BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014573
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 30 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 87
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 88 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 147
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 148 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 205
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 206 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 232
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 233 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 267
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 268 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 316
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
Length = 525
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 29 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 86
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 87 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 146
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 147 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 204
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 205 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 231
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 232 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 266
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 267 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 315
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
Length = 526
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 30 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 87
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 88 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 147
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 148 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 205
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 206 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 232
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 233 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 267
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 268 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 316
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 130/330 (39%), Gaps = 71/330 (21%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLE-------LVIFA 97
+ ++WF+ DLR+ DH L A K A+ +Y +D R ++ + + +
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQS 66
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+++L +SL++ G+ L++ G E VI ++ +++ A +++ EV Q V+ L
Sbjct: 67 VQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVT----QEELDVERNLV 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKLE 213
K + G W + ++L DLP +FRK I P A ++L
Sbjct: 123 KQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL- 181
Query: 214 ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSP 273
LP+ + E P + P
Sbjct: 182 -----LPSPNIKLELTAPPP------------------------------------EFFP 200
Query: 274 RKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGAS 333
+ D + +G G A L LQ Y + G D++E + + GA
Sbjct: 201 QINFDHRSVLAFQG-----GETAGLARLQDY--FWHGDRLKDYKETRNGMV------GAD 247
Query: 334 FATLFGPALCLGIISRRGVHYEAIKFEKER 363
+++ F P L LG +S R ++ E ++E+ER
Sbjct: 248 YSSKFSPWLALGCLSPRFIYQEVKRYEQER 277
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + + + + L++L++
Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 65 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 106
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + + + + L++L++
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 66 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 107
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 46 SAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRIL--SRYSNEM-LELVIFALEDL 101
+ F++DLR++D+ GL A S+ V+P+++ D R L + Y +E + +I +L +L
Sbjct: 2 DCIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLEL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L+++GS L + FG E V+ +V A V
Sbjct: 62 DDELRKKGSRLNVFFGEAEKVVSRFFNKVDAIYV 95
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
Length = 537
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRIL-----------SRYSNEML 91
SGS +IWF++ LRV D+ L ASK + + P++V D + SR +
Sbjct: 5 SGS-LIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRI 63
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
++ +L+DL SLK+ GS L++ G V+ ++E K + E + + + + +
Sbjct: 64 RFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVK 123
Query: 152 VDETLAKVSLVDGKPKICLWQTPFYDI-KNLNDLPVSHNEFRKLQRPLTSPILPPTLAGA 210
V + + + P P + I KN P+S+ F K+ P+ A +
Sbjct: 124 VKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAG-------EPSCAKS 176
Query: 211 KLEADWGPLPTFDELKEF-VNENPWKLEE 238
+L + LP ++ ++E P LEE
Sbjct: 177 ELVMSYSSLPPIGDIGNLGISEVP-SLEE 204
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 4 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 63
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ L V
Sbjct: 64 ALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV 123
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLRV+D+ L AA + V+ L+V+ H R S L+ +L L
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLK---NSLAQLD 71
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
SL+ G+ L+ + R + + L++ VK+T A + HL +++V + AK
Sbjct: 72 SSLRSLGTCLITK--RSTDSVASLLDVVKSTG--ASQIFFNHLYDPLSLVRDHRAK 123
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
Thermophilus
pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
Chromophore
pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
Length = 420
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDH---RILSRYSNEMLELVIFALEDL 101
G ++W + DLR+ DH L+ A VV L V D + R LE V L
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKTTPRRRAWFLENV----RAL 57
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137
R++ + +G L + G + E +KA +V+A
Sbjct: 58 REAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 223 DELKEFVN-ENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSF 281
D++KE +N + P KL +L ++ +E I L++ ++ ++L + H D +
Sbjct: 114 DKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 173
Query: 282 FVTDKGNTVGGGTNAVLNALQAYLRYLEGTVR 313
FVT++ GG A L+ YLR +G R
Sbjct: 174 FVTNQVQANGGHILAHSATLRVYLRKGKGGKR 205
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
GS+ I + D + G +AAS+ R+LS Y N VIFAL++LR+
Sbjct: 332 GSSTIMDQVDAALGLEPGKLAASR------------RVLSDYGNMSGATVIFALDELRRQ 379
Query: 105 LKEQGS-------DLMIRFG 117
KE + +M+ FG
Sbjct: 380 RKEAAAAGEWPELGVMMAFG 399
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 223 DELKEFVN-ENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSF 281
D +KE +N + P KL +L ++ +E I L++ ++ ++L + H D +
Sbjct: 114 DMIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 173
Query: 282 FVTDKGNTVGGGTNAVLNALQAYLRYLEGTVR 313
FVT++ GG A L+ YLR +G R
Sbjct: 174 FVTNQVQANGGHILAHSATLRVYLRKGKGGKR 205
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
GS+ I + D + G +AAS+ R+LS Y N VIFAL++LR+
Sbjct: 302 GSSTIMDQVDAALGLEPGKLAASR------------RVLSDYGNMSGATVIFALDELRRQ 349
Query: 105 LKEQGS-------DLMIRFG 117
KE + +M+ FG
Sbjct: 350 RKEAAAAGEWPELGVMMAFG 369
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 22 LRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR 81
L +Y S A + A+IWF + L ++++ LV + +V L FD
Sbjct: 45 LSQKYIVKYIASHDDIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFD-- 102
Query: 82 ILSRYSNEMLELVIFALEDLRKSLKEQGSDLMI--RFGRVENVIRELVE-EVK-ATSVFA 137
YSN VI L+ + +L +D + F ++ ++ L++ + K T+V
Sbjct: 103 ----YSN-----VIAILQKISINLWNPSTDSLQSKHFKTCQDKLKLLLDFQWKFNTNVSF 153
Query: 138 EEEVEYHLRQMMAIVDETLAKVSLV-DGKPKICL---WQTPF 175
E+ L+ + I+D+ K L KP L +Q+PF
Sbjct: 154 EDRTTVSLKDLQCILDDENGKCGLAHSSKPNFVLVPNFQSPF 195
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 22 LRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR 81
L +Y S A + A+IWF + L ++++ LV + +V L FD
Sbjct: 45 LSQKYIVKYIASHDDIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFD-- 102
Query: 82 ILSRYSNEMLELVIFALEDLRKSLKEQGSDLMI--RFGRVENVIRELVE-EVK-ATSVFA 137
YSN VI L+ + +L +D + F ++ ++ L++ + K T+V
Sbjct: 103 ----YSN-----VIAILQKISINLWNPSTDSLQSKHFKTCQDKLKLLLDFQWKFNTNVSF 153
Query: 138 EEEVEYHLRQMMAIVDETLAKVSLV-DGKPKICL---WQTPF 175
E+ L+ + I+D+ K L KP L +Q+PF
Sbjct: 154 EDRTTVSLKDLQCILDDENGKCGLAHSSKPNFVLVPNFQSPF 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,178,869
Number of Sequences: 62578
Number of extensions: 489755
Number of successful extensions: 1336
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 25
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)