Query 014575
Match_columns 422
No_of_seqs 364 out of 3216
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.9E-41 1.3E-45 374.6 33.2 394 1-412 541-1101(1153)
2 PLN00113 leucine-rich repeat r 99.9 1.4E-22 3.1E-27 225.1 14.2 231 11-250 86-322 (968)
3 PLN00113 leucine-rich repeat r 99.9 7.3E-22 1.6E-26 219.5 13.0 232 8-249 108-345 (968)
4 KOG0444 Cytoskeletal regulator 99.8 2.8E-22 6.2E-27 198.6 -3.6 235 9-253 95-356 (1255)
5 KOG4194 Membrane glycoprotein 99.8 4.8E-20 1E-24 181.9 5.4 264 9-285 140-477 (873)
6 KOG0444 Cytoskeletal regulator 99.8 7.4E-20 1.6E-24 181.6 -0.9 226 18-252 7-261 (1255)
7 PLN03210 Resistant to P. syrin 99.7 7E-17 1.5E-21 181.4 16.9 117 109-228 793-909 (1153)
8 KOG0472 Leucine-rich repeat pr 99.7 4.8E-20 1E-24 174.8 -9.6 206 39-252 105-313 (565)
9 KOG4194 Membrane glycoprotein 99.7 7E-18 1.5E-22 166.7 4.1 244 3-253 87-358 (873)
10 KOG0472 Leucine-rich repeat pr 99.6 4.5E-19 9.7E-24 168.3 -11.2 224 18-253 45-292 (565)
11 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.3E-22 141.5 -5.0 169 59-233 23-193 (264)
12 KOG0617 Ras suppressor protein 99.6 3.4E-17 7.4E-22 139.3 -5.4 161 47-211 33-195 (264)
13 PRK15387 E3 ubiquitin-protein 99.6 1.5E-14 3.2E-19 153.3 12.4 178 48-251 283-460 (788)
14 PRK15370 E3 ubiquitin-protein 99.5 6.8E-14 1.5E-18 148.9 11.7 206 18-253 178-384 (754)
15 PRK15370 E3 ubiquitin-protein 99.5 2.6E-14 5.7E-19 152.0 8.2 206 18-253 199-405 (754)
16 PRK15387 E3 ubiquitin-protein 99.5 1.8E-13 3.9E-18 145.1 13.7 197 19-253 223-419 (788)
17 KOG0618 Serine/threonine phosp 99.5 1.9E-15 4E-20 156.7 -3.4 223 12-247 258-487 (1081)
18 KOG0618 Serine/threonine phosp 99.4 1.1E-14 2.4E-19 151.1 -2.6 198 47-251 241-467 (1081)
19 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.7E-18 136.7 -0.5 194 51-253 54-251 (722)
20 cd00116 LRR_RI Leucine-rich re 99.3 4.8E-13 1E-17 129.8 0.5 239 11-251 16-293 (319)
21 KOG4237 Extracellular matrix p 99.3 1.7E-12 3.6E-17 123.8 3.3 105 47-152 67-198 (498)
22 cd00116 LRR_RI Leucine-rich re 99.3 5.9E-13 1.3E-17 129.2 0.3 236 13-248 46-319 (319)
23 KOG4237 Extracellular matrix p 99.1 2E-12 4.3E-17 123.3 -3.6 85 114-199 270-357 (498)
24 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.6E-15 116.8 6.1 176 47-253 116-294 (394)
25 KOG1259 Nischarin, modulator o 99.0 4.2E-11 9E-16 110.7 0.2 137 114-254 280-417 (490)
26 COG4886 Leucine-rich repeat (L 99.0 4.4E-10 9.5E-15 112.7 5.3 186 11-232 109-297 (394)
27 PLN03150 hypothetical protein; 98.9 2.8E-09 6.1E-14 112.7 8.4 106 143-248 419-527 (623)
28 PF14580 LRR_9: Leucine-rich r 98.9 1.7E-09 3.7E-14 95.2 4.1 123 115-242 16-146 (175)
29 PLN03150 hypothetical protein; 98.9 4.7E-09 1E-13 111.0 7.7 84 166-249 419-503 (623)
30 KOG0532 Leucine-rich repeat (L 98.8 2.1E-10 4.6E-15 114.1 -4.1 179 47-233 75-254 (722)
31 PF14580 LRR_9: Leucine-rich r 98.7 7.2E-09 1.6E-13 91.3 4.2 119 130-253 8-130 (175)
32 KOG3207 Beta-tubulin folding c 98.7 7.9E-10 1.7E-14 107.0 -2.1 199 47-249 121-339 (505)
33 KOG4658 Apoptotic ATPase [Sign 98.7 2.6E-09 5.5E-14 116.0 -0.5 84 8-97 561-647 (889)
34 KOG3207 Beta-tubulin folding c 98.7 3.8E-09 8.3E-14 102.4 0.5 200 15-224 118-338 (505)
35 KOG1259 Nischarin, modulator o 98.6 6.5E-09 1.4E-13 96.4 -1.7 127 69-226 284-413 (490)
36 KOG4658 Apoptotic ATPase [Sign 98.5 6.4E-08 1.4E-12 105.2 4.7 80 141-220 570-650 (889)
37 PRK15386 type III secretion pr 98.5 2.9E-07 6.2E-12 90.8 8.3 118 114-246 48-187 (426)
38 PRK15386 type III secretion pr 98.5 4.7E-07 1E-11 89.4 8.6 131 47-222 52-187 (426)
39 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 4E-12 67.6 3.8 59 165-223 1-60 (61)
40 KOG1909 Ran GTPase-activating 98.4 3.9E-08 8.5E-13 93.0 -1.6 213 13-249 25-283 (382)
41 PF13855 LRR_8: Leucine rich r 98.3 7.6E-07 1.6E-11 64.3 3.3 60 188-248 1-61 (61)
42 KOG1909 Ran GTPase-activating 98.2 1.3E-07 2.9E-12 89.5 -2.8 66 12-83 86-171 (382)
43 KOG0531 Protein phosphatase 1, 98.2 3.2E-07 7E-12 92.7 -0.8 37 214-251 234-270 (414)
44 KOG2120 SCF ubiquitin ligase, 98.1 7.1E-08 1.5E-12 89.5 -5.5 171 70-246 186-373 (419)
45 KOG0531 Protein phosphatase 1, 98.0 5.4E-07 1.2E-11 91.1 -2.0 132 114-252 114-248 (414)
46 KOG1859 Leucine-rich repeat pr 98.0 1E-07 2.2E-12 97.7 -8.7 172 67-250 107-293 (1096)
47 KOG1859 Leucine-rich repeat pr 97.9 4.7E-07 1E-11 93.0 -4.8 168 47-224 109-291 (1096)
48 KOG3665 ZYG-1-like serine/thre 97.9 6.1E-06 1.3E-10 87.8 2.3 131 117-249 121-263 (699)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.9E-10 53.0 3.6 40 165-205 1-40 (44)
50 KOG4579 Leucine-rich repeat (L 97.8 1.2E-06 2.5E-11 72.8 -3.5 86 165-252 53-139 (177)
51 PF12799 LRR_4: Leucine Rich r 97.7 4.4E-05 9.5E-10 51.1 3.4 41 212-253 1-41 (44)
52 KOG4579 Leucine-rich repeat (L 97.3 5.2E-06 1.1E-10 69.0 -5.5 62 120-182 79-140 (177)
53 KOG1644 U2-associated snRNP A' 97.3 0.00055 1.2E-08 60.7 6.1 101 118-221 42-149 (233)
54 KOG2982 Uncharacterized conser 97.3 0.00015 3.2E-09 67.9 2.2 36 208-243 245-286 (418)
55 KOG2120 SCF ubiquitin ligase, 97.1 1.9E-05 4.2E-10 73.7 -5.2 134 114-247 206-349 (419)
56 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.8E-08 58.5 5.7 106 141-248 41-152 (233)
57 KOG2982 Uncharacterized conser 96.9 0.00022 4.9E-09 66.7 0.2 91 109-199 62-157 (418)
58 KOG3665 ZYG-1-like serine/thre 96.8 0.00075 1.6E-08 72.1 3.0 108 114-223 144-261 (699)
59 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.5E-08 60.0 2.8 85 140-226 41-130 (260)
60 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.6E-08 60.9 1.3 102 118-222 43-153 (260)
61 KOG4341 F-box protein containi 96.4 0.00013 2.8E-09 71.2 -5.7 131 116-246 292-436 (483)
62 KOG2123 Uncharacterized conser 96.2 0.00023 5.1E-09 66.0 -4.9 99 117-218 18-123 (388)
63 PF00560 LRR_1: Leucine Rich R 96.1 0.0025 5.4E-08 35.7 0.9 21 166-186 1-21 (22)
64 KOG2123 Uncharacterized conser 95.9 0.00035 7.7E-09 64.8 -5.2 100 140-242 17-123 (388)
65 PF07725 LRR_3: Leucine Rich R 95.7 0.0069 1.5E-07 32.8 1.5 20 70-89 1-20 (20)
66 COG5238 RNA1 Ran GTPase-activa 95.6 0.0065 1.4E-07 56.5 2.0 132 114-249 88-255 (388)
67 COG5238 RNA1 Ran GTPase-activa 95.4 0.0018 4E-08 60.0 -2.3 229 12-254 52-321 (388)
68 KOG4341 F-box protein containi 95.1 0.002 4.3E-08 63.1 -3.3 38 210-247 370-412 (483)
69 PF13306 LRR_5: Leucine rich r 94.9 0.15 3.3E-06 41.9 8.1 62 8-78 2-67 (129)
70 PF13306 LRR_5: Leucine rich r 94.8 0.13 2.9E-06 42.2 7.7 100 114-221 8-112 (129)
71 PF13504 LRR_7: Leucine rich r 94.6 0.023 5E-07 29.6 1.4 16 166-181 2-17 (17)
72 KOG1947 Leucine rich repeat pr 93.6 0.013 2.8E-07 59.9 -1.4 131 114-244 184-329 (482)
73 PF13504 LRR_7: Leucine rich r 93.5 0.049 1.1E-06 28.3 1.4 16 237-252 2-17 (17)
74 PF00560 LRR_1: Leucine Rich R 92.1 0.099 2.1E-06 29.1 1.5 17 71-87 2-18 (22)
75 smart00370 LRR Leucine-rich re 92.1 0.1 2.3E-06 30.2 1.7 21 164-184 1-21 (26)
76 smart00369 LRR_TYP Leucine-ric 92.1 0.1 2.3E-06 30.2 1.7 21 164-184 1-21 (26)
77 KOG1947 Leucine rich repeat pr 91.9 0.045 9.7E-07 55.9 -0.1 111 110-220 206-329 (482)
78 smart00370 LRR Leucine-rich re 88.9 0.33 7.1E-06 28.0 1.8 19 235-253 1-19 (26)
79 smart00369 LRR_TYP Leucine-ric 88.9 0.33 7.1E-06 28.0 1.8 19 235-253 1-19 (26)
80 KOG0473 Leucine-rich repeat pr 87.3 0.0082 1.8E-07 54.6 -8.4 84 139-223 39-122 (326)
81 KOG0473 Leucine-rich repeat pr 86.4 0.021 4.6E-07 52.0 -6.3 92 156-249 31-124 (326)
82 KOG3864 Uncharacterized conser 82.1 0.25 5.4E-06 44.2 -1.5 89 61-174 92-185 (221)
83 smart00364 LRR_BAC Leucine-ric 78.1 1.4 3E-05 25.7 1.2 19 236-254 2-20 (26)
84 KOG4308 LRR-containing protein 75.9 0.061 1.3E-06 55.2 -8.3 34 49-82 89-128 (478)
85 smart00365 LRR_SD22 Leucine-ri 72.8 2.6 5.7E-05 24.5 1.5 16 165-180 2-17 (26)
86 KOG3864 Uncharacterized conser 68.7 0.95 2.1E-05 40.6 -1.4 35 117-151 150-185 (221)
87 PF13516 LRR_6: Leucine Rich r 64.1 3.6 7.9E-05 23.0 0.9 14 165-178 2-15 (24)
88 smart00367 LRR_CC Leucine-rich 58.4 7.6 0.00016 22.2 1.6 15 212-226 2-16 (26)
89 smart00368 LRR_RI Leucine rich 46.8 14 0.0003 21.7 1.4 13 166-178 3-15 (28)
90 KOG3763 mRNA export factor TAP 40.7 8.4 0.00018 39.8 -0.3 66 163-228 216-286 (585)
91 KOG3763 mRNA export factor TAP 27.6 33 0.00072 35.6 1.5 77 140-218 216-307 (585)
92 KOG4308 LRR-containing protein 24.1 3.5 7.5E-05 42.5 -6.3 130 120-250 89-247 (478)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.9e-41 Score=374.56 Aligned_cols=394 Identities=31% Similarity=0.499 Sum_probs=260.2
Q ss_pred CCCeeeeeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC--CCeeEEEecCCCCCCCCCCCCCCCceEEEccC
Q 014575 1 MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF--AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPH 78 (422)
Q Consensus 1 ~s~~~~~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~--~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~ 78 (422)
+++++++++++++|.+|++|++|+++++.........+++|+++.. .+||+|+|.+|+++++|..|.+++|++|+|++
T Consensus 541 ~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~ 620 (1153)
T PLN03210 541 IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQG 620 (1153)
T ss_pred cCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcC
Confidence 4567789999999999999999999887544344556789999988 78999999999999999999999999999999
Q ss_pred CccccccccccCCcchHHHHHh----hccCCCCCCcc-----------------hhhhcCCCCcEEeccCCCCCcccccc
Q 014575 79 GNIQQLWDDVEHNGKLKQIISR----ACNFFTKSPNH-----------------SLTLHLDKLVNLNLNNCKSLRILPAG 137 (422)
Q Consensus 79 ~~l~~l~~~~~~l~~L~~l~~~----~~~~~~~~~~~-----------------~li~~l~~L~~L~L~~~~~l~~lp~~ 137 (422)
|+++.+|.++..+++|+.+... +..+++.+.++ ..++.+++|+.|++++|..++.+|..
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 9999999999999999887322 23333333222 22566677777777777777777765
Q ss_pred CCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCc---------------------------------------
Q 014575 138 IFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE--------------------------------------- 178 (422)
Q Consensus 138 i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~--------------------------------------- 178 (422)
+ ++++|+.|++++|..++.+|.+. ++|+.|+|++|.++
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred C-CCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 5 67777777777776665555332 13444444444433
Q ss_pred ---------------ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCC--------------
Q 014575 179 ---------------ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLP-------------- 229 (422)
Q Consensus 179 ---------------~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp-------------- 229 (422)
++|.+++++++|+.|++++|+.++.+|..+ .+++|+.|++++|..+..+|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 455556666667777777766666666654 56666666666665544433
Q ss_pred ------cccCCCCCCCEEeccCc-ccccccc-------------------------------------------------
Q 014575 230 ------DELGNLEALDSLIAEGT-AIREVYF------------------------------------------------- 253 (422)
Q Consensus 230 ------~~~~~l~~L~~L~l~~n-~l~~lp~------------------------------------------------- 253 (422)
..+..+++|+.|++++| .++.+|.
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~ 936 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCIN 936 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccc
Confidence 23334444555544442 2222211
Q ss_pred c------------c-c--cccccCCCCcCCCccccccCcceeEE-EecCCCCCCCCCccceEEEEEEEcccccccccccc
Q 014575 254 F------------Q-S--SGRLLLPGNEIPMWFSFQSLGSSSIT-LKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRR 317 (422)
Q Consensus 254 f------------~-~--~~~~~lpg~~iP~wf~~~~~g~s~i~-~~lp~~~w~~~~~~~g~~~c~v~~~~~~~~~~~~~ 317 (422)
| + . ...+.+||.++|+||.|++.|++ ++ +.+|+ .| ....+.||++|+|+++.... +....
T Consensus 937 f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~s-l~~i~l~~-~~-~~~~~~~f~~c~v~~~~~~~-~~~~~ 1012 (1153)
T PLN03210 937 FINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGAS-LTNIPLLH-IS-PCQPFFRFRACAVVDSESFF-IISVS 1012 (1153)
T ss_pred cccccCCCchhhhcccccceEEECCCccCchhccCCcccce-eeeeccCC-cc-cCCCccceEEEEEEecCccc-cCCCc
Confidence 0 0 0 01124899999999999999999 88 99854 26 66789999999999988665 33346
Q ss_pred eEEEEEE-ecCCCCCcccCccCceeceecCcccCCeEEEEEeeCCCcccc---ccccCCcceEEEEEEEEeccCccccCC
Q 014575 318 FHLFCEF-MKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFS---AFRKHNCDHVAVKFYLEDVNNQHERLD 393 (422)
Q Consensus 318 ~~~~c~~-~~~~~~~~~~~~~~~~~~~~~~~~~sdH~~l~y~~~~~~~~~---~~~~~~~~~~~f~f~~~~~~~~~~~~~ 393 (422)
+.+.|.| |++..|+.++.. .....|. .....+|++++.. +. ...+ ...+..|.+|+++|.+.+. . .
T Consensus 1013 ~~~~~~c~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~f~~~~~---~---~ 1082 (1153)
T PLN03210 1013 FDIQVCCRFIDRLGNHFDSP-YQPHVFS-VTKKGSHLVIFDC-CF-PLNEDNAPLAELNYDHVDIQFRLTNK---N---S 1082 (1153)
T ss_pred eeEEEEEEEECCCCCccccC-CCceeEe-eeccccceEEecc-cc-cccccccchhccCCceeeEEEEEecC---C---C
Confidence 7888988 888777654311 0000011 1223445554321 11 1111 1222356799999988762 1 2
Q ss_pred ceeEEEeeeEEEeecCCCC
Q 014575 394 CCPVKKCGIHLLYAPDSTE 412 (422)
Q Consensus 394 ~~~vk~CGv~l~y~~d~~~ 412 (422)
.++||+||||++|+.+..+
T Consensus 1083 ~~~~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210 1083 QLKLKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred CeEEEeeeEEEeccCCCcc
Confidence 3799999999999666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.4e-22 Score=225.05 Aligned_cols=231 Identities=18% Similarity=0.175 Sum_probs=193.6
Q ss_pred hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCC-C-CCeeEEEecCCCCC-CCCCCCCCCCceEEEccCCcccc-ccc
Q 014575 11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPG-F-AEVRYLHWYGYPLK-SLPSNIHPEKLVSIEMPHGNIQQ-LWD 86 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~-~-~~Lr~L~l~~~~l~-~lP~~~~~~~L~~L~L~~~~l~~-l~~ 86 (422)
+.+|.+|++|+.|++++|.+.+. +|.++. . .+||+|++++|.+. .+|. ..+++|++|++++|.+.+ ++.
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~------ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~ 158 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGP------IPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPN 158 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCc------CChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCCh
Confidence 56899999999999999876543 676655 3 89999999999876 4443 457899999999999974 566
Q ss_pred cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCC
Q 014575 87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAG 165 (422)
Q Consensus 87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~ 165 (422)
.+..+++|+++....+.+.. ..+..++.+++|++|+|++|...+.+|..+.++++|++|++++|...+.+| .++.++
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred HHhcCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 78888888888444333322 234447889999999999998888899989999999999999998887888 588999
Q ss_pred CcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575 166 NIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE 244 (422)
Q Consensus 166 ~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~ 244 (422)
+|++|+|++|.++ .+|..++.+++|+.|++++|+..+.+|..+..+++|+.|++++|...+.+|..+.++++|+.|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 9999999999987 788899999999999999988888899999999999999999998888999999999999999999
Q ss_pred Cccccc
Q 014575 245 GTAIRE 250 (422)
Q Consensus 245 ~n~l~~ 250 (422)
+|.+..
T Consensus 317 ~n~~~~ 322 (968)
T PLN00113 317 SNNFTG 322 (968)
T ss_pred CCccCC
Confidence 998763
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=7.3e-22 Score=219.46 Aligned_cols=232 Identities=19% Similarity=0.214 Sum_probs=133.5
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCcccc-
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLK-SLPSNI-HPEKLVSIEMPHGNIQQ- 83 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~-~lP~~~-~~~~L~~L~L~~~~l~~- 83 (422)
.+++..|.++++|++|++++|.+.+. +|. .. ++|++|++++|.+. .+|..+ .+++|++|+|++|.+.+
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~------~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGS------IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccc------cCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 35566777999999999999876533 222 12 56677777766654 455555 56667777776666653
Q ss_pred ccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCC
Q 014575 84 LWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EIS 162 (422)
Q Consensus 84 l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~ 162 (422)
++..+..+++|++|....+.+. ...+..++.+++|++|+|++|...+.+|..+.++++|++|++++|...+.+| .++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLV--GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCc--CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 4445555666665533322221 1122335556666666666665555556555566666666666655555555 355
Q ss_pred CCCCcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEE
Q 014575 163 SAGNIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL 241 (422)
Q Consensus 163 ~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L 241 (422)
.+++|+.|+|++|.++ .+|.++..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 5556666666655554 455555555555555555555555555555555555555555555555555555555555555
Q ss_pred eccCcccc
Q 014575 242 IAEGTAIR 249 (422)
Q Consensus 242 ~l~~n~l~ 249 (422)
++++|.+.
T Consensus 338 ~L~~n~l~ 345 (968)
T PLN00113 338 QLWSNKFS 345 (968)
T ss_pred ECcCCCCc
Confidence 55555544
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.8e-22 Score=198.62 Aligned_cols=235 Identities=17% Similarity=0.255 Sum_probs=169.7
Q ss_pred eChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccccc
Q 014575 9 LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQLW 85 (422)
Q Consensus 9 l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l~ 85 (422)
|+++ +-+|..|..|+|+.|.+. ..|.++++ .++-.|+++.|++.++|... ++..|-.|||++|+++.++
T Consensus 95 iP~d-iF~l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 95 IPTD-IFRLKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred CCch-hcccccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence 4444 557899999999998743 37889999 99999999999999999876 8899999999999999999
Q ss_pred ccccCCcchHHH--------HHhhccCCCCCC---------------cchhhhcCCCCcEEeccCCCCCccccccCCCCC
Q 014575 86 DDVEHNGKLKQI--------ISRACNFFTKSP---------------NHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLE 142 (422)
Q Consensus 86 ~~~~~l~~L~~l--------~~~~~~~~~~~~---------------~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 142 (422)
+.+..+.+|+.| ...+..+|.... .|..+..+.+|..+|++.| .+..+|..+.++.
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLR 245 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhh
Confidence 888888777776 122222222211 1112566777777788775 5667777777888
Q ss_pred CCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCC-CCcccccccCCCCCcEEEccC
Q 014575 143 FLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKR-LKSLPSSLCKLNSLNFIYLRW 221 (422)
Q Consensus 143 ~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~-l~~lp~~l~~l~~L~~L~Ls~ 221 (422)
+|+.|+||+|.....--..+.-.+|++|+|+.|+++.+|..+..|++|+.|++.+|+. ...||+.|++|..|+.+.+++
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 8888888887644332234444567777777777777777777777777777776543 246777777777777777765
Q ss_pred CCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 222 CSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 222 c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
+.++-+|+.+++|..|+.|.|++|.+-++|+
T Consensus 326 -N~LElVPEglcRC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 326 -NKLELVPEGLCRCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred -cccccCchhhhhhHHHHHhcccccceeechh
Confidence 5677777777777777777777777777765
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=4.8e-20 Score=181.86 Aligned_cols=264 Identities=20% Similarity=0.227 Sum_probs=150.7
Q ss_pred eChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccc
Q 014575 9 LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 9 l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~ 86 (422)
++.++++-++-||.|+|+.|.++ .+..|......++++|++.+|.+..+-.. | .+.+|..|.|+.|+|+.++.
T Consensus 140 v~se~L~~l~alrslDLSrN~is-----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 140 VTSEELSALPALRSLDLSRNLIS-----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred ccHHHHHhHhhhhhhhhhhchhh-----cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence 44555555566666666665421 11111111114455555555555544332 2 34455555555555555443
Q ss_pred -------------------------cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCC
Q 014575 87 -------------------------DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRL 141 (422)
Q Consensus 87 -------------------------~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l 141 (422)
.++.+++|+.+....+++..+..-. |..|.++++|+|+.|+....--..+++|
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc--eeeecccceeecccchhhhhhccccccc
Confidence 3344444444433333332222111 6678888888888887666666677888
Q ss_pred CCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCC------------------------CCCCEEec
Q 014575 142 EFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECL------------------------SRLSALYL 195 (422)
Q Consensus 142 ~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l------------------------~~L~~L~L 195 (422)
++|+.|+||+|.+.+.-+ .++-.++|+.|+|+.|+|+++++ ++..| ++|++|+|
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 888888888887655444 45556688888888888887764 34444 45555555
Q ss_pred CCCCCCCcccc---cccCCCCCcEEEccCCCCCCCCC-cccCCCCCCCEEeccCcccccccc--c---------------
Q 014575 196 DNCKRLKSLPS---SLCKLNSLNFIYLRWCSSLKSLP-DELGNLEALDSLIAEGTAIREVYF--F--------------- 254 (422)
Q Consensus 196 ~~~~~l~~lp~---~l~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~lp~--f--------------- 254 (422)
+.|...+.+-+ .+.++++|+.|++.|| .++.+| ..+..+++|++|+|.+|.|..+.. |
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSF 451 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccce
Confidence 55443333322 2556777777777774 445555 456777888888888887776643 2
Q ss_pred cccccccCCCCcCCCccccccCcceeEEEec
Q 014575 255 QSSGRLLLPGNEIPMWFSFQSLGSSSITLKM 285 (422)
Q Consensus 255 ~~~~~~~lpg~~iP~wf~~~~~g~s~i~~~l 285 (422)
...|++ .-++.|+-.....++ +....
T Consensus 452 lCDCql----~Wl~qWl~~~~lq~s-v~a~C 477 (873)
T KOG4194|consen 452 LCDCQL----KWLAQWLYRRKLQSS-VIAKC 477 (873)
T ss_pred EEeccH----HHHHHHHHhcccccc-eeeec
Confidence 223333 345666655555555 66555
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=7.4e-20 Score=181.64 Aligned_cols=226 Identities=23% Similarity=0.319 Sum_probs=181.8
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchH
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLK 95 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 95 (422)
+-.|=.++++|.++|. .+|.+..- +++++|.+....+..+|... .+.+|+.|.|.+|++..+......++.|+
T Consensus 7 pFVrGvDfsgNDFsg~-----~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGD-----RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ceeecccccCCcCCCC-----cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 3445567888877654 48888777 99999999999999999988 88999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC--CCCCCCcCEEEee
Q 014575 96 QIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLN 173 (422)
Q Consensus 96 ~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~ 173 (422)
.+....+++...+.++. |..+..|..|||++| .+...|..+.+-+++-.|+||+|+ +..+|. +.+++-|-.|+|+
T Consensus 82 sv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred HHhhhccccccCCCCch-hcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccc
Confidence 99877777777766666 668999999999997 577888888888899999999976 566663 6777888888889
Q ss_pred CccCcccCccccCCCCCCEEecCCCCC-------------------------CCcccccccCCCCCcEEEccCCCCCCCC
Q 014575 174 GTAIEELPSSIECLSRLSALYLDNCKR-------------------------LKSLPSSLCKLNSLNFIYLRWCSSLKSL 228 (422)
Q Consensus 174 ~n~i~~lp~~i~~l~~L~~L~L~~~~~-------------------------l~~lp~~l~~l~~L~~L~Ls~c~~l~~l 228 (422)
+|.+..+|+.+..|..|++|.|++|.. +..+|.++..+.+|..+|+|. +.+..+
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v 237 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIV 237 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcc
Confidence 998888888888888888888887642 224667777777888888875 567777
Q ss_pred CcccCCCCCCCEEeccCccccccc
Q 014575 229 PDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 229 p~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
|+.+-++.+|+.|+|++|.|+++.
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~ 261 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELN 261 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeee
Confidence 777777777777777777666543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=7e-17 Score=181.44 Aligned_cols=117 Identities=40% Similarity=0.618 Sum_probs=106.3
Q ss_pred CcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCC
Q 014575 109 PNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLS 188 (422)
Q Consensus 109 ~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~ 188 (422)
..|..++++++|+.|+|++|..++.+|..+ ++++|+.|++++|..+..+|.+. ++|+.|+|++|+|+++|.+++.++
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~--~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS--TNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc--cccCEeECCCCCCccChHHHhcCC
Confidence 345558899999999999999999999877 89999999999999998888765 489999999999999999999999
Q ss_pred CCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCC
Q 014575 189 RLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSL 228 (422)
Q Consensus 189 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~l 228 (422)
+|+.|+|++|+.+..+|..+..+++|+.+++++|..+..+
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 9999999999999999999999999999999999887644
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=4.8e-20 Score=174.83 Aligned_cols=206 Identities=27% Similarity=0.347 Sum_probs=170.0
Q ss_pred EccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhc
Q 014575 39 SYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLH 116 (422)
Q Consensus 39 ~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~ 116 (422)
.+|+.+.. .+|+.|+.+.|.++.+|+++ .+-.|..++..+|++..+++++..+.+|..+....++.... +++.+.
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l--~~~~i~- 181 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL--PENHIA- 181 (565)
T ss_pred hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhC--CHHHHH-
Confidence 35665555 77777777777888777776 66777888888888888887777777776664444333333 233344
Q ss_pred CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCcccc-CCCCCCEEec
Q 014575 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIE-CLSRLSALYL 195 (422)
Q Consensus 117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~-~l~~L~~L~L 195 (422)
++.|++||...| .++++|..++.+.+|..|+|..|. +..+|+|++++.|++|+++.|.|+.+|..+. ++.+|..|+|
T Consensus 182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence 889999999886 789999999999999999999964 7889999999999999999999999998875 9999999999
Q ss_pred CCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 196 DNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 196 ~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
.+ +.+.++|+.+..+.+|.+||+|+ +.+..+|-.++++ .|+.|-+.||.++++-
T Consensus 260 Rd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 260 RD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred cc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchHHHH
Confidence 99 57899999999999999999997 5778899999999 8999999999998664
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=7e-18 Score=166.72 Aligned_cols=244 Identities=14% Similarity=0.030 Sum_probs=110.7
Q ss_pred CeeeeeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCC
Q 014575 3 RIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHG 79 (422)
Q Consensus 3 ~~~~~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~ 79 (422)
.++--++....|.++++|+.+++.+|.+. .+|....- .+|+.|.+.+|-+.++.+.- .+..|+.|||+.|
T Consensus 87 nNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 87 NNKLSHIDFEFFYNLPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred ccccccCcHHHHhcCCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 33444677888888899998888887642 23433333 44555555555544443322 2334444555555
Q ss_pred ccccccccccCC-cchHHHHHhhccCCCCCCc----------------------chhhhcCCCCcEEeccCCCCCccccc
Q 014575 80 NIQQLWDDVEHN-GKLKQIISRACNFFTKSPN----------------------HSLTLHLDKLVNLNLNNCKSLRILPA 136 (422)
Q Consensus 80 ~l~~l~~~~~~l-~~L~~l~~~~~~~~~~~~~----------------------~~li~~l~~L~~L~L~~~~~l~~lp~ 136 (422)
.|..++.....- .++++|....+.+.+...- +..|.+|++|+.|+|..|.....-..
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 444443322211 3344432222222222211 11133344444444444432222222
Q ss_pred cCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCC
Q 014575 137 GIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSL 214 (422)
Q Consensus 137 ~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 214 (422)
.|.+|++|+.|.|..|...+.-. .|-.+.++++|+|..|+++.+.. ++.+|++|+.|+|++|...+.-+++....++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 33344444444444433222222 23334445555555555544432 34445555555555544333334444445555
Q ss_pred cEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 215 NFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 215 ~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
+.|+|+.|+...--++.+..++.|++|+|++|++..+.+
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 555555543333333344445555555555555544433
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=4.5e-19 Score=168.32 Aligned_cols=224 Identities=25% Similarity=0.291 Sum_probs=151.2
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchH
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLK 95 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 95 (422)
..|+.|.+++|.. .++..++.. ..|.+|.++.+.+..+|+.+ .++.++.++.++|++.++++.+..+.+++
T Consensus 45 v~l~~lils~N~l-------~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDL-------EVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCch-------hhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 4455555555432 223344444 55666666666666666655 55566666666666666666665555555
Q ss_pred HHHHhhccCC--------------------CCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCC
Q 014575 96 QIISRACNFF--------------------TKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL 155 (422)
Q Consensus 96 ~l~~~~~~~~--------------------~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l 155 (422)
.+.....+.. ..+..|.-++++.+|..|++.+|+.....|..+ +++.|+.||...|- +
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~-L 195 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNL-L 195 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhh-h
Confidence 5511111111 111222236667777777777764443333433 57788888877754 4
Q ss_pred CCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccccccc-CCCCCcEEEccCCCCCCCCCcccC
Q 014575 156 KTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLC-KLNSLNFIYLRWCSSLKSLPDELG 233 (422)
Q Consensus 156 ~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~c~~l~~lp~~~~ 233 (422)
+.+| +++.|.+|+-|+|..|.|..+| .|+.+..|++|+++. +.+..+|...+ ++.+|..||+.. +.+++.|+.+.
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~c 272 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEIC 272 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHH
Confidence 4444 6888888888888888888888 677888888888887 56778887765 899999999999 68899999999
Q ss_pred CCCCCCEEeccCcccccccc
Q 014575 234 NLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 234 ~l~~L~~L~l~~n~l~~lp~ 253 (422)
-+.+|+.||+++|.|+.+|.
T Consensus 273 lLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred HhhhhhhhcccCCccccCCc
Confidence 99999999999999999986
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.5e-17 Score=141.48 Aligned_cols=169 Identities=24% Similarity=0.316 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccC
Q 014575 59 LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGI 138 (422)
Q Consensus 59 l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i 138 (422)
+..+|.-|+++++..|.+++|+++-.++.+..+.+|+.+...-+.+.++.. -++.+++|+.|++.-| .+..+|..+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~---~issl~klr~lnvgmn-rl~~lprgf 98 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPT---SISSLPKLRILNVGMN-RLNILPRGF 98 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcCh---hhhhchhhhheecchh-hhhcCcccc
Confidence 334556666666666666666666666554333333332111111111111 1444555555555543 344555555
Q ss_pred CCCCCCCEEEeeCCCCC-CCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcE
Q 014575 139 FRLEFLKELDLWGCSKL-KTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNF 216 (422)
Q Consensus 139 ~~l~~L~~L~Ls~~~~l-~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 216 (422)
+.++-|+.|||++|+.. ..+| .|-.|+.|+.|+|+.|.++-+|+.++.+++|+.|.+.. +.+-++|..++.++.|+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHH
Confidence 55555555555555433 2334 24445555555555555555555555555555555555 334455555555555555
Q ss_pred EEccCCCCCCCCCcccC
Q 014575 217 IYLRWCSSLKSLPDELG 233 (422)
Q Consensus 217 L~Ls~c~~l~~lp~~~~ 233 (422)
|.+.| +.+..+|..++
T Consensus 178 lhiqg-nrl~vlppel~ 193 (264)
T KOG0617|consen 178 LHIQG-NRLTVLPPELA 193 (264)
T ss_pred Hhccc-ceeeecChhhh
Confidence 55555 34445554443
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=3.4e-17 Score=139.31 Aligned_cols=161 Identities=22% Similarity=0.277 Sum_probs=133.7
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEec
Q 014575 47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNL 125 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L 125 (422)
..+..|.++.|.+..+|+.+ .+.+|+.|++++|.|++++..+..+++|+.+....+.+ ...|.-|+.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl---~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL---NILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh---hcCccccCCCchhhhhhc
Confidence 67778888889999898888 88899999999999999999999999998883332222 223334888899999999
Q ss_pred cCCCCC-ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcc
Q 014575 126 NNCKSL-RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSL 204 (422)
Q Consensus 126 ~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~l 204 (422)
+.|+.. ..+|..++.++.|+.|.|++|..--..|+++++++|+.|.+..|.+-++|..++.++.|++|.+.+ +.+..+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg-nrl~vl 188 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVL 188 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc-ceeeec
Confidence 987654 468999999999999999998765555689999999999999999999999999999999999999 567888
Q ss_pred cccccCC
Q 014575 205 PSSLCKL 211 (422)
Q Consensus 205 p~~l~~l 211 (422)
|..++.+
T Consensus 189 ppel~~l 195 (264)
T KOG0617|consen 189 PPELANL 195 (264)
T ss_pred Chhhhhh
Confidence 8876654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=1.5e-14 Score=153.29 Aligned_cols=178 Identities=22% Similarity=0.291 Sum_probs=117.5
Q ss_pred CeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccC
Q 014575 48 EVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNN 127 (422)
Q Consensus 48 ~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~ 127 (422)
+|+.|++.+|.++.+|. .+++|+.|++++|+|+.++.... +|+.|....+.+... |. ...+|+.|+|++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~Ls~N~L~~L---P~---lp~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSL---PT---LPSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCccccccc--cccccceeECCCCccccCCCCcc---cccccccccCccccc---cc---cccccceEecCC
Confidence 44555555555555554 23566777777776666544222 233332222222111 11 114688888888
Q ss_pred CCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccccc
Q 014575 128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSS 207 (422)
Q Consensus 128 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 207 (422)
|+ +..+|.. ..+|+.|++++|. +..+|.+. ++|+.|+|++|.|+.+|... ++|+.|++++|. +..+|..
T Consensus 352 N~-Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l~--~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~-LssIP~l 420 (788)
T PRK15387 352 NQ-LASLPTL---PSELYKLWAYNNR-LTSLPALP--SGLKELIVSGNRLTSLPVLP---SELKELMVSGNR-LTSLPML 420 (788)
T ss_pred Cc-cCCCCCC---Ccccceehhhccc-cccCcccc--cccceEEecCCcccCCCCcc---cCCCEEEccCCc-CCCCCcc
Confidence 74 4566652 3567788888876 44577543 47899999999999888643 578999999964 6678864
Q ss_pred ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 208 LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 208 l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
..+|+.|++++| .+..+|..+.++++|+.|++++|.++..
T Consensus 421 ---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 421 ---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence 356788999885 4668999999999999999999998743
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=6.8e-14 Score=148.88 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=138.0
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHH
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI 97 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l 97 (422)
.+...|+++++++. .+|..+. .+|+.|++++|.++++|..+. .+|++|++++|+++.++..+. .+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-------sLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-------TIPACIP-EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-------cCCcccc-cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEE
Confidence 35677777775532 2343222 678888888888888887663 578888888888887765432 245554
Q ss_pred HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCcc
Q 014575 98 ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTA 176 (422)
Q Consensus 98 ~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~ 176 (422)
....+.+... |..+ .++|+.|++++|+ +..+|..+. ++|+.|++++|.. ..+| .+. ++|+.|++++|.
T Consensus 247 ~Ls~N~L~~L---P~~l--~s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 247 ELSINRITEL---PERL--PSALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred ECcCCccCcC---ChhH--hCCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCc
Confidence 3333333221 1112 2468888998764 556777653 5788999988764 4455 343 378888888888
Q ss_pred CcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 177 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
++.+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|+ +..+|..+. ++|+.|++++|.++.+|.
T Consensus 316 Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 316 LTALPETLP--PGLKTLEAGENA-LTSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNALTNLPE 384 (754)
T ss_pred cccCCcccc--ccceeccccCCc-cccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCcCCCCCH
Confidence 888876553 578888888864 556777653 688888888864 456776553 578888888888887775
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=2.6e-14 Score=151.97 Aligned_cols=206 Identities=19% Similarity=0.259 Sum_probs=142.3
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHH
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI 97 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l 97 (422)
++|+.|++++|.+. .+|..+. .+|++|++++|.++++|..+ +.+|+.|+|++|++..++..+. .+|+.|
T Consensus 199 ~~L~~L~Ls~N~Lt-------sLP~~l~-~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELK-------SLPENLQ-GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCCCCC-------cCChhhc-cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 36899999988643 2454332 68999999999999888766 3578999999999888765543 345555
Q ss_pred HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCcc
Q 014575 98 ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTA 176 (422)
Q Consensus 98 ~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~ 176 (422)
....+.+.. .|.-+ .++|+.|++++|+ +..+|..+. ++|+.|++++|... .+|. +. ++|+.|++++|.
T Consensus 268 ~Ls~N~L~~---LP~~l--~~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~ 336 (754)
T PRK15370 268 DLFHNKISC---LPENL--PEELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENA 336 (754)
T ss_pred ECcCCccCc---ccccc--CCCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCc
Confidence 332222221 11111 2478999999884 556776442 57888888887644 4553 43 478888888888
Q ss_pred CcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 177 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
++.+|..+. ++|+.|++++|+ +..+|..+ .++|+.|+|++|+ +..+|..+. .+|+.|++++|+++.+|.
T Consensus 337 Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 337 LTSLPASLP--PELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNLVRLPE 405 (754)
T ss_pred cccCChhhc--CcccEEECCCCC-CCcCChhh--cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCcccCch
Confidence 888887663 688888888864 55677765 3678888888864 556776654 367888888888877664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.8e-13 Score=145.11 Aligned_cols=197 Identities=23% Similarity=0.256 Sum_probs=115.4
Q ss_pred CCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHH
Q 014575 19 KLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQII 98 (422)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~ 98 (422)
+|+.|.+.+|.+. .+|..+ ++|++|++++|.++++|.. +++|+.|++++|.|..++.... +|+.|.
T Consensus 223 ~L~~L~L~~N~Lt-------~LP~lp--~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~---~L~~L~ 288 (788)
T PRK15387 223 HITTLVIPDNNLT-------SLPALP--PELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPS---GLCKLW 288 (788)
T ss_pred CCCEEEccCCcCC-------CCCCCC--CCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchh---hcCEEE
Confidence 5666666666532 133211 5677777777777776642 3566777777776666544222 222221
Q ss_pred HhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCc
Q 014575 99 SRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 178 (422)
Q Consensus 99 ~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~ 178 (422)
...+.+.. .+. .+++|+.|+|++|. +..+|.. ..+|+.|++++|. +..+|.+. .+|+.|+|++|+|+
T Consensus 289 Ls~N~Lt~---LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~lp--~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 289 IFGNQLTS---LPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTLP--SGLQELSVSDNQLA 355 (788)
T ss_pred CcCCcccc---ccc---cccccceeECCCCc-cccCCCC---cccccccccccCc-cccccccc--cccceEecCCCccC
Confidence 11111111 111 23567888888774 4445542 2356667777765 34455443 37888888888888
Q ss_pred ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 179 ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 179 ~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
.+|.. ..+|+.|++++| .+..+|.. .++|+.|++++|. +..+|..+ ++|+.|++++|.++.+|.
T Consensus 356 ~LP~l---p~~L~~L~Ls~N-~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l~---s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 356 SLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGNR-LTSLPVLP---SELKELMVSGNRLTSLPM 419 (788)
T ss_pred CCCCC---Ccccceehhhcc-ccccCccc---ccccceEEecCCc-ccCCCCcc---cCCCEEEccCCcCCCCCc
Confidence 77753 245677777774 45567753 3567788887754 44566543 467778888888877775
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=1.9e-15 Score=156.74 Aligned_cols=223 Identities=20% Similarity=0.234 Sum_probs=168.6
Q ss_pred hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccccccccc
Q 014575 12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVE 89 (422)
Q Consensus 12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~ 89 (422)
+-...+.+|+.|++.+|.+ ..+|..+.. .+|++|....|.++.+|... ..+.|+.|+|..|+|..+++.+.
T Consensus 258 ~wi~~~~nle~l~~n~N~l-------~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRL-------VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred HHHHhcccceEecccchhH-------HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHH
Confidence 4445566777777777664 236666666 89999999999999999987 58999999999999999887432
Q ss_pred CC--cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC--CCCCC
Q 014575 90 HN--GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAG 165 (422)
Q Consensus 90 ~l--~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~--~~~l~ 165 (422)
.- ..|..+......+....... -..++.|+.|.+.+|......-..+-+++.|+.|+|++|. +..||. +.++.
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~--e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle 407 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYE--ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLE 407 (1081)
T ss_pred hhhhHHHHHHhhhhcccccccccc--chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchH
Confidence 21 12333333333333222111 1245668999999987776655557799999999999975 778883 88899
Q ss_pred CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEecc
Q 014575 166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAE 244 (422)
Q Consensus 166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~ 244 (422)
.|+.|+|+||.++.+|..+..+..|++|...+ +.+..+| .+..++.|+.+|++.|+... .+|..... ++|++||++
T Consensus 408 ~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred HhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeecc
Confidence 99999999999999999999999999999998 5788899 58899999999999765433 34444433 789999999
Q ss_pred Ccc
Q 014575 245 GTA 247 (422)
Q Consensus 245 ~n~ 247 (422)
||.
T Consensus 485 GN~ 487 (1081)
T KOG0618|consen 485 GNT 487 (1081)
T ss_pred CCc
Confidence 996
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-14 Score=151.07 Aligned_cols=198 Identities=23% Similarity=0.300 Sum_probs=142.2
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEec
Q 014575 47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNL 125 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L 125 (422)
.+|.+++++.+.+..+|... .+.+|+.|+..+|++..++..+....+|+.+....+++...... ...++.|+.|+|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~---le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF---LEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc---ccccceeeeeee
Confidence 55666666666666666333 55666666666666666666666666666664444433333222 456788999999
Q ss_pred cCCCCCccccccCC--------------------------CCCCCCEEEeeCCCCC-CCCcCCCCCCCcCEEEeeCccCc
Q 014575 126 NNCKSLRILPAGIF--------------------------RLEFLKELDLWGCSKL-KTLPEISSAGNIEVMYLNGTAIE 178 (422)
Q Consensus 126 ~~~~~l~~lp~~i~--------------------------~l~~L~~L~Ls~~~~l-~~~p~~~~l~~L~~L~L~~n~i~ 178 (422)
..| .+..+|..+. .++.|+.|.+.+|... ..+|.+.++.+|+.|+|++|++.
T Consensus 318 ~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 887 4555554221 1233555566665544 34567888899999999999999
Q ss_pred ccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 179 ELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 179 ~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
++|.+ +.++..|+.|+|+| +.+..+|..+..+..|+.|...+ +.+..+| .+..++.|+.+|++.|.++++
T Consensus 397 ~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhh
Confidence 99975 68899999999999 56899999999999999999877 5677889 678899999999999998753
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=1.3e-13 Score=136.68 Aligned_cols=194 Identities=24% Similarity=0.321 Sum_probs=163.5
Q ss_pred EEEecCCCCCCCCCCC---CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccC
Q 014575 51 YLHWYGYPLKSLPSNI---HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNN 127 (422)
Q Consensus 51 ~L~l~~~~l~~lP~~~---~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~ 127 (422)
.|.+++-.++.+|..- .+..-+..|++.|++..++.....+..|..+..+.+.+-....+ +.++..|.+|+|+.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~---i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA---ICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh---hhhhhHHHHhhhcc
Confidence 3556666677777543 56667888999999999999888888888887666655444443 78899999999999
Q ss_pred CCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575 128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS 206 (422)
Q Consensus 128 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 206 (422)
| .+..+|..++.++ |+.|.+++|. ++.+| +++.+..|..|+.+.|.|..+|+.++.+.+|+.|.+.. +.+..+|.
T Consensus 131 N-qlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~ 206 (722)
T KOG0532|consen 131 N-QLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPE 206 (722)
T ss_pred c-hhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCH
Confidence 7 5678888898886 9999999975 66666 79988999999999999999999999999999999999 56888999
Q ss_pred cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
.+..| .|..||+++ +++..+|-.|.+|+.|++|-|++|.++..|.
T Consensus 207 El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HHhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 88855 589999985 7889999999999999999999999998875
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=4.8e-13 Score=129.77 Aligned_cols=239 Identities=18% Similarity=0.133 Sum_probs=129.1
Q ss_pred hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-------CC-CCCCceEEEccCCcc
Q 014575 11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-------NI-HPEKLVSIEMPHGNI 81 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-------~~-~~~~L~~L~L~~~~l 81 (422)
...|..+.+|+.|.++++.+.... ...++..+.. ++|++|.+.++.+...|. .+ .+++|+.|+++++.+
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 356778888999999987643211 1123444444 778999998887663222 23 567899999998888
Q ss_pred cccc-ccccCC---cchHHHHHhhccCCCCC--CcchhhhcC-CCCcEEeccCCCCCc----cccccCCCCCCCCEEEee
Q 014575 82 QQLW-DDVEHN---GKLKQIISRACNFFTKS--PNHSLTLHL-DKLVNLNLNNCKSLR----ILPAGIFRLEFLKELDLW 150 (422)
Q Consensus 82 ~~l~-~~~~~l---~~L~~l~~~~~~~~~~~--~~~~li~~l-~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls 150 (422)
.... ..+..+ ++|+.+....+.+.+.. .....+..+ ++|+.|++++|...+ .++..+..+++|++|+++
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 6421 111111 22444422222221100 001113344 667777777765442 233334455667777777
Q ss_pred CCCCCCC----Cc-CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCCccccccc-----CCCCCc
Q 014575 151 GCSKLKT----LP-EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLKSLPSSLC-----KLNSLN 215 (422)
Q Consensus 151 ~~~~l~~----~p-~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-----~l~~L~ 215 (422)
+|..... ++ .+..+++|+.|+|++|.++ .++..+..+++|+.|++++|.....-...+. ..+.|+
T Consensus 174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~ 253 (319)
T cd00116 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253 (319)
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCce
Confidence 7654421 11 2344456777777777665 2334455666777777777654321111111 135677
Q ss_pred EEEccCCCCC----CCCCcccCCCCCCCEEeccCcccccc
Q 014575 216 FIYLRWCSSL----KSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 216 ~L~Ls~c~~l----~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
.|++++|... ..+.+.+..+++|+.+++++|.+..-
T Consensus 254 ~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 254 TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred EEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 7777776543 22334444556677777777766543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.7e-12 Score=123.81 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=67.7
Q ss_pred CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccccc-ccccCCcchHHHHHhh-ccCCCCCC-------------
Q 014575 47 AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQLW-DDVEHNGKLKQIISRA-CNFFTKSP------------- 109 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~l~~~~-~~~~~~~~------------- 109 (422)
.+-..|.++.|.++++|+.. .+++|+.|||++|.|+.+- ..++.+.+|..+..+. +++.+...
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 66788999999999999875 8899999999999998764 3566777776664444 33322211
Q ss_pred ---------cchhhhcCCCCcEEeccCCCCCccccc-cCCCCCCCCEEEeeCC
Q 014575 110 ---------NHSLTLHLDKLVNLNLNNCKSLRILPA-GIFRLEFLKELDLWGC 152 (422)
Q Consensus 110 ---------~~~li~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~ 152 (422)
....+..+++|..|.+.+|. ...++. ++..+.+++++.+..|
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence 11115566666666666653 334443 4555666666655544
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=5.9e-13 Score=129.18 Aligned_cols=236 Identities=17% Similarity=0.098 Sum_probs=148.8
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCC-CCCCC-CC---CCceEEEccCCcccc---
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKS-LPSNI-HP---EKLVSIEMPHGNIQQ--- 83 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~-lP~~~-~~---~~L~~L~L~~~~l~~--- 83 (422)
.+...++|+.|+++++...........++..+.. .+|++|+++++++.. .+..+ .+ ++|++|++++|++..
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 3456667888888776532100000112223333 688888888887763 22222 22 348888888887762
Q ss_pred --ccccccCC-cchHHHHHhhccCCCCC--CcchhhhcCCCCcEEeccCCCCCc----cccccCCCCCCCCEEEeeCCCC
Q 014575 84 --LWDDVEHN-GKLKQIISRACNFFTKS--PNHSLTLHLDKLVNLNLNNCKSLR----ILPAGIFRLEFLKELDLWGCSK 154 (422)
Q Consensus 84 --l~~~~~~l-~~L~~l~~~~~~~~~~~--~~~~li~~l~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~ 154 (422)
+...+..+ ++|+.+....+.+.... .....+..+++|++|++++|...+ .++..+..+++|+.|++++|..
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 22233444 56666644444433211 223336677899999999987653 3444455678999999999975
Q ss_pred CCCC----c-CCCCCCCcCEEEeeCccCccc-Cccc-c----CCCCCCEEecCCCCCC----CcccccccCCCCCcEEEc
Q 014575 155 LKTL----P-EISSAGNIEVMYLNGTAIEEL-PSSI-E----CLSRLSALYLDNCKRL----KSLPSSLCKLNSLNFIYL 219 (422)
Q Consensus 155 l~~~----p-~~~~l~~L~~L~L~~n~i~~l-p~~i-~----~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~L 219 (422)
.... + .+..+++|+.|++++|.++.. +..+ . ..+.|+.|++++|... ..+...+..+++|+.+++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 4322 2 366788999999999998841 1111 1 2479999999998654 244555667789999999
Q ss_pred cCCCCCCC----CCcccCCC-CCCCEEeccCccc
Q 014575 220 RWCSSLKS----LPDELGNL-EALDSLIAEGTAI 248 (422)
Q Consensus 220 s~c~~l~~----lp~~~~~l-~~L~~L~l~~n~l 248 (422)
++|..... +...+... +.|+++++.++++
T Consensus 286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99876643 44344444 6788888887753
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=2e-12 Score=123.28 Aligned_cols=85 Identities=26% Similarity=0.243 Sum_probs=70.6
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCccc-CccccCCCCC
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEEL-PSSIECLSRL 190 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L 190 (422)
|..|++|+.|+|++|+....-+..|..+..++.|.|..|+ +..+. .|.++..|+.|+|++|+|+.+ |.+|..+..|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 8889999999999998888888888889999999999975 44444 478888899999999999865 6678888889
Q ss_pred CEEecCCCC
Q 014575 191 SALYLDNCK 199 (422)
Q Consensus 191 ~~L~L~~~~ 199 (422)
.+|+|-.|.
T Consensus 349 ~~l~l~~Np 357 (498)
T KOG4237|consen 349 STLNLLSNP 357 (498)
T ss_pred eeeehccCc
Confidence 999888754
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.2e-10 Score=116.75 Aligned_cols=176 Identities=28% Similarity=0.373 Sum_probs=118.7
Q ss_pred CCeeEEEecCCCCCCCCCCCCCC--CceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEe
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPE--KLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN 124 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~--~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~ 124 (422)
+.++.|++.++++..+|...... +|++|++++|.+..++.. ++.++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~--------------------------~~~l~~L~~L~ 169 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP--------------------------LRNLPNLKNLD 169 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh--------------------------hhccccccccc
Confidence 34555555555555555544222 555555555555554311 56777788888
Q ss_pred ccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCc
Q 014575 125 LNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKS 203 (422)
Q Consensus 125 L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~ 203 (422)
+++| .+..+|.....++.|+.|++++|. +..+|. +..+..|++|.+++|.+..++..+..+.++..|.+.+ +.+..
T Consensus 170 l~~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~ 246 (394)
T COG4886 170 LSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLED 246 (394)
T ss_pred cCCc-hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeee
Confidence 8887 455666655578888888888865 455553 4455568888888887777777788888888888776 44555
Q ss_pred ccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 204 LPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 204 lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
+|..++.+++|+.|++++| .+..++. ++.+.+|+.|+++++.+...+.
T Consensus 247 ~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 247 LPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccchhccccccceeccccc-ccccccc-ccccCccCEEeccCccccccch
Confidence 5777778888888888874 4555555 7777888888888887776654
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=4.2e-11 Score=110.71 Aligned_cols=137 Identities=19% Similarity=0.219 Sum_probs=112.3
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEE
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSAL 193 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L 193 (422)
+...+.|+.|||++| .+..+..++.-++.++.|++|+|.. ..+..+..+++|+.|||++|.++++-.+-..+.+.++|
T Consensus 280 ~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i-~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRI-RTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccce-eeehhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 556678999999997 5667777776789999999999874 44555888899999999999999888777788899999
Q ss_pred ecCCCCCCCcccccccCCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEeccCccccccccc
Q 014575 194 YLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAEGTAIREVYFF 254 (422)
Q Consensus 194 ~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~~n~l~~lp~f 254 (422)
.|++| .+..+.. ++++-+|..||+++|+.-. .-...+++++.|+.+.|.+|.+..+|+.
T Consensus 358 ~La~N-~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 358 KLAQN-KIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred ehhhh-hHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 99994 5666654 7888899999999975432 1234689999999999999999988874
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.4e-10 Score=112.73 Aligned_cols=186 Identities=27% Similarity=0.323 Sum_probs=150.8
Q ss_pred hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-C-CeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccccccc
Q 014575 11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-A-EVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDD 87 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~-~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~ 87 (422)
.......++++.|.+.+|.. ..++..... . +|+.|++++|.+..+|... .+++|+.|++++|++..++..
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i-------~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNI-------TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred chhhhcccceeEEecCCccc-------ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh
Confidence 34455667889999988763 235555555 4 8999999999999998555 899999999999999988654
Q ss_pred ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCc
Q 014575 88 VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNI 167 (422)
Q Consensus 88 ~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L 167 (422)
. +.++.|+.|++++| .+..+|..+..+..|++|.+++|.....+..+..+.++
T Consensus 182 ~--------------------------~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l 234 (394)
T COG4886 182 L--------------------------SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNL 234 (394)
T ss_pred h--------------------------hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccc
Confidence 2 25667889999997 57788876656677999999998766666678888899
Q ss_pred CEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCccc
Q 014575 168 EVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDEL 232 (422)
Q Consensus 168 ~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~ 232 (422)
..|.+.+|.+..++..++.++.|++|++++ +.+..++. ++.+.+|+.|+++++.....+|...
T Consensus 235 ~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 235 SGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cccccCCceeeeccchhccccccceecccc-cccccccc-ccccCccCEEeccCccccccchhhh
Confidence 999999999999999999999999999999 45677776 8899999999999987777666554
No 27
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=2.8e-09 Score=112.74 Aligned_cols=106 Identities=26% Similarity=0.315 Sum_probs=90.2
Q ss_pred CCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEcc
Q 014575 143 FLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR 220 (422)
Q Consensus 143 ~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 220 (422)
.++.|+|++|...+.+| .++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+..+.+|+.++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788999988877787 5888889999999999987 788889999999999999988888999999999999999999
Q ss_pred CCCCCCCCCcccCCC-CCCCEEeccCccc
Q 014575 221 WCSSLKSLPDELGNL-EALDSLIAEGTAI 248 (422)
Q Consensus 221 ~c~~l~~lp~~~~~l-~~L~~L~l~~n~l 248 (422)
+|+..+.+|..++.+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 998888999887653 4567788888753
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=1.7e-09 Score=95.19 Aligned_cols=123 Identities=23% Similarity=0.288 Sum_probs=43.1
Q ss_pred hcCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccc-cCCCCCCE
Q 014575 115 LHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI-ECLSRLSA 192 (422)
Q Consensus 115 ~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~ 192 (422)
.+..+++.|+|.+|.. ..+. .+. .+.+|+.|++++|. ++.++.+..++.|++|++++|.|+.++..+ ..+++|+.
T Consensus 16 ~n~~~~~~L~L~~n~I-~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI-STIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-cccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3455678888888743 3333 254 57788888888875 556677777888888888888888887655 46788888
Q ss_pred EecCCCCCCCccc--ccccCCCCCcEEEccCCCCCCCCCc----ccCCCCCCCEEe
Q 014575 193 LYLDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSLKSLPD----ELGNLEALDSLI 242 (422)
Q Consensus 193 L~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l~~lp~----~~~~l~~L~~L~ 242 (422)
|++++|+ +..+- ..+..+++|+.|++.+|+.... +. .+..+++|+.||
T Consensus 93 L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred EECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 8888854 33222 2355677777788777665432 22 234566777665
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.85 E-value=4.7e-09 Score=111.04 Aligned_cols=84 Identities=26% Similarity=0.400 Sum_probs=72.0
Q ss_pred CcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575 166 NIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE 244 (422)
Q Consensus 166 ~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~ 244 (422)
.++.|+|++|.++ .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|+..+.+|+.++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778888888887 778888888888888888888778888888888888888888888888888888888888888888
Q ss_pred Ccccc
Q 014575 245 GTAIR 249 (422)
Q Consensus 245 ~n~l~ 249 (422)
+|.++
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 88876
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.1e-10 Score=114.14 Aligned_cols=179 Identities=18% Similarity=0.206 Sum_probs=141.4
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEec
Q 014575 47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNL 125 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L 125 (422)
..-...+++.|.+..+|..+ .+..|+.+.+.+|.|..+++.+..+..|..+....+.+..+... +-.|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~---lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG---LCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh---hhcCc-ceeEEE
Confidence 55567788889999999888 56778888899999999988888888888875554444333222 33343 888888
Q ss_pred cCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc
Q 014575 126 NNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP 205 (422)
Q Consensus 126 ~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 205 (422)
++| +++.+|..|+.+..|..||.+.|......+.++++.+|+.|.+..|++..+|..+..| .|..||++. +.+..||
T Consensus 151 sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iP 227 (722)
T KOG0532|consen 151 SNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLP 227 (722)
T ss_pred ecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecc
Confidence 886 6889999898889999999999875555557899999999999999999999888754 588999997 5688899
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCcccC
Q 014575 206 SSLCKLNSLNFIYLRWCSSLKSLPDELG 233 (422)
Q Consensus 206 ~~l~~l~~L~~L~Ls~c~~l~~lp~~~~ 233 (422)
..|.+|+.|++|-|.+ +-+.+=|..+.
T Consensus 228 v~fr~m~~Lq~l~Len-NPLqSPPAqIC 254 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLEN-NPLQSPPAQIC 254 (722)
T ss_pred hhhhhhhhheeeeecc-CCCCCChHHHH
Confidence 9999999999999986 55676666654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=7.2e-09 Score=91.26 Aligned_cols=119 Identities=27% Similarity=0.363 Sum_probs=44.8
Q ss_pred CCccccccCCCCCCCCEEEeeCCCCCCCCcCCC-CCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccc
Q 014575 130 SLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS-SAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSL 208 (422)
Q Consensus 130 ~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~-~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 208 (422)
.+...|. +.+..+++.|+|.+|. +..+..++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..+++.+
T Consensus 8 ~i~~~~~-~~n~~~~~~L~L~~n~-I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l 83 (175)
T PF14580_consen 8 MIEQIAQ-YNNPVKLRELNLRGNQ-ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGL 83 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHH
T ss_pred ccccccc-cccccccccccccccc-cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccch
Confidence 3445555 4477789999999986 44456666 5789999999999999987 5778999999999995 566676545
Q ss_pred -cCCCCCcEEEccCCCCCCCCC--cccCCCCCCCEEeccCcccccccc
Q 014575 209 -CKLNSLNFIYLRWCSSLKSLP--DELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 209 -~~l~~L~~L~Ls~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
..+++|+.|++++|+. ..+- ..+..+++|+.|++.+|++...+.
T Consensus 84 ~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred HHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 3689999999998654 3332 345678999999999999987665
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.9e-10 Score=107.02 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=93.3
Q ss_pred CCeeEEEecCCCCCCCCC--CC-CCCCceEEEccCCccccc---cccccCCcchHHHHHhhccC--CCCCCcchhhhcCC
Q 014575 47 AEVRYLHWYGYPLKSLPS--NI-HPEKLVSIEMPHGNIQQL---WDDVEHNGKLKQIISRACNF--FTKSPNHSLTLHLD 118 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~--~~-~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~l~~~~~~~--~~~~~~~~li~~l~ 118 (422)
.+||...++++++...+. .. .+++++.|||++|-+... ..-..++++|+.|....+.+ +..+.. -..++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLS 197 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhhhh
Confidence 455555555555555443 11 455555555555544331 11224455555542222111 111111 12455
Q ss_pred CCcEEeccCCCCCc-cccccCCCCCCCCEEEeeCCCCCCCC-cCCCCCCCcCEEEeeCccCcccC--ccccCCCCCCEEe
Q 014575 119 KLVNLNLNNCKSLR-ILPAGIFRLEFLKELDLWGCSKLKTL-PEISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALY 194 (422)
Q Consensus 119 ~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~l~~~-p~~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~ 194 (422)
.|+.|.|++|...- .+-..+..+++|+.|+|.+|...... -+..-+..|+.|+|++|++-.++ ..++.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 56666666665431 11122234566666666666322111 12223346666666666666555 4456666666666
Q ss_pred cCCCCCCC-ccccc-----ccCCCCCcEEEccCCCCCCCCC--cccCCCCCCCEEeccCcccc
Q 014575 195 LDNCKRLK-SLPSS-----LCKLNSLNFIYLRWCSSLKSLP--DELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 195 L~~~~~l~-~lp~~-----l~~l~~L~~L~Ls~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~ 249 (422)
++.|.... .+|+. ...+++|++|++..|+.. ..+ ..+..+++|+.|.+.+|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 66643221 12221 234566666666665431 111 12334455555555555543
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=2.6e-09 Score=115.95 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=46.7
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLW 85 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~ 85 (422)
.++.+.|..|+.|++|++++|.-. ..+|..++. -+||||++++..++.+|..+ +++.|.+|++.++.-....
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l------~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSL------SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCcc------CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence 345555666666666666654311 236666665 66666666666666666666 6666666666655433322
Q ss_pred ccc-cCCcchHHH
Q 014575 86 DDV-EHNGKLKQI 97 (422)
Q Consensus 86 ~~~-~~l~~L~~l 97 (422)
.++ ..+.+|+++
T Consensus 635 ~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 635 PGILLELQSLRVL 647 (889)
T ss_pred cchhhhcccccEE
Confidence 222 225555555
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.8e-09 Score=102.36 Aligned_cols=200 Identities=17% Similarity=0.188 Sum_probs=135.2
Q ss_pred hCCCCCceEEEecCCCCCCCceeEEccC---CCCC-CCeeEEEecCCCCCCCCC---CC-CCCCceEEEccCCccccccc
Q 014575 15 TKMCKLRFLKFYNSKDDGENKCKVSYLV---GPGF-AEVRYLHWYGYPLKSLPS---NI-HPEKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 15 ~~m~~L~~L~l~~~~~~~~~~~~~~lp~---~l~~-~~Lr~L~l~~~~l~~lP~---~~-~~~~L~~L~L~~~~l~~l~~ 86 (422)
+++++||...|.+.. +..+. ..+. +++|.|++++|-+...-. .. ++++|+.|+|+.|++.-.|.
T Consensus 118 sn~kkL~~IsLdn~~--------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR--------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred hhHHhhhheeecCcc--------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 466788888888754 32332 2222 899999999986554322 11 67899999999999987776
Q ss_pred cc--cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCC--cCCC
Q 014575 87 DV--EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTL--PEIS 162 (422)
Q Consensus 87 ~~--~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--p~~~ 162 (422)
.. ..+..||.|....+.+.. -........++.|+.|+|+.|.....--.+...+..|+.|||++|+..... +..+
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred ccchhhhhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 43 345666666544444431 122333667889999999998644433333446888999999998765433 4678
Q ss_pred CCCCcCEEEeeCccCccc--Ccc-----ccCCCCCCEEecCCCCCCCcccc--cccCCCCCcEEEccCCCC
Q 014575 163 SAGNIEVMYLNGTAIEEL--PSS-----IECLSRLSALYLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSS 224 (422)
Q Consensus 163 ~l~~L~~L~L~~n~i~~l--p~~-----i~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~ 224 (422)
.++.|+.|+++.|+|+++ |+. ...+++|++|++..|+ +...+. .+..+.+|+.|.+..+..
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccccc
Confidence 899999999999999844 543 3567899999999965 433332 355667777777665443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=6.5e-09 Score=96.38 Aligned_cols=127 Identities=24% Similarity=0.240 Sum_probs=91.6
Q ss_pred CCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEE
Q 014575 69 EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELD 148 (422)
Q Consensus 69 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 148 (422)
+.|+++||++|.|+.+.+++ .-+++++.|+++.|... .+.+ +..+++|+.||
T Consensus 284 q~LtelDLS~N~I~~iDESv--------------------------KL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LD 335 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESV--------------------------KLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLD 335 (490)
T ss_pred hhhhhccccccchhhhhhhh--------------------------hhccceeEEecccccee-eehh-hhhcccceEee
Confidence 46899999999999887664 34567788888887544 3333 77888888899
Q ss_pred eeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc--ccccCCCCCcEEEccCCCCC
Q 014575 149 LWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSL 225 (422)
Q Consensus 149 Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l 225 (422)
||+|. +..+.. -.++.|+++|.|++|.|+.+. .++.+-+|..|++++|+ +..+- ..|++++.|+.+.|.+|+..
T Consensus 336 LS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 336 LSGNL-LAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccch-hHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 98875 333332 235668888888888888775 46777888888888854 33332 34788888888888886554
Q ss_pred C
Q 014575 226 K 226 (422)
Q Consensus 226 ~ 226 (422)
+
T Consensus 413 ~ 413 (490)
T KOG1259|consen 413 G 413 (490)
T ss_pred c
Confidence 3
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=6.4e-08 Score=105.20 Aligned_cols=80 Identities=38% Similarity=0.524 Sum_probs=39.5
Q ss_pred CCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEc
Q 014575 141 LEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYL 219 (422)
Q Consensus 141 l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 219 (422)
++.|+.|||++|..+..+| .|+++-+|++|+|+++.|+.+|..+++|..|.+|++..+..+..+|.....+++|++|.+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 4444444444444444444 244444555555555555555555555555555555554444444444444555555554
Q ss_pred c
Q 014575 220 R 220 (422)
Q Consensus 220 s 220 (422)
.
T Consensus 650 ~ 650 (889)
T KOG4658|consen 650 P 650 (889)
T ss_pred e
Confidence 3
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.52 E-value=2.9e-07 Score=90.83 Aligned_cols=118 Identities=28% Similarity=0.454 Sum_probs=70.6
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCc-cCcccCccccCCCCCC
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGT-AIEELPSSIECLSRLS 191 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n-~i~~lp~~i~~l~~L~ 191 (422)
+..+.+++.|++++| .+..+|. -..+|+.|.+++|..+..+|+ +. ++|+.|++++| .+..+|.+ |+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cc
Confidence 334566777777777 5666662 234677777777777777774 43 37777777776 66666654 44
Q ss_pred EEecCC--CCCCCcccccccCC------------------CCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCc
Q 014575 192 ALYLDN--CKRLKSLPSSLCKL------------------NSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGT 246 (422)
Q Consensus 192 ~L~L~~--~~~l~~lp~~l~~l------------------~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n 246 (422)
.|++.+ +..++.+|.++..| ++|+.|++++|... .+|..+. .+|+.|.++.+
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 444443 22345555544322 36777777776644 2443333 46777777655
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=4.7e-07 Score=89.36 Aligned_cols=131 Identities=21% Similarity=0.310 Sum_probs=78.8
Q ss_pred CCeeEEEecCCCCCCCCCCCCCC-CceEEEccCC-ccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEe
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPE-KLVSIEMPHG-NIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN 124 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~-~L~~L~L~~~-~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~ 124 (422)
.+++.|++++|.++++| .++ +|++|.++++ +++.++.. + .++|++|+
T Consensus 52 ~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~--------------------------L--P~nLe~L~ 100 (426)
T PRK15386 52 RASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGS--------------------------I--PEGLEKLT 100 (426)
T ss_pred cCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCch--------------------------h--hhhhhheE
Confidence 66778888888777877 475 4777777653 33333211 1 13578888
Q ss_pred ccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCcc-C--cccCccccCCCCCCEEecCCCCCC
Q 014575 125 LNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA-I--EELPSSIECLSRLSALYLDNCKRL 201 (422)
Q Consensus 125 L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~-i--~~lp~~i~~l~~L~~L~L~~~~~l 201 (422)
+++|..+..+|. +|+.|+++++. ...++.+.. +|+.|.+.+++ . ..+|.. -.++|++|++++|...
T Consensus 101 Ls~Cs~L~sLP~------sLe~L~L~~n~-~~~L~~LPs--sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 101 VCHCPEISGLPE------SVRSLEIKGSA-TDSIKNVPN--GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred ccCccccccccc------ccceEEeCCCC-CcccccCcc--hHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 888876766665 35666665432 223333333 67777765432 1 122211 1257999999998755
Q ss_pred CcccccccCCCCCcEEEccCC
Q 014575 202 KSLPSSLCKLNSLNFIYLRWC 222 (422)
Q Consensus 202 ~~lp~~l~~l~~L~~L~Ls~c 222 (422)
.+|..+. .+|+.|+++.|
T Consensus 170 -~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 170 -ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred -cCccccc--ccCcEEEeccc
Confidence 3554432 58999998764
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.45 E-value=1.8e-07 Score=67.58 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=36.1
Q ss_pred CCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCC
Q 014575 165 GNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCS 223 (422)
Q Consensus 165 ~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~ 223 (422)
++|++|++++|.|+.+|. .+..+++|++|++++|+...--|..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356667777777776664 45666667777777654433333456666666666666654
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=3.9e-08 Score=93.04 Aligned_cols=213 Identities=18% Similarity=0.132 Sum_probs=124.0
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCC----CCCCCCCC--------CCCCceEEEccCC
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYP----LKSLPSNI--------HPEKLVSIEMPHG 79 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~----l~~lP~~~--------~~~~L~~L~L~~~ 79 (422)
....|..++.|+|++|.++-.. .-.+...+.. ++||..+|++-- ...+|... ..++|+.|+||.|
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EA--a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEA--ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HhcccCceEEEeccCCchhHHH--HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 5678889999999998754221 0013344555 789999998763 23444422 3458999999999
Q ss_pred ccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcc-------------ccccCCCCCCCCE
Q 014575 80 NIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI-------------LPAGIFRLEFLKE 146 (422)
Q Consensus 80 ~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~-------------lp~~i~~l~~L~~ 146 (422)
-+-. .++.. |. .++..+..|++|.|.+|..-.. ...-+..-+.|++
T Consensus 103 A~G~--~g~~~---l~----------------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 103 AFGP--KGIRG---LE----------------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRV 161 (382)
T ss_pred ccCc--cchHH---HH----------------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEE
Confidence 7742 12211 11 1255566677777776643211 1112334566777
Q ss_pred EEeeCCCCCCCCc------CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCC----cccccccCC
Q 014575 147 LDLWGCSKLKTLP------EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLK----SLPSSLCKL 211 (422)
Q Consensus 147 L~Ls~~~~l~~~p------~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l 211 (422)
+....|. +...+ .+...+.|+.+.+..|.|. -+-..+..+++|+.|+|.+|.... .+-..+..+
T Consensus 162 ~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 162 FICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred EEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 7777754 44444 1445567777777777665 223456677777777777765432 223334556
Q ss_pred CCCcEEEccCCCCCCCCCcc----c-CCCCCCCEEeccCcccc
Q 014575 212 NSLNFIYLRWCSSLKSLPDE----L-GNLEALDSLIAEGTAIR 249 (422)
Q Consensus 212 ~~L~~L~Ls~c~~l~~lp~~----~-~~l~~L~~L~l~~n~l~ 249 (422)
++|+.|++++|.....--.. + ...++|+.|.+.+|.|+
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 67777777777654322111 1 22466777777777665
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=7.6e-07 Score=64.29 Aligned_cols=60 Identities=27% Similarity=0.342 Sum_probs=51.2
Q ss_pred CCCCEEecCCCCCCCccc-ccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccc
Q 014575 188 SRLSALYLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248 (422)
Q Consensus 188 ~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l 248 (422)
++|++|++++| .+..+| ..+.++++|+.|++++|+....-|..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47999999997 566777 4688999999999998777666667889999999999999975
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.18 E-value=1.3e-07 Score=89.52 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=33.5
Q ss_pred hhhhCCCCCceEEEecCCCCCCCceeEEccCCCC----C-CCeeEEEecCCCCCCCCC--------------CC-CCCCc
Q 014575 12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPG----F-AEVRYLHWYGYPLKSLPS--------------NI-HPEKL 71 (422)
Q Consensus 12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~----~-~~Lr~L~l~~~~l~~lP~--------------~~-~~~~L 71 (422)
+|+.+.++|++|+|+.|.++.. .++++. . ..|+.|.+.+|.+...-. .. ..++|
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPK------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred HHHhcCCceeEeeccccccCcc------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 3555556666666666654322 222222 1 566666666665432110 11 34566
Q ss_pred eEEEccCCcccc
Q 014575 72 VSIEMPHGNIQQ 83 (422)
Q Consensus 72 ~~L~L~~~~l~~ 83 (422)
+++....|++..
T Consensus 160 rv~i~~rNrlen 171 (382)
T KOG1909|consen 160 RVFICGRNRLEN 171 (382)
T ss_pred EEEEeecccccc
Confidence 666666666553
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=3.2e-07 Score=92.68 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=21.4
Q ss_pred CcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 214 LNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 214 L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
|+.++++++ ....+++.+..+..+..|++.+|.+..+
T Consensus 234 L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 234 LRELYLSGN-RISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred HHHHhcccC-ccccccccccccccccccchhhcccccc
Confidence 566666663 3333434455566666677666665544
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=7.1e-08 Score=89.53 Aligned_cols=171 Identities=22% Similarity=0.249 Sum_probs=110.7
Q ss_pred CceEEEccCCcccc--ccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc--ccCCCCCCCC
Q 014575 70 KLVSIEMPHGNIQQ--LWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP--AGIFRLEFLK 145 (422)
Q Consensus 70 ~L~~L~L~~~~l~~--l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp--~~i~~l~~L~ 145 (422)
.|+.|||+.+.|+. +..-...+.+||.++.....+.|... +-++.-..|+.|+|+.|....... -.+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~--~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV--NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH--HHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 48888888888763 33334556666666555444433222 226677788888888887665533 2244678888
Q ss_pred EEEeeCCCCCCCCc-----CCCCCCCcCEEEeeCcc----CcccCccccCCCCCCEEecCCCCCCCc-ccccccCCCCCc
Q 014575 146 ELDLWGCSKLKTLP-----EISSAGNIEVMYLNGTA----IEELPSSIECLSRLSALYLDNCKRLKS-LPSSLCKLNSLN 215 (422)
Q Consensus 146 ~L~Ls~~~~l~~~p-----~~~~l~~L~~L~L~~n~----i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~ 215 (422)
.|+++.|......- .++. +|..|+|+|+. .+.+..-...+++|..|||++|..+.. .-..+.+++.|+
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise--~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISE--TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hcCchHhhccchhhhHHHhhhch--hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 88888886554332 2455 78888888863 224444456788888888888766553 223366788888
Q ss_pred EEEccCCCCCCCCCc---ccCCCCCCCEEeccCc
Q 014575 216 FIYLRWCSSLKSLPD---ELGNLEALDSLIAEGT 246 (422)
Q Consensus 216 ~L~Ls~c~~l~~lp~---~~~~l~~L~~L~l~~n 246 (422)
+|.++.|-. .+|+ .+...++|.+|++.|+
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 888888743 3343 2456678888887775
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=5.4e-07 Score=91.07 Aligned_cols=132 Identities=23% Similarity=0.233 Sum_probs=86.0
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCE
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS-IECLSRLSA 192 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~ 192 (422)
+..+++|++|++++|. ++.+.. +..++.|+.|++++|. +..++.+..+++|+.+++++|.++.+... ...+.+|+.
T Consensus 114 l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEE 190 (414)
T ss_pred hhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence 3456778888888874 444443 5677778888888865 66677777788888888888888877664 577888888
Q ss_pred EecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCC--CCCEEeccCccccccc
Q 014575 193 LYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE--ALDSLIAEGTAIREVY 252 (422)
Q Consensus 193 L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~--~L~~L~l~~n~l~~lp 252 (422)
+++.+|.. ..+. .+..+..+..+++..|.....-+ +..+. .|+.+++++|++..++
T Consensus 191 l~l~~n~i-~~i~-~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 191 LDLGGNSI-REIE-GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred HhccCCch-hccc-chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc
Confidence 88888543 2222 23334445555665543322211 11222 3789999999888663
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=1e-07 Score=97.73 Aligned_cols=172 Identities=18% Similarity=0.159 Sum_probs=84.8
Q ss_pred CCCCceEEEccCCccccccccccCC-------------cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcc
Q 014575 67 HPEKLVSIEMPHGNIQQLWDDVEHN-------------GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI 133 (422)
Q Consensus 67 ~~~~L~~L~L~~~~l~~l~~~~~~l-------------~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~ 133 (422)
..+.|+.|.++++.|... .|++.+ ..|+++ ......+....+. ..+|...+.+.| .+..
T Consensus 107 pF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v--~ascggd~~ns~~----Wn~L~~a~fsyN-~L~~ 178 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHV--FASCGGDISNSPV----WNKLATASFSYN-RLVL 178 (1096)
T ss_pred cccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHH--HHHhccccccchh----hhhHhhhhcchh-hHHh
Confidence 667899999998887653 222221 222222 1111122222221 123444444443 3444
Q ss_pred ccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCC
Q 014575 134 LPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLN 212 (422)
Q Consensus 134 lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 212 (422)
+..++.-++.|+.|+|+.|.... ...+..++.|++|||+.|.+..+|.- ...+ +|..|.+++| -++++-. +.+|.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g-ie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG-IENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhh-hHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh-HHhhh
Confidence 44445455666666666654322 22555566666666666666666542 1222 3666666663 3444432 55666
Q ss_pred CCcEEEccCCCCCCCC-CcccCCCCCCCEEeccCccccc
Q 014575 213 SLNFIYLRWCSSLKSL-PDELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 213 ~L~~L~Ls~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~ 250 (422)
+|+.||+++|-..+-- -.-++.+..|+.|+|.||.+--
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6666666664322210 0112344556666666666543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=4.7e-07 Score=93.03 Aligned_cols=168 Identities=24% Similarity=0.272 Sum_probs=107.9
Q ss_pred CCeeEEEecCCCCCCCCCCCCC-CCceEEEccCCcccccc-------ccccC---CcchHHHHHhhccCCCCCCcchhhh
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHP-EKLVSIEMPHGNIQQLW-------DDVEH---NGKLKQIISRACNFFTKSPNHSLTL 115 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~-~~L~~L~L~~~~l~~l~-------~~~~~---l~~L~~l~~~~~~~~~~~~~~~li~ 115 (422)
..||.|.+.++++..+-.-..+ ..|+.| |.++.+..+- .++.+ -.+|+.++...+.+. .....+.
T Consensus 109 ~sLr~LElrg~~L~~~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~---~mD~SLq 184 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLSTAKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV---LMDESLQ 184 (1096)
T ss_pred cceeeEEecCcchhhhhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH---hHHHHHH
Confidence 8999999999998774322111 122322 2333332211 11111 122333322222221 1222256
Q ss_pred cCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCC--CCCCcCEEEeeCccCcccCccccCCCCCCEE
Q 014575 116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS--SAGNIEVMYLNGTAIEELPSSIECLSRLSAL 193 (422)
Q Consensus 116 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~--~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L 193 (422)
-++.|+.|+|++|+....- .+..++.|++|||++|. ++.+|.++ .+ .|+.|.|.+|.++++- .|.+|.+|+.|
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhhh-hHHhhhhhhcc
Confidence 6788999999999766553 57789999999999975 77778543 33 4999999999999886 57899999999
Q ss_pred ecCCCCCCCcccc--cccCCCCCcEEEccCCCC
Q 014575 194 YLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSS 224 (422)
Q Consensus 194 ~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~ 224 (422)
|+++|- +....+ -+..|..|+.|+|.||+.
T Consensus 260 DlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999953 332221 155678899999999754
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6.1e-06 Score=87.80 Aligned_cols=131 Identities=22% Similarity=0.167 Sum_probs=93.4
Q ss_pred CCCCcEEeccCCCCC-ccccccCC-CCCCCCEEEeeCCCCCC-CCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCE
Q 014575 117 LDKLVNLNLNNCKSL-RILPAGIF-RLEFLKELDLWGCSKLK-TLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSA 192 (422)
Q Consensus 117 l~~L~~L~L~~~~~l-~~lp~~i~-~l~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~ 192 (422)
-.+|++|+++|.... ...|..++ -+|+|++|.++|=.... .+- -..++++|..||+++++++.+ ..+++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 357999999996543 23344454 48999999999943221 122 256788999999999999999 78999999999
Q ss_pred EecCCCCCCC-cccccccCCCCCcEEEccCCCCCCCCCcc-------cCCCCCCCEEeccCcccc
Q 014575 193 LYLDNCKRLK-SLPSSLCKLNSLNFIYLRWCSSLKSLPDE-------LGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 193 L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~-------~~~l~~L~~L~l~~n~l~ 249 (422)
|.+.+-.... ..-..+..|++|+.||+|.-... ..+.. -..|++|+.||.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999844332 11123678999999999974332 22211 134789999999998764
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.8e-05 Score=52.97 Aligned_cols=40 Identities=28% Similarity=0.479 Sum_probs=26.6
Q ss_pred CCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc
Q 014575 165 GNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP 205 (422)
Q Consensus 165 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 205 (422)
++|++|++++|+|+++|+.++.+++|+.|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 36777777777777777777777777777777753 44443
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=1.2e-06 Score=72.75 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=44.5
Q ss_pred CCcCEEEeeCccCcccCccccC-CCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575 165 GNIEVMYLNGTAIEELPSSIEC-LSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA 243 (422)
Q Consensus 165 ~~L~~L~L~~n~i~~lp~~i~~-l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l 243 (422)
..|...+|++|.+..+|+.+.. .+-++.|+|++ +.+..+|+.+..++.|+.|+++.| .+...|+.+..+.+|..|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 3444455555555555554432 23455555555 345555555555555555555552 33444555555555555555
Q ss_pred cCccccccc
Q 014575 244 EGTAIREVY 252 (422)
Q Consensus 244 ~~n~l~~lp 252 (422)
.+|.+.++|
T Consensus 131 ~~na~~eid 139 (177)
T KOG4579|consen 131 PENARAEID 139 (177)
T ss_pred CCCccccCc
Confidence 555555444
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=4.4e-05 Score=51.10 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 212 NSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 212 ~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
++|++|++++| .+..+|..+++|++|+.|++++|+++.+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35667777764 344566666777777777777777766654
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=5.2e-06 Score=68.96 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=27.5
Q ss_pred CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCc
Q 014575 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPS 182 (422)
Q Consensus 120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~ 182 (422)
++.|+|++| .+..+|..+.-++.|+.|+++.|......-.+..+.+|-+|+..+|++.++|.
T Consensus 79 ~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 79 ATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred hhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 344444443 23344444444555555555554432222233334444555555555544443
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00055 Score=60.73 Aligned_cols=101 Identities=23% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCC-CCCcCEEEeeCccCcccCc--cccCCCCCCEEe
Q 014575 118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISS-AGNIEVMYLNGTAIEELPS--SIECLSRLSALY 194 (422)
Q Consensus 118 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~-l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~ 194 (422)
.....+||++|. +..++. +..++.|.+|.|..|.+...-|.+.. +++|+.|.|.+|+|.++-. .+..+++|++|.
T Consensus 42 d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345566676653 334433 55677777777777776666665443 3467777777777765532 244566777777
Q ss_pred cCCCCCCCcccc----cccCCCCCcEEEccC
Q 014575 195 LDNCKRLKSLPS----SLCKLNSLNFIYLRW 221 (422)
Q Consensus 195 L~~~~~l~~lp~----~l~~l~~L~~L~Ls~ 221 (422)
+-+|.... -+. -+..+++|+.||+++
T Consensus 120 ll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 77754221 111 156677788887765
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00015 Score=67.87 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=18.8
Q ss_pred ccCCCCCcEEEccCCCCCCCCCc------ccCCCCCCCEEec
Q 014575 208 LCKLNSLNFIYLRWCSSLKSLPD------ELGNLEALDSLIA 243 (422)
Q Consensus 208 l~~l~~L~~L~Ls~c~~l~~lp~------~~~~l~~L~~L~l 243 (422)
+.++++|..|.+++++....+-. .++++++++.|+=
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 44555555555555544433321 2456667776653
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=1.9e-05 Score=73.68 Aligned_cols=134 Identities=20% Similarity=0.162 Sum_probs=92.0
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc---CCCCCCCcCEEEeeCccCc-c-cCccccC-C
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP---EISSAGNIEVMYLNGTAIE-E-LPSSIEC-L 187 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p---~~~~l~~L~~L~L~~n~i~-~-lp~~i~~-l 187 (422)
+..+.+|+.|.|.|+.....+-..|..-..|+.|++++|+..+... -+..++.|..|+|+-+.+. + +...+.+ -
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 6777888888888877666666677778888899999888777665 2677888888888887665 1 1111111 2
Q ss_pred CCCCEEecCCCCCC---CcccccccCCCCCcEEEccCCCCCCC-CCcccCCCCCCCEEeccCcc
Q 014575 188 SRLSALYLDNCKRL---KSLPSSLCKLNSLNFIYLRWCSSLKS-LPDELGNLEALDSLIAEGTA 247 (422)
Q Consensus 188 ~~L~~L~L~~~~~l---~~lp~~l~~l~~L~~L~Ls~c~~l~~-lp~~~~~l~~L~~L~l~~n~ 247 (422)
..|+.|+++||... ..+..-..++++|..|||++|..+.. .-..+-.++.|++|.++.|.
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 46888888887432 12222245788899999998877654 11234567788888888774
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.02 E-value=0.0013 Score=58.47 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=79.6
Q ss_pred CCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCcccc-CCCCCCEEecCCCCCCCcccc--cccCCCCCcEE
Q 014575 141 LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIE-CLSRLSALYLDNCKRLKSLPS--SLCKLNSLNFI 217 (422)
Q Consensus 141 l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L 217 (422)
+.+...+||++|. +..++.+..++.|.+|.|++|.|+.+-+.+. .+++|..|.|.+|+ +..+-+ -+..++.|++|
T Consensus 41 ~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 4567789999975 7778888999999999999999999877664 46779999999964 443322 15678899999
Q ss_pred EccCCCCCCCCC---cccCCCCCCCEEeccCccc
Q 014575 218 YLRWCSSLKSLP---DELGNLEALDSLIAEGTAI 248 (422)
Q Consensus 218 ~Ls~c~~l~~lp---~~~~~l~~L~~L~l~~n~l 248 (422)
.+-+|+....-- -.+..+++|+.||.+.-..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999876543211 1345678999999876443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.00022 Score=66.70 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=64.6
Q ss_pred CcchhhhcCCCCcEEeccCCCCCc--cccccCCCCCCCCEEEeeCCCCCCCCcCC-CCCCCcCEEEeeCccCc--ccCcc
Q 014575 109 PNHSLTLHLDKLVNLNLNNCKSLR--ILPAGIFRLEFLKELDLWGCSKLKTLPEI-SSAGNIEVMYLNGTAIE--ELPSS 183 (422)
Q Consensus 109 ~~~~li~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~-~~l~~L~~L~L~~n~i~--~lp~~ 183 (422)
....+-...+.++.|||.+|.... .+..-+.+++.|++|+++.|+....+..+ ..+.+|+.|-|.|+.+. ..-+.
T Consensus 62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh
Confidence 333334456778889999885432 23333457889999999998766555444 35668999999998775 66677
Q ss_pred ccCCCCCCEEecCCCC
Q 014575 184 IECLSRLSALYLDNCK 199 (422)
Q Consensus 184 i~~l~~L~~L~L~~~~ 199 (422)
+..++.++.|.++.|+
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 7888888888888863
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.81 E-value=0.00075 Score=72.09 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=69.0
Q ss_pred hhcCCCCcEEeccCCCCC-ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccC--ccccCCCCC
Q 014575 114 TLHLDKLVNLNLNNCKSL-RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELP--SSIECLSRL 190 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L 190 (422)
-..||.|+.|.+++-... ..+..-..++++|..||+|+++ ++.+..++.+++|+.|.+.+=.+..-. ..+.+|++|
T Consensus 144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 446788888888774322 1223333467888888888865 555567788888888877776665433 245678888
Q ss_pred CEEecCCCCCCCcccc-------cccCCCCCcEEEccCCC
Q 014575 191 SALYLDNCKRLKSLPS-------SLCKLNSLNFIYLRWCS 223 (422)
Q Consensus 191 ~~L~L~~~~~l~~lp~-------~l~~l~~L~~L~Ls~c~ 223 (422)
+.||+|.-+.. ..+. .-..|+.|+.||.|+..
T Consensus 223 ~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 223 RVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred Ceeeccccccc-cchHHHHHHHHhcccCccccEEecCCcc
Confidence 88888874332 2221 12347788888887643
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0016 Score=59.98 Aligned_cols=85 Identities=22% Similarity=0.231 Sum_probs=50.8
Q ss_pred CCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCc--cCc-ccCccccCCCCCCEEecCCCCCC--CcccccccCCCCC
Q 014575 140 RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT--AIE-ELPSSIECLSRLSALYLDNCKRL--KSLPSSLCKLNSL 214 (422)
Q Consensus 140 ~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n--~i~-~lp~~i~~l~~L~~L~L~~~~~l--~~lp~~l~~l~~L 214 (422)
.+..|+.|.+.++. +..+..+..|++|++|.++.| .+. .++.....+++|++|++++|+.. .+++. +..+.+|
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL 118 (260)
T ss_pred cccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence 45556666665543 344445566667777777777 443 55555556677777777775432 23322 4456667
Q ss_pred cEEEccCCCCCC
Q 014575 215 NFIYLRWCSSLK 226 (422)
Q Consensus 215 ~~L~Ls~c~~l~ 226 (422)
..|++.+|....
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 777777775544
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.45 E-value=0.0012 Score=60.85 Aligned_cols=102 Identities=26% Similarity=0.264 Sum_probs=60.6
Q ss_pred CCCcEEeccCCCCCccccccCCCCCCCCEEEeeCC--CCCCCCcC-CCCCCCcCEEEeeCccCcccC--ccccCCCCCCE
Q 014575 118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGC--SKLKTLPE-ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSA 192 (422)
Q Consensus 118 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~--~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~ 192 (422)
..|+.|++.++.. .++-. +..|++|++|.++.| .....++. ...+++|++|+|++|+|..+. ..+..+.+|..
T Consensus 43 ~~le~ls~~n~gl-tt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGL-TTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccce-eeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3455555555432 22211 336677888888887 33444442 334478888888888877422 12456677888
Q ss_pred EecCCCCCCCcccc----cccCCCCCcEEEccCC
Q 014575 193 LYLDNCKRLKSLPS----SLCKLNSLNFIYLRWC 222 (422)
Q Consensus 193 L~L~~~~~l~~lp~----~l~~l~~L~~L~Ls~c 222 (422)
|++.+|.... +-. .+.-+++|++||-..+
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 8888886555 211 1455788888876553
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.36 E-value=0.00013 Score=71.15 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=60.2
Q ss_pred cCCCCcEEeccCCCCCcccc--ccCCCCCCCCEEEeeCCCCCCCCc--CC-CCCCCcCEEEeeCccCc---ccCccccCC
Q 014575 116 HLDKLVNLNLNNCKSLRILP--AGIFRLEFLKELDLWGCSKLKTLP--EI-SSAGNIEVMYLNGTAIE---ELPSSIECL 187 (422)
Q Consensus 116 ~l~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~~~~l~~~p--~~-~~l~~L~~L~L~~n~i~---~lp~~i~~l 187 (422)
.+.+|+.|+.++|...+..+ .-..+..+|+.|.+++|+.....- .+ .+...|+.+++.++... ++-+.-.+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45556666666665543322 111244566666666665433222 11 23345555555555332 232233445
Q ss_pred CCCCEEecCCCCCCCcc-----cccccCCCCCcEEEccCCCCCCC-CCcccCCCCCCCEEeccCc
Q 014575 188 SRLSALYLDNCKRLKSL-----PSSLCKLNSLNFIYLRWCSSLKS-LPDELGNLEALDSLIAEGT 246 (422)
Q Consensus 188 ~~L~~L~L~~~~~l~~l-----p~~l~~l~~L~~L~Ls~c~~l~~-lp~~~~~l~~L~~L~l~~n 246 (422)
+.|+.|.++.|...... ...-..+..|..+.|++|+.+.. .-+.+..+++|+.+++-++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 56666666655433322 22223445555555665554332 1122334455555554444
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.00023 Score=65.98 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=74.3
Q ss_pred CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCc--cccCCCCCCEEe
Q 014575 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPS--SIECLSRLSALY 194 (422)
Q Consensus 117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~ 194 (422)
+.+.+.|+.-||. +..+.- ...++.|+.|.||-|. +..+..+..+++|++|+|..|.|..+-. -+.++++|+.|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3456677787874 333332 3478999999999975 5566677788899999999999987764 468899999999
Q ss_pred cCCCCCCCccccc-----ccCCCCCcEEE
Q 014575 195 LDNCKRLKSLPSS-----LCKLNSLNFIY 218 (422)
Q Consensus 195 L~~~~~l~~lp~~-----l~~l~~L~~L~ 218 (422)
|..|...+.-+.. +.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998877766543 45678888886
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.08 E-value=0.0025 Score=35.68 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=14.1
Q ss_pred CcCEEEeeCccCcccCccccC
Q 014575 166 NIEVMYLNGTAIEELPSSIEC 186 (422)
Q Consensus 166 ~L~~L~L~~n~i~~lp~~i~~ 186 (422)
+|++|+|++|+|+.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.00035 Score=64.83 Aligned_cols=100 Identities=29% Similarity=0.398 Sum_probs=76.6
Q ss_pred CCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccccc--ccCCCCCcEE
Q 014575 140 RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSS--LCKLNSLNFI 217 (422)
Q Consensus 140 ~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~--l~~l~~L~~L 217 (422)
.+.+.+.|++.||. +..+.-..+|+.|+.|.|+-|.|+.+.+ +..+++|++|+|..| .+..+-+. +.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 46778899999985 5566667789999999999999998863 778999999999985 45554432 5788999999
Q ss_pred EccCCCCCCCCCcc-----cCCCCCCCEEe
Q 014575 218 YLRWCSSLKSLPDE-----LGNLEALDSLI 242 (422)
Q Consensus 218 ~Ls~c~~l~~lp~~-----~~~l~~L~~L~ 242 (422)
.|..|+-.+.-+.. +.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99988777665543 34567777664
No 65
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=95.69 E-value=0.0069 Score=32.83 Aligned_cols=20 Identities=35% Similarity=0.909 Sum_probs=18.1
Q ss_pred CceEEEccCCcccccccccc
Q 014575 70 KLVSIEMPHGNIQQLWDDVE 89 (422)
Q Consensus 70 ~L~~L~L~~~~l~~l~~~~~ 89 (422)
+|++|+|++++++++|++++
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999864
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.61 E-value=0.0065 Score=56.46 Aligned_cols=132 Identities=19% Similarity=0.164 Sum_probs=85.6
Q ss_pred hhcCCCCcEEeccCCCCCccccc----cCCCCCCCCEEEeeCCCCCCCCcC--C-------------CCCCCcCEEEeeC
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPA----GIFRLEFLKELDLWGCSKLKTLPE--I-------------SSAGNIEVMYLNG 174 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~Ls~~~~l~~~p~--~-------------~~l~~L~~L~L~~ 174 (422)
+..|++|+..+|+.|..-...|. -|+.-+.|.+|.|++|. ++.+.. | ..-+.|+......
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 55788899999998876655553 34567788899998875 443321 2 2356788888888
Q ss_pred ccCcccCc-----cccCCCCCCEEecCCCCCCCcccc--------cccCCCCCcEEEccCCCCCCC----CCcccCCCCC
Q 014575 175 TAIEELPS-----SIECLSRLSALYLDNCKRLKSLPS--------SLCKLNSLNFIYLRWCSSLKS----LPDELGNLEA 237 (422)
Q Consensus 175 n~i~~lp~-----~i~~l~~L~~L~L~~~~~l~~lp~--------~l~~l~~L~~L~Ls~c~~l~~----lp~~~~~l~~ 237 (422)
|++...|. .+..-..|+++.+..|..- |+ .+..+++|+.|||..|..... +-..+..-+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 88886664 2333357888888875332 33 134568889999988765432 1112233345
Q ss_pred CCEEeccCcccc
Q 014575 238 LDSLIAEGTAIR 249 (422)
Q Consensus 238 L~~L~l~~n~l~ 249 (422)
|+.|.+..|-++
T Consensus 244 lrEL~lnDClls 255 (388)
T COG5238 244 LRELRLNDCLLS 255 (388)
T ss_pred hhhccccchhhc
Confidence 788888888665
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.39 E-value=0.0018 Score=59.99 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=120.0
Q ss_pred hhhhCCCCCceEEEecCCCCCCCcee------EEccCCCCCCCeeEEEecCCCCC-CCCCCC-----CCCCceEEEccCC
Q 014575 12 DTFTKMCKLRFLKFYNSKDDGENKCK------VSYLVGPGFAEVRYLHWYGYPLK-SLPSNI-----HPEKLVSIEMPHG 79 (422)
Q Consensus 12 ~~f~~m~~L~~L~l~~~~~~~~~~~~------~~lp~~l~~~~Lr~L~l~~~~l~-~lP~~~-----~~~~L~~L~L~~~ 79 (422)
+.+++-++|+..+++... .+..... +-++.-+++++|+..+++.|-+. ..|... ....|+.|.|++|
T Consensus 52 ~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 52 NVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 455666777777776643 2221111 11222233377888888877654 233322 5567888888888
Q ss_pred ccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccc-----cCCCCCCCCEEEeeCCCC
Q 014575 80 NIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA-----GIFRLEFLKELDLWGCSK 154 (422)
Q Consensus 80 ~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~-----~i~~l~~L~~L~Ls~~~~ 154 (422)
.+-.+-. -+--+-|.++...-. ...-+.|+......|+ +...|. .+..-..|+.+.+..|.+
T Consensus 131 GlGp~aG-~rigkal~~la~nKK-----------aa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 131 GLGPIAG-GRIGKALFHLAYNKK-----------AADKPKLEVVICGRNR-LENGSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred CCCccch-hHHHHHHHHHHHHhh-----------hccCCCceEEEeccch-hccCcHHHHHHHHHhhcCceeEEeeecCc
Confidence 7754322 111122222211000 3344567777776663 333221 121224677777777643
Q ss_pred CCCC-c-----CCCCCCCcCEEEeeCccCccc-----CccccCCCCCCEEecCCCCCCCcccccc------cCCCCCcEE
Q 014575 155 LKTL-P-----EISSAGNIEVMYLNGTAIEEL-----PSSIECLSRLSALYLDNCKRLKSLPSSL------CKLNSLNFI 217 (422)
Q Consensus 155 l~~~-p-----~~~~l~~L~~L~L~~n~i~~l-----p~~i~~l~~L~~L~L~~~~~l~~lp~~l------~~l~~L~~L 217 (422)
-..- . .+..+.+|+.|+|..|-++.. ...+..++.|+.|.+.+|-....=..++ ...++|..|
T Consensus 198 rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L 277 (388)
T COG5238 198 RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPL 277 (388)
T ss_pred CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCcccc
Confidence 2210 0 134456888888888877733 2344566678888888875332211111 124566777
Q ss_pred EccCCCCCCCCCcc------c-CCCCCCCEEeccCccccccccc
Q 014575 218 YLRWCSSLKSLPDE------L-GNLEALDSLIAEGTAIREVYFF 254 (422)
Q Consensus 218 ~Ls~c~~l~~lp~~------~-~~l~~L~~L~l~~n~l~~lp~f 254 (422)
-..+|..-+.+-.. . ..++-|..|.+.||++.+...|
T Consensus 278 ~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~ 321 (388)
T COG5238 278 PGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADF 321 (388)
T ss_pred ccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHH
Confidence 77666554432221 1 3455566666777777765543
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.06 E-value=0.002 Score=63.08 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=17.1
Q ss_pred CCCCCcEEEccCCCCCCCC-----CcccCCCCCCCEEeccCcc
Q 014575 210 KLNSLNFIYLRWCSSLKSL-----PDELGNLEALDSLIAEGTA 247 (422)
Q Consensus 210 ~l~~L~~L~Ls~c~~l~~l-----p~~~~~l~~L~~L~l~~n~ 247 (422)
+++.|+.|.+++|...... -..-..+..|+.+.|+++.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 3455555555555444322 1112233445555555554
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.91 E-value=0.15 Score=41.91 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCC-CC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccC
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGP-GF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPH 78 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l-~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~ 78 (422)
.|+..+|.++++|+.+.+...- ..++... .. .+|+.+++.+. +..++... ...+|+.+.+..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~~~--------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPNTI--------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp EE-TTTTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred EECHHHHhCCCCCCEEEECCCe--------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 4677889998899988886421 1243332 22 46777766653 55555433 444566666644
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.85 E-value=0.13 Score=42.21 Aligned_cols=100 Identities=12% Similarity=0.207 Sum_probs=40.7
Q ss_pred hhcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCC
Q 014575 114 TLHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSR 189 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~ 189 (422)
+..+++|+.+.+.. ....++ ..+.+.++|+.+.+.+. +..++ .+..+++|+.+.+.+ .+..++. .+..+++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 44555666666653 233333 23444556666666552 34443 355555666666644 4444443 3344666
Q ss_pred CCEEecCCCCCCCccccc-ccCCCCCcEEEccC
Q 014575 190 LSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRW 221 (422)
Q Consensus 190 L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~ 221 (422)
|+.+.+..+ +..++.. +.+. +|+.+.+..
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 666666542 3333332 3443 666666543
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.55 E-value=0.023 Score=29.58 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=7.0
Q ss_pred CcCEEEeeCccCcccC
Q 014575 166 NIEVMYLNGTAIEELP 181 (422)
Q Consensus 166 ~L~~L~L~~n~i~~lp 181 (422)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.58 E-value=0.013 Score=59.89 Aligned_cols=131 Identities=27% Similarity=0.332 Sum_probs=80.0
Q ss_pred hhcCCCCcEEeccCCCCCcc--ccccCCCCCCCCEEEeeCC-CCCCCCc-----CCCCCCCcCEEEeeCcc-Cccc--Cc
Q 014575 114 TLHLDKLVNLNLNNCKSLRI--LPAGIFRLEFLKELDLWGC-SKLKTLP-----EISSAGNIEVMYLNGTA-IEEL--PS 182 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~-~~l~~~p-----~~~~l~~L~~L~L~~n~-i~~l--p~ 182 (422)
...++.|+.|.+.+|..+.. +-......+.|+.|++++| ......+ ....+.+|+.|+++.+. ++.. ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 44567888888888876665 3233447788888888873 3333222 13345688888888776 5532 22
Q ss_pred cccCCCCCCEEecCCCCCCC--cccccccCCCCCcEEEccCCCCCCC--CCcccCCCCCCCEEecc
Q 014575 183 SIECLSRLSALYLDNCKRLK--SLPSSLCKLNSLNFIYLRWCSSLKS--LPDELGNLEALDSLIAE 244 (422)
Q Consensus 183 ~i~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~Ls~c~~l~~--lp~~~~~l~~L~~L~l~ 244 (422)
-...+++|+.|.+.+|..+. .+-.....+++|+.|++++|..++. +.....++++|+.|.+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 22347788888888876422 2222345677889999988877632 23333445555554433
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.47 E-value=0.049 Score=28.33 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=6.9
Q ss_pred CCCEEeccCccccccc
Q 014575 237 ALDSLIAEGTAIREVY 252 (422)
Q Consensus 237 ~L~~L~l~~n~l~~lp 252 (422)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666666655544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.11 E-value=0.099 Score=29.08 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=8.6
Q ss_pred ceEEEccCCcccccccc
Q 014575 71 LVSIEMPHGNIQQLWDD 87 (422)
Q Consensus 71 L~~L~L~~~~l~~l~~~ 87 (422)
|++|+|++|+|+.++++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45555555555544443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.11 E-value=0.1 Score=30.17 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.1
Q ss_pred CCCcCEEEeeCccCcccCccc
Q 014575 164 AGNIEVMYLNGTAIEELPSSI 184 (422)
Q Consensus 164 l~~L~~L~L~~n~i~~lp~~i 184 (422)
+++|+.|+|++|+|+.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457888888888888887654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.11 E-value=0.1 Score=30.17 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.1
Q ss_pred CCCcCEEEeeCccCcccCccc
Q 014575 164 AGNIEVMYLNGTAIEELPSSI 184 (422)
Q Consensus 164 l~~L~~L~L~~n~i~~lp~~i 184 (422)
+++|+.|+|++|+|+.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457888888888888887654
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.95 E-value=0.045 Score=55.88 Aligned_cols=111 Identities=26% Similarity=0.355 Sum_probs=71.0
Q ss_pred cchhhhcCCCCcEEeccCC-CCCcccc----ccCCCCCCCCEEEeeCCCCCCCCc--CCC-CCCCcCEEEeeCcc-Cc--
Q 014575 110 NHSLTLHLDKLVNLNLNNC-KSLRILP----AGIFRLEFLKELDLWGCSKLKTLP--EIS-SAGNIEVMYLNGTA-IE-- 178 (422)
Q Consensus 110 ~~~li~~l~~L~~L~L~~~-~~l~~lp----~~i~~l~~L~~L~Ls~~~~l~~~p--~~~-~l~~L~~L~L~~n~-i~-- 178 (422)
...+...++.|+.|++++| ......+ .....+.+|+.|++++|......- .+. .+++|+.|.+.++. ++
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 3344778899999999983 3332222 223356899999999987543332 232 36799999977776 55
Q ss_pred ccCccccCCCCCCEEecCCCCCCCc--ccccccCCCCCcEEEcc
Q 014575 179 ELPSSIECLSRLSALYLDNCKRLKS--LPSSLCKLNSLNFIYLR 220 (422)
Q Consensus 179 ~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls 220 (422)
.+-.....++.|+.|++++|...+. +......+++|+.|.+.
T Consensus 286 gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 3444556788899999999987532 22223345555554443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.87 E-value=0.33 Score=28.00 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=15.4
Q ss_pred CCCCCEEeccCcccccccc
Q 014575 235 LEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 235 l~~L~~L~l~~n~l~~lp~ 253 (422)
+++|+.|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4678899999999888764
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.87 E-value=0.33 Score=28.00 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=15.4
Q ss_pred CCCCCEEeccCcccccccc
Q 014575 235 LEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 235 l~~L~~L~l~~n~l~~lp~ 253 (422)
+++|+.|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4678899999999888764
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.30 E-value=0.0082 Score=54.61 Aligned_cols=84 Identities=13% Similarity=-0.014 Sum_probs=43.4
Q ss_pred CCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEE
Q 014575 139 FRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218 (422)
Q Consensus 139 ~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 218 (422)
......+.||++.|+....--.++.++.|..|+++.|+|..+|..++.+..++.+++.. +.....|.+.+.++.+++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhh
Confidence 34444455555554322222234444455555555566655665555555555555555 34555555555566666555
Q ss_pred ccCCC
Q 014575 219 LRWCS 223 (422)
Q Consensus 219 Ls~c~ 223 (422)
+-++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 55543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.40 E-value=0.021 Score=51.98 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=78.8
Q ss_pred CCCc--CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccC
Q 014575 156 KTLP--EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELG 233 (422)
Q Consensus 156 ~~~p--~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~ 233 (422)
..+| ++......+.||++.|++..+-..+.-++.|..|+++. +...-+|..++.+..++.+++.. +.+...|.+.+
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCcccc
Confidence 4455 56677789999999999999988888899999999998 67888999999888888988876 56788999999
Q ss_pred CCCCCCEEeccCcccc
Q 014575 234 NLEALDSLIAEGTAIR 249 (422)
Q Consensus 234 ~l~~L~~L~l~~n~l~ 249 (422)
..+.++.+++.+|.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999999888753
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.08 E-value=0.25 Score=44.23 Aligned_cols=89 Identities=24% Similarity=0.308 Sum_probs=50.4
Q ss_pred CCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc-ccC
Q 014575 61 SLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-AGI 138 (422)
Q Consensus 61 ~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp-~~i 138 (422)
++|... .-..++.++-+++.|... |..+ +.+++.++.|.+.+|+.....- +.+
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~e--Gle~-----------------------L~~l~~i~~l~l~~ck~~dD~~L~~l 146 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYE--GLEH-----------------------LRDLRSIKSLSLANCKYFDDWCLERL 146 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHH--HHHH-----------------------HhccchhhhheeccccchhhHHHHHh
Confidence 555543 223577777777777643 3222 3345556667777776554321 112
Q ss_pred C-CCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeC
Q 014575 139 F-RLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNG 174 (422)
Q Consensus 139 ~-~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~ 174 (422)
+ -.++|+.|++++|..++..- .+..+++|+.|.|.+
T Consensus 147 ~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 147 GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 2 34677888888877665544 355666666665543
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.10 E-value=1.4 Score=25.68 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=15.4
Q ss_pred CCCCEEeccCccccccccc
Q 014575 236 EALDSLIAEGTAIREVYFF 254 (422)
Q Consensus 236 ~~L~~L~l~~n~l~~lp~f 254 (422)
++|+.|++++|+++++|++
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 3678889999999988864
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.89 E-value=0.061 Score=55.20 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=21.2
Q ss_pred eeEEEecCCCCCCCCCCC------CCCCceEEEccCCccc
Q 014575 49 VRYLHWYGYPLKSLPSNI------HPEKLVSIEMPHGNIQ 82 (422)
Q Consensus 49 Lr~L~l~~~~l~~lP~~~------~~~~L~~L~L~~~~l~ 82 (422)
+..|.+.+|++..-.... ....|..|+++.|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 666777777665433211 3456777788877776
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.84 E-value=2.6 Score=24.53 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=10.2
Q ss_pred CCcCEEEeeCccCccc
Q 014575 165 GNIEVMYLNGTAIEEL 180 (422)
Q Consensus 165 ~~L~~L~L~~n~i~~l 180 (422)
++|+.|+|+.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4667777777766543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.72 E-value=0.95 Score=40.60 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=26.2
Q ss_pred CCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeC
Q 014575 117 LDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWG 151 (422)
Q Consensus 117 l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~ 151 (422)
.++|+.|+|++|..++.-. ..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 4679999999998776533 2345788888888776
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=64.06 E-value=3.6 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=6.7
Q ss_pred CCcCEEEeeCccCc
Q 014575 165 GNIEVMYLNGTAIE 178 (422)
Q Consensus 165 ~~L~~L~L~~n~i~ 178 (422)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 35566666665554
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=58.38 E-value=7.6 Score=22.22 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=8.9
Q ss_pred CCCcEEEccCCCCCC
Q 014575 212 NSLNFIYLRWCSSLK 226 (422)
Q Consensus 212 ~~L~~L~Ls~c~~l~ 226 (422)
++|+.|+|++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666665443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.77 E-value=14 Score=21.66 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=8.3
Q ss_pred CcCEEEeeCccCc
Q 014575 166 NIEVMYLNGTAIE 178 (422)
Q Consensus 166 ~L~~L~L~~n~i~ 178 (422)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 5666666666654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.68 E-value=8.4 Score=39.76 Aligned_cols=66 Identities=20% Similarity=0.086 Sum_probs=43.0
Q ss_pred CCCCcCEEEeeCccCccc---CccccCCCCCCEEecCCCCCCCcccccccC--CCCCcEEEccCCCCCCCC
Q 014575 163 SAGNIEVMYLNGTAIEEL---PSSIECLSRLSALYLDNCKRLKSLPSSLCK--LNSLNFIYLRWCSSLKSL 228 (422)
Q Consensus 163 ~l~~L~~L~L~~n~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~--l~~L~~L~Ls~c~~l~~l 228 (422)
+.+.+..++|++|++..+ .+-....++|+.|+|++|......-.++.+ ...|++|-+.||+..+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 355778888999987644 334466789999999997322221122322 235789999998876643
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.59 E-value=33 Score=35.58 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=48.7
Q ss_pred CCCCCCEEEeeCCCCCCCCcCC----CCCCCcCEEEeeCc--cCcccCc--cccCCCCCCEEecCCCCCCCccccc----
Q 014575 140 RLEFLKELDLWGCSKLKTLPEI----SSAGNIEVMYLNGT--AIEELPS--SIECLSRLSALYLDNCKRLKSLPSS---- 207 (422)
Q Consensus 140 ~l~~L~~L~Ls~~~~l~~~p~~----~~l~~L~~L~L~~n--~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~---- 207 (422)
+.+.+..+.|++|+ +..+..+ ...++|+.|+|++| .+...+. .++ ...|++|.|.||......-..
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccccchhhhHHHH
Confidence 67788888999976 4444432 34568999999999 4442221 122 236899999998776644221
Q ss_pred ---ccCCCCCcEEE
Q 014575 208 ---LCKLNSLNFIY 218 (422)
Q Consensus 208 ---l~~l~~L~~L~ 218 (422)
-..++.|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 12456776665
No 92
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=24.09 E-value=3.5 Score=42.51 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=78.0
Q ss_pred CcEEeccCCCCCcc----ccccCCCCCCCCEEEeeCCCCCCCCc------CCCCC-CCcCEEEeeCccCc-----ccCcc
Q 014575 120 LVNLNLNNCKSLRI----LPAGIFRLEFLKELDLWGCSKLKTLP------EISSA-GNIEVMYLNGTAIE-----ELPSS 183 (422)
Q Consensus 120 L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~~~~l~~~p------~~~~l-~~L~~L~L~~n~i~-----~lp~~ 183 (422)
+..|.|.+|..... +-..+.-..+|+.|++++|... ..- .+... ..|++|.+..+.++ .+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 67778888754432 2234455678888899988754 211 12222 45777777777766 34455
Q ss_pred ccCCCCCCEEecCCCCCCC----ccccc----ccCCCCCcEEEccCCCCCCC----CCcccCCCCC-CCEEeccCccccc
Q 014575 184 IECLSRLSALYLDNCKRLK----SLPSS----LCKLNSLNFIYLRWCSSLKS----LPDELGNLEA-LDSLIAEGTAIRE 250 (422)
Q Consensus 184 i~~l~~L~~L~L~~~~~l~----~lp~~----l~~l~~L~~L~Ls~c~~l~~----lp~~~~~l~~-L~~L~l~~n~l~~ 250 (422)
+.....|+.++++.|.... .++.. +....++++|.+++|..... +-..+...++ +..|+++.|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6667788888888865421 12222 23467788888888765421 1112333344 6668888887653
Done!