Query 014574
Match_columns 422
No_of_seqs 69 out of 71
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12056 DUF3537: Protein of u 100.0 2E-153 4E-158 1147.2 33.8 363 38-406 1-398 (398)
2 PF08395 7tm_7: 7tm Chemosenso 90.8 7.6 0.00017 35.4 13.1 146 222-414 218-365 (372)
3 PF02949 7tm_6: 7tm Odorant re 41.4 22 0.00049 32.9 2.7 85 220-307 174-259 (313)
4 PF15106 TMEM156: TMEM156 prot 40.2 17 0.00036 36.0 1.6 60 45-115 18-86 (226)
5 PRK10929 putative mechanosensi 38.9 3E+02 0.0065 33.2 11.7 94 105-215 554-651 (1109)
6 PF02633 Creatininase: Creatin 24.7 1.6E+02 0.0034 28.2 5.4 58 96-156 68-125 (237)
7 PRK06569 F0F1 ATP synthase sub 22.6 63 0.0014 30.3 2.2 59 101-159 3-76 (155)
8 PF06734 UL97: UL97; InterPro 21.4 90 0.0019 30.2 3.0 35 108-155 91-125 (184)
9 PF08883 DOPA_dioxygen: Dopa 4 21.3 48 0.001 29.2 1.1 19 373-391 56-74 (104)
10 PF00558 Vpu: Vpu protein; In 19.9 94 0.002 26.5 2.5 32 200-244 14-45 (81)
No 1
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.
Probab=100.00 E-value=2.1e-153 Score=1147.18 Aligned_cols=363 Identities=50% Similarity=0.804 Sum_probs=329.9
Q ss_pred chHHHHHhHHhhhheeeccCCCcchhHHHHHHHHHHHHHHhhhhhhcccCCCCCccccCCCCcccccceecchhhHHHHH
Q 014574 38 LLFDELRNFRISLKWCALDHSSCIGKFISYFAFIFLAIIVPLISSLCIKVPSSTQDCAQDGPVSFNKLVQFPESGLALVG 117 (422)
Q Consensus 38 ~~~deLr~fr~~L~w~~lDqSs~~~~~~Sw~~F~~lav~vP~~~~~~~~c~~c~~~c~~~~~~~fe~~Vq~s~s~lAavS 117 (422)
|++||||+||++|+|||+||||++++++||++|+++|++||++++++++|| +||++|++|||++||+|||++|+||
T Consensus 1 h~~deL~~fr~~L~w~~~dqSs~~~~~~Sw~~F~ll~v~vP~~~~~~~~c~----~cd~~~~~~f~~~Vq~s~s~lAavs 76 (398)
T PF12056_consen 1 HARDELRSFRSFLRWCGLDQSSPLSAALSWSVFLLLAVAVPAASHFLLSCP----SCDKYHIRPFEKLVQLSQSALAAVS 76 (398)
T ss_pred CchhHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CchhcCCCchhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999 5669999999999999999999999
Q ss_pred HHHhhhhhhhcccceecccccccchhHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhheeEEEeccccCCCCCCCCchh
Q 014574 118 FFILSRFFSKYGLRHLLFLDGLQEDSLFVRRGYTRELDKAFRYLACILLPSFFVELAHKIIYFSTVRVSFPGGGGDPWIN 197 (422)
Q Consensus 118 f~cLS~~~rkyGLRrfLflD~l~~~s~~vr~gY~~~l~~sfrlLa~~vLPcf~~e~a~ki~wy~~v~~~~P~~~~~~~~~ 197 (422)
|+|||||+||||||||||+||++|||++||+||++||++|||+|++|+||||++|+|||||||++|++++||++|++||+
T Consensus 77 f~cLS~~~rkyGlRr~LflD~l~~~s~~vr~gY~~~l~~sfrlLa~~vLPcf~~e~~~ki~~~~~~~~~~P~~~~~~~~~ 156 (398)
T PF12056_consen 77 FLCLSHFLRKYGLRRFLFLDKLRDDSEEVRRGYTRQLNRSFRLLACWVLPCFLVEAAYKIWWYSSVAVQIPYIGHPSWWN 156 (398)
T ss_pred HHHHHHHhHhcCceeeeeecccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEeeccccCCccCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcc--------------------------ccCCCHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 014574 198 SIVMFVLVLASWVYRTGR--------------------------RSGSDAGFIFREHLRIRKQLSATSHRYRFFIIASLV 251 (422)
Q Consensus 198 s~v~~~l~l~SW~YrT~i--------------------------~~~sDv~~il~EH~RIR~qL~~ISHRfR~Fil~~ll 251 (422)
+ ++|+++++||+|||+| |+++||++||+||+|||+||+|||||||+|||+||+
T Consensus 157 s-va~~l~l~SW~YrT~ifl~~CvLFrLiC~LQiLr~~~~~klfe~~sdv~~il~EH~RiR~qL~~ISHRfR~Fil~~l~ 235 (398)
T PF12056_consen 157 S-VACLLELASWLYRTTIFLLVCVLFRLICNLQILRFEGYAKLFERDSDVGVILEEHLRIRRQLSKISHRFRIFILLSLL 235 (398)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheehHhHHHHHccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9 9999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccceeecccCceeehhhhHhhhHHHhhhhhhhhHhhhhhhhhHhhhhhheeeecccCCCC-CCC
Q 014574 252 VISISQMGALLLILGTHADKSFFSSGELVVCSAVELSGFFLCVLGAARITHRAQGITSVATRWHMTATCASVGGSD-SGK 330 (422)
Q Consensus 252 ~VTaSQf~aLl~tt~~~~~inf~~~GdLavcS~vqvsGl~icL~~AaKITHRAQ~I~siAskWHa~aT~~s~~~~~-~~~ 330 (422)
+||||||++||+||++++++||+|+|||||||+|||+|++||||||||||||||+|||+||||||+|||+|+|.++ ++|
T Consensus 236 ~VTaSQf~sLl~~t~~~~~inf~~~GdlavcS~vqv~Gl~iCL~~AaKITHrAQ~I~siAskWHa~aTc~s~d~~~~~~p 315 (398)
T PF12056_consen 236 LVTASQFVSLLQTTRSKGDINFFNAGDLAVCSVVQVSGLFICLHGAAKITHRAQAITSIASKWHACATCSSFDSDQGETP 315 (398)
T ss_pred HHHHHHHHHHHHHhccccceeEeeccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheecccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986322 344
Q ss_pred CCC-CCccCCCC-CCCCCCCCCCC-----CCCcccccccCCCC-CCchHHhHHHHHHHhhcCCCceEEEEEEeehhhHHH
Q 014574 331 GNA-GEAADHDQ-CRDSTSSSSDS-----DSSSDINIKVLSSQ-EPPSFQIRQALVAYLQHNNGGITLFGFALDRGLLHT 402 (422)
Q Consensus 331 ~~~-~~~~~~~~-~~~~~~s~sd~-----ed~~~~~~~~~~~~-~~~SfqkRQALVtYLq~N~~GITvfGf~lDR~~LhT 402 (422)
++. .+.+.++. ....++|+||+ ||+.++ ++..+.+ +|+||||||||||||||||||||||||+||||||||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~sd~es~d~~~~~~~-~~~~~~~~~~~SfqKRQALVtYLq~N~aGITvfGf~lDR~~LhT 394 (398)
T PF12056_consen 316 TSDSLSAAANPFPSAGINSSSSDDESGDEEDDLDN-TKQLPSYADMISFQKRQALVTYLQNNRAGITVFGFVLDRGLLHT 394 (398)
T ss_pred CCCccccccccccCCCCCCCccchhhcccCCCCCc-cccccccchhHHHHHHHHHHHHHhcCCCCeEEEEEEeehHHHHH
Confidence 432 11111111 11122222222 333333 4444444 599999999999999999999999999999999999
Q ss_pred HHHH
Q 014574 403 IFAF 406 (422)
Q Consensus 403 IF~~ 406 (422)
|||+
T Consensus 395 IF~i 398 (398)
T PF12056_consen 395 IFMI 398 (398)
T ss_pred HhhC
Confidence 9985
No 2
>PF08395 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013604 This family includes a number of gustatory and odorant receptors mainly from insect species such as Anopheles gambiae (African malaria mosquito) and Drosophila melanogaster (Fruit fly). They are classified as G-protein-coupled receptors (GPCRs), or seven-transmembrane receptors. They show high sequence divergence, consistent with an ancient origin for the family [, ]. ; GO: 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=90.76 E-value=7.6 Score=35.36 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-ceeecccCceeehhhhHhhhHHHhhhhhhhh
Q 014574 222 GFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHA-DKSFFSSGELVVCSAVELSGFFLCVLGAARI 300 (422)
Q Consensus 222 ~~il~EH~RIR~qL~~ISHRfR~Fil~~ll~VTaSQf~aLl~tt~~~~-~inf~~~GdLavcS~vqvsGl~icL~~AaKI 300 (422)
..+.+-|.+|.+--..+..=|...+++.+...-..-...++....... ..+......-.+.....+..+++-...+.++
T Consensus 218 ~~l~~~~~~L~~~~~~in~~fg~~ll~~~~~~f~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (372)
T PF08395_consen 218 RKLRRLHDELCDLVESINRIFGLQLLLILLSSFIFIVFNLYYIYYNISQNSSLFMLLINILWLFIYIIFLVLLIYVCDRI 297 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeehhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666655554444333333333331111111 1222233333345555666677777888888
Q ss_pred HhhhhhhhhHhhhhhheeeecccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccccCCCCCCchHHhHHHHHHH
Q 014574 301 THRAQGITSVATRWHMTATCASVGGSDSGKGNAGEAADHDQCRDSTSSSSDSDSSSDINIKVLSSQEPPSFQIRQALVAY 380 (422)
Q Consensus 301 THRAQ~I~siAskWHa~aT~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~sd~ed~~~~~~~~~~~~~~~SfqkRQALVtY 380 (422)
+..++++..+. |-. ... . . ++ .-.++-+.+...
T Consensus 298 ~~e~~~~~~~l---~~~---~~~-------~--------------~--~~------------------~~~~~l~~f~~q 330 (372)
T PF08395_consen 298 SQEANKTGSIL---HKL---NNF-------R--------------N--DS------------------ELQRELELFSLQ 330 (372)
T ss_pred hhhHhHHHHHH---HHc---Ccc-------c--------------c--hh------------------HHhhHHHHHHHH
Confidence 88888888777 322 100 0 0 00 012235677899
Q ss_pred hhcCCCceEEEEE-EeehhhHHHHHHHHHHHHHHh
Q 014574 381 LQHNNGGITLFGF-ALDRGLLHTIFAFEFSLVLWI 414 (422)
Q Consensus 381 Lq~N~~GITvfGf-~lDR~~LhTIF~~E~SLVLwi 414 (422)
++|+|-.+|.+|| .+|++++.++++.=.|-+.-+
T Consensus 331 l~~~~~~~ta~g~f~ld~~ll~~~~~~i~TYliIL 365 (372)
T PF08395_consen 331 LQHQPLKFTACGFFDLDRSLLFSIIGAITTYLIIL 365 (372)
T ss_pred HHhcCCceEEeeEEEECHHHHHHHHHHHHHHHHhh
Confidence 9999999999998 599999999999877765543
No 3
>PF02949 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 All known members of this group are seven-transmembrane proteins that are candidate odorant receptors in Drosophila.; GO: 0004984 olfactory receptor activity, 0005549 odorant binding, 0007608 sensory perception of smell, 0016020 membrane
Probab=41.43 E-value=22 Score=32.91 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=60.3
Q ss_pred CHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-ceeecccCceeehhhhHhhhHHHhhhhhh
Q 014574 220 DAGFIFREHLRIRKQLSATSHRYRFFIIASLVVISISQMGALLLILGTHA-DKSFFSSGELVVCSAVELSGFFLCVLGAA 298 (422)
Q Consensus 220 Dv~~il~EH~RIR~qL~~ISHRfR~Fil~~ll~VTaSQf~aLl~tt~~~~-~inf~~~GdLavcS~vqvsGl~icL~~Aa 298 (422)
....+++.|.++-+..+++..-|+..++..++..+..=-..+++.+.... ..+++.-+=+.++++.|+ ++.|.. +.
T Consensus 174 ~L~~~I~~H~~ll~~~~~l~~~~~~~~l~~~~~~~~~ic~~~f~i~~~~~~~~~~~~~~~~~~~~~~~l--f~~c~~-g~ 250 (313)
T PF02949_consen 174 ELKECIKRHQRLLRFVEKLEDIFSPIFLVQFLSSSLVICFLLFQISTSSSSSFNIFFYFMYLVAMLLQL--FIYCYL-GQ 250 (313)
T ss_pred HHHHHHhhhcchhhhhhhhhhccchhhhhhhhhhHHHHhhcccccccccccccccchhhhHHHHHHHHH--HHHHhh-HH
Confidence 46789999999999999999999999888887766665566666664444 556666655566666666 455653 45
Q ss_pred hhHhhhhhh
Q 014574 299 RITHRAQGI 307 (422)
Q Consensus 299 KITHRAQ~I 307 (422)
+++....++
T Consensus 251 ~l~~~s~~i 259 (313)
T PF02949_consen 251 ELIDESEEI 259 (313)
T ss_pred HHHHHHhhh
Confidence 566655554
No 4
>PF15106 TMEM156: TMEM156 protein family
Probab=40.24 E-value=17 Score=36.02 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=43.7
Q ss_pred hHHhhhhee---------eccCCCcchhHHHHHHHHHHHHHHhhhhhhcccCCCCCccccCCCCcccccceecchhhHHH
Q 014574 45 NFRISLKWC---------ALDHSSCIGKFISYFAFIFLAIIVPLISSLCIKVPSSTQDCAQDGPVSFNKLVQFPESGLAL 115 (422)
Q Consensus 45 ~fr~~L~w~---------~lDqSs~~~~~~Sw~~F~~lav~vP~~~~~~~~c~~c~~~c~~~~~~~fe~~Vq~s~s~lAa 115 (422)
+|-++|+|. -++||++-. ++-+-|.+...+=.|+.|- .|+.+..-.|..+=|-|....+-
T Consensus 18 Sfv~fLQ~~retQtilgif~nhS~Fqn----------~~~iCq~~~~e~~~csscl-~CESkg~~dfi~QEqtSKv~im~ 86 (226)
T PF15106_consen 18 SFVTFLQPVRETQTILGIFLNHSNFQN----------FTRICQDITSEFKMCSSCL-VCESKGNVDFISQEQTSKVLIMR 86 (226)
T ss_pred hhHHhcchhcccchhheeecccccccc----------hhhhhhccCcccccCccee-EEecCCCCceeehhhcCcceeee
Confidence 555666553 357777544 4566788888877899998 89999999999988888554443
No 5
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=38.93 E-value=3e+02 Score=33.22 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=54.8
Q ss_pred ceecchhhHHHHH----HHHhhhhhhhcccceecccccccchhHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhheeEE
Q 014574 105 LVQFPESGLALVG----FFILSRFFSKYGLRHLLFLDGLQEDSLFVRRGYTRELDKAFRYLACILLPSFFVELAHKIIYF 180 (422)
Q Consensus 105 ~Vq~s~s~lAavS----f~cLS~~~rkyGLRrfLflD~l~~~s~~vr~gY~~~l~~sfrlLa~~vLPcf~~e~a~ki~wy 180 (422)
.+.++....|..+ |+...+++|+-|+ +.-..+-..+.|++ ..+-+|.+.++++|..++-..-+..
T Consensus 554 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~Gl----~~~HF~w~~~~v~~-----~~~~~~~~~~~~~pl~~~~~~~~~~-- 622 (1109)
T PRK10929 554 AVAIGDGVTATVPLLWVFMICATFARPNGL----FIAHFGWPRERVAR-----AMRYYLLSIGLIVPLIMALITFDNL-- 622 (1109)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHcCCCCe----eHHhcCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhC--
Confidence 3444444444333 3333445566664 33334444455544 4456788999999998864443211
Q ss_pred EeccccCCCCCCCCchhHHHHHHHHHhhhhhhhcc
Q 014574 181 STVRVSFPGGGGDPWINSIVMFVLVLASWVYRTGR 215 (422)
Q Consensus 181 ~~v~~~~P~~~~~~~~~s~v~~~l~l~SW~YrT~i 215 (422)
.....+..+...+.++.+.+++|+|..-.
T Consensus 623 ------~~~~~~~~lgr~~~i~~~~~l~~~~~~~~ 651 (1109)
T PRK10929 623 ------NDREFSGTLGRLCFILLCGALSLVTLSLK 651 (1109)
T ss_pred ------chhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 11334556667777888889999997643
No 6
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=24.75 E-value=1.6e+02 Score=28.20 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=37.3
Q ss_pred CCCCcccccceecchhhHHHHHHHHhhhhhhhcccceecccccccchhHHHHhhHHHHHHH
Q 014574 96 QDGPVSFNKLVQFPESGLALVGFFILSRFFSKYGLRHLLFLDGLQEDSLFVRRGYTRELDK 156 (422)
Q Consensus 96 ~~~~~~fe~~Vq~s~s~lAavSf~cLS~~~rkyGLRrfLflD~l~~~s~~vr~gY~~~l~~ 156 (422)
..|. .|-+-|.++...+.++ +.-+-+.+.+.|.||++++....+...- -+.-.+++++
T Consensus 68 ~~h~-~fpGTisl~~~t~~~~-l~di~~sl~~~Gf~~ivivngHgGN~~~-l~~~~~~l~~ 125 (237)
T PF02633_consen 68 PHHM-GFPGTISLSPETLIAL-LRDILRSLARHGFRRIVIVNGHGGNIAA-LEAAARELRQ 125 (237)
T ss_dssp GCCT-TSTT-BBB-HHHHHHH-HHHHHHHHHHHT--EEEEEESSTTHHHH-HHHHHHHHHH
T ss_pred cccC-CCCCeEEeCHHHHHHH-HHHHHHHHHHcCCCEEEEEECCHhHHHH-HHHHHHHHHh
Confidence 3444 6889999998888887 5666677888999999999988874433 2333444443
No 7
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=22.59 E-value=63 Score=30.28 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=44.6
Q ss_pred ccccceecchhhHHHHHHHHhhhhhhhcccceeccc---------------ccccchhHHHHhhHHHHHHHHHH
Q 014574 101 SFNKLVQFPESGLALVGFFILSRFFSKYGLRHLLFL---------------DGLQEDSLFVRRGYTRELDKAFR 159 (422)
Q Consensus 101 ~fe~~Vq~s~s~lAavSf~cLS~~~rkyGLRrfLfl---------------D~l~~~s~~vr~gY~~~l~~sfr 159 (422)
|||...-.++-..-+|+|+-|.-+++|+...++.=+ ++.+.+.+..+..|.++|.++=.
T Consensus 3 Qfd~~~~~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~ 76 (155)
T PRK06569 3 QFDIATYYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNT 76 (155)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667788889999999999999877766544 34556667777779999987644
No 8
>PF06734 UL97: UL97; InterPro: IPR010615 The gene product form the gene UL97 is a serine/threonine kinase. Although it can phosphorylates the antiviral drug ganciclovir [], its biological function is the phosphorylation of its natural viral and cellular protein substrates which affect viral replication at many levels. The kinase phosphorylates eukaryotic elongation factor 1delta, the carboxyl terminal domain of the large subunit of RNA polymerase II, the retinoblastoma tumour suppressor and lamins A and C performing a similar function to the cdc2/cyclin-dependent kinase 1. The activity of UL97 appear to stimulate the cell cycle to support viral DNA synthesis, enhance the expression of viral genes, promote virion morphogenesis and facilitate the egress of mature capsids from the nucleus []. ; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0016032 viral reproduction
Probab=21.44 E-value=90 Score=30.25 Aligned_cols=35 Identities=34% Similarity=0.385 Sum_probs=29.8
Q ss_pred cchhhHHHHHHHHhhhhhhhcccceecccccccchhHHHHhhHHHHHH
Q 014574 108 FPESGLALVGFFILSRFFSKYGLRHLLFLDGLQEDSLFVRRGYTRELD 155 (422)
Q Consensus 108 ~s~s~lAavSf~cLS~~~rkyGLRrfLflD~l~~~s~~vr~gY~~~l~ 155 (422)
+-+.+++-|..+||-|.+-|.|++ +||++|+..|=
T Consensus 91 ~dLcALg~V~~fCl~R~LD~RG~~-------------~Vr~~~E~~LF 125 (184)
T PF06734_consen 91 ADLCALGNVVLFCLVRLLDRRGLR-------------EVRKYYENLLF 125 (184)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccH-------------HHHhhHHHHHH
Confidence 457889999999999999998886 59999998763
No 9
>PF08883 DOPA_dioxygen: Dopa 4,5-dioxygenase family; InterPro: IPR014980 This family of proteins is related to P87064 from SWISSPROT a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore. ; PDB: 2NYH_A 2P8I_C.
Probab=21.27 E-value=48 Score=29.18 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=13.8
Q ss_pred hHHHHHHHhhcCCCceEEE
Q 014574 373 IRQALVAYLQHNNGGITLF 391 (422)
Q Consensus 373 kRQALVtYLq~N~~GITvf 391 (422)
.-.++|.||+.||||.||+
T Consensus 56 ~f~~~v~Wl~~nrg~LsVL 74 (104)
T PF08883_consen 56 QFAEVVPWLMLNRGGLSVL 74 (104)
T ss_dssp HHHHHHHHHHHH-TT--EE
T ss_pred HHHHHHHHHHHhCCCceEE
Confidence 3568999999999999997
No 10
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=19.88 E-value=94 Score=26.48 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhhccccCCCHhHHHHHHHHHHHHHhhhhhhhHH
Q 014574 200 VMFVLVLASWVYRTGRRSGSDAGFIFREHLRIRKQLSATSHRYRF 244 (422)
Q Consensus 200 v~~~l~l~SW~YrT~i~~~sDv~~il~EH~RIR~qL~~ISHRfR~ 244 (422)
+++++.++-|+. ++.|-+++|+| ++|-.+.++
T Consensus 14 v~~iiaIvvW~i------------v~ieYrk~~rq-rkId~li~R 45 (81)
T PF00558_consen 14 VALIIAIVVWTI------------VYIEYRKIKRQ-RKIDRLIER 45 (81)
T ss_dssp HHHHHHHHHHHH------------H-------------CHHHHHH
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHH-HhHHHHHHH
Confidence 667778888875 67788888888 777776654
Done!