BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014574
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 213 TGRRSGSDAGFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHADKS 272
TG+ +G+D E R+ Q SA + + F+ I S +I ++ ++LI S
Sbjct: 255 TGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICS---NAIPELNEVMLITPDSGLYS 311
Query: 273 FFSSGELVVCSAVELSGFFLC 293
F + G L V + ++ F LC
Sbjct: 312 FINQGCLTVDNIDDVEEFKLC 332
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 213 TGRRSGSDAGFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHADKS 272
TG+ +G+D E R+ Q SA + + F+ I S +I ++ ++LI S
Sbjct: 256 TGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICS---NAIPELNEVMLITPDSGLYS 312
Query: 273 FFSSGELVVCSAVELSGFFLC 293
F + G L V + ++ F LC
Sbjct: 313 FINQGCLTVDNIDDVEEFKLC 333
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 213 TGRRSGSDAGFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHADKS 272
TG+ +G+D E R+ Q SA + + F+ I S +I ++ ++L+ S
Sbjct: 254 TGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICS---NAIPELNDVMLVTPDSGLYS 310
Query: 273 FFSSGELVVCSAVELSGFFLC 293
F + G L V + ++ F LC
Sbjct: 311 FINQGCLTVDNIDDVEEFKLC 331
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 213 TGRRSGSDAGFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHADKS 272
TG+ +G+D E R+ Q SA + + F+ I S +I ++ ++L+ S
Sbjct: 254 TGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICS---NAIPELNDVMLVTPDSGLYS 310
Query: 273 FFSSGELVVCSAVELSGFFLC 293
F + G L V + ++ F LC
Sbjct: 311 FINQGCLTVDNIDDVEEFKLC 331
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 213 TGRRSGSDAGFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHADKS 272
TG+ +G+D E R+ Q SA + + F+ I S +I ++ ++L+ S
Sbjct: 254 TGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICS---NAIPELNDVMLVTPDSGLYS 310
Query: 273 FFSSGELVVCSAVELSGFFLC 293
F + G L V + ++ F LC
Sbjct: 311 FINQGCLTVDNIDDVEEFKLC 331
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 213 TGRRSGSDAGFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHADKS 272
TG+ +G+D E R+ Q SA + + F+ I S +I ++ ++L+ S
Sbjct: 250 TGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICS---NAIPELNDVMLVTPDSGLYS 306
Query: 273 FFSSGELVVCSAVELSGFFLC 293
F + G L V + ++ F LC
Sbjct: 307 FINQGCLTVDNIDDVEEFKLC 327
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 213 TGRRSGSDAGFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHADKS 272
TG+ +G+D E R+ Q SA + + F+ I S +I ++ ++L+ S
Sbjct: 249 TGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICS---NAIPELNDVMLVTPDSGLYS 305
Query: 273 FFSSGELVVCSAVELSGFFLC 293
F + G L V + ++ F LC
Sbjct: 306 FINQGCLTVDNIDDVEEFKLC 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,269,531
Number of Sequences: 62578
Number of extensions: 430378
Number of successful extensions: 937
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 8
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)