Query 014573
Match_columns 422
No_of_seqs 277 out of 1471
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 100.0 3.8E-54 1.3E-58 451.5 25.3 305 43-420 3-346 (537)
2 1np7_A DNA photolyase; protein 100.0 2.5E-53 8.4E-58 443.2 30.1 303 45-420 6-337 (489)
3 2j4d_A Cryptochrome 3, cryptoc 100.0 1.3E-52 4.4E-57 440.6 29.8 303 45-420 40-373 (525)
4 1owl_A Photolyase, deoxyribodi 100.0 4.6E-52 1.6E-56 432.8 29.3 302 43-420 1-331 (484)
5 1dnp_A DNA photolyase; DNA rep 100.0 5.3E-51 1.8E-55 423.2 22.8 291 46-420 2-323 (471)
6 3tvs_A Cryptochrome-1; circadi 100.0 6.2E-51 2.1E-55 427.8 21.7 315 45-420 4-359 (538)
7 2j07_A Deoxyribodipyrimidine p 100.0 9.7E-50 3.3E-54 408.3 29.8 278 46-420 3-292 (420)
8 2wq7_A RE11660P; lyase-DNA com 100.0 5.1E-50 1.8E-54 422.5 26.6 303 41-420 24-370 (543)
9 2e0i_A 432AA long hypothetical 100.0 2.5E-50 8.7E-55 414.2 18.8 272 46-420 2-291 (440)
10 1u3d_A Cryptochrome 1 apoprote 100.0 4E-49 1.4E-53 413.2 25.8 304 45-420 12-341 (509)
11 3umv_A Deoxyribodipyrimidine p 100.0 1.6E-45 5.5E-50 383.9 24.6 280 45-400 38-336 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 2.2E-44 7.5E-49 375.1 23.1 308 46-420 38-375 (482)
13 3zxs_A Cryptochrome B, rscryb; 99.9 1.4E-26 4.6E-31 239.3 13.5 297 46-420 16-358 (522)
14 3s3t_A Nucleotide-binding prot 92.8 0.76 2.6E-05 37.8 10.1 87 54-140 13-117 (146)
15 3dlo_A Universal stress protei 91.0 1.9 6.5E-05 36.4 10.7 92 45-140 25-126 (155)
16 3fg9_A Protein of universal st 89.8 3.4 0.00012 34.3 11.2 84 57-140 28-128 (156)
17 3tnj_A Universal stress protei 89.3 2.3 7.9E-05 35.0 9.7 87 54-140 14-118 (150)
18 3fdx_A Putative filament prote 89.3 3 0.0001 33.9 10.3 82 59-140 16-115 (143)
19 3hgm_A Universal stress protei 89.0 3.3 0.00011 33.8 10.3 83 58-140 14-119 (147)
20 2dum_A Hypothetical protein PH 86.7 2.6 8.8E-05 35.7 8.5 87 54-140 13-126 (170)
21 1mjh_A Protein (ATP-binding do 85.9 3.8 0.00013 34.2 9.1 87 54-140 13-129 (162)
22 2z08_A Universal stress protei 83.9 4.6 0.00016 32.6 8.5 79 59-140 15-108 (137)
23 3loq_A Universal stress protei 82.2 7.5 0.00026 36.0 10.2 104 22-140 150-260 (294)
24 1jmv_A USPA, universal stress 80.4 18 0.00061 29.0 10.9 82 59-140 15-111 (141)
25 3idf_A USP-like protein; unive 74.7 13 0.00045 29.7 8.4 80 59-140 14-110 (138)
26 1tq8_A Hypothetical protein RV 70.4 8.9 0.0003 32.3 6.5 83 58-140 29-128 (163)
27 3mt0_A Uncharacterized protein 69.0 19 0.00064 33.2 9.0 119 16-140 110-246 (290)
28 3olq_A Universal stress protei 63.5 91 0.0031 28.6 13.2 87 54-140 15-120 (319)
29 3mt0_A Uncharacterized protein 63.3 36 0.0012 31.1 9.8 76 54-140 15-98 (290)
30 1q77_A Hypothetical protein AQ 60.4 22 0.00074 28.4 6.8 86 54-140 12-118 (138)
31 2gm3_A Unknown protein; AT3G01 57.8 22 0.00077 29.8 6.7 45 96-140 87-133 (175)
32 3cis_A Uncharacterized protein 56.9 24 0.00081 32.8 7.2 121 16-140 143-276 (309)
33 3olq_A Universal stress protei 55.1 80 0.0028 29.0 10.7 119 16-140 132-275 (319)
34 3fvv_A Uncharacterized protein 54.5 16 0.00055 31.9 5.3 44 95-138 94-137 (232)
35 3loq_A Universal stress protei 51.2 53 0.0018 30.0 8.7 86 54-141 30-133 (294)
36 3rjz_A N-type ATP pyrophosphat 50.9 26 0.00088 32.2 6.1 91 61-156 19-115 (237)
37 3ab8_A Putative uncharacterize 45.6 60 0.002 29.1 7.9 105 16-139 131-242 (268)
38 3ab8_A Putative uncharacterize 40.6 68 0.0023 28.7 7.4 80 59-140 13-118 (268)
39 3cis_A Uncharacterized protein 40.4 80 0.0027 29.0 8.0 85 54-140 27-131 (309)
40 1b43_A Protein (FEN-1); nuclea 37.6 1.2E+02 0.0043 28.8 9.1 42 96-137 130-171 (340)
41 4gxt_A A conserved functionall 33.4 24 0.00081 34.7 3.1 45 94-138 222-272 (385)
42 3ij5_A 3-deoxy-D-manno-octulos 33.4 42 0.0014 29.7 4.5 39 101-139 84-122 (211)
43 2lnd_A De novo designed protei 33.0 87 0.003 23.7 5.4 61 96-160 38-103 (112)
44 2iel_A Hypothetical protein TT 31.4 1.7E+02 0.0058 24.4 7.5 72 96-171 58-134 (138)
45 3h75_A Periplasmic sugar-bindi 31.0 2.2E+02 0.0074 26.3 9.5 71 93-172 18-94 (350)
46 3mn1_A Probable YRBI family ph 29.5 44 0.0015 28.6 3.9 39 101-139 54-92 (189)
47 3qk7_A Transcriptional regulat 27.8 2.1E+02 0.0073 25.6 8.7 70 93-172 24-96 (294)
48 3mmz_A Putative HAD family hyd 27.6 91 0.0031 26.2 5.6 38 101-139 47-84 (176)
49 3n07_A 3-deoxy-D-manno-octulos 26.9 78 0.0027 27.4 5.1 37 103-139 62-98 (195)
50 2p9j_A Hypothetical protein AQ 26.5 95 0.0032 25.2 5.4 39 100-138 43-81 (162)
51 3e8m_A Acylneuraminate cytidyl 25.6 60 0.0021 26.6 4.0 39 101-139 39-77 (164)
52 1k1e_A Deoxy-D-mannose-octulos 25.2 80 0.0027 26.5 4.8 38 101-138 43-80 (180)
53 3gkn_A Bacterioferritin comigr 24.7 1.2E+02 0.004 24.6 5.7 40 95-134 55-94 (163)
54 3twe_A Alpha4H; unknown functi 24.0 55 0.0019 18.7 2.2 16 93-108 5-20 (27)
55 3n1u_A Hydrolase, HAD superfam 23.6 68 0.0023 27.5 4.1 38 102-139 55-92 (191)
56 3jy6_A Transcriptional regulat 23.4 3.7E+02 0.013 23.5 9.8 68 93-171 21-92 (276)
57 3j08_A COPA, copper-exporting 22.7 60 0.0021 34.1 4.1 44 98-141 462-505 (645)
58 3rfu_A Copper efflux ATPase; a 21.5 1.8E+02 0.0062 31.0 7.6 40 101-140 562-601 (736)
59 3ixr_A Bacterioferritin comigr 21.2 1.2E+02 0.0041 25.5 5.1 39 95-133 71-109 (179)
60 2yvq_A Carbamoyl-phosphate syn 21.0 3.3E+02 0.011 22.3 7.7 65 97-161 38-126 (143)
61 3p96_A Phosphoserine phosphata 20.9 1.9E+02 0.0065 27.9 7.1 42 97-138 260-301 (415)
62 4eze_A Haloacid dehalogenase-l 20.6 99 0.0034 29.1 4.8 44 96-139 182-225 (317)
63 2r8e_A 3-deoxy-D-manno-octulos 20.5 1.3E+02 0.0045 25.4 5.3 39 101-139 61-99 (188)
64 3egc_A Putative ribose operon 20.5 2.9E+02 0.0098 24.5 7.9 70 93-172 22-95 (291)
65 2l69_A Rossmann 2X3 fold prote 20.1 1.2E+02 0.0041 23.6 4.2 43 96-138 13-57 (134)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=3.8e-54 Score=451.48 Aligned_cols=305 Identities=17% Similarity=0.249 Sum_probs=235.0
Q ss_pred CCCeEEEEEcCCCCccCCHHHHHHHhc-CCeEEEEEEcCCccc-----------cCCHhHHHHHHHHHHHHHHHHHhcCC
Q 014573 43 RSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILS-----------RYSNEMLELVIFALEDLRKSLKEQGS 110 (422)
Q Consensus 43 ~~~~~L~Wfr~DLRl~DN~aL~~A~~~-~~vl~vfi~dp~~~~-----------~~~~~r~~Fl~esL~~L~~~L~~lg~ 110 (422)
|.+++||||||||||+||+||++|++. .+|+||||+||.++. ..|++|++||++||.+|+++|+++|+
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~ 82 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGS 82 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 447899999999999999999999987 689999999998764 25899999999999999999999999
Q ss_pred cEEEEeCCHHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCC-----CCCC
Q 014573 111 DLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL-----NDLP 185 (422)
Q Consensus 111 ~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~-----~~~p 185 (422)
+|+|+.|++.++|++|+++++|++|++|.+|+++++++|++|++.|++.|| +++.+++++|++|+++ +++|
T Consensus 83 ~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI----~~~~~~~~~L~~p~~v~~~~~~~~y 158 (537)
T 3fy4_A 83 RLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGV----EVFSPVSHTLFNPAHIIEKNGGKPP 158 (537)
T ss_dssp CCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTC----EEECCCCSSSSCHHHHHHHTSSSCC
T ss_pred ceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCC----eEEEecCCEEEchhhcccCCCCCCC
Confidence 999999999999999999999999999999999999999999999998887 9999999999999753 5699
Q ss_pred ccchhHHhccCCCC---CCC-CCC-CCCCCcc--cCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhh
Q 014573 186 VSHNEFRKLQRPLT---SPI-LPP-TLAGAKL--EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSK 258 (422)
Q Consensus 186 ~~ft~F~k~~~~~~---~pl-~~p-~lp~~~~--~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~ 258 (422)
+|||+|+|++.... .|+ +.| .+|+++. .+....+|+++++++...
T Consensus 159 ~vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~---------------------------- 210 (537)
T 3fy4_A 159 LSYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDD---------------------------- 210 (537)
T ss_dssp SSHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGG----------------------------
T ss_pred CccCHHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcHHhcCCCcc----------------------------
Confidence 99999999976542 232 222 2333221 011233444443321000
Q ss_pred hccccccCCCCCCCCccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCC--cchhhHHHHHhhhcccCCCCCCCCC
Q 014573 259 LGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGT--VRDDWQELQEKLRNAESRDGASFAT 336 (422)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~--~~~~Y~~~Rn~~r~~~t~~~~~~tS 336 (422)
... ....|+|||++|+++|+.||+ + .+..|++.||.+ ..++.++||
T Consensus 211 ------------------~~~------~~~~~~~Ge~~A~~~L~~Fl~----~~~~l~~Y~~~rd~p----~~~~~~~tS 258 (537)
T 3fy4_A 211 ------------------EQA------DWTPFRGGESEALKRLTKSIS----DKAWVANFEKPKGDP----SAFLKPATT 258 (537)
T ss_dssp ------------------GSS------CCCSCCCSHHHHHHHHHHHTC----CHHHHHTCCGGGCCT----TCCSSCSSC
T ss_pred ------------------ccc------ccCCCCccHHHHHHHHHHHHh----CchHHhhhcccccCc----cccCCCCCc
Confidence 000 002589999999999999983 3 488999887431 112468999
Q ss_pred CCchhhhcCCccHHHHHHHHHH-HHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCccce----
Q 014573 337 LFGPALCLGIISRRGVHYEAIK-FEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRS--NEGVYSTR---- 409 (422)
Q Consensus 337 ~LSPyLa~G~IS~R~i~~~l~~-~e~~~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~--~~~~~~~~---- 409 (422)
+|||||+|||||||+|++++.+ ++...+.+ .++.+ |++||+|||||++++..+++- ..++..+.
T Consensus 259 ~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~------~~~~~---f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w 329 (537)
T 3fy4_A 259 VMSPYLKFGCLSSRYFYQCLQNIYKDVKKHT------SPPVS---LLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPW 329 (537)
T ss_dssp CCHHHHHTTSSCHHHHHHHHHHHHHTTSCCC------CTTTS---HHHHHHHHHHHHHHHHTCTTTTSSTTCTTSCCCCC
T ss_pred cCCHHHhCCCcCHHHHHHHHHHHHhhccccc------ccHHH---HHHHHHHHHHHHHHHHHCcchhcccCChhhhcCCc
Confidence 9999999999999999999987 44322111 23333 899999999999999988762 22222222
Q ss_pred ------eeecCCccccc
Q 014573 410 ------IWRWNGYQIQV 420 (422)
Q Consensus 410 ------~w~w~~~~~~~ 420 (422)
+-+|+.|.|+|
T Consensus 330 ~~~~~~~~aW~~G~TG~ 346 (537)
T 3fy4_A 330 NEDHAMLAAWRDGKTGY 346 (537)
T ss_dssp BCCHHHHHHHHTTCSSC
T ss_pred hhhhHHHHHHHcCCCCC
Confidence 23799999987
No 2
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.5e-53 Score=443.17 Aligned_cols=303 Identities=22% Similarity=0.313 Sum_probs=238.9
Q ss_pred CeEEEEEcCCCCccCCHHHHHHHhc-CCeEEEEEEcCCccc-------cCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q 014573 45 GSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILS-------RYSNEMLELVIFALEDLRKSLKEQGSDLMIRF 116 (422)
Q Consensus 45 ~~~L~Wfr~DLRl~DN~aL~~A~~~-~~vl~vfi~dp~~~~-------~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~ 116 (422)
+++|||||+|||++||+||.+|++. .+|+||||+||.++. ..+++|++||++||.+|+++|+++|++|+|+.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 85 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTT 85 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4689999999999999999999987 689999999998764 36899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCC----CCCCccchhHH
Q 014573 117 GRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR 192 (422)
Q Consensus 117 G~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~----~~~p~~ft~F~ 192 (422)
|++.++|++|+++++|++|+++.+|+++++++|++|++.|.+.|| +++.+++++|++++++ +++|.+||+|+
T Consensus 86 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~ 161 (489)
T 1np7_A 86 GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGI----EAKGYWGSTLCHPEDLPFSIQDLPDLFTKFR 161 (489)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTC----EEEEECCSSSSCGGGSSSCGGGCCSSHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCC----eEEEecCCeeeCccccccCCCCCCchHHHHH
Confidence 999999999999999999999999999999999999999988887 9999999999999874 67899999999
Q ss_pred hccC-C---CCCCCCCC-CCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhccccccCC
Q 014573 193 KLQR-P---LTSPILPP-TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNL 267 (422)
Q Consensus 193 k~~~-~---~~~pl~~p-~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~~~ 267 (422)
|++. . +..|++.| .+++++.......+|++++++..
T Consensus 162 ~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------- 202 (489)
T 1np7_A 162 KDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQI--------------------------------------- 202 (489)
T ss_dssp HHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCC---------------------------------------
T ss_pred HHHHHhccCCCCCCCCcccccCccccccccCCCCHhhcCCC---------------------------------------
Confidence 9865 3 23455555 33332211111234443332110
Q ss_pred CCCCCCccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCCCCCCCCCchhhhcCCc
Q 014573 268 NNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGII 347 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~~~tS~LSPyLa~G~I 347 (422)
.. ... ....|+|||++|+++|+.||. ..+.+..|++.||. .++.++||+|||||++|||
T Consensus 203 ~~-------~~~------~~~~~~~Ge~~A~~~L~~Fl~--~~~~l~~Y~~~Rd~------~~~~~~tS~LSpyL~~G~l 261 (489)
T 1np7_A 203 NF-------DHR------SVLAFQGGETAGLARLQDYFW--HGDRLKDYKETRNG------MVGADYSSKFSPWLALGCL 261 (489)
T ss_dssp CC-------CTT------SSCCCCCSHHHHHHHHHHHHT--TSCCGGGHHHHTTC------CSSSTTSCCCHHHHHTTSS
T ss_pred Cc-------Ccc------ccCCCCCcHHHHHHHHHHHHh--cchhHhhhhhcccC------CccccCCcCcChhhcCCCC
Confidence 00 000 002489999999999999982 23689999999853 3568999999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCC--ccc----------eeeecCC
Q 014573 348 SRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGV--YST----------RIWRWNG 415 (422)
Q Consensus 348 S~R~i~~~l~~~e~~~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~~~~~--~~~----------~~w~w~~ 415 (422)
|||+|++++.+++.....+ .+ +..|++||+|||||++++.++++..+.+ ..+ .+-+|+.
T Consensus 262 Spr~v~~~~~~~~~~~~~~------~~---~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~d~~~~~aW~~ 332 (489)
T 1np7_A 262 SPRFIYQEVKRYEQERVSN------DS---THWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRS 332 (489)
T ss_dssp CHHHHHHHHHHHHHHTCCS------HH---HHHHHHHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhccccc------ch---HHHHHHHHHHHHHHHHHHHHCcchhhhhcCcccccCCCccCHHHHHHHHc
Confidence 9999999998877543222 22 3348999999999999999988744322 111 1347889
Q ss_pred ccccc
Q 014573 416 YQIQV 420 (422)
Q Consensus 416 ~~~~~ 420 (422)
|.|+|
T Consensus 333 G~TG~ 337 (489)
T 1np7_A 333 GQTGY 337 (489)
T ss_dssp TCSSC
T ss_pred CCCCC
Confidence 99987
No 3
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=1.3e-52 Score=440.64 Aligned_cols=303 Identities=26% Similarity=0.404 Sum_probs=236.1
Q ss_pred CeEEEEEcCCCCccCCHHHHHHHhc-CCeEEEEEEcCCccc--------cCCHhHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 014573 45 GSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILS--------RYSNEMLELVIFALEDLRKSLKEQGSDLMIR 115 (422)
Q Consensus 45 ~~~L~Wfr~DLRl~DN~aL~~A~~~-~~vl~vfi~dp~~~~--------~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~ 115 (422)
+++|+|||+|||++||+||.+|++. .+|+||||+||.++. ..+.+|++||++||.+|+++|+++|++|+|+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~ 119 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIR 119 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 5689999999999999999999876 689999999998653 2589999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcC--CCCCCceeEecCcccccCCCC----CCCCccch
Q 014573 116 FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS--LVDGKPKICLWQTPFYDIKNL----NDLPVSHN 189 (422)
Q Consensus 116 ~G~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~g--i~~~~~~~~~~~~~L~~~~~~----~~~p~~ft 189 (422)
.|++.++|++|+++++|++|+++.+|+++++++|++|++.|.+.| | +++.+++++|++++++ +++|++||
T Consensus 120 ~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i----~~~~~~~~~L~~p~~v~~~~g~~~~vft 195 (525)
T 2j4d_A 120 SGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNST----KLELIWGSTMYHKDDLPFDVFDLPDVYT 195 (525)
T ss_dssp ESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSC----EEEEECCSCSSCGGGSSSCGGGCCSSHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCce----EEEEecCCEEEccccccccCCCCcccHH
Confidence 999999999999999999999999999999999999999998777 5 8999999999998764 57899999
Q ss_pred hHHhccCC---CCCCCCCC-CCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhcccccc
Q 014573 190 EFRKLQRP---LTSPILPP-TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKR 265 (422)
Q Consensus 190 ~F~k~~~~---~~~pl~~p-~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~ 265 (422)
+|+|++.. +..|++.| .+|+++.......+|+++++++.
T Consensus 196 ~F~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~l~~l~~~------------------------------------- 238 (525)
T 2j4d_A 196 QFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVE------------------------------------- 238 (525)
T ss_dssp HHHHHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCCTTTTTCC-------------------------------------
T ss_pred HHHHHHHHhcCCCCCCCCccccCCccccccccCCCCHHHcCCC-------------------------------------
Confidence 99998643 33445444 33332110111223333322110
Q ss_pred CCCCCCCCccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCCCCCCCCCchhhhcC
Q 014573 266 NLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLG 345 (422)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~~~tS~LSPyLa~G 345 (422)
.. ... ....|+|||++|+++|+.||. +...+..|++.||. .++.++||+|||||+||
T Consensus 239 ---~~------~~~------~~~~~~~Ge~~A~~~L~~Fl~--~~~~l~~Y~~~Rd~------~~~~~~tS~LSPyL~~G 295 (525)
T 2j4d_A 239 ---PQ------EVT------RGMRFVGGESAGVGRVFEYFW--KKDLLKVYKETRNG------MLGPDYSTKFSPWLAFG 295 (525)
T ss_dssp ---CC------CCC------SEEEECCSHHHHHHHHHHHHT--TSCCGGGHHHHTTC------CSSSTTSCCCHHHHHTT
T ss_pred ---cc------ccc------ccCCCCCcHHHHHHHHHHHHh--hCchHhhhcccCCC------ccccccCCCcChhhcCC
Confidence 00 000 001489999999999999982 12479999999852 45789999999999999
Q ss_pred CccHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCc--cc----------eeeec
Q 014573 346 IISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVY--ST----------RIWRW 413 (422)
Q Consensus 346 ~IS~R~i~~~l~~~e~~~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~~~~~~--~~----------~~w~w 413 (422)
|||||+|++++.+++...+.+ .+ +..|++||+|||||++++.+++..++... .+ .+-+|
T Consensus 296 ~LSpR~v~~~~~~~~~~~~~~------~~---~~~f~~EL~WREf~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~aW 366 (525)
T 2j4d_A 296 CISPRFIYEEVQRYEKERVAN------NS---TYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESW 366 (525)
T ss_dssp SSCHHHHHHHHHHHHHHTCCS------HH---HHHHHHHHHHHHHHHHHHHHHGGGGTSTTTTTTCCCCCBCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhccccc------cc---HHHHHHHHHHHHHHHHHHHHcCchhhhccCchhhcCCCCCCHHHHHHH
Confidence 999999999999876543222 22 33489999999999999988876554322 11 13378
Q ss_pred CCccccc
Q 014573 414 NGYQIQV 420 (422)
Q Consensus 414 ~~~~~~~ 420 (422)
+.|.|+|
T Consensus 367 ~~G~TG~ 373 (525)
T 2j4d_A 367 RDAKTGY 373 (525)
T ss_dssp HTTCSSC
T ss_pred HcCCCCC
Confidence 8899987
No 4
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=4.6e-52 Score=432.81 Aligned_cols=302 Identities=20% Similarity=0.294 Sum_probs=234.0
Q ss_pred CCCeEEEEEcCCCCccCCHHHHHHHh-cCCeEEEEEEcCCccc--cCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEeCCH
Q 014573 43 RSGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRV 119 (422)
Q Consensus 43 ~~~~~L~Wfr~DLRl~DN~aL~~A~~-~~~vl~vfi~dp~~~~--~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~G~~ 119 (422)
|++++|||||+|||++||+||.+|++ .++|+||||+||.++. ..+.+|++||++||.+|+++|+++|++|+|+.|++
T Consensus 1 m~~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g~~ 80 (484)
T 1owl_A 1 MAAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDP 80 (484)
T ss_dssp --CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEESCH
T ss_pred CCccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 56789999999999999999999997 4789999999998764 36899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCC----CCCCccchhHHhcc
Q 014573 120 ENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQ 195 (422)
Q Consensus 120 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~----~~~p~~ft~F~k~~ 195 (422)
.++|++|+++++|++|++|.+++++++++|++|++.|.+.|| +++.+++++|++++++ +++|.+||+|+|++
T Consensus 81 ~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~ 156 (484)
T 1owl_A 81 QHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGI----RAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNW 156 (484)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTC----EEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCc----EEEEecCCEEEchhhhcccCCCCchhhHHHHHHH
Confidence 999999999999999999999999999999999999988887 9999999999999863 67899999999986
Q ss_pred CCC--CCCCCCC-CCCCCccc------CC-CCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhcccccc
Q 014573 196 RPL--TSPILPP-TLAGAKLE------AD-WGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKR 265 (422)
Q Consensus 196 ~~~--~~pl~~p-~lp~~~~~------~~-~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~ 265 (422)
... ..|++.| .++.+... .. ...+|+++.|+
T Consensus 157 ~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------------------------------- 197 (484)
T 1owl_A 157 QAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLG--------------------------------------- 197 (484)
T ss_dssp HHSCCCCCCCCCCSCCCCCHHHHHHHGGGCCSSCCCTGGGT---------------------------------------
T ss_pred HHhcCCCCCCCccccccccccccccccccccCCCCCHHHcC---------------------------------------
Confidence 432 2233333 22111000 00 00111111100
Q ss_pred CCCCCCCCccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCCCCCCCCCchhhhcC
Q 014573 266 NLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLG 345 (422)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~~~tS~LSPyLa~G 345 (422)
.+.. .. . .|+|||++|+++|+.|++ +.+..|++.|| .|+.++||+|||||+||
T Consensus 198 -----------~~~~---~~-~-~~~~Ge~~A~~~L~~Fl~----~~l~~Y~~~rd-------~p~~~~tS~LSpyL~~G 250 (484)
T 1owl_A 198 -----------FDWD---GG-F-PVEPGETAAIARLQEFCD----RAIADYDPQRN-------FPAEAGTSGLSPALKFG 250 (484)
T ss_dssp -----------CCCC---SC-C-SSCSSHHHHHHHHHHHHH----TGGGGHHHHTT-------CTTSCCSCCCHHHHHTT
T ss_pred -----------CCcc---cc-C-cCCCCHHHHHHHHHHHHH----HHHHHhccccC-------CCCccCCcCccHhHcCC
Confidence 0000 01 2 589999999999999996 68999999874 57889999999999999
Q ss_pred CccHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc--c----------eeeec
Q 014573 346 IISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYS--T----------RIWRW 413 (422)
Q Consensus 346 ~IS~R~i~~~l~~~e~~~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~~~~~~~--~----------~~w~w 413 (422)
|||||+|++++.++.....+. .....+++|++||+|||||++++..+++-.+.+.. + .+-+|
T Consensus 251 ~lSpr~v~~~~~~~~~~~~~~------~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~w~~d~~~~~aW 324 (484)
T 1owl_A 251 AIGIRQAWQAASAAHALSRSD------EARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAW 324 (484)
T ss_dssp SSCHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSCCSTGGGGCCCCCCHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcccccc------cccccHHHHHHHHHHHHHHHHHHHhCCccccccCChhhhcCCCcCCHHHHHHH
Confidence 999999999998754321000 00124567999999999999999998874332211 1 13478
Q ss_pred CCccccc
Q 014573 414 NGYQIQV 420 (422)
Q Consensus 414 ~~~~~~~ 420 (422)
+.|.|+|
T Consensus 325 ~~G~TG~ 331 (484)
T 1owl_A 325 TQAQTGY 331 (484)
T ss_dssp HTTCSSC
T ss_pred HcCCCCC
Confidence 8999987
No 5
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=5.3e-51 Score=423.15 Aligned_cols=291 Identities=17% Similarity=0.215 Sum_probs=227.9
Q ss_pred eEEEEEcCCCCccCCHHHHHHHh--cCCeEEEEEEcCCccc--cCCHhHHHHHHHHHHHHHHHHHhcCCcEEEE----eC
Q 014573 46 SAVIWFKQDLRVDDHLGLVAASK--YQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSLKEQGSDLMIR----FG 117 (422)
Q Consensus 46 ~~L~Wfr~DLRl~DN~aL~~A~~--~~~vl~vfi~dp~~~~--~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~----~G 117 (422)
++|||||||||++||+||.+|++ .++|+||||+||.++. ..+.+|+.||++||.+|+++|+++|++|+|+ .|
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g 81 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 81 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHH
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCC
Confidence 47999999999999999999998 5799999999998764 3689999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCC----CCCCccchhHHh
Q 014573 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK 193 (422)
Q Consensus 118 ~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~----~~~p~~ft~F~k 193 (422)
++.++|++|+++++|+.|++|.+++++++++|++|++.|.+ | +++.+++++|++++++ +++|.+||+|+|
T Consensus 82 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i----~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~ 155 (471)
T 1dnp_A 82 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--V----VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKN 155 (471)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--S----EEEEECCSSSSCTTSSCCTTSCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--c----EEEEecCCEEEchhhcccCCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999875 5 8999999999999863 578999999999
Q ss_pred ccCCC-----CCCCCCC-CCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhccccccCC
Q 014573 194 LQRPL-----TSPILPP-TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNL 267 (422)
Q Consensus 194 ~~~~~-----~~pl~~p-~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~~~ 267 (422)
++... +.|++.| .++. +. .....+|+ ++.
T Consensus 156 ~~~~~l~~~~p~~~~~p~~~~~-~~-~~~~~~~~---l~~---------------------------------------- 190 (471)
T 1dnp_A 156 AWLKRLREGMPECVAAPKVRSS-GS-IEPSPSIT---LNY---------------------------------------- 190 (471)
T ss_dssp HHHHHHHTCCCCCCCCCCCCTT-CC-CCCCCCCC---CCS----------------------------------------
T ss_pred HHHHhccccCCCCCCCccccCc-cc-ccCCCCcc---cCC----------------------------------------
Confidence 86421 2223333 1110 00 00001110 100
Q ss_pred CCCCCCccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCCCCCCCCCchhhhcCCc
Q 014573 268 NNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGII 347 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~~~tS~LSPyLa~G~I 347 (422)
+ .. ......|+|||++|+++|+.|++ +.+..|++.|| .|+.++||+|||||+||||
T Consensus 191 ~--------~~-----~~~~~~~~~Ge~~A~~~L~~Fl~----~~l~~Y~~~rd-------~p~~~~tS~LSpyL~~G~l 246 (471)
T 1dnp_A 191 P--------RQ-----SFDTAHFPVEEKAAIAQLRQFCQ----NGAGEYEQQRD-------FPAVEGTSRLSASLATGGL 246 (471)
T ss_dssp C--------CC-----CCCTTTSCCSHHHHHHHHHHHHH----THHHHHHHHTT-------CTTSCCSCCCHHHHHHTSS
T ss_pred C--------cc-----ccccccCCCCHHHHHHHHHHHHH----HHHHHhhhccC-------CcCccCCCCCCHhHcCCCc
Confidence 0 00 00012589999999999999996 67999999874 5788999999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-Ccc--ce--ee--------ecC
Q 014573 348 SRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEG-VYS--TR--IW--------RWN 414 (422)
Q Consensus 348 S~R~i~~~l~~~e~~~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~~~~-~~~--~~--~w--------~w~ 414 (422)
|||+|++++.++..+... .+ .+++|++||+|||||++++..+++-... +.. .. -| +|+
T Consensus 247 Spr~v~~~~~~~~~~~~~-------~~--~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~l~w~~d~~~~~aW~ 317 (471)
T 1dnp_A 247 SPRQCLHRLLAEQPQALD-------GG--AGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQ 317 (471)
T ss_dssp CHHHHHHHHHHHCGGGGG-------TS--TTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccc-------cc--cHHHHHHHHHHHHHHHHHHHhCCchhccCCcchhhhcCCCcCCHHHHHHHH
Confidence 999999999875432100 11 0345999999999999999998863322 111 11 36 889
Q ss_pred Cccccc
Q 014573 415 GYQIQV 420 (422)
Q Consensus 415 ~~~~~~ 420 (422)
.|.|+|
T Consensus 318 ~G~TG~ 323 (471)
T 1dnp_A 318 EGKTGY 323 (471)
T ss_dssp HTCSSC
T ss_pred hCCCCC
Confidence 999987
No 6
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=6.2e-51 Score=427.82 Aligned_cols=315 Identities=17% Similarity=0.229 Sum_probs=228.4
Q ss_pred CeEEEEEcCCCCccCCHHHHHHHhc-C---CeEEEEEEcCCccc--cCCHhHHHHHHHHHHHHHHHHHhc---CCcEEEE
Q 014573 45 GSAVIWFKQDLRVDDHLGLVAASKY-Q---AVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSLKEQ---GSDLMIR 115 (422)
Q Consensus 45 ~~~L~Wfr~DLRl~DN~aL~~A~~~-~---~vl~vfi~dp~~~~--~~~~~r~~Fl~esL~~L~~~L~~l---g~~L~v~ 115 (422)
+.+||||||||||+||+||.+|++. . +|+||||+||.++. ..|.+|++||++||.+|+++|+++ |++|+|+
T Consensus 4 ~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~ 83 (538)
T 3tvs_A 4 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVF 83 (538)
T ss_dssp CEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEE
T ss_pred CcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4689999999999999999999976 5 89999999999875 358999999999999999999999 9999999
Q ss_pred eCCHHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCC-----CCCCccchh
Q 014573 116 FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL-----NDLPVSHNE 190 (422)
Q Consensus 116 ~G~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~-----~~~p~~ft~ 190 (422)
.|++.++|++|+++++|++|++|++|++++++||++|++.|.+.|| .++.+++++|++|+++ +.+|.+|++
T Consensus 84 ~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi----~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~ 159 (538)
T 3tvs_A 84 EGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNI----DFVEKVSHTLWDPQLVIETNGGIPPLTYQM 159 (538)
T ss_dssp ESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSC----CCCEECCSSSSCTTHHHHHTTTSCCCSHHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCc----eEEEecCCEEEChhhcccCCCCCCCcchHH
Confidence 9999999999999999999999999999999999999999998887 9999999999999863 568999999
Q ss_pred HHhccCCCCC---CCCCCC---CCC--CcccC--C---CCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhh
Q 014573 191 FRKLQRPLTS---PILPPT---LAG--AKLEA--D---WGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLS 257 (422)
Q Consensus 191 F~k~~~~~~~---pl~~p~---lp~--~~~~~--~---~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~ 257 (422)
|++++..+.. |++.|. +.. .+... . ...+|++++++..
T Consensus 160 f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~----------------------------- 210 (538)
T 3tvs_A 160 FLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVY----------------------------- 210 (538)
T ss_dssp HHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCC-----------------------------
T ss_pred HHHHHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCC-----------------------------
Confidence 9988654422 233321 100 00000 0 0112222222110
Q ss_pred hhccccccCCCCCCCCccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCC-CCCCC
Q 014573 258 KLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDG-ASFAT 336 (422)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~-~~~tS 336 (422)
.. ... ......|+|||++|+++|+.|++......+..|.+.||. .++ .++||
T Consensus 211 -------------~~---~~~-----~~~~~~~~~Ge~~A~~~L~~Fl~~~~~~~l~~y~~~r~~------~~~~~~~tS 263 (538)
T 3tvs_A 211 -------------GD---NMG-----FLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQA------LPNIHDSPK 263 (538)
T ss_dssp -------------CC---CSS-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCCTTTT------SCCSSCCSC
T ss_pred -------------cc---ccc-----ccccCCCCCCHHHHHHHHHHHHHhhhhhhHhhhcccccC------cccccCCCc
Confidence 00 000 000125899999999999999931111236677776542 233 57999
Q ss_pred CCchhhhcCCccHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCC---------
Q 014573 337 LFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRS--NEGV--------- 405 (422)
Q Consensus 337 ~LSPyLa~G~IS~R~i~~~l~~~e~~~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~--~~~~--------- 405 (422)
+|||||++||||||+|++++.+.......+ ..-.|.....+.+|++||+|||||++++..++.- .-.+
T Consensus 264 ~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~ 342 (538)
T 3tvs_A 264 SMSAHLRFGCLSVRRFYWSVHDLFKNVQLR-ACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWA 342 (538)
T ss_dssp CCHHHHHTTSSCHHHHHHHHHHHTCSSSCC-CCCSSSCCTTTTTTHHHHHHHHHHHHHHHHSSCTTSSSSCSSCCCCCCC
T ss_pred CCCHHHhCCCcCHHHHHHHHHHHHhhhccc-ccccccccchHHHHHHHHHHHHHHHHHHHhCcchhhccCChhhhcCCcc
Confidence 999999999999999999997643211010 0000000011234899999999999999988751 1111
Q ss_pred --ccceeeecCCccccc
Q 014573 406 --YSTRIWRWNGYQIQV 420 (422)
Q Consensus 406 --~~~~~w~w~~~~~~~ 420 (422)
+.-.+-+|+.|.|+|
T Consensus 343 ~~~~~~~~aW~~G~TG~ 359 (538)
T 3tvs_A 343 KPNENLLQSWRLGQTGF 359 (538)
T ss_dssp CCCSSHHHHHHTTCSSC
T ss_pred ccCHHHHHHHHhCCCCC
Confidence 122234799999987
No 7
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=9.7e-50 Score=408.33 Aligned_cols=278 Identities=21% Similarity=0.226 Sum_probs=225.5
Q ss_pred eEEEEEcCCCCccCCHHHHHHHhcCCeEEEEEEcCCccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHH
Q 014573 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRE 125 (422)
Q Consensus 46 ~~L~Wfr~DLRl~DN~aL~~A~~~~~vl~vfi~dp~~~~~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~G~~~~~l~~ 125 (422)
++|+|||+|||++||+||.+|++.++|+||||+||.++.. +.+|+.||++||.+|+++|+++|++|+|+.|++.++|++
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~~~~v~~vfi~d~~~~~~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g~~~~~l~~ 81 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKT-TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPE 81 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTSCEEEEEEECHHHHSS-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred eEEEEeCCCCCccccHHHHHHHhCCCEEEEEEECCccccC-CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 5899999999999999999998666899999999987765 999999999999999999999999999999999999999
Q ss_pred HHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCCCCCCccchhHHhccCCCCCCCCCC
Q 014573 126 LVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPP 205 (422)
Q Consensus 126 l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~~~~p~~ft~F~k~~~~~~~pl~~p 205 (422)
|+++++|+.|++|.+++++++++|++|++.| || +++.+++++|+++++ +++|.+||+|+|++..+..|++.|
T Consensus 82 l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i----~~~~~~~~~l~~~~~-~~~~~~~t~f~k~~~~~~~p~~~p 153 (420)
T 2j07_A 82 AARRLKAKAVYALTSHTPYGRYRDGRVREAL---PV----PLHLLPAPHLLPPDL-PRAYRVYTPFSRLYRGAAPPLPPP 153 (420)
T ss_dssp HHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SS----CEEEECCCCSSCTTC-SSCCSSHHHHHTTCCCCCCCCCCC
T ss_pred HHHHcCCCEEEEecccChhHHHHHHHHHHHc---CC----eEEEeCCCEEEccCC-CCccccccHHHHHHhhccCCCCCc
Confidence 9999999999999999999999999999988 56 899999999999998 899999999999876222333322
Q ss_pred CCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhccccccCCCCCCCCccccCCcccccC
Q 014573 206 TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTD 285 (422)
Q Consensus 206 ~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (422)
. . ..+| +++.. ++. . . .
T Consensus 154 ~------~---~~~p-~~~~~----------------------------------------l~~--------~-~----~ 170 (420)
T 2j07_A 154 E------A---LPKG-PEEGE----------------------------------------IPR--------E-D----P 170 (420)
T ss_dssp S------S---CCCC-CCCCC----------------------------------------CCC--------C-C----C
T ss_pred c------c---cCCC-Ccccc----------------------------------------CCC--------c-c----c
Confidence 1 0 0111 00000 000 0 0 0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCCCCCCCCCchhhhcCCccHHHHHHHHHHHHHHhcC
Q 014573 286 KGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365 (422)
Q Consensus 286 ~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~~~tS~LSPyLa~G~IS~R~i~~~l~~~e~~~~~ 365 (422)
....|+|||++|+++|+.|++ +++..|++.|| .|+.++||+|||||++||||||+|++++.++.
T Consensus 171 ~~~~~~~Ge~~A~~~L~~Fl~----~~l~~Y~~~rd-------~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~----- 234 (420)
T 2j07_A 171 GLPLPEPGEEAALAGLRAFLE----AKLPRYAEERD-------RLDGEGGSRLSPYFALGVLSPRLAAWEAERRG----- 234 (420)
T ss_dssp SSCCCCCSHHHHHHHHHHHHH----HTGGGHHHHTT-------CTTCTTSCCCHHHHHTTSSCHHHHHHHHHHHC-----
T ss_pred ccccCCCcHHHHHHHHHHHHH----HHHhhhhhccC-------CCCccCCCCcchhhcCCccCHHHHHHHHHHHh-----
Confidence 012589999999999999996 67999999984 57789999999999999999999999997643
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc------------ceeeecCCccccc
Q 014573 366 GFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYS------------TRIWRWNGYQIQV 420 (422)
Q Consensus 366 n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~~~~~~~------------~~~w~w~~~~~~~ 420 (422)
. ..+++|++||+|||||++++..+++-.+.+.. -.+-+|+.|.|+|
T Consensus 235 ~---------~~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~~~~~~l~w~~d~~~~~~w~~G~TG~ 292 (420)
T 2j07_A 235 G---------EGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGV 292 (420)
T ss_dssp S---------HHHHHHHHHHHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCHHHHHHHHTTCSSC
T ss_pred c---------cCHHHHHHHHHHHHHHHHHHHhCCcccccccchhhhcCCcccCHHHHHHHHcCCCCc
Confidence 1 12346999999999999999998863222211 1134788899887
No 8
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=5.1e-50 Score=422.47 Aligned_cols=303 Identities=17% Similarity=0.241 Sum_probs=231.1
Q ss_pred CCCCCe-EEEEEcCCCCccCCHHHHHHHhc-CC------eEEEEEEcCCccc--cCCHhHHHHHHHHHHHHHHHHHhcCC
Q 014573 41 KGRSGS-AVIWFKQDLRVDDHLGLVAASKY-QA------VVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSLKEQGS 110 (422)
Q Consensus 41 ~~~~~~-~L~Wfr~DLRl~DN~aL~~A~~~-~~------vl~vfi~dp~~~~--~~~~~r~~Fl~esL~~L~~~L~~lg~ 110 (422)
+.|.+. +|||||+|||++||+||.+|++. .+ |+||||+||.++. ..+.+|+.||++||.+|+++|+++|+
T Consensus 24 ~~~~~~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~ 103 (543)
T 2wq7_A 24 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNS 103 (543)
T ss_dssp -CTTCEEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 445433 59999999999999999999875 34 9999999998875 36899999999999999999999999
Q ss_pred cEEEEeCCHHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCC-----CCCCC
Q 014573 111 DLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN-----LNDLP 185 (422)
Q Consensus 111 ~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~-----~~~~p 185 (422)
+|+|+.|++.++|++|+++++|++|+++.+++++++++|+.|++.|.+.|| +++.+++++|+++++ .+++|
T Consensus 104 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi----~~~~~~~~~l~~p~~v~~~~~g~~~ 179 (543)
T 2wq7_A 104 RLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGV----RVETHCSHTIYNPELVIAKNLGKAP 179 (543)
T ss_dssp CCEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTC----EEEEECCSSSSCHHHHHHHTTTSCC
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCC----EEEEecCCEEECccccccccCCCCC
Confidence 999999999999999999999999999999999999999999999988887 999999999999875 37889
Q ss_pred ccchhHHhccCCCCC--CCCCC-CCCCCcccC---------CCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHH
Q 014573 186 VSHNEFRKLQRPLTS--PILPP-TLAGAKLEA---------DWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILT 253 (422)
Q Consensus 186 ~~ft~F~k~~~~~~~--pl~~p-~lp~~~~~~---------~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~ 253 (422)
.+||+|+|++..+.. |++.| .++..+... ....+|++++++.
T Consensus 180 ~vft~F~~~~~~~~~~~p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~-------------------------- 233 (543)
T 2wq7_A 180 ITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVK-------------------------- 233 (543)
T ss_dssp CSHHHHHHHHTTSCCCCCCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCS--------------------------
T ss_pred ccHHHHHHHHHHccCCCCCCcchhccccccccccccccccccccCCCCHHHcCC--------------------------
Confidence 999999998754321 33322 121110000 0001111111100
Q ss_pred HHhhhhccccccCCCCCCCCccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCc--chhhHHHHHhhhcccCCCC
Q 014573 254 DKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTV--RDDWQELQEKLRNAESRDG 331 (422)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~--~~~Y~~~Rn~~r~~~t~~~ 331 (422)
+.. ......|+|||++|+++|+.||+ ++ +..|++.|| .|.
T Consensus 234 ------------------------~~~---~~~~~~~~~Ge~~A~~~L~~Fl~----~~~~l~~Y~~~Rd-------~p~ 275 (543)
T 2wq7_A 234 ------------------------RPE---ELGPNKFPGGETEALRRMEESLK----DEIWVARFEKPNT-------APN 275 (543)
T ss_dssp ------------------------CGG---GCCCCCSCCSHHHHHHHHHHHHT----CHHHHHHCCGGGS-------CSS
T ss_pred ------------------------Ccc---ccccCCCCCCHHHHHHHHHHHHh----CChhhhhhccccc-------Ccc
Confidence 000 00012589999999999999994 67 999999874 354
Q ss_pred --CCCCCCCchhhhcCCccHHHHHHHHHH-HHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCC--CCc
Q 014573 332 --ASFATLFGPALCLGIISRRGVHYEAIK-FEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNE--GVY 406 (422)
Q Consensus 332 --~~~tS~LSPyLa~G~IS~R~i~~~l~~-~e~~~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~~~--~~~ 406 (422)
.++||+|||||+|||||||+|++++.+ ++...+.+ .+..+ |++||+|||||++++..+++-.+ ++.
T Consensus 276 ~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~------~~~~~---f~~eL~WREf~~~~~~~~P~~~~~~~~~ 346 (543)
T 2wq7_A 276 SLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHS------QPPVS---LIGQLMWREFYYTVAAAEPNFDRMLGNV 346 (543)
T ss_dssp CSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCSSCC------CTTTS---HHHHHHHHHHHHHHHHTCTTTTSSTTCT
T ss_pred ccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhcccccc------ccHHH---HHHHHHHHHHHHHHHHhCCccccccCCh
Confidence 599999999999999999999999987 55422111 23333 89999999999999999886332 221
Q ss_pred cc----------eeeecCCccccc
Q 014573 407 ST----------RIWRWNGYQIQV 420 (422)
Q Consensus 407 ~~----------~~w~w~~~~~~~ 420 (422)
.+ .+-+|+.|.|+|
T Consensus 347 ~~~~~~w~~~~~~~~aW~~G~TG~ 370 (543)
T 2wq7_A 347 YCMQIPWQEHPDHLEAWTHGRTGY 370 (543)
T ss_dssp TCCCCCCCCCHHHHHHHHTTCSSC
T ss_pred HhhcCCCccCHHHHHHHHcCCCCC
Confidence 11 234789999987
No 9
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.5e-50 Score=414.21 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=220.1
Q ss_pred eEEEEEcCCCCccCCHHHHHHHhc-CCeEEEEEEcCCcccc---CCHhHHHHHHHHHHHHHHHHHhcCCcEEEEeCCHHH
Q 014573 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR---YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVEN 121 (422)
Q Consensus 46 ~~L~Wfr~DLRl~DN~aL~~A~~~-~~vl~vfi~dp~~~~~---~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~G~~~~ 121 (422)
.+|||||||||++||+||.+|++. .+|+||||+||.++.. .+.+|++||++||.+|+++|+++|++|+|+.|++.+
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~ 81 (440)
T 2e0i_A 2 DCIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFFGEAEK 81 (440)
T ss_dssp EEEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESCHHH
T ss_pred CEEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 389999999999999999999986 7899999999987652 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCCCCCCccchhHHhccCCC--C
Q 014573 122 VIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPL--T 199 (422)
Q Consensus 122 ~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~~~~p~~ft~F~k~~~~~--~ 199 (422)
+|++|++ +|+.|++|.+++++++++|++|++.|.+.|| +++.+++++|++++++ +|++||+|+|++... .
T Consensus 82 ~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~~~~~--~y~vftpf~~~~~~~~~~ 153 (440)
T 2e0i_A 82 VVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGI----EFKAYEDYLLTPKSLF--HHRNFTSFYNEVSKVKVR 153 (440)
T ss_dssp HHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTC----EEEEECCSCSSCGGGC--CCSSHHHHHHHHTTSCCC
T ss_pred HHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCc----eEEEecCCEEEccccc--CcccCcHHHHHHHHhccc
Confidence 9999999 9999999999999999999999999988777 9999999999999888 789999999987653 2
Q ss_pred CCCCCCCCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhccccccCCCCCCCCccccCC
Q 014573 200 SPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDK 279 (422)
Q Consensus 200 ~pl~~p~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 279 (422)
.| +. .+|.+. .+|..+.+.. + + ..
T Consensus 154 ~p-~~-~~~~~~------~~~~p~~~~~------------------------l---------------p--------~~- 177 (440)
T 2e0i_A 154 EP-ET-MEGSFD------VTDSSMNVDF------------------------L---------------L--------TF- 177 (440)
T ss_dssp CC-CC-CCCCBC------CCSSSBCGGG------------------------G---------------G--------GT-
T ss_pred cc-cc-CCCCcc------cCCCcchhhh------------------------C---------------C--------cc-
Confidence 10 10 011110 1111111100 0 0 00
Q ss_pred cccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCCCCCCCCCchhhhcCCccHHHHHHHHHHH
Q 014573 280 SFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKF 359 (422)
Q Consensus 280 ~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~~~tS~LSPyLa~G~IS~R~i~~~l~~~ 359 (422)
...++|||++|+++|+ |++ +.+..| +.|| .|+.++||+|||||++||||||+|++++
T Consensus 178 -------~~~~~~Ge~~A~~~L~-Fl~----~~l~~Y-~~rd-------~p~~~~tS~LSPyL~~G~lSpr~v~~~~--- 234 (440)
T 2e0i_A 178 -------KKIESPLFRGGRREGL-YLL----HRNVDF-RRRD-------YPAENNNYRLSPHLKFGTISMREAYYTQ--- 234 (440)
T ss_dssp -------CCCCCTTCCCSHHHHH-HHH----TCCCCG-GGTT-------CTTTTCCCCCHHHHHTTSSCHHHHHHHS---
T ss_pred -------ccCCCCCHHHHHHHHH-HHH----hhhhcC-CcCC-------CccccCCCCccHhHhCCCCCHHHHHHHh---
Confidence 0246899999999999 996 789999 8874 5788999999999999999999999988
Q ss_pred HHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc--ce----------eeecCCccccc
Q 014573 360 EKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYS--TR----------IWRWNGYQIQV 420 (422)
Q Consensus 360 e~~~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~~~~~~~--~~----------~w~w~~~~~~~ 420 (422)
.+ +++|++||+|||||++++..+++-.+.+.. .. +-+|+.|.|+|
T Consensus 235 -----~~-----------~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~W~~d~~~~~aW~~G~TG~ 291 (440)
T 2e0i_A 235 -----KG-----------KEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISWENNESYFEAWKEGRTGY 291 (440)
T ss_dssp -----TT-----------CHHHHHHHHHHHHHHHHHHHCGGGTTSCSSGGGGGCCCCCCHHHHHHHHHTCSSC
T ss_pred -----cC-----------HHHHHHHHHHHHHHHHHHHhCCCccccccchhhhcCCcccchHHHHHHHhCCCCC
Confidence 11 124899999999999999998874443221 11 34788888887
No 10
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=4e-49 Score=413.18 Aligned_cols=304 Identities=15% Similarity=0.165 Sum_probs=225.8
Q ss_pred CeEEEEEcCCCCccCCHHHHHHHhcCCeEEEEEEcCCcccc--CCHhHHHHHHHHHHHHHHHHHhcCCcEEEEe-CCHHH
Q 014573 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRF-GRVEN 121 (422)
Q Consensus 45 ~~~L~Wfr~DLRl~DN~aL~~A~~~~~vl~vfi~dp~~~~~--~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~-G~~~~ 121 (422)
+++|||||+|||++||+||.+|++.++|+||||+||..+.. .+..+..||++||.+|+++|+++|++|+|+. |++.+
T Consensus 12 ~~~l~WfrrDLRl~DN~aL~~A~~~~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~ 91 (509)
T 1u3d_A 12 GCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVA 91 (509)
T ss_dssp -CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHH
T ss_pred CcEEEEECCCCccchhHHHHHHHhCCCEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 57899999999999999999999877899999999987642 2556666999999999999999999999998 69999
Q ss_pred HHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCC----CCCCccchhHHhccCC
Q 014573 122 VIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRP 197 (422)
Q Consensus 122 ~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~----~~~p~~ft~F~k~~~~ 197 (422)
+|++|+++++|++|++|.++++++.++|.+|++.|.+.|| +++.+++++|++|+++ +++|.+||+|++++..
T Consensus 92 ~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r~~~~ 167 (509)
T 1u3d_A 92 SLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGI----AVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLS 167 (509)
T ss_dssp HHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTC----EEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCc----EEEEECCCEEEcCCcccCCCCCCchhHHHHHHHHHh
Confidence 9999999999999999999999999999999999988777 9999999999999763 7889999999998654
Q ss_pred CC----CCCCCC-CCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhccccccCCCCCCC
Q 014573 198 LT----SPILPP-TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHS 272 (422)
Q Consensus 198 ~~----~pl~~p-~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~~~~~~~~ 272 (422)
.. .|++.| .+++. ....++++++++. .... + ..
T Consensus 168 ~~~~~~~~~~~p~~~~~~-----~~~~~~~~~l~~~---------~~~~--~------~~-------------------- 205 (509)
T 1u3d_A 168 MPYDPESPLLPPKKIISG-----DVSKCVADPLVFE---------DDSE--K------GS-------------------- 205 (509)
T ss_dssp CSSCCCCCCCCCSCCCBT-----TGGGSSCCCCCCC---------CHHH--H------HH--------------------
T ss_pred ccCCCCCCCCCccccCcc-----ccCCCChhHhCCC---------cccc--c------ch--------------------
Confidence 21 112222 11100 0000111111100 0000 0 00
Q ss_pred CccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCCCCCCCCCchhhhcCCccHHHH
Q 014573 273 PRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGV 352 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~~~tS~LSPyLa~G~IS~R~i 352 (422)
.. .....|+|||++|+++|+.||+ +++..|++.|| .|+.++||+|||||+|||||||+|
T Consensus 206 ------~~----~~~~~~~~Ge~~A~~~L~~Fl~----~~l~~Y~~~Rd-------~p~~~~tS~LSPyL~~G~LSpR~v 264 (509)
T 1u3d_A 206 ------NA----LLARAWSPGWSNGDKALTTFIN----GPLLEYSKNRR-------KADSATTSFLSPHLHFGEVSVRKV 264 (509)
T ss_dssp ------HT----THHHHCCCSHHHHHHHHHHHHT----TGGGGTTTTTT-------CSSSTTSCCCHHHHHTTSSCHHHH
T ss_pred ------hh----hccccCCCcHHHHHHHHHHHHH----HHHHhhhhccC-------CCCCCCCCCCChhhccCCCCHHHH
Confidence 00 0001379999999999999994 78999999874 577789999999999999999999
Q ss_pred HHHHHHHHHH--hcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCc----c--------ceeeecCCccc
Q 014573 353 HYEAIKFEKE--RNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVY----S--------TRIWRWNGYQI 418 (422)
Q Consensus 353 ~~~l~~~e~~--~~~n~~~~~g~st~~~~~~~~ELlWReFy~~~~~~~~~~~~~~~----~--------~~~w~w~~~~~ 418 (422)
++++.+.... ...+ . .....++.|++||+|||||++++.++++....+. . -.+-+|+.|.|
T Consensus 265 ~~~~~~~~~~~~~~~~----~-~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~~~~~aW~~G~T 339 (509)
T 1u3d_A 265 FHLVRIKQVAWANEGN----E-AGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRT 339 (509)
T ss_dssp HHHHHHHHHHHHHHTC----H-HHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCS
T ss_pred HHHHHHHhhhhccccc----c-cccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcCChHHHHHHHcCCC
Confidence 9999764210 0000 0 0112345699999999999999999876332211 1 11246888988
Q ss_pred cc
Q 014573 419 QV 420 (422)
Q Consensus 419 ~~ 420 (422)
+|
T Consensus 340 G~ 341 (509)
T 1u3d_A 340 GY 341 (509)
T ss_dssp SC
T ss_pred CC
Confidence 87
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=1.6e-45 Score=383.93 Aligned_cols=280 Identities=14% Similarity=0.118 Sum_probs=205.9
Q ss_pred CeEEEEEcCCCCccCCHHHHHHHhc-----CCeEEEEEEcCCcc-ccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEeCC
Q 014573 45 GSAVIWFKQDLRVDDHLGLVAASKY-----QAVVPLYVFDHRIL-SRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGR 118 (422)
Q Consensus 45 ~~~L~Wfr~DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~-~~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~G~ 118 (422)
+.+||||||||||+||+||.+|++. .+|+||||+||.++ ...+.+|++||++||.+|+++|+++|++|+|+.|+
T Consensus 38 ~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL~dL~~~L~~lG~~L~v~~G~ 117 (506)
T 3umv_A 38 GPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGG 117 (506)
T ss_dssp SCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCEEEESSC
T ss_pred CEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecC
Confidence 4699999999999999999999862 58999999999843 24689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhh--hcCCCCCCceeEecCcccccCCCC--CCCCccchhHHhc
Q 014573 119 VENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA--KVSLVDGKPKICLWQTPFYDIKNL--NDLPVSHNEFRKL 194 (422)
Q Consensus 119 ~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~--~~gi~~~~~~~~~~~~~L~~~~~~--~~~p~~ft~F~k~ 194 (422)
|.++ ++|+++++|++|+++.++...++++|++|++.|+ +.|| +++.+++++|++++.+ +..+.+||.+.+.
T Consensus 118 p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi----~~~~~~~~~l~~p~~v~~~~~~~~~t~~~~~ 192 (506)
T 3umv_A 118 PAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGV----AVHQVDAHNVVPVWTASAKMEYSAKTFRGKV 192 (506)
T ss_dssp TTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTS----EEEEECCSCSSCHHHHCSSCCSSHHHHHHHH
T ss_pred hHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCe----EEEEeCCcEEECcccccCCCCCCccCHHHHH
Confidence 9999 9999999999999988887778899999999987 5566 9999999999999753 2334455544443
Q ss_pred cCCC---CCCCCCCCCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhccccccCCCCCC
Q 014573 195 QRPL---TSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQH 271 (422)
Q Consensus 195 ~~~~---~~pl~~p~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~~~~~~~ 271 (422)
+... ..+.| .+++.+.. ....|...++. .+....+.
T Consensus 193 ~~~~~~~~~~~p--~~~~~~~~--~~~~~~~~~~~-----------------------~l~~~~~~-------------- 231 (506)
T 3umv_A 193 SKVMDEYLVEFP--ELPAVVPW--DREQPEGVDWD-----------------------ALIARVCS-------------- 231 (506)
T ss_dssp HTTHHHHSCCCC--CCCCCCCC--CSCCCCCCCHH-----------------------HHHHHHHH--------------
T ss_pred HHhccccccCCC--CCCCcccc--ccccccccChh-----------------------hhhhhhcc--------------
Confidence 2211 11111 11111000 00011100000 00000000
Q ss_pred CCccccCCcccccCCCCCCCCcHHHHHHHH----HHHHHHhcCCcchhhHHHHHhhhcccCCCCC-CCCCCCchhhhcCC
Q 014573 272 SPRKRLDKSFFVTDKGNTVGGGTNAVLNAL----QAYLRYLEGTVRDDWQELQEKLRNAESRDGA-SFATLFGPALCLGI 346 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L----~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~-~~tS~LSPyLa~G~ 346 (422)
...++. ....++|||++|+++| +.|++ +.+..|++.|| .|.. ++||+|||||+|||
T Consensus 232 -----~~~~~~---~~~~~~~Ge~~A~~~L~~~~~~Fl~----~~l~~Y~~~Rd-------~p~~~~~tS~LSPyL~~G~ 292 (506)
T 3umv_A 232 -----EAENVP---EIDWCEPGEEAAIEALLGSKDGFLT----KRIKSYETDRN-------DPTKPRALSGLSPYLHFGH 292 (506)
T ss_dssp -----TSCCCC---CCCSSCCSHHHHHHHHHCTTTCHHH----HTGGGHHHHTT-------CTTCGGGSCCCHHHHHHTS
T ss_pred -----cccccc---ccCCCCCCHHHHHHHHHhhHHHHHH----hHHhhhccccC-------CccccCCCccCCHHHhCCC
Confidence 000000 0024689999999999 99995 67999999985 4555 89999999999999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHH-HHHHHHHhcCCC
Q 014573 347 ISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSM-EWYWLMSLRSLR 400 (422)
Q Consensus 347 IS~R~i~~~l~~~e~~~~~n~~~~~g~st~~~~~~~~ELlWR-eFy~~~~~~~~~ 400 (422)
||||+|++++.++... ....+++|++||+|| |||++++.++++
T Consensus 293 lS~r~v~~~~~~~~~~-----------~~~~~~~f~~eL~WRREf~~~~~~~~p~ 336 (506)
T 3umv_A 293 ISAQRCALEAKKCRHL-----------SPKSVDAFLEELVVRRELADNFCYYQPQ 336 (506)
T ss_dssp SCHHHHHHHHHHHGGG-----------SHHHHHHHHHHHTHHHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHHHhh-----------ccccHHHHHHHHHHhHHHHHHHHHhCcc
Confidence 9999999999875432 112346799999996 999999988774
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=2.2e-44 Score=375.06 Aligned_cols=308 Identities=16% Similarity=0.115 Sum_probs=216.7
Q ss_pred eEEEEEcCCCCccCCHHHHHHHhc-----CCeEEEEEEcCCccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEeCCHH
Q 014573 46 SAVIWFKQDLRVDDHLGLVAASKY-----QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVE 120 (422)
Q Consensus 46 ~~L~Wfr~DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~G~~~ 120 (422)
++|+|||+|||++||+||.+|++. .+|+||||+||.++. .+.+|+.||++||.+|+++|+++|++|+|+.|++.
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~-~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~ 116 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE-AGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPG 116 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG-SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc-cCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCHH
Confidence 689999999999999999999852 589999999998874 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCcccccCCCC--CCCCccchhHHhc---c
Q 014573 121 NVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL--NDLPVSHNEFRKL---Q 195 (422)
Q Consensus 121 ~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~~L~~~~~~--~~~p~~ft~F~k~---~ 195 (422)
++|++|+++++|+.|+++.++++++++++++|++.+ || +++.+++++|++++++ .+.|.+||.|++. +
T Consensus 117 ~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi----~~~~~~~~~l~~~~~~~~~~~~~v~tf~~~~~~~~ 189 (482)
T 2xry_A 117 EKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SI----PFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALL 189 (482)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CS----CEEEECCSSSSCHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CC----EEEEEeCCEEccccccccCCCCceecchHHHHHHH
Confidence 999999999999999999999999999999998877 55 8999999999998643 3448889866552 1
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccchHHHHHHHHhhhhccccccCCCCCCCCcc
Q 014573 196 RPLTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRK 275 (422)
Q Consensus 196 ~~~~~pl~~p~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~ 275 (422)
.....+.|.+ .+.+. ...+|....+... ...+.. ...... +... .. +.
T Consensus 190 ~~~~~~~p~~--~p~~~---~~~lp~~~~~~~~--------~~~l~~------~~~~~~-~~~~------~~------g~ 237 (482)
T 2xry_A 190 PEFLEEFPEL--EPNSV---TPELSAGAGMVET--------LSDVLE------TGVKAL-LPER------AL------LK 237 (482)
T ss_dssp HHHCCCCCCC--CCCSS---CCC---------C--------HHHHHH------HHHHHH-GGGC------CB------CT
T ss_pred HhhccccCCC--CCCCC---ccccCCccchhhh--------hhhhcc------cCCCCC-cchh------hh------cc
Confidence 1101111111 00000 0001111000000 000000 000000 0000 00 00
Q ss_pred ccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcccCCCCCCCCCCCchhhhcCCccHHHHHHH
Q 014573 276 RLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYE 355 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~~t~~~~~~tS~LSPyLa~G~IS~R~i~~~ 355 (422)
.... ......|+|||++|+++|+.||+ +++..|++.|| .|+.++||+|||||++||||||+|+++
T Consensus 238 ~~~~----~~~~~~~~~Ge~~A~~~L~~Fl~----~~l~~Y~~~Rd-------~p~~~~tS~LSPyL~~G~LSpR~v~~~ 302 (482)
T 2xry_A 238 NKDP----LFEPWHFEPGEKAAKKVMESFIA----DRLDSYGALRN-------DPTKNMLSNLSPYLHFGQISSQRVVLE 302 (482)
T ss_dssp TSCB----CCCTTSCCCSHHHHHHHHHHHHH----HTHHHHHHHTT-------CTTSCCSCCCHHHHHTTSSCHHHHHHH
T ss_pred cccc----ccccCCCCCcHHHHHHHHHHHHH----HHHhhhccccC-------CCCccCCCCcCHHHhCCccCHHHHHHH
Confidence 0000 00011489999999999999996 67999999984 577899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCChhhHHHHHHHHH-HHHHHHHHHhcCCC--CCCCC------------ccc-----eeeecCC
Q 014573 356 AIKFEKERNAGFLSPFGYSAATIAAAADAVC-SMEWYWLMSLRSLR--SNEGV------------YST-----RIWRWNG 415 (422)
Q Consensus 356 l~~~e~~~~~n~~~~~g~st~~~~~~~~ELl-WReFy~~~~~~~~~--~~~~~------------~~~-----~~w~w~~ 415 (422)
+.++.. .+ ..+++|++||+ |||||++++..+++ ++.+. ... ..-.|+.
T Consensus 303 ~~~~~~---~~---------~~~e~fl~ELi~WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~ 370 (482)
T 2xry_A 303 VEKAES---NP---------GSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEA 370 (482)
T ss_dssp HHHCCC---CT---------THHHHHHHHHTHHHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHT
T ss_pred HHHhhc---cc---------ccHHHHHHHHHHHHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHHh
Confidence 975321 01 23456999998 99999999988875 21111 111 2457999
Q ss_pred ccccc
Q 014573 416 YQIQV 420 (422)
Q Consensus 416 ~~~~~ 420 (422)
|.|+|
T Consensus 371 G~TG~ 375 (482)
T 2xry_A 371 GKTHD 375 (482)
T ss_dssp TCSSC
T ss_pred CCcCC
Confidence 99987
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=99.94 E-value=1.4e-26 Score=239.31 Aligned_cols=297 Identities=13% Similarity=0.050 Sum_probs=191.7
Q ss_pred eEEEEEcCCCCccCCHHHHHHHhcCCeEEEEEEcCCcc---ccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEe------
Q 014573 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRIL---SRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF------ 116 (422)
Q Consensus 46 ~~L~Wfr~DLRl~DN~aL~~A~~~~~vl~vfi~dp~~~---~~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~------ 116 (422)
+.+.|.=-|.=-.++++|..+-. + ..+|+++..... ..+...|..|++.||+.++++|++.|.+|+++.
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~~~-~-~~~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~ 93 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAADP-A-ADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDT 93 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTCCT-T-TCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTC
T ss_pred heeEEeecccCCCccchhhhcCC-C-CCEEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 35888888888888998854311 1 223444433221 245789999999999999999999999999998
Q ss_pred -CCHHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEecCc-ccccCCC------CCCCCccc
Q 014573 117 -GRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQT-PFYDIKN------LNDLPVSH 188 (422)
Q Consensus 117 -G~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~~~~-~L~~~~~------~~~~p~~f 188 (422)
|++.++|++++++++++.|+++ +|++.+++++|++. || ++..+++. .|..+++ .++++.++
T Consensus 94 ~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi----~v~~~~~~~fL~~~~e~~~~~~~~k~~~me 162 (522)
T 3zxs_A 94 GPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PL----PVRFLPDDRFLCPADEFARWTEGRKQLRME 162 (522)
T ss_dssp CSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SS----CEEEECCCCSSSCHHHHHHHHTTCSSCCHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CC----cEEEeCCCCcccCHHHHHHhhcCCCCeEee
Confidence 9999999999999999999998 78888888888743 55 88888875 6777664 35777774
Q ss_pred hhHHhccC-------CCCCCC--------------CCC-CCCCCcccCCCCCCCChhhhhhhhcCCCccchhhhhhhccc
Q 014573 189 NEFRKLQR-------PLTSPI--------------LPP-TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNM 246 (422)
Q Consensus 189 t~F~k~~~-------~~~~pl--------------~~p-~lp~~~~~~~~~~ip~~~~L~~~~~~~~~~~~~~~~~~g~~ 246 (422)
+|+|.+. .-..|+ |.+ .+|.++ ...|+ ++. .
T Consensus 163 -~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~-----~~~~d--~~~-------------------~ 215 (522)
T 3zxs_A 163 -WFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPL-----RFEPD--AEV-------------------R 215 (522)
T ss_dssp -HHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCC-----CCCCC--HHH-------------------H
T ss_pred -HHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCC-----CCCCc--hhH-------------------H
Confidence 8888542 111121 111 111100 00011 000 0
Q ss_pred hHHHHHHHHhhhhccccccCCCCCCCCccccCCcccccCCCCCCCCcHHHHHHHHHHHHHHhcCCcchhhHHHHHhhhcc
Q 014573 247 SAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNA 326 (422)
Q Consensus 247 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~Al~~L~~fl~~~~~~~~~~Y~~~Rn~~r~~ 326 (422)
+....+++... ... |. .....|++||.+|+++|+.|+. +++..|++.||.+
T Consensus 216 ~v~~~v~~~~~---------~~~----G~---------~~~~~~~~ge~~A~~~L~~Fl~----~rl~~Y~~~rD~~--- 266 (522)
T 3zxs_A 216 AVLDLVEARFP---------RHF----GR---------LRPFHWATDRAEALRALDHFIR----ESLPRFGDEQDAM--- 266 (522)
T ss_dssp HHHHHHHHHCT---------TSS----SC---------CCSCCCCCSHHHHHHHHHHHHH----HTGGGTTTTTTCC---
T ss_pred HHHHHHHHhcc---------CCc----Cc---------cccCCCCCCHHHHHHHHHHHHH----hhhhhhhhhccCc---
Confidence 01111211100 000 00 0012589999999999999995 6899999887432
Q ss_pred cCCC-CCCCCCCCchhhhcCCccHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHH-HHHHHHHHHhcCCCCCCC
Q 014573 327 ESRD-GASFATLFGPALCLGIISRRGVHYEAIKFEKERNAGFLSPFGYSAATIAAAADAVC-SMEWYWLMSLRSLRSNEG 404 (422)
Q Consensus 327 ~t~~-~~~~tS~LSPyLa~G~IS~R~i~~~l~~~e~~~~~n~~~~~g~st~~~~~~~~ELl-WReFy~~~~~~~~~~~~~ 404 (422)
..+ +..+||+|||||++||||||+|++++.+...+.. .....++.|++||+ |||||+++...++..++.
T Consensus 267 -~~~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~--------~~~~~~e~firellgWREF~~~l~~~~~P~~~~ 337 (522)
T 3zxs_A 267 -LADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGR--------APLNAVEGFIRQILGWREYVRGIWTLSGPDYIR 337 (522)
T ss_dssp -BTTBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHTHHHHHHHHHHHHGGGGGG
T ss_pred -ccCCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcC--------CchhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 122 2347999999999999999999999976332211 11234456999997 999999988664322221
Q ss_pred -----CccceeeecCCccccc
Q 014573 405 -----VYSTRIWRWNGYQIQV 420 (422)
Q Consensus 405 -----~~~~~~w~w~~~~~~~ 420 (422)
...--.+.|..|.|+|
T Consensus 338 ~n~~~~~~~l~~~~w~G~TG~ 358 (522)
T 3zxs_A 338 SNGLGHSAALPPLYWGKPTRM 358 (522)
T ss_dssp CCTTCCCBCCCGGGGTCCCSC
T ss_pred cccccccccchHHHhcCCCCC
Confidence 1111112333899987
No 14
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=92.81 E-value=0.76 Score=37.83 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=60.4
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEEcCCccccCC---------HhHHHHHHHHHHHHHHHHHhcCC---cEEEEe
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVFDHRILSRYS---------NEMLELVIFALEDLRKSLKEQGS---DLMIRF 116 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~~---------~~r~~Fl~esL~~L~~~L~~lg~---~L~v~~ 116 (422)
|.--....||..|+.. ..|..++++++......+ .....-..+.|.++.+.+.+.|+ ...+..
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 92 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEISY 92 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEec
Confidence 4444456778777653 578899998875432111 11223344567777778877777 567788
Q ss_pred CCHHHHHHH-HHHHhCccEEEEccc
Q 014573 117 GRVENVIRE-LVEEVKATSVFAEEE 140 (422)
Q Consensus 117 G~~~~~l~~-l~~~~~~~~V~~~~~ 140 (422)
|++.+.|.+ .+++.+++.|+.-..
T Consensus 93 g~~~~~I~~~~a~~~~~dliV~G~~ 117 (146)
T 3s3t_A 93 GIPKHTIEDYAKQHPEIDLIVLGAT 117 (146)
T ss_dssp ECHHHHHHHHHHHSTTCCEEEEESC
T ss_pred CChHHHHHHHHHhhcCCCEEEECCC
Confidence 999999999 999999999888644
No 15
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=91.05 E-value=1.9 Score=36.36 Aligned_cols=92 Identities=14% Similarity=-0.010 Sum_probs=63.6
Q ss_pred CeEEEEEcCCC-CccCCHHHHHHHhc-----CCeEEEEEEcCCccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEE----
Q 014573 45 GSAVIWFKQDL-RVDDHLGLVAASKY-----QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMI---- 114 (422)
Q Consensus 45 ~~~L~Wfr~DL-Rl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v---- 114 (422)
+.+|+=. |. --....||..|+.. .+|..++|.++... .......-..+.|.++.+.+++.|++..+
T Consensus 25 ~~ILv~v--D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v 100 (155)
T 3dlo_A 25 MPIVVAV--DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR--TKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLV 100 (155)
T ss_dssp CCEEEEC--CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT--SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CeEEEEE--CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc--ccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 3444443 55 44556677777643 57999999886432 12223334556788888888888987643
Q ss_pred EeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 115 RFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 115 ~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
..|+|.+.|.+.+++.+++.|+.-..
T Consensus 101 ~~G~~~~~I~~~a~~~~~DLIV~G~~ 126 (155)
T 3dlo_A 101 RGKEPPDDIVDFADEVDAIAIVIGIR 126 (155)
T ss_dssp SSSCHHHHHHHHHHHTTCSEEEEECC
T ss_pred cCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 34999999999999999999887643
No 16
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=89.85 E-value=3.4 Score=34.32 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=58.0
Q ss_pred ccCCHHHHHHHhc-----CCeEEEEEEcCCccccC---C----HhHHHHHHHHHHHHHHHHHhcCC---cEEEEe-CCHH
Q 014573 57 VDDHLGLVAASKY-----QAVVPLYVFDHRILSRY---S----NEMLELVIFALEDLRKSLKEQGS---DLMIRF-GRVE 120 (422)
Q Consensus 57 l~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~---~----~~r~~Fl~esL~~L~~~L~~lg~---~L~v~~-G~~~ 120 (422)
-....+|..|+.. ..|..++|+++...... . ....+-..+.|.++.+.+++.|+ ...+.. |++.
T Consensus 28 ~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~ 107 (156)
T 3fg9_A 28 TSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVD 107 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHH
Confidence 3445667777643 67999999987532111 1 11223445667777778888887 346678 9999
Q ss_pred HHHHHH-HHHhCccEEEEccc
Q 014573 121 NVIREL-VEEVKATSVFAEEE 140 (422)
Q Consensus 121 ~~l~~l-~~~~~~~~V~~~~~ 140 (422)
+.|.+. +++.+++.|+.-..
T Consensus 108 ~~I~~~~a~~~~~DlIV~G~~ 128 (156)
T 3fg9_A 108 DVILEQVIPEFKPDLLVTGAD 128 (156)
T ss_dssp HHHHHTHHHHHCCSEEEEETT
T ss_pred HHHHHHHHHhcCCCEEEECCC
Confidence 999998 99999999888654
No 17
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=89.31 E-value=2.3 Score=35.03 Aligned_cols=87 Identities=10% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEEcCCcc-----cc-----CCHhHHHHHHHHHHHHHHHHHhcCC---cEEEE
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVFDHRIL-----SR-----YSNEMLELVIFALEDLRKSLKEQGS---DLMIR 115 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~-----~~-----~~~~r~~Fl~esL~~L~~~L~~lg~---~L~v~ 115 (422)
|.--....||..|+.. .+|..++|+++... .. ..........+..+.|++-.++.|+ ...+.
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLV 93 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEe
Confidence 3333446677777643 67889999886422 00 0111222333334444444444464 47888
Q ss_pred eCCHHHHHHHHHHHhCccEEEEccc
Q 014573 116 FGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 116 ~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.|++.+.|.+.+++.+++.|+.-..
T Consensus 94 ~g~~~~~I~~~a~~~~~dliV~G~~ 118 (150)
T 3tnj_A 94 WGEPREEIIRIAEQENVDLIVVGSH 118 (150)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEEEC
T ss_pred cCCHHHHHHHHHHHcCCCEEEEecC
Confidence 9999999999999999998887643
No 18
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=89.28 E-value=3 Score=33.94 Aligned_cols=82 Identities=16% Similarity=0.027 Sum_probs=55.8
Q ss_pred CCHHHHHHHhc-----CCeEEEEEEcCCccc-cC-------CHhHHHHHHHHHHHHHHHHHhcCC-----cEEEEeCCHH
Q 014573 59 DHLGLVAASKY-----QAVVPLYVFDHRILS-RY-------SNEMLELVIFALEDLRKSLKEQGS-----DLMIRFGRVE 120 (422)
Q Consensus 59 DN~aL~~A~~~-----~~vl~vfi~dp~~~~-~~-------~~~r~~Fl~esL~~L~~~L~~lg~-----~L~v~~G~~~ 120 (422)
...+|..|+.. ..|..+++.++.... .. .........+.+..+++.+++.|. ...+..|++.
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~ 95 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPK 95 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecChH
Confidence 45677777643 578899998873210 00 011223444667777777777775 4567889999
Q ss_pred HHHHHHHHHhCccEEEEccc
Q 014573 121 NVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 121 ~~l~~l~~~~~~~~V~~~~~ 140 (422)
+.|.+.+++.+++.|++-..
T Consensus 96 ~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 96 DKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999988765
No 19
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=88.97 E-value=3.3 Score=33.78 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=57.7
Q ss_pred cCCHHHHHHHhc-----CCeEEEEEEcCCc-cc------------cCCHhHHHHHHHHHHHHHHHHHhcCCc-----EEE
Q 014573 58 DDHLGLVAASKY-----QAVVPLYVFDHRI-LS------------RYSNEMLELVIFALEDLRKSLKEQGSD-----LMI 114 (422)
Q Consensus 58 ~DN~aL~~A~~~-----~~vl~vfi~dp~~-~~------------~~~~~r~~Fl~esL~~L~~~L~~lg~~-----L~v 114 (422)
....||..|++. ..|..+++.++.. .. ........-..+.|.++.+.+++.|++ ..+
T Consensus 14 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 93 (147)
T 3hgm_A 14 GAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKVRAFV 93 (147)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEE
Confidence 344667777643 6788999988643 10 011222234456678888888888854 567
Q ss_pred EeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 115 RFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 115 ~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
..|++.+.|.+.+++.+++.|+.-..
T Consensus 94 ~~g~~~~~I~~~a~~~~~dliV~G~~ 119 (147)
T 3hgm_A 94 KGGRPSRTIVRFARKRECDLVVIGAQ 119 (147)
T ss_dssp EESCHHHHHHHHHHHTTCSEEEECSS
T ss_pred ecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 78999999999999999999988644
No 20
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=86.73 E-value=2.6 Score=35.67 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=56.9
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEEcCCccc----cCC--------------HhHHHHHHHHHHHHHHHHHhcCC
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVFDHRILS----RYS--------------NEMLELVIFALEDLRKSLKEQGS 110 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~----~~~--------------~~r~~Fl~esL~~L~~~L~~lg~ 110 (422)
|.--....||.+|+.. ..|..++|+++.... ... .....-..+.|.++.+.+...|+
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 92 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFR 92 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4333445678888754 468889998764321 000 11122234556667777776676
Q ss_pred c--E--EEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 111 D--L--MIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 111 ~--L--~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
+ . .+..|++.+.|.+.+++.+++.|+.-..
T Consensus 93 ~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~ 126 (170)
T 2dum_A 93 AKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSR 126 (170)
T ss_dssp CSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred ceeeeeEEecCChHHHHHHHHHHcCCCEEEECCC
Confidence 5 3 5678999999999999999999888654
No 21
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=85.91 E-value=3.8 Score=34.18 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=56.6
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEEcCC-----ccccCC-------Hh-----------HHHHHHHHHHHHHHHH
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVFDHR-----ILSRYS-------NE-----------MLELVIFALEDLRKSL 105 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~-----~~~~~~-------~~-----------r~~Fl~esL~~L~~~L 105 (422)
|.--....||.+|++. ..|..++|+++. .....+ +. ...-..+.|.++.+.+
T Consensus 13 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (162)
T 1mjh_A 13 DFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92 (162)
T ss_dssp CSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455688888764 468889998764 110110 10 0112334566777777
Q ss_pred HhcCCc--EEEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 106 KEQGSD--LMIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 106 ~~lg~~--L~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
...|++ ..+..|++.+.|.+.+++.+++.|+.-..
T Consensus 93 ~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~ 129 (162)
T 1mjh_A 93 EDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSH 129 (162)
T ss_dssp HHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCC
Confidence 777876 45678999999999999999999887654
No 22
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=83.91 E-value=4.6 Score=32.64 Aligned_cols=79 Identities=16% Similarity=0.072 Sum_probs=46.5
Q ss_pred CCHHHHHHHhc-----CCeEEEEEEcCCcc--ccCCHh-----HHHHHHHHHHHHHHHHHhcCC---cEEEEeCCHHHHH
Q 014573 59 DHLGLVAASKY-----QAVVPLYVFDHRIL--SRYSNE-----MLELVIFALEDLRKSLKEQGS---DLMIRFGRVENVI 123 (422)
Q Consensus 59 DN~aL~~A~~~-----~~vl~vfi~dp~~~--~~~~~~-----r~~Fl~esL~~L~~~L~~lg~---~L~v~~G~~~~~l 123 (422)
...||..|+.. .+|..+++.++... ....+. ...-..+.|.++.+. .|+ ...+..|++.+.|
T Consensus 15 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~g~~~~~I 91 (137)
T 2z08_A 15 ARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL---TGVPKEDALLLEGVPAEAI 91 (137)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH---HCCCGGGEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH---cCCCccEEEEEecCHHHHH
Confidence 34567666543 57888999875321 100010 011112223333222 465 5678899999999
Q ss_pred HHHHHHhCccEEEEccc
Q 014573 124 RELVEEVKATSVFAEEE 140 (422)
Q Consensus 124 ~~l~~~~~~~~V~~~~~ 140 (422)
.+.+++.+++.|+.-..
T Consensus 92 ~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 92 LQAARAEKADLIVMGTR 108 (137)
T ss_dssp HHHHHHTTCSEEEEESS
T ss_pred HHHHHHcCCCEEEECCC
Confidence 99999999999888654
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=82.20 E-value=7.5 Score=36.01 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=69.2
Q ss_pred ccccccceeeeccccccccCCCCCeEEEEEcCCCCccCCHHHHHHHhc-----CCeEEEEEEcCCccccCCHhHHHHHHH
Q 014573 22 LRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKY-----QAVVPLYVFDHRILSRYSNEMLELVIF 96 (422)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~Wfr~DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~~~~r~~Fl~e 96 (422)
++.-..-+++|++....+... ..+++=+ |.--....+|..|... .+|..+++.++.. -.+
T Consensus 150 l~~~~~PVlvv~~~~~~~~~~--~~Ilv~~--d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----------~~~ 214 (294)
T 3loq_A 150 LHDSKVPVYIFKHDMVVNSLF--DRVLVAY--DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----------KTA 214 (294)
T ss_dssp HHHCSSCEEEECCCTTTTCTT--SEEEEEC--CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----------CHH
T ss_pred HhcCCCCEEEecCccccCccC--CEEEEEE--CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----------HHH
Confidence 343344466677665321222 3444433 5555566778777643 4688888887643 124
Q ss_pred HHHHHHHHHHhcCCc--EEEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 97 ALEDLRKSLKEQGSD--LMIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 97 sL~~L~~~L~~lg~~--L~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.++++.+.|++.|++ ..+..|++.+.|.+++++.+++.|+.-..
T Consensus 215 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~ 260 (294)
T 3loq_A 215 DLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSR 260 (294)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCC
Confidence 577788888888876 45667999999999999999998887654
No 24
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=80.36 E-value=18 Score=28.99 Aligned_cols=82 Identities=10% Similarity=0.041 Sum_probs=48.9
Q ss_pred CCHHHHHHHhc-----CCeEEEEEEcC--CccccCC-HhHHHH----HHHHHHHHHHHHHhcCCc---EEEEeCCHHHHH
Q 014573 59 DHLGLVAASKY-----QAVVPLYVFDH--RILSRYS-NEMLEL----VIFALEDLRKSLKEQGSD---LMIRFGRVENVI 123 (422)
Q Consensus 59 DN~aL~~A~~~-----~~vl~vfi~dp--~~~~~~~-~~r~~F----l~esL~~L~~~L~~lg~~---L~v~~G~~~~~l 123 (422)
...||..|+.. .+|..+++.++ ....... ..-..+ .-+....|++-+++.|++ ..+..|++.+.|
T Consensus 15 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I 94 (141)
T 1jmv_A 15 SPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVL 94 (141)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEEEEEECHHHHH
T ss_pred hHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCHHHHH
Confidence 34677777643 57888888843 2111110 000000 012223333444455664 467789999999
Q ss_pred HHHHHHhCccEEEEccc
Q 014573 124 RELVEEVKATSVFAEEE 140 (422)
Q Consensus 124 ~~l~~~~~~~~V~~~~~ 140 (422)
.+.+++.+++.|+.-..
T Consensus 95 ~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 95 SDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp HHHHHHTTCCEEEEEEC
T ss_pred HHHHHhcCCCEEEEeCC
Confidence 99999999999888766
No 25
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=74.69 E-value=13 Score=29.72 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=52.6
Q ss_pred CCHHHHHHHhc------CCeEEEEEEcCCccccC-C-------HhHH-HHHHHHHHHHHHHHHhcCCc--EEEEeCCHHH
Q 014573 59 DHLGLVAASKY------QAVVPLYVFDHRILSRY-S-------NEML-ELVIFALEDLRKSLKEQGSD--LMIRFGRVEN 121 (422)
Q Consensus 59 DN~aL~~A~~~------~~vl~vfi~dp~~~~~~-~-------~~r~-~Fl~esL~~L~~~L~~lg~~--L~v~~G~~~~ 121 (422)
...+|..|+.. ..|..+++.++...... + .... .-..+.|.++.+.+.+.|++ ..+..|++.+
T Consensus 14 s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~ 93 (138)
T 3idf_A 14 CERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGEPVE 93 (138)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEESCHHH
T ss_pred HHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCChHH
Confidence 34566666431 46888999887542110 0 0011 33345677777888877776 5778899999
Q ss_pred HHHHHHHHhCccEEEEccc
Q 014573 122 VIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 122 ~l~~l~~~~~~~~V~~~~~ 140 (422)
.|.+.++ +++.|+.-..
T Consensus 94 ~I~~~a~--~~dliV~G~~ 110 (138)
T 3idf_A 94 MVLEEAK--DYNLLIIGSS 110 (138)
T ss_dssp HHHHHHT--TCSEEEEECC
T ss_pred HHHHHHh--cCCEEEEeCC
Confidence 9999998 8998887643
No 26
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=70.37 E-value=8.9 Score=32.32 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=50.7
Q ss_pred cCCHHHHHHHhc----CCeEEE--EEEcCCcc-ccCC-------HhHHHHHHHHHHHHHHHHHhcCCc---EEEEeCCHH
Q 014573 58 DDHLGLVAASKY----QAVVPL--YVFDHRIL-SRYS-------NEMLELVIFALEDLRKSLKEQGSD---LMIRFGRVE 120 (422)
Q Consensus 58 ~DN~aL~~A~~~----~~vl~v--fi~dp~~~-~~~~-------~~r~~Fl~esL~~L~~~L~~lg~~---L~v~~G~~~ 120 (422)
....||..|++. .+|..| +++++... .... ....+-..+.|.++.+.+.+.|++ ..+..|+|.
T Consensus 29 ~s~~al~~A~~lA~~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~ 108 (163)
T 1tq8_A 29 SSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPV 108 (163)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEEEECSSHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCHH
Confidence 334567666543 457777 77765322 1000 000001224566777778777876 567789999
Q ss_pred HHHHHHHHHhCccEEEEccc
Q 014573 121 NVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 121 ~~l~~l~~~~~~~~V~~~~~ 140 (422)
+.|.+++++.+++.|++-..
T Consensus 109 ~~I~~~a~~~~~DLIV~G~~ 128 (163)
T 1tq8_A 109 DALVNLADEEKADLLVVGNV 128 (163)
T ss_dssp HHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHhcCCCEEEECCC
Confidence 99999999999999888755
No 27
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=69.03 E-value=19 Score=33.18 Aligned_cols=119 Identities=15% Similarity=0.056 Sum_probs=66.8
Q ss_pred ccccccccccccceeeeccccccccCCCCCeEEEEEcCCCCcc-------CCHHHHHHHhc-----CCeEEEEEEcCCcc
Q 014573 16 SNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVD-------DHLGLVAASKY-----QAVVPLYVFDHRIL 83 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Wfr~DLRl~-------DN~aL~~A~~~-----~~vl~vfi~dp~~~ 83 (422)
+.-.+-++.-..-+++|++..+. .. +.+|+=. |.--. ...+|..|... ..+..++++++...
T Consensus 110 s~~~~vl~~~~~PVlvv~~~~~~--~~--~~Ilva~--D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~ 183 (290)
T 3mt0_A 110 PDDWKLLRFAPCPVLMTKTARPW--TG--GKILAAV--DVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPML 183 (290)
T ss_dssp HHHHHHHHHCSSCEEEECCCSCS--TT--CEEEEEE--CTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----
T ss_pred HHHHHHHhcCCCCEEEecCCCCC--CC--CeEEEEE--CCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccc
Confidence 33344445445556777755432 22 3444433 44444 35677777543 56888999886432
Q ss_pred ccCC---HhHHHHHHHHHHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 84 SRYS---NEMLELVIFALEDLRKSLKEQGS---DLMIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 84 ~~~~---~~r~~Fl~esL~~L~~~L~~lg~---~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.... ........+....|++-+++.|+ ...+..|++.+.|.+++++.+++.|++-..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~ 246 (290)
T 3mt0_A 184 SSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTV 246 (290)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECC
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCC
Confidence 1000 11111222334444444555565 468889999999999999999998887543
No 28
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=63.51 E-value=91 Score=28.60 Aligned_cols=87 Identities=15% Similarity=0.033 Sum_probs=56.9
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEEcCCccc---cCCHh-HH-------HHHHHHHHHHHHHHHhcCCcE--EEE
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVFDHRILS---RYSNE-ML-------ELVIFALEDLRKSLKEQGSDL--MIR 115 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~---~~~~~-r~-------~Fl~esL~~L~~~L~~lg~~L--~v~ 115 (422)
|.--....||.+|+.. .+|..++++++.... ..+.. .. .-..+.|+++.+.+...|++. .+.
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~ 94 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQIDIKVI 94 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 6666778889888753 578888887653211 01111 11 112345566666666677764 445
Q ss_pred -eCCHHHHHHHHHHHhCccEEEEccc
Q 014573 116 -FGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 116 -~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.|++.+.|.+.+++.+++.|+.-..
T Consensus 95 ~~g~~~~~i~~~a~~~~~DLiV~G~~ 120 (319)
T 3olq_A 95 WHNRPYEAIIEEVITDKHDLLIKMAH 120 (319)
T ss_dssp ECSCHHHHHHHHHHHHTCSEEEEEEB
T ss_pred ecCChHHHHHHHHHhcCCCEEEEecC
Confidence 7999999999999999998887544
No 29
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=63.32 E-value=36 Score=31.14 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=55.6
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEEcCCccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEE--E-eCCHHHHHHH
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMI--R-FGRVENVIRE 125 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v--~-~G~~~~~l~~ 125 (422)
|.--....+|.+|+.. .+|..+++.+|.. . . +.|+++.+.+...|++... . .|++.+.|.+
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~----~---~----~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 83 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD----H---S----AALNDLAQELREEGYSVSTNQAWKDSLHQTIIA 83 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC----C---H----HHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH----H---H----HHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHH
Confidence 6667778899888753 5688888887511 1 1 3356666777777877544 4 4789999999
Q ss_pred HHHHhCccEEEEccc
Q 014573 126 LVEEVKATSVFAEEE 140 (422)
Q Consensus 126 l~~~~~~~~V~~~~~ 140 (422)
.+++.+++.|+.-..
T Consensus 84 ~a~~~~~dliV~G~~ 98 (290)
T 3mt0_A 84 EQQAEGCGLIIKQHF 98 (290)
T ss_dssp HHHHHTCSEEEEECC
T ss_pred HHHhcCCCEEEEecc
Confidence 999999999888654
No 30
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=60.37 E-value=22 Score=28.41 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=51.8
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEE-cC--Ccc--c--cCC---HhH---HHHHHHHHHHHHHHH--HhcC-CcE
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVF-DH--RIL--S--RYS---NEM---LELVIFALEDLRKSL--KEQG-SDL 112 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~-dp--~~~--~--~~~---~~r---~~Fl~esL~~L~~~L--~~lg-~~L 112 (422)
|.--....||..|+.. ..|..++++ ++ ... . ... ... .+-..+.|.++ +.+ ...| +..
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 90 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLTGSTEIPGV 90 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHHSCCCCCCE
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhhccCCcceE
Confidence 3333456788887653 468888888 62 110 0 011 111 11122344445 442 3333 556
Q ss_pred EEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 113 MIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 113 ~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.+..|++.+.|.+.+++.+++.|++-..
T Consensus 91 ~~~~g~~~~~I~~~a~~~~~dliV~G~~ 118 (138)
T 1q77_A 91 EYRIGPLSEEVKKFVEGKGYELVVWACY 118 (138)
T ss_dssp EEECSCHHHHHHHHHTTSCCSEEEECSC
T ss_pred EEEcCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 7888999999999999999999988654
No 31
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=57.82 E-value=22 Score=29.77 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCcE--EEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 96 FALEDLRKSLKEQGSDL--MIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 96 esL~~L~~~L~~lg~~L--~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
+.|.++.+.+.+.|+.. .+..|++.+.|.+.+++.+++.|++-..
T Consensus 87 ~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~ 133 (175)
T 2gm3_A 87 HLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSR 133 (175)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 45666667777778764 5678999999999999999999888654
No 32
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=56.87 E-value=24 Score=32.78 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=65.2
Q ss_pred ccccccccccccceeeeccccccccCCCCCeEEEEEcCCCCccCCHHHHHHHhc-----CCeEEEEEEcCCcccc---CC
Q 014573 16 SNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKY-----QAVVPLYVFDHRILSR---YS 87 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Wfr~DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~---~~ 87 (422)
+.-.+-++.-..-+++|+...........+.+|+=. |..-....+|..|... .+|..|++.++..... ..
T Consensus 143 s~~~~vl~~~~~PVlvv~~~~~~~~~~~~~~Ilv~~--D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~ 220 (309)
T 3cis_A 143 SVSSGLLRHAHCPVVIIHDEDSVMPHPQQAPVLVGV--DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGID 220 (309)
T ss_dssp HHHHHHHHHCSSCEEEECTTCCCSCSSCCCCEEEEC--CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCC
T ss_pred cHHHHHHHhCCCCEEEEcCCcccCCCCCCCeEEEEe--CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCccc
Confidence 333343444455566676665321111113344322 5555556677777643 5788999987643210 01
Q ss_pred -HhHHHHHHHHHHHHHHHHHh--cCC--cEEEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 88 -NEMLELVIFALEDLRKSLKE--QGS--DLMIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 88 -~~r~~Fl~esL~~L~~~L~~--lg~--~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.....-..+.|.++.+.|.+ .|+ ...+..|++.+.|.+.++ +++.|++-..
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~ 276 (309)
T 3cis_A 221 WPATQSMAEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSR 276 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCC
Confidence 11111122334444444433 244 456778999999999997 8998887543
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=55.12 E-value=80 Score=28.97 Aligned_cols=119 Identities=16% Similarity=0.047 Sum_probs=71.0
Q ss_pred ccccccccccccceeeeccccccccCCCCCeEEEEEcCCCCccC-------CHHHHHHHh-------cCCeEEEEEEcCC
Q 014573 16 SNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDD-------HLGLVAASK-------YQAVVPLYVFDHR 81 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Wfr~DLRl~D-------N~aL~~A~~-------~~~vl~vfi~dp~ 81 (422)
+.-.+-++.-.+-+++|++... ... ..+|+=. |.--.+ ..+|..|.. ..+|..|+++++.
T Consensus 132 s~~~~vl~~~~~PVlvv~~~~~--~~~--~~Ilva~--D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~ 205 (319)
T 3olq_A 132 PLDWQLLRKCPAPVWMVKDKEW--PEY--GTIVVAA--NLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVA 205 (319)
T ss_dssp HHHHHHHHHCSSCEEEEESSCC--CTT--CEEEEEC--CCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCC
T ss_pred ccHHHHHhcCCCCEEEecCccc--ccC--CeEEEEE--CCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCc
Confidence 4444445555556677776542 111 3444433 443322 556766653 2468889998874
Q ss_pred cccc------CC--HhHHHHHHHHHHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 82 ILSR------YS--NEMLELVIFALEDLRKSLKEQGS---DLMIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 82 ~~~~------~~--~~r~~Fl~esL~~L~~~L~~lg~---~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.... .. ........+....|++-+++.|+ ...+..|++.+.|.+.+++.+++.|++-..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~ 275 (319)
T 3olq_A 206 PINIAIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGIL 275 (319)
T ss_dssp SCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECC
T ss_pred chhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEecc
Confidence 3210 11 11222333445555555677776 478889999999999999999998887653
No 34
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=54.48 E-value=16 Score=31.88 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEc
Q 014573 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (422)
Q Consensus 95 ~esL~~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~ 138 (422)
..++.++-+.|++.|+++.|..+.+...+..+++.++++.++.+
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~ 137 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIAT 137 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEc
Confidence 56777888888999999999999999899999999999876654
No 35
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=51.25 E-value=53 Score=29.97 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEEcCCcccc------CC---HhHHHHHHHHHHHHHHHHHhcCCcEEE---E-
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVFDHRILSR------YS---NEMLELVIFALEDLRKSLKEQGSDLMI---R- 115 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~------~~---~~r~~Fl~esL~~L~~~L~~lg~~L~v---~- 115 (422)
|.--....||.+|+.. .+|..++++++..... .. .....-..+.|.++.+.+++.|++... .
T Consensus 30 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~ 109 (294)
T 3loq_A 30 DLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFP 109 (294)
T ss_dssp CSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeec
Confidence 3333344556555532 5788899887653210 01 122234456678888888888988655 5
Q ss_pred eCCHHHHHHHHHHHhCccEEEEcccc
Q 014573 116 FGRVENVIRELVEEVKATSVFAEEEV 141 (422)
Q Consensus 116 ~G~~~~~l~~l~~~~~~~~V~~~~~~ 141 (422)
.|++.+.| ++++.+++.|+.-..-
T Consensus 110 ~g~~~~~I--~a~~~~~DliV~G~~g 133 (294)
T 3loq_A 110 AGDPVVEI--IKASENYSFIAMGSRG 133 (294)
T ss_dssp EECHHHHH--HHHHTTSSEEEEECCC
T ss_pred cCChhHhe--eeccCCCCEEEEcCCC
Confidence 79999999 8999999999887553
No 36
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=50.94 E-value=26 Score=32.18 Aligned_cols=91 Identities=15% Similarity=0.074 Sum_probs=50.5
Q ss_pred HHHHHHHhc-CCeEEEEEEcCCccccCCHhHHHHHHHHHHHHHHHHHhcCCcEEEEe--CC---HHHHHHHHHHHhCccE
Q 014573 61 LGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF--GR---VENVIRELVEEVKATS 134 (422)
Q Consensus 61 ~aL~~A~~~-~~vl~vfi~dp~~~~~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~~--G~---~~~~l~~l~~~~~~~~ 134 (422)
-||+.|.+. -.|++++..-+.... +..|-...+..++...+.+|++++++. |+ -.+.+.++.++.+|+.
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~-----s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~ 93 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEE-----SYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQG 93 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC-------------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSE
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCC-----ccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcE
Confidence 456666665 457777554332111 111111224455566778899999875 32 2455666777778999
Q ss_pred EEEccccchhHHHHHHHHHHHh
Q 014573 135 VFAEEEVEYHLRQMMAIVDETL 156 (422)
Q Consensus 135 V~~~~~~~~~~~~~d~~v~~~l 156 (422)
|++-.-...+.+.+.+.+...+
T Consensus 94 vv~Gdi~s~yqr~r~e~vc~~~ 115 (237)
T 3rjz_A 94 IVAGALASKYQRKRIEKVAKEL 115 (237)
T ss_dssp EECC---CCSHHHHHHHHHHHT
T ss_pred EEECCcchHHHHHHHHHHHHHc
Confidence 9988777777777766654443
No 37
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=45.62 E-value=60 Score=29.06 Aligned_cols=105 Identities=14% Similarity=0.038 Sum_probs=64.9
Q ss_pred ccccccccccccceeeeccccccccCCCCCeEEEEEcCCCCccCCHHHHHHHhc-----CCeEEEEEEcCCccccCCHhH
Q 014573 16 SNHRRSLRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKY-----QAVVPLYVFDHRILSRYSNEM 90 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Wfr~DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~~~~~~r 90 (422)
+.-.+-++.-..-+++|++... .+ +.+++= -|..-....+|..|... .++..+++.++..
T Consensus 131 s~~~~v~~~a~~PVlvv~~~~~----~~-~~ilv~--~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-------- 195 (268)
T 3ab8_A 131 STADRVLRASPVPVLLAPGEPV----EL-EGALLG--YDASESAVRALHALAPLARALGLGVRVVSVHEDPA-------- 195 (268)
T ss_dssp HHHHHHHHHCSSCEEEECSSCC----CC-CEEEEE--CCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH--------
T ss_pred hhHHHHHHhCCCCEEEECCCCC----CC-CEEEEE--ECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH--------
Confidence 3333444444445566665543 21 234432 25555556678776532 5688888876531
Q ss_pred HHHHHHHHHHHHHHHHhcCCcE--EEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 91 LELVIFALEDLRKSLKEQGSDL--MIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 91 ~~Fl~esL~~L~~~L~~lg~~L--~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
-..+.++++.+.|++.|++. .+..|++.+.|.+.+++. +.|++-.
T Consensus 196 --~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~ 242 (268)
T 3ab8_A 196 --RAEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA 242 (268)
T ss_dssp --HHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC
T ss_pred --HHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC
Confidence 11245677888888888764 456799999999999887 7666654
No 38
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=40.58 E-value=68 Score=28.69 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=50.7
Q ss_pred CCHHHHHHHhc-----CCeEEEEEEcCCccc-----cCC--------------HhHHHHHHHHHHHHHHHHHhcCCc--E
Q 014573 59 DHLGLVAASKY-----QAVVPLYVFDHRILS-----RYS--------------NEMLELVIFALEDLRKSLKEQGSD--L 112 (422)
Q Consensus 59 DN~aL~~A~~~-----~~vl~vfi~dp~~~~-----~~~--------------~~r~~Fl~esL~~L~~~L~~lg~~--L 112 (422)
...+|.+|+.. .++..++++++.... ... .....-..+.|.++.+.+++.|++ .
T Consensus 13 s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~ 92 (268)
T 3ab8_A 13 ARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSALAAGVAVEA 92 (268)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 34577777643 678899998753210 000 001122334566677777777865 4
Q ss_pred EEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 113 MIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 113 ~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.+..|++.+.|.+. +.+++.|++-..
T Consensus 93 ~~~~g~~~~~I~~~--~~~~dliV~G~~ 118 (268)
T 3ab8_A 93 VLEEGVPHEAILRR--ARAADLLVLGRS 118 (268)
T ss_dssp EEEEECHHHHHHHH--HTTCSEEEEESS
T ss_pred EEecCCHHHHHHhh--ccCCCEEEEecc
Confidence 56689999999888 778998888654
No 39
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=40.37 E-value=80 Score=29.04 Aligned_cols=85 Identities=7% Similarity=-0.008 Sum_probs=52.6
Q ss_pred CCCccCCHHHHHHHhc-----CCeEEEEEEcCCccc----cCCHh----HHHHHHHHHHHHHHHHHhc-----CCc--EE
Q 014573 54 DLRVDDHLGLVAASKY-----QAVVPLYVFDHRILS----RYSNE----MLELVIFALEDLRKSLKEQ-----GSD--LM 113 (422)
Q Consensus 54 DLRl~DN~aL~~A~~~-----~~vl~vfi~dp~~~~----~~~~~----r~~Fl~esL~~L~~~L~~l-----g~~--L~ 113 (422)
|.--....||..|+.. .+|..++++++.... ..... ...-..+.|.++.+.+++. |++ ..
T Consensus 27 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (309)
T 3cis_A 27 DDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLRAGPPTVHSE 106 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCSCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcccCCCceEEEE
Confidence 3333445677777643 678899998864321 01111 1122234566677777765 665 45
Q ss_pred EEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 114 IRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 114 v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
+..|++.+.|.+.++ +++.|++-..
T Consensus 107 ~~~g~~~~~I~~~a~--~~DliV~G~~ 131 (309)
T 3cis_A 107 IVPAAAVPTLVDMSK--DAVLMVVGCL 131 (309)
T ss_dssp EESSCHHHHHHHHGG--GEEEEEEESS
T ss_pred EecCCHHHHHHHHhc--CCCEEEECCC
Confidence 567999999999886 7888887654
No 40
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=37.56 E-value=1.2e+02 Score=28.80 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEE
Q 014573 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137 (422)
Q Consensus 96 esL~~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~ 137 (422)
+-+..+++-|+.+|++.++..++...++..|+++-.+..|++
T Consensus 130 ~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S 171 (340)
T 1b43_A 130 MLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASAS 171 (340)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEc
Confidence 345566667777777777777777777777776544444433
No 41
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=33.39 E-value=24 Score=34.72 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCc------cEEEEc
Q 014573 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKA------TSVFAE 138 (422)
Q Consensus 94 l~esL~~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~------~~V~~~ 138 (422)
+...+.+|-+.|++.|++.+|+.|...+.+..++++.++ ++|+.+
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~ 272 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGL 272 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEE
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEe
Confidence 347789999999999999999999999999999998654 456665
No 42
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=33.35 E-value=42 Score=29.71 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 101 L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
+-+.|++.|+++.|..|++...+..++++.++..++...
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~ 122 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ 122 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc
Confidence 556677889999999999999999999999999888765
No 43
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.97 E-value=87 Score=23.65 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEe-CCHHH---HHHHHHHHhCcc-EEEEccccchhHHHHHHHHHHHhhhcC
Q 014573 96 FALEDLRKSLKEQGSDLMIRF-GRVEN---VIRELVEEVKAT-SVFAEEEVEYHLRQMMAIVDETLAKVS 160 (422)
Q Consensus 96 esL~~L~~~L~~lg~~L~v~~-G~~~~---~l~~l~~~~~~~-~V~~~~~~~~~~~~~d~~v~~~l~~~g 160 (422)
|-+.|+-++++.-|-+|+|+. |.... .+..-+++-+++ .|.-. ..|++. .++|++.|+..|
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlks--tdpeel--tqrvreflktag 103 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKS--TDPEEL--TQRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEEC--CCHHHH--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhcc--CCHHHH--HHHHHHHHHhcc
Confidence 457788888888899998875 54443 444455666665 33322 334433 356788887665
No 44
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=31.41 E-value=1.7e+02 Score=24.39 Aligned_cols=72 Identities=14% Similarity=-0.005 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCCcEE---EEeCCHHHHHHHHHHHhC--ccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeEe
Q 014573 96 FALEDLRKSLKEQGSDLM---IRFGRVENVIRELVEEVK--ATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICL 170 (422)
Q Consensus 96 esL~~L~~~L~~lg~~L~---v~~G~~~~~l~~l~~~~~--~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~~ 170 (422)
+.|..--..|++.|+.-. +..++|...|.+.+.+++ ++.|+..-.+..-+.-.-..+.......|+ ++..+
T Consensus 58 ~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~~gv----PVlhl 133 (138)
T 2iel_A 58 EEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGL----PVIHV 133 (138)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSS----CEEEE
T ss_pred HHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHhcCC----CEEEE
Confidence 556666666778888754 788999999999999999 998877665543333222334444444555 77654
Q ss_pred c
Q 014573 171 W 171 (422)
Q Consensus 171 ~ 171 (422)
.
T Consensus 134 ~ 134 (138)
T 2iel_A 134 I 134 (138)
T ss_dssp E
T ss_pred e
Confidence 3
No 45
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=30.96 E-value=2.2e+02 Score=26.32 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEeC--CHH---HHHHHHHHH-hCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCc
Q 014573 93 LVIFALEDLRKSLKEQGSDLMIRFG--RVE---NVIRELVEE-VKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKP 166 (422)
Q Consensus 93 Fl~esL~~L~~~L~~lg~~L~v~~G--~~~---~~l~~l~~~-~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~ 166 (422)
|..+-+..+++.++++|..+.+... ++. +.+..++.. .+++.|++.-+... ...+.+.+.+.|| +
T Consensus 18 f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~-----~~~~~~~~~~~gi----P 88 (350)
T 3h75_A 18 FWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYV-----APQILRLSQGSGI----K 88 (350)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSH-----HHHHHHHHTTSCC----E
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhh-----HHHHHHHHHhCCC----c
Confidence 6667777888888899999988763 443 356666765 68998887532211 1233344555666 8
Q ss_pred eeEecC
Q 014573 167 KICLWQ 172 (422)
Q Consensus 167 ~~~~~~ 172 (422)
++.+..
T Consensus 89 vV~~~~ 94 (350)
T 3h75_A 89 LFIVNS 94 (350)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 877754
No 46
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=29.47 E-value=44 Score=28.62 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=33.6
Q ss_pred HHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 101 L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
+-+.|++.|+++.|..|++...+..++++.++..++...
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~ 92 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR 92 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc
Confidence 445677789999999999999999999999999888654
No 47
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=27.81 E-value=2.1e+02 Score=25.59 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCC---HHHHHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCceeE
Q 014573 93 LVIFALEDLRKSLKEQGSDLMIRFGR---VENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKIC 169 (422)
Q Consensus 93 Fl~esL~~L~~~L~~lg~~L~v~~G~---~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~~ 169 (422)
|+.+-+..+.+.++++|..+.+...+ ....+.+++...+++.|++....... ...+.+.+.++ +++.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~i----PvV~ 93 (294)
T 3qk7_A 24 TFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNF----PFLA 93 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTC----CEEE
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCC----CEEE
Confidence 67777888889999999998887533 22455566667789988875433222 12233445566 7777
Q ss_pred ecC
Q 014573 170 LWQ 172 (422)
Q Consensus 170 ~~~ 172 (422)
+..
T Consensus 94 ~~~ 96 (294)
T 3qk7_A 94 LGR 96 (294)
T ss_dssp ESC
T ss_pred ECC
Confidence 654
No 48
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=27.59 E-value=91 Score=26.19 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=31.8
Q ss_pred HHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 101 L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
+-+.|++.|+++.|..|++...+..+++..++. ++...
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~ 84 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI 84 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC
Confidence 455667789999999999999999999999999 55543
No 49
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=26.95 E-value=78 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=32.2
Q ss_pred HHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 103 ~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
+.|++.|+++.|+.|++...+..++++.++..++...
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~ 98 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQ 98 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCC
Confidence 4567789999999999999999999999999887654
No 50
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=26.45 E-value=95 Score=25.23 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEc
Q 014573 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (422)
Q Consensus 100 ~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~ 138 (422)
++-+.|++.|+++.|..|.+...+..+++..++..++..
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~ 81 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTG 81 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccC
Confidence 444556678999999999998899999999999876644
No 51
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=25.61 E-value=60 Score=26.56 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 101 L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
+-+.|++.|+++.|+.|.+...+..+++++++..++...
T Consensus 39 ~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~ 77 (164)
T 3e8m_A 39 GIFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGV 77 (164)
T ss_dssp HHHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSC
T ss_pred HHHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeeccc
Confidence 345566789999999999989999999999999887664
No 52
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=25.21 E-value=80 Score=26.54 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.6
Q ss_pred HHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEc
Q 014573 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (422)
Q Consensus 101 L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~ 138 (422)
+-+.|++.|+++.+..|.+...+..++++.++..++..
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~ 80 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLG 80 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecC
Confidence 44455677999999999999999999999999987744
No 53
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=24.72 E-value=1.2e+02 Score=24.61 Aligned_cols=40 Identities=5% Similarity=-0.003 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccE
Q 014573 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS 134 (422)
Q Consensus 95 ~esL~~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~ 134 (422)
+..|.++.+++++.|..++.+.-+..+.+.+++++++++-
T Consensus 55 ~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~ 94 (163)
T 3gkn_A 55 GLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAF 94 (163)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCc
Confidence 5778999999999999998888888888999999887763
No 54
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.99 E-value=55 Score=18.73 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhc
Q 014573 93 LVIFALEDLRKSLKEQ 108 (422)
Q Consensus 93 Fl~esL~~L~~~L~~l 108 (422)
=++.-|+||++.|+++
T Consensus 5 elykeledlqerlrkl 20 (27)
T 3twe_A 5 ELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567788888888775
No 55
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=23.64 E-value=68 Score=27.52 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 102 ~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
-+.|++.|+++.|+.+++...+..+++..++..++...
T Consensus 55 l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~ 92 (191)
T 3n1u_A 55 LKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQ 92 (191)
T ss_dssp HHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCC
Confidence 34567789999999999999999999999999877655
No 56
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.42 E-value=3.7e+02 Score=23.48 Aligned_cols=68 Identities=6% Similarity=0.039 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEeC--CHHH--HHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCcee
Q 014573 93 LVIFALEDLRKSLKEQGSDLMIRFG--RVEN--VIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKI 168 (422)
Q Consensus 93 Fl~esL~~L~~~L~~lg~~L~v~~G--~~~~--~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~ 168 (422)
|..+-+..+.+.++++|..+.+... ++.. .+.+.+...+++.|++..... + ...+.+.+.++ +++
T Consensus 21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~-~~~~~l~~~~i----PvV 89 (276)
T 3jy6_A 21 FSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------P-QTVQEILHQQM----PVV 89 (276)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------H-HHHHHHHTTSS----CEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------H-HHHHHHHHCCC----CEE
Confidence 6667788888999999999988763 3332 223334456888888754333 1 22333555566 887
Q ss_pred Eec
Q 014573 169 CLW 171 (422)
Q Consensus 169 ~~~ 171 (422)
.+.
T Consensus 90 ~i~ 92 (276)
T 3jy6_A 90 SVD 92 (276)
T ss_dssp EES
T ss_pred EEe
Confidence 764
No 57
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=22.66 E-value=60 Score=34.09 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcccc
Q 014573 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141 (422)
Q Consensus 98 L~~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~~ 141 (422)
..+.-+.|++.|+++.+..|+.......++++.+++.++.+-.+
T Consensus 462 ~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~P 505 (645)
T 3j08_A 462 AKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLP 505 (645)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeCCH
Confidence 34455667788999999999999999999999999999876544
No 58
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=21.55 E-value=1.8e+02 Score=31.02 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEccc
Q 014573 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140 (422)
Q Consensus 101 L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~ 140 (422)
.-+.|++.|+.+.+..|+.......++++.+++.++.+-.
T Consensus 562 aI~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~~ 601 (736)
T 3rfu_A 562 TILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIM 601 (736)
T ss_dssp HHHHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSCC
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEecC
Confidence 3445566799999999999999999999999999887543
No 59
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=21.16 E-value=1.2e+02 Score=25.46 Aligned_cols=39 Identities=5% Similarity=-0.068 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCcc
Q 014573 95 IFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKAT 133 (422)
Q Consensus 95 ~esL~~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~ 133 (422)
+..|.++.+++++.|..++.+..+..+.+.+++++++++
T Consensus 71 l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~ 109 (179)
T 3ixr_A 71 GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFT 109 (179)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCc
Confidence 467889999999999998888888888888999988776
No 60
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=21.05 E-value=3.3e+02 Score=22.27 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCH--------------------H----HHHHHHHHHhCccEEEEccccchhHHHHHHHH
Q 014573 97 ALEDLRKSLKEQGSDLMIRFGRV--------------------E----NVIRELVEEVKATSVFAEEEVEYHLRQMMAIV 152 (422)
Q Consensus 97 sL~~L~~~L~~lg~~L~v~~G~~--------------------~----~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v 152 (422)
.+.++.+.|.++|..|+-..|.. . ..+.+++++.+|+.|+...+...........+
T Consensus 38 ~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~i 117 (143)
T 2yvq_A 38 RFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYVI 117 (143)
T ss_dssp HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcCCccHHHH
Confidence 45566667777777665443210 0 13556667777887777665533333444566
Q ss_pred HHHhhhcCC
Q 014573 153 DETLAKVSL 161 (422)
Q Consensus 153 ~~~l~~~gi 161 (422)
++.+-+.+|
T Consensus 118 RR~Av~~~I 126 (143)
T 2yvq_A 118 RRTAVDSGI 126 (143)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 665555555
No 61
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=20.86 E-value=1.9e+02 Score=27.93 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEc
Q 014573 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (422)
Q Consensus 97 sL~~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~ 138 (422)
++.++-+.|++.|.++.|+.|.+...+..+++.++++.++.+
T Consensus 260 g~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 301 (415)
T 3p96_A 260 GARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAAN 301 (415)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeee
Confidence 456777889999999999999999999999999999888765
No 62
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=20.59 E-value=99 Score=29.06 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 96 esL~~L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
.++.++-+.|++.|.++.|+.+.+...+..+++..++..++.+.
T Consensus 182 pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 182 PGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred cCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 45667778888999999999999889999999999998777643
No 63
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=20.55 E-value=1.3e+02 Score=25.35 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=32.3
Q ss_pred HHHHHHhcCCcEEEEeCCHHHHHHHHHHHhCccEEEEcc
Q 014573 101 LRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (422)
Q Consensus 101 L~~~L~~lg~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~ 139 (422)
+-+.|++.|+++.|+.|.+...+..+++..++..++...
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~ 99 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQ 99 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCC
Confidence 345567789999999999888999999999999877654
No 64
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.53 E-value=2.9e+02 Score=24.49 Aligned_cols=70 Identities=6% Similarity=0.008 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEeC--CHHH--HHHHHHHHhCccEEEEccccchhHHHHHHHHHHHhhhcCCCCCCcee
Q 014573 93 LVIFALEDLRKSLKEQGSDLMIRFG--RVEN--VIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKI 168 (422)
Q Consensus 93 Fl~esL~~L~~~L~~lg~~L~v~~G--~~~~--~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~gi~~~~~~~ 168 (422)
|..+-+..+++.+++.|..+.+... ++.. .+.+.+...+++.|++..... ...+.+.+.+.++ +++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~~~~~~~i----PvV 91 (291)
T 3egc_A 22 FFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG------EHDYLRTELPKTF----PIV 91 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS------CCHHHHHSSCTTS----CEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC------ChHHHHHhhccCC----CEE
Confidence 6667788888999999999988763 3332 233344456889888754332 1123344555565 777
Q ss_pred EecC
Q 014573 169 CLWQ 172 (422)
Q Consensus 169 ~~~~ 172 (422)
.+..
T Consensus 92 ~~~~ 95 (291)
T 3egc_A 92 AVNR 95 (291)
T ss_dssp EESS
T ss_pred EEec
Confidence 7643
No 65
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.10 E-value=1.2e+02 Score=23.58 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCC--HHHHHHHHHHHhCccEEEEc
Q 014573 96 FALEDLRKSLKEQGSDLMIRFGR--VENVIRELVEEVKATSVFAE 138 (422)
Q Consensus 96 esL~~L~~~L~~lg~~L~v~~G~--~~~~l~~l~~~~~~~~V~~~ 138 (422)
+.|..++.-+++.|...-..+.. -.+.+.+|+++|+++.|+.-
T Consensus 13 etlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvv 57 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVV 57 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 56777888888888776655532 22568889999999966653
Done!