BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014573
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 24/176 (13%)
Query: 42 GRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEM---------L 91
G G A++WF+ DLRV D+ +V A + AV+P+Y D RI + ++
Sbjct: 81 GGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRA 140
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
+ +I LEDL+++L +QG DL+IR G+ E+++ + + V A +V+A +E + +
Sbjct: 141 QFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHL 200
Query: 152 VDETLAKVSLVDG---------KPKICL-WQTPFYDIKNL----NDLPVSHNEFRK 193
V + L +V + G PK+ L W Y + +L N+LP + +FRK
Sbjct: 201 VRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRK 256
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 73 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 130
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 131 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 190
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 191 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 248
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDEL 225
+S +P +L DWG +PT ++L
Sbjct: 249 CSIRSSTRIPLSLGPTPSVDDWGDVPTLEKL 279
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 139/346 (40%), Gaps = 89/346 (25%)
Query: 47 AVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRI--------LSRYSNEMLELVIFA 97
A++WF+ DLRV D+ L+ A +A++P+Y D R+ + + + +I
Sbjct: 80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIEC 139
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV--------EYHLRQMM 149
L DL+++L ++G DL+I+ G+ E+++ L + KA +V+A +E + R +
Sbjct: 140 LNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQ 199
Query: 150 AIVDETLAKVSLVDGKPKIC----LWQTPFYDIKNL----NDLPVSHNEFRK----LQRP 197
+V + + G +W + Y I +L LP + +FRK +
Sbjct: 200 KLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKV 259
Query: 198 LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLS 257
LP + DWG +P ++S
Sbjct: 260 RNCTKLPTSFGPPPEVGDWGHVP----------------------------------QVS 285
Query: 258 KLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQ 317
+LG + ++ KG GG +A L + Y + D
Sbjct: 286 ELGLQQEK------------------VSKGMNFVGGESAALGRVHDYF------WKKDLL 321
Query: 318 ELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
++ ++ RN GA ++T F P L G +S R ++ E ++EKER
Sbjct: 322 KVYKETRNGML--GADYSTKFSPWLASGSLSPRFIYEEVKRYEKER 365
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 17/160 (10%)
Query: 50 WFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDHRILSRYSNEM-------LELVIFALEDL 101
WF+ DLRV D+ L +A+ + +V+P+Y FD R + S+ + +I ++ +L
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 179
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161
RK+L+ +GS+L++R G+ E V+ EL +E+ A +V+A EV + + + ET K
Sbjct: 180 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKI-ETAMKEEG 238
Query: 162 VDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR-KLQR 196
V+ K W + Y + +L DLP ++ F+ K+Q+
Sbjct: 239 VEVK---YFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQK 275
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 41/213 (19%)
Query: 46 SAVIWFKQDLRVDDHLGLV-AASKYQAVVPLYVFDHRILSRYSNEML-------ELVIF- 96
+AV+WF+ DLRV D+ L A + + V+P+Y FD RY+ +F
Sbjct: 3 TAVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDP---DRYTESEYGPPKTGGHRAVFR 59
Query: 97 --ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDE 154
A+ DLR SL+++G DL++R GR V+ EL + A +V+A+ + R+ A V
Sbjct: 60 RQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVAS 119
Query: 155 TLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNE-------FRK-------LQRPLTS 200
L I L Q + + + +DLP + +RK ++ P ++
Sbjct: 120 ALDDAG-------IALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSA 172
Query: 201 PILPPTLAGAKLEADWGPLPTFDELKEFVNENP 233
P PT G GP+PT + L V+E P
Sbjct: 173 PETVPTPDGLTP----GPVPTVESLG--VSEPP 199
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 29/206 (14%)
Query: 44 SGSAVIWFKQDLRV-DDHLGLVAASKYQAVVPLYVFD--------HRILSRYSNEMLELV 94
S + + + DLR+ D+ + A + ++PLY FD H + L +
Sbjct: 4 SRTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFL 63
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA-EEEVEYHLRQMMAIVD 153
+ +++DLR LK+ GS L++R G+ E+V+ EL++++ + S A EEV + V+
Sbjct: 64 LDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKS----VE 119
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSH--------NEFRKL--QRPLTSPIL 203
E L ++ + W + Y + +DLP SH +FRK + P+L
Sbjct: 120 EKLKEICCQNKVRVQTFWGSTLY---HRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVL 176
Query: 204 --PPTLAGAKLEADWGPLPTFDELKE 227
P + + GP+PTFD L +
Sbjct: 177 STPEQVKSPPSGLEEGPIPTFDSLGQ 202
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 139/331 (41%), Gaps = 75/331 (22%)
Query: 51 FKQDLRVDDHLGLVAASK-YQAVVPLYVFD--HRILSRYSN------EMLELVIFALEDL 101
+ DLR+ D+ L A + +VPLY FD H + + Y N L+ ++ ++ DL
Sbjct: 12 LRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDL 71
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEV-KATSVFAEEEVEYHLRQMMAIVDETLAKVS 160
R +LK++GS+L++R G+ E VI +LV+++ ++V EE + + V + ++
Sbjct: 72 RITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRL- 130
Query: 161 LVDGKPKICLWQTPFYD-----IKNLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEAD 215
G W + Y ++++ LP + +FRK +E
Sbjct: 131 ---GIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRK-----------------AVETQ 170
Query: 216 WGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPR 274
PTF ++ + + P LEE S + + LTD PR
Sbjct: 171 GKVRPTF-QMPDKLKPLPSGLEEGSVPSHEDFDQQDPLTD------------------PR 211
Query: 275 KRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASF 334
S GG + L L+ Y + E + +++ + L G +
Sbjct: 212 TAFPCS-----------GGESQALQRLEHY--FWETNLVASYKDTRNGLI------GLDY 252
Query: 335 ATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
+T F P L LG +S R ++ + K+EKER A
Sbjct: 253 STKFAPWLALGCVSPRYIYEQIGKYEKERTA 283
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 46 SAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSR--YSNEML-----ELVIFA 97
+ ++W++ DLRV DH L +A K VV LY FD R + + E ++ +
Sbjct: 5 TVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLES 64
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
+ DLR+SL++ GSDL++R G E VI LV E++ +V EV
Sbjct: 65 VADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEV 108
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 131/350 (37%), Gaps = 82/350 (23%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA------VVPLYVFDH-------RILSRYSNEMLELV 94
VIWF+ DLR+ D+ + A+ + VVP+YVFD R L+R+ +
Sbjct: 7 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 66
Query: 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRE--LVEEVKATSVFAEEEVEYHLRQMMAIV 152
+ + DL+ SL+ GSDL++R G+ +VI E L T + + EV +M V
Sbjct: 67 LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAV 126
Query: 153 DETLAKVSLVDGKPKICL---WQTPFYDIKN--------LNDLPVSHNEFRKLQRPLTSP 201
E + G + W + Y I + L+DLP FR
Sbjct: 127 -ERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRN-------- 177
Query: 202 ILPPTLAGAKLEA-----DWGPLPTFDELKEFVNENPWKLEE-SWTLINNMSAETILTDK 255
K+E+ D P PT +EL P +E W M + L
Sbjct: 178 ---------KVESKCKVRDVIPAPTANELGHV----PASVEGFEW-----MPKPSDLPFA 219
Query: 256 LSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDD 315
S++ + + + R LD GG + L ++ YL
Sbjct: 220 SSEIAMDCDKRIKDCLDERSVLD-----------FKGGESNALARVKYYL---------- 258
Query: 316 WQE--LQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKER 363
W+ L G ++T P L LG +S R V E ++E ER
Sbjct: 259 WESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIRRYESER 308
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 130/330 (39%), Gaps = 71/330 (21%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLE-------LVIFA 97
+ ++WF+ DLR+ DH L A K A+ +Y +D R ++ + + +
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQS 66
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+++L +SL++ G+ L++ G E VI ++ +++ A +++ EV Q V+ L
Sbjct: 67 VQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVT----QEELDVERNLV 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKLE 213
K + G W + ++L DLP +FRK I P A ++L
Sbjct: 123 KQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL- 181
Query: 214 ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSP 273
LP+ + E P + P
Sbjct: 182 -----LPSPNIKLELTAPPP------------------------------------EFFP 200
Query: 274 RKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGAS 333
+ D + +G G A L LQ Y + G D++E + + GA
Sbjct: 201 QINFDHRSVLAFQG-----GETAGLARLQDY--FWHGDRLKDYKETRNGMV------GAD 247
Query: 334 FATLFGPALCLGIISRRGVHYEAIKFEKER 363
+++ F P L LG +S R ++ E ++E+ER
Sbjct: 248 YSSKFSPWLALGCLSPRFIYQEVKRYEQER 277
>sp|Q05380|YAT1_SYNP1 Uncharacterized 31.6 kDa protein in atpI 5'region OS=Synechococcus
sp. (strain PCC 6716) PE=4 SV=1
Length = 284
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLEL--VIFALEDLRKS 104
+ W ++DLR+ D+LGL AA ++ VV ++ FD +L + + ++ L+ L+++
Sbjct: 7 LFWHRRDLRLADNLGLYAARQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQALKEA 66
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+++G L++ G VI E+ +KAT+V E+VE + R+ +V TL + +
Sbjct: 67 YQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDLGIA 124
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 16/160 (10%)
Query: 51 FKQDLRVDDHLGLV-AASKYQAVVPLYVFD-------HRILSRYSNEMLELVIFALEDLR 102
F+ DLRV+D+L L AA + + ++ + F+ H + + +L+ LR
Sbjct: 21 FRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQSLKQLR 80
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
L+ +G L++ G + ++ EL+ E + ++F + Y+ R + ++ + +
Sbjct: 81 TELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGYYERLQLGLLQQRFPFLPFH 140
Query: 163 DGKPKICLW---QTPFYDIKNLNDLPVSHNEFRKLQRPLT 199
+ P L+ + PF L DLP + ++FRK PL+
Sbjct: 141 E-TPNNTLFSEQELPF----ELADLPETFSQFRKKVEPLS 175
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 28 CVCCVSPTA----AATSKGRSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRI 82
CVC SP++ TS ++IWF++ LRV D+ L ASK + + P++V D
Sbjct: 5 CVC--SPSSYRLNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHY 62
Query: 83 L-----------SRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVK 131
+ SR + ++ +L+DL SLK+ GS L++ G V+ ++E K
Sbjct: 63 MESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWK 122
Query: 132 ATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDI-KNLNDLPVSHNE 190
+ E + + + + + V + + + P P + I KN P+S+
Sbjct: 123 VKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQS 182
Query: 191 FRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEF-VNENPWKLEE 238
F K+ P+ A ++L + LP ++ ++E P LEE
Sbjct: 183 FLKVAG-------EPSCAKSELVMSYSSLPPIGDIGNLGISEVP-SLEE 223
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 20/197 (10%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-------LSRYSNEMLELVIFA 97
+A++WF+ DLR DH + AS ++ D R R +I
Sbjct: 2 ANALVWFRNDLRTIDHEPFLRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIEN 61
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYH----LRQMMAIVD 153
L DLR L+ G +L++R GR E V++ L+ + +V E + + D
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCD 121
Query: 154 ETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRK---LQRPLTSPILPPTLAGA 210
+ + G I + PF + D P +FRK Q SP+ P
Sbjct: 122 QHGIATHVAYGDTLIHPDELPF----EIADTPELFTDFRKEIEKQCEARSPLEEPIRIHG 177
Query: 211 KL--EADWGPLPTFDEL 225
L E + G +PT + L
Sbjct: 178 TLPEEVNAGDIPTLESL 194
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + + + + L++L++
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 66 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 107
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAAS----------KYQAVVPLYVFDHRILSRYSNEMLELVIFA 97
+ W ++DLR D+ GL AA+ V ++ FD +L+ + + ++ A
Sbjct: 3 LFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVAFMLDA 62
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L LR+ ++ GSDL++R G V+ + ++ AT V
Sbjct: 63 LAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRV 100
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ L V
Sbjct: 65 ALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV 124
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 48 VIWFKQDLRVDDHLGLVAA-------SKYQAVVPLYVFDHRILSR--YSNEMLELVIFAL 98
++WF+ LR+ D+ L+ A S+ + P+++FD ++ ++ +L
Sbjct: 6 ILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLESL 65
Query: 99 EDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
DL + L+E G L + G NV+R L EE+ + E++ E
Sbjct: 66 ADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCE 109
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLR++D+ L AA+ +V P++++ R S ++ +L L
Sbjct: 8 IVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ---SLAHLS 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+SLK GSDL + + N I +++ ++ T A + V HL +++V + K LV
Sbjct: 65 QSLKALGSDLTLI--KTHNTISAILDCIRVTG--ATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 163 D 163
+
Sbjct: 121 E 121
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 22/184 (11%)
Query: 47 AVIWFKQDLRVDDHLGLVAAS-KYQAVVPLYVFDH--RILSRYSNEML------ELVIFA 97
+ WF DLRV+D+ L AS + ++ LY + L+RY+ + +
Sbjct: 6 GLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFLNQT 65
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
L DL SL G L + +R L+ +V+ T ++ + RQ +A + + +
Sbjct: 66 LADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQDFS 125
Query: 158 KVSLVDGKPKICLW--QTPFYDIKNLNDLPVSHNEFRK------LQRPLTSP-ILPPTLA 208
V + L Q PF L LP + +FRK L P+ P +LPP
Sbjct: 126 SVHIHQQALHSLLSEPQLPF----ALEALPSTFTQFRKQVETISLSAPMGYPHVLPPIEQ 181
Query: 209 GAKL 212
G +L
Sbjct: 182 GWQL 185
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLR++D+ L AA+ +V P++++ R S ++ +L LR
Sbjct: 8 IVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQ---SLAHLR 64
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLV 162
+SLK GS+L + + + + +++ V+AT A + V HL +++V + K LV
Sbjct: 65 QSLKALGSELTLI--KTHSTVSAILDCVRATG--ATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 163 D 163
+
Sbjct: 121 E 121
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAV---------VPLYVFDH-----RILSRYSNEMLEL 93
++WF+ LR+ D+ L+ A K V P+++FD RI+ N M +
Sbjct: 6 ILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVG--YNRM-KF 62
Query: 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ +L DL + ++ G L++ G V+R L EE+ + E++ E
Sbjct: 63 LLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCE 111
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV-FAEEEVEYHLRQMMAIVDETLAK 158
DL+ SL+ GSDL++R G ++VI+ LVE +KA + H ++T+A
Sbjct: 90 DLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAVWMTSHEGSEEKSEEKTVAS 149
Query: 159 VSLVDGKPKICLWQTPFY-------DIKNLNDLPVSHNEFRKLQRPL 198
G LW Y I +LNDLP +RK PL
Sbjct: 150 FCAKSGI-DFKLWDDEKYLIHDRDTGITHLNDLPDVFTTYRKQIEPL 195
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLE----LVIFALEDLRK 103
++WF++DLR+ D+L L AA + + L ++ +++M + L L+
Sbjct: 5 LVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQT 64
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ F ++ + + + +F + E++ RQ A V++TL V
Sbjct: 65 ALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPSV 124
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRIL--SRYSNEMLELVIFALEDLRKS 104
++W K+DLR+ DH L AA + + + LY+F+ +L + YS V +L+ + +
Sbjct: 6 LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAINRD 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141
L + +++I + + E ++++ +EV
Sbjct: 66 LAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEV 102
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLRV+D+ L AA + V+ L+V+ H R S L+ +L L
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLK---NSLAQLD 71
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
SL+ G+ L+ + R + + L++ VK+T A + HL +++V + AK
Sbjct: 72 SSLRSLGTCLITK--RSTDSVASLLDVVKSTG--ASQIFFNHLYDPLSLVRDHRAK 123
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDH---RILSRYSNEMLELVIFALEDL 101
G ++W + DLR+ DH L+ A VV L V D + R LE V L
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKTTPRRRAWFLENV----RAL 57
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
R++ + +G L + G + E +KA +V+A + R A V E L
Sbjct: 58 REAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSYTPYGRYRDAKVQEAL 112
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKS 104
++W ++DLR++DHL L A + A +V ++ D++IL + + ++ L+ L+
Sbjct: 20 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAPARVAYLLGCLQSLQDH 79
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
+ GS+L++ ++ +L + A V
Sbjct: 80 YQRLGSELLVFQADPVQLLPKLANTLGAHGV 110
>sp|E9Q555|RN213_MOUSE E3 ubiquitin-protein ligase RNF213 OS=Mus musculus GN=Rnf213 PE=2
SV=1
Length = 5150
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 69 YQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVE 128
++ VV +H L+ Y+ E L ++ +LRK + + +M+ F + + +++LV+
Sbjct: 1648 WKTVVAQKRAEHFYLNFYTAEQL---VYLSSELRKPRPSEAALMMLSFIKGKCTVQDLVQ 1704
Query: 129 EVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFY------------ 176
ATS + Y LR++M + + L + GK ++ + Q+ Y
Sbjct: 1705 ---ATSACESKADRYCLREVMKKLPQQLLSEPSLMGKLQVIMMQSLVYMSAFLPHCLDLD 1761
Query: 177 -------DIKNLNDLPVSHNEFRKLQ--RPLT-----SPILPPTLAGAKLEADWGPLPTF 222
+ + PV + LQ +P S +LP LA ++A PLPTF
Sbjct: 1762 ALGRCLAHLATMGGTPVERPLPKGLQAGQPNLILCGHSEVLPAALA-IYMQAPRQPLPTF 1820
Query: 223 DEL 225
DE+
Sbjct: 1821 DEV 1823
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDH---RILSRYSNEMLELVIFALEDL 101
G ++W + DLR+ DH L+ A VV L V D + R LE V L
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKTTPRRRAWFLENV----RAL 57
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137
R++ + +G L + G + E +KA +V+A
Sbjct: 58 REAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 36 AAATSKGRS-GSAVIWFKQDLRVDDHLGLVAASKYQAVV-PLYVFDHRILSRYSNEM--L 91
AAA S R +V WF++ LR+ D+ L AA + A + +Y+ D + + +
Sbjct: 2 AAAASPPRGFCRSVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGINRW 61
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ +LEDL SL++ S L + G+ +V L +E T + E + E
Sbjct: 62 RFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSE 112
>sp|Q27152|DPOLA_OXYTR DNA polymerase alpha catalytic subunit OS=Oxytricha trifallax PE=3
SV=1
Length = 1513
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 131 KATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNE 190
KA EE + +R +M +D+ K P+I W+ + K ++P+ H E
Sbjct: 409 KARGALTVEEEKQQVRAVMMELDDIRKKRF-----PQISKWRCKPVNRKYAFEMPIQHGE 463
Query: 191 --FRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDEL 225
F K++ T P LP T+ G E +G + EL
Sbjct: 464 HQFLKIKYDSTMPPLPSTIQGNTFECIFGSTQSMLEL 500
>sp|Q4I1Q6|CRYD_GIBZE Putative cryptochrome DASH OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_08852 PE=3
SV=1
Length = 678
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 331 GASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEW 390
G ++T L +G I+ R +H E +KFE + FG+ + W
Sbjct: 274 GTEYSTKLSAFLAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLW 333
Query: 391 YWLMSLRSLRSNEGVYSTRIWRWNGYQ 417
M L + + + TR+++ +G++
Sbjct: 334 RDYMRLCTFK-----FRTRLFKIDGFK 355
>sp|A6Q747|SYA_SULNB Alanine--tRNA ligase OS=Sulfurovum sp. (strain NBC37-1) GN=alaS
PE=3 SV=1
Length = 857
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 125 ELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFY-----DIK 179
+L++E T+ F E + +++A++DE K ++GK + L +TPFY +
Sbjct: 442 KLLKEEFNTNEFVGYETQEVTTKVLALLDENFKKTDAINGKGWVLLEKTPFYAESGGQVG 501
Query: 180 NLNDLPVSHNEFRKLQRPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEE- 238
+ L + NE +++ T L L+ + G L DE+K V+ + ++E+
Sbjct: 502 DKGKLEI-RNEKLEIRVLDTKKFLDMNLSEVE-----GKLSVGDEVKAVVDPSRVEIEKH 555
Query: 239 -SWTLINNMSAETILTDKLSKLG 260
S T + + IL D +++ G
Sbjct: 556 HSATHLLHAGLRAILGDHIAQAG 578
>sp|P81831|CAPP1_CHLRE Phosphoenolpyruvate carboxylase 1 OS=Chlamydomonas reinhardtii
GN=Ppc1 PE=1 SV=2
Length = 974
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 26/110 (23%)
Query: 250 TILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTN-------------- 295
T++ D + +R L PR LD++ F G+ +GG +
Sbjct: 237 TVIFDVVPVFHRRVDTALEKLGLPRLPLDRALF--KFGSWMGGDRDGNPNVTAETTRDVV 294
Query: 296 --AVLNALQAYLRYLEGTVRD--------DWQELQEKLRNAESRDGASFA 335
A L A+ Y R +EG + D + +EL E+L AESRD A A
Sbjct: 295 VLARLEAVNVYFRQVEGLMFDLSIWRCSPEMKELAERLAAAESRDAARVA 344
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASK--YQAVVP---LYVFDHRILSRY--SNEMLELVIFAL 98
+ V WFK DLR+ D+ L AS+ +A VP LYV L + + ++ ++ L
Sbjct: 136 AVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTL 195
Query: 99 EDLRKSLKEQGSDLMI----RFGRVENVIRELVEEVKATSVFAEEEVE 142
E L+ L++ G L + + V I+EL++ A+ +F E E
Sbjct: 196 EVLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYE 243
>sp|P09514|MCAPS_TYYVF Minor capsid protein P3-RTD OS=Turnip yellows virus (isolate FL-1)
GN=ORF3/ORF5 PE=1 SV=2
Length = 670
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 204 PPTLAGAK--LEADWG--PLPTFDELKEFVNENPW 234
PPT +G L+ + G PLP +E+ +FV +NPW
Sbjct: 478 PPTASGGSDTLDVEEGGLPLPVEEEIPDFVGDNPW 512
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,520,102
Number of Sequences: 539616
Number of extensions: 6572743
Number of successful extensions: 18901
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 18851
Number of HSP's gapped (non-prelim): 64
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)