobsidens DD2]
Length = 199
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 46 SAVIWFKQDLRVDDHLGLV----AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDL 101
+A++WF++DLR+ DH L+ AA V+P++VFD R+ ++ L L
Sbjct: 3 TALLWFRRDLRLRDHPALLTARDAAGPDGDVLPVFVFDDRLWGPSGAPRRRFLLDCLAAL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L G L++R G ++ LV E ATSV + + R+ V+ L V
Sbjct: 63 DDDL---GGALVLRSGDPTRLLPALVHEAGATSVHVSADAGPYGRRRDEAVERALGDVPF 119
Query: 162 V 162
V
Sbjct: 120 V 120
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEM----LELVIFALED 100
+++IWF++ LR+ D+ L+ A K + V P++V D L + S ++ ++ +LED
Sbjct: 6 NSIIWFRKGLRLHDNPALLEACKDAKHVYPVFVLDPHFLQQSSYKVSVNRYNFLLESLED 65
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L++S + +GS L++ G+ E V + E T + E + E + + A V A+
Sbjct: 66 LQRSFQARGSRLLVLRGKPEEVFPRVFREWGVTQLCFEHDTEPYAKVRDAAVRRLAAEAG 125
Query: 161 LVDGKP-KICLWQTPFYDIKNLNDLPVSHNEFRKL 194
+ P L+ T +N P++ F KL
Sbjct: 126 VEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKL 160
>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
Length = 477
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRI------LSRYSNEMLELVIF 96
S + W ++DLR+ D+LGLVAA+ AV +YV D ++ L + L +I
Sbjct: 3 SSRVLFWHRRDLRLADNLGLVAATDISPAVTGVYVLDPQLINPTEHLPPMAPARLWFLIE 62
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+L +L++ +E GS L++ G V+ +L +++ A +V +VE + R+ D +
Sbjct: 63 SLVELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRDVEPYARER----DRQV 118
Query: 157 AKVSLVDGKPKICLW 171
AK DG+ + W
Sbjct: 119 AKKLQADGRKVVVDW 133
>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
Length = 472
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+ + WF+QDLR+ D+ LV A+K ++PLY+ D + L + + +L L+ +
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADHLIPLYILDDQ-LKMLGDAQRWWLHHSLSSLQTA 60
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L ++G+ L+++ G + V+ EL+++ K ++ E R++ ++ L +S+
Sbjct: 61 LSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPPLSV 117
>gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
Length = 433
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 47 AVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++ W ++DLR++DH L A K V+ L++FD ILS+ + + + +++L +
Sbjct: 6 SICWLRRDLRLEDHTALYHALKGPHPVLLLFIFDTNILSKLPVKDARVTFIYNTIKELNE 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE--------------------EEVEY 143
L + S ++++ G E EL+EE + SVF E + +
Sbjct: 66 QLAQHDSSIVVKHGSPEKAWTELMEEYQVKSVFTNHDYEPYAAERDDSLAEFLRSEHISF 125
Query: 144 HLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD--IKNLNDLPVSHNEFRKLQRPLTSP 201
H + I ++ ++ DGKP TP+Y ++ L+D + +K + L
Sbjct: 126 HTYKDQVIFEKD--EIVKADGKPYTVF--TPYYKQWLRKLDDFYIKPYPIKKYLKHLLKI 181
Query: 202 ILP--PTLAGAKLEADWGPLPTFD 223
P+L+ EA P+ D
Sbjct: 182 KRQHIPSLSDMGFEASAQKFPSED 205
>gi|451981013|ref|ZP_21929393.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
gi|451761776|emb|CCQ90640.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
Length = 483
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNE---MLELVIFALEDLR 102
A+ W ++DLR+ DH L AA++ + V+ ++VFD IL + ++ + + +L++++
Sbjct: 7 ALCWVRRDLRLRDHTALTAATRQAREVIVVFVFDTNILRKLEDKDDRRVNFIHHSLKEMQ 66
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
L ++G+DL++ G I L +E+K +VF + + + R+ IV++ L
Sbjct: 67 ARLVKKGADLLVCHGDPVLDIPRLAQELKVDAVFTNRDYDPYARKRDRIVEQKL 120
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHR--ILSRYSNEMLELVIFALEDLRK 103
A++WF+QDLR+ D+ + A S + V+PLY++D + +L + L + AL K
Sbjct: 4 ALMWFRQDLRLTDNPAFIEACSHHDIVIPLYIYDDKCSVLGQAQAWWLHHSLIALG---K 60
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
SL ++G +L++R G + +I ELV + SV+ E
Sbjct: 61 SLNQKGLNLVLRKGSPQEIIVELVAQHNVESVYWNRSYE 99
>gi|336173293|ref|YP_004580431.1| deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
gi|334727865|gb|AEH02003.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
Length = 434
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKS 104
+ WF++DLR+DD++G A K + V+P+++FD IL ++ + + L+++R++
Sbjct: 7 IFWFRRDLRLDDNVGFFEALKAEHPVLPIFIFDSEILDELPENDARVSFIFETLQNMRQT 66
Query: 105 LK-EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
L+ E S L + +G+ ++ + L+++ +V+ + E + ++
Sbjct: 67 LQDENNSSLAMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKE 110
>gi|33866289|ref|NP_897848.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33639264|emb|CAE08272.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 491
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRVDDH L+ A+ V+PLYV + + + S +L +LR++L
Sbjct: 6 IVWFKRDLRVDDHRPLLEAAARGPVLPLYVVEPELWQQPDASERQWLFCRESLLELRQAL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
E G L++R G V V+ + +++ EE
Sbjct: 66 AELGQPLVVRSGDVVQVLERARRQFGVDGLWSHEET 101
>gi|383775319|ref|YP_005459885.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
gi|381368551|dbj|BAL85369.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
Length = 443
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+AV+ F +DLRV D+ L A + + V+PLYV D L+ S + L DLR+
Sbjct: 3 TAVVLFTRDLRVHDNPALAEACAGAERVIPLYVLDP-TLAGLSGNRSRFLHQCLADLREQ 61
Query: 105 LKEQGSDLMIRFGR-VENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
L+E+G DL++R G V IR E AT A + Y R+ + DE
Sbjct: 62 LRERGGDLVVRTGDPVAEAIRVAREHDAATIHLAADVSGYARRRERRLTDE 112
>gi|325103845|ref|YP_004273499.1| deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
Length = 448
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
+++W ++DLR+DD L A K + V+PL++FD IL+ N+ V F L D++
Sbjct: 20 SLVWLRRDLRLDDQAALYHALKNETNVLPLFIFDTTILNLLPNKFDRRVDFIHQVLSDMK 79
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
K L S L++ +G +V EL++ +++ + E
Sbjct: 80 KELDAINSSLLVEYGDPIDVFSELIDRFTIKAIYTNRDYE 119
>gi|448565094|ref|ZP_21636065.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
gi|445715753|gb|ELZ67506.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
Length = 482
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ V PL+VFD +L + ++ AL +LR + +E+G
Sbjct: 5 WHRRDLRVADNRGLATAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALAELRGAYQERG 64
Query: 110 SDLMIRFG 117
SDL++ G
Sbjct: 65 SDLLVARG 72
>gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
Length = 472
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 19/171 (11%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
++WF++DLR+ DH L A+ V+P+++ D + + L + L+ ++L+
Sbjct: 8 LVWFRRDLRLSDHAALTEAASGGPVIPVFIRDALVDGLGTAPQWRLGL-GLKSFAEALEA 66
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD---- 163
+GS L++R G V+ ELV E A +V+ + V ETL K +D
Sbjct: 67 KGSRLILRSGPAVEVLSELVNETGAKAVYWSRAYDPDSVDRDTRVKETL-KGDGIDAQSF 125
Query: 164 -------------GKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSP 201
G+ TPF+ D+P + + LQ P T P
Sbjct: 126 TGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSSPSDLQAPATWP 176
>gi|116072905|ref|ZP_01470170.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
gi|116064431|gb|EAU70192.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
Length = 496
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIF--ALEDL 101
S ++WFK+DLR DH L ASK V+PLYV + + + + + + +L DL
Sbjct: 2 SALQIVWFKRDLRTVDHRPLFEASKCGPVLPLYVVEPELWQQPDSSSRQWLFCRESLIDL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+++L E G L++R G V +V+ + ++++ EE
Sbjct: 62 QRALAEFGQPLVVRRGDVADVLERARRQFGIDALWSHEET 101
>gi|78185218|ref|YP_377653.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78169512|gb|ABB26609.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 496
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIF--ALEDL 101
S ++WFK+DLR+ DH L+ ASK V+PLYV + R+ + + + + +L DL
Sbjct: 2 SALQIVWFKRDLRIVDHRPLIEASKRGPVLPLYVVETRLWQQPDSSKRQWLFCRESLLDL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+++L G L++R G V V+ + ++++ EE
Sbjct: 62 QRALATLGQPLVLRSGDVVEVLERARLQFGIDALWSHEET 101
>gi|412990437|emb|CCO19755.1| predicted protein [Bathycoccus prasinos]
Length = 558
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 142/374 (37%), Gaps = 88/374 (23%)
Query: 32 VSPTAAATSKGRSGS---AVIWFKQDLRVDDHLGLVAA-------SKYQAVVPLYVFDHR 81
+SP + G++ ++W + DLRV D+L L A S+ +VP Y+FD R
Sbjct: 1 MSPALSNVDDGKTKKKKRVILWHRNDLRVHDNLTLKEALTFCSESSELCELVPTYIFDPR 60
Query: 82 -ILS--------------------RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVE 120
LS + S E ++ ++ DL++ K GSDL+I+ G+ E
Sbjct: 61 WFLSDDAFDRSDQKRREKSLTNAPKCSQRRAEFLLESVLDLKERYKRLGSDLLIKIGKSE 120
Query: 121 NVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN 180
NV+ L +V V EV R + V G+ K+ +W Y ++
Sbjct: 121 NVLDALDADV----VVCSREVCEDERALERKVKRK------AKGELKL-VWDNTLYHYED 169
Query: 181 -----------LNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFV 229
LNDLP +F+ S + P L A+L D LK+F
Sbjct: 170 VFESGNCYQNGLNDLPTQFTQFKNKVESKVS-VRKPILNDAELS---------DGLKKF- 218
Query: 230 NENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNT 289
+P + E + L+D ++ + +N +P +
Sbjct: 219 -SSPSNVSEEEMQFVPTIEDIPLSDDARQMHAAIPK--DNSITPVY-------------S 262
Query: 290 VGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISR 349
GG + L +Q YL Y V + L + ES T P L LG IS
Sbjct: 263 FKGGESEALKRVQRYL-YETDAVATYFDTRNGMLEDLES-------TKLAPYLALGCISP 314
Query: 350 RGVHYEAIKFEKER 363
R + E K+EKER
Sbjct: 315 RFIENEIRKYEKER 328
>gi|424910085|ref|ZP_18333462.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846116|gb|EJA98638.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 479
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
++ ++WF++DLR+ D+L L+AA+ ++ V+P+Y+ + + + +L L
Sbjct: 4 KASPVIVWFRKDLRLSDNLALLAAADHKGPVIPVYIRE-KCCGALGRAQKWWLHHSLTAL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+LK+ GS L++ G E V+R L+ E A +VF
Sbjct: 63 HAALKKTGSRLVLASGDAEEVLRRLIAETGADTVF 97
>gi|448510374|ref|ZP_21615875.1| DNA photolyase FAD-binding protein [Halorubrum distributum JCM
9100]
gi|448522084|ref|ZP_21618349.1| DNA photolyase FAD-binding protein [Halorubrum distributum JCM
10118]
gi|445695941|gb|ELZ48037.1| DNA photolyase FAD-binding protein [Halorubrum distributum JCM
9100]
gi|445702358|gb|ELZ54312.1| DNA photolyase FAD-binding protein [Halorubrum distributum JCM
10118]
Length = 461
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W + D R D+ GL AA++ VVP +V+D +L+ + ++ L +E
Sbjct: 3 LFWHRGDARTRDNAGLAAAARKGEVVPTFVYDSDLLATIGARQRAFFLRHIKRLEARYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
GSDL++R G + V+ +L +E A +V+ + R V++ L +
Sbjct: 63 LGSDLVVRAGDPDEVLVDLADEYDAEAVYYNDHYRPARRNRGRAVEDALTGAGV 116
>gi|408785938|ref|ZP_11197678.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
gi|408488127|gb|EKJ96441.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
Length = 479
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDH--RILSRYSNEMLELVIFALE 99
++ ++WF++DLR+ D+L L+AA+ ++ V+P+Y+ + L R L +L
Sbjct: 4 KASPVIVWFRKDLRLSDNLALLAAADHKGPVIPVYIREKCCGALGRAQEWWLH---HSLT 60
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L +LK+ GS L++ G E V+R L+ E A +VF
Sbjct: 61 ALHAALKKTGSRLVLASGDAEEVLRRLIAETGADTVF 97
>gi|307110914|gb|EFN59149.1| hypothetical protein CHLNCDRAFT_56756 [Chlorella variabilis]
Length = 444
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEM--- 90
A GR ++WF+ DLR+ D+ L A ++ +++P+Y FD R +
Sbjct: 99 AAPGCGAGRR-PGIVWFRGDLRLHDNEALARAQAECSSLLPVYCFDPREYGKSPQGYDKT 157
Query: 91 ----LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
+ + A+ DLR +L+ GS+L++R GR E V+ ELV A +V+ EV Y
Sbjct: 158 GPYRAQFLAEAVADLRAALRAAGSELVVRVGRPEEVVGELVRRTGAGAVYCHTEVAYE 215
>gi|187927713|ref|YP_001898200.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
Length = 518
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY------SNEMLELVIFALE 99
++WF++DLR DH L A ++ + V ++VFD IL ++ +E + ++E
Sbjct: 20 GLVWFRRDLRHFDHAALHYALRHCREVYCVFVFDRDILDALLARGLQADRRIEFIRASIE 79
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LR +L+E G DLM+ + I E+ ++ +VFA + E + V + LA+
Sbjct: 80 ELRSALREAGGDLMVVHDHPRHAIPEIARKLNIEAVFANHDEEPSAQARDEAVRKVLAQ- 138
Query: 160 SLVDGKPKICLWQTPFYDIKN 180
+ C W +D K+
Sbjct: 139 -------QPCAW----FDFKD 148
>gi|433426547|ref|ZP_20406897.1| deoxyribodipyrimidine photolyase, partial [Haloferax sp. BAB2207]
gi|432196970|gb|ELK53384.1| deoxyribodipyrimidine photolyase, partial [Haloferax sp. BAB2207]
Length = 77
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL A++ V PL+VFD +L + ++ AL +LR + +E+G
Sbjct: 5 WHRRDLRVADNRGLATAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALSELRDAYRERG 64
Query: 110 SDLMIRFG 117
SDL++ G
Sbjct: 65 SDLLVARG 72
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR D+ L AA++ +V+P +VFD +L S + ++ +L +LR +E
Sbjct: 3 VHWHRRDLRAADNRSLSAAAETGSVIPAFVFDPAVLEYASPPRVAFMLESLSELRAWYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSV 135
+GSDL++ G + + + E A SV
Sbjct: 63 RGSDLVVATGDPRDELPRIAREHDAESV 90
>gi|336476980|ref|YP_004616121.1| deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
gi|335930361|gb|AEH60902.1| Deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
Length = 457
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR---YSNEMLELVIFALEDLRKSLK 106
F++DLR+DD+ L+ A + AV+P ++FD + +S + +I +L DL++
Sbjct: 12 FRRDLRIDDNTALINALEQSDAVIPCFIFDPAQIKNNEYFSKSAFQFMIESLRDLKQQFD 71
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
++ S L + +G +VIR L EV +VF ++
Sbjct: 72 KRNSHLYLFYGDSTDVIRNLKHEVDPEAVFLNKD 105
>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
Length = 480
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDH--RILSRYSNEMLELVIFALE 99
++ ++WF+QDLR+DD+ L+AA++ + VV ++VFD + + M + +L+
Sbjct: 3 KTSPIIMWFRQDLRLDDNPALIAAAESGKPVVAVFVFDEASEGIRKLGGAMRWWLHHSLK 62
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L K L G DL++R G VI +L +EV A +V
Sbjct: 63 SLTKDLGALGVDLILRRGPGAEVIFDLAKEVGAENV 98
>gi|448470029|ref|ZP_21600376.1| deoxyribodipyrimidine photolyase [Halorubrum kocurii JCM 14978]
gi|445808474|gb|EMA58540.1| deoxyribodipyrimidine photolyase [Halorubrum kocurii JCM 14978]
Length = 510
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++DLR+ D++GL AA+ V +VFD +L S+ + ++ L LR ++
Sbjct: 3 LFWHRRDLRLADNVGLAAAADRDEVAAAFVFDPDVLDHASDVRVRRLLDGLAALRAEYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSV 135
+GSDL++ G E V+ EL + A V
Sbjct: 63 RGSDLLVARGDPEVVLPELAAALDAERV 90
>gi|347536503|ref|YP_004843928.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
gi|345529661|emb|CCB69691.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
Length = 428
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 90/192 (46%), Gaps = 30/192 (15%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+ WF++DLR D++GL A + Q+V P+++FDH IL + ++ ++ + +L+ +
Sbjct: 2 TIFWFRRDLRWTDNVGLYHALQENQSVFPIFIFDHNILQQLEKNDARVDFIHDSLQKMND 61
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE----------YHLRQ-----M 148
++ S + +G + +EL+ TSV+ ++ E Y+L Q +
Sbjct: 62 EFQKYNSSIATFYGDPIEIWKELITNHNITSVYINKDYEPAARERDKKIYYLLQEHQIPL 121
Query: 149 MAIVDETLAKVSLV---DGKPKICL------WQTPFYDIKNLNDLPVSHNEFRKLQRPLT 199
A D+ + + + + DG P + W+ F KNL ++ S + + LQ P +
Sbjct: 122 KAYKDQVIFEKNEIVKEDGSPYVVFTPYSKKWKQKF--DKNLINVAYSEDYLQHLQ-PHS 178
Query: 200 SPILPPTLAGAK 211
P L G K
Sbjct: 179 YPFLSLEKIGFK 190
>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
Length = 472
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
++WF++DLR+ DH L A+ V+P+++ D + + L L R +L E
Sbjct: 9 LLWFRRDLRLSDHPALTQAAARGPVIPVFIHDDSVAGLGAAPKWRLGE-GLAVFRDALAE 67
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPK 167
+G+ L++R G V+ L++E AT+V+ + AI ++ K +L D +
Sbjct: 68 RGARLILRRGPAREVLERLIDETGATAVYWTRAYDPD-----AIERDSRVKAALADRGTE 122
Query: 168 IC 169
C
Sbjct: 123 AC 124
>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 478
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ ++WF+QDLRV D+ L A++ V+P+Y+ + S + + + L +L
Sbjct: 2 TTIVWFRQDLRVSDNPALHEATRRGPVLPVYILETPDQSGDEHPLGGASRWWLHHSLAAL 61
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
KE L+ G ++I ELV+E A +V+ E H + + + E+L K L+D K
Sbjct: 62 KEDLPGLVFLRGSARHLIPELVQETGADAVYWNRCYEPHAIERDSALKESL-KTDLIDAK 120
>gi|390167728|ref|ZP_10219708.1| deoxyribodipyrimidine photo-lyase [Sphingobium indicum B90A]
gi|389589593|gb|EIM67608.1| deoxyribodipyrimidine photo-lyase [Sphingobium indicum B90A]
Length = 458
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDL 101
S ++WF+QDLR+ D L AA + V+PLYV D + ++ + +L L
Sbjct: 2 SDPVLLWFRQDLRLGDQAALAAAVQEGPVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L+++GS L++R G + I ++ EE A V A E R + + L + L
Sbjct: 62 DDDLRKKGSRLVLRQGNCVDQIVQIAEETGARRVHALHHYEPWWRNAEKALGKRL-DLCL 120
Query: 162 VDG 164
DG
Sbjct: 121 HDG 123
>gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens]
Length = 526
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 44/217 (20%)
Query: 37 AATSKGRSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILS----------- 84
AAT+K + ++W + +LRV D+ L AA++ V+P+YV D R+
Sbjct: 5 AATAKP---TTIVWLRDELRVHDNALLAEAAARGGPVLPVYVLDDRVFDAAATSESGGSR 61
Query: 85 RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKA-TSVFAEEEVEY 143
+ + + AL+DLR +L +GS L++ GR +V+ L V +V +
Sbjct: 62 KCGAKRARFTLEALDDLRATLGARGSGLVVERGRPADVLAGLCAAVGGDATVLCSDAACS 121
Query: 144 HLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEF----RKLQRPLT 199
R+ A V AKV+ P +W+ Y ++L + H+ F K+++ T
Sbjct: 122 EERKDEAAV----AKVA-----PLAKVWEGTLYHPEDLRGVAF-HDLFTAWRTKVEKAGT 171
Query: 200 ---------SPILPPTLAG--AKLEADWGPLPTFDEL 225
+ LP AG AKL A PLPT D L
Sbjct: 172 RVRGDVFPKAATLPAPPAGVDAKLAA---PLPTLDAL 205
>gi|294084365|ref|YP_003551123.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663938|gb|ADE39039.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 515
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
V+WFK+DLRV DH LVAAS AV+P+YV + + ++ S + L L +SL
Sbjct: 3 VVWFKKDLRVWDHAPLVAASAAGAVLPIYVVEPALWAQPDMSYRHYAFLGETLASLDESL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L+I G + +V+ + ++ T++++ EE
Sbjct: 63 TKLGQPLVIYAGDMPSVLAGIHQKYGITALYSHEET 98
>gi|384099269|ref|ZP_10000358.1| deoxyribodipyrimidine photo-lyase [Imtechella halotolerans K1]
gi|383833250|gb|EID72715.1| deoxyribodipyrimidine photo-lyase [Imtechella halotolerans K1]
Length = 437
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++ WF++DLR DDH L A + V+P+++FD ILS++ ++ + + L++L K
Sbjct: 8 SICWFRRDLRWDDHTALWHALQSNFPVLPIFIFDPEILSQFPENDSRVHFIYNKLQELNK 67
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+ + + +G VE+V L++E V+ E+ E
Sbjct: 68 LVSIENRGIAQYYGTVESVFNHLLKEFDIQGVYTNEDYE 106
>gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
Length = 514
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-----AVVPLYVFDHRILSRYSNEMLELVIFALEDLR 102
+ W ++DLRV D++GL AA+ + P++VFD +L S+ + ++ L LR
Sbjct: 3 LFWHRRDLRVADNVGLAAATGTRDDGRGPAAPVFVFDPDVLDHASDVRVRRLLDGLAALR 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+++GSDL++ G E V+ EL + A V
Sbjct: 63 DDYRDRGSDLLVARGAPETVLPELAAALDAERV 95
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALED 100
S + W ++DLR+ D++GL AS+ Q VV ++ D IL R ++ + +I L+
Sbjct: 2 SNLILFWHRRDLRISDNVGLTQASQEGQTVVGIFCLDENILKRDDIASARVTYMIGCLQH 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L+K K+ GS L+I G+ I +L ++A +V+ +VE + R+ V E L +
Sbjct: 62 LQKRYKQIGSQLLIMSGKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAAN 121
Query: 161 L 161
+
Sbjct: 122 I 122
>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
Length = 433
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY---SNEMLELVIFALEDLR 102
++ WF++DLR+ D+ L A + V+PL++FD IL S+ + + L ++
Sbjct: 5 SIFWFRRDLRLYDNTALYYAIQENIPVLPLFIFDSEILDDLKDKSDARVNFIHDQLTEIN 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK--VS 160
LK+ GS ++I+ G+ E V + L++E +VF + E + + +D L + +
Sbjct: 65 DQLKKIGSGVLIKHGKPEEVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDNILQQKGIG 124
Query: 161 LVDGKPKICL 170
D K +
Sbjct: 125 FYDFKDHVIF 134
>gi|163846298|ref|YP_001634342.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222524057|ref|YP_002568527.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163667587|gb|ABY33953.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222447936|gb|ACM52202.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 510
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKSL 105
++WFK+DLR+ DH L AA+ V+PLY+ + ++ ++ + L +LR +L
Sbjct: 5 LVWFKRDLRLHDHPALSAAAARGPVLPLYIVEPSLIHAPDFAARHWTFIRGCLVELRANL 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++R G V+ LV +++A EE
Sbjct: 65 ARLGQPLVVRVGEAVEVLDHLVSTWPIEAIWAHEET 100
>gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
Length = 520
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 44/221 (19%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS----------RYSNEMLELVI 95
+A++WF+ DLRV D+ L AS+ + + +Y FD R RY
Sbjct: 3 TALVWFRTDLRVRDNRALAVASEAERLRCVYCFDPREFGSREYGGKDSFRYEKTGSHRTR 62
Query: 96 F---ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
F ++E LR SL+E+G++L++R GR E V+ L ++ A V R + V
Sbjct: 63 FLRESVEALRISLRERGNELVVRHGRPEEVVPSLAADIDADLVCFHALPTPEERAVERAV 122
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNE-------FRK------------ 193
E LA +W Y + +D+PV E FR+
Sbjct: 123 TERLADPETDVDADVESIWGHTLY---HPDDVPVPVAEIDDTFTTFRQTVERSDADVRPT 179
Query: 194 LQRPLTSPILPP--TLAGAKL-------EADWGPLPTFDEL 225
+ P T P +P T AG + E D G +P+F +L
Sbjct: 180 VDTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADL 220
>gi|118472574|ref|YP_886913.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
155]
gi|399986929|ref|YP_006567278.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
155]
gi|118173861|gb|ABK74757.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
155]
gi|399231490|gb|AFP38983.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
155]
Length = 452
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR DH ++ A++ A V+ YV D R+ + L + AL DLR+ L
Sbjct: 4 LLWFRRDLRCADHPAVLDAAQGDADVLACYVLDPRLTGSSGDRRLAYLYGALRDLREQL- 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAKVSLVDGK 165
G L++ GR E I EL + A SV + + LR+ A+ + +L D
Sbjct: 63 --GGKLLVTRGRPEQRIPELAAAIGAASVHVSGDFSPFGLRRDEAV------RAALADLP 114
Query: 166 PKICLWQT 173
+ L+ T
Sbjct: 115 GDVGLYAT 122
>gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase [Gramella forsetii KT0803]
gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
KT0803]
Length = 438
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 23/168 (13%)
Query: 41 KGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE------- 92
K + + ++WF+ DLR+ DH L A + ++ ++ +Y FD R + ++
Sbjct: 8 KQTTNTGLVWFRNDLRISDHEALTTACNSHEKIIGIYCFDPRHYLKDQFGFIKTGKFRSK 67
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF-------AEEEVEYHL 145
+I +E+L+K+L+ +L++ + E++I E++ E SV+ E +VE +
Sbjct: 68 FLIETIEELQKNLETLNIELLVFQEKPEDIIPEIISEYSVKSVYFQKEWTQEEHDVEKEV 127
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK 193
R+++ ++ + I PF + ND+P + EFRK
Sbjct: 128 RRLVNDIEFNSYYQQFLFHPEDI-----PF---SSFNDIPKVYTEFRK 167
>gi|329902812|ref|ZP_08273260.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327548607|gb|EGF33264.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 508
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+V+WFK+DLR+ DH L A+ V+ LYV + + + SN+ + ++ +L +L +
Sbjct: 4 SVVWFKRDLRLHDHAALTLAAARGPVLCLYVIEPAMWAAQDVSNQHYQFLLESLSELDAA 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L +G L + G V +++ L+ + +FA EE
Sbjct: 64 LARRGGCLHVAVGEVVDILDALLRQSPIADLFAHEET 100
>gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|404394317|ref|ZP_10986121.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|348613327|gb|EGY62917.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
Length = 518
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY------SNEMLELVIFALE 99
++WF++DLR DH L A ++ + V ++VFD IL S+ +E + ++E
Sbjct: 20 GLVWFRRDLRHVDHAALHYALRHCREVYCVFVFDRDILDALLARGLKSDRRVEFIRASIE 79
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LR +L+E G DL++ + I E+ ++ +VFA + E + V + LA+
Sbjct: 80 ELRGALRETGGDLIVVHDHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRKALAQ- 138
Query: 160 SLVDGKPKICLWQTPFYDIKN 180
+ C W +D K+
Sbjct: 139 -------QPCAW----FDFKD 148
>gi|254515582|ref|ZP_05127642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3]
gi|219675304|gb|EED31670.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3]
Length = 488
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLR 102
+ ++W K+DLR+ DH L AA + + + LY F+ +LS YS+ V +LED+R
Sbjct: 2 NTLVWLKRDLRLQDHAPLRAAIAAGSSTLLLYCFEPELLSDPHYSDRHWRFVWQSLEDMR 61
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+SL Q S L + G + L+++ + V++ EE
Sbjct: 62 RSLGPQASALHVCLGDPREIFARLLQDGQLQRVYSYEET 100
>gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
Length = 419
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+ V+ F +DLRV DH L AA ++ VVPL+V D ++ + + ++ AL +LR
Sbjct: 3 TTVVLFTRDLRVSDHPALHAAVTEADRVVPLFVVDPALVRVSARNRIAYLLEALAELRGL 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEY----HLRQMMAIVDETLAKVS 160
L+E+G +L++R G +V E A +V+ +V RQ+ V A V
Sbjct: 63 LRERGGELVVRQGDTVAETVRIVAEAGAQAVYLSADVSAAAVRRARQLTEAVRAAGAHVR 122
Query: 161 LVDG 164
G
Sbjct: 123 TFPG 126
>gi|346992466|ref|ZP_08860538.1| deoxyribodipyrimidine photo-lyase [Ruegeria sp. TW15]
Length = 477
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ D+ L AA + + +VP+++ D ++ + + L + LE K+L
Sbjct: 9 ILWFRRDLRLRDYPALTAAVRSGRPIVPVFILDDQVQALGAAPKWRLGL-GLEAFAKALD 67
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+ GS+L++R G V+++L+ E A +VF
Sbjct: 68 QIGSNLILRRGTALRVLKDLIHETGAGAVF 97
>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
Length = 428
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNE--MLELVIFALEDLRKS 104
+ WF++DLR++D++GL A + + V+P+++FD ILS+ + + + LE ++
Sbjct: 3 IFWFRRDLRLEDNVGLFHALNSTEDVLPIFIFDSEILSQLPKDDARVSFIHEQLEKIQSE 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
L + G L + G+ + +L+ E TSV+ + E + R+
Sbjct: 63 LNKIGKSLAVFHGKPIEIFTQLISENTITSVYTNHDYEPYARK 105
>gi|336322699|ref|YP_004602666.1| deoxyribodipyrimidine photo-lyase [Flexistipes sinusarabici DSM
4947]
gi|336106280|gb|AEI14098.1| Deoxyribodipyrimidine photo-lyase [Flexistipes sinusarabici DSM
4947]
Length = 460
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 18/144 (12%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKS 104
V+WF++DLR+ D+ L A + +P+++FD IL + ++ + + ++ L+
Sbjct: 3 TVLWFRRDLRIKDNPILSAPC--EVCLPIFIFDKNILGDFKANDPRITFIFNKVKKLKND 60
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL---RQMMAIVDETLAKVSL 161
L + G +L+I +G + + R L +E F+++ + + RQ+ I+D T+ + +
Sbjct: 61 LIKNGMNLVIFYGCPDEIFRYLKKEGYNKVFFSQDYTKRSIERDRQISEIIDTTIVRDNF 120
Query: 162 V---------DGKPKICLWQTPFY 176
+ DG P TPFY
Sbjct: 121 LFHPSDVRKNDGTPYKVF--TPFY 142
>gi|347528151|ref|YP_004834898.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
gi|345136832|dbj|BAK66441.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
Length = 458
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++W ++DLR+ D L+AA VVP+YV DHR + S L +L L
Sbjct: 6 ILWLRRDLRLGDQAALLAACAEGPVVPVYVLDDETPDHRRMGAASRWWLH---GSLASLA 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
L+ GS L++R GR + V+ L EV A V A E R + L V L
Sbjct: 63 GDLRASGSRLVLRRGRADEVLPALAREVGARRVHALHHYEPWWRNAERAIARVLDLV-LH 121
Query: 163 DG 164
DG
Sbjct: 122 DG 123
>gi|254462785|ref|ZP_05076201.1| deoxyribodipyrimidine photolyase family protein [Rhodobacterales
bacterium HTCC2083]
gi|206679374|gb|EDZ43861.1| deoxyribodipyrimidine photolyase family protein [Rhodobacteraceae
bacterium HTCC2083]
Length = 511
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRK 103
+++WFK+DLR DH L+AAS+ + V+PLY+ + + S + L DL
Sbjct: 6 SIVWFKRDLRNHDHAPLLAASQSNSPVIPLYIVEPEYWQQAFASRRHWHFIHDCLVDLNI 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+L + G L++R G V +V+ +L E+ V+ EE
Sbjct: 66 ALTDLGQPLIVRVGDVCDVLAQLHEQHGVGDVYMHEET 103
>gi|399029602|ref|ZP_10730423.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
gi|398072566|gb|EJL63778.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
Length = 431
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
WFK+DLR+DD++GL A + V+PL++FD IL ++ + + +LE + +
Sbjct: 7 TFFWFKRDLRLDDNIGLFHALQSNFPVIPLFIFDEDILDHLPKNDARVSFIYDSLEKINE 66
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L S ++I+ G+ V + L+ E VF ++ E
Sbjct: 67 QLSAIDSSILIKKGKTAEVWKSLLTEFDIQKVFFNKDYE 105
>gi|302838410|ref|XP_002950763.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
gi|300263880|gb|EFJ48078.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
Length = 97
Score = 54.7 bits (130), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEM-------LELVIFAL 98
AV+WF+ DLR+ D+ L A + +V+P+YV D R + N + ++ A+
Sbjct: 7 AVMWFRNDLRLHDNPVLDRACREGTSVLPVYVLDPRDYGKGPNGFGRTGPTRAQFIMDAV 66
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIREL 126
+DLR L+ GSDL++R G E V+ EL
Sbjct: 67 QDLRSRLRAAGSDLIVRMGHPEEVVPEL 94
>gi|387823921|ref|YP_005823392.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
gi|328675520|gb|AEB28195.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
Length = 499
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKSL 105
V+WFK+DLR++D+L L AS+ V+PLY+ + + + + + + LE+L L
Sbjct: 3 VVWFKRDLRINDNLALSLASEKGDVLPLYIIEPELWQQPDMSYRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L+I G + +L+++ ++++ EE
Sbjct: 63 TKLGQSLIIMVGDAVEIFEQLIQKYSVKNIWSHEET 98
>gi|254501390|ref|ZP_05113541.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222437461|gb|EEE44140.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 519
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV DH L AS V+PLYV + + + S + L+DL + L
Sbjct: 7 IVWFKKDLRVFDHEPLKRASLQGPVLPLYVIEPDLWDQPDMSARHYAFLSECLQDLDQEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++R G V +V+ + E + +++ EE
Sbjct: 67 SRLGKPLLLRTGSVTDVLTYISERYRIAGLWSHEET 102
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+LGL AA + VV ++ D IL+R + ++ ++ L++L +S
Sbjct: 6 LFWHRRDLRLTDNLGLAAAKEQTVKVVGVFCLDRDILTRDDIAPARVKYMMGCLQELSQS 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ-----MMAIVDETLAKV 159
+ GS L+I G VI +L + A +V+ +VE + R+ +A+ D+ +
Sbjct: 66 YGQIGSQLLITQGTPSQVIPQLASTLSAKAVYWNLDVEPYARKRDREVTIALQDKDITVQ 125
Query: 160 SLVDG---KPKICLWQ--------TPFYDIKNLNDLPVSHNEFRKLQ 195
+ D P L Q TPF+ +L D P + + LQ
Sbjct: 126 NFWDQLLHPPGAVLTQSEQPYKVYTPFWRNWSLQDKPTISPQIKNLQ 172
>gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 508
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDH-----RILSRYSNEMLELVIFAL 98
G +++W + DLRV D+ L AA + + +V LYV D R L + L + +L
Sbjct: 22 GPSIVWLRDDLRVADNPALHAAVERGEPIVVLYVLDEESDGIRPLGGAARWWLHM---SL 78
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L +SL+E GSDL++R G+ +V+ +LV E+ A +V
Sbjct: 79 SRLAESLRELGSDLVLRRGKAADVVDDLVREIGAGAVL 116
>gi|373953836|ref|ZP_09613796.1| DNA photolyase FAD-binding [Mucilaginibacter paludis DSM 18603]
gi|373890436|gb|EHQ26333.1| DNA photolyase FAD-binding [Mucilaginibacter paludis DSM 18603]
Length = 437
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
++ WF++DLR+DD+ GL A K V+PL++FD IL++ + V F +E L
Sbjct: 6 SIFWFRRDLRLDDNAGLYYALKGGHPVLPLFIFDTEILNQLEDREDARVTFIYQTIEALN 65
Query: 103 KSLKE-QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L+E Q S ++I++ E++ E +V+ + E + R A + E + ++
Sbjct: 66 NELREQQSSSILIKYNSTGQAWNEVLAEYDIAAVYTNHDYEPYARHRDAELKELFTQKNI 125
>gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
Length = 554
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 15/193 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKSL 105
V+WF++DLR+ DH L A+ AV+PL++ D +L + + + L L L
Sbjct: 5 VVWFRRDLRLGDHPALHQAASEGAVLPLFILDPALLQHPETGVARVGVLLDNLAALDHEL 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
K+ S L++R+G + +V+ +A +V A + E R + + D + G
Sbjct: 65 KQLASRLLVRWGEPAACLLSVVKAYRADAVLAHVDSE---RIVGRVRDARVQGQLQQAGV 121
Query: 166 PKICLWQTPFYDIKNLNDLPVSHNEFRKLQ--RPLTSP---ILPPTLAGAKLEADWGPLP 220
P W P ++ L P + + PL +P + PP AG E+ +P
Sbjct: 122 P--LRWIEPPGGLEELVPYPAYRRFWHGVMAAEPLPAPGRLLTPPPAAG---ESTAAAVP 176
Query: 221 TFDELKEFVNENP 233
+ + L + P
Sbjct: 177 SLEALGMVDDGKP 189
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-----------AVVPLYVFDHRILSRYSNEMLELVI 95
A++WF++DLR+ D+L L AA + Q A++P+Y+ R + ++
Sbjct: 99 AIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYILHRPKRQRCGPVRFQFLL 158
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
A+EDL +S+ + L++ G E V+R ++ T +F E V ++
Sbjct: 159 EAIEDLARSIAKLDGRLLVLSGDAEEVLRTVIAAWGVTDLFFEAGVAHY 207
>gi|383322099|ref|YP_005382952.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325268|ref|YP_005386121.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491152|ref|YP_005408828.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436419|ref|YP_005651143.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|97048023|sp|P77967.2|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|339273451|dbj|BAK49938.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|359271418|dbj|BAL28937.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274588|dbj|BAL32106.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277758|dbj|BAL35275.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958277|dbj|BAM51517.1| DNA photolyase [Bacillus subtilis BEST7613]
Length = 489
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 130/330 (39%), Gaps = 71/330 (21%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLE-------LVIFA 97
+ ++WF+ DLR+ DH L A K A+ +Y +D R ++ + + +
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQS 66
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+++L +SL++ G+ L++ G E VI ++ +++ A +++ EV Q V+ L
Sbjct: 67 VQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVT----QEELDVERNLV 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKLE 213
K + G W + ++L DLP +FRK I P A ++L
Sbjct: 123 KQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL- 181
Query: 214 ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSP 273
LP+ + E P + P
Sbjct: 182 -----LPSPNIKLELTAPPP------------------------------------EFFP 200
Query: 274 RKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGAS 333
+ D + +G G A L LQ Y + G D++E + + GA
Sbjct: 201 QINFDHRSVLAFQG-----GETAGLARLQDY--FWHGDRLKDYKETRNGMV------GAD 247
Query: 334 FATLFGPALCLGIISRRGVHYEAIKFEKER 363
+++ F P L LG +S R ++ E ++E+ER
Sbjct: 248 YSSKFSPWLALGCLSPRFIYQEVKRYEQER 277
>gi|410995660|gb|AFV97125.1| hypothetical protein B649_04055 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 456
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 20/168 (11%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDLRKSL 105
++WF++DLR +D+ L S+ V+PL++FD ILS + + + +L +L+ SL
Sbjct: 4 ILWFRRDLRTEDNPLL---SQEGNVLPLFIFDPNILSSLDADDRRISFIYHSLINLKTSL 60
Query: 106 KEQGSDLMIRFGRVENVIRELV-----EEVKATSVFAEEEVE-----YHLRQMMAIVDET 155
K+ G DL I +G+ V + L+ +EV A+ + +E HL + D
Sbjct: 61 KKMGLDLAIFYGKPSEVFQWLLLHDHYDEVCASGDYDRYALERDRQISHLLPFNYLHDTY 120
Query: 156 LAKVSLV---DGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTS 200
+ + V DG P TPFY+ + P +E+ +Q+ L S
Sbjct: 121 IFRSDEVVKNDGTPYQVF--TPFYNRAKILFTPFHMHEYLPVQQQLHS 166
>gi|397774714|ref|YP_006542260.1| DNA photolyase FAD-binding protein [Natrinema sp. J7-2]
gi|397683807|gb|AFO58184.1| DNA photolyase FAD-binding protein [Natrinema sp. J7-2]
Length = 469
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
V W ++DLR D+ GL AAS + VVPL+V D +L S + ++ ALE R +
Sbjct: 3 VHWHRRDLRPGDNRGLARAASTDEPVVPLFVLDPSVLEHASPIRVACLLEALESFRSWYR 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ-----MMAIVDETLAKVSL 161
GSDL++ G + + A +V E+ R+ A+ DE +A S+
Sbjct: 63 AHGSDLLVVRGEASTAVPRVATAHDAATVVWNEDYSGLARERDQAVRTALTDEGIAAESV 122
Query: 162 VDG 164
D
Sbjct: 123 HDA 125
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALED 100
+ S + W ++DLRV D++GL A ++ + +V L+ D IL++ + + ++ L+D
Sbjct: 44 TNSVIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLDTDILNQDNVAPARITYMLGCLQD 103
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
LR+S ++ G L+I G +I ++ + +K VF +VE + ++ V E L +
Sbjct: 104 LRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDNQVIEALQE 161
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALED 100
+ S + W ++DLRV D++GL A ++ + +V L+ D IL++ + + ++ L+D
Sbjct: 44 TNSVIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLDTDILNQDNVAPARITYMLGCLQD 103
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
LR+S ++ G L+I G +I ++ + +K VF +VE + ++ V E L +
Sbjct: 104 LRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDNQVIEALQE 161
>gi|448578594|ref|ZP_21644014.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445725772|gb|ELZ77392.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 478
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL A+ V PL+VFD +L + + ++ AL +LR S + +G
Sbjct: 5 WHRRDLRTADNRGLATAAAEDVVAPLFVFDDAVLEHAGSPRVRYMLDALAELRASYRSRG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSV 135
SDL++ G +++ + + + + V
Sbjct: 65 SDLLVARGDPRSLVPAVADALDSDRV 90
>gi|407705549|ref|YP_006829134.1| hypothetical protein MC28_2313 [Bacillus thuringiensis MC28]
gi|407383234|gb|AFU13735.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis MC28]
Length = 476
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L A+ D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSMGSASKWWLH---HAVIDVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E IR L+E+++ T+V+
Sbjct: 63 ALGSTLIIRKGRTEEEIRSLIEQLRITAVY 92
>gi|441207175|ref|ZP_20973415.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis MKD8]
gi|440628072|gb|ELQ89874.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis MKD8]
Length = 452
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR DH ++ A++ A V+ YV D R+ + L + AL DLR+ L
Sbjct: 4 LLWFRRDLRCADHPAVLDAAQGDADVLACYVLDPRLTGSSGDRRLAYLYEALRDLREQL- 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAKVSLVDGK 165
G L++ GR E I EL + A SV + + LR+ A+ + +L D
Sbjct: 63 --GGKLLVTRGRPEQRIPELAAAIGAASVHVSGDFSPFGLRRDEAV------RAALADLP 114
Query: 166 PKICLWQT 173
+ L+ T
Sbjct: 115 GDVGLYAT 122
>gi|403375006|gb|EJY87472.1| hypothetical protein OXYTRI_02690 [Oxytricha trifallax]
Length = 579
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/389 (20%), Positives = 164/389 (42%), Gaps = 85/389 (21%)
Query: 48 VIWFKQDLRVDDHLGLVAA----SKYQAVVPLYVFDHRILSRYSNEMLEL---------V 94
++WF+ DLR+ D+ L A +K + ++P+Y FD R L+R + L +
Sbjct: 71 ILWFRNDLRLHDNAILNYAVSQKTKNKEIIPVYSFDQRFLNRKVKKYDTLKCGLVRTRFI 130
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
+ + ++ R L++ GS L++ + E+ + +L+++ ++ ++E+ + +A+ E
Sbjct: 131 LESAQNFRDRLEKIGSKLLVTMDKPEDFLPQLIDKDVDNTIVYQDEI---CSEELAV--E 185
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRPLTSPILPPTLAGA 210
K S +G+ + LW + Y + +L +LP + +FR+ + + P A
Sbjct: 186 KAVKES-CEGQKIVNLWGSTVYHVDDLGFHPKELPHIYGKFREKTADVK---IRPLFAQP 241
Query: 211 KLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQ 270
K G LP + E +EE+ + + +++ K
Sbjct: 242 KS----GQLP-------YAKEPSPLMEEASKFMPTLKDFGFTKEQIEK------------ 278
Query: 271 HSPR-KRLDKSFFVTDKGNTVGGGTNAV--LNALQAYLRYLEGTVRDDWQELQEKLRNAE 327
P+ KR F VGG NAV LN Y+ GT + +
Sbjct: 279 --PKDKRACYDF--------VGGEDNAVKRLN------EYIMGT-----KSVGSYAITRN 317
Query: 328 SRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCS 387
+ GA++++ F P L G +S + ++Y+ +FEK S + D +
Sbjct: 318 NLIGANYSSKFSPWLACGALSPKYIYYQVKEFEKTHK---------SNESTKVFLDELFW 368
Query: 388 MEWYWLMSLR---SLRSNEGVYSTRIWRW 413
++Y +++ + S+ G+Y+ + W
Sbjct: 369 RDFYRFWAIKYGNQMFSSYGIYNREYYNW 397
>gi|332662341|ref|YP_004445129.1| deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
1100]
gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
1100]
Length = 449
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLELVIFA---LEDLRK 103
+ WF++DLR+ D+ GL A K V+PL++FD IL + V F + +L+
Sbjct: 6 LFWFRRDLRLQDNAGLYHALKSNFPVLPLFIFDTEILDELDDPEDARVAFLHQRITELQA 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK----- 158
L+ GS +++R+G+ V E++++ V+ + E Q V LA+
Sbjct: 66 ELEHLGSSMLVRYGKPAEVWPEILQDYLVAEVYTNHDYEPRAIQRDEAVQNLLAQQNIPY 125
Query: 159 -------------VSLVDGKPKICLWQTPF 175
V+ +DGKP TP+
Sbjct: 126 FSFKDQVIFEKLEVTKLDGKPYTVF--TPY 153
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ DH GL AA K VV ++ D IL + + + +I L++L+K
Sbjct: 6 LFWHRRDLRISDHKGLAAAREKSSQVVGVFCLDPNILDQDDVAPARVTYMIGCLQELQKQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
++ GS L+I G+ + I +L + ++A +V+ +VE + + V E L +V++
Sbjct: 66 YEKVGSQLLILQGQPSSAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEVNI 122
>gi|443320341|ref|ZP_21049448.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
gi|442789946|gb|ELR99572.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
Length = 478
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
+ W ++DLRV D+LGL +A S V+ + FD +LS + + +I L+ L+
Sbjct: 6 IFWHRRDLRVSDNLGLSLACSDSSRVIGCFCFDLDLLSGDDIAPARISYLIGCLQLLQAQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG 164
+E+G +L++ G+ +I L +++A V+ +VE + ++ +V L + +V
Sbjct: 66 YQERGGELLLLRGKPTEIIPRLGIQLQARGVYWNLDVEPYAKERDRLVQRELEQQKIVVK 125
Query: 165 KPKICLWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSPILPPTL 207
L Q+P + D + F K Q +SP+ PP L
Sbjct: 126 TVWDQLLQSPGQVLTKSGDPYQVYTPFWKNWSQHTKSSPVAPPAL 170
>gi|393770609|ref|ZP_10359088.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. Rr 2-17]
gi|392723956|gb|EIZ81342.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. Rr 2-17]
Length = 465
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD-----HRILSRYSNEMLE 92
A+ S ++W ++DLR+ + A+ V+P+YV D H + S L
Sbjct: 3 ASPAPSSHPTIVWLRRDLRLCNQPAFAEAAGKGPVIPVYVLDDEAARHHAMGGASRWWLH 62
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+ L K+L+ +GS L++R GR E V+ L EE A + A E
Sbjct: 63 ---HSLDSLDKALRAKGSRLILRKGRSETVLASLAEETGAREIHAVHHYE 109
>gi|448455076|ref|ZP_21594402.1| deoxyribodipyrimidine photolyase [Halorubrum lipolyticum DSM 21995]
gi|445814191|gb|EMA64159.1| deoxyribodipyrimidine photolyase [Halorubrum lipolyticum DSM 21995]
Length = 526
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-----AVVPLYVFDHRILSRYSNEMLELVIFALEDLR 102
+ W ++DLRV D++GL AA+ + P++VFD +L S+ + ++ L LR
Sbjct: 3 LFWHRRDLRVADNVGLAAATGARDDDRGPAAPVFVFDPDVLDHASDVRVRRLLDGLAALR 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+++GSDL++ G E V+ EL + A V
Sbjct: 63 ADYRDRGSDLLVARGDPETVLPELAGALDADRV 95
>gi|148242284|ref|YP_001227441.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147850594|emb|CAK28088.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 503
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--Y 86
V S TA + S+ V+WFK+DLR DH L AS+ V+PL++ + ++
Sbjct: 7 VSSRSTTAESVSEPNQPLQVVWFKRDLRTIDHGALSQASRSGPVLPLFIVEPMFWAQPDA 66
Query: 87 SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
S E +L +LR++L G L+IR G V++ L + +++ +E
Sbjct: 67 SARQWEFCAESLAELREALAALGQPLVIRTGEALAVLKALHRQRGIAQLWSHQET 121
>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
Length = 490
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 134/334 (40%), Gaps = 82/334 (24%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS-------RYSNEMLELVIFALE 99
++W + DLR+ DH L A++ A ++P+Y FD R + + + +I +
Sbjct: 4 LLWLRNDLRLHDHEPLHRATEQGADIIPVYCFDPRQFQATSFGFPKTGSYRAQFLIETVA 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV---EYHLRQMMAIVDETL 156
L+ L+ +GS+L+I G+ E I LV+ +V+ EEV E + Q + V L
Sbjct: 64 ALKAELRSRGSNLVILQGKPEEEIPALVKAFDIAAVYWHEEVTPEEIEVEQRLETVLNQL 123
Query: 157 AKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKL 212
S V W Y +L + LP +FRK +
Sbjct: 124 KVTSEV-------YWGATLYHPDDLPFEVSQLPEVFTQFRK-----------------AI 159
Query: 213 EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHS 272
E + PTF P KL +L N + + + LS LG
Sbjct: 160 EKNTQVFPTF--------PTPEKLP---SLPNEIEPGELPS--LSDLGLE---------- 196
Query: 273 PRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRD-- 330
R +D+ + K GG + L+ LQ Y + LQ R E+R+
Sbjct: 197 -RTPIDEKGVLPFK-----GGESKGLDRLQHYFWNAD--------RLQ---RYKETRNGM 239
Query: 331 -GASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
GA +++ F P L G +S R V+ E ++E+ER
Sbjct: 240 LGADYSSKFSPWLANGSLSPRRVYEEVQRYERER 273
>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
Length = 481
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
+ W ++DLR+ DH GL AA+ + VVP+++ D + + + L + LE +L
Sbjct: 8 IYWLRRDLRLADHPGLAAAAASGRPVVPVFIHDESVAALGAAPAFRLGL-GLERFGATLG 66
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
+ GS L++R G V++ L+ E A +V+ E
Sbjct: 67 DMGSRLILRRGSAPAVLQALIAETGAGAVWWTRE 100
>gi|423447663|ref|ZP_17424542.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
gi|401130074|gb|EJQ37743.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
Length = 476
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L A+ D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSMGSASKWWLH---HAVIDVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E IR L+E+++ T+V+
Sbjct: 63 ALGSTLIIRKGRTEEEIRSLIEQLRITAVY 92
>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|423379068|ref|ZP_17356352.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|423442112|ref|ZP_17419018.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|423534525|ref|ZP_17510943.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
gi|423540200|ref|ZP_17516591.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|423546432|ref|ZP_17522790.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|423623773|ref|ZP_17599551.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|401173735|gb|EJQ80947.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|401181001|gb|EJQ88155.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|401257696|gb|EJR63893.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|401633514|gb|EJS51291.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|402416068|gb|EJV48387.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|402462942|gb|EJV94645.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
Length = 476
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L A+ D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSMGSASKWWLH---HAVIDVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E IR L+E+++ T+V+
Sbjct: 63 ALGSTLIIRKGRTEEEIRSLIEQLRITAVY 92
>gi|448602427|ref|ZP_21656483.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445747942|gb|ELZ99396.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 482
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLRV D+ GL AA++ V PL+VFD +L + ++ AL +LR++ +E+G
Sbjct: 5 WHRRDLRVADNRGLAAAAEAGPVAPLFVFDRDVLDHAGAPRVRYLLDALAELREAYRERG 64
Query: 110 SDLMIRFGRVENVI 123
SDL++ G V+
Sbjct: 65 SDLLVARGDPRTVV 78
>gi|428774053|ref|YP_007165841.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
gi|428688332|gb|AFZ48192.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
Length = 476
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+LGL A + + ++ + D ILSR + + ++ LE+LRK
Sbjct: 6 LFWHRKDLRITDNLGLHEAYQNSKKIIGFFCLDPDILSRDDIAPARVTYMLGCLEELRKK 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+E+G ++ +N+I +L +KA S++ ++VE + R D LAK
Sbjct: 66 YQERGGTFLVFKDSPQNIILKLAHNLKANSIYWNKDVEPYSRNR----DRELAKT 116
>gi|334132216|ref|ZP_08505977.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
gi|333442862|gb|EGK70828.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
Length = 483
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVV-PLYVFDHRILSRYSNEML------ELVIFALED 100
++WF++DLR+DDH L A + V ++VFD IL+ E L E + ++ +
Sbjct: 9 LVWFRRDLRIDDHAALYHALRAGGPVWCVFVFDTDILNELLAEGLSADRRVEFIHASVSE 68
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L +L+ G L++R GR +I L ++ +V A + E
Sbjct: 69 LDAALRALGGGLIVRHGRARGLIPRLARQLGVAAVLANRDYE 110
>gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101]
Length = 251
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLR---KS 104
V+WF++DLR+ DH L A AV+P++V D +L + + V F L +L+
Sbjct: 5 VVWFRRDLRLSDHAALSEACNQGAVLPVFVLDRDLLF-HPETAVARVAFMLNNLQALDAD 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L+++G L+IR G + ++V+ A V A + E
Sbjct: 64 LRQRGGRLLIRCGDPAEQLLQVVQLSGADGVIAHTDSE 101
>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
Length = 490
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 39 TSKGRSGSA--VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNEM-LELV 94
T+K + G A ++WF++DLR+ D+ L A + + VVP+Y+ D R + L +
Sbjct: 2 TTKAQDGPAPVILWFRRDLRLADNPALNKAHATGRPVVPVYIHDEGTAVRPAGAASLWWL 61
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+L L SL E+G+ L++R G E +R L+++ A +VF
Sbjct: 62 DKSLRALAGSLAERGATLILRRGDSETELRRLIDQTGADTVF 103
>gi|465501|sp|Q05380.1|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region;
AltName: Full=URF1
gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp. (PCC
6716)
gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.]
Length = 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLEL--VIFALEDLRKS 104
+ W ++DLR+ D+LGL AA ++ VV ++ FD +L + + ++ L+ L+++
Sbjct: 7 LFWHRRDLRLADNLGLYAARQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQALKEA 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+++G L++ G VI E+ +KAT+V E+VE + R+ +V TL + +
Sbjct: 67 YQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDLGIA 124
>gi|424814657|ref|ZP_18239835.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339758273|gb|EGQ43530.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 450
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ + DLR+ D+ GL AAS +P+Y+ D RI + L+ LRK ++
Sbjct: 3 IFLHRDDLRIHDNRGLDAASASGKTIPVYIDDPRIRDKTGTNKRAFREEGLQKLRKKYED 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVF 136
+GS L++R G+ + ++ ++EE +F
Sbjct: 63 RGSGLIVRKGKTGDELKSIIEERDVEEIF 91
>gi|440680804|ref|YP_007155599.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
gi|428677923|gb|AFZ56689.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
Length = 478
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ DH GL A + A VV ++ D IL R + + +I L+ L+K
Sbjct: 6 LFWHRRDLRISDHTGLAKAREQSAKVVGVFCLDPDILQRDDIAPARVTYMIGCLQALQKR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAK 158
+ GS L+I G +VI +L ++A +VF +VE Y + +A++D K
Sbjct: 66 YNQAGSQLLILQGNPVSVIPDLAAALQAKAVFWNWDVEPYSQTRDIAVIDSLTEK 120
>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
Length = 484
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVI-FALEDLRKSL 105
A++WF+ DLRV+D+ L+AAS ++ VVP+Y+ + +R + + +L L + L
Sbjct: 12 AIVWFRNDLRVNDNAALLAASSHKQVVPVYILEPAANTRAIGGARKWWLHHSLAKLGEKL 71
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+ G+ LM+ G +I LVE+ A +V+
Sbjct: 72 ADLGAPLMLMRGDPALLIAGLVEKTDAAAVY 102
>gi|313682739|ref|YP_004060477.1| deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
16994]
gi|313155599|gb|ADR34277.1| Deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
16994]
Length = 455
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 20/167 (11%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNE--MLELVIFALEDLRKSL 105
++WF++DLR++D+ L + V+P+++FD ILS N+ + ++ AL +L+ SL
Sbjct: 4 ILWFRRDLRIEDNPLLSLEGE---VLPIFIFDPNILSSLQNDDRRVSIIYNALLNLKSSL 60
Query: 106 KEQGSDLMIRFGRVENVIRELV-----EEVKATSVFAEEEVE-----YHLRQMMAIVDET 155
+ +G DL + +G+ +V + L+ +EV A+ + +E HL ++ D
Sbjct: 61 QMRGLDLALFYGKPVDVFKWLLSRHHFDEVCASGDYDHYALERDREISHLLPFNSLDDTY 120
Query: 156 LAKVSLV---DGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLT 199
+ + + DG P + TPFY+ P EF +++ LT
Sbjct: 121 IFRPDEIVKNDGTPYLVF--TPFYNRAKSLFSPEHMREFIPVEQSLT 165
>gi|421900163|ref|ZP_16330526.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum MolK2]
gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum MolK2]
Length = 522
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 24/159 (15%)
Query: 34 PTAAATSKG-RSGS----AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY- 86
P++AA ++ R G+ ++WF++DLR DH L A ++ + V +VFD IL
Sbjct: 9 PSSAAQTRAYRIGAHFRRGLVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLL 68
Query: 87 -----SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
++ +E + A+E LR +L+E G +L++ + I L +++ +VFA +
Sbjct: 69 ARGLRADRRVEFIRAAVEALRGALREAGGELIVLHDHAHHAIPSLAQQLGVEAVFANHDE 128
Query: 142 EYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN 180
E A V + LA+ + C W +D K+
Sbjct: 129 EPAALARDAAVRDALAR--------QPCAW----FDFKD 155
>gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
Length = 528
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVF--DHRILSRYSNEMLELVIFALEDLRKS 104
V+WFK+DLR++DH L+AASK ++PLYV D+ S S + L DL +
Sbjct: 26 VVWFKRDLRINDHGPLLAASKLSLPILPLYVVEPDYWKKSFSSRRHWHFIHDCLTDLNTA 85
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L+I+ G V I + + ++A EE
Sbjct: 86 VSSLGQPLVIKVGDVCAAIENIHSDYNVQGIYAHEET 122
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEM----LELVIFALEDLR 102
+ W ++DLR+ D++GL AA K + +V L+ D IL+ SNE+ + ++ L++L+
Sbjct: 6 LFWHRRDLRISDNMGLAAARKQSSKIVGLFCLDPNILN--SNEVAPARVTYMLGCLQELK 63
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+S + GS L+I G I +L ++ T VF ++ E + R+ V++ L K +
Sbjct: 64 ESYSKIGSQLLIVRGEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQGIA 123
>gi|393764279|ref|ZP_10352891.1| deoxyribodipyrimidine photolyase [Alishewanella agri BL06]
gi|392604909|gb|EIW87808.1| deoxyribodipyrimidine photolyase [Alishewanella agri BL06]
Length = 502
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVF--DHRILSRYSNEMLELVIFALEDLRKS 104
++WFK+DLR+ DH L A+K AV+P+Y+ D+ S V AL L++
Sbjct: 3 LLWFKRDLRLTDHAALFHAAKQGTAVLPVYIVEPDYWQQPDVSLRHWAFVAEALTSLQQQ 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
L G L++ +G V+REL ++V++ +E
Sbjct: 63 LTTLGQPLLVYYGAATRVLRELCARFPISAVYSHQE 98
>gi|448529029|ref|ZP_21620344.1| deoxyribodipyrimidine photolyase [Halorubrum hochstenium ATCC
700873]
gi|445709735|gb|ELZ61559.1| deoxyribodipyrimidine photolyase [Halorubrum hochstenium ATCC
700873]
Length = 502
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAAS-------KYQAVVPLYVFDHRILSRYSNEMLELVIFALED 100
+ W ++DLRV D++GL AA+ ++VFD +L S+ + ++ L
Sbjct: 3 LFWHRRDLRVADNVGLAAATGAGVEGADRGPAAAVFVFDPDVLDHASDVRVRRLLDGLAA 62
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
LR +E+GSDL++ G ENV+ L E + A V
Sbjct: 63 LRDDYRERGSDLLVARGDPENVLPRLAEALDAERV 97
>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
Length = 518
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY------SNEMLELVIFALE 99
++WF++DLR DH L A ++ + V ++VFD IL ++ +E + ++E
Sbjct: 20 GLVWFRRDLRHVDHAALHYALRHCREVYCVFVFDRDILDALLARGLKADRRVEFIRASIE 79
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+LR +L+E G DL++ + I E+ ++ +VFA + E + V + LA+
Sbjct: 80 ELRGALREAGGDLIVVHDHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRKALAQ- 138
Query: 160 SLVDGKPKICLWQTPFYDIKN 180
+ C W +D K+
Sbjct: 139 -------QPCAW----FDFKD 148
>gi|85704991|ref|ZP_01036091.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
gi|85670313|gb|EAQ25174.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
Length = 528
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVI 95
A S G ++WFK+DLRV DH L A++ ++PLY+ + + S +
Sbjct: 28 AISCGMERPVILWFKRDLRVQDHPALSHAARLGPIIPLYIVEPEAWAEPDASERQYAFIC 87
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
LE LR L G L++R G V+ L + + + EE
Sbjct: 88 ECLESLRSDLAALGLSLVLRVGDAVTVLEALRADQGVAHLVSHEET 133
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVI-FALEDLRKS 104
A++WF+ DLR++D+ + A S +Q V+PLY++D + + S E + + +L L +S
Sbjct: 4 ALVWFRYDLRLNDNPAFIEACSHHQFVIPLYIYDGK--NSVSGEAQDWWLHHSLTSLSES 61
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L + G +L++R G +I +LV+++ +SV+
Sbjct: 62 LAQLGLNLILRKGDPFEIISDLVKKLSVSSVY 93
>gi|325981909|ref|YP_004294311.1| deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
Length = 434
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKS 104
V WF++DLR+DD++GL A + Q V+P+++FD IL+ ++ + + L+ LR
Sbjct: 7 VFWFRRDLRLDDNVGLSHALASGQPVLPVFIFDPSILTGLPENDARVTFIYDTLQTLRTQ 66
Query: 105 LKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L+E+ S + + +G V +++ T+V+A + E + R+ V E L S+
Sbjct: 67 LEERYSSSIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVCEWLKARSV 124
>gi|397170860|ref|ZP_10494270.1| deoxyribodipyrimidine photo-lyase [Alishewanella aestuarii B11]
gi|396087334|gb|EJI84934.1| deoxyribodipyrimidine photo-lyase [Alishewanella aestuarii B11]
Length = 502
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVF--DHRILSRYSNEMLELVIFALEDLRKS 104
++WFK+DLR++DH L A+K AV+P+Y+ D+ S V AL L++
Sbjct: 3 LLWFKRDLRLEDHAALFYAAKNGSAVLPVYIVEPDYWQQPDVSLRHWAFVSEALTQLQQQ 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L G L++ +G V+REL ++V++ +E
Sbjct: 63 LTALGQPLLVCYGAATRVLRELCARFPISAVYSHQET 99
>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
Length = 471
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 44 SGSAVI-WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALED 100
S S VI WF+QDLR+ D+ L AA + V+PLY+ + + + + ++L+
Sbjct: 2 SASIVIHWFRQDLRLSDNPALSAACEAGEVIPLYILNDKEYGAREFGGATKNWLYYSLKA 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L +SLK Q L+IR G +I L++E A VF
Sbjct: 62 LNESLKGQ---LLIRRGDPAVIINSLIQETGAAGVF 94
>gi|448310167|ref|ZP_21500013.1| deoxyribodipyrimidine photolyase [Natronolimnobius innermongolicus
JCM 12255]
gi|445608328|gb|ELY62179.1| deoxyribodipyrimidine photolyase [Natronolimnobius innermongolicus
JCM 12255]
Length = 468
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
+ W ++DLRV D+ GL A+ + + +VP++V D +L S + + ALE LR +
Sbjct: 3 LYWHRRDLRVSDNCGLERAAAFDEPIVPVFVLDPTVLEHASPVRVACLCEALEALRARYR 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSV 135
++GSDL++ G V+ EL + +V
Sbjct: 63 DRGSDLLVVRGEASAVLPELAADHGVETV 91
>gi|375109296|ref|ZP_09755545.1| deoxyribodipyrimidine photo-lyase [Alishewanella jeotgali KCTC
22429]
gi|374570600|gb|EHR41734.1| deoxyribodipyrimidine photo-lyase [Alishewanella jeotgali KCTC
22429]
Length = 502
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVF--DHRILSRYSNEMLELVIFALEDLRKS 104
++WFK+DLR++DH L A+K AV+P+Y+ D+ S V AL L++
Sbjct: 3 LLWFKRDLRLEDHAALFYAAKNGSAVLPVYIVEPDYWQQPDVSLRHWAFVSEALTQLQQQ 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L G L++ +G V+REL ++V++ +E
Sbjct: 63 LTALGQPLLVCYGAATRVLRELCARFPISAVYSHQET 99
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-----------AVVPLYVFDHRILSRYSNEMLELVI 95
A++WFK+DLR+ D+L L AA + Q A++P+Y+ R + ++
Sbjct: 119 AIVWFKRDLRMHDNLALDAAVRAQQLLQRAGGGDMALLPVYILHRPKHQRCGAVRFQFLL 178
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
A+EDL KS+K L++ G + V+R ++ T +F E V
Sbjct: 179 EAVEDLAKSIKNLQGRLLVLRGDADEVLRAVMTAWGITDLFFEAGV 224
>gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
Length = 500
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDL 101
S ++WF+QDLR+ D L AA + V+PLYV D + ++ + +L L
Sbjct: 34 SDPVLLWFRQDLRLADQAALGAAVQEGPVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSL 93
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L+++GS L++R G + I ++ EE A V A E
Sbjct: 94 DDDLRKKGSRLVLRQGNCVDQIVQIAEETGARRVHALHHYE 134
>gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
algicida OT-1]
gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
algicida OT-1]
Length = 432
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR-------YSNEMLELVI 95
+ + ++WF+ DLR+ D + LV A+K + V+ +Y FD R + + +I
Sbjct: 2 TKTGLVWFRNDLRIHDQVSLVKAAKENSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQFLI 61
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
+ DL+ L E L + F + E V+ E V+ K TSV++++E
Sbjct: 62 ETVSDLQNQLNELNIPLFVHFEKPEKVVSEYVKIHKVTSVYSQKE 106
>gi|384084820|ref|ZP_09995995.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 484
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
++W ++DLR+ DH L AS+ V+PLY+ D + L +L+ L++SL
Sbjct: 5 IVWLRRDLRLADHPALWEASQEGVVIPLYILDAD--EQAGTAELWWRHHSLQQLQESLAR 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVF 136
G L++R G+ +++E++ E A +VF
Sbjct: 63 YGLPLILRRGKPLQILQEIIAETSARAVF 91
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS---RYSNEMLELVIFALEDLRKSLK 106
F++ LR+ D+ L+AA + + P+YV D R L+ ++ +LEDL K+L
Sbjct: 9 FRKGLRLHDNPTLLAALESSETIYPVYVLDRRFLASAMHIGALRWHFLLQSLEDLHKNLS 68
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP 166
G+ L++ G E+V+R+ V++ T V + E+E ++M A + A++ G
Sbjct: 69 RLGARLLVIQGEYESVLRDHVQKWNITQVTLDAEMEPFYKEMEANIRRLGAEL----GFE 124
Query: 167 KICLWQTPFYDIKNLNDL-----PVSHNEFRKLQRPLTSPILP 204
+ YD K + DL P+++ F + L P +P
Sbjct: 125 VLSRVGHSLYDTKRILDLNGGSPPLTYKRFLHILSQLGDPEVP 167
>gi|448502804|ref|ZP_21612753.1| deoxyribodipyrimidine photolyase [Halorubrum coriense DSM 10284]
gi|445693867|gb|ELZ46008.1| deoxyribodipyrimidine photolyase [Halorubrum coriense DSM 10284]
Length = 511
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-------VVPLYVFDHRILSRYSNEMLELVIFALED 100
+ W ++DLR D++GL AA+ + P++VFD +L S+ + ++ L
Sbjct: 3 LFWHRRDLRAADNVGLAAAAGTETDEADRGPAAPVFVFDPAVLDHASDVRVRRLLDGLAA 62
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
LR +E+GSDL++ G E V+ L E + A V
Sbjct: 63 LRDDYRERGSDLLVARGDPEAVLPRLAEALDAERV 97
>gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis]
Length = 1184
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 139/348 (39%), Gaps = 85/348 (24%)
Query: 47 AVIWFK-QDLRVDDHLGL------VAASKYQAVVPLYVFDHRILS-------RYSNEMLE 92
AVIWF+ DLR+ D+ + V A + V+PL+ FD R +
Sbjct: 17 AVIWFRGTDLRLHDNAIVHEAARRVEAGQVAEVLPLFCFDPRYFQASAWGSPKTGQFRAR 76
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKA---TSVFAEEEVEYHLRQMM 149
++ ++ DL+ L+ GSDL+I GR E V+ L+ + + T V A+ EV + +
Sbjct: 77 FLLESVRDLKARLRALGSDLLICMGRPEEVLPGLMAQRGSGLQTCVLAQSEVT---SEEL 133
Query: 150 AIVDETLAKVSLVDGKPKICLWQTPFYDIKN------LNDLPVSHNEFR-------KLQR 196
AI + + V GK + W + Y +++ L D+P F+ ++++
Sbjct: 134 AIEKKVKSAVVAAGGKLDL-YWGSTMYHLEDLPFREGLRDMPDVFTPFKQKCEDRCQVRK 192
Query: 197 PLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKL 256
P +P P L PLP E E P ++E+ ++ +
Sbjct: 193 PFPAPA-PGAL----------PLPAGLEAARLAFE-PQRVED---------LNAVVPEGH 231
Query: 257 SKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYL--RYLEGTVRD 314
+L + Q R LD GG +A L L+ YL L T D
Sbjct: 232 PQLA-------SPQRDTRAVLD-----------FEGGESAALARLRYYLFDSNLVATYFD 273
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKE 362
RN G ++T P L G +S R V+Y+ ++E++
Sbjct: 274 T--------RNGML--GGDYSTKLAPWLAHGCLSPRSVYYDIKRYERQ 311
>gi|448546392|ref|ZP_21626556.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548379|ref|ZP_21627646.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557573|ref|ZP_21632762.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702845|gb|ELZ54785.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445714130|gb|ELZ65897.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714474|gb|ELZ66236.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 503
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-------------ILSRYSNEMLE 92
+++ WF++DLR+ D+ AA VVP+Y D R +
Sbjct: 5 TSLAWFRRDLRLHDNAAFAAACGADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ +L DLR SL+++GSDL++R GR E+V+ EL A V ++ + V
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPELAAATDADFVTVHTRPTPEESRVESAV 124
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ L DG +W + + L+DLP ++ FRK
Sbjct: 125 ETELRG----DGVELRRVWGHTLTHLDDLPMVLSDLPDTYTTFRK 165
>gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
Length = 560
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 34 PTAAATSKG-RSGS----AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY- 86
P++AA ++ R G+ ++WF++DLR DH L A ++ + V +VFD IL
Sbjct: 47 PSSAAQTRAYRIGAHFRRGLVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLL 106
Query: 87 -----SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
++ +E + A+E LR +L+E G +L++ + I L +++ +VFA +
Sbjct: 107 AHGLRADRRVEFIRAAVEALRGALREAGGELIVLHDHAHHAIPSLAQQLGVEAVFANHDE 166
Query: 142 EYHLRQMMAIVDETLAK 158
E A V + LA+
Sbjct: 167 EPAALARDAAVRDALAR 183
>gi|260436401|ref|ZP_05790371.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH
8109]
gi|260414275|gb|EEX07571.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH
8109]
Length = 493
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR+ DH L AA++ V+PLYV + + + S +L +LR++L
Sbjct: 6 IVWFKRDLRIVDHQPLAAAAERGLVLPLYVVEPELWQQPDASERQWMFCRESLLELRQAL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
++G L++R G V V+ + +++ EE
Sbjct: 66 ADRGQPLVVRAGDVVQVLERARRQFGIDGLWSHEET 101
>gi|408492000|ref|YP_006868369.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
gi|408469275|gb|AFU69619.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
Length = 435
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNE--MLELVIFALEDLRKS 104
V WF++D+R++D++GL A S +VVPL++FD IL+ + + + L+ +R
Sbjct: 7 VFWFRRDMRLEDNVGLYHALSGVFSVVPLFIFDKNILNELQEDDARISFIFEQLQKMRSH 66
Query: 105 LKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK--VSL 161
L++ GS + E EL+++ + +V+ + E + Q + ++ LA +
Sbjct: 67 LQDHYGSSIATYHSTPEEAFHELLKDFEVEAVYTNRDYEPYAHQRDSKINTLLANQGIEF 126
Query: 162 VDGKPKICLWQT 173
D K ++ +T
Sbjct: 127 HDFKDQVIFEKT 138
>gi|398384297|ref|ZP_10542330.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
gi|397722893|gb|EJK83422.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
Length = 458
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDLRKSL 105
++WF+QDLR+ D L AA+ V+P+YV D +++ + +L L +SL
Sbjct: 6 IVWFRQDLRLSDQAALAAAAHAGPVIPVYVLDDDGPRQWAMGGAARWWLHHSLRSLDESL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137
+ +GS L++R GR +V+ ++ E A SV+A
Sbjct: 66 RARGSRLILRCGRSADVLAQVAAETGAKSVYA 97
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALE 99
R+ ++WF+QDLR+ D+ L AA + VVP++V D R + +L
Sbjct: 2 RATPILVWFRQDLRLADNPALSDAARSGRPVVPVFVLDDDTPGGWRPGGASRWWLHHSLA 61
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L +SL GS L++R GR + I ELV E A +V
Sbjct: 62 SLSRSLATAGSPLVLRRGRADVAIGELVRETGAGTVL 98
>gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum IPO1609]
gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein
[Ralstonia solanacearum IPO1609]
Length = 522
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 34 PTAAATSKG-RSGS----AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY- 86
P++AA ++ R G+ ++WF++DLR DH L A ++ + V +VFD IL
Sbjct: 9 PSSAAQTRAYRIGAHFRRGLVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLL 68
Query: 87 -----SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
++ +E + A+E LR +L+E G +L++ + I L +++ +VFA +
Sbjct: 69 AHGLRADRRVEFIRAAVEALRGALREAGGELIVLHDHAHHAIPSLAQQLGVEAVFANHDE 128
Query: 142 EYHLRQMMAIVDETLAKVSLVDGKPKICLW 171
E A V + LA+ + C W
Sbjct: 129 EPAALARDAAVRDALAR--------QPCAW 150
>gi|145224666|ref|YP_001135344.1| deoxyribodipyrimidine photo-lyase [Mycobacterium gilvum PYR-GCK]
gi|145217152|gb|ABP46556.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
PYR-GCK]
Length = 449
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 22/148 (14%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
AV+WF++DLR+ D LVAA++ V+ YV D R+ + + L+ + AL DLR+SL
Sbjct: 3 AVLWFRRDLRLADLPALVAAAEVDGDVLACYVLDPRLKATGGSRRLQYLYDALRDLRESL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV--- 162
+ L+I G + I L V A+SV E+ + V + L V LV
Sbjct: 63 DGR---LLITRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGDVELVATG 119
Query: 163 -------------DGKPKICLWQTPFYD 177
DG P TPF+D
Sbjct: 120 SPYLVSPGRVTKGDGSPYKVF--TPFFD 145
>gi|417860350|ref|ZP_12505406.1| DNA photolyase [Agrobacterium tumefaciens F2]
gi|338823414|gb|EGP57382.1| DNA photolyase [Agrobacterium tumefaciens F2]
Length = 479
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ D+L L+AA ++ V+PLY+ + + +L L +L+
Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPLYI-QEKSSGPLGGAQEWWLHHSLASLTVALE 67
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
E GS L++R G E +R ++ E A ++F
Sbjct: 68 ETGSRLLLRSGDAEETLRHVISETGADTIF 97
>gi|187921432|ref|YP_001890464.1| deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
Length = 499
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL-------------SRYSNEML 91
+ ++WF++DLR D+ L A K+ + V ++VFD IL ++ + +
Sbjct: 13 TGLVWFRRDLRSTDNAALYYALKHCERVWCVFVFDTTILQPLVEAWQARHPDTQPQDRRI 72
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
EL++ AL +L ++L+ G L++ +G +++ +L +E+ +VFA + E
Sbjct: 73 ELILGALGELDEALRANGGGLIVLYGDPADLVPKLADELGVDAVFANHDYEPVAIARDET 132
Query: 152 VDETLAKVS 160
V ETLA+
Sbjct: 133 VRETLAEAG 141
>gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1]
gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1]
Length = 526
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 86/224 (38%), Gaps = 21/224 (9%)
Query: 19 RRSLRSRYKCVCCVSP-TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYV 77
+R R + K P T+ T +A++WF+ DLR DH + AS ++
Sbjct: 13 QRVRRDQTKAFMAAGPRTSLTTDWHVMANALVWFRNDLRTIDHEPFLRASTADRCFAVHC 72
Query: 78 FDHRI-------LSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEV 130
D R R +I L DLR L+ G +L++R GR E V++ L+ +
Sbjct: 73 IDPRQFETTELGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSL 132
Query: 131 KATSVFAEEEVEYH----LRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPV 186
+V E + + D+ + G I + PF + D P
Sbjct: 133 AIDAVHFHHEPRTEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPF----EIADTPE 188
Query: 187 SHNEFRK---LQRPLTSPILPPTLAGAKL--EADWGPLPTFDEL 225
+FRK Q SP+ P L E + G +PT + L
Sbjct: 189 LFTDFRKEIEKQCEARSPLEEPIRIHGTLPEEVNAGDIPTLESL 232
>gi|408373113|ref|ZP_11170811.1| deoxyribodipyrimidine photo-lyase [Alcanivorax hongdengensis
A-11-3]
gi|407766951|gb|EKF75390.1| deoxyribodipyrimidine photo-lyase [Alcanivorax hongdengensis
A-11-3]
Length = 501
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRK 103
+ V+WFK+DLR+ DHL L A + V+PLY+ + + + S + + +L DLR+
Sbjct: 3 AQVVWFKRDLRIGDHLPLWEACRAGPVLPLYIIEPQYWHQPDSSARQWQFIAESLRDLRR 62
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
L G L + G V+ L A ++ + EE H
Sbjct: 63 QLAAIGLPLWVVEGETLTVLDGLHSRFGAFALHSHEEYGGH 103
>gi|398826896|ref|ZP_10585124.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
gi|398219708|gb|EJN06173.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
Length = 508
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 129/326 (39%), Gaps = 45/326 (13%)
Query: 13 PLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQA- 71
P+ R R ++ V S T + ++WF+ DLR+ DH L AA+K A
Sbjct: 7 PINGRSYRRTRHAFQIVNEASLTTPSAP-----PIIVWFRDDLRLSDHPALHAAAKTGAP 61
Query: 72 VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVK 131
VV LYV D + +L L + +G L++R G V+ E+V E
Sbjct: 62 VVCLYVLDDAAGRAPGGAARWWLAQSLRTLGAEIAARGGSLILRKGPAARVVAEVVRESG 121
Query: 132 ATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN--DLPVSHN 189
A++V+ + + + ++ LAK+ VD + + P I+N L V
Sbjct: 122 ASAVYWNGIAQAPHQAVERQLEAALAKLG-VDSQSFLGDLLVPPSAIRNKEGRGLRVFTP 180
Query: 190 EFRKL------QRPLTSPI---LPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESW 240
+R++ +PL +P P +A LE+ W PT + L ESW
Sbjct: 181 FWRRVLALGDPPKPLPAPKQLRAGPNIASDTLES-WALEPTTPDWAG-------GLRESW 232
Query: 241 TLINNMSAETILTDKL-----SKLGKRSKRNLN-----------NQHSPRKRLDKSFFVT 284
T SA L D L S +G R + + + SPR+ + F
Sbjct: 233 T-PGEASARARLRDFLKTIARSYVGDRDRPDREGTSRLSPHLRFGELSPRQVFHAARFAA 291
Query: 285 DKGNTVGGGTNAVLNAL--QAYLRYL 308
+ +G G L+ L + + R+L
Sbjct: 292 AENPALGPGIEKFLSELGWREFCRHL 317
>gi|126735513|ref|ZP_01751258.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
gi|126714700|gb|EBA11566.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
Length = 505
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF--DHRILSRYSNEMLELVIFALEDLRKSL 105
V+WFK+DLR+ DH L A++ V+PLYV ++ L S A+ DL++ +
Sbjct: 13 VVWFKRDLRLHDHAPLSQAAQAGTVLPLYVIEPEYWALPDVSYRQWRFWAGAIADLQQQI 72
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L +R G V +V+ +L + + A +E
Sbjct: 73 ATLGGQLCLRSGAVVDVLSQLRADYGPFDLVAHQET 108
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNEM------LELVIFALED 100
++W ++DLR+ D+ L A ++ A + +++FD +IL + + ++ ++ L++
Sbjct: 13 IVWHRRDLRIADNPALDQAIAQNGATIGIFIFDPQILESKAEDQTTGAGQVDFMLGCLQE 72
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L+ + ++ GSDL+ G IR++ + + A VF ++VE R+ LA++
Sbjct: 73 LQAAYQDLGSDLLFFHGDPAKTIRDIAQTLNAARVFFNQDVEPFARERDRQACAALAEIG 132
Query: 161 L 161
+
Sbjct: 133 V 133
>gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
Length = 436
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALEDLRK 103
++ WF++DLR++D++GL A K V+P+++FD IL + + + LE +R
Sbjct: 6 SIFWFRRDLRLEDNVGLYQALKGDYPVLPIFIFDKEILENLPKDDARVSFIFEQLESMRN 65
Query: 104 SLKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+E+ S L I G + + + L+++ + +V+ + E
Sbjct: 66 TLQEEVESSLAIYHGTPQEIFKSLIKDYEVQAVYTNHDYE 105
>gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957]
gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum CFBP2957]
Length = 522
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY------SNEMLELVIFALE 99
++WF++DLR DH L A ++ + V +VFD IL ++ +E + A+E
Sbjct: 27 GLVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLLARGLRADRRVEFIRAAVE 86
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
LR +L+E G +L++ + I L +++ +VFA + E A V + LA+
Sbjct: 87 ALRSALREAGGELIVLHDHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRDALAR- 145
Query: 160 SLVDGKPKICLWQTPFYDIKN 180
+ C W +D K+
Sbjct: 146 -------QPCAW----FDFKD 155
>gi|149202359|ref|ZP_01879332.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
gi|149144457|gb|EDM32488.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV DH L A++ ++PLY+ + + + S + LE LR+ L
Sbjct: 6 ILWFKRDLRVQDHPALTHAARLGPILPLYIVEPGLWAEPDASGRQYAFICECLESLREDL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++R G V+ +L + + EE
Sbjct: 66 AGLGLTLVVRVGDAVTVLEDLRAAHAVVHLVSHEET 101
>gi|379707822|ref|YP_005263027.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia cyriacigeorgica
GUH-2]
gi|374845321|emb|CCF62385.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia cyriacigeorgica
GUH-2]
Length = 442
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRY-SNEMLELVIFALEDL 101
S ++ F +DLR+ D+ L AAS + + V+PL+V D IL+R+ + + ++ AL +L
Sbjct: 5 SAPSIALFTRDLRIHDNPVLAAASDHGSPVIPLFVADDAILTRFGAPNRIRFLLAALAEL 64
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L +GS L++R G L E AT V +V
Sbjct: 65 DDELHRRGSHLVLRRGDTVTETARLAREAGATDVHLAADV 104
>gi|92429538|gb|ABD93513.2| DNA photolyase protein [Solanum chmielewskii]
Length = 173
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 65 AASKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDLRKSLKEQGSDLMIRFG 117
A ++ +V+ +Y FD R + S+ +I ++ DLRK+L+ +GSDL++R G
Sbjct: 2 AHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIG 61
Query: 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD 177
+ E V+ EL + V A +V+A EV + + +D + +G W + Y
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKD----EGLEVKYFWGSTLYH 117
Query: 178 IKN----LNDLPVSHNEFRK 193
+ + L +P ++ FR+
Sbjct: 118 VDDLPFKLEQMPTNYGGFRE 137
>gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
Length = 479
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ DH L AA + + +VP+++ D + + + L + LE K L
Sbjct: 11 ILWFRRDLRLSDHPALSAAMRTGRPIVPVFILDDAVQALGAAPKWRLGL-GLEAFAKGLS 69
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+ GS L++R G +V+ L+ + A +VF
Sbjct: 70 QIGSRLILRQGAALDVLESLIRDTGAGTVF 99
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+A++WF+ DLR++D+ + A S +Q V+PLY++D + S + +L L S
Sbjct: 3 TALVWFRFDLRLNDNPAFIEACSHHQFVIPLYIYDEKN-SVLGGAQAWWLYHSLTSLSNS 61
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L ++G +L++R G +I +L + V +SV+
Sbjct: 62 LAQRGLNLILRKGDPLEIILDLAKTVSISSVY 93
>gi|343496948|ref|ZP_08735033.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342820401|gb|EGU55224.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 483
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVP---LYVFDHRILS--RYSNEMLELVIFAL 98
S ++WFK+DLR++DH + A Q+ +P LYVF+ +L+ Y V ++
Sbjct: 2 SAINIVWFKRDLRLNDHAPI--ADAIQSGLPTCFLYVFEPILLNDPHYDERHWRFVWQSI 59
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
ED+ + L + G + + FG V +V + + ++ +++ EEV
Sbjct: 60 EDINQQLAQYGGKVEVAFGNVLDVFQNIHQQHPIAGLYSHEEV 102
>gi|92429554|gb|ABD93521.2| DNA photolyase protein [Solanum lycopersicoides]
Length = 173
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 65 AASKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDLRKSLKEQGSDLMIRFG 117
A ++ +V+ +Y FD R + S+ +I ++ DLRK+L+ +GSDL++R G
Sbjct: 2 AHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIG 61
Query: 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD 177
+ E V+ EL + V A +V+A EV + + +D + +G W + Y
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKD----EGLEVKYFWGSTLYH 117
Query: 178 IKN----LNDLPVSHNEFRK 193
+ + L +P ++ FR+
Sbjct: 118 VDDLPFKLEQMPTNYGGFRE 137
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS--RYSNEMLELVIFALEDLR 102
+ ++WF+ DLR+ DH L AA K V+ L+V D + + +LE L
Sbjct: 8 ATIVWFRNDLRLCDHPALTAAVKRGGPVIALFVLDDAAAGCWKLGGASRWWLAKSLEALS 67
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+ ++G+ L++R G E++++ LV+E AT+V+ E
Sbjct: 68 HDIAQRGARLILRRGDTESILKRLVDESGATAVYVTRGYE 107
>gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
gi|81821701|sp|Q5QXE0.1|CRYD_IDILO RecName: Full=Cryptochrome DASH
gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
Length = 449
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 16/160 (10%)
Query: 51 FKQDLRVDDHLGLV-AASKYQAVVPLYVFD-------HRILSRYSNEMLELVIFALEDLR 102
F+ DLRV+D+L L AA + + ++ + F+ H + + +L+ LR
Sbjct: 21 FRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQSLKQLR 80
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
L+ +G L++ G + ++ EL+ E + ++F + Y+ R + ++ + +
Sbjct: 81 TELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGYYERLQLGLLQQRFPFLPFH 140
Query: 163 DGKPKICLW---QTPFYDIKNLNDLPVSHNEFRKLQRPLT 199
+ P L+ + PF L DLP + ++FRK PL+
Sbjct: 141 E-TPNNTLFSEQELPF----ELADLPETFSQFRKKVEPLS 175
>gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2]
gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(photoreactivating enzyme). (phrB) [Sulfolobus
solfataricus P2]
Length = 433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E VI+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKDVDAV 94
>gi|227829309|ref|YP_002831088.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
gi|284996667|ref|YP_003418434.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
Length = 433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E VI+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKDVDAV 94
>gi|229583293|ref|YP_002841692.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
Length = 433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E VI+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKDVDAV 94
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 25/200 (12%)
Query: 47 AVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILS-----------RYSNEMLELV 94
A++WF++ LR+ D+ L AA + V P++V D L+ R ++ +
Sbjct: 2 ALLWFRKGLRLHDNPSLEAACHGSRNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQFL 61
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVD 153
+ +L+DL ++L +GS L++ G VI EL+++ + + E + E Y L + I +
Sbjct: 62 LESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFDTEPYALDRDAKIKE 121
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPI------LPPT- 206
K + ++ KN P++ F K P T PI +PPT
Sbjct: 122 HAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPSAIPPTG 181
Query: 207 -LAGAKLEADWGPLPTFDEL 225
L G K+ P+PT +EL
Sbjct: 182 DLHGIKVV----PVPTLEEL 197
>gi|421889155|ref|ZP_16320215.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
gi|378965575|emb|CCF96963.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
Length = 522
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 19/140 (13%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY------SNEMLELVIFALED 100
++WF++DLR DH L A ++ + V +VFD IL ++ +E + A+E
Sbjct: 28 LVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLLARGLRADRRVEFIRAAVEA 87
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
LR +L+E G +L++ + I L +++ +VFA + E A V + LA+
Sbjct: 88 LRGALREAGGELIVLHDHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRDALAR-- 145
Query: 161 LVDGKPKICLWQTPFYDIKN 180
+ C W +D K+
Sbjct: 146 ------QPCAW----FDFKD 155
>gi|385772287|ref|YP_005644853.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
Length = 433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E VI+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKDVDAV 94
>gi|385775002|ref|YP_005647570.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
Length = 433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E VI+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKDVDAV 94
>gi|428201469|ref|YP_007080058.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
gi|427978901|gb|AFY76501.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
Length = 477
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA K VV ++ D +L R + + +I L++L++
Sbjct: 6 LFWHRRDLRISDNIGLAAARQKSSRVVGVFCLDRNLLKRDDIAPARITYMIGCLQELQQK 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+ GS L+I G I L E +K +VF ++E + +Q V E L
Sbjct: 66 YLQLGSQLLIVQGDPNQAITALAEALKVQAVFFNLDIEPYAKQRDEKVKEAL 117
>gi|92429544|gb|ABD93516.2| DNA photolyase protein [Solanum habrochaites]
gi|92429552|gb|ABD93520.2| DNA photolyase protein [Solanum pennellii]
Length = 174
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 65 AASKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDLRKSLKEQGSDLMIRFG 117
A ++ +V+ +Y FD R + S+ +I ++ DLRK+L+ +GSDL++R G
Sbjct: 2 AHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIG 61
Query: 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD 177
+ E V+ EL + V A +V+A EV + + +D + +G W + Y
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKD----EGLEVKYFWGSTLYH 117
Query: 178 IKN----LNDLPVSHNEFRK 193
+ + L +P ++ FR+
Sbjct: 118 VDDLPFKLEQMPTNYGGFRE 137
>gi|229583833|ref|YP_002842334.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
Length = 433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E VI+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKDVDAV 94
>gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
Length = 433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E VI+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKDVDAV 94
>gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
DSM 43043]
gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
DSM 43043]
Length = 455
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+V+WF++DLRV DH L+AA +V+P++V D R+L L I +L L SL
Sbjct: 4 SVLWFRRDLRVSDHPALLAALDSGTSVLPVFVLDPRLLETGQPRSRRL-ITSLRALADSL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
L++R G +VI ++ EV A SV E R A V+ L
Sbjct: 63 DGH---LVVRTGNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVAL 110
>gi|238618755|ref|YP_002913580.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
Length = 433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E VI+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKDVDAV 94
>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
Length = 477
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM------LELVIFALED 100
+ W ++DLR+ D+LGLV A++ AV +YV D +++ L +I +L +
Sbjct: 7 LFWHRRDLRLADNLGLVVAAQISPAVTGVYVLDPAVINPPPELPPMAPARLWFLIESLVE 66
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L++ +E GS L++ G V+ ++ +++ A +V +VE + R+ D +AK
Sbjct: 67 LQQRWREAGSRLLVVEGDPVAVLPQVAQQISAEAVVWNRDVEPYARKR----DRQVAKTL 122
Query: 161 LVDGKPKICLW 171
DG+ + W
Sbjct: 123 QADGRRVVADW 133
>gi|92429546|gb|ABD93517.2| DNA photolyase protein [Solanum chilense]
Length = 173
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 65 AASKYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDLRKSLKEQGSDLMIRFG 117
+++ +V+ +Y FD R + S+ +I ++ DLRK+L+ +GSDL++R G
Sbjct: 2 GSNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIG 61
Query: 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD 177
+ E V+ EL + V A +V+A EV + + +D + +G W + Y
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKD----EGLEVKYFWGSTLYH 117
Query: 178 IKN----LNDLPVSHNEFRK 193
+ + L +P ++ FR+
Sbjct: 118 VDDLPFKLEQMPTNYGGFRE 137
>gi|149376017|ref|ZP_01893783.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
algicola DG893]
gi|149359654|gb|EDM48112.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
algicola DG893]
Length = 507
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVF--DHRILSRYSNEMLELVIFALEDLR 102
+ V+WFK+DLR DH L+AA + V+P+YV D+ L S + L DL
Sbjct: 2 TTVVWFKRDLRTRDHEPLIAAVNLGEPVIPIYVVEDDYWQLPDTSERQWAFIRDCLLDLD 61
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ LK G+ L++ G V +V+ +L VF +E
Sbjct: 62 QQLKYAGNRLVVCNGAVTDVLNQLKANHDVQRVFCHQET 100
>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
Length = 436
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+V WF++DLR++D+ GL+ A + V+P+++FD IL + ++ + + +E L
Sbjct: 6 SVFWFRRDLRLEDNTGLLKALQGPTPVLPIFIFDTEILCQVPKNDARVNFIYNTIETLNT 65
Query: 104 SLKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
++K++ S + I G+ + L+++ +VFA + E H + + E LA S+
Sbjct: 66 NIKKKHKSSIAIFHGKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKELLANNSI 124
>gi|354612754|ref|ZP_09030696.1| DNA photolyase FAD-binding [Saccharomonospora paurometabolica YIM
90007]
gi|353222892|gb|EHB87187.1| DNA photolyase FAD-binding [Saccharomonospora paurometabolica YIM
90007]
Length = 454
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+++ F +DLRV D+ L AA + V+PL+V D R+++ + L DL
Sbjct: 4 SLVLFTRDLRVHDNPALRAAVDGAERVIPLFVVDSRLVATGYPGGNRAAFLARCLADLDA 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
L+E+G LMIR G + +R LVEE V ++V H
Sbjct: 64 GLRERGGRLMIRTGDPADRVRGLVEEHGIREVHVADDVSGH 104
>gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
Length = 440
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKS 104
+ WF++D+R+DD++G + A K V+P+++FD IL + + + L+ +R +
Sbjct: 7 IFWFRRDMRLDDNVGFLEALKSDYPVLPIFIFDKEILDHLPEDDARVTFIYEELQRMRNN 66
Query: 105 LKE-QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L+E S L +G+ N+ +E+++ + +VF + E
Sbjct: 67 LQENHDSSLATFYGKPLNIWQEIIDNYEVNAVFTNRDYE 105
>gi|406662067|ref|ZP_11070173.1| Deoxyribodipyrimidine photo-lyase [Cecembia lonarensis LW9]
gi|405554054|gb|EKB49180.1| Deoxyribodipyrimidine photo-lyase [Cecembia lonarensis LW9]
Length = 433
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
++ WF++DLR++D+ GL A ++ + ++P+++FD IL + ++ V F ++ L+
Sbjct: 5 SIFWFRRDLRLEDNTGLYHAYNQEKNILPIFIFDRDILDKLEDKKDARVTFIHHQIDILQ 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
K L+ G+ ++ ++G+ V +EL++ +V+ + E + ++
Sbjct: 65 KHLQGFGTSILTKYGKPLEVWKELLDSYDIENVYTNRDYEPYAKE 109
>gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
gi|384432815|ref|YP_005642173.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
Length = 431
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + ++Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALGNCEKVIPTFILDPRQVGDENQYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
++GS L + FG E VI+ L+++V A
Sbjct: 67 GKRGSRLYVYFGLAEEVIKSLLKDVDAV 94
>gi|336254750|ref|YP_004597857.1| Deoxyribodipyrimidine photo-lyase [Halopiger xanaduensis SH-6]
gi|335338739|gb|AEH37978.1| Deoxyribodipyrimidine photo-lyase [Halopiger xanaduensis SH-6]
Length = 476
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ L A+ AVVP++V D +L S + ++ ALE LR +E+G
Sbjct: 5 WHRRDLRGPDNRALARAAT-DAVVPVFVLDPTVLEYASPIRVACMLEALESLRAWYRERG 63
Query: 110 SDLMIRFGRVENVIRELVEEVKATSV 135
DL+I G VI L +E A +V
Sbjct: 64 GDLVIARGEASAVIPRLADEYGADAV 89
>gi|448321022|ref|ZP_21510503.1| deoxyribodipyrimidine photolyase [Natronococcus amylolyticus DSM
10524]
gi|445604422|gb|ELY58370.1| deoxyribodipyrimidine photolyase [Natronococcus amylolyticus DSM
10524]
Length = 472
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR D+ L A++ +VP++V D IL S + ++ AL DLR ++
Sbjct: 3 VHWHRKDLRGVDNRALARAAQADRLVPVFVLDPTILEYASPVRVACLLEALADLRAWYRD 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEE-----VEYHLRQMMAIVDETLAKVSLV 162
+GSDL++ G VI L E A V E+ E A+ +E + S+
Sbjct: 63 RGSDLLVVRGNAREVIPSLAAERDAARVVWNEDYSGLAAERDEAVRAALEEEGIDHESVT 122
Query: 163 DG 164
DG
Sbjct: 123 DG 124
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 18/193 (9%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVP------LYVFDHRILS--RYSNEMLELVIFAL 98
+++W ++DLR+ D+ L A AV+P +++FD IL ++ ++ L
Sbjct: 5 SIVWHRRDLRLQDNPALAKA----AVIPNSETVGIFIFDPDILKSPETGGGKVDFMLGCL 60
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLA 157
++L++S +E GS+L+ +G + V+ +L + +K +F ++VE +++ A++ E A
Sbjct: 61 KELQQSYRELGSELLCFYGNPKEVLAKLAQVLKPQRLFFNQDVEPSAIKRDQAVIQELSA 120
Query: 158 KVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSPILPPT-LAGAKL-- 212
V G I L K+ + ++ F K + +P SP+ P L G K
Sbjct: 121 IGIEVKGFLDIALHAPQAIATKSTGEPYKVYSPFWKNWITQPKPSPLPKPQKLLGLKNCD 180
Query: 213 EADWGPLPTFDEL 225
D PLP+ EL
Sbjct: 181 GLDAIPLPSLAEL 193
>gi|372281898|ref|ZP_09517934.1| deoxyribodipyrimidine photo-lyase [Oceanicola sp. S124]
Length = 472
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++W ++DLR DH L AA K V+P+++ D + + L L + L LK
Sbjct: 6 LLWIRRDLRTTDHEALAAACKRGGPVIPVFIRDDSVTGLGAAPALRLDL-GLAAFAARLK 64
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
E+GS L++R G V+R+L +E A +V+
Sbjct: 65 EKGSRLILRSGNPLEVLRDLAKETGAGAVY 94
>gi|421610747|ref|ZP_16051913.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408498531|gb|EKK03024.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 488
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFA 97
+A++WF+ DLR DH + AS ++ D R R +I +
Sbjct: 2 ANALVWFRNDLRTIDHEPFLRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIES 61
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH----LRQMMAIVD 153
L DLR L+ G +L++R GR E V++ L+ + +V E + + D
Sbjct: 62 LTDLRSRLRSLGGELIVRAGRPETVLQHLLPSLAVDAVHFHHEPGTEEADTAESVQQLCD 121
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-------LQRPLTSPILPPT 206
+ + G I + PF ++D P +FRK + PL PI
Sbjct: 122 QQGIATHVAYGDTLIHPDELPF----EISDTPELFTDFRKEIEKQCEARSPLEEPI---R 174
Query: 207 LAGA-KLEADWGPLPTFDEL 225
+ GA E + G +PT + L
Sbjct: 175 IQGALPEEVNAGDIPTLESL 194
>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
Length = 481
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRK 103
++WF++DLR+ D+ L AA + + +VPL+VFD +L + + + ++ LE+LR+
Sbjct: 3 GLVWFRRDLRLSDNPALSAACQECREIVPLFVFDEPLLRSHAFGSACVGFMLGCLEELRR 62
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
SL G L R G + + ++ K +V+ + E
Sbjct: 63 SLALHGVSLAWRMGDPVESVLQAADDFKVDAVYWNRDYE 101
>gi|440712553|ref|ZP_20893169.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436442708|gb|ELP35819.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 488
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFA 97
+A++WF+ DLR DH + AS ++ D R R +I +
Sbjct: 2 ANALVWFRNDLRTIDHEPFLRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIES 61
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH----LRQMMAIVD 153
L DLR L+ G +L++R GR E V++ L+ + +V E + + D
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAESVQQLCD 121
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-------LQRPLTSPILPPT 206
+ + G I + PF ++D P +FRK + PL PI
Sbjct: 122 QQGIATHVAYGDTLIHPDELPF----EISDTPELFTDFRKEIEKQCEARSPLEEPI---R 174
Query: 207 LAGA-KLEADWGPLPTFDEL 225
+ GA E + G +PT + L
Sbjct: 175 IQGALPEEVNAGDIPTLESL 194
>gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M]
gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M]
Length = 447
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+ DH L AA+ + V+ +V D R+ + L+ + +L L +L+
Sbjct: 4 ALLWFRRDLRLGDHPALAAAADSEEVLACFVVDPRLEASSGLRRLQFLGDSLRQLNDALQ 63
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV-DGK 165
+ L++ GR E I + + ++A+SV + R+ V L +V LV G
Sbjct: 64 GR---LLVTRGRPEQRIPLIAKAIEASSVHVSGDFAPFGRRRDERVAAGLGRVPLVATGS 120
Query: 166 PKICLWQTPFYDIKN 180
P + +P +KN
Sbjct: 121 PYLV---SPGRVVKN 132
>gi|443477859|ref|ZP_21067672.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
gi|443016926|gb|ELS31485.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
Length = 497
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 48 VIWFKQDLRVDD----HLGLVAASKYQA-VVPLYVFDHRILSRYSNEM-------LELVI 95
++WF+ DLR+ D L A+ + A V P Y FD + S + +I
Sbjct: 7 LVWFRNDLRLHDCEILSLAAEASKRMNAEVFPFYCFDPYHFGKTSFGFEKTGAFRAKFLI 66
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV---EYHL-RQMMAI 151
++ DLR +L+ SDL++R G+ E ++ EL +++ TS++ + E+ E L R++ +I
Sbjct: 67 ESVIDLRANLRSLNSDLIVRIGKPELILPELTQQLGLTSIYYQREIATEETSLERRLHSI 126
Query: 152 VDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-------LQRPLT----S 200
+ GK I PF + LP FRK ++ P
Sbjct: 127 FTKQNVDFKGFWGKTLIHCDDLPF----AIAHLPELFTHFRKQVEANLIIREPFPLVDRL 182
Query: 201 PILPPTLAGAKLEADWGPLPTFDEL 225
P LPP++ D G +P +L
Sbjct: 183 PALPPSI-------DIGEIPHLTQL 200
>gi|390955825|ref|YP_006419583.1| DASH family cryptochrome [Aequorivita sublithincola DSM 14238]
gi|390421811|gb|AFL82568.1| cryptochrome, DASH family [Aequorivita sublithincola DSM 14238]
Length = 474
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 28/244 (11%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSR----YSNEMLELVIF- 96
+ +A++WFK DLR+ D+ L A V+ LY D RI + IF
Sbjct: 7 KKATALMWFKNDLRLHDNEALCNAIACNLPVIYLYCIDSRIFKSLNLGFRKADANRAIFL 66
Query: 97 --ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
+LEDL+ L+E G L+I +G E++I V ++AEEE + QMM V++
Sbjct: 67 KQSLEDLQIKLEELGGHLIIEYGIPEDIIASYVTNYTVKQIYAEEEYAWEELQMMKKVEK 126
Query: 155 TLAKVSLVDGKPKI-CLWQTPFY---DIK-NLNDLPVSHNEFR---KLQRPLTSPILPPT 206
L+DG + W Y DI ++ +P++ +R Q + P+ P+
Sbjct: 127 ------LIDGTASLTTFWGKTLYHKDDIPFEISKIPLTSKAYRIPTGNQSTVREPLKEPS 180
Query: 207 LAGAKLEADWGPLPTFDELK----EFVNENPWKLEESWTLINNMSAETILTDKLSKLGKR 262
A E P F L E + +P+ I+ + T T++L+ G R
Sbjct: 181 NLNAYDEVKSTEFPEFKILGFNSLEILEADPYVAGGESAGIDRLHYYTFETEQLT--GYR 238
Query: 263 SKRN 266
RN
Sbjct: 239 WSRN 242
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLEL----VIFALEDLRKSL 105
F++ LR+ D+ L+ A + A+ P+YV D R+ + + M L ++ +LEDL L
Sbjct: 9 FRKGLRLHDNPSLLGALASSSALYPVYVLD-RVFLQGAMHMGALRWRFLLQSLEDLDTRL 67
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG- 164
+ GS L + G N++RELV + T + + EVE + +M D+ + V+ +G
Sbjct: 68 QAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRM----DKDIQTVAQENGL 123
Query: 165 KPKICLWQTPFYDIK-----NLNDLPVSHNEFRKLQRPLTSPILP 204
+ C+ T YD+K N P+++ +F + L P P
Sbjct: 124 QTYTCVSHT-LYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKP 167
>gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
Length = 482
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHR-----ILSRYSNEMLELVIFA 97
+ + ++WF+QDLR++D L AAS+ + V+PLY+FD ++ S L +
Sbjct: 2 TDTVILWFRQDLRLNDLPALQAASRDGRRVLPLYIFDEDSPGDWVMGGASRWWLH---HS 58
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L L + +++QG L+ R G+ V+ ++ + AT+V+ E + ++ E L
Sbjct: 59 LSALARDIEDQGGKLIFRRGKSREVLGDICKSTDATAVYCSRRYEPWASEEEKMLHEDLG 118
Query: 158 KVSL 161
+
Sbjct: 119 NSDI 122
>gi|433639824|ref|YP_007285584.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
gi|433291628|gb|AGB17451.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
Length = 467
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W +QDLR D+ GL A+ +A+ P++VFD +L S + ++ AL LR ++
Sbjct: 3 VHWHRQDLRTADNRGLSVAAADEAL-PVFVFDPDVLKDGSPPRVAFMLDALARLRARYRD 61
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
SDL++ +G I ELV E A V E+
Sbjct: 62 LESDLVVAWGDPAEAIPELVAEYGADGVVWNED 94
>gi|402495080|ref|ZP_10841814.1| deoxyribodipyrimidine photo-lyase [Aquimarina agarilytica ZC1]
Length = 433
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+ WF++DLR+ D+ GL A S+ + V+P+++FD IL+ + L + +L ++
Sbjct: 5 TIFWFRRDLRLTDNTGLFFALSENKNVLPIFIFDTEILNSLPKKDARLNFIYDSLLEINL 64
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L ++ + + G+ ++ ++L +E+ TSV+ + E
Sbjct: 65 QLNKENKGISLYHGKPLDIFKQLCKEINITSVYTNHDYE 103
>gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase [Zunongwangia profunda SM-A87]
gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
profunda SM-A87]
Length = 429
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEM-------LELVIFA 97
+ +IWF+ +LRV D+ L A K++ V+ +Y FD R + + +I +
Sbjct: 3 TGLIWFENNLRVKDNKALFEACEKHEQVIAVYCFDPRKFKKTKYGFPKTGKFRAKFLIES 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+++L+++L + L+I + E +I E+ K +++ +EE +Q++A + + L
Sbjct: 63 IKNLQENLNQLNISLLIFLQKPEEIIPEIARNHKIEAIYFQEEWTTEEKQIIAALKKKLP 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK 193
+ + L+ + N++P + EFRK
Sbjct: 123 TIDFQSFYTQF-LFHPEDIAYGDFNEIPKVYTEFRK 157
>gi|372210250|ref|ZP_09498052.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium S85]
Length = 428
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
V WF++DLR D+ GL A V+P+++FD IL + + + AL + K
Sbjct: 6 VFWFRRDLRTFDNTGLNKALQSSNPVLPIFIFDEHILDELPIKDARVTFIYKALAAIDKE 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAI 151
LK+ S L++ G+ E V ++L ++ + VF ++ E Y L + AI
Sbjct: 66 LKKHQSSLLVLQGKPEEVWQQLFKDYQIQEVFTNKDYEPYALNRDRAI 113
>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein
[Herbaspirillum seropedicae SmR1]
Length = 494
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNE------MLELVIFALE 99
+++WF++DLR+ DH L A S+ + V ++VFD IL+ E ++ ++ ++
Sbjct: 7 SLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+L ++L+ G L++ G I L E+ +V+A + E + A V +TLAK
Sbjct: 67 ELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQTLAK 125
>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
Length = 492
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 39 TSKGRSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDH-----RILSRYSNEMLE 92
T+ +G V+W + DLR+DD+ L +AA + +VPL V D R L L
Sbjct: 11 TADQETGPIVVWLRDDLRLDDNPALALAAETNRPIVPLVVLDEESDGVRALGGAHKWWLH 70
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+LE SL+ +GS L +R G+ ++ + +++E+ A+++F + R + +
Sbjct: 71 ---HSLESFASSLRGKGSRLTLRRGKAKDQVLDVIEKTGASALFFNRRYDQASRAVDDAI 127
Query: 153 DETLA 157
E L
Sbjct: 128 GEALG 132
>gi|92429548|gb|ABD93518.2| DNA photolyase protein [Solanum peruvianum]
Length = 150
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 71 AVVPLYVFDHRILSRYSNEM-------LELVIFALEDLRKSLKEQGSDLMIRFGRVENVI 123
+V+ +Y FD R + S+ +I ++ DLRK+L+ +GSDL++R G+ E V+
Sbjct: 4 SVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIGKPETVL 63
Query: 124 RELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN--- 180
EL + V A +V+A EV + + +D + +G W + Y + +
Sbjct: 64 VELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKD----EGLEVKYFWGSTLYHVDDLPF 119
Query: 181 -LNDLPVSHNEFRK 193
L +P ++ FR+
Sbjct: 120 KLEQMPTNYGGFRE 133
>gi|296271918|ref|YP_003654549.1| deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM
7299]
gi|296096093|gb|ADG92043.1| Deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM
7299]
Length = 443
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WF++DLR+ D+ L AS V+P+++FD IL + + ++ + + A+ L+KSL
Sbjct: 4 ILWFRRDLRIIDNKILEKAS--NEVLPIFIFDKNILEKLDFDDKRVTFIYDAVLALKKSL 61
Query: 106 KEQGSDLMIRFGRVENVIRELVEE 129
+E G DL I F +NV +L E
Sbjct: 62 QELGLDLYIFFDTPKNVFTKLKNE 85
>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
Length = 434
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 32/204 (15%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKS 104
+ WF++DLR++D+ GL A + V+P+++FD IL + + L++LR
Sbjct: 7 IFWFRRDLRLEDNRGLCEALGAGRPVLPIFIFDSEILDGLPADDPRVTFLHDRLQELRSR 66
Query: 105 LKE-QGSDLMIRFGRVENVIRELVEEVKATSVF--------------------AEEEVEY 143
++E QGS L I G+ + +EL + VF +E+ +E+
Sbjct: 67 MQENQGSSLAIYHGKPLEIFKELASDWDVGQVFTNRDYEPYARDRDEQVGQWLSEQGIEF 126
Query: 144 HLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD--IKNLNDLPV-SHNEFRKLQRPLTS 200
H + I ++ +V DG P + TP+ + D P+ + + +L +
Sbjct: 127 HTFKDQVIFEKD--EVVKDDGDPYVVY--TPYMKKWKQVFRDTPLATFDSAGQLGNLIAH 182
Query: 201 PILP-PTLAGAKLEADWGPLPTFD 223
LP P LA E P+P +D
Sbjct: 183 SRLPNPDLADFGFERSAIPVPDYD 206
>gi|375014151|ref|YP_004991139.1| deoxyribodipyrimidine photolyase [Owenweeksia hongkongensis DSM
17368]
gi|359350075|gb|AEV34494.1| deoxyribodipyrimidine photolyase [Owenweeksia hongkongensis DSM
17368]
Length = 435
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 47 AVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALED---LR 102
+ WF++DLR++D+ GL A + V+P+++FD IL ++ V F ++ ++
Sbjct: 7 CIFWFRRDLRLNDNAGLYRALTSGLKVLPVFIFDTDILDELDDKKDARVHFIWQEVKSIK 66
Query: 103 KSLKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
K+L+E+ G+ L+++ G + ++LV E VF + E ++ V E L +
Sbjct: 67 KTLEEKHGTSLLVKHGSPLKIFKDLVSEFPVAEVFTNRDYEPSAKERDKAVYEFLKSKDI 126
Query: 162 V 162
V
Sbjct: 127 V 127
>gi|359409051|ref|ZP_09201519.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356675804|gb|EHI48157.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 512
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVF--DHRILSRYSNEMLELVIFALEDLRKS 104
++WFK+DLR++DH L AA+ AV+PLYV D+ S + L+ LR
Sbjct: 10 LVWFKRDLRIEDHAPLRAAAASGCAVLPLYVVEPDYWAQPFASRRQWGFIHDCLQGLRND 69
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L G L+++ G V +++ L +++ +V +E
Sbjct: 70 LAGLGQPLIVKTGDVTDILSVLADQLDIAAVHCHQET 106
>gi|390945121|ref|YP_006408882.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
gi|390418549|gb|AFL86127.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
Length = 433
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---LELVIFALEDLR 102
++ WF++DLR++D+ GL A + + V+PL++FD IL + ++ ++ + + ++
Sbjct: 5 SIFWFRRDLRLEDNTGLFYAFEQEENVLPLFIFDKNILDKLEDKKDRRVQFIYDQISNIS 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+ LK+ S +++++G V + L +E +++ + E
Sbjct: 65 EQLKDFESSILVKYGYPLEVFQSLFKEYTIQNIYTNRDYE 104
>gi|392415860|ref|YP_006452465.1| deoxyribodipyrimidine photolyase [Mycobacterium chubuense NBB4]
gi|390615636|gb|AFM16786.1| deoxyribodipyrimidine photolyase [Mycobacterium chubuense NBB4]
Length = 446
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA----VVPLYVFDHRILSRYSNEMLELVIFALEDLR 102
AV+WF++DLR+ DH L+AA+ V+ YV D R+ + L+ + AL DL
Sbjct: 3 AVLWFRRDLRLCDHPALLAAADVDGAGTDVLACYVLDPRLEASAGPRRLQYLYDALRDLD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+L G L++ G + I + + V A+SV + R+ V + L V LV
Sbjct: 63 SAL---GGRLLVTRGEPKRRIPAVAKAVGASSVHVSGDFTPFGRRRDDQVRDALGDVELV 119
Query: 163 ----------------DGKPKICLWQTPFYD 177
DG P TPF+D
Sbjct: 120 ATGSPYLVSPGRVTKGDGTPYKVF--TPFFD 148
>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
Length = 467
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 46 SAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLR 102
+ V W ++DLR+ D+ A ++ + +VPL+V D +L+ S + AL L
Sbjct: 3 TVVWWVRRDLRLHDNQALAAALTRARELVPLFVLDPALLAGPTSSQRRNAFLFAALRSLD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK---V 159
+L+ +GS L++R GR E V+ +V E AT V AE + + R+ DE +A+ +
Sbjct: 63 AALRRRGSRLIVRAGRPEQVLPTVVRESGATLVMAEADGSPYARRR----DEAVARSVPL 118
Query: 160 SLVDGKPKICLWQTPFYDIKNLNDLPVS-HNEFRK--LQRPLTSP 201
LV+G P I+ P +++FR+ + P+ SP
Sbjct: 119 QLVEGSTL-----RPLGSIRAPTGEPYRVYSQFRRAWFRLPIPSP 158
>gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
Length = 499
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--------SRYSNE-----ML 91
S ++WF++DLR DH L A ++ + V ++VFD IL +R+ E +
Sbjct: 13 SGLVWFRRDLRNTDHAALYYALEHCERVWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRI 72
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
+ ++ +L +L +L+ G L++ +G ++ +L E++ +VFA + E + A
Sbjct: 73 DFILASLAELDDALRANGGGLVVLYGDPAELVPKLAAELRVDAVFANHDYEPVAIERDAT 132
Query: 152 VDETLAK 158
V E LA+
Sbjct: 133 VGERLAE 139
>gi|448439506|ref|ZP_21588070.1| deoxyribodipyrimidine photolyase [Halorubrum saccharovorum DSM
1137]
gi|445691040|gb|ELZ43235.1| deoxyribodipyrimidine photolyase [Halorubrum saccharovorum DSM
1137]
Length = 495
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 52 KQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSD 111
++DLR+ D++GL AA+ V +VFD +L S+ + ++ L LR +++GSD
Sbjct: 7 RRDLRLADNVGLAAAADRGEVAGAFVFDPDVLDHASDVRVRRLLDGLAALRDDYRDRGSD 66
Query: 112 LMIRFGRVENVIRELVEEVKATSV 135
L++ G E+++ +L + V A V
Sbjct: 67 LLVARGDPESILPDLADAVDADRV 90
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 51 FKQDLRVDDHLGLVAASKYQAVV-PLYVFDHRILS---RYSNEMLELVIFALEDLRKSLK 106
F++ LR+ D+ L+AA + VV P+Y+ D ++ ++ +LEDLR SL+
Sbjct: 9 FRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLRSSLR 68
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ GS L++ G E+V+R+ V++ T V + E+E ++M A +
Sbjct: 69 QLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANI 114
>gi|392397553|ref|YP_006434154.1| deoxyribodipyrimidine photolyase [Flexibacter litoralis DSM 6794]
gi|390528631|gb|AFM04361.1| deoxyribodipyrimidine photolyase [Flexibacter litoralis DSM 6794]
Length = 452
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE---M 90
+ + +K + A+ WF++DLR+DD+ GL A + V+PL+++D IL ++
Sbjct: 2 SKSILNKNKKQLAIFWFRRDLRLDDNAGLYHALRSGFEVLPLFIYDTEILDDLEDKNDAR 61
Query: 91 LELVIFALEDLRKSLKEQ--GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L ++ L+ ++ L+++ S L I+ G+ + +EL+E+ V+ + E
Sbjct: 62 LTMIYRYLKKIKDELEDKKISSSLCIKIGKPIAIYKELIEKFDIKEVYTNHDYE 115
>gi|443490099|ref|YP_007368246.1| DNA photolyase, PhrI [Mycobacterium liflandii 128FXT]
gi|442582596|gb|AGC61739.1| DNA photolyase, PhrI [Mycobacterium liflandii 128FXT]
Length = 447
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+ DH L AA+ + V+ +V D R+ + L+ + +L L +L+
Sbjct: 4 ALLWFRRDLRLGDHPALAAAADSEEVLACFVVDPRLEASSGLRRLQFLGDSLRQLNDALQ 63
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV-DGK 165
+ L++ GR E I + + ++A+SV + R+ V L +V LV G
Sbjct: 64 GR---LLVTRGRPEQRIPLIAKAIEASSVHVTGDFAPFGRRRDERVAAGLGRVPLVATGS 120
Query: 166 PKICLWQTPFYDIKN 180
P + +P +KN
Sbjct: 121 PYLV---SPGRVVKN 132
>gi|372269296|ref|ZP_09505344.1| cryptochrome-like DNA photolyase [Alteromonas sp. S89]
Length = 434
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 48 VIWFKQDLRVDDHLGLV----AASKYQAVVPLYVFDHRILS-------RYSNEMLELVIF 96
++WF +LR D+ L +A+ V+ LY FD + S R + ++
Sbjct: 3 LVWFLHNLRSHDNQALTQACASANGDTPVIALYCFDPQFFSTDPFGFPRTGKFRAQFLLQ 62
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+LEDL++ L + L+IR G VI ELV E T +F + E R ++ +
Sbjct: 63 SLEDLKQQLADLNIPLLIRQGAPAQVIPELVTEHAVTELFLQREWTRDERTVLTSLQAAP 122
Query: 157 A--KVSLVDGKPKICLW--QTPFYDIKNLNDLPVSHNEFRKL---QRPLTSPILPPTLAG 209
A V + + + PF ++ +LP +FRK+ Q P+ SP+ P+
Sbjct: 123 AMDAVHIHTDYDQFLIHPDDLPFAEVA---ELPEVFTQFRKVIEQQLPIRSPLPTPSPRA 179
Query: 210 AK 211
AK
Sbjct: 180 AK 181
>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
Length = 523
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 124/288 (43%), Gaps = 32/288 (11%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEM--LELVIFALEDLR 102
+ + WF++ LR+ D+ LVAA + + + P++V D + + + + +I AL+DL
Sbjct: 4 TCIHWFRKGLRLHDNPALVAALRDCKEIYPVFVLDPYSPNNVNIGINRWKFLIGALKDLD 63
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAKVSL 161
SL++ S L + G+ + V +L ++ K T + E + E + LR+ D+ + +++
Sbjct: 64 CSLRKLNSRLFVVRGKTDEVFPKLFQKWKVTRLTYEYDTEPFSLRR-----DKEVGRLAE 118
Query: 162 VDGKPKICLWQTPFYDI-----KNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADW 216
G I Y+I +N P+++N + L + P P
Sbjct: 119 EHGVEIIYKVSHTLYNIDRIIEENNGKAPLTYNRLQTLVSSIGPPKRP------------ 166
Query: 217 GPLPTFDELKEFVNENPWKLEESW---TLINNMSAETILTDKLSKLGKRSKRNLNNQHSP 273
P PT D++K+ K EE++ TL LT++L G++ +QH
Sbjct: 167 IPAPTCDDMKDVKTPCSEKHEENYGISTLEKLYQDPESLTEELFPGGEQEALRRLDQHMA 226
Query: 274 RKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQE 321
RK F +K T + L Y+ + + R W L +
Sbjct: 227 RKEWVCGF---EKPQTSPNSLSPSTTVLSPYMTFGCLSARTFWWSLTD 271
>gi|421752089|ref|ZP_16189124.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753950|ref|ZP_16190937.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|421757672|ref|ZP_16194548.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|424674844|ref|ZP_18111758.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
gi|409085877|gb|EKM86003.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|409086093|gb|EKM86216.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|409092153|gb|EKM92132.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|417434518|gb|EKT89468.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
Length = 499
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L AS+ ++PLY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLASEKGDILPLYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L I G + +L+++ +V++ +E
Sbjct: 63 TKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQET 98
>gi|88807683|ref|ZP_01123195.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
gi|88788897|gb|EAR20052.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
Length = 493
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLR 102
G ++WFK+DLR+ DH L A V+PLY+ + + S+ S +L+DL+
Sbjct: 4 GLQLVWFKRDLRLVDHQPLARALARGPVLPLYIVEPELWSQPDCSARQWAFCRESLQDLQ 63
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
++ E G L+IR G +V+ ++ +++++ EE
Sbjct: 64 EAFAEVGQPLIIRSGDAVDVLERARRQLGISALWSHEET 102
>gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
Length = 447
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+ DH L AA+ + V+ +V D R+ + L+ + +L L +L+
Sbjct: 4 ALLWFRRDLRLGDHPALAAAADSEEVLACFVVDPRLEASSGLRRLQFLGDSLRQLNDALQ 63
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV-DGK 165
+ L++ GR E I + + ++A+SV + R+ V L +V LV G
Sbjct: 64 GR---LLVTRGRPEQRIPLIAKAIEASSVHVTGDFAPFGRRRDERVAAGLGRVPLVATGS 120
Query: 166 PKICLWQTPFYDIKN 180
P + +P +KN
Sbjct: 121 PYLV---SPGRVVKN 132
>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
Length = 418
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLEL----VIFALEDLRKSL 105
F++ LR+ D+ L+ A + A+ P+YV D R+ + + M L ++ +LEDL L
Sbjct: 9 FRKGLRLHDNPSLLGALASSSALYPVYVLD-RVFLQGAMHMGALRWRFLLQSLEDLDTRL 67
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG- 164
+ GS L + G N++RELV + T + + EVE + +M D+ + V+ +G
Sbjct: 68 QAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRM----DKDIQTVAQENGL 123
Query: 165 KPKICLWQTPFYDIK-----NLNDLPVSHNEFRKLQRPLTSPILP 204
+ C+ T YD+K N P+++ +F + L P P
Sbjct: 124 QTYTCVSHT-LYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKP 167
>gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 466
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILS-RYSNEMLELVI-FALEDLRK 103
AV+WF+ DLR+ D+ L AA++ + V+ LYV+D R E + +L L +
Sbjct: 11 AVVWFRDDLRLADNPALHAAAESGRPVICLYVWDEDSPGLRSPGEAARWWLHHSLTSLEE 70
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
S+ GS L IR G E V+ E++ EV A +VF
Sbjct: 71 SIGRAGSALAIRTGPAERVLAEVLAEVDAGAVF 103
>gi|56707953|ref|YP_169849.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670424|ref|YP_666981.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis FSC198]
gi|254370442|ref|ZP_04986447.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874757|ref|ZP_05247467.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717195|ref|YP_005305531.1| Deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725799|ref|YP_005317985.1| Deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis TI0902]
gi|385794604|ref|YP_005831010.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis NE061598]
gi|421755482|ref|ZP_16192426.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700075]
gi|56604445|emb|CAG45479.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320757|emb|CAL08862.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis FSC198]
gi|151568685|gb|EDN34339.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840756|gb|EET19192.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159139|gb|ADA78530.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis NE061598]
gi|377827248|gb|AFB80496.1| Deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis TI0902]
gi|377828872|gb|AFB78951.1| Deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis TIGB03]
gi|409088037|gb|EKM88120.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700075]
Length = 499
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L AS+ ++PLY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLASEKGDILPLYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L I G + +L+++ +V++ +E
Sbjct: 63 TKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQET 98
>gi|374851431|dbj|BAL54391.1| deoxyribodipyrimidine photo-lyase [uncultured gamma
proteobacterium]
Length = 491
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALE 99
R +A++WF++DLR+ D+ L+AA + + VVP+Y+ + + + +L
Sbjct: 3 RKNAALVWFRRDLRLTDNPALIAALTSHADVVPVYLHAPEEEAPWQPGAASRWWLHQSLS 62
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
L +SL+E+GS L+IR G + L +E A +V+ V+ +R+ A + L
Sbjct: 63 QLEQSLRERGSRLIIRLGPTLESLLALCQETGAAAVYWNRLVDPAVRRRDAQIVRALESC 122
Query: 160 SL 161
+
Sbjct: 123 GI 124
>gi|402820901|ref|ZP_10870463.1| deoxyribodipyrimidine photolyase [alpha proteobacterium IMCC14465]
gi|402510305|gb|EJW20572.1| deoxyribodipyrimidine photolyase [alpha proteobacterium IMCC14465]
Length = 516
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSR-YSNEMLELVI-FALEDLRKS 104
++WFK+DLRV DH L AAS V+PLYV + ++ +++E + +L +LRK
Sbjct: 6 IVWFKRDLRVQDHAPLKAASMSGNGVLPLYVVEDDYWAQPFASERHWFFLETSLAELRKD 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++R G V V+ +L + +V+A EE
Sbjct: 66 CASLGMPLIVRAGDVCAVLADLKQTFDLQAVYAHEET 102
>gi|448747406|ref|ZP_21729066.1| Cryptochrome, DASH [Halomonas titanicae BH1]
gi|445565098|gb|ELY21211.1| Cryptochrome, DASH [Halomonas titanicae BH1]
Length = 481
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 36/204 (17%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL---------SRYSNEMLELVIFAL 98
++W + DLR+ D+ L AS ++ +YV D R R L + +L
Sbjct: 7 IVWLQDDLRIADNPLLHFASPPSYLMCIYVLDERWFLPLFDGESTPRIGPARLRFLWQSL 66
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+LR L ++GSDL++R G+ +V+ EL ++ A V + + V++ L
Sbjct: 67 MELRGELLKRGSDLLVRIGKPSDVVIELASKLNAREVRVADHAGVEEFAHIQAVEQGLPS 126
Query: 159 VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQR-----------PLTSPI- 202
+ ++ C+ D+K L LP S + FR+ P+T P
Sbjct: 127 QTALN-----CIESGRLIDLKALPFEREALPGSFSAFRRSVESECAVPASRCAPITLPPW 181
Query: 203 ------LPPTLAGAKLEADWGPLP 220
PP A + A W P P
Sbjct: 182 PEAARGFPPLKAVCEQSATWQPDP 205
>gi|400537115|ref|ZP_10800649.1| deoxyribodipyrimidine photo-lyase [Mycobacterium colombiense CECT
3035]
gi|400330128|gb|EJO87627.1| deoxyribodipyrimidine photo-lyase [Mycobacterium colombiense CECT
3035]
Length = 442
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+ DH L+AA++ V+ +V D R+ L + +L LR L
Sbjct: 3 ALLWFRRDLRLRDHPALLAAAENDGVLACFVLDPRLEKSSGQRRLRYLGDSLRRLRDDLD 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+ L++ G+ I + +E+ A+SV E+ ++ V L V LV
Sbjct: 63 GR---LLVTRGQPHTQIPRIAKEIDASSVHVSEDFTPFGKRRDERVRAALDSVPLV 115
>gi|448299592|ref|ZP_21489601.1| DNA photolyase FAD-binding protein [Natronorubrum tibetense GA33]
gi|445587567|gb|ELY41825.1| DNA photolyase FAD-binding protein [Natronorubrum tibetense GA33]
Length = 461
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ--AVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ W ++D R+ D+ GL AA+ VVP++V D + + V AL LR+
Sbjct: 3 LFWHRRDRRLADNCGLAAAASRDDGPVVPVFVIDPIVTATLGERKRAFVDRALRTLREQY 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+++GSDL++R G V+ L A V + E E R+ V+ L
Sbjct: 63 RDRGSDLVVRTGSAAEVLPSLSAAYDADHVVSNECFEPTRREQARAVESAL 113
>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
Length = 486
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
++++WF+QDLRV D+ L A++ V+P++++D S + + L +L
Sbjct: 9 TSIVWFRQDLRVADNAALYHAAQEGPVIPVFIWDDAAPLTNSQAIGAAGKWWLHHSLTAL 68
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+EQ DL++ G V++EL E KA +V
Sbjct: 69 REQLGDLVVLRGDPATVLQELALETKAEAV 98
>gi|253999882|ref|YP_003051945.1| deoxyribodipyrimidine photo-lyase [Methylovorus glucosetrophus
SIP3-4]
gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus glucosetrophus
SIP3-4]
Length = 481
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRY---SNEMLELVIFALE 99
S A++WF++DLR DH L A K + V +VFD IL ++ +E + ++
Sbjct: 4 SSYALVWFRRDLRDFDHAALYHALKAHTHVYCAFVFDTDILDALPDRADRRVEFIWESVR 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+++L+ QG DL++ + I L ++KA +V++ + E
Sbjct: 64 ELQQALRSQGGDLIVLHACAKEAIPALAVKLKANAVYSNRDYE 106
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+LGL AA K VV ++ D IL+ + + +I +L +L+++
Sbjct: 7 LFWHRRDLRIRDNLGLAAARKRTPKVVGVFCLDPGILNGDDIAPARVSYMIGSLAELQEN 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
+ GS+L+I G+ E I L + A +V+ +VE + R+
Sbjct: 67 YQSAGSELLILKGKPEEAIPNLASALGAAAVYWNRDVEPYARE 109
>gi|406025137|ref|YP_006705438.1| deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432736|emb|CCM10018.1| Deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 476
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEM---LELVIFALEDLR 102
A++W +++LR+ D+ AA ++ V+P+++FD IL ++ N L + L L
Sbjct: 5 AIVWLRRNLRLQDNKPFAAALRHVDKVLPIFIFDTTILKQFPNPYDRRLSFLAHTLCLLH 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+LK L + G +I +LV ++K +++A+E+ E
Sbjct: 65 DALKRLEGSLFVFHGTPLEIIPKLVNDLKVEAIYADEDYE 104
>gi|149916244|ref|ZP_01904765.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
gi|149809904|gb|EDM69755.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
Length = 494
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
+ WFK+DLR+ DH L A+ V+P+Y+ + + + S + L DLR+ L
Sbjct: 2 ICWFKRDLRIADHPALHMAAGLGPVLPVYILEPELWRQDDASGRQYAFLTECLTDLREDL 61
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++R G V+ +L A + + EE
Sbjct: 62 ARAGLSLVLRVGDAVEVLDDLRRSFGAAHLVSHEET 97
>gi|449015358|dbj|BAM78760.1| cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 598
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 140/351 (39%), Gaps = 68/351 (19%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRIL-----------SRYSNEMLEL 93
++WF+ DLRV DH L+ A A ++P+YVFD R + S+ S +
Sbjct: 4 GLVWFRNDLRVRDHEALLTACLEHAGRIIPVYVFDKRQVGPHARTRLGQFSKCSTPRAQF 63
Query: 94 VIFALEDLRKSLKE--QGSDLMI-RFGRVENVIRELVEEVKATSVFAEEEVEYH---LRQ 147
++ A++DL +L+ +G L++ + ENVI +L+ E+ V YH +
Sbjct: 64 LVEAVQDLANTLRTHYRGMQLLVYKNALPENVIPKLIAELSTEKQVHVGAVYYHREVCSE 123
Query: 148 MMAIVDETLAKVSLVDGK---PKICL----WQTPFYDIKNL------NDLPVSHNEFRKL 194
A+ D A + ++ + P + L + Y +L ++P +RKL
Sbjct: 124 ERAVEDALRAALCALNQRGELPAVTLRALDGSSTLYHADDLPSGASVGNMPPVFTSWRKL 183
Query: 195 QRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
GA++ A PLP D P K++ L ++ + I T
Sbjct: 184 -----------VEKGARIRA---PLPMPD---------PAKVQ---PLPLSLGCDPIPTC 217
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVG--GGTNAVLNALQAYLRYLEGTV 312
+G ++ P D + D + GG +A +QAY +
Sbjct: 218 AREVIGDNCEQARLRHRVPWTLPDDATSRVDPRHACPFRGGESAAQERVQAYTFGTDAIA 277
Query: 313 RDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
R + RN G ++T + P L LG ++ R ++ ++E ER
Sbjct: 278 R------YKATRNGLL--GTEYSTKWSPYLALGNVTPRQLYAVLRRYETER 320
>gi|134302253|ref|YP_001122222.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421759522|ref|ZP_16196354.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|134050030|gb|ABO47101.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409090903|gb|EKM90911.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
Length = 499
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L AS+ ++PLY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLASEKGDILPLYIIELELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L I G + +L+++ +V++ +E
Sbjct: 63 TKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQET 98
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 28 CVCCVSPTA----AATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI 82
CVC SP++ TS ++IWF++ LRV D+ L ASK + + P++V D
Sbjct: 5 CVC--SPSSYRLNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHY 62
Query: 83 L-----------SRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVK 131
+ SR + ++ +L+DL SLK+ GS L++ G V+ ++E K
Sbjct: 63 MESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWK 122
Query: 132 ATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDI-KNLNDLPVSHNE 190
+ E + + + + + V + + + P P + I KN P+S+
Sbjct: 123 VKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQS 182
Query: 191 FRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEF-VNENPWKLEE 238
F K+ P+ A ++L + LP ++ ++E P LEE
Sbjct: 183 FLKVAG-------EPSCAKSELVMSYSSLPPIGDIGNLGISEVP-SLEE 223
>gi|414173991|ref|ZP_11428618.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
gi|410890625|gb|EKS38424.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
Length = 484
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLEL----VIFALEDLR 102
++WF+ DLR+ DH L A++ A +V LYV D ++ + + +L L+
Sbjct: 10 IVWFRDDLRLSDHPALHDAAQSGAPLVCLYVLDEEGSPQHGRPIGSASRWWLAQSLRSLQ 69
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139
SL +G L +R GR VI +L +E++A++V E
Sbjct: 70 GSLTARGQSLTLRRGRPARVIADLAQEIRASAVHWNE 106
>gi|78212258|ref|YP_381037.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
gi|78196717|gb|ABB34482.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
Length = 493
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR+ DH L AA + V+PLYV + + + S +L +LR++L
Sbjct: 6 IVWFKRDLRIVDHQPLAAAVERGLVLPLYVVEPELWRQPDASERQWMFCRESLLELRQAL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
++G L++R G V V+ + +++ EE
Sbjct: 66 ADRGQPLVVRAGDVVQVLERARRQFGIDGLWSHEET 101
>gi|332292002|ref|YP_004430611.1| DNA photolyase FAD-binding protein [Krokinobacter sp. 4H-3-7-5]
gi|332170088|gb|AEE19343.1| DNA photolyase FAD-binding protein [Krokinobacter sp. 4H-3-7-5]
Length = 510
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDH--RILSRYSNEMLELVIFALEDLRKS 104
++WFK+DLR+ DHL L A + Q ++ LY+ + + YS+ + +L +L+K
Sbjct: 18 IVWFKRDLRLHDHLPLYNALQEGQPLLLLYILEPSLEVDPHYSDRHFNFIKESLLNLQKE 77
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
LK + ++I V + +EL++ K +VF+ +E
Sbjct: 78 LKAFNTKILIIHDEVVSAFKELIKHYKIHTVFSHQET 114
>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
Length = 495
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKS 104
++WF++DLR DH L A + + V ++FD IL ++ +E + +L++L +
Sbjct: 8 LVWFRRDLRSFDHAALHHALRQGRQVYCAFIFDRAILDELPSTDRRVEFIHASLQELDTA 67
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L+ G L++R R E I +L E+ +VF + E
Sbjct: 68 LRALGGGLIVRHARAEQAIPQLAAELGVDAVFCNHDYE 105
>gi|118496971|ref|YP_898021.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194324200|ref|ZP_03057974.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTE]
gi|118422877|gb|ABK89267.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194321647|gb|EDX19131.1| deoxyribodipyrimidine photolyase family protein [Francisella
tularensis subsp. novicida FTE]
Length = 499
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L A++ ++PLY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLAAEKGDILPLYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++ G V +L+++ SV++ +E
Sbjct: 63 TRLGQPLILMIGDAVEVFEQLIQQYPINSVWSHQET 98
>gi|311280415|ref|YP_003942646.1| deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
gi|308749610|gb|ADO49362.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
Length = 471
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 16/124 (12%)
Query: 48 VIWFKQDLRVDDHLGLVAASK--YQAVVPLYVF------DHRILSRYSNEMLELVIFALE 99
++WF+ DLR+ D+L L AA + Y V+ L++ HR+ R + + L
Sbjct: 5 LVWFRADLRLHDNLALAAACRDSYAKVLALFIATPGQWRQHRMAPRQA----AYIQAQLN 60
Query: 100 DLRKSLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
DL+++L ++G L++R F VIR++ E K +S++ + E + R+ A V++
Sbjct: 61 DLQRNLADKGIPLLLREAEDFAASAQVIRQVCNEHKVSSLYYNYQYELNERRRDARVEKA 120
Query: 156 LAKV 159
L V
Sbjct: 121 LKDV 124
>gi|433647152|ref|YP_007292154.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
gi|433296929|gb|AGB22749.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
Length = 426
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ D L+ AA+ V+ Y+ D R+ + L+ + AL DL +SL
Sbjct: 4 LLWFRRDLRLHDLPPLLDAAASDGEVLACYLLDPRLTASAGPRRLQYLYDALRDLHESLD 63
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL----- 161
+ L + GR E VI +L +E+ A+SV + R+ V L V+L
Sbjct: 64 GR---LHVTRGRPEKVIPKLAKEIGASSVHVSADYSPFGRRRDVAVRSALGDVALEEAGS 120
Query: 162 -----------VDGKPKICLWQTPFYD 177
DG P TPF+D
Sbjct: 121 PYLVSPGRVAKSDGTPYKVF--TPFFD 145
>gi|344942901|ref|ZP_08782188.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
gi|344260188|gb|EGW20460.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
Length = 453
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRY---SNEMLELVIFALED 100
+++ F++DLR+ D+ L+ A + V+P ++FD R + + S L+ ++ +++D
Sbjct: 5 STSLFIFRRDLRLQDNTALLEALRLSGQVIPCFIFDPRQIEPHPYQSKPGLQFMLQSIQD 64
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L++ L+ G L + E V+R+LVE+ + +VF
Sbjct: 65 LQQQLQSAGGKLALYHALPEQVVRQLVEQQQIQAVF 100
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLEL----VIFALEDLRKSL 105
F++ LR+ D+ L+ A + + P+YV D R+ + + M L ++ +LEDL L
Sbjct: 30 FRKGLRLHDNPSLLGALASSSTLYPVYVLD-RVFLQGAMHMGALRWRFLLQSLEDLDTRL 88
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG- 164
+ GS L + G N++RELV + T + + EVE + +M D+ + V+ +G
Sbjct: 89 RAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRM----DKDIQTVAQENGL 144
Query: 165 KPKICLWQTPFYDIK-----NLNDLPVSHNEFRKLQRPLTSPILP 204
+ C+ T YD+K N P+++ +F + L P P
Sbjct: 145 QTYTCISHT-LYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKP 188
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLEL----VIFALEDLRKSL 105
F++ LR+ D+ L+ A + + P+YV D R+ + + M L ++ +LEDL L
Sbjct: 9 FRKGLRLHDNPSLLGALASSSTLYPVYVLD-RVFLQGAMHMGALRWRFLLQSLEDLDTRL 67
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG- 164
+ GS L + G N++RELV + T + + EVE + +M D+ + V+ +G
Sbjct: 68 RAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRM----DKDIQTVAQENGL 123
Query: 165 KPKICLWQTPFYDIK-----NLNDLPVSHNEFRKLQRPLTSPILP 204
+ C+ T YD+K N P+++ +F + L P P
Sbjct: 124 QTYTCISHT-LYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKP 167
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS---RYSNEMLELVIFALEDLRKSLK 106
F+++LR+ D+ L+AA +A+ P+Y+ D L+ ++ +LEDL K+L
Sbjct: 9 FRKELRLHDNPVLLAALESSEALYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLG 68
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP 166
+ GS L++ G E V+R+ +++ T V + E+E ++M A + A++ G
Sbjct: 69 QLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGAEL----GFE 124
Query: 167 KICLWQTPFYDIKNLNDL-----PVSHNEFRKLQRPLTSPILP 204
+ L Y+ + + DL P+++ F + L P LP
Sbjct: 125 VLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPELP 167
>gi|403349181|gb|EJY74032.1| putative bacterial cryptochrome [Oxytricha trifallax]
Length = 593
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 145/342 (42%), Gaps = 73/342 (21%)
Query: 39 TSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQA----VVPLYVFDHRI----LSRYSNEM 90
+S + ++WF+ DLR+ D+ + A K+ A +VP++ +D R + ++ +
Sbjct: 65 SSNNKMQRIILWFRNDLRLHDNAIINYAVKHSAPNKQIVPVFCYDPRFHAKKVQQFGTQK 124
Query: 91 LELV-----IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
LV I +E+ R +L++ GS L++ R E I +L+++ ++ ++E+
Sbjct: 125 CGLVRQRFLIETVENFRHNLEKMGSKLLVSMERPEEFIPKLIDQECDNTIVYQDEI---C 181
Query: 146 RQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSP 201
+ MA+ E + S K W + Y + +L + LP + +FR++ +
Sbjct: 182 SEEMAV--ERAVQKSCKGANVK-TFWGSSVYHVDDLGFEIDHLPQVYTKFREVCGRVPVR 238
Query: 202 ILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGK 261
L P G LP F+ ENP + M+ TI + +L G
Sbjct: 239 SLFPNPKN-------GDLP-------FI-ENPSDI---------MTKATIFSPQLEDFG- 273
Query: 262 RSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQE 321
+K + R ++ F+ GG +A L + Y+ E Q
Sbjct: 274 FTKEQIALGKDKRSVIE---FI--------GGEDAALKRFKEYV-----------YETQA 311
Query: 322 KLRNAESRD---GASFATLFGPALCLGIISRRGVHYEAIKFE 360
A++R+ G + ++ F P + G +S R ++++ ++E
Sbjct: 312 VSHYADTRNELLGENVSSRFSPWMAHGSLSPRYIYHKVKEYE 353
>gi|383450756|ref|YP_005357477.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium indicum
GPTSA100-9]
gi|380502378|emb|CCG53420.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium indicum
GPTSA100-9]
Length = 428
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRK-- 103
+ WF++DLR++D+ L A ++ + V+P+++FD IL ++ ++ V F ++L K
Sbjct: 2 TIFWFRRDLRLEDNTALFHALNENEEVLPIFIFDTTIL-KHLDKQDARVSFIHQELNKIN 60
Query: 104 -SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
LK G L + +G E + +L+ E +V+A + E R+ V+E L
Sbjct: 61 LKLKSIGKSLALFYGTPEEIFNQLIAENSIEAVYANHDYEPAARKRDKSVNELL 114
>gi|448414324|ref|ZP_21577463.1| deoxyribodipyrimidine photolyase [Halosarcina pallida JCM 14848]
gi|445682617|gb|ELZ35034.1| deoxyribodipyrimidine photolyase [Halosarcina pallida JCM 14848]
Length = 468
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP +VFD +L+ + ++ AL LR+ +E+G
Sbjct: 5 WHRRDLRASDNRGLAAAADADEVVPAFVFDDDVLAHAGAARVRFMLDALAGLREQYRERG 64
Query: 110 SDLMIRFGR-VENVIR 124
SDL++ G VE + R
Sbjct: 65 SDLVVARGDPVEEIPR 80
>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
Length = 485
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLEL-----VIFA 97
+ +A++WF+ DLR+ DH L+AA A ++ LYV D ++ L + +
Sbjct: 5 AATAIVWFRDDLRLSDHAALIAARDAGATLICLYVLDDTETGKHGPRSLGAAAQWWLANS 64
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L L LK+ G L++R G V+ +L E A +VF
Sbjct: 65 LRALDTDLKKLGQHLVLRRGDAHEVLPKLAREANAKAVF 103
>gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
Length = 500
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLE 92
P + GR ++WF++DLR D+ L A K+ + V ++V+D IL N+
Sbjct: 10 PLSTQPKPGRYSKGLMWFRRDLRTHDNAALFYALKHCEQVHCVFVYDKTILDALPNKADR 69
Query: 93 LVIFALED---LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
V F E L+ L+ G DL + + E I +L ++ +VF ++ E
Sbjct: 70 RVEFIWESCMALKTKLQGFGGDLHLMYDHAETAIPDLATKLGVQAVFTNKDYE 122
>gi|365848594|ref|ZP_09389068.1| deoxyribodipyrimidine photo-lyase [Yokenella regensburgei ATCC
43003]
gi|364570476|gb|EHM48087.1| deoxyribodipyrimidine photo-lyase [Yokenella regensburgei ATCC
43003]
Length = 474
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 16/126 (12%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY--QAVVPLYV------FDHRILSRYSNEMLELVIFA 97
+ ++WF+ DLR+ D+L L AA ++ V+ LY+ H++ R + +
Sbjct: 3 THLVWFRNDLRIHDNLALAAACRHPNATVLALYIATPGQWHQHQMAPRQA----AFIQSH 58
Query: 98 LEDLRKSLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
L L+++L E+G L+++ F V+RE+ E + ++F + E + RQ A V+
Sbjct: 59 LNSLQQALGERGIPLLVKAVDDFAASITVLREVCETHRVDALFYNYQYEINERQRDAAVE 118
Query: 154 ETLAKV 159
+TL+ V
Sbjct: 119 KTLSNV 124
>gi|296135391|ref|YP_003642633.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
gi|295795513|gb|ADG30303.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
Length = 493
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
A++WFK+DLRV DH L AA++ A + L+V + ++ + ++ + LR+S
Sbjct: 5 ALVWFKRDLRVQDHAALHAAAQCDAALALFVMEPEWIASPECDAQHVQFAADCVAALRES 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + G L++R G V V + E++ T +F+ EE
Sbjct: 65 LTQAGLRLLVRVGDVPQVFEGVRREMRFTHLFSHEET 101
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFD--HRILSRYSNEMLELVIFALE 99
+ A++WF++DLR+DD+ L AA + V+P+Y+ + H + + +L
Sbjct: 5 KPAPAILWFRKDLRLDDNPALHAAIEAGGPVIPVYIREPAHLNIGPLGAAQAWWLHHSLA 64
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L+ SLK DL+ G+ E+V+ +LV + A +VF E
Sbjct: 65 ALKASLKSLSGDLIFISGKAEDVLTDLVRKTNAKTVFVNRAYE 107
>gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB
48]
gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
48]
Length = 484
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 19/148 (12%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVI-FALEDLRK 103
+ ++WF+ DLR+ DH G+ A + VVP+Y++D ++ R + + +L L +
Sbjct: 4 TTILWFRSDLRLQDHEGVEATLNSGSPVVPVYIYDEQLAQRPLGAASKWWLDRSLRSLDQ 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA------ 157
SL+ +G+ L++ G ++ L+ +V AT + A E + A + + L
Sbjct: 64 SLRARGARLIVLKGSALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSKALGIPVEIF 123
Query: 158 ---------KVSLVDGKPKICLWQTPFY 176
++ DG P TPFY
Sbjct: 124 NTHLLSDPTQIRTGDGNPYKVF--TPFY 149
>gi|383645238|ref|ZP_09957644.1| deoxyribodipyrimidine photo-lyase [Sphingomonas elodea ATCC 31461]
Length = 457
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD-----HRILSRYSNEMLELVIFAL 98
S ++WF++DLR+ D L AA V+P+YV D HR + S L +L
Sbjct: 2 SAPVLLWFRRDLRLADQPALAAALAAGTVIPVYVLDDETAKHRAMGGASRWWLH---HSL 58
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L L+E+GS L++R G+ + + L EEV A +V
Sbjct: 59 ASLDADLREKGSRLILRRGKSDEELARLAEEVGAATV 95
>gi|408491986|ref|YP_006868355.1| cryptochrome, DASH family Cry1-like protein [Psychroflexus torquis
ATCC 700755]
gi|408469261|gb|AFU69605.1| cryptochrome, DASH family Cry1-like protein [Psychroflexus torquis
ATCC 700755]
Length = 436
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 123/327 (37%), Gaps = 69/327 (21%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFD--HRILSRYSNEMLE-----LVIFAL 98
++WF+ DLR D L A + + AV+ +Y FD H +RY + E +I ++
Sbjct: 8 TIVWFRNDLRTRDQKSLFDACQSENAVLGVYCFDPSHFETTRYGFKKTEKYRAKFLIESV 67
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
E L +L++ L I V +EL E TSVF + E +++ A V L
Sbjct: 68 EQLSDNLQDLNISLHIAHKHPSEVFKELSERYAITSVFYQTEWTREEKRVEAKVKSALPN 127
Query: 159 VSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK---LQRPLTSPILPPTLAGAKLEAD 215
++ + L+ ++ D+P + FRK Q + + P
Sbjct: 128 ADFIENYDQF-LFHPEDLPYESFQDIPEVYTNFRKKCEKQSEVRQKVPAPQ--------- 177
Query: 216 WGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRK 275
P PT L+E N+ P ++++ E TD S + N K
Sbjct: 178 --PRPTHHLLEE-RNQAP--------NLSDLGLENFETDPRSAFPFKGGEN-----EAWK 221
Query: 276 RLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFA 335
R++ F+ T K LQ Y + G + G ++
Sbjct: 222 RIEHYFWDTKK--------------LQYYKKTRNGLL------------------GTDYS 249
Query: 336 TLFGPALCLGIISRRGVHYEAIKFEKE 362
+ F L G IS +++E FEK+
Sbjct: 250 SKFSAWLANGSISAVSIYHEVRAFEKQ 276
>gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 482
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---LELVIFALEDL 101
S ++WF++DLR DH L A + + V +VFD IL +E +E + +L +L
Sbjct: 3 SILVWFRRDLRDSDHAALCEALRRGRRVFCAFVFDREILDALDHEADRRVEFIRESLVEL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+L+ +G L++R G I +L + +VF + E +Q A V L
Sbjct: 63 DAALRTRGGALLVRHGWATREIPDLARGLGVAAVFVNRDYEPGAKQRDAAVSAAL 117
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 28 CVCCVSPTA----AATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI 82
CVC SP++ TS ++IWF++ LRV D+ L ASK + + P++V D
Sbjct: 5 CVC--SPSSYRLNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHY 62
Query: 83 L-----------SRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVK 131
+ SR + ++ +L+DL SLK+ GS L++ G V+ ++E K
Sbjct: 63 MESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWK 122
Query: 132 ATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDI-KNLNDLPVSHNE 190
+ E + + + + + V + + + P P + I KN P+S+
Sbjct: 123 VKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQS 182
Query: 191 FRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEF-VNENPWKLEE 238
F K+ P+ A ++L + LP ++ ++E P LEE
Sbjct: 183 FLKVAG-------EPSCAKSELVMSYSSLPPIGDIGNLGISEVP-SLEE 223
>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
Length = 1025
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 48 VIWFKQDLR------VDDHLGLVAASKYQAVVPLYVFDHRILS-------RYSNEMLELV 94
V+WF+ DLR V D + V + V+P+Y FD R+ + +
Sbjct: 11 VLWFRNDLRLHDNYIVHDAVQRVKRGEASEVLPVYCFDPRVYGTTPWGHFKTGAHRAAFL 70
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS-VFAEEEV 141
+ + DL+ L++ GSDL++ FG+ E V+ L+E S V EEV
Sbjct: 71 LECVTDLKSRLRDVGSDLLVAFGKPEEVLPGLLEGSSGPSLVLTAEEV 118
>gi|335436625|ref|ZP_08559418.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
gi|334897588|gb|EGM35719.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
Length = 470
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA----VVPLYVFDHRILSRYSNEMLELVIFALEDLRK 103
+ W ++DLRV D+ GL A +A V+P +VFD +L+ + ++ A+ +LR
Sbjct: 3 IHWHRRDLRVADNRGL-AGDNIEAGEGPVLPAFVFDPAVLAHAGPPRVAALLEAVSELRD 61
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ +E+GSDL++ G + V+ L +E A V + R+ A V E L +
Sbjct: 62 AYRERGSDLVVARGDPQTVLPTLADEFGAERVTWNRDYTRLGRKRDAAVREALDDAGV 119
>gi|448456915|ref|ZP_21595571.1| DNA photolyase FAD-binding protein [Halorubrum lipolyticum DSM
21995]
gi|445811512|gb|EMA61519.1| DNA photolyase FAD-binding protein [Halorubrum lipolyticum DSM
21995]
Length = 469
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++D R D+ GL AA++ V+P++V+D + V +E L +E
Sbjct: 3 VFWHRRDPRTRDNAGLAAAARAGTVLPVFVYDADLFETLGGRQRAFVRRHVERLEARYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV-DGKP 166
GSDL++R G E V+ +L +E A + + E R VD L +V +G
Sbjct: 63 LGSDLVVRVGDPEEVLVDLADEHGAETAWYNEYYSPARRDRQRAVDAALGSAGVVTEGHT 122
Query: 167 KICLWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSPILPPTLAGAKLEADWGPLPTFD 223
L D L + +H FR+ P P P A D G +P D
Sbjct: 123 DAVL-----VDPSRLAERYPNHGRFREDWDAVPKRDPYPEPEPAALATVRDGGTIPERD 176
>gi|331672227|ref|ZP_08373018.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
gi|331070422|gb|EGI41786.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
Length = 472
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA +Y + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F +++++ E + T +F + E + R A V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERTLRNV 124
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLRV D++GL A K +V L+ D +L+R + + ++ L+ L+KS
Sbjct: 6 IFWHRRDLRVSDNIGLSQAYQKSSKLVGLFCLDSNLLNRDDIAPARVNYMLGCLQHLQKS 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
++ GS L+I G +I ++ + + VF +VE + ++ V E L + S+
Sbjct: 66 YQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNNDVEPYSKERDKQVKEALEEKSI 122
>gi|415836573|ref|ZP_11518924.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1]
gi|417284189|ref|ZP_12071484.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3003]
gi|425276541|ref|ZP_18667881.1| FAD binding domain of DNA photolyase [Escherichia coli ARS4.2123]
gi|323191055|gb|EFZ76320.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1]
gi|386242398|gb|EII84133.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3003]
gi|408206683|gb|EKI31461.1| FAD binding domain of DNA photolyase [Escherichia coli ARS4.2123]
Length = 472
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA +Y + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F +++++ E + T +F + E + R A V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERTLRNV 124
>gi|97047983|sp|Q7UJB1.2|CRYD_RHOBA RecName: Full=Cryptochrome DASH
Length = 488
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 20/197 (10%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFA 97
+A++WF+ DLR DH + AS ++ D R R +I
Sbjct: 2 ANALVWFRNDLRTIDHEPFLRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIEN 61
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH----LRQMMAIVD 153
L DLR L+ G +L++R GR E V++ L+ + +V E + + D
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCD 121
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK---LQRPLTSPILPPTLAGA 210
+ + G I + PF + D P +FRK Q SP+ P
Sbjct: 122 QHGIATHVAYGDTLIHPDELPF----EIADTPELFTDFRKEIEKQCEARSPLEEPIRIHG 177
Query: 211 KL--EADWGPLPTFDEL 225
L E + G +PT + L
Sbjct: 178 TLPEEVNAGDIPTLESL 194
>gi|372222172|ref|ZP_09500593.1| cryptochrome-like DNA photolyase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 441
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 29 VCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSN 88
+ C + A + SA+IWF+ +LR D+ LV ASK++ ++ +Y + +
Sbjct: 1 MYCTAAKNAEKTNSLKDSAIIWFRNNLRTQDNKTLVEASKHKQLIAVYTISPNLFKKNKY 60
Query: 89 EMLEL-------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138
+L ++ +L DL++ LK L+ + E ++ EL+++ K +++ +
Sbjct: 61 GFTKLGKYRAKFLLESLRDLKEQLKTYNISLICKVALPEQLLPELIKKYKINTLYLQ 117
>gi|334143259|ref|YP_004536415.1| DNA photolyase FAD-binding protein [Thioalkalimicrobium cyclicum
ALM1]
gi|333964170|gb|AEG30936.1| DNA photolyase FAD-binding protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 527
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 48 VIWFKQDLRVDDHLGL------VAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALE 99
++WFK+DLR+ DH L ++ AV+P+YVF+ + + + + V L
Sbjct: 14 LVWFKRDLRIHDHTPLHFAAQQAQHTQQGAVLPVYVFEPELWQQPDASLRQWRFVADCLV 73
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
DL L+ G LM G VE V +L ++ ++V++ +E
Sbjct: 74 DLDADLRSLGQGLMFAIGEVETVFSQLRQQYHISAVWSHQET 115
>gi|163801389|ref|ZP_02195288.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4]
gi|159174878|gb|EDP59678.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4]
Length = 493
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DHL L A S + LYVF+ +L YS V +L+D+
Sbjct: 6 LLWLKRDLRLTDHLALQHALSSGHPTLLLYVFEPMLLEDPHYSERHWRFVWQSLQDMNAQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + G +++ G V + + + + ++VF+ +E+
Sbjct: 66 LADYGQHILVLSGNVVDCLSAIQTQFDISAVFSHQEI 102
>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
Length = 487
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI--LSRYSNEMLELVIFALEDLR 102
++++ + DLR+ DH L AA + + VVPL+V D I + ++ + L DL
Sbjct: 3 ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVGFHAANRAAFLADCLGDLD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
L+E+G L++R G V+RELV A V V + R
Sbjct: 63 AGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYAR 106
>gi|376316713|emb|CCG00097.1| deoxyribodipyrimidine photo-lyase type I [uncultured Flavobacteriia
bacterium]
Length = 433
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVV-PLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
A+ W ++DLR +D+ GL A K VV +++FD IL + +++ + + ++++L+K
Sbjct: 4 ALFWHRRDLRFEDNAGLFQAQKKADVVQAVFIFDITILDKLLKNDQRIIFIHRSIQNLKK 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDE 154
+ G DL + G + +I ++ +E+K SV+ + E Y L + I D+
Sbjct: 64 EYQRFGGDLKVYHGDPKELIPKIAKELKVDSVYTNRDYEPYALERDKFIFDK 115
>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisA53]
gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisA53]
Length = 483
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 47 AVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDH-----RILSRYSNEMLELVIFALED 100
+++WF+ DLR+ DH L AAS + V+ LYV D R L + L +L
Sbjct: 9 SLVWFRDDLRLSDHPALNAAASSGRPVLCLYVLDEQSPGGRPLGGAARWWLAQ---SLRS 65
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L++ L E+G+ LM+R G V+ L E A V+ + R + A + TLA
Sbjct: 66 LQQILSERGATLMLRRGAAAQVVAGLARETNAEVVYYNDIAMAPARTVAAELAATLA 122
>gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
MED134]
Length = 436
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+ WF++DLR+DD++G + A K V+P+++FD IL + + + + L+ +R
Sbjct: 7 TIFWFRRDLRLDDNVGFLEALKGDYPVLPIFIFDKEILDKLPEDDARVTFIYNELQKMRD 66
Query: 104 SLK-EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+ E S L + + E + +EL+ + +V + E
Sbjct: 67 TLQAEHDSSLAMFYSTPEQIFKELIADYDVQAVITNRDYE 106
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL A + A V+ ++ FD ++L + + ++ ++ L++L+++
Sbjct: 5 LFWHRRDLRLKDNIGLFQAHQKTAKVLGVFCFDPQLLKKDQVAPARIKYLLGCLQELQEN 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+ GSDL+I I L + + AT VF +++E + R+ V L + +
Sbjct: 65 YRRVGSDLLILNADPVTAISNLAQTLNATGVFWNQDIEPYSRKRDRAVQSALEEQGIT 122
>gi|384045337|ref|YP_005493354.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
gi|345443028|gb|AEN88045.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
Length = 475
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ ++W ++D R+ D+ L A+K VVP+Y+ D S + + AL D + S+
Sbjct: 4 TIIVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDDEESSMGSASKWWLHHALNDFKTSI 63
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL----RQMMAIVDETLAKVSL 161
++ L+I+ G ++V+++L+ E A ++ E H +++ A E +
Sbjct: 64 EKIEGTLIIKKGNPKDVLQKLIHETNAQDIYWNRRYEPHALKRDKELQAFFSEQQINIRT 123
Query: 162 VDG 164
+G
Sbjct: 124 FEG 126
>gi|363582222|ref|ZP_09315032.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium
HQM9]
Length = 433
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLG-LVAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+ WF++DLR+ D+ G A S+ + V+P+++FD IL + ++ + + +L D+
Sbjct: 5 TIFWFRRDLRLHDNTGFFFALSENKNVLPIFIFDTEILGKLPENDARVSFIHDSLADMHS 64
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
LKE + I G + +E+ ++ K T V+ + E
Sbjct: 65 KLKEMNKGISIFHGEPIAIFQEIEKKYKVTKVYTNHDYE 103
>gi|167626681|ref|YP_001677181.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596682|gb|ABZ86680.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 499
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
V+WFK+DLR+ D+L L A+ V+P+Y+ + + + S+ + LE+L L
Sbjct: 3 VVWFKRDLRIYDNLALTQAATKGDVLPIYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++ G V +L+++ SV++ +E
Sbjct: 63 TRLGQPLILMIGDAVEVFEQLIQQYPINSVWSHQET 98
>gi|385792299|ref|YP_005825275.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676445|gb|AEB27315.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
Length = 499
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L A++ ++PLY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLAAEKGDILPLYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L I G + +L+++ +V++ +E
Sbjct: 63 TKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQET 98
>gi|254372340|ref|ZP_04987831.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570069|gb|EDN35723.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3549]
Length = 499
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L A++ ++PLY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLAAEKGDILPLYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L I G + +L+++ +V++ +E
Sbjct: 63 TKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQET 98
>gi|432488238|ref|ZP_19730125.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE213]
gi|432838255|ref|ZP_20071745.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE140]
gi|433202189|ref|ZP_20385990.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE95]
gi|431024074|gb|ELD37267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE213]
gi|431391513|gb|ELG75153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE140]
gi|431725521|gb|ELJ89370.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE95]
Length = 472
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA +Y + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F +++++ E + T +F + E + R A V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERTLRNV 124
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLR 102
+A++WF++DLR+ DH L AA ++P+Y+ + + + ++ L A+ L
Sbjct: 2 TAIVWFRRDLRLHDHAALHAAMLTGDPIIPVYIVEDSLCLSAAVGDKRLHAHFSAIAALD 61
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+L + G L+IR G + V+ +L +E A +F + R+ +V E L++
Sbjct: 62 DALVQLGGRLLIRRGEPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLSR 117
>gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
Length = 464
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDL 101
S ++W ++DLRV D L AA++ V+P+YV D Y + ++LE L
Sbjct: 2 SSPQIVWLRRDLRVADQPALHAAAQAGPVIPVYVLDDERAGDHAYGGASKVWLHYSLESL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-------EEEVEYHLRQMMAIVDE 154
KS + S +++R G V+ + +EV A + A +E E LR + E
Sbjct: 62 CKSFGNRRSQIVLRKGDAPQVLAGIADEVGAGCIHAIRHYEPWWKEAEDELRDAL----E 117
Query: 155 TLAKVSLVDG 164
K+ L DG
Sbjct: 118 EDRKLCLYDG 127
>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
Length = 433
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNE--MLELVIFALE 99
+ + W ++DLR++D++GL A + + V+PL++FD IL + + + + LE
Sbjct: 2 KDNYVLFWHRRDLRIEDNIGLYHALNSGKKVIPLFIFDSDILEKLPKDDARVTFIYEELE 61
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+ +L+ + ++++ G+ V+ E++ + + ++V+ + E
Sbjct: 62 KINTTLQSHDASILVKHGKPLEVLEEIIGKHEISAVYTNHDYE 104
>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
Length = 464
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLRV D+ L S+ V+P++VFD +LS + + ++ ALE LR+S +E
Sbjct: 3 VHWHRRDLRVADNRAL---SRGSPVLPVFVFDGAVLSHAAPPRVSFMLSALESLRESYRE 59
Query: 108 QGSDLMIRFG 117
+G DL++ G
Sbjct: 60 RGGDLLVLRG 69
>gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum
JL354]
Length = 467
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSL 105
++W ++DLR+ D+ L AA++ ++P++V D +Y + + +LE L +S
Sbjct: 6 IVWLRRDLRLADNPALYAAAQAGPIIPVFVLDDERTGDRKYGDASRWWLHHSLESLARSF 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK---VSLV 162
+ L++R G N++ +L + A+++ A E R+ + + L + + L
Sbjct: 66 GRHNASLILRRGDSVNILADLAAKTGASAIHANRHYEPWWRKAQGDLKKALPEGCDLELH 125
Query: 163 DG 164
DG
Sbjct: 126 DG 127
>gi|410693074|ref|YP_003623695.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
gi|294339498|emb|CAZ87857.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
Length = 493
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
A++WFK+DLRV DH L AA++ A + L+V + ++ + ++ + L++S
Sbjct: 5 ALVWFKRDLRVQDHAALHAAAQCDAALALFVMEPEWIASPECDAQHVQFAADCVSALQES 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L G L++R G V V ++ EV+ T +F+ EE
Sbjct: 65 LAGLGLRLLVRVGDVPQVFEDIRREVRFTHLFSHEET 101
>gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
Length = 465
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Query: 49 IWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRI--LSRYSNEMLELVIFALEDLRKSL 105
+WF++DLR+ DH L AA++ + V+P+++ D + L L L I A +D +L
Sbjct: 1 MWFRRDLRLTDHPALSAAAQTGRPVIPVFIRDDAVAGLGAAPKWRLGLGIGAFDD---AL 57
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+E+ S L++R G V+++L++E A +V+
Sbjct: 58 REKSSRLILRKGDALEVLQDLIKETGAGAVY 88
>gi|456063890|ref|YP_007502860.1| Deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455441187|gb|AGG34125.1| Deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 418
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 33/188 (17%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHR------ILSRYSNEMLELVIFA 97
G+ + WF+ DLR+ D+ A ++P+YV D + R + +
Sbjct: 2 GTLIYWFRNDLRLADNPAFTQACLNADYLLPVYVHDTKEQETVYGFERQGPHRKAFLRAS 61
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE-----EEVEYH--LRQMMA 150
L+DL+ L+ QGSDL+ G+ V+ L+++ A +++ E EE+E L++ A
Sbjct: 62 LDDLKTRLQAQGSDLLEFSGKSAEVLLRLLKDSAADAIYCEQIEAPEEIEQVRILQEQGA 121
Query: 151 IVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFR--------KLQRPLTSPI 202
VDE + S++D + PF +L +P FR K +P+ +P
Sbjct: 122 NVDEYW-QSSMLDPQ------HFPF----DLETMPDVFTAFRREVERAQLKFAQPINAPK 170
Query: 203 LPPTLAGA 210
P+L A
Sbjct: 171 KIPSLPAA 178
>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 474
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
+IWF+QDLR+ DH L AA + + V+P+++ D + + L + L L ++L+
Sbjct: 9 LIWFRQDLRLSDHPALSAAVRSGRPVIPVFIRDSLVDDLGAAPKWRLSL-GLAALAQNLE 67
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+GS L++R G + ++ L++E A V+
Sbjct: 68 HKGSKLVLRSGPALDALKALIDETGAREVY 97
>gi|307944813|ref|ZP_07660151.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4]
gi|307772027|gb|EFO31250.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4]
Length = 527
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 40 SKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFA 97
S R+ ++WFK+DLR DH L+ A++ V+PLYV + ++ + S + +
Sbjct: 5 SNMRAPVQIVWFKKDLRTYDHAPLLKAAQAGPVLPLYVIEPKLWMQPDMSGRHFAFLKES 64
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L DLR L+ G L+++ + +V+ +L ++++ EE
Sbjct: 65 LVDLRDDLQGLGVRLVLKVDDIIHVLTDLKSRHAIAALWSHEET 108
>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 425
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 44 SGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHRILSRYSN-------EMLELVI 95
S +IWF+ DLR D+ + SK ++P+Y FD R S+ S+ ++
Sbjct: 3 SKVTLIWFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
A+ +L++ G DLM G E +I L + + VF EV
Sbjct: 63 DAVRELKEKFAAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREV 108
>gi|448602354|ref|ZP_21656410.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445747869|gb|ELZ99323.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 507
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-------------ILSRYSNEMLE 92
+++ WF++DLR+ D+ L AA VVP+Y D R + +
Sbjct: 5 TSLAWFRRDLRLHDNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFVFEKTGAHRAR 64
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ AL DLR SL+++GSDL++R G E+V+ E+ V A V + + V
Sbjct: 65 FRLEALSDLRASLRDRGSDLLVREGTPESVLPEVATTVDADVVTVHTRPTPEESSVESAV 124
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
+ + DG W + + L+ LP ++ FRK
Sbjct: 125 ESAVETELRDDGVELRRFWGHTLTHVDDLPMALSALPDTYTTFRK 169
>gi|386845211|ref|YP_006263224.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
gi|359832715|gb|AEV81156.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
Length = 436
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
G+ V F +DLR+ D+ L S VVPL+V D R LS S + +L DLR S
Sbjct: 2 GARVALFTRDLRIHDNPLL---SGPDPVVPLFVLDPR-LSGLSANRSRFLHQSLADLRNS 57
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L+E+G+DL+IR G + EV A+++ +V
Sbjct: 58 LRERGADLVIREGDPVAETIAVASEVDASTITVAADV 94
>gi|315444996|ref|YP_004077875.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
Spyr1]
gi|315263299|gb|ADU00041.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
Spyr1]
Length = 446
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ D LVAA++ V+ YV D R+ + + L+ + AL DLR+SL
Sbjct: 1 MLWFRRDLRLADLPALVAAAEVDGDVLACYVLDPRLKATGGSRRLQYLYDALRDLRESLD 60
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV---- 162
+ L+I G + I L V A+SV E+ + V + L V LV
Sbjct: 61 GR---LLITRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGDVELVATGS 117
Query: 163 ------------DGKPKICLWQTPFYD 177
DG P TPF+D
Sbjct: 118 PYLVSPGRVTKGDGSPYKVF--TPFFD 142
>gi|208780423|ref|ZP_03247764.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
gi|208743791|gb|EDZ90094.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
Length = 499
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L A++ ++PLY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLAAEKGDILPLYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L I G + +L+++ +V++ +E
Sbjct: 63 TKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQET 98
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 125/303 (41%), Gaps = 54/303 (17%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+ GL AA + + VV ++ D ILS + + +I L+ L++
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQRD 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG 164
+ GS L+I +R+L + A +V+ ++VE RQ V+E+L +V +
Sbjct: 66 YQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEVGI--- 122
Query: 165 KPKI-CLWQTPFYDIKNL-----NDLPVSHNEFRK-LQRPLTSPI-------LPPTLAGA 210
K+ W + + + V +RK +Q+P P L A
Sbjct: 123 --KVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKA 180
Query: 211 KLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQ 270
LEA LPT +L F+ P+ LE ET +D+L
Sbjct: 181 ALEAGAIALPTAKDLG-FIWSEPFILE---------PGETAASDRLQLF----------- 219
Query: 271 HSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKL---RNAE 327
D++ + D+G L L LR+ +R WQ+ QE + R+ E
Sbjct: 220 ------CDRAIYEYDQGRNFPAIDGTSL--LSPALRFGAIGIRTLWQKTQEIMALTRSDE 271
Query: 328 SRD 330
+RD
Sbjct: 272 ARD 274
>gi|254373814|ref|ZP_04989297.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
gi|151571535|gb|EDN37189.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
Length = 499
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L A++ ++PLY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLAAERGDILPLYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L I G + +L+++ +V++ +E
Sbjct: 63 TKLGQSLTIMLGDAVEIFEQLIQKYPIKNVWSNQET 98
>gi|448424168|ref|ZP_21582294.1| deoxyribodipyrimidine photolyase [Halorubrum terrestre JCM 10247]
gi|445682833|gb|ELZ35246.1| deoxyribodipyrimidine photolyase [Halorubrum terrestre JCM 10247]
Length = 518
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA------VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
+ W ++DLRV D++GL AA+ P++VFD +L S+ + ++ L L
Sbjct: 3 LFWHRRDLRVADNVGLAAATGAGDDADRGPAAPVFVFDPDVLDHASDVRVRRLLDGLAAL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
R +E+GSDL++ G E+V+ L + + A V + R+ A V L V +
Sbjct: 63 RDDYRERGSDLLVARGDPESVLPRLADALDAERVVWNRDYSGLARERDAAVRRALDAVDV 122
Query: 162 V 162
Sbjct: 123 A 123
>gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 462
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++DLRV D+ GL A V L+VFD +L + + ++ AL LR + ++
Sbjct: 3 IHWHRRDLRVADNRGLADAPGRP--VGLFVFDEAVLDHAAPPRVAFLLDALSSLRAAYRD 60
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSV 135
+GS+L IR G NV+ L +++ V
Sbjct: 61 RGSELFIRRGDPANVLSALADDLGVDVV 88
>gi|407939960|ref|YP_006855601.1| DNA photolyase FAD-binding protein [Acidovorax sp. KKS102]
gi|407897754|gb|AFU46963.1| DNA photolyase FAD-binding protein [Acidovorax sp. KKS102]
Length = 523
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEM--LELVIFALEDLRKSL 105
V+WFK+DLRV DH L A+ V+ LYV + + ++ + V +L DL ++L
Sbjct: 5 VVWFKRDLRVHDHAPLHHAAAQGPVLCLYVIEPSLWAQPDAALQHYHFVQESLHDLAQAL 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ +G+ L + G V +V+ L ++ A EE
Sbjct: 65 QRRGATLQVAVGEVVDVLARLHALAPFHTLVAHEET 100
>gi|424812696|ref|ZP_18237936.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756918|gb|EGQ40501.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 458
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ + W +QDLR D++GL+ A++ + VP+YV D + V L+ L
Sbjct: 2 TTLFWHRQDLRTRDNIGLIQAAQNEDAVPVYVRDPSVHGNLGVNQKAFVEQGLQKLDDKY 61
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+E GS L++ G ++EL + A ++ + ++ + + V+E +
Sbjct: 62 RELGSGLVVSDGDTAEQLQELADSFDADNLLYNKAIDPRRKSVAKNVEEAFDDTEI 117
>gi|301020834|ref|ZP_07184898.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
gi|419917767|ref|ZP_14435992.1| deoxyribodipyrimidine photolyase [Escherichia coli KD2]
gi|300398480|gb|EFJ82018.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
gi|388393155|gb|EIL54545.1| deoxyribodipyrimidine photolyase [Escherichia coli KD2]
Length = 472
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA +Y + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLNRLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F +++++ E + T +F + E + R A V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERTLRNV 124
>gi|432601239|ref|ZP_19837489.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE66]
gi|431143355|gb|ELE45088.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE66]
Length = 472
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA +Y + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
Length = 481
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRY---SNEMLELVIFALE 99
S A++WF++DLR DH L A K + V +VFD IL ++ +E + ++
Sbjct: 4 SSYALVWFRRDLRDFDHAALYHALKAHTHVYCAFVFDTDILDALPDRADRRVEFIWESVR 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+++L+ QG DL++ + I L ++KA++V++ + E
Sbjct: 64 ELQQALRSQGGDLIMLHACAKEGIPALAVKLKASAVYSNRDYE 106
>gi|448633777|ref|ZP_21674276.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
gi|445750468|gb|EMA01906.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
Length = 465
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 24/212 (11%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR D+ GL AA+ VVP++VFD +L + + ++ AL+ LR+ +++
Sbjct: 5 WHRRDLRAADNAGLAAATPSDPVVPVFVFDRAVLDHAGSPRVAFMLDALDSLREWYRDRD 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
SDL+I G NV+ EL E A V ++ R+ A V + L + +
Sbjct: 65 SDLVIAEGDPTNVLPELAAEYGAEKVTWGKDYSGLARERDAAVRQALDDADVAREAVQNA 124
Query: 170 LWQTPFYDIKNLNDLPVS---------HN-EFRKLQRPLTSPIL-------PPTLAGAKL 212
+ P N D P S H+ E P ++ L PPTLA
Sbjct: 125 VLHEPGEITTNDGD-PYSVFTYFGRKWHDREKDTAYEPPSADELADVDGDAPPTLADLGF 183
Query: 213 EADWGPLPT--FDE----LKEFVNENPWKLEE 238
E +PT DE L +F++EN ++ EE
Sbjct: 184 EEPEADVPTAGTDEARALLDDFLDENVYEYEE 215
>gi|407710068|ref|YP_006793932.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
gi|407238751|gb|AFT88949.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
Length = 499
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL-------------SRYSNEML 91
+ ++WF++DLR D+ L A K+ + V ++VFD IL ++ + +
Sbjct: 13 TGLVWFRRDLRTTDNAALYYALKHCERVWCVFVFDTTILQPLVDRWQTRHPGTQAQDRRV 72
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
E ++ +L +L ++L+ QG L++ +G +++ +L ++++ +VF + E +
Sbjct: 73 EFILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHDYEPAAIERDEA 132
Query: 152 VDETLAKVS 160
V E LA+
Sbjct: 133 VRERLAETG 141
>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
CCGE1001]
Length = 499
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL-------------SRYSNEML 91
+ ++WF++DLR D+ L A K+ + V ++VFD IL ++ + +
Sbjct: 13 TGLVWFRRDLRTTDNAALYYALKHCERVWCVFVFDTTILQPLVDRWQTRHPGTQAQDRRV 72
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
E ++ +L +L ++L+ QG L++ +G +++ +L ++++ +VF + E +
Sbjct: 73 EFILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHDYEPAAIERDEA 132
Query: 152 VDETLAKVS 160
V E LA+
Sbjct: 133 VRERLAETG 141
>gi|432791917|ref|ZP_20026008.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE78]
gi|432797880|ref|ZP_20031906.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE79]
gi|431341765|gb|ELG28762.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE78]
gi|431345205|gb|ELG32131.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE79]
Length = 472
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA +Y + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLNRLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F +++++ E + T +F + E + R A V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERTLRNV 124
>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 530
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 5/170 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS--RYSNEMLELVIFALEDLRK 103
++ WF++ LR+ D+ L+AA K A + P+++ D + S +I +L+DL +
Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKNSAEIYPIFILDPWFPKNMQVSINRWRFLIESLKDLDE 64
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
SLK+ S L + GR V EL + K T + E + E + R+ +V V
Sbjct: 65 SLKKLNSRLFVVRGRPAEVFPELFTKWKVTRLAFEVDTEPYARRDAEVVRLAAEHGVQVI 124
Query: 164 GKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLE 213
K L+ T ++N P+++ + L L P P + KLE
Sbjct: 125 QKVSHTLYDTERIIVENSGKAPLTYTRLQTLVASLGPPKQP--VPAPKLE 172
>gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
Length = 473
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ DH L AA + ++P+++ D + + L + +L L + L+
Sbjct: 8 LVWFRRDLRLADHPALCAAIEGGGPIIPVFIHDDSVAGLGAAPKWRLGL-SLASLARDLE 66
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSV 135
++GS L++R G V+R LV E A +V
Sbjct: 67 DRGSRLILRRGSALEVLRALVAETGAGAV 95
>gi|449134940|ref|ZP_21770404.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448886419|gb|EMB16826.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 488
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS-------RYSNEMLELVIFAL 98
+A++WF+ DLR DH L+ AS ++ D R R +I L
Sbjct: 3 NALVWFRNDLRTIDHEPLLRASTADRCFAVHCIDPRQFETVELGFHRTGPFRARFLIECL 62
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
DLR L+ G +L++R GR E V+++L+ + SV
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQDLLPSLSIDSV 99
>gi|365960525|ref|YP_004942092.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
gi|365737206|gb|AEW86299.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
Length = 428
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 47 AVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+ W+++DLRV+D+ L A + Q+V+P+++FD IL++ ++ + + L+ + +
Sbjct: 2 TIFWYRRDLRVEDNAALYFALQENQSVLPIFIFDTTILNQLEKTDARVSFIHEQLQYINR 61
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
LK L I +G + EL+ + K +V+ + E R+ ++E L
Sbjct: 62 QLKAVNKSLAIFYGNPVEIFSELITKHKIENVYTNHDYEPAARKRDKAINELL 114
>gi|335042827|ref|ZP_08535854.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
gi|333789441|gb|EGL55323.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
Length = 500
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR+ DH L A+ ++P+Y+F+ + S+ S + L L ++L
Sbjct: 3 LVWFKRDLRIHDHAPLTLAAAQGPILPVYIFEPALWSQPDMSYRQFAFLKECLYQLNEAL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L+++ G +++ L ++ TS+++ +E
Sbjct: 63 SVLGCPLIVKVGDAVSILESLRQKYNVTSLWSYQET 98
>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
Length = 481
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+++WF++DLR DH L A K + VV +VFD IL + +E + ++ +L+
Sbjct: 4 SLVWFRRDLRDYDHAALYHALKDSEQVVCAFVFDTDILDGLPRDDRRVEFIWESVRELKL 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+E+G DL++R G+ I L + V+ + E
Sbjct: 64 ALQERGGDLLVRHGKATEEIPALASVLGVECVYCNRDYE 102
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 26/199 (13%)
Query: 45 GSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHRIL-SRYSNEMLELVIFA-LEDL 101
+A+ W ++DLR+ D+ A ++ +VP +V D R+L S Y+ E + +F+ L L
Sbjct: 2 ATAIWWIRRDLRLTDNQALTAALTRAAQIVPCFVLDPRLLNSSYAGERRKAFLFSGLRVL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK--- 158
L+ +G L++R G V+ L E A +V+AE + + R DE +A+
Sbjct: 62 DADLRRRGGRLIVRCGDPAAVLSRLAAESGACAVYAERDYSPYAR----CRDEAVARALP 117
Query: 159 --VSLVDG----KPKICLWQ--TPF-----YDIKNLNDLPVSHNEFRKLQRPLTSP---I 202
+ L DG +P L TP+ Y + + PV +E L P +
Sbjct: 118 IPLVLTDGLTIRRPDALLKDDGTPYTVFTPYSRRWRSYPPVGAHEILPAPARLAVPESIV 177
Query: 203 LPPTLAGAKLEADWGPLPT 221
P L+ D GP P+
Sbjct: 178 GEPIPKQPHLDDDTGPFPS 196
>gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 417
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDH--RILSRYSNEM------LELVIF 96
+ + WF DLRV D+ L AAS+ ++ +Y++ L+++S + L V
Sbjct: 4 TGLYWFTNDLRVADNPLLTEAASEVDQLICVYLYPQLTPFLAQFSGQQQLGAHRLRFVDQ 63
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
AL+DL SL +QG L + E + L+E+ T ++ + + M + +
Sbjct: 64 ALQDLNHSLAKQGQRLAVIHQTAEQTLPSLIEQYNVTHLYVNRCAGWDETKQMHTLKQQF 123
Query: 157 AKVSLVDGKPKICLW--QTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPP 205
+ +V Q PF L LP + FRK P+ + L P
Sbjct: 124 PYLKVVSLSVNSLFQESQLPF----TLAQLPATFTRFRKCMEPVNTRDLLP 170
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ ++W ++D R+ D+ L A+K VVP+Y+ D S + + AL D + S+
Sbjct: 4 TIIVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDYEESSMGSASKWWLHHALNDFKTSI 63
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL----RQMMAIVDETLAKVSL 161
K+ L+++ G ++V+++L+ E A ++ E H +++ A E +
Sbjct: 64 KKIEGTLIVQKGNPKDVLQKLLHETNAQDIYWNSRYEPHALKRDKELQAFFSEQQINIRT 123
Query: 162 VDG 164
+G
Sbjct: 124 FEG 126
>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 550
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 128/337 (37%), Gaps = 39/337 (11%)
Query: 37 AATSKGRSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRIL------SRYSNE 89
A + + + A+ WF+ LR D+ L+ A K ++++P+YV D R
Sbjct: 2 AKSEEKKHDVAIHWFRNGLRFHDNPCLLDACQKSESLLPIYVVDPEFPFAQTAGCRAGTI 61
Query: 90 MLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMM 149
++ ++ ++ + L++ GS L++ G+ V+ E+V +A ++F E+E +R+
Sbjct: 62 RANFLLESINEVDEKLRKMGSQLVVVLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQD 121
Query: 150 AIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAG 209
A + + DGK C ++ Y L+ + + + P T
Sbjct: 122 AETIQAIKNRLKRDGKNYECKFEA--YATHTLHPMERYLAQCKDHTAPSTY--------- 170
Query: 210 AKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLG-KRSKRNLN 268
+ + E+ E V E P +S L+ AE + L LG + ++
Sbjct: 171 GSFTKIFNKMSVAKEVNE-VKEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAADDMK 229
Query: 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAES 328
N G GG NA + L + R W EK + + +
Sbjct: 230 NS-------------GKGGYAFAGGENAAIELL------AKNMARSQWVATFEKPKTSPN 270
Query: 329 RDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
T P + G IS R ++E K + N+
Sbjct: 271 DATRPSTTALSPYVKHGCISPRRFYHELSKVYSKYNS 307
>gi|92429542|gb|ABD93515.2| DNA photolyase protein [Solanum arcanum]
Length = 145
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 75 LYVFDHRILSRYSNEM-------LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELV 127
+Y FD R + S+ +I ++ DLRK+L+ +GSDL++R G+ E V+ EL
Sbjct: 3 VYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELA 62
Query: 128 EEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LND 183
+ V A +V+A EV + + +D + +G W + Y + + L
Sbjct: 63 KAVGAEAVYAHREVSHDEVKGEDKIDAVMKD----EGLEVKYFWGSTLYHVDDLPFKLEQ 118
Query: 184 LPVSHNEFRK 193
+P ++ FR+
Sbjct: 119 MPTNYGGFRE 128
>gi|402771126|ref|YP_006590663.1| DNA photolyase [Methylocystis sp. SC2]
gi|401773146|emb|CCJ06012.1| DNA photolyase, FAD-binding [Methylocystis sp. SC2]
Length = 480
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLE--LVIFALED 100
+ A++WF+ DLR+ D+ L+AA++ A +V LY+ D + + +L
Sbjct: 2 NAPAIVWFRNDLRISDNPALLAAARTGAPLVALYILDDESPGEWRTGAAARWWLHHSLRA 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L +SL +G L++R GR V +++ E A +VF
Sbjct: 62 LSQSLAARGVSLILRRGRAPYVFEQIIAETGAGAVF 97
>gi|359785167|ref|ZP_09288322.1| deoxyribodipyrimidine photolyase [Halomonas sp. GFAJ-1]
gi|359297465|gb|EHK61698.1| deoxyribodipyrimidine photolyase [Halomonas sp. GFAJ-1]
Length = 483
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 129/329 (39%), Gaps = 76/329 (23%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS---------RYSNEMLELVIFAL 98
++W + +LRV D+ L S + ++ LYV D L R L + +L
Sbjct: 7 IVWLQDNLRVADNPLLQFDSPPEQLLCLYVLDQNWLQPCVAGEPTPRLGPARLRFLWQSL 66
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKA----TSVFAEEEVEYHLRQMMAIVDE 154
+LR L ++GSDL++R G V+ +L + A T+ + E H+ ++ +
Sbjct: 67 MELRGELLQRGSDLLVRIGDPAEVVVQLATSLNARQVRTAAHSGSEEVAHIAKVSQQLPA 126
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-LQRPLTSPILPPTLAGAKLE 213
++ +++ VD I PF LP + + FR+ +++ I PP A L
Sbjct: 127 SI-QLACVDSGYLISADTLPF----AAELLPANFSAFRRSVEKQCV--IAPPMHAPVTLP 179
Query: 214 ADWGPLP-TFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHS 272
+ W P F LK ++ ++W
Sbjct: 180 S-WPDAPRGFPPLKSVCQDS-----DAW-------------------------------Q 202
Query: 273 PRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGA 332
P R +G T GG A ++ L+ YL +G E +K RN GA
Sbjct: 203 PDDR---------QGFTFIGGEAAAVDRLKNYLWQQKGG------ESYKKTRNGLL--GA 245
Query: 333 SFATLFGPALCLGIISRRGVHYEAIKFEK 361
SF+T P L G +S R VH E +E+
Sbjct: 246 SFSTRLSPWLARGCLSARQVHQEVKAWEE 274
>gi|383827438|ref|ZP_09982538.1| deoxyribodipyrimidine photo-lyase [Mycobacterium xenopi RIVM700367]
gi|383330482|gb|EID09004.1| deoxyribodipyrimidine photo-lyase [Mycobacterium xenopi RIVM700367]
Length = 456
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 51 FKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKE 107
F +DLRV D+ L AA + AVVP++V D ILS + ++ AL DL L+
Sbjct: 8 FTRDLRVHDNPVLTAAHRGGDAVVPVFVLDEAILSSDYVTPNKAAFLVDALTDLDDELRR 67
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+G L++R G+ + + +V+E+ T V +V
Sbjct: 68 RGGRLIVRRGQFVDEVLRVVDELSITDVHIAADV 101
>gi|229578080|ref|YP_002836478.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
Length = 433
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL---SRYSNEM-LELVIFALEDLRKSL 105
F++DLR+DD+ GL+ A + V+P ++ D R + + Y +E + +I +L +L L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKAT 133
+++GS L + FG E I+ L+++V A
Sbjct: 67 RKRGSRLYVYFGLAEEEIKNLLKDVDAV 94
>gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
Length = 469
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVF--DHRILSRYSNEMLELVIFALEDL 101
G ++W +QDLR+ D L AA + AV+P+++ D + + +L+ L
Sbjct: 3 GPTLVWLRQDLRLADQPALHAAVERGGAVIPVFIHAPDEDLQWPPGAASNWWLHHSLQSL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
++L + GS L++R G + +RELV E AT+V+
Sbjct: 63 NEALNKAGSPLVVRAGPSLDTLRELVAETGATAVY 97
>gi|134100631|ref|YP_001106292.1| deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea NRRL
2338]
gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea NRRL
2338]
gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
erythraea NRRL 2338]
Length = 448
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL-SRY-SNEMLELVIFALEDLRK 103
+A+ F +DLRV D+ L AA++ VVPL+V D I SR+ S + +L DL +
Sbjct: 3 TAIALFTRDLRVHDNPMLAAAAEADRVVPLFVLDDDIQRSRFASPRRTRFLDESLTDLDE 62
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+L+ G L++R G + + + + EEV A V +V + + A + E L+
Sbjct: 63 NLRGLGGRLVLRRGALVDEVCRIAEEVDAAEVHICADVSGYAMRRQARLAEALS 116
>gi|356498450|ref|XP_003518065.1| PREDICTED: blue-light photoreceptor PHR2-like, partial [Glycine
max]
Length = 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM-------LELVIFA 97
+A+IWF DLR+ D+ L A + +V+P+Y FD + +++ +I +
Sbjct: 84 AALIWFCNDLRLLDNECLTATNNDSLSVLPIYFFDPSDYGKSASDFDKTGPYRAAFLIDS 143
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVE 128
+ DLR+SL+ + SDL++R + E V+ EL +
Sbjct: 144 VSDLRRSLQARNSDLIVRVKKPETVLVELAK 174
>gi|435847076|ref|YP_007309326.1| deoxyribodipyrimidine photolyase [Natronococcus occultus SP4]
gi|433673344|gb|AGB37536.1| deoxyribodipyrimidine photolyase [Natronococcus occultus SP4]
Length = 468
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W + DLR D+ GL A++ V+PLYV D +L S + ++ AL LR +++G
Sbjct: 5 WHRSDLRAVDNRGLARAARDDRVLPLYVLDPTVLEHASPVRVACLLEALGALRSWYRDRG 64
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV-----SLVDG 164
D+++ G V+ + + A V E+V ++ + V L V S+VDG
Sbjct: 65 GDVLVVRGDASEVLPAVATDRDAARVVWNEDVGGLAQRRDSAVRTALEDVGVDHESVVDG 124
>gi|297582490|ref|YP_003698270.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
gi|297140947|gb|ADH97704.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
Length = 512
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
V+W K+DLR+ DH L A++ V+PL+V++ + + S + V+ +L +L + L
Sbjct: 4 VVWLKRDLRIFDHRPLKEAAEQGEVLPLFVWEASVWAHGDLSVRHRDFVLQSLAELDRRL 63
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
++G+ L G V +V+ L ++ +FA EE
Sbjct: 64 DQRGARLYTAVGEVIDVLTRLEADLGPFQLFAHEE 98
>gi|435850828|ref|YP_007312414.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
gi|433661458|gb|AGB48884.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
Length = 452
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 51 FKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKSLKE 107
F++DLR+DD+ GL+ A V+P ++FD R+L +YS L+ ++ +++DL L
Sbjct: 9 FRRDLRIDDNTGLIEALHSSHTVLPCFIFDPRLLEDGKYSKNALQFMLGSIKDLEAQLNA 68
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
G L + G V +L+ E +V +
Sbjct: 69 LGGRLYLFSGLPHEVTAKLIGEENIDAVIVNHD 101
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 27/220 (12%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYS--NEMLELVIFALEDLRKS 104
++WF+QDLR+ D+ L AA + Q ++P+Y+ D ++ + +L L
Sbjct: 23 LLWFRQDLRLADNPALRAAVESGQPILPVYILDDETPGAWAIGGAARWWLHHSLTALSHD 82
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG 164
LK G+ L++R G VI LV E AT+V+ E R+ + TL + +
Sbjct: 83 LKALGAPLILRRGDSREVIDSLVREAGATAVYWNRCYEPFARKRDEAIKATLKQDGIEAR 142
Query: 165 KPKICLWQTPFYDIKNLNDLPVS-HNEF-------RKLQRPLTSPILPPTLAGAKLEA-- 214
L P + ++N + P ++ F K +PL + P TL A A
Sbjct: 143 SFNSALLHEP-WTVENKSGEPFRVYSAFWRACLAKGKPDKPLPA---PETLVAASAPASD 198
Query: 215 ---DWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETI 251
DW LPT + + E +WT N + E +
Sbjct: 199 SIGDWKLLPTKPNWAK-------RFESAWTPGENGAQERL 231
>gi|417302466|ref|ZP_12089566.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 488
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 26/200 (13%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFA 97
+A++W++ DLR DH + AS ++ D R R +I +
Sbjct: 2 ANALVWYRNDLRTIDHEPFLRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIES 61
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH----LRQMMAIVD 153
L DLR L+ G +L++R GR E V++ L+ + +V E + + D
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAESVQQLCD 121
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-------LQRPLTSPILPPT 206
+ + G I + PF + D P +FRK + PL PI
Sbjct: 122 QHGIATHVAYGDTLIHPDELPF----EIADTPGLFTDFRKEIEKQCEARSPLEEPI---R 174
Query: 207 LAGA-KLEADWGPLPTFDEL 225
+ GA E + G +PT + L
Sbjct: 175 IQGALPEEVNAGDIPTLESL 194
>gi|433419586|ref|ZP_20405291.1| DASH family cryptochrome, partial [Haloferax sp. BAB2207]
gi|432199407|gb|ELK55585.1| DASH family cryptochrome, partial [Haloferax sp. BAB2207]
Length = 202
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 25/167 (14%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-------------ILSRYSNEMLE 92
+++ WF++DLR+ D+ L AA VVP+Y D R +
Sbjct: 5 TSLAWFRRDLRLHDNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ +L DLR SL+++GSDL++R GR E+V+ E+ V A + V H R
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPEVAATVDA------DFVTVHTRPTPEES 118
Query: 153 D-ETLAKVSLVDGKPKI-CLWQTPFYDIKN----LNDLPVSHNEFRK 193
E+ + L DG ++ W + + L+DLP ++ FRK
Sbjct: 119 RVESAVETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRK 165
>gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37]
gi|119863877|gb|ABM03354.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Psychromonas ingrahamii 37]
Length = 448
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL--SRYSNEML-----ELVIFALE 99
+ W +DLR++D+ L ASK ++ +YV D + + + ++ L + + LE
Sbjct: 4 TLYWVNKDLRINDNAALNLASKSDRLLCVYVVDKQSFEANNFQSKPLGDIRWQFLQGCLE 63
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
D +SL + G + I +G + + L E + T V + + +++ ++E L ++
Sbjct: 64 DFNESLSKLGQAMHIVYGDTLSTLMRLCESYQITDVITTKLPGTYENRLITQLNERLPEL 123
Query: 160 SL--VDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWG 217
++ VD PF L++LP+S+++FRK + P T+ D
Sbjct: 124 TIDQVDQFTLFTKKSLPF----ELDELPISYSKFRKKMAEVIIPEPVSTVQSLPSMFDTL 179
Query: 218 PLPT 221
P PT
Sbjct: 180 PAPT 183
>gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
Length = 473
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+++W ++DLR+ DH L AA + AV+P+++ D + + + L + +L L + L
Sbjct: 7 SIVWLRRDLRLADHPALCAALAGGGAVIPVFIHDESVEALGAAPKWRLGL-SLASLARDL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSV 135
GS L++R G +V+R LV E A +V
Sbjct: 66 AACGSRLILRRGAALDVLRALVAETGAGAV 95
>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
Length = 425
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 44 SGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFDHRILSRYSN-------EMLELVI 95
S +IWF+ DLR D+ + SK ++P+Y FD R S+ S+ ++
Sbjct: 3 SKVTLIWFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
A+ +L++ G DLM G E +I L + + VF EV
Sbjct: 63 DAVRELKEKFVAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREV 108
>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
Length = 483
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 51/252 (20%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLEL-------VIFALED 100
++WF+ DLR+ DH L AA++ A V L V+ +L S+E+ L + +L
Sbjct: 11 IVWFRDDLRLADHPALHAAAQSGAPV-LCVY---VLDEVSDEVRALGGAARWWLAQSLRS 66
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV-FAEEEVEYH---------LRQMMA 150
L L+ G+ L++R G V+ EL ++ A +V + E E+ H M
Sbjct: 67 LEAELRAAGALLILRRGPAAAVLAELAQQSDAAAVHWNEIEIAPHRAVADALADALTMAG 126
Query: 151 IV-----DETLAKVSLV---DGKPKICLWQTPFY-DIKNLNDLPVSHNEFRKLQRPLTSP 201
I +TL S + DG+ TPF+ + +L D P + L RP
Sbjct: 127 IAYHRHSGDTLVAPSAIRSKDGRGMRVF--TPFWRRVLSLGDPP------QPLPRPAA-- 176
Query: 202 ILP-PTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKL- 259
+ P P L GA+L +DW PT + + W+ E+ +A+T L D L++L
Sbjct: 177 LRPAPALPGAQL-SDWQLEPTAPDWAGGLRAT-WRPGEA-------AAKTRLADFLARLP 227
Query: 260 GKRSKRNLNNQH 271
G R+ ++H
Sbjct: 228 GYAEGRDYPDRH 239
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA + + VV ++ D IL R + + +I +L++L++
Sbjct: 6 LFWHRRDLRIADNIGLAAARQQSSKVVGVFCLDPNILERDDVAPARVTYMIGSLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVD 153
+ GS L+I G I L E + A +VF +VE Y + AI+D
Sbjct: 66 YVQAGSQLLILHGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILD 115
>gi|289773486|ref|ZP_06532864.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
gi|289703685|gb|EFD71114.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
Length = 458
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLR 102
++V+ F +DLR+ DH L AA + AVVPL+V D + + + L L+ L DL
Sbjct: 3 TSVVLFTRDLRLHDHPPLRAALDRSDAVVPLFVRDRAVGAAGFAAPNRLALLADCLRDLD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
L+++G L++R G +LVEEV A + AE + E HL
Sbjct: 63 SGLRDRGGRLVVRSG-------DLVEEVCAVAGEAEAD-EVHL 97
>gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
Length = 441
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 41 KGRSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRIL--SRY-----SNEMLE 92
+ + + ++WF DLR+ D+L L+ AA + Q +V +V D +RY S
Sbjct: 2 EAKHQTGLVWFNLDLRLIDNLTLIRAAEQCQQLVCCFVIDESWFKGNRYGLNGISQPRWR 61
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ A+ DL SL++ G L+IR G+ I L+ ++ +V+ ++ + R+ +
Sbjct: 62 YIQQAIADLAASLQQHGQQLIIRKGQPTTEISTLISTLEVDAVYCSDDPGVYERRRWDTL 121
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKL 212
+ ++ L + D L +LP +++ FRK PL P A ++L
Sbjct: 122 VKRFPYITFERVSNHTLLTEREL-DFP-LEELPATYSAFRKRFEPLAE-TFPSGQALSQL 178
Query: 213 EADWGPLP 220
+A P+P
Sbjct: 179 KA-LPPMP 185
>gi|418468382|ref|ZP_13039187.1| deoxyribodipyrimidine photolyase [Streptomyces coelicoflavus
ZG0656]
gi|371551012|gb|EHN78355.1| deoxyribodipyrimidine photolyase [Streptomyces coelicoflavus
ZG0656]
Length = 458
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLR 102
++V+ F +DLR+ DH L AA + AVVPL+V D + + + L L+ L DL
Sbjct: 3 TSVVLFTRDLRLHDHPPLRAALDRSAAVVPLFVRDRAVDAAGFAAPNRLALLADCLRDLD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
L+++G L++R G + + +V E +A V +V H
Sbjct: 63 AGLRDRGGRLVVRSGDLVGQVCAVVGEAEADEVHVAADVSAH 104
>gi|385653609|ref|ZP_10048162.1| deoxyribodipyrimidine photo-lyase [Leucobacter chromiiresistens JG
31]
Length = 465
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 13/99 (13%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLELVIFA------- 97
+A+IWF+ DLR+ DH L A ++ + VV LYV D S+E L A
Sbjct: 18 TALIWFRDDLRLADHAALSAGARDEGGVVALYVLDEE-----SDETRPLGGAAKWWLHES 72
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L L ++L E+G L++R G E+V+ + EV A V+
Sbjct: 73 LTRLGEALHERGVPLVLRRGAAESVVPAVAAEVGADHVY 111
>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
Length = 520
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 68/331 (20%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFD--------HRILSRYSNEMLELVIFA 97
A+ F+ DLR D+ + A K V+PLY FD H + + ++ +
Sbjct: 12 AICLFRNDLRYHDNEVIALAHKSADFVLPLYCFDPRHFEGTHHYKFPKTGIFRTQFLLES 71
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+ED R++L ++GS+LMI + E + ++ + + V + E + + V++ L
Sbjct: 72 VEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTGLKVTLILQTE--VTKEETDVEKRLQ 129
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK-LQRPLTSPILPPTLAGAKL 212
K+ I W + Y +L N +P S+ FRK ++ L I P K+
Sbjct: 130 KICQEIKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLR--IRPEISMPDKM 187
Query: 213 EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHS 272
+ P+PT F +E PW N+ L N
Sbjct: 188 K----PVPT------FAHEIPW---------GNLPTIEAL----------------NSTK 212
Query: 273 PRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGA 332
P +F GG A L L++YL + ++E + L G+
Sbjct: 213 PIPNSSSAF-------PFNGGETAALLRLKSYL--WDTNAVAQYKETRNGL------IGS 257
Query: 333 SFATLFGPALCLGIISRRGVHYEAIKFEKER 363
++T F L G +S R +H+E K+E +R
Sbjct: 258 DYSTKFSSWLSHGCLSPRRIHWELEKYELQR 288
>gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102]
Length = 702
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/421 (21%), Positives = 161/421 (38%), Gaps = 93/421 (22%)
Query: 43 RSGSAVIWFKQDLRVDD-----HLGLVAASKYQAVVPLYVFDHRILS------------- 84
RS V ++DLRV D HL + + ++P+YVF + +
Sbjct: 3 RSKLLVYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFSAQQVELSGFLKDGEQSPY 62
Query: 85 -----------RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVK-- 131
R + A+ +L++SL+E GS L+IR G V++V+ LV+E+K
Sbjct: 63 PPAKSQVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVVDHLVKELKDA 122
Query: 132 ---ATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN------ 182
+SV+ EE + Q + ++ + + LW+ Y + + +
Sbjct: 123 VPCVSSVWMTEEPSWEEVQEQESISSLCSQQGI-----EFELWKDEKYFVDDRDTGLESP 177
Query: 183 -DLPVSHNEFRKLQRPLTSP---ILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEE 238
DLP +RK Q PL +LP + LP F E EE
Sbjct: 178 ADLPDVFTTYRKSQEPLREKPRKVLPRPAKSS--------LPAFPE------------EE 217
Query: 239 SWTLINNMSAETILTDKLSKLGKRSKRNLNN-QHSPRKRLDKSFFVTDKGNTVGGGTNAV 297
S I + + L L KR + L + +P KR + + TD GG T+
Sbjct: 218 S---IPAQAHPFVSPVSLEDLQKRLVKPLEHIMDNPPKRPEDA---TDGHPFTGGETSGW 271
Query: 298 LNALQAYLRYL-EGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEA 356
A LR+L + + +++ + L G ++ L LG ++ R +H E
Sbjct: 272 -----ARLRHLGKSSAMTSYKDTRNGLV------GVDYSLKLSAYLSLGCLTARQIHEEL 320
Query: 357 IKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGY 416
+K E + + GY + W M L + + + +++R +G+
Sbjct: 321 LKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAK-----FGRKLFRLSGF 375
Query: 417 Q 417
+
Sbjct: 376 R 376
>gi|366158602|ref|ZP_09458464.1| deoxyribodipyrimidine photolyase [Escherichia sp. TW09308]
Length = 472
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S E + L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNPSARVLALYIATPRQWATHNMSPRQAEFINAQLNTLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
L E+G L+ F +++++ EE + T +F + E + R A+V++TL V
Sbjct: 65 MLAEKGIPLLFHEVDDFAASVEMVKQVCEENRVTHLFYNYQYEVNERARDALVEKTLHNV 124
>gi|448592357|ref|ZP_21651464.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731362|gb|ELZ82946.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 480
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 50 WFKQDLRVDDHLGLV--AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
W ++DLR D+ GL AA V PL+VFD +L + ++ AL +LR S +
Sbjct: 5 WHRRDLRTADNRGLATAAAEDEDVVAPLFVFDDAVLEHAGAPRVRYMLDALAELRASYRG 64
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSV 135
+GSDL++ G +++ + E + + V
Sbjct: 65 RGSDLLVARGDPRSLVPAVAEALGSERV 92
>gi|338996753|ref|ZP_08635463.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
gi|338766394|gb|EGP21316.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
Length = 473
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS---------RYSNEMLELV 94
S + ++W + +LR+ D+ L + + ++ LYV D R R L +
Sbjct: 3 STTDIVWLQDNLRIADNPLLHFDAPPEQLLCLYVLDQRWFEPSSAGDDTPRLGPARLRFL 62
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
+L +LR L ++GSDL++R G +++ E + + A V Y Q +A V E
Sbjct: 63 WQSLMELRGELLQRGSDLLVRIGDPASIVLETADMLSAREVRVAAHSGYEESQHIARVAE 122
Query: 155 TLAKVS---LVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK-------LQRPLTSPI-L 203
L D I PF L++LP + + FR+ P +PI L
Sbjct: 123 QLPPACQFFCADSGYLIAADDLPF----ALSELPPNFSAFRRRVEKHCEFLAPQPAPITL 178
Query: 204 PP 205
PP
Sbjct: 179 PP 180
>gi|432371439|ref|ZP_19614495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
gi|430899652|gb|ELC21746.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
Length = 472
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S E + L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNPSARVLALYIATPRQWATHNMSPRQAEFINAQLNTLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
L E+G L+ F +++++ EE + T +F + E + R A+V++TL V
Sbjct: 65 MLAEKGIPLLFHEVDDFAASVEMVKQVCEENRVTHLFYNYQYEVNERARDALVEKTLHNV 124
>gi|221134514|ref|ZP_03560819.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
Length = 501
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALE 99
R ++WFK+DLR+ DH L + ++ LY+F+ ++ YS V+ +L
Sbjct: 2 RPALDIVWFKRDLRLRDHAPLCRVMHNPRPILLLYIFEPDLIHDPHYSERHWRFVVQSLV 61
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
DL+ L E + +++ G V+ V L+ + +V++ EE+
Sbjct: 62 DLQAQLSEFQTQVLVLQGAVQTVFDTLLSQCDIGNVYSHEEI 103
>gi|339503748|ref|YP_004691168.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
gi|338757741|gb|AEI94205.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
Length = 472
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ DH L AA K V+P+++ D ++ + + L + ++ L ++L+
Sbjct: 7 LVWFRRDLRLSDHPALNAAVKSGNPVIPVFIHDDQVETLGAAPKWRLGL-GIDHLSETLE 65
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
S L++R G +R LV+E A +VF
Sbjct: 66 GLNSRLILRRGPALETLRTLVQETGAGAVF 95
>gi|410665733|ref|YP_006918104.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
gi|409028090|gb|AFV00375.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
Length = 433
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 14/173 (8%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFALEDLR 102
WF DLR+ D+ L A+ ++ LYV D R L + ++ +L DL
Sbjct: 8 WFINDLRLADNPALCRAAMADRLICLYVIDPRWFRPGRQQLPSMGEKRRTFLLQSLADLD 67
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+ L+ G L++ G E++I ELV + + E + + +A +D + +V
Sbjct: 68 RRLRALGQQLLVLEGHPESLIPELVRRYRVNRLTVNEVCTVNEYRTLASIDNACHAL-VV 126
Query: 163 DGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPL-TSPIL--PPTLAGAKL 212
D L + + + + P+ ++FRK PL PI+ PP+L L
Sbjct: 127 DTFAGNQLLSSRY---RGHREFPLGFSQFRKQVEPLECRPIMAAPPSLPATPL 176
>gi|359395694|ref|ZP_09188746.1| hypothetical protein KUC_2354 [Halomonas boliviensis LC1]
gi|357969959|gb|EHJ92406.1| hypothetical protein KUC_2354 [Halomonas boliviensis LC1]
Length = 481
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 36/204 (17%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS---------RYSNEMLELVIFAL 98
++W + DLR+ D+ L S ++ LYV D + S R L + +L
Sbjct: 7 IVWLQDDLRIADNPLLHFVSSPCYLLCLYVVDEQWFSPLFDGESTPRIGPARLRFLWQSL 66
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+LR L +GSDL++R G+ +V+ EL + A V + + V++ L
Sbjct: 67 MELRGELLRRGSDLLVRIGKPSDVVIELASTLNARQVRVADHAGVEESAHIQAVEQGLPS 126
Query: 159 VSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK---------LQR--PLTSPI- 202
+ D CL D + L LP S + FR+ + R P+T P
Sbjct: 127 HTAFD-----CLESGRLIDRQALPFEREALPASFSAFRRRVEGVCTVPVSRCAPVTLPPW 181
Query: 203 ------LPPTLAGAKLEADWGPLP 220
PP A + A+W P P
Sbjct: 182 PEAPRGFPPLKAVCEQSANWQPDP 205
>gi|350532632|ref|ZP_08911573.1| deoxyribodipyrimidine photolyase [Vibrio rotiferianus DAT722]
Length = 493
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DHL L A S V LY+F+ +L YS V +L+D+
Sbjct: 6 LVWLKRDLRLTDHLPLQHALSSENPTVLLYIFEPMLLDDPHYSERHWRFVWQSLQDMDAQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + + + FG + + + ++ +VF+ +E+
Sbjct: 66 LAQHDQKISVMFGNARDCLSAIQKQFNINAVFSHQEI 102
>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 610
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 21/118 (17%)
Query: 32 VSPTAAATSKGRSGSAVIWFKQ-DLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR---- 85
VS ATS+ S + WF+ DLR+ D+ L+ +SK ++ VP++ FD +
Sbjct: 37 VSTVTKATSRASSQVVLHWFRHGDLRLLDNPALIHSSKTAESCVPVFCFDDSVYGNDNRT 96
Query: 86 ------YSNEMLEL---------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVE 128
+SN+ +L V+ +++DLR+SL+ +GS L + G+ V + LV+
Sbjct: 97 PDTRAPHSNDRGQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVD 154
>gi|21219363|ref|NP_625142.1| deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)]
gi|5459246|emb|CAB48919.1| putative deoxyribodipyrimidine photolyase [Streptomyces coelicolor
A3(2)]
Length = 458
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLR 102
++V+ F +DLR+ DH L AA + AVVPL+V D + + + L L+ L DL
Sbjct: 3 TSVVLFTRDLRLHDHPPLRAALDRSDAVVPLFVRDRAVDAAGFAAPNRLALLADCLRDLD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
L+++G L++R G +LVEEV A + AE + E HL
Sbjct: 63 SGLRDRGGRLVVRSG-------DLVEEVCAVAGEAEAD-EVHL 97
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++WF++ LRV D+ LV A + AV P++V D + R L ++ +L DL S
Sbjct: 7 ILWFRKGLRVHDNPALVKACEGASAVQPVFVLDPWFIKPERVGANRLRFLLESLTDLDAS 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
L+ +GS L++ G VI +E + + E + E + ++ A V+E
Sbjct: 67 LRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPYAQKRDASVNEA 117
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 29/215 (13%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL--SRYSNEML 91
TA + S G + S +IWF++ LRV D+ L A ++ ++ P++V D SR +
Sbjct: 2 TAPSVSNGTTRS-LIWFRKALRVHDNPALAAGIARAKSAQPVFVLDPWFCKPSRVGANRM 60
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
++ +L DL +L+E+GS L++ G V+ + K V E ++E + +
Sbjct: 61 RFLLQSLRDLDATLRERGSSLLVLHGEPRVVLPRACKTWKVDLVTWEHDIEPYAKMRDTA 120
Query: 152 VDETLAKVSLVDGKPKICLWQTPFYDIKNL-----NDLPVSHNEFRKLQRPLTSP----- 201
V L + + YD++ + P ++++F K+ + +P
Sbjct: 121 VRGALERAGVECASSS----GHTLYDVEEMLAKCHGKPPTTYSQFLKIVDKMGAPAAALD 176
Query: 202 ---ILPPTLAGAKLE--------ADWGPLPTFDEL 225
+P G E AD +PT +EL
Sbjct: 177 APKAMPAPFTGTAEETKELVAGVADAYGIPTLEEL 211
>gi|338974956|ref|ZP_08630311.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231555|gb|EGP06690.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 488
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLEL-------VIFALE 99
++WF+ DLR+ DH L AA++ A +V LYV D + S L + +L
Sbjct: 10 IVWFRDDLRLSDHPALHAAAETDAPLVLLYVLDEQSTSLRPPRGRPLGGASRWWLAQSLR 69
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L+ SL +G L++R G VI +L ++++A SV
Sbjct: 70 SLQASLAARGQTLVLRKGAAARVISDLAQDIEAASV 105
>gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
Length = 475
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLR 102
S ++W ++DLR+ DH L A + + V+P+++ DH + S + L L
Sbjct: 6 SSPIIVWIRRDLRLTDHAALHEAGRSGRPVIPVFIRDHGVDSLGAAPKWRLGQ-GLGHFA 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
K L ++GS L++R G V+ L++E A +V+ + + AI +T K +L
Sbjct: 65 KLLGDKGSRLVLRAGPAREVLEALIDETAAGAVWWQRAYD-----PAAIERDTAVKAALK 119
Query: 163 D 163
D
Sbjct: 120 D 120
>gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2255]
gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2255]
Length = 519
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVF--DHRILSRYSNEMLELVIFALEDLRKS 104
++WFK+DLR +DH L+ AS+ ++P+YV D+ S + + L DL
Sbjct: 10 IVWFKRDLRTNDHAPLLNASQQNTPILPIYVVEPDYWKTESSSRKHWHFIYDCLVDLNNE 69
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + G L+++ G V ++ ++ E ++++ EE
Sbjct: 70 LNDLGQPLIVQTGDVVDIFIQISEIFDIKNIYSHEET 106
>gi|448345411|ref|ZP_21534308.1| deoxyribodipyrimidine photolyase [Natrinema altunense JCM 12890]
gi|445635409|gb|ELY88579.1| deoxyribodipyrimidine photolyase [Natrinema altunense JCM 12890]
Length = 469
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
V W ++DLR D+ GL AAS + VVPL+V D +L S + ++ ALE LR
Sbjct: 3 VHWHRRDLRPGDNRGLARAASADEPVVPLFVLDPSVLEHASPVRVACLLEALESLRSWYD 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ-----MMAIVDETLAKVSL 161
GSDL++ + + A +V E+ R+ A+ DE + S+
Sbjct: 63 AHGSDLLVVRDEASAAVPRVATAHDAATVVWNEDYSGLARERDQAVRAALADEGITAESV 122
Query: 162 VDG 164
D
Sbjct: 123 HDA 125
>gi|227538334|ref|ZP_03968383.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241849|gb|EEI91864.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
spiritivorum ATCC 33300]
Length = 437
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIF---ALEDL 101
+++ WF++DLR++D+ L A S AV P+++FD IL+R + V F L+ L
Sbjct: 6 TSIFWFRRDLRLEDNHALFRALSSEAAVQPVFIFDSTILTRLDDPADARVTFIYQQLQLL 65
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ LK GS + +G V E+ EE K +V+ + E
Sbjct: 66 QEQLKPYGSSIKTYYGDPATVWEEIYEEYKPAAVYVNSDYE 106
>gi|448467406|ref|ZP_21599418.1| DNA photolyase FAD-binding protein [Halorubrum kocurii JCM 14978]
gi|445812282|gb|EMA62276.1| DNA photolyase FAD-binding protein [Halorubrum kocurii JCM 14978]
Length = 461
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++D R D+ GL AA++ V+P++V+D + V+ ++ L+ +E
Sbjct: 3 VFWHRRDPRTRDNAGLAAAARAGTVLPVFVYDDDLFETTGARQRAFVLRHVKRLKARYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139
GSDL++R G E+V+ EL +E A + F E
Sbjct: 63 LGSDLVVRVGDPESVLVELADEHDADAAFYNE 94
>gi|429851356|gb|ELA26551.1| cryptochrome dash [Colletotrichum gloeosporioides Nara gc5]
Length = 690
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 145/406 (35%), Gaps = 90/406 (22%)
Query: 48 VIWFKQDLRVDD-----HLGLVAASKYQAVVPLYVFD-HRI----------LSRYSNEML 91
+ + DLR+ D HL + + V+P+Y+F H+I S+Y
Sbjct: 8 IYLLRHDLRIADNPILHHLATSSDHGFTHVLPVYIFPAHQIEISGFLRDGSKSKYPEARS 67
Query: 92 ELVIF-------------ALEDLRKSLKEQGSDLMIRFGRVENVIRELVE-------EVK 131
E+ F ++ +L++SL+ GSDL +R G +V+ EL+ +V
Sbjct: 68 EIGKFWRCGPHRTKFIAQSVWNLKESLEGVGSDLCLRAGMFGDVVDELLRGFSDSKYKVG 127
Query: 132 ATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYD-----IKNLNDLPV 186
A + AEE VE +M + V+ K L + F D +KN DL
Sbjct: 128 AVWMTAEEAVEEKKDEMAVAAACSKHGVNF-----KTWLDEKYFIDDRDLGLKNPEDLDN 182
Query: 187 SHNEFRKLQRPL---TSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLI 243
FRK Q PL P LP A LPT E +++ KLE + L+
Sbjct: 183 VFTAFRKTQEPLREKPKPTLPQPKKSAIKPYPKDLLPTQSSPYEVPSDDYSKLESA--LL 240
Query: 244 NNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLD---KSFFVTDKGNTVGGGTNAVLNA 300
+++ K+ K + R RL KS +T+ NT N +L
Sbjct: 241 KPLTSPFTDDPKIPDKAKSVHPFHGGESEARSRLHHLVKSGAMTEYKNT----RNGLL-- 294
Query: 301 LQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFE 360
G F+T L LG ++ R +H ++FE
Sbjct: 295 ------------------------------GVDFSTKLSAFLSLGCLTSRQIHEALVQFE 324
Query: 361 KERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVY 406
N F GY + W M L + + E ++
Sbjct: 325 DGTNEDFKETSGYGKGENDGTKAVRFELLWRDYMRLCTRKFQEKLF 370
>gi|405958349|gb|EKC24485.1| Eukaryotic translation initiation factor 2-alpha kinase 4
[Crassostrea gigas]
Length = 1998
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 139/340 (40%), Gaps = 76/340 (22%)
Query: 42 GRSGSAVI-WFKQDLRVDDHLGLVAASK-YQAVVPLYVFD--------HRILSRYSNEML 91
G G +I F+ DLR+ D+ L A++ V+P+Y+FD H +
Sbjct: 2 GTKGKTIICLFRNDLRIHDNEVLQWANRNADFVLPMYIFDPRHFGGTYHFGFPKTGPHRT 61
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH--LRQMM 149
+ ++ +++DLRK+LK +GS L +R G+ ++++++ + +SV + V +H + Q
Sbjct: 62 KFLLESIQDLRKNLKIRGSGLAVRKGKPHEELKKMIDMLGQSSVHS---VVFHEEVTQEE 118
Query: 150 AIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPP 205
V++++ K V+ K W Y ++L + P + +FRK P
Sbjct: 119 LDVEKSIKKHCGVNIK---TFWGHTLYHREDLPFSPSQTPDVYTQFRKRVESQA-----P 170
Query: 206 TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKR 265
+ + PLP E E ++ E +TD
Sbjct: 171 VRKCLDMPKSFRPLPEGVEEGEIPTN------------KDLGVEDPVTD----------- 207
Query: 266 NLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRN 325
PR +D F+ GG + ++ L YL E ++E + L
Sbjct: 208 -------PRSVVD---FL--------GGESVAIDRLHHYL--WETDAIATYKETRNGLL- 246
Query: 326 AESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
GA ++T F L LG +S R + +E ++E ER +
Sbjct: 247 -----GADYSTKFSVWLALGSLSPRHIFWEVKRYENERTS 281
>gi|385206442|ref|ZP_10033312.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
gi|385186333|gb|EIF35607.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
Length = 499
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL-------------SRYSNEML 91
+ ++W ++DLR D+ L A K+ + V ++VFD IL ++ + +
Sbjct: 13 TGLVWLRRDLRNTDNAALYYALKHCERVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRI 72
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
E ++ AL +L ++L+ G L++ +G +++ L +E+ A +VFA + E +
Sbjct: 73 EFILAALGELDEALRTDGGGLIVLYGNPADLVPTLADELGADAVFANHDYEPVAIERDET 132
Query: 152 VDETLAKVS 160
V E LA+
Sbjct: 133 VREQLAEAG 141
>gi|88706143|ref|ZP_01103850.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
gi|88699537|gb|EAQ96649.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
Length = 488
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLR 102
+AV+W K+DLR+ DH L AA VV LY F+ +L Y V +L D+
Sbjct: 2 NAVVWLKRDLRLQDHAALEAALGSGLPVVLLYCFEPELLKDPHYDERHWRFVWESLRDMH 61
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ L+ L + G + R L +E + SV++ EE
Sbjct: 62 RRLEAHPRSLRVLHGDPREIFRVLADEEQLHSVYSYEET 100
>gi|330825550|ref|YP_004388853.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
K601]
gi|329310922|gb|AEB85337.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
K601]
Length = 516
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEM--LELVIFALEDLRKSL 105
V+WFK+DLRV DH LV A+ + V+ LYV + + ++ + + + + +L DL + L
Sbjct: 5 VVWFKRDLRVHDHAPLVHAAAHGPVLCLYVVEPSLWAQPDSALQHYQFLRESLRDLAQQL 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G+ L + G V V+ L + + EE
Sbjct: 65 RSCGARLQLALGEVPEVLARLHALQPFARLVSHEET 100
>gi|345003555|ref|YP_004806409.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SirexAA-E]
gi|344319181|gb|AEN13869.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. SirexAA-E]
Length = 459
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL-SRYSNEMLELVIF-ALEDLRK 103
AV+ F DLR+ DH L AA + VVPL+V D + + + E + L DL
Sbjct: 4 AVVLFTSDLRLHDHPPLHAALASADEVVPLFVRDDAVARAGFCAPNREAFLADCLRDLDA 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L+++G L+IR G + + +R +V E A V +V H ++ + E LA
Sbjct: 64 GLRDRGGRLVIRSGEIVDEVRRVVTETGAGEVHLAADVSGHAQRREERLREALASAG 120
>gi|92429540|gb|ABD93514.2| DNA photolyase protein [Solanum pimpinellifolium]
Length = 150
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+I ++ DLRK+L+ +GSDL++R G+ E V+ EL + V A +V+A EV + + +
Sbjct: 22 FLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKI 81
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
D + +G W + Y + + L +P ++ FR+
Sbjct: 82 DAVMKD----EGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFRE 122
>gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
Length = 431
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
+ WF++DLR++D+ GL A + V+PL++FD IL ++ + + +L+ +
Sbjct: 7 SFFWFRRDLRLEDNTGLFHALQSDLPVIPLFIFDEDILDNLPKNDARVSFIYDSLQKINN 66
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L S ++I+ G+ V + L+ E +VF ++ E
Sbjct: 67 ELNTFESSILIKKGKTTAVWKSLLSEFDIQNVFFNKDYE 105
>gi|398837372|ref|ZP_10594673.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. YR522]
gi|398208714|gb|EJM95423.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. YR522]
Length = 497
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 35/243 (14%)
Query: 43 RSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYS------NEMLELVI 95
R +++WF++DLR DH L A S+ + V ++VFD IL + + ++ ++
Sbjct: 3 RFDHSLVWFRRDLRDTDHAALYYALSQSRQVSCVFVFDRDILDALAADGVGQDRRVDFIL 62
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
++ +L +L+ G L++R I EL ++ +VFA + E + V +
Sbjct: 63 QSVTELDTALRGAGGGLIVRHASATAAIPELARQLGVQAVFANTDYEPQAVERDQAVADR 122
Query: 156 LAK--VSLVDGKPKICLWQ--------TPF-----YDIKNLNDLPVSHNEFRKLQRPL-- 198
L+K + K ++ + TPF Y + L + +F P+
Sbjct: 123 LSKDGILFFSSKDQVIFEKDEILTRSDTPFSVFTPYKNAWMARLAEADGDFFLKPYPVAR 182
Query: 199 -TSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLS 257
++PP A A+ P+P+ +L P L+E A+ +L D L
Sbjct: 183 YARALVPPPAALAQ------PIPSIAQL----GFAPSNLDELKIPTGMSGADALLDDFLD 232
Query: 258 KLG 260
++G
Sbjct: 233 RIG 235
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
+ W ++DLR+DD++GL A ++ +V ++ FD ++L + + ++ ++ L++L
Sbjct: 6 LFWHRRDLRLDDNIGLNEAQQHSNKIVGVFCFDPKLLQSDQVAPARIKYLLGCLKELAAG 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
K+ GS+L+ I +L E + A++VF +VE + R+ V L
Sbjct: 66 YKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHDVEPYGRKRDRAVQSAL 117
>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
Length = 481
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 28 CVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI--LS 84
V V P A K ++++ + DLR+ DH L AA + + VVPL+V D I +
Sbjct: 15 VVRPVRPPAEPAVK----ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVG 70
Query: 85 RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH 144
++ + L DL L+E+G L++R G V+RELV A V V +
Sbjct: 71 FHAANRAAFLADCLGDLDAGLRERGGRLVVRAGEPAQVVRELVGSTGAERVHVAAGVSAY 130
Query: 145 LR 146
R
Sbjct: 131 AR 132
>gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
Length = 434
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIF---ALEDLRK 103
+ W ++DLR+ DH L A K VVP++VFD IL+ ++ V F LEDL++
Sbjct: 7 LCWLRRDLRLLDHAALYHALKSGNPVVPVFVFDTNILNDLDDKHDRRVTFIHDILEDLQE 66
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L + GS L + +G + E VF + E
Sbjct: 67 KLSKLGSTLDVFYGTPQQAFEHYTREYDVQEVFTNIDYE 105
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL A + VV ++ D IL + + + +I L++L+++
Sbjct: 6 LFWHRRDLRISDNIGLSTARQRSPHVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQN 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ GS L+I G+ I L E +KA +VF +VE
Sbjct: 66 YQQAGSQLLILKGKPSQAIPILAESLKAQAVFWNLDVE 103
>gi|336314971|ref|ZP_08569885.1| deoxyribodipyrimidine photolyase [Rheinheimera sp. A13L]
gi|335880798|gb|EGM78683.1| deoxyribodipyrimidine photolyase [Rheinheimera sp. A13L]
Length = 505
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
+++WFK+DLR+DDH L A++ AV+P+Y+ + + + + + +
Sbjct: 3 SLVWFKRDLRIDDHGPLAEAARKGAVLPVYIIEPDYWQQPDTSVRQWLFIEQSLQLLDQQ 62
Query: 107 EQ--GSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++ G V+R+L +E V + EE
Sbjct: 63 LTALGQPLLVLKGPATQVLRQLCQEFPIAQVLSHEET 99
>gi|156977867|ref|YP_001448773.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
gi|156529461|gb|ABU74546.1| hypothetical protein VIBHAR_06659 [Vibrio harveyi ATCC BAA-1116]
Length = 493
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DHL L A S V LY+F+ +L YS V +++D+
Sbjct: 6 LVWLKRDLRLTDHLPLQHAVSSKNPTVLLYIFEPMLLDDPHYSERHWRFVWQSIQDMNAQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + + + FG + + + + +VF+ +E+
Sbjct: 66 LAQHNQKVSVMFGNARDCLSAIQNQFSIDAVFSHQEI 102
>gi|92429550|gb|ABD93519.2| DNA photolyase protein [Solanum cheesmaniae]
Length = 130
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+I ++ DLRK+L+ +GSDL++R G+ E V+ EL + V A +V+A EV + + +
Sbjct: 13 FLIDSIADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKI 72
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRK 193
D + +G W + Y + + L +P ++ FR+
Sbjct: 73 DAVMKD----EGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFRE 113
>gi|149925501|ref|ZP_01913765.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
gi|149825618|gb|EDM84826.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
Length = 453
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASK----YQAVVPLYVFD-HRILSRYSNEMLELVIF-ALEDL 101
V+WFK+DLR+ DH+ L A + + V+PLY+ + +IL ++ +L + L+DL
Sbjct: 3 VLWFKRDLRLSDHMPLFEAMRNAKHHGLVLPLYIHEPSQILDAHTARQHQLFVHECLDDL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
++ + G L G +V+ L + K T ++A +E
Sbjct: 63 QQQFAKVGGYLHEELGEAVDVLAALHAQFKFTHLWAHQET 102
>gi|375142760|ref|YP_005003409.1| deoxyribodipyrimidine photolyase [Mycobacterium rhodesiae NBB3]
gi|359823381|gb|AEV76194.1| deoxyribodipyrimidine photolyase [Mycobacterium rhodesiae NBB3]
Length = 430
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ D L+ AAS V+ YV D R+ + L+ + AL DL +SL
Sbjct: 4 LLWFRRDLRLHDLPALLDAASADNEVLACYVLDPRLKASSGQRRLKYLYDALRDLDESLD 63
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ L + GR + I +LV+ + A+SV + R+ V E L V L
Sbjct: 64 GR---LYVTRGRPDQRIPKLVKAIGASSVHVSGDFTPFGRRRDDAVREALGDVPL 115
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM----LELVIFALEDLR 102
+ W ++DLR+ D++GL A K VV ++ FD IL + N++ + +I L++L+
Sbjct: 6 LFWHRKDLRISDNIGLAKARQKSSKVVGIFCFDSNILEQ--NDIAPVRIAYLIGCLQELQ 63
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ ++ GS+L+ G ++I +L + A +VF +VE
Sbjct: 64 QTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVE 103
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
V W ++DLR D+ L AA++ +V+P ++FD +L S + ++ +L +LR +E
Sbjct: 5 VHWHRRDLRATDNHSLSAAAETGSVIPAFIFDPAVLEFASPPRVAFMLESLSELRAWYRE 64
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSV 135
+G DL++ G + + E A V
Sbjct: 65 RGGDLVVATGDPREELPRIAREHGAERV 92
>gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
Length = 442
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 82/338 (24%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLEL------------- 93
++WF+ DLRV D+ L A V+ +Y FD I + SN L++
Sbjct: 4 LVWFRNDLRVTDNHSLKKACDNDGKVIGIYCFD-PIFYQNSNFGLDIDLELPFGKTGKFR 62
Query: 94 ---VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMA 150
+I A+EDLRK L + G L++ NV ++++E T+++ ++E +
Sbjct: 63 AQFIIEAIEDLRKQLDKHGIPLLVYHDSPVNVFPDIIKEYDITNIYLQKEWTRDEVEQEN 122
Query: 151 IVDETLAKVSLVDGKPKICLWQTPF----YDI--KNLNDLPVSHNEFRKLQRPLTSPILP 204
++ L L++ KPK F +D+ N ++P +FRK
Sbjct: 123 LLGTAL---KLLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRK----------- 168
Query: 205 PTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSK 264
K E + + T ++K++ E P + + + ++ E+ D S +
Sbjct: 169 ------KCEKE-SHIRTLVDIKDYQQELPSVVSTTIPQLEDLGLESFEKDHRSAFPWKG- 220
Query: 265 RNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLR 324
+ +RL+ F+ T K LQ Y + G V
Sbjct: 221 ----GAIAAWERLNHYFWDTGK--------------LQYYKKTRNGLV------------ 250
Query: 325 NAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKE 362
G +++ L +G IS R +++E +FEKE
Sbjct: 251 ------GIDYSSKLSTWLAIGCISAREIYWEVQRFEKE 282
>gi|422782518|ref|ZP_16835303.1| DNA photolyase [Escherichia coli TW10509]
gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509]
Length = 472
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA +Y + V+ LY+ R + + S E + L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F +++++ E + T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + + + + L++L++
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 66 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 107
>gi|418296029|ref|ZP_12907873.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539461|gb|EHH08699.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 479
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
A++WF++DLR+ D+L L+AA ++ V+P+YV + + + +L L +L
Sbjct: 8 AIVWFRKDLRLSDNLALLAAVEHGGPVIPVYVRE-KSCGPLGGAQEWWLHHSLACLSAAL 66
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
++ GS L++ G +R+L+ E A +VF
Sbjct: 67 EKTGSRLVLASGDAGETLRQLISETGADAVF 97
>gi|431797441|ref|YP_007224345.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
gi|430788206|gb|AGA78335.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
Length = 431
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLELVIFA---LEDLR 102
+ W ++DLR++D+ L A + + V+PL++FD IL ++ V F L+ L+
Sbjct: 5 TLFWMRRDLRLEDNTALFYACQQENNVLPLFIFDTTILEELDDKKDARVAFIHQRLQQLK 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++L+ +G + ++ G+ + ++LV+E +V+ + E
Sbjct: 65 EALEAKGFSIWVKTGKPLEIFKQLVDENDIAAVYCNRDYE 104
>gi|387606186|ref|YP_006095042.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
Length = 472
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S +L+ L LR
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLNGLRI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +I+++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
Query: 160 SLVDG 164
L +G
Sbjct: 125 -LCEG 128
>gi|453328412|dbj|GAC89303.1| deoxyribodipyrimidine photolyase [Gluconobacter thailandicus NBRC
3255]
Length = 483
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 10/150 (6%)
Query: 39 TSKGRSGSA---VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRI--LSRYSNEMLE 92
+++G SA ++WF++DLR DH L AA+ ++ +YV D L
Sbjct: 2 SAQGHQTSASPVIVWFREDLRFSDHPALQAATATGHPLICVYVLDDETPALHALGGASRW 61
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ AL DLR +L L+ G E +I +L +E A V+ + R+
Sbjct: 62 WLHGALSDLRSTLSRHHGTLLTLKGSAEKLIPQLAKETDAQGVYWHHRLHQKEREQ---- 117
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKNLN 182
DE +A G W T D K +
Sbjct: 118 DEQIASALDKQGVSSEASWGTVLLDPKQVQ 147
>gi|389746080|gb|EIM87260.1| cryptochrome [Stereum hirsutum FP-91666 SS1]
Length = 641
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 47/190 (24%)
Query: 51 FKQDLRVDD-----HLGLVAASKYQAVVPLYVFDHRILS--------------------R 85
++DLR+ D H+ + +Y ++PLY+F H L R
Sbjct: 11 LRRDLRLADNPILHHISTSRSPQYTHLLPLYIFPHNQLEVSGSVKSPFPEARSQVAGFWR 70
Query: 86 YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
+ + +L D+++ L+ +GS L+IR G+V V+R L++ V E E + +
Sbjct: 71 CGPHRAKFLAESLWDVKEGLEGKGSGLVIRVGKVGEVVRGLID------VIMENEAGHVV 124
Query: 146 RQMMAIVDETLAKVSLVDGKPKIC--------LWQTPFYDI-------KNLNDLPVSHNE 190
M + + D K K+C LW+ Y I N+ DLP
Sbjct: 125 GVWMTGEEGQEEQREESDVK-KVCEGVGVEFQLWRDEKYLIDDRDLPFDNIKDLPDVFTS 183
Query: 191 FRKLQRPLTS 200
FRK PL S
Sbjct: 184 FRKSVEPLNS 193
>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
Length = 482
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA Q VV ++ D IL R + + +I L++L++
Sbjct: 6 LFWHRRDLRISDNIGLAAARHLSQKVVGIFCLDFNILQRDDVAPARVAYMIGCLQELQRR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
E GS L+I I +L ++A +VF +VE + R+ V L + +
Sbjct: 66 YLEAGSQLLILQAEPTQGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQAGI 122
>gi|448479118|ref|ZP_21604042.1| deoxyribodipyrimidine photolyase [Halorubrum arcis JCM 13916]
gi|445822752|gb|EMA72515.1| deoxyribodipyrimidine photolyase [Halorubrum arcis JCM 13916]
Length = 519
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA------VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
+ W ++DLRV D++GL AA+ P++VFD +L S+ + ++ L L
Sbjct: 3 LFWHRRDLRVADNVGLAAATGAGDDADRGPAAPVFVFDPDVLDHASDVRVRRLLDGLAAL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
R +E+GSDL++ G E+++ L + + A V + R+ A V L V +
Sbjct: 63 RDDYRERGSDLLVARGDPESLLPRLADALDAERVVWNRDYSGLARERDAAVRRALDAVDV 122
Query: 162 V 162
Sbjct: 123 A 123
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + + + + L++L++
Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 65 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 106
>gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
Length = 456
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFD---HRILSRYSNEMLELVIFALE 99
S AV+ F DLR+ DH L AA + VVPL+V D HR N L + L
Sbjct: 2 SSVAVVLFTSDLRLHDHPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNR-LAFLADCLA 60
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
DL L+++G L++R G ++ +VE+ A SV V + Q + E LA
Sbjct: 61 DLDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALA 118
>gi|386821526|ref|ZP_10108742.1| deoxyribodipyrimidine photolyase [Joostella marina DSM 19592]
gi|386426632|gb|EIJ40462.1| deoxyribodipyrimidine photolyase [Joostella marina DSM 19592]
Length = 434
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++ WF++DLR++D++G + A K V+P+++FD IL ++ + + L+++R
Sbjct: 6 SIFWFRRDLRLNDNIGFLEALKSGNPVMPIFIFDSNILQELPKNDARVTFIHGRLQEMRM 65
Query: 104 SLKEQ-GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
+E+ S + + F NV + LV+E + +++ + E + ++
Sbjct: 66 EFQERYDSSIALYFDTPINVFKSLVKEYEIQAIYTNRDYEPYAKE 110
>gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 487
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALED 100
+ ++W ++DLR+ D+ L AA + VVP+++FD ++L R + + ++ AL++
Sbjct: 2 TSPVLLWHRRDLRLGDNTALHEAAQRSSQVVPVFIFDPQMLRRSDMAPARVAFLLQALQE 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L++ + G L+ R G +R L ++ A +VF + E Q + V +LA
Sbjct: 62 LQERYAQMGIPLIWRLGDPSVELRCLAIDLGARAVFWNADGEPFALQQESRVQASLAAAG 121
Query: 161 L 161
+
Sbjct: 122 I 122
>gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.]
Length = 434
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNE--MLELVIFALEDLRK 103
++ WF++DLR+DD++G + A K V+P+++FD IL + + + + L+ +R
Sbjct: 5 SIFWFRRDLRLDDNVGFLEALKSDYPVLPIFIFDKEILDKLPKDDARVTFIYETLQKMRD 64
Query: 104 SLK-EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L+ + S L + +G+ ++ ++++++ + V+ + E
Sbjct: 65 RLQNDHTSSLALFYGKPIDIWKQILKDYEVKEVYTNRDYE 104
>gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
Length = 450
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-----QAVVPLYVFDHRILSRYSNEMLELVIFALEDLR 102
V WF++DLR+ D+ LVAA + AVVPL+V D + + + + + +L L
Sbjct: 4 VHWFRRDLRLADNPALVAAVEAARRADDAVVPLFVVDPGLWTAAAGPRVAYLARSLRALD 63
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+L + L++R GR ++V+ + EV+A +V E + R+ V + L V LV
Sbjct: 64 AALDGR---LVVRHGRPQDVVPAVAREVEAPTVHVTAATEPYGRRRDDAVAQALGDVPLV 120
>gi|374329028|ref|YP_005079212.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
gi|359341816|gb|AEV35190.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
Length = 471
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 44 SGSAVI-WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALED 100
S S VI WF+QDLR+ D+ L AA V+PLY+ + + + + ++L+
Sbjct: 2 SASIVIHWFRQDLRLSDNPALSAACDVGEVIPLYILNDKEYGARKLGGATKNWLHYSLKA 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L +SLK Q L+I G +I L++E A VF
Sbjct: 62 LNESLKGQ---LLIMRGDPAVIINSLIQETGAAGVF 94
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRY-----SNEMLELVIFALEDL 101
V+WF+ DLR+ DH LVAA A ++PLY+ D ++ S+ L+ + AL
Sbjct: 7 VLWFRNDLRLGDHAALVAAVHTGAPILPLYILDDASPKQWKMGGASHWWLDKSLAALAG- 65
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L +G L++R G E + ++EE A +V+
Sbjct: 66 --DLASRGGPLVLRRGDSETELLRMIEETGAAAVY 98
>gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
nitrogenifigens DSM 19370]
Length = 455
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD-----HRILSRYSNEMLELVIFAL 98
+ ++W +QDLR+ D +AA+ VVP+YV D HR + S L +L
Sbjct: 2 TAPVLVWLRQDLRLADQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLH---HSL 58
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
+ L + L+++GS L++R G + EL EV A V A VE R V +TL
Sbjct: 59 KSLDEGLRQRGSRLILRRGPAHRELAELAREVGARRVHALAHVEPWWRNAERAVAKTL 116
>gi|448506272|ref|ZP_21614382.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 9100]
gi|448525108|ref|ZP_21619526.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 10118]
gi|445699922|gb|ELZ51940.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 9100]
gi|445700080|gb|ELZ52095.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 10118]
Length = 518
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA------VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
+ W ++DLRV D++GL AA+ P++VFD +L S+ + ++ L L
Sbjct: 3 LFWHRRDLRVADNVGLAAATGAGDDADRGPAAPVFVFDPDVLDHASDVRVRRLLDGLAAL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
R +E+GSDL++ G E+++ L + + A V + R+ A V L V +
Sbjct: 63 RDDYRERGSDLLVARGDPESLLPRLADALDAERVVWNRDYSGLARERDAAVRRALDAVDV 122
Query: 162 V 162
Sbjct: 123 A 123
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYV--FDHRILSRYSNEMLELVIFALEDLRKS 104
++WF++DLR+ DH L A + +VPLY+ +H + +LE L S
Sbjct: 20 ILWFRKDLRISDHAALATAVDEGFRIVPLYIREPEHAGTGPLGAAQAWWLHHSLEALSAS 79
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L G+ L++R G + + +L+ E A++VF
Sbjct: 80 LDALGASLVLRSGAADAALSDLITETGASAVF 111
>gi|388600650|ref|ZP_10159046.1| deoxyribodipyrimidine photolyase [Vibrio campbellii DS40M4]
Length = 493
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DHL L A S V LY+F+ +L YS V +++D+
Sbjct: 6 LVWLKRDLRLTDHLPLQHAVSSKNPTVLLYIFEPMLLDDPHYSERHWRFVWQSIQDMNAQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + + + FG + + + + +VF+ +E+
Sbjct: 66 LAQHDQKVSVMFGNARDCLSAIQNQFSIDAVFSHQEI 102
>gi|451977581|ref|ZP_21927659.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
gi|451929569|gb|EMD77308.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
Length = 493
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
V+W K+DLR+ DH L A S V LY+ + +L+ YS V +L+D+ ++
Sbjct: 6 VVWLKRDLRLTDHQPLTQALSSKHPTVLLYIVEPLLLNNPHYSERHWRFVWQSLQDMNET 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
LK G + + FG + + + + +VF+ +E+
Sbjct: 66 LKAYGHRITVLFGDALACFQSIQMQYQINAVFSHQEI 102
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + + + + L++L++
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 66 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 107
>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559511|ref|YP_006602235.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
gi|423359850|ref|ZP_17337353.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083011|gb|EJP91275.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|401788163|gb|AFQ14202.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
Length = 476
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
++ F++D R+ D+ L A + V+P+YV D L +++ + A+ D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYVQDEDFLMGEASKWW--LHHAVIDVKKQLEA 63
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E I L+E++ T+V+
Sbjct: 64 LGSTLIIRKGRTEEEILSLIEQLDITAVY 92
>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|386350987|ref|YP_006049235.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|346719423|gb|AEO49438.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
Length = 478
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFD------HRILSRYSNEMLELVIFALED 100
++WF+ DLR+ D+ L AA A V+P Y+ D HR L + L +L
Sbjct: 6 LVWFRDDLRLADNPALCAALDSGAPVIPFYLLDDSTSDGHRPLGGATRWWLGR---SLTS 62
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L +S+ ++G L++R G + + EL E A ++FA L M ++ D+ L V
Sbjct: 63 LAESIAQRGGRLVLRRGEALSAVPELAAETDAAALFANR-----LYGMDSLRDDDLFMVL 117
Query: 161 LVDG 164
V G
Sbjct: 118 RVAG 121
>gi|254227310|ref|ZP_04920742.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262396423|ref|YP_003288276.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
[Vibrio sp. Ex25]
gi|151939922|gb|EDN58748.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262340017|gb|ACY53811.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
[Vibrio sp. Ex25]
Length = 493
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
V+W K+DLR+ DH L A S V LY+ + +L+ YS V +L+D+ ++
Sbjct: 6 VVWLKRDLRLTDHQPLTQALSSKHPTVLLYIVEPLLLNNPHYSERHWRFVWQSLQDMNET 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
LK G + + FG + + + + +VF+ +E+
Sbjct: 66 LKAYGHRITVLFGDALACFQSIQMQYQINAVFSHQEI 102
>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium fabrum str. C58]
gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium fabrum str. C58]
Length = 479
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
++ ++WF++DLR+ D+L L+AA ++ V+P+Y+ + + + +L L
Sbjct: 4 KTAPVIVWFRKDLRLSDNLALLAAVEHGGPVIPVYIRE-KSAGPLGGAQEWWLHHSLAAL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
SL++ G L++ G E ++R+L+ E A +V
Sbjct: 63 SSSLEKAGGRLVLASGDAERILRDLISETGADTV 96
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 40 SKGRSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDH--RILSRYSNEMLELVIF 96
S ++ A++WF+ DLR+ DH L AA+ ++ LY+ D L +
Sbjct: 2 SSSQNRPAIVWFRDDLRMADHPALHEAAASGWPLICLYILDDVTPALHPLGAAARWWLRG 61
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV--------------------F 136
AL DLR++L++QG L+ G E ++ +L ++ A SV
Sbjct: 62 ALADLRRNLEKQGGTLLTLSGSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTL 121
Query: 137 AEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
E+E E H + +VD + G K+C
Sbjct: 122 EEQECEVHAQWGTVLVDPDTVQTK-QGGFYKVC 153
>gi|417139698|ref|ZP_11983120.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
gi|417307171|ref|ZP_12094045.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|338771226|gb|EGP25972.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|386157426|gb|EIH13768.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
Length = 472
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S +L+ L LR
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLNGLRI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +I+++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
Query: 160 SLVDG 164
L +G
Sbjct: 125 -LCEG 128
>gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor]
Length = 679
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 38 ATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLE 92
TS G G +++WF++DLRV+D+ L A + AV+PL+++ H R S L+
Sbjct: 2 GTSGG--GCSIVWFRRDLRVEDNPALAAGVRAGAVLPLFIWAPEEEGHYYPGRVSRWWLK 59
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+L L SL+ G+ L+ R R + + L+E +K T A++ HL +++V
Sbjct: 60 Q---SLSHLDISLRSLGTSLVTR--RSTDSVSSLLEVIKLTG--AKQIFFNHLYDPISLV 112
Query: 153 DETLAKVSLV 162
+ AK L
Sbjct: 113 RDHRAKEVLT 122
>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB5]
Length = 487
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNEMLEL-------VIFALE 99
++WF+ DLR+ DH L AA+ ++ +YVFD S + L + +L
Sbjct: 10 IVWFRDDLRLSDHPALHQAAASGGPLICIYVFDEDSAQLRSPQARPLGGASRWWLAQSLR 69
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV-FAEEEVEYHLRQMMAIVDETLAK 158
L SL+++G+ L++R G +I EL +V A++V + E E+ H A+ D+
Sbjct: 70 ALAASLEKRGARLILRRGPAAAIIAELARQVDASAVHWNEIEIAPH----RAVADDLAEA 125
Query: 159 VSLV 162
+S+
Sbjct: 126 LSVA 129
>gi|407726057|dbj|BAM46126.1| cryptochrome DASH [Lentinula edodes]
gi|407955603|dbj|BAM48913.1| cryptochrome dash [Lentinula edodes]
Length = 622
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 37/192 (19%)
Query: 51 FKQDLRVDDH---LGLVAASKYQAVVPLYVF------------DHRILSRYSNEMLELVI 95
F++DLR+ D+ L ++ ++PLY+ D ++ S Y L
Sbjct: 7 FRRDLRISDNPIFHHLQKHPQFCHILPLYILPPNQIEVSGFLQDPKLESHYPQARSRLGK 66
Query: 96 F-------------ALEDLRKSLKEQGSDLMIRFGRVENVIREL---------VEEVKAT 133
F ++ DL++SLK +GSDL++R GR+E+V+ ++ V V T
Sbjct: 67 FWRCGPHRAKFLAESIWDLKESLKHRGSDLIVRVGRMEDVVGQILKRKEFQGKVGAVWMT 126
Query: 134 SVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK 193
+A EEV LR A+ E K+ + L + + +P FRK
Sbjct: 127 KDWASEEVNEELRIERAVKKEGDGKIEWKVWDGEEMLLNDNDFSTSDPAQVPDVFTSFRK 186
Query: 194 LQRPLTSPILPP 205
PL I P
Sbjct: 187 SFEPLRDNIRVP 198
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ ++W ++D R+ D+ L A+K VVP+Y+ D S + + AL D + S+
Sbjct: 4 TIIVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDYEESSMGSASKWWLHHALNDFKNSI 63
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL----RQMMAIVDETLAKVSL 161
++ L+++ G ++V+++L+ + A ++ E H+ +++ A E +
Sbjct: 64 EKIQGTLIVQKGNPKDVLQKLLHQTNAQDIYWNRRYEPHVLKRDKELQAFFSEQQINIRT 123
Query: 162 VDG 164
+G
Sbjct: 124 FEG 126
>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
Length = 499
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 61/111 (54%), Gaps = 14/111 (12%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL-------------SRYSNEML 91
+ ++WF++DLR D+ L A K+ + V ++VFD IL ++ + +
Sbjct: 13 TGLVWFRRDLRHTDNAALYYALKHCERVWCVFVFDTTILQPLIDKWQSRHPGTQAQDRRV 72
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
E ++ +L +L ++L+ +G L++ +G +++ +L E++ +VFA + E
Sbjct: 73 EFILASLHELDEALRARGGGLVVLYGDPVDLVPKLAAELEVDAVFANHDYE 123
>gi|395760275|ref|ZP_10440944.1| cryptochrome, dash family protein [Janthinobacterium lividum PAMC
25724]
Length = 444
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 70/185 (37%), Gaps = 35/185 (18%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--------RYSNEMLELVIFALE 99
+ WF+ DLR+DD+ L A + + L+V+ HR S R S + L
Sbjct: 14 IYWFRNDLRLDDNPALRQACQRAGHL-LFVYCHRSASVATRWDVPRTSPHRQHFLRSGLA 72
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
DL L GS L+ G +V+ L + AT++ EE +A +E
Sbjct: 73 DLATQLASYGSQLLEVEGDPAHVLLALAHSIGATTIHCEE---------IAAPEEQGELA 123
Query: 160 SL-VDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK------------LQRPLTSPI 202
+L G LWQ+ D L LP FR L RP T P
Sbjct: 124 ALRAAGLTVEALWQSSLLDPAALPFPCAALPEVFTNFRTLVERQQVVPTAPLARPTTIPP 183
Query: 203 LPPTL 207
LPP
Sbjct: 184 LPPAF 188
>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
Length = 493
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY--SNEMLELVIFALE 99
R ++WF++DLR DH L A ++ + V +++FD IL ++ +E + +L
Sbjct: 3 RFEKTLVWFRRDLRSVDHAALHHALAQSRQVYCVFIFDRAILDALPRADRRVEFIHASLL 62
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L ++L+ G L+++ E I EL E+ +VFA + E
Sbjct: 63 ELAQALRALGGGLIVQHAWAETAIPELAIELGVDAVFANHDYE 105
>gi|444380451|ref|ZP_21179584.1| Cryptochrome [Enterovibrio sp. AK16]
gi|443675478|gb|ELT82207.1| Cryptochrome [Enterovibrio sp. AK16]
Length = 496
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 37 AATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL--SRYSNEMLEL 93
++ ++ R +++WFK+DLR+ DH L AA + V+ LY+F+ +L YS
Sbjct: 3 SSPTQNRDAISLVWFKRDLRLTDHAPLQAAIASGLPVLLLYIFEPILLEDEHYSERHWRF 62
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
V +LEDL + L G +++ + L + K ++++ EE
Sbjct: 63 VWQSLEDLNQQLAPFGGKVLVVRSECIEALSSLHTQFKIKTLYSHEET 110
>gi|432849009|ref|ZP_20080379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
gi|431401751|gb|ELG85085.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
Length = 472
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S +L+ L LR
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLNGLRI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +I+++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
Query: 160 SLVDG 164
L +G
Sbjct: 125 -LCEG 128
>gi|261855905|ref|YP_003263188.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
gi|261836374|gb|ACX96141.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
Length = 507
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
V+WFK+DLR+ DH L A+K V+ LY+ + + + S + L++L+
Sbjct: 3 VVWFKRDLRLSDHTALARAAKQGPVLLLYILEPELWQQPDMSERQFRFLTACLDELKTVA 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+++ +I+ G V+ L ++ T++++ +E
Sbjct: 63 QDRSIHFVIKVGEAVEVLTSLHQKYAITALWSHQET 98
>gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
Length = 445
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ D LV A++ V+ YV D R+ L+ + AL DLR L
Sbjct: 4 LLWFRRDLRLHDLPALVDAAQGDGQVLACYVLDPRLHRSAGPRRLQYLHDALRDLRDQLD 63
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ L++ GR E I L + + A++V+ + R+ V + L +V L
Sbjct: 64 GR---LLVTRGRPEQRIPALAKSIDASAVYVSGDFTPFGRRRDDAVRKALGEVPL 115
>gi|424041674|ref|ZP_17779554.1| cryptochrome-like protein cry2 [Vibrio cholerae HENC-02]
gi|408890470|gb|EKM28578.1| cryptochrome-like protein cry2 [Vibrio cholerae HENC-02]
Length = 493
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DHL L A S V LY+F+ +L YS V +L+D+
Sbjct: 6 LVWLKRDLRLTDHLPLQHALSSENPTVLLYIFEPMLLDDPHYSERHWRFVWQSLQDMDVQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + + + FG + + + ++ +VF+ +E+
Sbjct: 66 LAQHDQKVSVMFGNARDCLSAIQKQFNINAVFSHQEI 102
>gi|357974946|ref|ZP_09138917.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. KC8]
Length = 456
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRK 103
++++WF+QDLR+ D LVAA+ VV LYV D R + +L L
Sbjct: 2 TSILWFRQDLRLADQRALVAAASEGPVVCLYVLDDERPGPWRIGGAQRWWLHHSLSALAD 61
Query: 104 SLKEQGSDLMIRFG-RVENVIRELVEEVKATSVFAEEEVE 142
+L ++G+ L++R G VE V+R L EV A V A E
Sbjct: 62 ALVDRGAQLILRRGDAVEEVLR-LACEVGAARVHALRHYE 100
>gi|448600883|ref|ZP_21656262.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734896|gb|ELZ86452.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 503
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 53/256 (20%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-------------ILSRYSNEMLE 92
+++ WF++DLR+ D+ L AA VVP+Y D R +
Sbjct: 5 TSLAWFRRDLRLHDNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ +L DLR SL+++GSDL++R R E+V+ E+ V A V ++
Sbjct: 65 FRLESLADLRASLRDRGSDLVVRESRPESVLPEVAAAVDADFVTVHTRPTPEESRV---- 120
Query: 153 DETLAKVSLVDGKPKI-CLWQTPFYDIKN----LNDLPVSHNEFRKL------------- 194
E+ + L DG ++ W + + L+DLP ++ FRK
Sbjct: 121 -ESAVETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVESAAEDAGTGDA 179
Query: 195 --------------QRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESW 240
+ PL P +PP A D G LP +L + N + +
Sbjct: 180 AAGDEHASDGDPGGRDPLPEPTVPPLPDDAP---DAGDLPAVSDLVGTADANADRAPDDR 236
Query: 241 TLINNMSAETILTDKL 256
++ ET D++
Sbjct: 237 GVLPFDGGETAALDRV 252
>gi|448568178|ref|ZP_21637755.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727128|gb|ELZ78742.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 503
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 53/256 (20%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-------------ILSRYSNEMLE 92
+++ WF++DLR+ D+ L AA VVP+Y D R +
Sbjct: 5 TSLAWFRRDLRLHDNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ +L DLR SL+++GSDL++R R E+V+ E+ V A V ++
Sbjct: 65 FRLESLADLRASLRDRGSDLVVRESRPESVLPEVAAAVDADFVTVHTRPTPEESRV---- 120
Query: 153 DETLAKVSLVDGKPKI-CLWQTPFYDIKN----LNDLPVSHNEFRKL------------- 194
E+ + L DG ++ W + + L+DLP ++ FRK
Sbjct: 121 -ESAVETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVESAAEDAGTGDA 179
Query: 195 --------------QRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESW 240
+ PL P +PP A D G LP +L + N + +
Sbjct: 180 AAGDEHASDGDPGGRDPLPEPTVPPLPDDAP---DAGDLPAVSDLVGTADANADRAPDDR 236
Query: 241 TLINNMSAETILTDKL 256
++ ET D++
Sbjct: 237 GVLPFDGGETAALDRV 252
>gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
Length = 468
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 46 SAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALE 99
+A+ WF++DLR+ D+ AA+ + VVP+Y+ +HR L L+
Sbjct: 3 TAIHWFRRDLRITDNTALAAAAAAHDQVVPVYIVSEWKAEHRWCGAPRQAFL---CGCLD 59
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
L ++L+ +G L+IR GR + V+++LV++ +A +++ + + R M +E L K+
Sbjct: 60 SLARNLEAKGGRLIIRQGRADAVLKKLVQQTEAEAIYFNRDPDPFGRAM----EERLTKI 115
Query: 160 S 160
+
Sbjct: 116 A 116
>gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601]
gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601]
Length = 473
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++W ++DLR+ DH L A K + V+P+++ DH + + L + L ++L
Sbjct: 8 IVWIRRDLRLSDHATLHEAGKSGRPVIPVFIRDHTVDQLGAAPKWRLGL-GLGCFGEALA 66
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
E+GS L++R G V+ L++E A +V+
Sbjct: 67 EKGSRLILRAGPAREVLDALIDETGAGAVW 96
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--SRYSNEML 91
+ A+TS G ++WF++ LRV D+ L + + A P++V D SR +
Sbjct: 2 SVASTSAAAKGRTLVWFRKALRVHDNPALSRGTLHATACQPVFVLDPWFCQPSRVGANRM 61
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
++ +L DL L+ +GS L++ G V+ ++ + SV E ++E + + A
Sbjct: 62 RFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDAA 121
Query: 152 VDETLAKVSL 161
V L + +
Sbjct: 122 VRGALERAGV 131
>gi|358638826|dbj|BAL26123.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. KH32C]
Length = 480
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS---RYSNEMLELVIFALE 99
+A++WF++DLR DH L A ++ V ++VFD IL R + +E + ++
Sbjct: 2 DAAALVWFRRDLRCFDHAALHHALRRFARVHCVFVFDREILDALPRREDRRIEFIWRSIR 61
Query: 100 DLRKSLKE-------QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L L G+ L++R R + + +L E+ +VFA + E
Sbjct: 62 ELDAELDRLSRQAGGAGAGLIVRHARADEAVPQLASELGVAAVFANRDYE 111
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILSRYSNEMLELVIF--ALEDLRK 103
+IWF++DLR+ D+ L AA + ++VP+Y+ L ++ + V +L
Sbjct: 6 IIWFRRDLRLADNPALRAALDDDFDSIVPVYIHAPHELGDWAPGAAQRVWLHDSLAAFSD 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+L+ GS L+IR G +V+ L+ E ATSV+
Sbjct: 66 ALEALGSRLVIRRGDTTDVLDTLIAESGATSVY 98
>gi|309779655|ref|ZP_07674414.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
5_7_47FAA]
gi|349616585|ref|ZP_08895722.1| hypothetical protein HMPREF0989_03968 [Ralstonia sp. 5_2_56FAA]
gi|308921596|gb|EFP67234.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
5_7_47FAA]
gi|348612230|gb|EGY61852.1| hypothetical protein HMPREF0989_03968 [Ralstonia sp. 5_2_56FAA]
Length = 516
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV DH LV A++ V+ LYV + + ++ +++ + L DL + L
Sbjct: 5 IVWFKRDLRVHDHAPLVHAARRGKVLCLYVIEPSLWAQPDAASQHYLFIQECLHDLAEQL 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G+ L + G V V L + + + EE
Sbjct: 65 RACGARLQVAVGEVTEVFGRLHAAAAFSHLVSHEET 100
>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
Length = 486
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 48 VIWFKQDLRVDDH--LGLVAASKYQAVVPLYVFDHRILSR-YSNEMLELVIFA-LEDLRK 103
+ WF++DLR+ DH L A + AV+P+++ D IL Y L V A LE L
Sbjct: 4 ICWFRRDLRLTDHRALYAAAEASAGAVIPVFILDDTILHDGYVGAALIAVTLAMLEALDH 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L+++GS L++R G+ ++ LV E +A+ V+
Sbjct: 64 DLQQRGSRLIVRHGQPLAELQRLVSETQASGVY 96
>gi|401782500|dbj|BAM36553.1| cryptochrome 2 [Fragaria x ananassa]
Length = 646
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIF 96
G S ++WF++DLR++D+ L AA + AV P+Y++ H R S L+
Sbjct: 2 GSSNKTIVWFRRDLRIEDNPALAAAVRDGAVFPVYIWCPKDEGHFYPGRVSRWWLKQ--- 58
Query: 97 ALEDLRKSLKEQGSDL-MIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
+L L +SLK G+ L +I+ + I + ++ + AT V V HL +++V +
Sbjct: 59 SLAHLDQSLKSLGAQLALIKTDSTVSAILDCIQAIGATKV-----VFNHLYDPVSLVRDH 113
Query: 156 LAKVSLVD 163
K LV+
Sbjct: 114 NIKGKLVE 121
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA K Q V+ ++ D IL R + + ++ L++L++
Sbjct: 6 LFWHRRDLRISDNIGLAAACQKSQKVIGVFCLDPDILERDDIAPARVTYMMGCLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
E GS L+I I L + + A +V +VE + R V + L + +
Sbjct: 66 YAEAGSQLLILHQNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEEKGIA 123
>gi|343496946|ref|ZP_08735031.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342820399|gb|EGU55222.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 444
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 35/183 (19%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVP-LYVFDHRIL--SRYSNE-----MLELVIFA 97
+AV WF DLR++D+ L+ A + + + LY D R L RYS + L ++ +
Sbjct: 3 NAVYWFTNDLRIEDNPALIRALQTENTLHCLYCLDPRSLKPGRYSTKPIGEKRLSFLLQS 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL- 156
L +L ++L+ G L + +++ L ++ Y +R++ V+ L
Sbjct: 63 LAELDETLRAFGQHLHVYLENPDDLFCRLYQQ-------------YSVRRVHHSVNAGLY 109
Query: 157 --AKVSLVDGKPKICLWQTPFYDIKN-------LNDLPVSHNEFRKL----QRPLTSPIL 203
A S V + + L + + + N L DLP + ++FRKL +R L +P+L
Sbjct: 110 EKAFFSRVSQRSDVVLNASHSHTLFNPESLPFDLCDLPETFSKFRKLVEKEKRRLVAPML 169
Query: 204 PPT 206
PPT
Sbjct: 170 PPT 172
>gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3]
gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3]
Length = 482
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSNEMLE--LVIFALED 100
+ + V+WF+QDLR++D L AA++ Q V+P+Y+ D +S + +L
Sbjct: 2 TDTVVLWFRQDLRINDLPALQAATRDGQKVLPIYILDEDAPGDWSPGGASRWWLHHSLTA 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L + + G L+ R G+ +++R++ E A +++ E
Sbjct: 62 LAQDIDHLGGTLIFRKGKTLSILRDVCEASGARAIYCSRRYE 103
>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628269|ref|ZP_17604018.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401270133|gb|EJR76158.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
Length = 476
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+L L A + V+P+Y+ D + S L A+ D++K L+
Sbjct: 6 IVMFQKDFRLYDNLALFEAVQSGEVLPVYIQDETFSIGSASKWWLH---HAVIDVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E I L+E++ T+V+
Sbjct: 63 ALGSTLIIRKGRTEEEILSLIEQLDITAVY 92
>gi|335035151|ref|ZP_08528494.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
gi|333793582|gb|EGL64936.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
Length = 479
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
++ ++WF++DLR+ D+L L+AA ++ V+P+Y+ + + + +L L
Sbjct: 4 KTAPVIVWFRKDLRLSDNLALLAAVEHGGPVIPVYIRE-KSAGPLGGAQEWWLHHSLAAL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
SL++ G L++ G E ++R+L+ E A +V
Sbjct: 63 SSSLEKAGGRLVLASGDAERILRDLISETGADTV 96
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFD--HRILSRYSNEMLELVIFALEDLRKS 104
++WF++DLR+DD+ L AA + + V+P+Y+ + + +L L +S
Sbjct: 8 ILWFRKDLRLDDNAALATAADEGRRVIPVYIREPAEAGTGPLGAAQAWWLHHSLAALARS 67
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L+E GS L +R G V+ +L++E A SV+
Sbjct: 68 LEEIGSRLTLRSGPAGQVLDQLIDETGAASVY 99
>gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris]
gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris]
Length = 637
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLRV+D+ LVAA + VVPL+++ + R S L+ +L L
Sbjct: 5 IVWFRRDLRVEDNPALVAAVRAGTVVPLFIWTPEEEGQFLPGRVSRWWLKQ---SLIQLH 61
Query: 103 KSLKEQGSDLMIRFGRVE-NVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+SL GS L++R + +V+ +++++ AT VF HL +++V + K L
Sbjct: 62 QSLTSLGSPLIMRRAQSAISVLSQIIKQTGATQVFFN-----HLYDPVSLVRDHKVKQEL 116
Query: 162 VDGKPKICLWQTP-FYDIKNLND 183
+ + + Y+ +ND
Sbjct: 117 LQAGVTVTTFNADLLYEPWEIND 139
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 22 LRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPL---YVF 78
LR C + T ++ + W ++DLR+ DH L A Q+ +P+ +VF
Sbjct: 23 LRHPAFCFTVFMSISLPTPTIQTPHVLCWLRRDLRLQDHAALHHA--LQSGLPVACVFVF 80
Query: 79 DHRILSRYSNE--MLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
D IL + + ++ +L+ L++ L++ GS+L+ G I L + A +V+
Sbjct: 81 DSTILDSLPADDVRVAFILDSLQSLQEQLRQHGSELITVHGDPVQQIPLLANHLNAQTVY 140
Query: 137 AEEEVE 142
A E+ E
Sbjct: 141 ANEDYE 146
>gi|444425038|ref|ZP_21220486.1| deoxyribodipyrimidine photolyase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241648|gb|ELU53169.1| deoxyribodipyrimidine photolyase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 493
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DHL L A S V LY+F+ +L YS V +++D+
Sbjct: 6 LVWLKRDLRLTDHLPLQHALSSKNPTVLLYIFEPMLLDDPHYSERHWRFVWQSIQDMNAQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + + + FG + + + + +VF+ +E+
Sbjct: 66 LAQHDQKVSVMFGNARDCLSAIQNQFSIDAVFSHQEI 102
>gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
Length = 489
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAAS----------KYQAVVPLYVFDHRILSRYSNEMLELV 94
G + W ++DLR D+ GL AA+ V ++ FD +L+ + + +
Sbjct: 8 GMQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVAFM 67
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+ AL LR+ ++ GSDL++R G V+ + ++ AT V
Sbjct: 68 LDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRV 108
>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 476
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSMGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G E I LVE++ T+V+
Sbjct: 63 ALGSTLIIRKGSTEEEILSLVEQLGITAVY 92
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL A + + VV ++ FD IL R + + ++ L++L+++
Sbjct: 6 LFWHRKDLRISDNVGLAKARQESSKVVGIFCFDSNILERDDIAPARIAYLLGCLQELQQT 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ GS+L+ G ++I +L + A +VF +VE
Sbjct: 66 YQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVE 103
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+ GL AA + + VV ++ D ILS + + +I L+ L++
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQRD 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ GS L+I +R+L + A +V+ ++VE RQ V+E+L +V +
Sbjct: 66 YQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEVGI 122
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL A + ++ ++ D IL R + + ++ LE+L K+
Sbjct: 6 LFWHRRDLRLSDNIGLSKARDRSPKIIGVFCLDPAILERDDIAPARVAYLLGCLEELEKN 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
+++GS L+I G + L + A +VF ++E + RQ
Sbjct: 66 YRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQ 108
>gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
Length = 468
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSL 105
+ + W ++D R+ D+ LVAA + AVVPL++ D I + L + +E ++L
Sbjct: 2 TTIYWVRRDFRLSDNPALVAACERGAVVPLFICDEVIEGHGAAPKWRLGL-GVEAFAEAL 60
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSV 135
GS L++R G +R ++ +V A +V
Sbjct: 61 HAVGSKLILRRGDALPTLRAVIADVSANAV 90
>gi|167998494|ref|XP_001751953.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein
[Physcomitrella patens subsp. patens]
gi|162697051|gb|EDQ83388.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein
[Physcomitrella patens subsp. patens]
Length = 413
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDLRKSL 105
++WF++DLR++D+ L+AA++ VVP++V+ ++ + + +L L SL
Sbjct: 6 IVWFRRDLRLEDNPALIAAARAGTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLELSL 65
Query: 106 KEQGSDLMIRFGR-VENVIRELVEEVKATSVFA 137
K+ GS L++R R + +V+ E+ E AT VF+
Sbjct: 66 KKLGSPLILRRSRDMLSVLLEIAEAPGATQVFS 98
>gi|424032646|ref|ZP_17772063.1| cryptochrome-like protein cry2 [Vibrio cholerae HENC-01]
gi|408875704|gb|EKM14848.1| cryptochrome-like protein cry2 [Vibrio cholerae HENC-01]
Length = 493
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DHL L A S V LY+F+ +L YS V +L+D+
Sbjct: 6 LVWLKRDLRLTDHLPLQHALSSENPTVLLYIFEPMLLDEPHYSERHWRFVWQSLQDMDVQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + + + FG + + + + +VF+ +E+
Sbjct: 66 LAQHDQKVSVMFGNARDCLSAIQNQFNINAVFSHQEI 102
>gi|148238972|ref|YP_001224359.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
gi|147847511|emb|CAK23062.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
Length = 490
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR+ DH L A V+PLY+ + + S+ S +L+DL+++
Sbjct: 5 LVWFKRDLRLVDHQPLARALARGPVLPLYIVEPELWSQPDCSARQWAFCRESLQDLQQAC 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L+IR G +V+ ++ +++++ EE
Sbjct: 65 AALGQPLIIRSGDAVDVLERARCQLGVSALWSHEET 100
>gi|427407608|ref|ZP_18897810.1| hypothetical protein HMPREF9718_00284 [Sphingobium yanoikuyae ATCC
51230]
gi|425714112|gb|EKU77123.1| hypothetical protein HMPREF9718_00284 [Sphingobium yanoikuyae ATCC
51230]
Length = 458
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDLRKSL 105
+IWF+QDLR+ D L AA++ V+PLY+ D +++ + +L L + L
Sbjct: 6 IIWFRQDLRLSDQAALAAAAQAGPVIPLYILDDESPRQWAMGGASRWWLHHSLASLDERL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137
+GS L++R GR +V+ ++ EE A V A
Sbjct: 66 GTKGSRLILRRGRCADVLAQVAEESGAQVVHA 97
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFKATQSGEVVPVYVHDETFSMGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G E I L+E++ T+V+
Sbjct: 63 ALGSTLIIRKGSTEEEILSLIEQLGITAVY 92
>gi|300774220|ref|ZP_07084087.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300758899|gb|EFK55728.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 437
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVV-PLYVFDHRILSRYSNEMLELVIF---ALEDL 101
+ + WF++DLR+ D+ L A +A V P+++FD IL+R + V F L+ L
Sbjct: 6 TVIFWFRRDLRLQDNHALFRALNSEAAVQPVFIFDSTILTRLDDPADARVTFIYQQLQLL 65
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ LK GS + +G V E+ EE T+V+ + E
Sbjct: 66 QEQLKPYGSSIRTYYGEPATVWEEIYEEYTPTAVYVNSDYE 106
>gi|187931260|ref|YP_001891244.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712169|gb|ACD30466.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 499
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLRV D+L L AS+ ++ LY+ + + + S+ + LE+L L
Sbjct: 3 IVWFKRDLRVTDNLALSLASEKGDILQLYIIEPELWQQPDMSHRQYLFLSECLEELNTEL 62
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L I G + +L+++ +V++ +E
Sbjct: 63 TKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQET 98
>gi|399926990|ref|ZP_10784348.1| deoxyribodipyrimidine photo-lyase [Myroides injenensis M09-0166]
Length = 437
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAA--SKYQAVVPLYVFDHRILSRYS---NEMLELVIFALEDL 101
V WF++DLR+ D++G AA S Y+ V+P+++FD IL ++ + ++ + + +L
Sbjct: 8 VVYWFRRDLRLKDNVGFSAALQSGYK-VLPIFIFDVDILQAFTIKKDRRVDYIYQVIVEL 66
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
LK+ S + + EN L + V+ E+ E Q V++ LA
Sbjct: 67 DSFLKKYNSGIKVFHSTTENAFESLTNDYDVQGVYCNEDYESKALQRDKQVNDYLA 122
>gi|414167272|ref|ZP_11423501.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
gi|410891089|gb|EKS38887.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
Length = 488
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLEL-------VIFALE 99
++WF+ DLR+ DH L AA++ A +V LYV D S + + +L
Sbjct: 10 IVWFRDDLRLSDHPALHAAAETDAPLVLLYVLDEESTSLRPPRGRAIGSASRWWLAQSLR 69
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L+ SL +G L++R G VI +L ++++A SV
Sbjct: 70 SLQASLAARGQTLVLRSGAAARVISDLAQDIEAASV 105
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL A + ++ ++ D IL R + + ++ LE+L K+
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILERDDIAPARVAYLLGCLEELEKN 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
+++GS L+I G + L + A +VF ++E + RQ
Sbjct: 66 YRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQ 108
>gi|409405685|ref|ZP_11254147.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
gi|386434234|gb|EIJ47059.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
Length = 497
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 47 AVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSRYSNE------MLELVIFALE 99
+++WF++DLR DH L A S+ ++V ++VFD IL E ++ ++ ++
Sbjct: 7 SLVWFRRDLRHTDHAALYYALSQSRSVWCVFVFDTDILDALKAEGVVQDRRVDFLLASVA 66
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+L ++L++ G L++ G + I L E++ +VF + E + A V + L K
Sbjct: 67 ELDQALQKAGGGLIVLNGPAASCITNLAAELQVQAVFTNSDYEPAAVERDAAVAQALKK 125
>gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293557|ref|ZP_21483662.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445570418|gb|ELY24981.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 503
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 98/256 (38%), Gaps = 53/256 (20%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR-------------ILSRYSNEMLE 92
+++ WF++D R+ D+ AA VVP+Y D R +
Sbjct: 5 TSLAWFRRDHRLHDNAAFAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ +L DLR SL+++GSDL++R GR E+V+ E+ V A V ++
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPEVAAAVDADFVTVHTRPTPEESRV---- 120
Query: 153 DETLAKVSLVDGKPKI-CLWQTPFYDIKN----LNDLPVSHNEFRKL------------- 194
E+ + L DG ++ W + L+DLP ++ FRK
Sbjct: 121 -ESAVETELRDGGVELRRFWGHTLTHLDGLPMALSDLPDTYTTFRKAVELAAEDAGTGDA 179
Query: 195 --------------QRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESW 240
+ PL P +PP A D G LP +L + N + +
Sbjct: 180 AAGDEHASDGDPGGRDPLPEPTVPPLPDDAP---DAGDLPAVSDLVGTADANADRAPDDR 236
Query: 241 TLINNMSAETILTDKL 256
++ ET D++
Sbjct: 237 GVLPFDGGETAALDRV 252
>gi|170780895|ref|YP_001709227.1| deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
michiganensis subsp. sepedonicus]
Length = 508
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDH-----RILSRYSNEMLELVIFAL 98
G ++W + DLRV D+ + AA + + +V LYV D R L + L + +L
Sbjct: 22 GPTIVWLRDDLRVADNPAMHAAVERGEPIVVLYVLDEESAGIRPLGGAARWWLHM---SL 78
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L +SL+ GS L++R G+ +V+ +LV EV A +V
Sbjct: 79 SRLGESLRGLGSPLVLRRGKAADVVDDLVREVGAGAVL 116
>gi|291281640|ref|YP_003498458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
CB9615]
gi|387505751|ref|YP_006158007.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
RM12579]
gi|416814990|ref|ZP_11891700.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
3256-97]
gi|416825006|ref|ZP_11896295.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
5905]
gi|419118062|ref|ZP_13663061.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5A]
gi|419119196|ref|ZP_13664175.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5B]
gi|419124923|ref|ZP_13669823.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5C]
gi|419135172|ref|ZP_13679979.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC5E]
gi|425247236|ref|ZP_18640449.1| deoxyribodipyrimidine photolyase [Escherichia coli 5905]
gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
CB9615]
gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
5905]
gi|374357745|gb|AEZ39452.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
RM12579]
gi|377953948|gb|EHV17509.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5A]
gi|377971814|gb|EHV35167.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5B]
gi|377979980|gb|EHV43250.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5C]
gi|377987482|gb|EHV50668.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC5E]
gi|408173922|gb|EKI00920.1| deoxyribodipyrimidine photolyase [Escherichia coli 5905]
Length = 472
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
Length = 441
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRI-------LSRYSNEMLELVIFA 97
+ + WF DLRV D+ L+ AS ++ L+ +D ++ + ++ +
Sbjct: 4 TGLFWFNNDLRVHDNPALLEASLNCDRLICLFCYDTFWDKPTGFNAKPLGDKRRQFLLES 63
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L DL+ +L+ +G L++ G +I EL+ + V+ V + + +
Sbjct: 64 LNDLQHTLEARGQQLIVMKGDPVAIISELLSKYHVNHVYRSYHVGVYENRQWQHLRADFP 123
Query: 158 KVSLVDGKPKICLWQT---PFYDIKNLNDLPVSHNEFRKLQR--PLTSPI-LPPTLA--G 209
+V D L+Q PF +L LP + ++FRK+ P+ P+ +P TLA
Sbjct: 124 RVQF-DSYWTHSLFQQRQLPF----DLTSLPDTFSQFRKIVESLPIDKPVQMPKTLAVPV 178
Query: 210 AKLEADWGPLPTF 222
++L D PLPT+
Sbjct: 179 SELHEDTLPLPTY 191
>gi|395763919|ref|ZP_10444588.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium lividum PAMC
25724]
Length = 487
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDLR 102
+ ++WF++DLR DH L A + Q V ++V+D IL+ + ++ + +L +L
Sbjct: 5 TTLVWFRRDLRAFDHAALHHALRQSQTVHCVFVYDTAILAALPRRDRRVDFLHASLAELA 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L++ G DL++ I L E+ A +VFA + E
Sbjct: 65 AELRQLGGDLIVLHADAAEAIPRLAAELNADAVFANHDYE 104
>gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
Length = 472
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR+DD+ L+AA+ V+ L+V D + L + L DL + L +
Sbjct: 3 WLRRDLRLDDNPALIAAAGQGPVLALFVLDEALCRPAGPVRLAFLYRCLRDLDRRLAGR- 61
Query: 110 SDLMIRFGRVENVIRELVEEVKATSV-FAEEEVEYHLRQMMAIVDETLAKVSLVDGK 165
L +R G E V+ + E+ A V A + Y R+ DE +A+ L G+
Sbjct: 62 --LCVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRR-----DERVARALLAGGR 111
>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
Length = 488
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 26/184 (14%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA------VVPLYVFDHRILS-------RYSNEMLELV 94
V+WF+ DLR+ D+ + A V+PLYVFD R + +
Sbjct: 3 VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
+ ++ +L+++L+ GSDL++ G+ E VI + + + EEV ++ A V
Sbjct: 63 LESVLNLKRNLRAIGSDLLVAVGKPEEVIPKYLLDAPGAK---NEEVCSEELRVDAKVKS 119
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNL------NDLPVSHNEFRKLQRPLTSP--ILPPT 206
+ ++ KI W + Y +L +DLP FR + P +PP
Sbjct: 120 AVKSAGNLNRLDKI--WGSTLYHKDDLPFRSDASDLPDVFTPFRNKVESKSEPREPVPPP 177
Query: 207 LAGA 210
GA
Sbjct: 178 AKGA 181
>gi|456063902|ref|YP_007502872.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455441199|gb|AGG34137.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 505
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF--DHRILSRYSNEMLELVIFALEDLRKSL 105
+WFK+DLR DH L A + V YV D+ L SN V +L DL L
Sbjct: 5 AVWFKRDLRTFDHEALCRACESGPTVCFYVIEPDYWRLDNTSNRQWHFVRESLLDLSDQL 64
Query: 106 KEQGSDLMIRFGRVENVIRELVEE 129
K G+ L++ GRV + + L +E
Sbjct: 65 KVLGATLVVHQGRVIDFLETLYQE 88
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 51 FKQDLRVDDHLGLVAASKYQAVV-PLYVFDHRILS---RYSNEMLELVIFALEDLRKSLK 106
F++ LR+ D+ L+AA + VV P+Y+ D ++ ++ +LEDLR SL
Sbjct: 9 FRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLRSSLC 68
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ GS L++ G + V+R+ V++ T V + E+E ++M A +
Sbjct: 69 QLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANI 114
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+ GL AA + + VV ++ D ILS + + +I L+ L++
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQRD 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ GS L+I +R+L + A +V+ ++VE RQ V+E+L +V +
Sbjct: 66 YQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGI 122
>gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
Length = 447
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEM---LELVIFALEDLR 102
V WF++DLR+ D+ GL A K Q V+P+++FD IL ++ + + AL+ ++
Sbjct: 5 TVFWFRRDLRLHDNTGLYEALKNEQNVLPIFIFDRHILDDLEDKKDLRVAYIYAALQQIQ 64
Query: 103 KSLKEQ-GSDLMIRFGRVENVIRELV--------EEVKATSVFAEEEVEYHLRQMMAIVD 153
+SL + S L + + E V +L E + SV+ + E + RQ V
Sbjct: 65 QSLADDLQSSLKVYYDYPEQVFEQLTQAGITLNGETYQVKSVYTNHDYEPYARQRDEKVQ 124
Query: 154 ETLA 157
+ L+
Sbjct: 125 QILS 128
>gi|443310722|ref|ZP_21040364.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
gi|442779247|gb|ELR89498.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
Length = 476
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+ GL A ++ Q VV ++ D IL R + + ++ L+ L++
Sbjct: 6 LFWHRRDLRLSDNTGLAIAREHSQKVVGVFCLDPNILERDDVAPVRVTYMMGCLQHLQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAK 158
E GS+L+I G I L E + A VF +VE Y + A++D AK
Sbjct: 66 YTEVGSELLIIKGNPTQAIPALAEILNARGVFWNWDVEPYSQTRDRAVIDALQAK 120
>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
Length = 455
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI--LSRYSNEMLELVIFALEDLR 102
++++ + DLR+ DH L AA + + VVPL+V D I + ++ + L DL
Sbjct: 3 ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVGFHAANRAAFLADCLGDLD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
L+E+G L++R G V+RELV A V V + R
Sbjct: 63 AGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYAR 106
>gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 485
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
V+WFK+DLR+ DH L A S + + LY+ + ++ + Y + V +L+DL K
Sbjct: 3 VVWFKRDLRLHDHDALFKAISLGKPCLLLYILEPSLIEDTHYDDRHWRFVYESLQDLNKQ 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE------------VEYHLRQMMAIV 152
L G L + G +V++ + + + ++F+ +E +EY + +IV
Sbjct: 63 LSPYGHRLTVIKGEALDVLQAIHQRHEIHTIFSHQEIGIARTFSRDRKIEYWCKN-NSIV 121
Query: 153 DETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPL 198
+ ++V G WQ +Y+ + P+ N+ + Q L
Sbjct: 122 WQQSPHGAVVRGLQHRLYWQDHWYNYMARSIPPIELNKLKSEQSCL 167
>gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
Length = 503
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIF--------- 96
A++WF++DLR DH L A +++ V +VFD IL V F
Sbjct: 27 ALVWFRRDLRCVDHAALYHALREHERVYCAFVFDTDILDALPTRADRRVEFIHAAVVELD 86
Query: 97 -ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
ALE L + GS L++R GR + I L + + +V+ + E
Sbjct: 87 RALEALSREAGGSGSGLIVRHGRAQEAIPALAQALGVDAVYVNRDYE 133
>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
Length = 479
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL A ++ + VV ++ D IL R + + +I +L++L++
Sbjct: 6 LFWHRRDLRITDNIGLATARQHSSKVVGVFCLDPNILERDDVAPVRVTYMIGSLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+ GS L+I G I L E + A +VF +VE
Sbjct: 66 YVQAGSQLLILRGDPVQAIPHLAEALNAKAVFWNWDVE 103
>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|376267016|ref|YP_005119728.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|364512816|gb|AEW56215.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
Length = 476
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSIGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G E I L+E++ T+V+
Sbjct: 63 ALGSTLIIRKGSTEEEILSLIEQLGITAVY 92
>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
Length = 476
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSIGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G E I L+E++ T+V+
Sbjct: 63 ALGSTLIIRKGSTEEEILSLIEQLGITAVY 92
>gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Photobacterium angustum
S14]
gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Photobacterium angustum
S14]
Length = 491
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
V+W K+DLR+ DH L VAA+ V+ +Y+ + +LS YS + +LED+
Sbjct: 6 VVWLKRDLRLTDHQALSVAANNDYPVMLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNHQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L S + I G + +L+ ++F+ +E+
Sbjct: 66 LACVNSQVFIFHGNAVECLDKLMHHCPINALFSHQEI 102
>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
Length = 480
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLEL--VIFALEDLRKS 104
+ W ++DLR++D+LGL AA ++ VV L+ FD ILS + + ++ L+ L+++
Sbjct: 5 LFWHRRDLRLNDNLGLAAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQALQEA 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
+ G +I G ++ ++ + + A +V E+VE + R+
Sbjct: 65 YRRLGGSFLIFRGDPRQILPQVAKGLGAVAVHWHEDVEPYGRE 107
>gi|372487277|ref|YP_005026842.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
gi|359353830|gb|AEV25001.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
Length = 482
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRY---SNEMLELVIFALEDL 101
SA++WF++DLR DH L A K + V +VFD IL S+ +E + +L +L
Sbjct: 4 SALVWFRRDLRDYDHAALYHALKSARRVWCAFVFDSDILEALPGRSDRRVEFIRESLAEL 63
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L+ +G LM+R G I L ++ +VFA + E
Sbjct: 64 HVALQAKGGGLMVRHGPAAAEIAALARQLGVVAVFANRDYE 104
>gi|330752633|emb|CBL87577.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteriia
bacterium]
Length = 485
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
++W K+DLR DH AA SK +P+Y+FD+ ++ S+ L + +L D+ K
Sbjct: 8 IVWIKRDLRTLDHESFHAAESKNIPYLPVYIFDNDLIDYPDTSDRHLGFIYNSLIDINKK 67
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
L ++ I +G ++ + L+ + K ++F+ +E
Sbjct: 68 LSSFNKEVEILYGPSLDIFKYLITQFKIENIFSYQE 103
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 119/304 (39%), Gaps = 61/304 (20%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS--RYSNEMLELVIFALED 100
S AV+WF+ DLR+ D+ L AA++ A ++ LYV D R + + +L
Sbjct: 2 SAPAVVWFRNDLRLADNPALTAAARSGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTA 61
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE-YHLRQMMAIVDETLAKV 159
L L G L +R GR E V+ +V + A +V+ E + +R+ I + A+
Sbjct: 62 LAHDLARLGVTLTLRRGRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRARG 121
Query: 160 SLVD-----------------GKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPI 202
+V+ G+P TPF+ + P + L P
Sbjct: 122 VMVESFNGSLLFEPGGLRNKQGEPFRVF--TPFWRACLAAEAPDA-----PLPAPKKLTA 174
Query: 203 LPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKR 262
PP + A ADW LPT + L E+W + E ++L++ K+
Sbjct: 175 APPPASDAL--ADWRLLPTKPDWAG-------GLRETWR-----AGEHAALERLAEFAKK 220
Query: 263 SKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEK 322
R+ ++D+ F + ++ + +L + E + R W E+ E
Sbjct: 221 RVRDY--------KIDRDFMAREG-----------VSRMSPHLHFGEVSPRRIWAEITEA 261
Query: 323 LRNA 326
+A
Sbjct: 262 AGDA 265
>gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
Length = 455
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI--LSRYSNEMLELVIFALEDLR 102
++++ + DLR+ DH L AA + + VVPL+V D I + ++ + L DL
Sbjct: 3 ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVGFHAANRAAFLADCLGDLD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
L+E+G L++R G V+RELV A V V + R
Sbjct: 63 AGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYAR 106
>gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
photolyase subfamily [Dokdonia donghaensis MED134]
Length = 494
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 40 SKGRSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILS--RYSNEMLELVIF 96
SK +S V WFK+DLR+ D+ L A ++ + V+ LY+F+ +L YS +
Sbjct: 2 SKSKSHITVHWFKRDLRLQDNENLWQALQHSEPVILLYIFEPSLLDDEHYSERHFNFIKE 61
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+L+DL+ L+ + +++ G V V ++L + V++ E
Sbjct: 62 SLQDLQSRLENYDTKILVVQGEVIPVFKKLQQHYTIKRVYSHVET 106
>gi|434376106|ref|YP_006610750.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874663|gb|AFQ26830.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 51 FKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGS 110
F++D R+ D+ L A + V+P+YV D L +++ + A+ D++K L+ GS
Sbjct: 9 FQKDFRLYDNPALFEAVQSGEVLPVYVQDEDFLMGEASKWW--LHHAVIDVKKQLEALGS 66
Query: 111 DLMIRFGRVENVIRELVEEVKATSVF 136
L+IR GR E I L+E++ T+V+
Sbjct: 67 TLIIRKGRTEEEILSLIEQLDITAVY 92
>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 474
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDH-----RILSRYSNEMLELVIFALEDL 101
+++WF+QDLRV D+ L AA +VP+Y+FD R+ S L +L+ L
Sbjct: 6 SIMWFRQDLRVKDNPALNAACDMGKIVPIYIFDESAPDGRMPGGASKWWLH---HSLKSL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
K L L I G + +I +L+E A+S+F
Sbjct: 63 NKRLNGH---LQIFKGDPQTLIPKLMESFNASSIF 94
>gi|448448562|ref|ZP_21591293.1| deoxyribodipyrimidine photolyase [Halorubrum litoreum JCM 13561]
gi|445814578|gb|EMA64539.1| deoxyribodipyrimidine photolyase [Halorubrum litoreum JCM 13561]
Length = 518
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA------VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
+ W ++DLRV D++GL AA+ P++V D +L S+ + ++ L L
Sbjct: 3 LFWHRRDLRVADNVGLAAATGAGDDADRGPAAPVFVLDPDVLDHASDVRVRRLLDGLAAL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
R +E+GSDL++ G E+V+ L + + A V + R+ A V L V +
Sbjct: 63 RDDYRERGSDLLVARGDPESVLPRLADALDAERVVWNRDYSGLARERDAAVRRALDAVDV 122
Query: 162 V 162
Sbjct: 123 A 123
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 51 FKQDLRVDDHLGLVAASKYQAVV-PLYVFDHRILSRYS---NEMLELVIFALEDLRKSLK 106
F++ LR+ D+ LV A + VV P+Y+ D ++ S ++ + ++EDL +L+
Sbjct: 9 FRKGLRLHDNPTLVTALETSDVVYPVYILDRNFMTSSSVIGSKRWNFFLQSIEDLHCNLQ 68
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP 166
+ S L + G E V+RE VE+ T V + E+E + + + DE + + G
Sbjct: 69 KLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYYKGL----DERIRAMGQELGFE 124
Query: 167 KICLWQTPFYDIK-----NLNDLPVSHNEFRKLQRPLTSPILP 204
+ + YDIK N P+++ F ++ L +P P
Sbjct: 125 VVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGNPDKP 167
>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
Length = 499
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL-------------SRYSNEML 91
+ ++W ++DLR D+ L A K+ + V ++VFD IL ++ + +
Sbjct: 13 TGLVWLRRDLRNTDNAALYYALKHCERVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRI 72
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
E ++ AL +L ++L+ G L++ +G ++ +L +E+ +VFA + E +
Sbjct: 73 EFILAALGELDEALRADGGGLIVLYGNPAELVPKLADELGVDAVFANHDYEPVAIERDGT 132
Query: 152 VDETLAKVS 160
V E LA+
Sbjct: 133 VRERLAEAG 141
>gi|414162215|ref|ZP_11418462.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
gi|410879995|gb|EKS27835.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
Length = 485
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLEL-----VIFALEDL 101
++WF+ +LR+ DH LVAA + A+V LY+ D + N L + +L L
Sbjct: 9 IVWFRDNLRLSDHPALVAAREAGAALVCLYILDDTHTGKGGNRSLGAATQWWLASSLRAL 68
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF---AEEEVEYHLRQMMA------IV 152
LK++G L++R G ++ L ++ A +VF +E E Q A V
Sbjct: 69 DTDLKKRGQHLVLRKGDARAILPRLAKDTGALAVFWIDSEIPAEAARAQDTAEALHEIGV 128
Query: 153 DETLAKVSLVDGKPKICLWQ-------TPFYD-IKNLNDLPVSHNEFRKLQRPLTSPILP 204
+ ++ L+ P I + TPF+ +++ D P RK LP
Sbjct: 129 ETHISPSDLLASPPSIRNKEGNGLRVFTPFWKRVRSQGDPPRPLPAVRK---------LP 179
Query: 205 PTLAGAKLE--ADWGPLPTFDELKEFVNENPWKLEES 239
P +A K E DW PT + + E W ES
Sbjct: 180 PPVASVKSENLKDWKLEPTHPDWAGGLRET-WTPGES 215
>gi|410861788|ref|YP_006977022.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
gi|410819050|gb|AFV85667.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
Length = 474
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDH-----RILSRYSNEMLELVIFALEDL 101
+++WF+QDLRV D+ L AA +VP+Y+FD R+ S L +L+ L
Sbjct: 6 SIMWFRQDLRVKDNPALNAACDMGKIVPIYIFDESAPDGRMPGGASKWWLH---HSLKSL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
K L L I G + +I +L+E A+S+F
Sbjct: 63 NKRLNGH---LQIFKGDPQTLIPKLMESFNASSIF 94
>gi|319762589|ref|YP_004126526.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
gi|317117150|gb|ADU99638.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
Length = 491
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 40 SKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY---SNEMLELVI 95
+G + SA++W ++DLR DDH L A ++ V +VFD IL S+ +E +
Sbjct: 2 QQGATASALVWLRRDLRCDDHAALYHALRRFGRVYCAFVFDTDILDALPTRSDRRVEFIH 61
Query: 96 FALEDLRKSLKE-------QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ +L + L E G L++R G I L + V A + E
Sbjct: 62 ASVLELHQGLAELAARSGAPGGGLIVRHGPAPECIVRLARSLGVQEVLANRDYE 115
>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
Length = 474
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
+ W ++DLR+ D+ L AA + ++PLY+ D + + + L + LE K+L+
Sbjct: 8 IWWIRRDLRLRDNPALRAAQEAGGPIIPLYIHDAQEEALGAAPKFRLGL-GLERFAKTLE 66
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
E+GS L++R G V+RE++ E A V
Sbjct: 67 EKGSRLIVRRGDALEVLREVIAESGAGHVI 96
>gi|116075315|ref|ZP_01472575.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
gi|116067512|gb|EAU73266.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
Length = 507
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSL 105
++WFK+DLR D+ L+ A + V+PLY+ + + S E +LE LR+ L
Sbjct: 10 LVWFKRDLRTVDNRPLLEACAHGPVLPLYIVEPEYWRQPDASARQWEFCRESLEHLRREL 69
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
G L++R G V+ + ++++ EE
Sbjct: 70 AALGQPLVVRCGEAVTVLERARRSLGIAAIWSHEET 105
>gi|330824678|ref|YP_004387981.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
K601]
gi|329310050|gb|AEB84465.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
K601]
Length = 491
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 40 SKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY---SNEMLELVI 95
+G + SA++W ++DLR DDH L A ++ V +VFD IL S+ +E +
Sbjct: 2 QQGATASALVWLRRDLRCDDHAALYHALRRFGRVYCAFVFDTDILDALPTRSDRRVEFIH 61
Query: 96 FALEDLRKSLKE-------QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ +L + L E G L++R G I L + V A + E
Sbjct: 62 ASVLELHQGLAELAARSGAPGGGLIVRHGPAPECIVRLARSLGVQEVLANRDYE 115
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL A + ++ ++ D IL R + + ++ LE+L K+
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILERDDIAPARVAYLLGCLEELEKN 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQ 147
+++GS L+I G + L + A +VF ++E + RQ
Sbjct: 66 YRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQ 108
>gi|404424432|ref|ZP_11006013.1| deoxyribodipyrimidine photo-lyase [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403651393|gb|EJZ06529.1| deoxyribodipyrimidine photo-lyase [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 444
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR DH L+ A++ V+ YV D R+ + L + AL L +SL
Sbjct: 4 LLWFRRDLRCHDHPALLEAAQPDGEVLACYVLDPRLEASAGAPRLRYLYRALRALSESLD 63
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV---- 162
+ L++ GR E I L + ATSV ++ R+ V L + L
Sbjct: 64 GR---LLVTRGRPEERIPALARAISATSVHISQDYSPFGRRRDDTVQAALGETELCATGS 120
Query: 163 ------------DGKPKICLWQTPFY 176
DG P TPFY
Sbjct: 121 GYLVSPGRITKSDGAPYRVF--TPFY 144
>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
Length = 478
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
+ W ++DLR+ D+ L AA A V+P+++FD + + L + LE L + L+
Sbjct: 12 IWWIRRDLRLSDNAALTAAVDSGAPVLPVFIFDSQDEDLGAAPRFRLGL-GLEHLAQRLE 70
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
GS L++R G V+++L++E A +V + R ++ ETL
Sbjct: 71 RLGSRLILRRGSALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKETL 120
>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 472
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDLRKS 104
++WF++DLR+ D+ L A + + V+P+YVFD + + +L L +S
Sbjct: 8 IVWFRRDLRLADNPALSEALASGEPVLPVYVFDEEGEGDSPDGAASKWWLHHSLASLDES 67
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD-ETLAKVSLVD 163
LK GS L++ G ++ + EL E+ A +VF ++ R A+V+ +T K SLVD
Sbjct: 68 LKGLGSRLVLLRGSSKSALVELCREMGARAVF------WNRRYEPAVVERDTEIKKSLVD 121
>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
Length = 492
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRI--LSRYSNEMLELVIFALEDLR 102
++V WF++DLR+ D+ L+A+ P+YV D S+ S + LE L
Sbjct: 3 TSVHWFRKDLRLHDNPSLLASLDNCSTFFPIYVLDMESARASKISANRWNFLCECLEALD 62
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL--AKVS 160
+ L+ GS L + GR +V+ L E + E E E RQ ++ A V
Sbjct: 63 RQLRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAENANVQ 122
Query: 161 LVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILP 204
L+ + L+ T N LP++ +E K L P P
Sbjct: 123 LLQHNAHL-LYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPP 165
>gi|350563289|ref|ZP_08932111.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium aerophilum
AL3]
gi|349779153|gb|EGZ33500.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium aerophilum
AL3]
Length = 478
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
+IWF++DLR++DH + A + + + Y D ++ +N+ + +LE L++SLK
Sbjct: 4 LIWFQRDLRLNDHAPIHHALATEHSCLFAYFHDPQLTQGEANQAW--LAASLEKLQQSLK 61
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSV---FAEEEVEYHLRQMMAIVDETLAKVSLV 162
+G+DL+I G +N +++ + T V F + E Y L+Q V + L KV L
Sbjct: 62 SKGADLLISDGSFKNHFEDVLNRYQITEVLYHFEQGEPYYTLQQQALEVCKQL-KVKLT 119
>gi|434391947|ref|YP_007126894.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
gi|428263788|gb|AFZ29734.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
Length = 479
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLEL--VIFALEDLRKS 104
+ W ++DLR+ D+ GLVAA K Q VV ++ D IL R + + +I L+ L++
Sbjct: 6 LFWHRRDLRIADNTGLVAARKQSQKVVGVFCLDPNILERDDVAAVRVTYMIGCLQALQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
E GS L+I I L + A +VF +VE + ++ + E L
Sbjct: 66 YTEVGSQLLILHDNPTQAIPRLAAALNAQAVFWNWDVEPYSQERDRTIIEAL 117
>gi|330825562|ref|YP_004388865.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
K601]
gi|329310934|gb|AEB85349.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
K601]
Length = 487
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRY---SNEMLELVIFALE 99
+ +A++W ++DLR DDH L A +Y V +VFD IL + +E + +L
Sbjct: 2 ASTALVWLRRDLRCDDHAALYHALRRYPRVYCAFVFDTGILDELPSRQDRRVEFIHASLL 61
Query: 100 DLRKSLKE-------QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+L + L++ G L++R G I +L +E+ V A + E
Sbjct: 62 ELHQGLQQLAARSGAPGGGLIVRHGPALECIVQLAQELGVQEVLANRDYE 111
>gi|297565815|ref|YP_003684787.1| deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946]
gi|296850264|gb|ADH63279.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946]
Length = 435
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
++W + DLR DH L A++ +V L D IL S + LR++
Sbjct: 3 LVWHRADLRTHDHPALYQAAQSGPLVGLVNLDPHILEPTSPRRRAWFYANTQALREAYAR 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFA 137
+G L++R+G V+ ++V E+ VFA
Sbjct: 63 RGGTLLVRYGTPWEVLPQVVAELGVQRVFA 92
>gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23]
Length = 695
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 90/417 (21%), Positives = 155/417 (37%), Gaps = 95/417 (22%)
Query: 48 VIWFKQDLRVDD-----HLGLVAASKYQAVVPLYVFDHRILS------------------ 84
V ++DLRV D HL + + ++P+YVF + +
Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFPAQQVELSGFLKDGEQSPYPPARS 67
Query: 85 ------RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVK-----AT 133
R + A+ +L++SL+E GS L+IR G V++V LV E+K +
Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVFDHLVNELKDAVPCVS 127
Query: 134 SVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFY-------DIKNLNDLPV 186
SV+ EE + Q + +K + + LW+ Y ++N DLP
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSKRGI-----EFKLWKDEKYFVDDRDTGLENPADLPD 182
Query: 187 SHNEFRKLQRPLTS---PILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLI 243
+RK Q PL +LP A LP F + +
Sbjct: 183 VFTTYRKSQEPLREKPRKVLPRPAKSA--------LPAFPQEGSIPAQ------------ 222
Query: 244 NNMSAETILTD-KLSKLGKRSKRNLNN-QHSPRKRLDKSFFVTDKGNTVGGGTNAVLNAL 301
A L+ L L KR + + N +P KR + + TD GG T+
Sbjct: 223 ----AHPFLSPVSLEDLQKRLVKPVENIMDNPPKRPEDA---TDGHPFTGGETSGW---- 271
Query: 302 QAYLRYL-EGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFE 360
A LR+L + + +++ + L G ++ L LG ++ R +H E +K E
Sbjct: 272 -ARLRHLGKSSAMTSYKDTRNGLV------GVDYSLKLSGYLSLGCLTARQIHEELLKLE 324
Query: 361 KERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQ 417
+ + GY + W M L + + + +++R +G++
Sbjct: 325 DGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAK-----FGRKLFRLSGFR 376
>gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
Length = 469
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS-RYSNEMLELVIF-ALEDL 101
S AV+WF++D R DD+ L A+K ++++P+Y+ D S R + + I +L DL
Sbjct: 4 SQIAVVWFRKDFRTDDNPALFEATKIRSIIPVYIIDENNCSIRKPGKAARIWIAESLIDL 63
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
KSL L I G +++ L+ KA +++
Sbjct: 64 NKSLDHH---LKIYSGNTITILKTLLSRYKAEALY 95
>gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
gi|422378314|ref|ZP_16458537.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
gi|432470086|ref|ZP_19712139.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE206]
gi|432712376|ref|ZP_19947426.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE8]
gi|433076876|ref|ZP_20263440.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE131]
gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
gi|431000153|gb|ELD16227.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE206]
gi|431259327|gb|ELF51701.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE8]
gi|431600596|gb|ELI70264.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE131]
Length = 472
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E + T +F + E + R + TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERTLRNV 124
>gi|359477655|ref|XP_002285169.2| PREDICTED: cryptochrome-2-like [Vitis vinifera]
gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDLRKS 104
V+WF++DLRVDD+ L A+K +V+P++++ + ++ + + +L L++S
Sbjct: 7 TVVWFRRDLRVDDNPALATAAKEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMHLKQS 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
L+ G+DL++ + E+ I L+E + A + A + V HL +++V + K L++
Sbjct: 67 LRSLGADLLLI--KAESTIEALLECIHA--IGATKLVYNHLYDPISLVRDHSIKQKLME 121
>gi|432769548|ref|ZP_20003902.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE50]
gi|431317892|gb|ELG05662.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE50]
Length = 472
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F +++++ E + T +F + E + R A V++TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVEKTLRNV 124
>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
Length = 493
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI--LSRYSNEMLELVIF-ALEDLR 102
++ W ++DLR D++GL ASK ++++ +YV D ++ L+R ++E + +L +L+
Sbjct: 6 SIFWHRRDLRFGDNIGLFEASKNSKSLIGVYVLDPKLLDLNRTTSEAKNWFLGESLIELQ 65
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
K+ + +GS L+I G +I +L E V A ++ E +E + + E L+K
Sbjct: 66 KNWEIRGSRLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLSK 121
>gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M605]
gi|417661241|ref|ZP_12310822.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
gi|432396599|ref|ZP_19639385.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE25]
gi|432722229|ref|ZP_19957153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE17]
gi|432726771|ref|ZP_19961653.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE18]
gi|432740457|ref|ZP_19975179.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE23]
gi|432893435|ref|ZP_20105447.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE165]
gi|432989770|ref|ZP_20178437.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE217]
gi|433109992|ref|ZP_20295867.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE150]
gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M605]
gi|430917571|gb|ELC38615.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE25]
gi|431268028|gb|ELF59542.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE17]
gi|431275480|gb|ELF66509.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE18]
gi|431286586|gb|ELF77412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE23]
gi|431424415|gb|ELH06511.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE165]
gi|431498007|gb|ELH77223.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE217]
gi|431630927|gb|ELI99251.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE150]
Length = 472
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E + T +F + E + R V+ L V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERALRNV 124
>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
CB15]
gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
Length = 483
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 37 AATSKGRSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSR-YSNEMLELV 94
+ SK + ++WF++DLR+ D+ L AA + V+PLY+ D R L +
Sbjct: 7 SGDSKANLDAVIVWFRKDLRIADNPALRHAAQSGRPVIPLYILDETPGIRPMGGASLWWL 66
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+L+ L SL+ G+ L++R G V+ +L+ + A SV
Sbjct: 67 DKSLKSLAASLETLGTKLVLRKGVAAEVLDQLIAQSGARSV 107
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL A K +V L+ D IL R + + ++ L +L++S
Sbjct: 6 IFWHRRDLRLSDNIGLSKAYQKSSKLVGLFCLDPNILQRDDIAPARVNYMLGCLRNLQES 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
++ G L+I G+ +I E+ + +K V +VE + ++ V E L + +
Sbjct: 66 YQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKEALQEKGIT 123
>gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea subsp. diptera]
gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea subsp. diptera]
Length = 696
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDLRKSL 105
++WF++DLRV+D+ LVAA++ V+P++++ ++ + + +L L SL
Sbjct: 6 IVWFRRDLRVEDNPALVAAARAGIVIPVFIWSPEEDGQFHPGRVSRWWLKQSLIHLDSSL 65
Query: 106 KEQGSDLMIRFG-RVENVIRELVEEVKATSVF 136
K GS L++R V+ ++V++V AT VF
Sbjct: 66 KSLGSPLIMRKSPDTLTVLLDIVQQVGATQVF 97
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+ GL AA + VV ++ D IL R + + ++ L+ L++
Sbjct: 6 LFWHRRDLRIADNTGLAAAQRQSPKVVGVFCLDPDILERDDIAPARVTYMLGCLQALQER 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+ GS L+I G VI +L E +KA +VF +VE
Sbjct: 66 YIQAGSQLLILHGPPVVVIADLAEALKAKAVFWNWDVE 103
>gi|448341701|ref|ZP_21530658.1| DNA photolyase FAD-binding protein [Natrinema gari JCM 14663]
gi|445627115|gb|ELY80441.1| DNA photolyase FAD-binding protein [Natrinema gari JCM 14663]
Length = 463
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 50 WFKQDLRVDDHLGLVAASKYQ--AVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
W ++D R D+ GL AA V+P+YVFD + R V + LR ++
Sbjct: 5 WHRRDRRTADNRGLAAAVAAADGPVLPVYVFDPTVTDRLGARKRAFVDRTVRALRARYRD 64
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
GSDL++R G +V+ +L E V E R A VD L
Sbjct: 65 LGSDLLVRSGTAPDVLADLCNEYDIDRVVTTECYAPVRRDRTATVDAAL 113
>gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
Length = 486
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
V+WFK+DLR+ DH L A S + LY+F+ ++ YS + + +LE L+K
Sbjct: 3 VVWFKRDLRLHDHEALHEALSTSGKTLLLYIFEPSLMKDIHYSQRHFDFIKQSLEALQKE 62
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L++ + ++I G V ++L + + +++ +E
Sbjct: 63 LQKYHTQILIIQGEAVPVFQKLTQVISIREIYSHQET 99
>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
Length = 476
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEATQSGEVVPVYVHDETFSMGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G + I LVE++ T+V+
Sbjct: 63 ALGSTLIIRKGSTQEEILSLVEQLGITAVY 92
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 30 CCVSPTAAATSKG---RSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR 85
+ TA TSK + +++WF+ DLR+ D LVAA ++ + V+P+Y++
Sbjct: 15 ATIESTATTTSKSLDTMTHPSLVWFRHDLRLQDQPALVAAVARGEPVIPVYIWSPDEDGD 74
Query: 86 YSNEMLE--LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+ + +L L + L+E GS L+IR G + L+++ A +V+
Sbjct: 75 WPPGAASRWWLHHSLHQLNEQLEELGSRLIIRQGNALTELLSLIDDTGADAVY 127
>gi|356576533|ref|XP_003556385.1| PREDICTED: cryptochrome-2-like [Glycine max]
Length = 634
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDL 101
S ++WF++DLR++D+ L AA+K +V+P+Y++ + ++ + + +L L
Sbjct: 3 SNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAHL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+SLK GS L++ + + + LVE VKA + A + V HL +++V + K L
Sbjct: 63 DQSLKSLGSRLVLI--KTHSTVTALVECVKA--IQATKVVFNHLYDPVSLVRDHNIKEKL 118
Query: 162 VD 163
V+
Sbjct: 119 VE 120
>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
Length = 634
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDL 101
S ++WF++DLR++D+ L AA+K +V+P+Y++ + ++ + + +L L
Sbjct: 3 SNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAHL 62
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+SLK GS L++ + + + LVE VKA + A + V HL +++V + K L
Sbjct: 63 DQSLKSLGSRLVLI--KTHSTVTALVECVKA--IQATKVVFNHLYDPVSLVRDHNIKEKL 118
Query: 162 VD 163
V+
Sbjct: 119 VE 120
>gi|452207964|ref|YP_007488086.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
gi|452084064|emb|CCQ37397.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
Length = 466
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 5/179 (2%)
Query: 50 WFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQG 109
W ++DLR+ D+ GL A + V ++VFD +L + ++ A+ LR + +E+G
Sbjct: 5 WHRRDLRLADNRGLADAP--ERPVGVFVFDEAVLEHAGASRVAFLLDAVGALRAAYRERG 62
Query: 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169
S+L++R G +V+ L ++ A V + + VD+ L V K
Sbjct: 63 SELLVRAGDPASVVPNLAADLGAEFVSWNRDYSGLASERDERVDDALENVDATPQKFHDA 122
Query: 170 LWQTPFYDIKNLNDLPVSHNEFRK--LQRPLTSP-ILPPTLAGAKLEADWGPLPTFDEL 225
+ P N D F + R P +P T A L G +PT +L
Sbjct: 123 VCHEPGSITTNAGDPYSVFTYFGRKWRDREKDDPRRIPETAPAADLGVAPGAIPTLSDL 181
>gi|386618155|ref|YP_006137735.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|387828689|ref|YP_003348626.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|432420783|ref|ZP_19663339.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|432498919|ref|ZP_19740696.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|432557689|ref|ZP_19794379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|432693459|ref|ZP_19928671.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|432709505|ref|ZP_19944572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|432917851|ref|ZP_20122334.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|432925157|ref|ZP_20127248.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|432980177|ref|ZP_20168956.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|433095601|ref|ZP_20281813.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|433104810|ref|ZP_20290830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|333968656|gb|AEG35461.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|430947255|gb|ELC66962.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|431031820|gb|ELD44553.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|431094124|gb|ELD99774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|431236696|gb|ELF31901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|431251674|gb|ELF45681.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|431446725|gb|ELH27469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|431448629|gb|ELH29344.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|431494172|gb|ELH73762.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|431619115|gb|ELI88040.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|431634109|gb|ELJ02365.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
Length = 472
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E + T +F + E + R V+ L V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERALRNV 124
>gi|432405530|ref|ZP_19648252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE28]
gi|430932447|gb|ELC52870.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE28]
Length = 470
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E + T +F + E + R V+ L V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERALRNV 124
>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 476
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSMGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G + I LVE++ T+V+
Sbjct: 63 ALGSTLIIRKGSTQEKILSLVEQLGITAVY 92
>gi|434387598|ref|YP_007098209.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018588|gb|AFY94682.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 478
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 20/206 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYS--NEMLELVIFALEDLRKS 104
+ W ++DLRV D +GL A A V+ ++ FD IL+ S + ++ L+ L K
Sbjct: 6 LFWHRRDLRVSDSIGLAQACNTNARVIGVFCFDRAILTNDSVAPARVTYLVGCLQSLAKD 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDG 164
+ GS L+ G I L +KA +V+ ++E + + DE++A DG
Sbjct: 66 YRRAGSQLLFVEGNPVVKIPLLATTLKAQAVYWHLDIEPYSQTR----DESIATTLKSDG 121
Query: 165 KPKICLWQTPFY---DIKNLNDLPVS-HNEFRK--LQRPLTSPI---LPPTLAGAKLEAD 215
W + +I N P + + F + R +P+ LPP A D
Sbjct: 122 IEVHTNWDQLLHAPSEIITGNKQPYTVYTPFWRNWNSRSKPAPVEVKLPPCQLDATELTD 181
Query: 216 WGPLPTFD--ELKE--FVNENPWKLE 237
+PT D K+ F ENP KLE
Sbjct: 182 LAQVPTIDLPTAKDLGFTWENPLKLE 207
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 39 TSKGRSGSAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILSR--YSNEMLELVI 95
TS ++WF++DLR+DD+ L AA+ + ++P+Y+ + + R +
Sbjct: 3 TSTKEPNPILLWFRKDLRLDDNHALQSAATSSRPLIPVYIREPGVTERGPLGGAQEWWLH 62
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
++L L+ +L GS L++R G V+ +LV+E A +V
Sbjct: 63 YSLAALQIALDAVGSKLILRHGEALTVLEKLVKETGAEAV 102
>gi|357409762|ref|YP_004921498.1| deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
33331]
gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
33331]
Length = 459
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRK 103
A++ F DLR+ DH L AA + VVPL+V D + + + + L DL
Sbjct: 4 AIVLFTSDLRLHDHPPLHAALASSDEVVPLFVLDPGVEAAGFAAPNRRAFLADCLRDLDS 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L+++G L++R G V +R +V E +A V + + ++ + E L+ V
Sbjct: 64 GLRDRGGRLVVREGEVAEEVRRIVSETEAGVVHMAAGISGYAQRREERLREALSSVG 120
>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
Length = 476
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A + V+P+YV D + S L A+ D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYVQDEAFSMGEASKWWLH---HAVIDVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E I L+E++ T+V+
Sbjct: 63 ALGSTLIIRKGRTEEAILSLIEKLDITAVY 92
>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
A2012]
gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CDC 684]
gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A1055]
gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Kruger B]
gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Vollum]
gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Australia 94]
gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase [Bacillus anthracis str. Ames]
gi|386736907|ref|YP_006210088.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|421510721|ref|ZP_15957609.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|421636758|ref|ZP_16077356.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
gi|384386759|gb|AFH84420.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|401819244|gb|EJT18426.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|403395554|gb|EJY92792.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
Length = 476
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSMGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G + I LVE++ T+V+
Sbjct: 63 ALGSTLIIRKGSTQEEILSLVEQLGITAVY 92
>gi|374598111|ref|ZP_09671113.1| DNA photolyase FAD-binding [Myroides odoratus DSM 2801]
gi|423323552|ref|ZP_17301394.1| hypothetical protein HMPREF9716_00751 [Myroides odoratimimus CIP
103059]
gi|373909581|gb|EHQ41430.1| DNA photolyase FAD-binding [Myroides odoratus DSM 2801]
gi|404609317|gb|EKB08700.1| hypothetical protein HMPREF9716_00751 [Myroides odoratimimus CIP
103059]
Length = 434
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY---SNEMLELVIFALEDLRK 103
+ WF++D+R+ D++GL A + + V+P+++FD IL+++ + + + AL +
Sbjct: 6 IFWFRRDIRLHDNVGLYHAIQSGKKVLPIFIFDPAILAQFPAQEDRRIPYIYQALAQVDS 65
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L++ S ++ V +V ++L+E +V+ + E R+ A V +A+ ++
Sbjct: 66 HLQQLNSQVVCYHDHVLDVFKQLIETHAIAAVYTNADYEPAARKRDAAVQALVAEHAI 123
>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
Length = 476
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSMGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G + I LVE++ T+V+
Sbjct: 63 ALGSTLIIRKGSTQEEILSLVEQLGITAVY 92
>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 476
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L I D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFSMGSASKWWLHHAII---DVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G + I LVE++ T+V+
Sbjct: 63 ALGSTLIIRKGSTQEEILSLVEQLGITAVY 92
>gi|410626720|ref|ZP_11337473.1| deoxyribodipyrimidine photo-lyase [Glaciecola mesophila KMM 241]
gi|410153821|dbj|GAC24242.1| deoxyribodipyrimidine photo-lyase [Glaciecola mesophila KMM 241]
Length = 499
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
V+W K+DLR+ DH L AA++ VV +Y+F+ ++ S Y V ++ DL
Sbjct: 8 VVWLKRDLRLRDHQALFAAAQQPLPVVMMYLFEPSVISDSHYDVRHWRFVWQSIVDLNSQ 67
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + + +++ F V +L+E V++ +E+
Sbjct: 68 LADYNARIVVFFEEAHCVFAQLMERFHIAGVYSHQEI 104
>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 477
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEM------LELVIFALED 100
+ W ++DLR+ D+LGL AA+ AV +YV D +++S + + L +I +L +
Sbjct: 7 LFWHRRDLRLTDNLGLAAAAAISPAVTGVYVLDPQVISPSEHLLPMAPARLWFLIESLIE 66
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
L++ ++ GS L++ G ++ +L E + A +V +VE + R+ D +A+
Sbjct: 67 LQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNRDVEPYARER----DRQVAQRL 122
Query: 161 LVDGKPKICLW 171
DG+ + W
Sbjct: 123 QADGRKVVVDW 133
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 32 VSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM 90
++PT A S + ++WF++DLR+ D+ L AA + + VV +Y+ D +++
Sbjct: 1 MNPTRYAMSN--ASPTLLWFRRDLRLADNPALTAAVRRGRPVVAVYILDDEDAGDWASGG 58
Query: 91 LE--LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
+ +LE L +SL+ +GS L++R G V+ L+ E A +V+
Sbjct: 59 ASRWWLHHSLERLAESLRGRGSRLILRRGAAAAVLDRLISETGAEAVY 106
>gi|414342179|ref|YP_006983700.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
gi|411027514|gb|AFW00769.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
Length = 502
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
Query: 39 TSKGRSGSA---VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRI--LSRYSNEMLE 92
+++G SA ++WF++DLR DH L AA+ ++ +YV D L
Sbjct: 21 SAQGHQTSASPVIVWFREDLRFSDHPALQAATATGHPLICVYVLDDETPALHALGGASRW 80
Query: 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ AL DLR +L L+ G E +I +L +E A V+ + R+
Sbjct: 81 WLHGALSDLRSTLSRHHGTLLTLKGSAEKLIPQLAKETDAQGVYWHHRLHQKEREQ---- 136
Query: 153 DETLAKVSLVDGKPKICLWQTPFYD 177
DE +A G W T D
Sbjct: 137 DEQIASALDKQGVSSEASWGTVLLD 161
>gi|404444701|ref|ZP_11009854.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vaccae ATCC 25954]
gi|403653381|gb|EJZ08370.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vaccae ATCC 25954]
Length = 447
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 25/152 (16%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQA----VVPLYVFDHRILSRYSNEMLELVIFALEDL 101
+AV+W ++DLR+ D L AA+ V+ YV D R+ + L+ + AL D+
Sbjct: 2 TAVLWLRRDLRLADLPALRAAADTDGTGTEVLACYVLDPRLRASSGPRRLQYLYDALRDV 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+SL + L++ G + I L E V A+SV ++ R+ V L V L
Sbjct: 62 HRSLDGR---LLVTEGDPRHRIPALAEAVGASSVHVSDDFTPFSRRRDEQVRAALGDVEL 118
Query: 162 V----------------DGKPKICLWQTPFYD 177
V DG P TPF+D
Sbjct: 119 VATGSPYLVSPGRVTKSDGTPYKVF--TPFFD 148
>gi|409408986|ref|ZP_11257421.1| deoxyribodipyrimidine photo-lyase [Herbaspirillum sp. GW103]
gi|386432308|gb|EIJ45136.1| deoxyribodipyrimidine photo-lyase [Herbaspirillum sp. GW103]
Length = 488
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNE--MLELVIFALEDLRKS 104
++WFK+DLR+ DH L A++ + +++ + L + ++ ++ +L L++
Sbjct: 4 GLVWFKRDLRLRDHAALAEAAQCERAFAVFIIEPAWLQSVECDPRHVDFLLRSLAPLQRE 63
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L+ G L++R G V+ L T +F+ EE
Sbjct: 64 LQRCGLPLLVRVGEAVQVLESLRRAWGVTHLFSHEET 100
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILSRYSN-EMLELVIFALEDLRK 103
+ + WF++ LR+ D+ GL+AA + + + P+++ D ++ ++ +I AL+DL
Sbjct: 4 TCIHWFRKGLRLHDNPGLMAALRDCKELYPVFILDPQLHNKSVGVNRCRFLIGALKDLDL 63
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
SL++ + L + G+ E V +L + K T + EY + D+T+ +++
Sbjct: 64 SLRQLNTRLFVVRGKPEEVFPKLFCQWKITKLT----YEYDTEPLSLSRDKTVTRLAEEH 119
Query: 164 GKPKICLWQTPFYDI-----KNLNDLPVSHNEFRKL-------QRPLTSPIL 203
G +C +DI +N P+++ + + +RPL++P +
Sbjct: 120 GIDVVCKVSHTLFDINRIIEENNGKTPLTYKSMQAIVKKLGPPKRPLSAPSM 171
>gi|331662061|ref|ZP_08362984.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
gi|417585498|ref|ZP_12236275.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_C165-02]
gi|422330964|ref|ZP_16411981.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4_1_47FAA]
gi|432960190|ref|ZP_20150396.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE202]
gi|433061943|ref|ZP_20248901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE125]
gi|331060483|gb|EGI32447.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
gi|345341015|gb|EGW73431.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_C165-02]
gi|373248213|gb|EHP67645.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4_1_47FAA]
gi|431478299|gb|ELH58048.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE202]
gi|431587344|gb|ELI58721.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE125]
Length = 472
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F +++++ E + T +F + E + R A V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERTLRNV 124
>gi|40063354|gb|AAR38165.1| deoxyribodipyrimidine photolyase family protein [uncultured marine
bacterium 580]
Length = 478
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRIL--SRYSNEMLELVIFALE 99
+ + ++W K+DLR+ DH L A+ + + + LY+++ ++ S + +L
Sbjct: 2 KPKTNIVWLKRDLRLTDHAPLYEATCRDEQFLVLYIYEPSLINDSHTDERHWRFIQQSLS 61
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ K L +Q L I +G + + E++ + + T+VF+ EE
Sbjct: 62 VMEKILAKQSKQLSIAYGEADQIFSEIINQHEITNVFSHEET 103
>gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera]
Length = 641
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDLRKS 104
V+WF++DLRVDD+ L A+K +V+P++++ + ++ + + +L L++S
Sbjct: 7 TVVWFRRDLRVDDNPALATAAKEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMHLKQS 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
L+ G+DL++ + E+ I L+E + A + A + V HL +++V + K L++
Sbjct: 67 LRSLGADLLLI--KAESTIEALLECIHA--IGATKLVYNHLYDPISLVRDHSIKQKLME 121
>gi|407069369|ref|ZP_11100207.1| deoxyribodipyrimidine photolyase [Vibrio cyclitrophicus ZF14]
Length = 492
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DH L A S+ V LY+F+ +L + YS + +L+ + S
Sbjct: 6 IVWLKRDLRLTDHEPLQQALSEQHPTVLLYIFEPMLLDNAHYSERHWRFIWQSLQCMNLS 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L E G + I +G + + +VF+ +EV
Sbjct: 66 LSEHGHQVSILYGNAIDCFEAVQSRYHIQNVFSHQEV 102
>gi|428208935|ref|YP_007093288.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
gi|428010856|gb|AFY89419.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
Length = 477
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+ GL AA + Q VV ++ D IL R + + +I L+ L++
Sbjct: 6 LFWHRRDLRISDNTGLAAARQRTQKVVGVFCLDPNILERDDVAPVRVTYMIGCLQQLQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ GS L+I G I L + A +VF +VE + + V ETL + +
Sbjct: 66 YAQVGSQLLILQGEPREAIPALATALSAKAVFWNWDVEPYSQVRDRTVIETLKEKGI 122
>gi|432542043|ref|ZP_19778901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE236]
gi|432547387|ref|ZP_19784181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE237]
gi|432620773|ref|ZP_19856816.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE76]
gi|432814235|ref|ZP_20048026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE115]
gi|431077087|gb|ELD84355.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE236]
gi|431084733|gb|ELD90860.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE237]
gi|431162186|gb|ELE62641.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE76]
gi|431367248|gb|ELG53732.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE115]
Length = 472
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA + + V+ LY+ R + + S E + L LR
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAEFINAQLNGLRI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|425298869|ref|ZP_18688918.1| DNA photolyase [Escherichia coli 07798]
gi|408221285|gb|EKI45239.1| DNA photolyase [Escherichia coli 07798]
Length = 472
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L EQG L+ R F ++++ E + T +F + E + R + TL V
Sbjct: 65 ALAEQGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTLRNV 124
>gi|410694724|ref|YP_003625346.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
Length = 497
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPL-YVFDHRILSRY------SNEMLELVIFALED 100
++W ++DLR+ D+ L AA + V L +VFD IL ++ +E ++ A+ +
Sbjct: 21 LVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDPLLQRGLQADRRVEFILAAVAE 80
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
+ +L+E G+ L++R I L E+ A +VF + E
Sbjct: 81 IDAALREHGAALIVRHASAREAIPALAAELGAQTVFCGRDDE 122
>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
Length = 504
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 19/135 (14%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--------------SRYSNEM 90
+ ++WF++DLR D+ L A ++ + V +VFD IL + +
Sbjct: 13 NGLVWFRRDLRTGDNAALYYALRHCERVWCAFVFDTTILQPLINWAHRRNAHAGKVQDAR 72
Query: 91 LELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMA 150
+E ++ ++E+L +SL+E G L++ G + I +L ++ +VF + E +
Sbjct: 73 IEFILASVEELDRSLEEGGGALIVLHGDPVDAIPKLAAQLPVDAVFTNHDYEPSAIER-- 130
Query: 151 IVDETLAKVSLVDGK 165
DET+A DG+
Sbjct: 131 --DETVADRLRADGR 143
>gi|419079052|ref|ZP_13624534.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4A]
gi|377933159|gb|EHU97004.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4A]
Length = 472
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + ++ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
Length = 481
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 37 AATSKGRSGSAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSR-YSNEMLELV 94
+ S+ G+ ++WF++DLR+ D+ L AA + VV LY+ D R L +
Sbjct: 5 SGDSEASPGAVIVWFRKDLRIADNPALRHAADSGRPVVCLYILDETPGVRPMGAASLWWL 64
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+L+ L + L++ G+ L++R G +V+ L+ E AT V
Sbjct: 65 DKSLKSLAQELEKLGNRLVLRKGVAADVLDALIAETGATGV 105
>gi|220905687|ref|YP_002480998.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
Length = 475
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA + A VV ++ D +L R + + +I +L+ L++
Sbjct: 6 LFWHRRDLRIADNVGLAAARQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQHLQQQ 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ GS L+I + I +L ++A +VF +VE + ++ V L V +
Sbjct: 66 YVQSGSQLLILHQQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETVGI 122
>gi|450186352|ref|ZP_21889437.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli SEPT362]
gi|449324455|gb|EMD14387.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli SEPT362]
Length = 472
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ--AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA + +V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSASVLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
Sakai]
gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4113]
gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4401]
gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4501]
gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4486]
gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4196]
gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4076]
gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC869]
gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC508]
gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4024]
gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4206]
gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4045]
gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4042]
gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4115]
gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14588]
gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14359]
gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli O157:H7 str. FRIK2000]
gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli O157:H7 str. FRIK966]
gi|387881268|ref|YP_006311570.1| deoxyribodipyrimidine photolyase [Escherichia coli Xuzhou21]
gi|416312802|ref|ZP_11657823.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1044]
gi|416317057|ref|ZP_11660189.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC1212]
gi|416325373|ref|ZP_11665781.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1125]
gi|416781458|ref|ZP_11877237.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
G5101]
gi|416792666|ref|ZP_11882132.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
493-89]
gi|416803982|ref|ZP_11887003.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
2687]
gi|416835836|ref|ZP_11901566.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
LSU-61]
gi|419043757|ref|ZP_13590730.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3A]
gi|419049304|ref|ZP_13596221.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3B]
gi|419055364|ref|ZP_13602219.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3C]
gi|419060961|ref|ZP_13607743.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3D]
gi|419078113|ref|ZP_13623608.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3F]
gi|419084678|ref|ZP_13630091.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4B]
gi|419090818|ref|ZP_13636136.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4C]
gi|419096358|ref|ZP_13641602.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4D]
gi|419102440|ref|ZP_13647606.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4E]
gi|419107789|ref|ZP_13652899.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4F]
gi|420270230|ref|ZP_14772589.1| deoxyribodipyrimidine photolyase [Escherichia coli PA22]
gi|420273757|ref|ZP_14776090.1| deoxyribodipyrimidine photolyase [Escherichia coli PA40]
gi|420279041|ref|ZP_14781307.1| deoxyribodipyrimidine photolyase [Escherichia coli TW06591]
gi|420285211|ref|ZP_14787428.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10246]
gi|420290839|ref|ZP_14793003.1| deoxyribodipyrimidine photolyase [Escherichia coli TW11039]
gi|420297852|ref|ZP_14799919.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09109]
gi|420302634|ref|ZP_14804663.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10119]
gi|420308158|ref|ZP_14810130.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1738]
gi|420313713|ref|ZP_14815619.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1734]
gi|421810938|ref|ZP_16246740.1| deoxyribodipyrimidine photolyase [Escherichia coli 8.0416]
gi|421817014|ref|ZP_16252572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0821]
gi|421822407|ref|ZP_16257844.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK920]
gi|421829140|ref|ZP_16264468.1| deoxyribodipyrimidine photolyase [Escherichia coli PA7]
gi|423659310|ref|ZP_17634564.1| deoxyribodipyrimidine photolyase [Escherichia coli PA31]
gi|424075572|ref|ZP_17812926.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA505]
gi|424081905|ref|ZP_17818770.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA517]
gi|424088530|ref|ZP_17824793.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1996]
gi|424094747|ref|ZP_17830506.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1985]
gi|424101154|ref|ZP_17836320.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1990]
gi|424107958|ref|ZP_17842543.1| deoxyribodipyrimidine photolyase [Escherichia coli 93-001]
gi|424113948|ref|ZP_17848107.1| deoxyribodipyrimidine photolyase [Escherichia coli PA3]
gi|424120006|ref|ZP_17853725.1| deoxyribodipyrimidine photolyase [Escherichia coli PA5]
gi|424126260|ref|ZP_17859469.1| deoxyribodipyrimidine photolyase [Escherichia coli PA9]
gi|424132359|ref|ZP_17865167.1| deoxyribodipyrimidine photolyase [Escherichia coli PA10]
gi|424138901|ref|ZP_17871203.1| deoxyribodipyrimidine photolyase [Escherichia coli PA14]
gi|424145340|ref|ZP_17877118.1| deoxyribodipyrimidine photolyase [Escherichia coli PA15]
gi|424151479|ref|ZP_17882741.1| deoxyribodipyrimidine photolyase [Escherichia coli PA24]
gi|424185264|ref|ZP_17888180.1| deoxyribodipyrimidine photolyase [Escherichia coli PA25]
gi|424423724|ref|ZP_17899811.1| deoxyribodipyrimidine photolyase [Escherichia coli PA32]
gi|424453886|ref|ZP_17905431.1| deoxyribodipyrimidine photolyase [Escherichia coli PA33]
gi|424460197|ref|ZP_17911134.1| deoxyribodipyrimidine photolyase [Escherichia coli PA39]
gi|424466669|ref|ZP_17916865.1| deoxyribodipyrimidine photolyase [Escherichia coli PA41]
gi|424473225|ref|ZP_17922908.1| deoxyribodipyrimidine photolyase [Escherichia coli PA42]
gi|424479171|ref|ZP_17928423.1| deoxyribodipyrimidine photolyase [Escherichia coli TW07945]
gi|424485237|ref|ZP_17934109.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09098]
gi|424491394|ref|ZP_17939768.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09195]
gi|424498450|ref|ZP_17945732.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4203]
gi|424504677|ref|ZP_17951463.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4196]
gi|424510946|ref|ZP_17957179.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14313]
gi|424518509|ref|ZP_17962941.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14301]
gi|424524335|ref|ZP_17968366.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4421]
gi|424530536|ref|ZP_17974172.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4422]
gi|424536510|ref|ZP_17979782.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4013]
gi|424542426|ref|ZP_17985249.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4402]
gi|424548745|ref|ZP_17990959.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4439]
gi|424555007|ref|ZP_17996733.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4436]
gi|424561355|ref|ZP_18002650.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4437]
gi|424567386|ref|ZP_18008309.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4448]
gi|424573572|ref|ZP_18014004.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1845]
gi|425096200|ref|ZP_18499231.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4870]
gi|425102344|ref|ZP_18504996.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.2239]
gi|425108136|ref|ZP_18510394.1| deoxyribodipyrimidine photolyase [Escherichia coli 6.0172]
gi|425123965|ref|ZP_18525550.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0586]
gi|425130005|ref|ZP_18531111.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.2524]
gi|425136345|ref|ZP_18537076.1| deoxyribodipyrimidine photolyase [Escherichia coli 10.0833]
gi|425142243|ref|ZP_18542538.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0869]
gi|425148557|ref|ZP_18548459.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.0221]
gi|425154175|ref|ZP_18553730.1| deoxyribodipyrimidine photolyase [Escherichia coli PA34]
gi|425160625|ref|ZP_18559805.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA506]
gi|425166140|ref|ZP_18564956.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA507]
gi|425172426|ref|ZP_18570830.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA504]
gi|425178315|ref|ZP_18576375.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1999]
gi|425184457|ref|ZP_18582089.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1997]
gi|425191217|ref|ZP_18588351.1| deoxyribodipyrimidine photolyase [Escherichia coli NE1487]
gi|425197543|ref|ZP_18594197.1| deoxyribodipyrimidine photolyase [Escherichia coli NE037]
gi|425204202|ref|ZP_18600336.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK2001]
gi|425209954|ref|ZP_18605695.1| deoxyribodipyrimidine photolyase [Escherichia coli PA4]
gi|425215999|ref|ZP_18611324.1| deoxyribodipyrimidine photolyase [Escherichia coli PA23]
gi|425222574|ref|ZP_18617438.1| deoxyribodipyrimidine photolyase [Escherichia coli PA49]
gi|425228813|ref|ZP_18623215.1| deoxyribodipyrimidine photolyase [Escherichia coli PA45]
gi|425235115|ref|ZP_18629081.1| deoxyribodipyrimidine photolyase [Escherichia coli TT12B]
gi|425241116|ref|ZP_18634756.1| deoxyribodipyrimidine photolyase [Escherichia coli MA6]
gi|425252966|ref|ZP_18645848.1| deoxyribodipyrimidine photolyase [Escherichia coli CB7326]
gi|425259282|ref|ZP_18651650.1| deoxyribodipyrimidine photolyase [Escherichia coli EC96038]
gi|425265382|ref|ZP_18657308.1| deoxyribodipyrimidine photolyase [Escherichia coli 5412]
gi|425292839|ref|ZP_18683422.1| deoxyribodipyrimidine photolyase [Escherichia coli PA38]
gi|425309567|ref|ZP_18699037.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1735]
gi|425315490|ref|ZP_18704570.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1736]
gi|425321554|ref|ZP_18710228.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1737]
gi|425327745|ref|ZP_18715969.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1846]
gi|425333927|ref|ZP_18721651.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1847]
gi|425340342|ref|ZP_18727588.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1848]
gi|425346216|ref|ZP_18733021.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1849]
gi|425352442|ref|ZP_18738826.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1850]
gi|425358435|ref|ZP_18744411.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1856]
gi|425364539|ref|ZP_18750090.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1862]
gi|425409124|ref|ZP_18791280.1| deoxyribodipyrimidine photolyase [Escherichia coli NE098]
gi|425415404|ref|ZP_18797044.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK523]
gi|425426543|ref|ZP_18807595.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1304]
gi|428945224|ref|ZP_19017861.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1467]
gi|428951371|ref|ZP_19023495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1042]
gi|428957226|ref|ZP_19028913.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 89.0511]
gi|428963540|ref|ZP_19034726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0091]
gi|428969740|ref|ZP_19040370.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0039]
gi|428976192|ref|ZP_19046361.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.2281]
gi|428981910|ref|ZP_19051641.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0055]
gi|428988151|ref|ZP_19057441.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0056]
gi|428993967|ref|ZP_19062873.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 94.0618]
gi|429000080|ref|ZP_19068584.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0183]
gi|429006325|ref|ZP_19074229.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.1288]
gi|429012647|ref|ZP_19079899.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0943]
gi|429018852|ref|ZP_19085631.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0428]
gi|429024543|ref|ZP_19090950.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0427]
gi|429030863|ref|ZP_19096737.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0939]
gi|429037051|ref|ZP_19102486.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0932]
gi|429043012|ref|ZP_19108012.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0107]
gi|429048748|ref|ZP_19113404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0003]
gi|429054121|ref|ZP_19118608.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.1742]
gi|429059797|ref|ZP_19123938.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0007]
gi|429065272|ref|ZP_19129129.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0672]
gi|429071832|ref|ZP_19135183.1| deoxyribodipyrimidine photolyase [Escherichia coli 99.0678]
gi|429077146|ref|ZP_19140359.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0713]
gi|429824343|ref|ZP_19355835.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0109]
gi|429830698|ref|ZP_19361544.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0010]
gi|444923046|ref|ZP_21242751.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 09BKT078844]
gi|444945857|ref|ZP_21264273.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0839]
gi|444951417|ref|ZP_21269637.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0848]
gi|444956868|ref|ZP_21274863.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1753]
gi|444962196|ref|ZP_21279943.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1775]
gi|444967901|ref|ZP_21285373.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1793]
gi|444973403|ref|ZP_21290680.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1805]
gi|444978951|ref|ZP_21295941.1| deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 700728]
gi|444984241|ref|ZP_21301106.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA11]
gi|444989485|ref|ZP_21306221.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA19]
gi|445000337|ref|ZP_21316795.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA2]
gi|445005798|ref|ZP_21322133.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA47]
gi|445010966|ref|ZP_21327153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA48]
gi|445016739|ref|ZP_21332784.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA8]
gi|445022192|ref|ZP_21338110.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 7.1982]
gi|445027438|ref|ZP_21343211.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1781]
gi|445032933|ref|ZP_21348552.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1762]
gi|445038627|ref|ZP_21354093.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA35]
gi|445043927|ref|ZP_21359260.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4880]
gi|445049413|ref|ZP_21364575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0083]
gi|445055067|ref|ZP_21370013.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0670]
gi|452969668|ref|ZP_21967895.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4009]
gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
Sakai]
gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4196]
gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4113]
gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4076]
gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4401]
gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4486]
gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4501]
gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC869]
gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC508]
gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4206]
gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4045]
gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4042]
gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4115]
gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14588]
gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O157:H7 str. TW14359]
gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC1212]
gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
G5101]
gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
493-89]
gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
2687]
gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
LSU-61]
gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1044]
gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1125]
gi|377900039|gb|EHU64377.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3A]
gi|377902128|gb|EHU66437.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3B]
gi|377913477|gb|EHU77614.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3C]
gi|377916866|gb|EHU80940.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3F]
gi|377917735|gb|EHU81792.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3D]
gi|377938892|gb|EHV02651.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4B]
gi|377949388|gb|EHV13024.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4C]
gi|377951258|gb|EHV14877.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4D]
gi|377954261|gb|EHV17821.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4E]
gi|377967660|gb|EHV31066.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4F]
gi|386794726|gb|AFJ27760.1| deoxyribodipyrimidine photolyase [Escherichia coli Xuzhou21]
gi|390650400|gb|EIN28816.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1996]
gi|390652366|gb|EIN30586.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA517]
gi|390652802|gb|EIN30980.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA505]
gi|390669428|gb|EIN46068.1| deoxyribodipyrimidine photolyase [Escherichia coli 93-001]
gi|390672462|gb|EIN48761.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1990]
gi|390673091|gb|EIN49343.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1985]
gi|390688326|gb|EIN63401.1| deoxyribodipyrimidine photolyase [Escherichia coli PA3]
gi|390691579|gb|EIN66315.1| deoxyribodipyrimidine photolyase [Escherichia coli PA9]
gi|390692544|gb|EIN67221.1| deoxyribodipyrimidine photolyase [Escherichia coli PA5]
gi|390708082|gb|EIN81362.1| deoxyribodipyrimidine photolyase [Escherichia coli PA10]
gi|390709811|gb|EIN82866.1| deoxyribodipyrimidine photolyase [Escherichia coli PA15]
gi|390711563|gb|EIN84534.1| deoxyribodipyrimidine photolyase [Escherichia coli PA14]
gi|390714442|gb|EIN87347.1| deoxyribodipyrimidine photolyase [Escherichia coli PA22]
gi|390733044|gb|EIO04640.1| deoxyribodipyrimidine photolyase [Escherichia coli PA25]
gi|390733125|gb|EIO04719.1| deoxyribodipyrimidine photolyase [Escherichia coli PA24]
gi|390751665|gb|EIO21552.1| deoxyribodipyrimidine photolyase [Escherichia coli PA31]
gi|390751942|gb|EIO21806.1| deoxyribodipyrimidine photolyase [Escherichia coli PA32]
gi|390754526|gb|EIO24104.1| deoxyribodipyrimidine photolyase [Escherichia coli PA33]
gi|390762675|gb|EIO31933.1| deoxyribodipyrimidine photolyase [Escherichia coli PA40]
gi|390775785|gb|EIO43782.1| deoxyribodipyrimidine photolyase [Escherichia coli PA41]
gi|390777658|gb|EIO45445.1| deoxyribodipyrimidine photolyase [Escherichia coli PA42]
gi|390782901|gb|EIO50534.1| deoxyribodipyrimidine photolyase [Escherichia coli PA39]
gi|390785277|gb|EIO52828.1| deoxyribodipyrimidine photolyase [Escherichia coli TW06591]
gi|390794532|gb|EIO61823.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10246]
gi|390801293|gb|EIO68354.1| deoxyribodipyrimidine photolyase [Escherichia coli TW11039]
gi|390808844|gb|EIO75663.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09109]
gi|390809092|gb|EIO75898.1| deoxyribodipyrimidine photolyase [Escherichia coli TW07945]
gi|390818924|gb|EIO85280.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10119]
gi|390822429|gb|EIO88549.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09098]
gi|390836798|gb|EIP01277.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4203]
gi|390839614|gb|EIP03713.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4196]
gi|390840970|gb|EIP04943.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09195]
gi|390855214|gb|EIP17953.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14301]
gi|390858757|gb|EIP21127.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14313]
gi|390859063|gb|EIP21429.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4421]
gi|390871281|gb|EIP32709.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4422]
gi|390875564|gb|EIP36573.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4013]
gi|390885711|gb|EIP45907.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4402]
gi|390887707|gb|EIP47637.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4439]
gi|390894196|gb|EIP53725.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4436]
gi|390903553|gb|EIP62599.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1738]
gi|390910002|gb|EIP68765.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4437]
gi|390911691|gb|EIP70385.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1734]
gi|390914331|gb|EIP72873.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4448]
gi|390925932|gb|EIP83539.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1845]
gi|408071851|gb|EKH06182.1| deoxyribodipyrimidine photolyase [Escherichia coli PA7]
gi|408075589|gb|EKH09821.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK920]
gi|408085708|gb|EKH19288.1| deoxyribodipyrimidine photolyase [Escherichia coli PA34]
gi|408089499|gb|EKH22804.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA506]
gi|408094894|gb|EKH27889.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA507]
gi|408101810|gb|EKH34237.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA504]
gi|408109651|gb|EKH41529.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1999]
gi|408116277|gb|EKH47586.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1997]
gi|408121725|gb|EKH52631.1| deoxyribodipyrimidine photolyase [Escherichia coli NE1487]
gi|408129995|gb|EKH60192.1| deoxyribodipyrimidine photolyase [Escherichia coli NE037]
gi|408131840|gb|EKH61857.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK2001]
gi|408140762|gb|EKH70249.1| deoxyribodipyrimidine photolyase [Escherichia coli PA4]
gi|408149997|gb|EKH78616.1| deoxyribodipyrimidine photolyase [Escherichia coli PA23]
gi|408152210|gb|EKH80652.1| deoxyribodipyrimidine photolyase [Escherichia coli PA49]
gi|408157410|gb|EKH85562.1| deoxyribodipyrimidine photolyase [Escherichia coli PA45]
gi|408166470|gb|EKH94038.1| deoxyribodipyrimidine photolyase [Escherichia coli TT12B]
gi|408171756|gb|EKH98856.1| deoxyribodipyrimidine photolyase [Escherichia coli MA6]
gi|408186591|gb|EKI12619.1| deoxyribodipyrimidine photolyase [Escherichia coli CB7326]
gi|408191151|gb|EKI16768.1| deoxyribodipyrimidine photolyase [Escherichia coli EC96038]
gi|408191435|gb|EKI17041.1| deoxyribodipyrimidine photolyase [Escherichia coli 5412]
gi|408232539|gb|EKI55730.1| deoxyribodipyrimidine photolyase [Escherichia coli PA38]
gi|408238586|gb|EKI61379.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1735]
gi|408248765|gb|EKI70758.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1736]
gi|408252524|gb|EKI74167.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1737]
gi|408258867|gb|EKI80088.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1846]
gi|408268098|gb|EKI88503.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1847]
gi|408269341|gb|EKI89587.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1848]
gi|408278615|gb|EKI98318.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1849]
gi|408284809|gb|EKJ03877.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1850]
gi|408287207|gb|EKJ06087.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1856]
gi|408300205|gb|EKJ17929.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1862]
gi|408336260|gb|EKJ51057.1| deoxyribodipyrimidine photolyase [Escherichia coli NE098]
gi|408350257|gb|EKJ64140.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK523]
gi|408352843|gb|EKJ66373.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1304]
gi|408558184|gb|EKK34568.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.2239]
gi|408558632|gb|EKK34992.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4870]
gi|408559774|gb|EKK36074.1| deoxyribodipyrimidine photolyase [Escherichia coli 6.0172]
gi|408584916|gb|EKK59831.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0586]
gi|408589449|gb|EKK63961.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.2524]
gi|408591241|gb|EKK65684.1| deoxyribodipyrimidine photolyase [Escherichia coli 10.0833]
gi|408603865|gb|EKK77478.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0869]
gi|408605279|gb|EKK78795.1| deoxyribodipyrimidine photolyase [Escherichia coli 8.0416]
gi|408609257|gb|EKK82639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.0221]
gi|408616656|gb|EKK89801.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0821]
gi|427214129|gb|EKV83479.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1042]
gi|427216219|gb|EKV85353.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 89.0511]
gi|427216461|gb|EKV85580.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1467]
gi|427233410|gb|EKW01160.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.2281]
gi|427233503|gb|EKW01241.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0039]
gi|427235678|gb|EKW03292.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0091]
gi|427251053|gb|EKW17654.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0056]
gi|427252479|gb|EKW18964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0055]
gi|427253725|gb|EKW20119.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 94.0618]
gi|427269886|gb|EKW34793.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0943]
gi|427270023|gb|EKW34921.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0183]
gi|427275065|gb|EKW39694.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.1288]
gi|427286000|gb|EKW49890.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0428]
gi|427291627|gb|EKW55021.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0427]
gi|427293213|gb|EKW56474.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0939]
gi|427304422|gb|EKW67067.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0003]
gi|427305926|gb|EKW68487.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0932]
gi|427310167|gb|EKW72431.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0107]
gi|427321098|gb|EKW82807.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.1742]
gi|427321883|gb|EKW83546.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0007]
gi|427333669|gb|EKW94765.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0713]
gi|427333765|gb|EKW94853.1| deoxyribodipyrimidine photolyase [Escherichia coli 99.0678]
gi|427336541|gb|EKW97502.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0672]
gi|429259718|gb|EKY43369.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0109]
gi|429261582|gb|EKY44994.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0010]
gi|444550140|gb|ELV28267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 09BKT078844]
gi|444564451|gb|ELV41387.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0839]
gi|444570806|gb|ELV47318.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0848]
gi|444581854|gb|ELV57685.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1753]
gi|444584747|gb|ELV60364.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1775]
gi|444585664|gb|ELV61212.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1793]
gi|444599163|gb|ELV74054.1| deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 700728]
gi|444599599|gb|ELV74465.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA11]
gi|444607783|gb|ELV82346.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1805]
gi|444614058|gb|ELV88298.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA19]
gi|444622532|gb|ELV96483.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA2]
gi|444631680|gb|ELW05272.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA48]
gi|444631979|gb|ELW05557.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA47]
gi|444636673|gb|ELW10063.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA8]
gi|444647044|gb|ELW20028.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 7.1982]
gi|444649530|gb|ELW22412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1781]
gi|444653039|gb|ELW25774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1762]
gi|444662072|gb|ELW34340.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA35]
gi|444666390|gb|ELW38461.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4880]
gi|444672297|gb|ELW44027.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0083]
gi|444674177|gb|ELW45741.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0670]
Length = 472
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + ++ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EDL933]
gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli O157:H7 str. EDL933]
Length = 472
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + ++ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|419066931|ref|ZP_13613517.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3E]
gi|424269007|ref|ZP_17894083.1| deoxyribodipyrimidine photolyase [Escherichia coli PA28]
gi|424579522|ref|ZP_18019463.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1863]
gi|425370990|ref|ZP_18755956.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1864]
gi|425383775|ref|ZP_18767658.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1866]
gi|425390473|ref|ZP_18773935.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1868]
gi|425396593|ref|ZP_18779642.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1869]
gi|425402584|ref|ZP_18785191.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1870]
gi|444929377|ref|ZP_21248524.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0814]
gi|444934693|ref|ZP_21253628.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0815]
gi|444940272|ref|ZP_21258914.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0816]
gi|444994835|ref|ZP_21311427.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA13]
gi|377920201|gb|EHU84227.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3E]
gi|390736222|gb|EIO07564.1| deoxyribodipyrimidine photolyase [Escherichia coli PA28]
gi|390924465|gb|EIP82223.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1863]
gi|408300401|gb|EKJ18101.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1864]
gi|408316818|gb|EKJ33072.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1868]
gi|408317420|gb|EKJ33656.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1866]
gi|408331091|gb|EKJ46292.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1869]
gi|408337828|gb|EKJ52511.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1870]
gi|444542067|gb|ELV21464.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0814]
gi|444551509|gb|ELV29438.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0815]
gi|444566690|gb|ELV43495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0816]
gi|444613944|gb|ELV88187.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA13]
Length = 472
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + ++ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|387792261|ref|YP_006257326.1| deoxyribodipyrimidine photolyase [Solitalea canadensis DSM 3403]
gi|379655094|gb|AFD08150.1| deoxyribodipyrimidine photolyase [Solitalea canadensis DSM 3403]
Length = 434
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF---ALEDLR 102
V W ++DLR++D+ L A K + V+ L++FD IL++ ++ V F L L
Sbjct: 6 TVCWLRRDLRLEDNAALYHALKQASPVLLLFIFDTTILNQLEDKNDARVTFIHDQLCALN 65
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
L + GS L+++ G + EL++E +V+A + E + Q + E L + +
Sbjct: 66 DELVKLGSSLLVKHGTPSAIWTELIQEYPIKTVYANHDYEPYATQRDQSIKELLQQSGI 124
>gi|350563314|ref|ZP_08932136.1| DNA photolyase FAD-binding [Thioalkalimicrobium aerophilum AL3]
gi|349779178|gb|EGZ33525.1| DNA photolyase FAD-binding [Thioalkalimicrobium aerophilum AL3]
Length = 523
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDLRKSL 105
++WFK+DLR+ DH L A++ AV+P+YVF+ + + + + V L DL L
Sbjct: 14 LVWFKRDLRIHDHAPLYFAAQQGAVLPVYVFEPVLWQQPDASLRQWRFVADCLLDLDADL 73
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L+ G V ++ +L ++ + +++++ +E
Sbjct: 74 RALGQGLVFAVGEVTDLFAQLQQDYQISAIWSHQET 109
>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
Length = 440
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 23/161 (14%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR--ILSRYSNEML-----ELVIFALE 99
++ WF +DLR+ D+ L+AASK ++ +YV D R + + L + +L
Sbjct: 3 SLYWFTRDLRLHDNAALLAASKSDMLLCVYVVDPRWFVPGPFQCRALGAHRWRFLWQSLI 62
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
L + L+ G L I FG+ E VI +LV + V +R + E +
Sbjct: 63 SLERDLRPLGQRLHIAFGKPEQVIPDLVHDHNINRV---------IRSRLPGTREAVQWK 113
Query: 160 SLVDGKPKICLWQTPFYDI-------KNLNDLPVSHNEFRK 193
SL D P+ Q + +L+ LP + ++FRK
Sbjct: 114 SLRDKLPQTVFQQFETLSLFTEGSLPMDLSHLPDTFSQFRK 154
>gi|363581247|ref|ZP_09314057.1| cryptochrome-like DNA photolyase [Flavobacteriaceae bacterium HQM9]
Length = 432
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 46 SAVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILS-------RYSNEMLELVIFA 97
+ +IWF+ DLRV+D L A+ K+ +V+ +Y FD R S + + +I
Sbjct: 3 TGLIWFRNDLRVNDQKSLAEATRKHDSVIGVYCFDPRQFSTDPYGFIKTGKFRTQFLIET 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140
+E L+ +L + L + F + E+ + E++ T ++ ++E
Sbjct: 63 VEQLKLNLAKFNIPLFVYFNKPEDKLPEIISAHNCTHIYCQKE 105
>gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
Length = 497
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPL-YVFDHRILSRY------ 86
P ++A K G ++W ++DLR+ D+ L AA + V L +VFD IL
Sbjct: 9 PASSAVEKLPLG--LVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDPLLQRGLQ 66
Query: 87 SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ +E ++ A+ ++ +L+E+G+ L++R I L E+ A +VF + E
Sbjct: 67 ADRRVEFILAAVAEIDAALRERGAALIVRHASAREAIPVLAAELGAQAVFCGRDDE 122
>gi|352105175|ref|ZP_08960731.1| deoxyribodipyrimidine photolyase [Halomonas sp. HAL1]
gi|350598555|gb|EHA14670.1| deoxyribodipyrimidine photolyase [Halomonas sp. HAL1]
Length = 481
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS---------RYSNEMLELVIFAL 98
++W + DLR+ D+ ++ ++ L+V D + L+ R L + +L
Sbjct: 7 IVWLQDDLRIADNPLFHFTARPSYLLCLFVVDEQWLAPLIEGESTPRIGPARLRFLWQSL 66
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
+LR L ++GSDL++R G+ NV+ EL + A V E + V E+L
Sbjct: 67 MELRGELLQRGSDLLVRIGKPSNVVIELAASLNARQVRVAEHPGVDENTHIQAVVESLPS 126
Query: 159 VSLV 162
+ V
Sbjct: 127 ETTV 130
>gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
Length = 515
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDH----------RILSRYSNEMLELVI 95
+A+ WF+ DLRV D+ GL+AA Q V+ ++ FD R + Y L +
Sbjct: 46 TALYWFRNDLRVTDNPGLLAACSSQRVLTVFCFDPADFREGDYGIRRMGPYRAGFLRESV 105
Query: 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
A LR+ L+ L I FG +++ ++++ T + + E + V E
Sbjct: 106 LA---LREQLQGLNISLHIHFGPPGDILPGMIKKYGVTDLHLQREWTRDECLALDAVREG 162
Query: 156 LAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK 193
L V + L+ + +D+P FRK
Sbjct: 163 LPPGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRK 200
>gi|417083169|ref|ZP_11951305.1| deoxyribodipyrimidine photolyase [Escherichia coli cloneA_i1]
gi|355353037|gb|EHG02210.1| deoxyribodipyrimidine photolyase [Escherichia coli cloneA_i1]
Length = 472
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA ++ + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAARRHSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F ++++ E + T +F + E + R + TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTLRNV 124
>gi|448435934|ref|ZP_21586950.1| deoxyribodipyrimidine photolyase [Halorubrum tebenquichense DSM
14210]
gi|445683094|gb|ELZ35497.1| deoxyribodipyrimidine photolyase [Halorubrum tebenquichense DSM
14210]
Length = 502
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAAS-------KYQAVVPLYVFDHRILSRYSNEMLELVIFALED 100
+ W ++DLRV D +GL AA+ ++VFD +L S+ + ++ L
Sbjct: 3 LFWHRRDLRVADSVGLAAATGTGVEGVDRGPAAAVFVFDPDVLDHASDVRVRRLLDGLAA 62
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
LR +E+GSDL++ G V+ L + + A V
Sbjct: 63 LRDDYRERGSDLLVARGDPATVLPRLADALDAERV 97
>gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
gi|47117035|sp|Q9HQ46.2|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum]
gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photolyase [Halobacterium salinarum R1]
Length = 481
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAAS----------KYQAVVPLYVFDHRILSRYSNEMLELVIFA 97
+ W ++DLR D+ GL AA+ V ++ FD +L+ + + ++ A
Sbjct: 3 LFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVAFMLDA 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L LR+ ++ GSDL++R G V+ + ++ AT V
Sbjct: 63 LAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRV 100
>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
Length = 425
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
+ ++ F +DLRV DH L AA VVPL+V D + + L +L+DLR S
Sbjct: 3 TVIVLFNRDLRVHDHPALAAACADAWRVVPLFVIDPGVPGGHRAGFLAE---SLDDLRGS 59
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L+E+G DL++R G L E+ A +V+ +V
Sbjct: 60 LRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADV 96
>gi|331227925|ref|XP_003326630.1| hypothetical protein PGTG_07608 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305620|gb|EFP82211.1| hypothetical protein PGTG_07608 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 596
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 79/360 (21%)
Query: 47 AVIWFKQDLRVDD-------HLGLVAASK-------YQAVVPLYVFDHRILS-------- 84
+ F+ DLR+ D HL V + V+PLYVFD R +
Sbjct: 9 TIALFRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIELSGLEGYR 68
Query: 85 --------------RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEV 130
R + L + ++ +L+ LK+ GSDL++RFG VE +++EE+
Sbjct: 69 QHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATTLKIIEEL 128
Query: 131 K-----ATSVFAEEEVEYH----LRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL 181
+ V+ +EV + +++ ++ E KV L L+ + + +
Sbjct: 129 QRNGFSVDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLT-------LFHS--RSLVHP 179
Query: 182 NDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLP----TFDELKEFVNENPWKLE 237
+DLP + N+ + P S + +L +L PLP F L E + + +
Sbjct: 180 DDLPFTINKTPDVYTPFRSKV--ESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPG 237
Query: 238 ESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGN-TVGGGTNA 296
S +L + + ++L K N + H P++ + + + GG +
Sbjct: 238 YSGSLCEGQGFDEV----FARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESE 293
Query: 297 VLNALQAYLRYLEGTVRDDWQELQEKLRNAESRD----GASFATLFGPALCLGIISRRGV 352
L L Y + +G Q +R+ ++ G ++T F P L G IS R +
Sbjct: 294 ALRRLDDY--FFKGN--------QPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKI 343
>gi|448315195|ref|ZP_21504847.1| deoxyribodipyrimidine photolyase [Natronococcus jeotgali DSM 18795]
gi|445612272|gb|ELY66003.1| deoxyribodipyrimidine photolyase [Natronococcus jeotgali DSM 18795]
Length = 525
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 13 PLESNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAV 72
PL + R +LR + A+++ G + W ++DLRV D+ GL + +
Sbjct: 16 PLRATRRTALRG--AGFAGLLTMGRASARQDVGVRLHWHRRDLRVTDNPGLTGDDR---L 70
Query: 73 VPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVI 123
+P++V D IL+ + ++ ++ AL+ LR+ +++G +L++ G V+
Sbjct: 71 LPVFVHDPAILTHGAPPVVSFLLDALDSLREQYRDRGGELLLARGDPRAVL 121
>gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris]
Length = 681
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFAL 98
SG +++WF++DLRV+D+ L A + AV+ ++++ H R S L+ +L
Sbjct: 4 SGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGHYYPGRVSRWWLKQ---SL 60
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
L SLK G+ L+ + R + I L+E VK+T A + HL +++V + AK
Sbjct: 61 AHLDSSLKSLGTSLVTK--RSTDSISSLLEIVKSTG--ATQLFFNHLYDPISLVRDHRAK 116
Query: 159 VSLV 162
L
Sbjct: 117 EVLT 120
>gi|300781309|ref|ZP_07091163.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
33030]
gi|300533016|gb|EFK54077.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
33030]
Length = 179
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRK--- 103
A+ WF+ DLR+ D+ L A+++ VV L++F+ + + E +RK
Sbjct: 10 ALAWFRDDLRLTDNAALTWAAQHGHVVGLFIFEE--IDAARPLGAAAAWWQRESVRKLHA 67
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
L ++G L+I G +I + E+ AT+V R + A + TLA+ V
Sbjct: 68 DLAQRGVHLIIEHGDPREIIPRIAAELGATAVTWNRRYHLLFRDVDAELKRTLAQSCEVT 127
Query: 164 GKPKICL 170
P L
Sbjct: 128 SHPGYLL 134
>gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H299]
gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H299]
Length = 472
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ--AVVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA + +V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSASVLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|381201670|ref|ZP_09908795.1| deoxyribodipyrimidine photo-lyase [Sphingobium yanoikuyae XLDN2-5]
Length = 458
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYS--NEMLELVIFALEDLRKSL 105
+IWF+QDLR+ D L AA++ V+PLY+ D +++ + +L L + L
Sbjct: 6 IIWFRQDLRLSDQAALAAAAQAGPVIPLYILDDESPRQWAMGGASRWWLHHSLASLNERL 65
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137
+ +GS L++R GR +V+ ++ ++ A V A
Sbjct: 66 RGKGSRLILRRGRCADVLAQVAKDSGAQVVHA 97
>gi|343403561|dbj|BAK61603.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFAL 98
S ++WF++DLR++D+ L AA+K +V+P+Y++ R S L+ +L
Sbjct: 3 SNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQ---SL 59
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
L +SLK GS L++ + + + LVE VKA + A + V HL +++V + K
Sbjct: 60 AHLDQSLKSLGSRLVLI--KTHSTVTALVECVKA--IQATKVVFNHLYDPVSLVRDHNIK 115
Query: 159 VSLVD 163
LV+
Sbjct: 116 EKLVE 120
>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
DSM 6242]
gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
6242]
Length = 467
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILS----RYSNEMLELVIFA 97
R ++ F++D+RVDD+ L+AA V+P ++ D R+ +++ L+ ++ +
Sbjct: 4 RLNRSLFVFRRDMRVDDNSALLAALDMSDVVIPCFILDPRLCDPKGKAFNSNALQFLLES 63
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE-VEYHLRQMMAI 151
L DL+ L++ L + G E VI +L+E ++ +VF + + +++ M I
Sbjct: 64 LYDLKGQLEKVNGRLYLFSGLPEGVIGQLLENLEIDAVFVNHDYTPFSIKRDMQI 118
>gi|343403555|dbj|BAK61600.1| cryptochrome2c [Glycine soja]
gi|343403559|dbj|BAK61602.1| cryptochrome2c [Glycine soja]
gi|343403563|dbj|BAK61604.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFAL 98
S ++WF++DLR++D+ L AA+K +V+P+Y++ R S L+ +L
Sbjct: 3 SNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQ---SL 59
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
L +SLK GS L++ + + + LVE VKA + A + V HL +++V + K
Sbjct: 60 AHLDQSLKSLGSRLVLI--KTHSTVTALVECVKA--IQATKVVFNHLYDPVSLVRDHNIK 115
Query: 159 VSLVD 163
LV+
Sbjct: 116 EKLVE 120
>gi|419924461|ref|ZP_14442350.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-15]
gi|388389960|gb|EIL51464.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-15]
Length = 472
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +I+++ E T +F + E + R V+ L V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVDVERALRNV 124
Query: 160 SLVDG 164
L +G
Sbjct: 125 -LCEG 128
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 35 TAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRIL--SRYSNEML 91
+ A+TS G ++WF++ LRV D+ L + + A P++V D SR +
Sbjct: 1089 SVASTSAAAKGRTLVWFRKALRVHDNPALSRGTLHATACQPVFVLDPWFCQPSRVGANRM 1148
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
++ +L DL L+ +GS L++ G V+ ++ + SV E ++E + + A
Sbjct: 1149 RFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDAA 1208
Query: 152 VDETLAKVSL 161
V L + +
Sbjct: 1209 VRGALERAGV 1218
>gi|352094732|ref|ZP_08955903.1| DNA photolyase FAD-binding [Synechococcus sp. WH 8016]
gi|351681072|gb|EHA64204.1| DNA photolyase FAD-binding [Synechococcus sp. WH 8016]
Length = 552
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIF--ALEDLRKSL 105
++WFK+DLRV DH L A V+PLYV + + + + + +L DLR +L
Sbjct: 53 LVWFKRDLRVKDHQPLQQALLRGPVLPLYVVEPELWQQPDASERQWLFCRESLLDLRLAL 112
Query: 106 KEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ G L++R G V V + +++ EE
Sbjct: 113 AQLGQPLLVRTGDVLEVFERAHRQFGLDGLWSHEET 148
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D+ GL AA + + VV ++ D ILS + + ++ L+ L++
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQED 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+ GS L+I +R+L + A +V+ ++VE RQ V+E+L +V +
Sbjct: 66 YQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGI 122
>gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 469
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+IWF+ D R+ D+ + AA + + V + ++ N V +L L + LKE
Sbjct: 8 LIWFRHDFRLRDNAAITAAIQSRNPVICFYIQESADAKTENAADWWVAESLLALNRQLKE 67
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
+G L + G E +I E+V++ A +F ++ ++ I+ +++ + L
Sbjct: 68 KGGQLHLFEGDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAMGL 121
>gi|343403557|dbj|BAK61601.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFAL 98
S ++WF++DLR++D+ L AA+K +V+P+Y++ R S L+ +L
Sbjct: 3 SNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQ---SL 59
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
L +SLK GS L++ + + + LVE VKA + A + V HL +++V + K
Sbjct: 60 AHLDQSLKSLGSRLVLI--KTHSTVTALVECVKA--IQATKVVFNHLYDPVSLVRDHNIK 115
Query: 159 VSLVD 163
LV+
Sbjct: 116 EKLVE 120
>gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354]
Length = 472
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+ L AA +Y + V+ LY+ R + + S E + L L+
Sbjct: 5 LVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F ++ ++ E + T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAA----SKYQAVVPLYVFDHRILSRYSNE--MLELVIFALED 100
A++W ++DLR+DD+ L A V+ L++FD IL E ++ ++ L +
Sbjct: 20 ALVWHRRDLRIDDNPALSEAIAQVGDQGKVLGLFIFDPDILDDGVTEGSKVDFMLGCLRE 79
Query: 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
L+ + + GSDL+ +G + L + + + +F ++VE
Sbjct: 80 LQTNYRRLGSDLLFMYGEPITSLCSLAKAINTSHLFFNQDVE 121
>gi|417128682|ref|ZP_11975469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0246]
gi|386143638|gb|EIG90114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0246]
Length = 472
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +I+++ E T +F + E + R V+ L V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVDVERALRNV 124
Query: 160 SLVDG 164
L +G
Sbjct: 125 -LCEG 128
>gi|302530487|ref|ZP_07282829.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4]
gi|302439382|gb|EFL11198.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4]
Length = 445
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
++WF++DLR+ DH L A+K+ + ++ LYV D R+L + + ++ +L +L K+L
Sbjct: 1 MLWFRRDLRLRDHAALFEAAKHSKHLLALYVLDDRLLEPAGSPRIAFLLNSLRELDKALS 60
Query: 107 EQGSDLMIRFGRVENVIRELV 127
+ LM+R G + +RE+V
Sbjct: 61 GR---LMVRCG---DPVREVV 75
>gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1]
gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1]
Length = 476
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)
Query: 40 SKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDH-----RILSRYSNEMLEL 93
S+ + +++W + DLR+ D+ L AA S+ + +V +Y+ D R L S L
Sbjct: 2 SRSENQPSIVWLRNDLRLSDNPALTAATSEDRPLVVVYIHDETGDGIRPLGSASKWWLHH 61
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVD 153
+ AL+ +L++ G L + G V+ LV+E+ ATSV R + A +
Sbjct: 62 SLTALD---AALQKLGGQLTLSHGPATQVLPALVDELGATSVHWNRRYTA-ARDIDAGLK 117
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLP--VSHNEFRKLQ-RPLTSPILPPT---- 206
+L + L + L P++ I+N P V +R Q RP+ + PT
Sbjct: 118 ASLREQGLTVESHQGNLLNEPWH-IRNGQGEPYKVFTPYWRAAQERPVRDALRAPTTTTL 176
Query: 207 --LAGAKLE---ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSA---ETILTDKLSK 258
LAG+ A+W LPT + E L E+WT + E+ +T++L+
Sbjct: 177 RWLAGSPASDDIAEWNLLPTRPDWAE-------GLRETWTPGEQGARNRLESFVTERLAD 229
Query: 259 LGKRSK 264
+R +
Sbjct: 230 YHRRDE 235
>gi|432390684|ref|ZP_19633543.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE21]
gi|430921962|gb|ELC42783.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE21]
Length = 472
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+ L AA +Y + V+ LY+ R + + S E + L L+
Sbjct: 5 LVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F ++ ++ E + T +F + E + R V+ TL V
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERTLRNV 124
>gi|343403537|dbj|BAK61591.1| cryptochrome2a [Glycine soja]
gi|343403539|dbj|BAK61592.1| cryptochrome2a [Glycine soja]
gi|343403541|dbj|BAK61593.1| cryptochrome2a [Glycine soja]
gi|343403543|dbj|BAK61594.1| cryptochrome2a [Glycine soja]
gi|343403545|dbj|BAK61595.1| cryptochrome2a [Glycine soja]
gi|343403547|dbj|BAK61596.1| cryptochrome2a [Glycine soja]
gi|343403549|dbj|BAK61597.1| cryptochrome2a [Glycine soja]
Length = 631
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDL 101
S ++WF++DLR++D+ L AA+K +V+P+YV+ + ++ + + +L L
Sbjct: 3 SNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHL 62
Query: 102 RKSLKEQGSDL-MIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
+SLK GS L +I+ + E V+ ++AT V V HL +++V + K
Sbjct: 63 DQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKV-----VFNHLYDPVSLVRDHNIKEK 117
Query: 161 LVD 163
LV+
Sbjct: 118 LVE 120
>gi|338732806|ref|YP_004671279.1| deoxyribodipyrimidine photo-lyase [Simkania negevensis Z]
gi|336482189|emb|CCB88788.1| deoxyribodipyrimidine photo-lyase [Simkania negevensis Z]
Length = 462
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFD--HRILSRYSNEMLELVIFALEDLRKS 104
+ WFKQDLR+ D+ GL A+K +V+P+Y+ D H L S L +L+ L +S
Sbjct: 3 TLFWFKQDLRLSDNQGLYEAAKIGSVLPIYILDPNHFSLGAASRVWLH---HSLKSLSQS 59
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVF 136
L L + G VIR+LV++ + +V+
Sbjct: 60 LD---GKLAVFQGAPLEVIRQLVKKYQIQAVY 88
>gi|441499038|ref|ZP_20981228.1| Deoxyribodipyrimidine photolyase [Fulvivirga imtechensis AK7]
gi|441437283|gb|ELR70637.1| Deoxyribodipyrimidine photolyase [Fulvivirga imtechensis AK7]
Length = 431
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNE--MLELVIFALEDLRKS 104
V WF++DLR+DD+ GL A K A V+ L++FD IL + + + + + ++
Sbjct: 6 VFWFRRDLRLDDNRGLYYALKDNAPVLLLFIFDKNILDDLPKDDPRVTFIHEQITVINQA 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL--AKVSLV 162
L+++ + L++++G + V L++ V+ + E + R+ + + L + + +
Sbjct: 66 LQQKNTSLVVKYGTPDAVWNTLIKTHNIQKVYTNHDYEPYARKRDQSIADLLKNSNIDFI 125
Query: 163 DGKPKICL 170
K ++ L
Sbjct: 126 TFKDQVLL 133
>gi|423528953|ref|ZP_17505398.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
gi|402449821|gb|EJV81656.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
Length = 476
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
++ F++D R+ D+ L A + V+P+Y+ D + + A++D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYIQDETF--SIGSAAKWWLHHAVKDVKKQLEA 63
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E I L+E++ T+V+
Sbjct: 64 LGSTLIIRKGRTEEEILSLIEQLDITAVY 92
>gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
Length = 434
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNE--MLELVIFALEDLRK 103
+ WF++DLR+ D+ GL A K + V+P+++FD IL + + +E+++ AL +
Sbjct: 5 TLFWFRRDLRIQDNCGLYHALKGENRVIPIFIFDKEILKKLPKQDARVEMILLALGAIDI 64
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++K ++ G + + +L+++ V E+ E
Sbjct: 65 AMKRNRCNVGKYHGTPKAIFSKLIKQWNIEKVICNEDYE 103
>gi|78047092|ref|YP_363267.1| photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 500
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 10 LSRPLESNHR--RSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA- 66
+ RP S HR R L R VCC + R A++WF++DLR++D+ L AA
Sbjct: 3 IHRP-ASRHRCARWLMLRSLTVCC---------RARMSYAIVWFRRDLRLEDNPALRAAL 52
Query: 67 SKYQAVVPLYVFDHRILSRYSNEMLELVI--FALEDLRKSLKEQGSDLMIRFGRVENVIR 124
+PLY+ ++ +L L +L+ GS L+IR G V+
Sbjct: 53 DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDGALRALGSGLVIRSGDSAQVLD 112
Query: 125 ELVEEVKATSVFAEEEVE 142
E++ + A +V+ + E
Sbjct: 113 EVIAQTGAVAVYWNRKYE 130
>gi|402839644|ref|ZP_10888128.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. OBRC7]
gi|402287570|gb|EJU36009.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. OBRC7]
Length = 482
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 29/207 (14%)
Query: 48 VIWFKQDLRVDDHLGLVAASK--YQAVVPLYVF------DHRILSRYSNEMLELVIFALE 99
++WF+ DLR+ D+L L AA + + V+ L++ H + R + M + L
Sbjct: 5 LVWFRADLRIHDNLALAAACRDPHAEVLGLFIATPGQWRQHGMAPRQAAFM----VSHLH 60
Query: 100 DLRKSLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDET 155
L+ +L E+G L I F ++ + + + T +F + E + RQ A+V++T
Sbjct: 61 SLQAALAEKGIPLQIEHAADFTASVALLASICRQRQVTHLFYNYQYEINERQRDAVVEKT 120
Query: 156 LAKVSLVDGKPKICLWQTPFYDIKNLNDL-----PVSHNEFRKLQRPLTSPILPPTLAGA 210
LA+V+ + L P + ++ P + R+LQ LP +A
Sbjct: 121 LAEVTCQGFDDSVLL--PPGSVLTGSREMYKVFTPFKNAFIRRLQE-----ALPECVAAP 173
Query: 211 KLEADWGPLPTFDELKEFVNENPWKLE 237
K+ A GP+ E+K + P+ E
Sbjct: 174 KVRAG-GPIAAASEVKIDYPQTPFDSE 199
>gi|351734424|ref|NP_001235220.1| cryptochrome 2 [Glycine max]
gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
Length = 634
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE--LVIFALEDL 101
S ++WF++DLR++D+ L AA+K +V+P+YV+ + ++ + + +L L
Sbjct: 3 SNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHL 62
Query: 102 RKSLKEQGSDL-MIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
+SLK GS L +I+ + E V+ ++AT V V HL +++V + K
Sbjct: 63 DQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKV-----VFNHLYDPVSLVRDHNIKEK 117
Query: 161 LVD 163
LV+
Sbjct: 118 LVE 120
>gi|423649036|ref|ZP_17624606.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
gi|401284534|gb|EJR90400.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
Length = 476
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
+I F++D R+ D+ L A + V+P+Y+ D + S L A+ D++K L+
Sbjct: 6 IIMFQKDFRLYDNPALFEAVQSGEVLPVYIQDETFSIGSASKWWLH---HAVIDVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E I L+E++ T+V+
Sbjct: 63 ALGSTLIIRKGRTEEEILSLIEQLDITAVY 92
>gi|354611090|ref|ZP_09029046.1| Deoxyribodipyrimidine photo-lyase [Halobacterium sp. DL1]
gi|353195910|gb|EHB61412.1| Deoxyribodipyrimidine photo-lyase [Halobacterium sp. DL1]
Length = 467
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++DLR D+LGL AA+ VVP++ FD +L + + ++ AL LR+ +E
Sbjct: 3 LFWHRRDLRTADNLGLAAAADAGDVVPVFCFDDAVLDHAAPSRMAFMLDALAALRERYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSV 135
G DL++R G V+ +L E A V
Sbjct: 63 LGGDLLVRHGDPSAVLPDLAREFGADRV 90
>gi|448739551|ref|ZP_21721563.1| deoxyribodipyrimidine photolyase [Halococcus thailandensis JCM
13552]
gi|445799170|gb|EMA49551.1| deoxyribodipyrimidine photolyase [Halococcus thailandensis JCM
13552]
Length = 465
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
+ W ++DLR D+ L AA++ V+P++VFD +L S + ++ AL+ L+KS +E
Sbjct: 3 IHWHRRDLRAADNRALAAAAEDGPVLPVFVFDPDVLQYASPPRVAFLLAALDSLQKSYRE 62
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVF 136
+GSDL G V+ E+ +E +F
Sbjct: 63 RGSDLYTVEGDPAEVLPEIADEHGVGELF 91
>gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 437
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYS--NEMLELVIFALEDLRK 103
+ WFK+DLR+DD+ L A + V+P+++F IL R+ + +I +L+ L K
Sbjct: 5 VIFWFKRDLRIDDNRALFEACQNSFEVIPVFIFIPSILERFKSYDRRTGFLIESLKHLSK 64
Query: 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVD 163
++++G L + V L+ + ++F + + V+ET+ K+ L +
Sbjct: 65 EIEKKGGRLYCFHDEPQRVFLTLIRKYGIQAIFTNRAFSWSGEE----VEETVKKLCLNE 120
Query: 164 G 164
G
Sbjct: 121 G 121
>gi|423384690|ref|ZP_17361946.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
gi|401639360|gb|EJS57099.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
Length = 476
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE 107
++ F++D R+ D+ L A + V+P+Y+ D + + A++D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYIQDETF--SIGSAAKWWLHHAVKDVKKQLEA 63
Query: 108 QGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR GR E I L+E++ T+V+
Sbjct: 64 LGSTLIIRKGRTEEEILSLIEQLDITAVY 92
>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
Length = 475
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 47 AVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
A++WF++DLR+D + L AA V+PL++ D R + +LE L +SL
Sbjct: 6 AILWFRRDLRLDANPALAAAMARGPVIPLFILD--PADRPGAASRWWLHGSLEALGESLA 63
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHL 145
G+ L++R G ++ L E A ++F E HL
Sbjct: 64 RLGAPLILRRGSPSEILPALTAETDARAIFWNRLYEPHL 102
>gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
gi|386628250|ref|YP_006147970.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i2']
gi|386633170|ref|YP_006152889.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i14']
gi|386638069|ref|YP_006104867.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
gi|422365262|ref|ZP_16445764.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
gi|432435293|ref|ZP_19677694.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE188]
gi|432455579|ref|ZP_19697780.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE201]
gi|432494518|ref|ZP_19736336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE214]
gi|432503357|ref|ZP_19745094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE220]
gi|432522802|ref|ZP_19759941.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE230]
gi|432567488|ref|ZP_19804015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE53]
gi|432591767|ref|ZP_19828096.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE60]
gi|432606534|ref|ZP_19842729.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE67]
gi|432650177|ref|ZP_19885939.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE87]
gi|432782556|ref|ZP_20016742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE63]
gi|432977374|ref|ZP_20166199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE209]
gi|432994445|ref|ZP_20183061.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE218]
gi|432998863|ref|ZP_20187403.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE223]
gi|433057009|ref|ZP_20244093.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE124]
gi|433086323|ref|ZP_20272720.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE137]
gi|433114600|ref|ZP_20300416.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE153]
gi|433124259|ref|ZP_20309848.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE160]
gi|433138278|ref|ZP_20323565.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE167]
gi|433148106|ref|ZP_20333172.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE174]
gi|433211578|ref|ZP_20395193.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE99]
gi|442606929|ref|ZP_21021724.1| Deoxyribodipyrimidine photolyase [Escherichia coli Nissle 1917]
gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
gi|355419149|gb|AER83346.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i2']
gi|355424069|gb|AER88265.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i14']
gi|430966872|gb|ELC84235.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE188]
gi|430984902|gb|ELD01519.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE201]
gi|431028034|gb|ELD41079.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE214]
gi|431042359|gb|ELD52851.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE220]
gi|431054922|gb|ELD64491.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE230]
gi|431103321|gb|ELE07991.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE53]
gi|431133211|gb|ELE35209.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE60]
gi|431140433|gb|ELE42204.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE67]
gi|431193548|gb|ELE92884.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE87]
gi|431332268|gb|ELG19511.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE63]
gi|431482478|gb|ELH62181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE209]
gi|431509446|gb|ELH87697.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE218]
gi|431514432|gb|ELH92274.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE223]
gi|431573996|gb|ELI46785.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE124]
gi|431609359|gb|ELI78684.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE137]
gi|431637100|gb|ELJ05219.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE153]
gi|431649572|gb|ELJ16919.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE160]
gi|431665247|gb|ELJ31974.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE167]
gi|431676999|gb|ELJ43082.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE174]
gi|431736233|gb|ELJ99575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE99]
gi|441712236|emb|CCQ07701.1| Deoxyribodipyrimidine photolyase [Escherichia coli Nissle 1917]
Length = 472
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E + T +F + E + R + TL V
Sbjct: 65 ALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERTLRNV 124
>gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
Length = 488
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 48 VIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLK 106
V+WF++DLR++D+ L A + + ++P+++ D L + +L L SL+
Sbjct: 12 VLWFRRDLRLNDNPALYHAVATGRPILPVFILDRDPDRPAGAASLWWLDKSLRALDDSLR 71
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
E+GS L++R G ++ L+E+ A ++F
Sbjct: 72 ERGSRLILRRGDSLTQLQSLIEDTGADALF 101
>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
Length = 476
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LSRYSNEMLELVIFALEDLRKSLK 106
++ F++D R+ D+ L A++ VVP+YV D + S L A+ D++K L+
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYVHDETFPMGSASKWWLH---HAIIDVKKQLE 62
Query: 107 EQGSDLMIRFGRVENVIRELVEEVKATSVF 136
GS L+IR G + I L+E++ T+V+
Sbjct: 63 TLGSTLIIRKGNTQEEIFSLIEQLGITAVY 92
>gi|429190056|ref|YP_007175734.1| deoxyribodipyrimidine photolyase [Natronobacterium gregoryi SP2]
gi|448325964|ref|ZP_21515338.1| deoxyribodipyrimidine photolyase [Natronobacterium gregoryi SP2]
gi|429134274|gb|AFZ71285.1| deoxyribodipyrimidine photolyase [Natronobacterium gregoryi SP2]
gi|445613519|gb|ELY67217.1| deoxyribodipyrimidine photolyase [Natronobacterium gregoryi SP2]
Length = 468
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 50 WFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQ 108
W ++DLR D+ L AAS + VV L+VFD +L S + ++ AL+ LR ++
Sbjct: 5 WHRRDLRTRDNRSLARAASTDEPVVSLFVFDPGVLEHASPIRVACLLEALDGLRSWYRDH 64
Query: 109 GSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
GSDL++ G + + + E +V E R+ V L S+
Sbjct: 65 GSDLLVARGDPSDSLPRIAAEYDVDTVTWNENYSGLARERDRAVTAALEDASV 117
>gi|89076746|ref|ZP_01163027.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp.
SKA34]
gi|89047602|gb|EAR53213.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp.
SKA34]
Length = 486
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DH L VAA+ V+ +Y+ + +LS YS + +LED+
Sbjct: 1 MVWLKRDLRLTDHQALSVAANSAFPVLLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNHQ 60
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L S + I G + +L+ ++F+ +E+
Sbjct: 61 LACVNSQVFIFHGNAVECLDQLMHHCPINALFSHQEI 97
>gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis]
Length = 661
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 25/106 (23%)
Query: 43 RSGSAVIWFKQDLRVDDHLGLVAA--------SKYQA--VVPLYVFDHRILSRYSNEM-- 90
R +A+IWF+ DLR+ DH L +A S+ Q+ ++P Y D R L+ + E+
Sbjct: 33 RKPAALIWFRNDLRLADHEPLHSAAADLQHCLSQGQSPLLLPFYCLDERELAPRAGELPQ 92
Query: 91 -------------LELVIFALEDLRKSLKEQGSDLMIRFGRVENVI 123
L L++ A LR +L+ GSDL+ GR E ++
Sbjct: 93 EGGLDIPQLGPHRLRLLLEACASLRAALRRLGSDLLAAQGRPEALV 138
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,601,908,403
Number of Sequences: 23463169
Number of extensions: 276598762
Number of successful extensions: 832479
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 1525
Number of HSP's that attempted gapping in prelim test: 831029
Number of HSP's gapped (non-prelim): 2155
length of query: 422
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 277
effective length of database: 8,957,035,862
effective search space: 2481098933774
effective search space used: 2481098933774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)