BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014575
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 131 LRILPAGIFRLEFLKELDLWGCSKLKTLPE----ISSAG------NIEVMYLNGTAIEEL 180
LR LPA I L L+EL + C +L LPE ++G N++ + L T I L
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 181 PSSIECLSRLSALYLDN-----------------------CKRLKSLPSSLCKLNSLNFI 217
P+SI L L +L + N C L++ P L +
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 218 YLRWCSSLKSLPDELGNLEALDSLIAEG 245
L+ CS+L +LP ++ L L+ L G
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 7/174 (4%)
Query: 71 LVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHL----DKLVNLNLN 126
L ++ + ++ L + +L+++ RAC T+ P + LVNL
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 127 NCK--SLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG-TAIEELPSS 183
+ +R LPA I L+ LK L + P I +E + L G TA+ P
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 184 IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA 237
+ L L L +C L +LP + +L L + LR C +L LP + L A
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 52 LHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPN 110
L W G ++SLP++I + + L S+++ + + L + H KL+++ R C P
Sbjct: 190 LEWTG--IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP- 246
Query: 111 HSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEI 161
+ L L L +C +L LP I RL L++LDL GC L LP +
Sbjct: 247 -PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 135 PAGIFRLEFLKELDLWGCSKLKTLPEISSA-GNIEVMYLNGTAIEELPSSIECLSRLSAL 193
P FRL L+ + + L LP+ +E + L + LP+SI L+RL L
Sbjct: 97 PDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 194 YLDNCKRLKSLPSSLCKLNS---------LNFIYLRWCSSLKSLPDELGNLEALDSL 241
+ C L LP L ++ L + L W + ++SLP + NL+ L SL
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIANLQNLKSL 211
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 123 LNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPS 182
L+L+N + I A IF+ +FL L YLNG ++ ELP+
Sbjct: 229 LDLSNLQIFNI-SANIFKYDFLTRL-----------------------YLNGNSLTELPA 264
Query: 183 SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLI 242
I+ LS L L L + RL SLP+ L L + Y + + + +LP E GNL L L
Sbjct: 265 EIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLG 322
Query: 243 AEGTAIREVYF 253
EG + + +
Sbjct: 323 VEGNPLEKQFL 333
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCS--KLKTLP--EISSAGNIEVMYL 172
L KL LNL+ L+ L AG+F + L EL G + +L +LP ++ +YL
Sbjct: 58 LTKLTWLNLDY-NQLQTLSAGVF--DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 173 NGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLP- 229
G ++ LPS + + L++L L L N +L+S+P+ + KL +L + L + L+S+P
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLS-TNQLQSVPH 172
Query: 230 ---DELGNLEAL 238
D LG L+ +
Sbjct: 173 GAFDRLGKLQTI 184
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCS--KLKTLP--EISSAGNIEVMYL 172
L KL LNL+ L+ L AG+F + L EL G + +L +LP ++ +YL
Sbjct: 58 LTKLTWLNLD-YNQLQTLSAGVF--DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 173 NGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLP- 229
G ++ LPS + + L++L L L N +L+S+P+ + KL +L + L + L+S+P
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLS-TNQLQSVPH 172
Query: 230 ---DELGNLEAL 238
D LG L+ +
Sbjct: 173 GAFDRLGKLQTI 184
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECL 187
C++L IL L +D + L L ++ + N ++ ++ P++ L
Sbjct: 55 CRNLTIL---WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-------PATFHGL 104
Query: 188 SRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD----ELGNLEALDSLIA 243
RL L+LD C + P L +L ++YL+ ++L++LPD +LGNL L
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 244 EGTAIREVYF--FQSSGRLLLPGNEI 267
+++ E F S RLLL N +
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRV 189
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECL 187
C++L IL L +D + L L ++ + N ++ ++ P++ L
Sbjct: 54 CRNLTIL---WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-------PATFHGL 103
Query: 188 SRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD----ELGNLEALDSLIA 243
RL L+LD C + P L +L ++YL+ ++L++LPD +LGNL L
Sbjct: 104 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 244 EGTAIREVYF--FQSSGRLLLPGNEI 267
+++ E F S RLLL N +
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRV 188
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 33/162 (20%)
Query: 119 KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 178
K+++++ N+ K L LP LEF+ G ++L+ LPE+ + + +Y + +++
Sbjct: 156 KIIDVDNNSLKKLPDLPPS---LEFIA----AGNNQLEELPELQNLPFLTAIYADNNSLK 208
Query: 179 ELPS-------------------SIECLSRLSALYLDN--CKRLKSLPSSLCKLNSLNFI 217
+LP ++ L L+ +Y DN K L LP SL LN +
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALN----V 264
Query: 218 YLRWCSSLKSLPDELGNLEALDSLIAEGTAI-REVYFFQSSG 258
+ + L LP L L+ +++ + + + +Y+ +S
Sbjct: 265 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 106 TKSPNHSLTLHLDKLVNLNLNNCKSLRI--LPAGIFRLEFLKELDLWGCSKLKTL 158
T+ P+H++ HLD L++ + LRI +P F K+LDLW S L ++
Sbjct: 4 TRFPDHAIWTHLDLTSALSVKDPTLLRIKIVPVQPFIANSRKQLDLWASSHLLSM 58
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRL-KSLPSSLCKLNSLNFIYLRWCSS 224
N+++ LN +PSS+ L L+ LY+ L +P ++ KL L+++Y+ +
Sbjct: 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 225 LKSLPDELGNLEALDSL 241
++PD L ++ L +L
Sbjct: 114 SGAIPDFLSQIKTLVTL 130
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 144 LKELDLWGCSKLKTLPEISSAGNI---EVMYLNG--TAIEELPSSIECLSRLSALYLDNC 198
+ LDL G + K P SS N+ +Y+ G + +P +I L++L LY+ +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 199 KRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248
++P L ++ +L + + + +LP + +L L + +G I
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 124 NLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS 183
+ +C++L IL L +D + L L ++ + N ++ ++ P++
Sbjct: 50 SFQSCRNLTIL---WLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD-------PTT 99
Query: 184 IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD----ELGNLEAL 238
L L L+LD C + P L +L ++YL+ ++L++LPD +LGNL L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNNLQALPDNTFRDLGNLTHL 157
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 126 NNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIE 185
N SL +LP G+ L + L LP + S + +++ G + LP
Sbjct: 91 NQLTSLPVLPPGLLELSIF-------SNPLTHLPALPSG--LCKLWIFGNQLTSLPVLPP 141
Query: 186 CLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA 243
L LS + + L +LPS LCKL + Y +SL LP L L D+ +A
Sbjct: 142 GLQELS-VSDNQLASLPALPSELCKL----WAYNNQLTSLPMLPSGLQELSVSDNQLA 194
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 4 IKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVG 43
IK +YL P +T++ L + + ++DGE++ ++ ++G
Sbjct: 194 IKYLYLTPQDYTRISSLNSVHCKHVEEDGESRYVITDIIG 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,558,877
Number of Sequences: 62578
Number of extensions: 578178
Number of successful extensions: 1157
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 34
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)