Query 014574
Match_columns 422
No_of_seqs 69 out of 71
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 14:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014574.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014574hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p8ia1 d.58.55.1 (A:1-115) Pu 17.3 19 0.0014 28.9 1.1 19 373-391 67-85 (115)
2 d1g2ha_ a.4.1.12 (A:) Transcri 16.1 21 0.0015 25.0 0.9 18 115-132 44-61 (61)
3 d1vd6a1 c.1.18.3 (A:8-224) Put 9.8 65 0.0047 25.3 2.2 21 375-397 169-189 (217)
4 d1lfma_ a.3.1.1 (A:) Mitochond 9.3 94 0.0068 21.7 2.7 18 367-384 84-101 (103)
5 d1vp2a_ c.51.4.1 (A:) Putative 9.0 46 0.0033 27.8 0.9 11 237-247 170-180 (189)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 8.2 1.4E+02 0.0099 25.0 3.8 26 111-136 69-94 (447)
7 d1ixra2 b.40.4.2 (A:1-62) DNA 7.8 49 0.0036 23.1 0.5 16 378-393 47-62 (62)
8 d3c2ca_ a.3.1.1 (A:) Cytochrom 7.4 79 0.0058 22.8 1.6 16 368-383 95-110 (112)
9 d1ql3a_ a.3.1.1 (A:) Cytochrom 7.2 1.2E+02 0.0088 22.4 2.6 17 368-384 82-98 (99)
10 d3dhxa1 d.58.18.13 (A:2-100) M 7.1 1.7E+02 0.012 21.5 3.4 25 371-395 74-98 (99)
No 1
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=17.30 E-value=19 Score=28.90 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.7
Q ss_pred hHHHHHHHhhcCCCceEEE
Q 014574 373 IRQALVAYLQHNNGGITLF 391 (422)
Q Consensus 373 kRQALVtYLq~N~~GITvf 391 (422)
.-.++|.+|+-||||.||+
T Consensus 67 ~F~~vv~WL~~nRg~LsVl 85 (115)
T d2p8ia1 67 QFADLVGWLTLNHGALDIF 85 (115)
T ss_dssp HHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHhCCCceEE
Confidence 3567899999999999997
No 2
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=16.14 E-value=21 Score=25.04 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhhhcccce
Q 014574 115 LVGFFILSRFFSKYGLRH 132 (422)
Q Consensus 115 avSf~cLS~~~rkyGLRr 132 (422)
.|+--+|.+.++|||+.|
T Consensus 44 gisr~tL~rKlkk~gi~k 61 (61)
T d1g2ha_ 44 GVSHTAIANKLKQYGIGK 61 (61)
T ss_dssp TSCTHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 456678999999999976
No 3
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=9.76 E-value=65 Score=25.27 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=17.6
Q ss_pred HHHHHHhhcCCCceEEEEEEeeh
Q 014574 375 QALVAYLQHNNGGITLFGFALDR 397 (422)
Q Consensus 375 QALVtYLq~N~~GITvfGf~lDR 397 (422)
+++|..+..+ |+.||.|++|-
T Consensus 169 ~~~v~~~~~~--g~~v~~wTvn~ 189 (217)
T d1vd6a1 169 EEAVAGWRKR--GLFVVAWTVNE 189 (217)
T ss_dssp HHHHHHHHHT--TCEEEEECCCC
T ss_pred HHHHHHHHHC--CCEEEEECCCC
Confidence 5688888865 99999999964
No 4
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=9.25 E-value=94 Score=21.70 Aligned_cols=18 Identities=39% Similarity=0.349 Sum_probs=14.6
Q ss_pred CCchHHhHHHHHHHhhcC
Q 014574 367 EPPSFQIRQALVAYLQHN 384 (422)
Q Consensus 367 ~~~SfqkRQALVtYLq~N 384 (422)
..-|=|+|+++|.||+..
T Consensus 84 ~~ls~~ei~dviAYLkt~ 101 (103)
T d1lfma_ 84 GIKKKGERQDLVAYLKSA 101 (103)
T ss_dssp CCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 345789999999999864
No 5
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 {Thermotoga maritima [TaxId: 2336]}
Probab=8.96 E-value=46 Score=27.81 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=8.8
Q ss_pred hhhhhhHHHHH
Q 014574 237 ATSHRYRFFII 247 (422)
Q Consensus 237 ~ISHRfR~Fil 247 (422)
+||||.|.+--
T Consensus 170 ~iSHR~~A~~k 180 (189)
T d1vp2a_ 170 KISHRSKAFRK 180 (189)
T ss_dssp HHSHHHHHHHH
T ss_pred hcCHHHHHHHH
Confidence 58999998753
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.21 E-value=1.4e+02 Score=24.96 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=16.9
Q ss_pred hhHHHHHHHHhhhhhhhcccceeccc
Q 014574 111 SGLALVGFFILSRFFSKYGLRHLLFL 136 (422)
Q Consensus 111 s~lAavSf~cLS~~~rkyGLRrfLfl 136 (422)
....+++-+-...+..|||.|+.+.+
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 33344555556677789999987643
No 7
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.76 E-value=49 Score=23.15 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=13.0
Q ss_pred HHHhhcCCCceEEEEE
Q 014574 378 VAYLQHNNGGITLFGF 393 (422)
Q Consensus 378 VtYLq~N~~GITvfGf 393 (422)
-||++-...++++|||
T Consensus 47 ~t~~~vrED~~~LyGF 62 (62)
T d1ixra2 47 HTHLLLKEEGLSLYGF 62 (62)
T ss_dssp EECCCCCSSCCCEEEE
T ss_pred EEEEEEecCCCCccCC
Confidence 5677777888999998
No 8
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.36 E-value=79 Score=22.83 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.8
Q ss_pred CchHHhHHHHHHHhhc
Q 014574 368 PPSFQIRQALVAYLQH 383 (422)
Q Consensus 368 ~~SfqkRQALVtYLq~ 383 (422)
..+=|.|.++|.||+.
T Consensus 95 ~ls~qdi~divAYL~t 110 (112)
T d3c2ca_ 95 LTKDDEIENVIAYLKT 110 (112)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4578999999999985
No 9
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=7.20 E-value=1.2e+02 Score=22.45 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.2
Q ss_pred CchHHhHHHHHHHhhcC
Q 014574 368 PPSFQIRQALVAYLQHN 384 (422)
Q Consensus 368 ~~SfqkRQALVtYLq~N 384 (422)
..+=+.|++++.||+..
T Consensus 82 l~~~~d~~dliaYLks~ 98 (99)
T d1ql3a_ 82 LPKIEDRANLIAYLEGQ 98 (99)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 45688999999999875
No 10
>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=7.05 E-value=1.7e+02 Score=21.49 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.1
Q ss_pred HHhHHHHHHHhhcCCCceEEEEEEe
Q 014574 371 FQIRQALVAYLQHNNGGITLFGFAL 395 (422)
Q Consensus 371 fqkRQALVtYLq~N~~GITvfGf~l 395 (422)
=++.|+...||+.+.--+.|-|+++
T Consensus 74 ~~~i~~al~~L~~~~v~vEvlgyV~ 98 (99)
T d3dhxa1 74 QQDTQAAIAWLQEHHVKVEVLGYVL 98 (99)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEeeeec
Confidence 4677888899999999999999987
Done!