Query 014574
Match_columns 422
No_of_seqs 69 out of 71
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p8i_A Putative dioxygenase; Y 15.2 50 0.0017 28.4 1.1 18 374-391 69-86 (117)
2 2peb_A Putative dioxygenase; s 13.9 57 0.0019 28.3 1.1 18 374-391 66-83 (122)
3 3ech_C 25-MER fragment of prot 12.2 93 0.0032 20.1 1.4 17 147-163 1-17 (25)
4 3nkl_A UDP-D-quinovosamine 4-d 8.8 2.1E+02 0.0071 22.8 2.8 23 375-398 17-39 (141)
5 1m45_B IQ2, IQ2 motif from MYO 7.9 40 0.0014 21.9 -1.5 11 378-388 6-16 (26)
6 2zjr_L 50S ribosomal protein L 7.6 94 0.0032 26.5 0.2 20 225-244 7-29 (114)
7 3r8s_O 50S ribosomal protein L 7.4 1.5E+02 0.0053 25.1 1.4 20 224-244 6-25 (116)
8 1v54_L VIIIA, cytochrome C oxi 6.6 4.3E+02 0.015 19.2 3.3 24 59-82 17-40 (47)
9 3v2d_S 50S ribosomal protein L 6.6 1.8E+02 0.0061 24.7 1.4 20 224-244 7-26 (112)
10 3tqu_A Non-canonical purine NT 6.4 1.6E+02 0.0056 27.1 1.1 16 299-314 182-197 (203)
No 1
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=15.22 E-value=50 Score=28.44 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=16.3
Q ss_pred HHHHHHHhhcCCCceEEE
Q 014574 374 RQALVAYLQHNNGGITLF 391 (422)
Q Consensus 374 RQALVtYLq~N~~GITvf 391 (422)
-.++|.||+.||||.+|+
T Consensus 69 f~~~v~WL~~nrg~LsVL 86 (117)
T 2p8i_A 69 FADLVGWLTLNHGALDIF 86 (117)
T ss_dssp HHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCCCeEE
Confidence 458999999999999997
No 2
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=13.93 E-value=57 Score=28.33 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=16.3
Q ss_pred HHHHHHHhhcCCCceEEE
Q 014574 374 RQALVAYLQHNNGGITLF 391 (422)
Q Consensus 374 RQALVtYLq~N~~GITvf 391 (422)
-.++|.||+.||||.+|+
T Consensus 66 f~~~v~WL~lnrg~LsVL 83 (122)
T 2peb_A 66 FDKVVPWLMLNREGLDIL 83 (122)
T ss_dssp HHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCCceEE
Confidence 458999999999999997
No 3
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=12.20 E-value=93 Score=20.10 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=12.7
Q ss_pred HhhHHHHHHHHHHHHHH
Q 014574 147 RRGYTRELDKAFRYLAC 163 (422)
Q Consensus 147 r~gY~~~l~~sfrlLa~ 163 (422)
|+||+++|.++-|-=||
T Consensus 1 rr~~te~lrr~arrnaw 17 (25)
T 3ech_C 1 RRDYTEQLRRAARRNAW 17 (26)
T ss_dssp -CCHHHHHHHHHHHTHH
T ss_pred CCcHHHHHHHHHHHhHH
Confidence 68999999988776554
No 4
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=8.78 E-value=2.1e+02 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCceEEEEEEeehh
Q 014574 375 QALVAYLQHNNGGITLFGFALDRG 398 (422)
Q Consensus 375 QALVtYLq~N~~GITvfGf~lDR~ 398 (422)
+.+..+|++|+ |..+.||+-|..
T Consensus 17 ~~l~~~l~~~~-g~~vvg~~d~~~ 39 (141)
T 3nkl_A 17 LQLANMLRQGK-EFHPIAFIDDDR 39 (141)
T ss_dssp HHHHHHHHHSS-SEEEEEEECSCG
T ss_pred HHHHHHHHhCC-CcEEEEEEECCc
Confidence 45788898886 899999997764
No 5
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=7.91 E-value=40 Score=21.90 Aligned_cols=11 Identities=45% Similarity=0.785 Sum_probs=8.9
Q ss_pred HHHhhcCCCce
Q 014574 378 VAYLQHNNGGI 388 (422)
Q Consensus 378 VtYLq~N~~GI 388 (422)
+.|||||-.|+
T Consensus 6 ikylqnnikgf 16 (26)
T 1m45_B 6 IKYLQNNIKGF 16 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccceE
Confidence 68999997764
No 6
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=7.56 E-value=94 Score=26.52 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhh---hhhhHH
Q 014574 225 FREHLRIRKQLSAT---SHRYRF 244 (422)
Q Consensus 225 l~EH~RIR~qL~~I---SHRfR~ 244 (422)
.+.|+|||+.++.+ +.|+|.
T Consensus 7 ~~r~~r~r~ki~gt~~~~~rpRL 29 (114)
T 2zjr_L 7 IRRKLRTRRKVRTTTAASGRLRL 29 (114)
T ss_dssp -CHHHHHHHHHHSCSTTTCSEEE
T ss_pred HHHHHHHHhhhccccCCCCCCEE
Confidence 46799999999998 888874
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=7.35 E-value=1.5e+02 Score=25.07 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhhhhhHH
Q 014574 224 IFREHLRIRKQLSATSHRYRF 244 (422)
Q Consensus 224 il~EH~RIR~qL~~ISHRfR~ 244 (422)
-++.|.|+|+.+.. +-|+|.
T Consensus 6 r~~r~~r~R~ki~~-~~rpRL 25 (116)
T 3r8s_O 6 RIRRATRARRKLQE-LGATRL 25 (116)
T ss_dssp HHHHHHHHHHHHHT-TTCCEE
T ss_pred HHHHHHHHHHHhcc-CCCCEE
Confidence 35779999999988 888883
No 8
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=6.62 E-value=4.3e+02 Score=19.20 Aligned_cols=24 Identities=8% Similarity=-0.016 Sum_probs=18.9
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhh
Q 014574 59 SCIGKFISYFAFIFLAIIVPLISS 82 (422)
Q Consensus 59 s~~~~~~Sw~~F~~lav~vP~~~~ 82 (422)
+....++-|.+|+..|+.+|.++.
T Consensus 17 nk~~~~~~~~~f~g~GF~~PF~i~ 40 (47)
T 1v54_L 17 NKWRLLAMMTLFFGSGFAAPFFIV 40 (47)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhHHHHH
Confidence 455566778889999999998763
No 9
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=6.57 E-value=1.8e+02 Score=24.69 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHH
Q 014574 224 IFREHLRIRKQLSATSHRYRF 244 (422)
Q Consensus 224 il~EH~RIR~qL~~ISHRfR~ 244 (422)
-++.|.|+|+.++.+. |+|.
T Consensus 7 r~~r~~r~r~ki~gt~-rpRL 26 (112)
T 3v2d_S 7 YERRKFRVRNRIKRTG-RLRL 26 (112)
T ss_dssp HHHHHHHHHHHHHHTC-CCEE
T ss_pred HHHHHHHHHHHhcCCC-CCEE
Confidence 3578999999999888 8883
No 10
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase; HET: MSE; 1.90A {Coxiella burnetii}
Probab=6.36 E-value=1.6e+02 Score=27.12 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=9.1
Q ss_pred hhHhhhhhhhhHhhhh
Q 014574 299 RITHRAQGITSVATRW 314 (422)
Q Consensus 299 KITHRAQ~I~siAskW 314 (422)
+|+||++++--+...+
T Consensus 182 ~iSHR~~Al~~l~~~l 197 (203)
T 3tqu_A 182 AISHRGQALEQLSTVL 197 (203)
T ss_dssp HHSHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5666666665555433
Done!