Query 014575
Match_columns 422
No_of_seqs 364 out of 3216
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.1E-25 7.3E-30 216.6 20.2 200 16-249 79-290 (328)
2 3rgz_A Protein brassinosteroid 99.9 5.1E-25 1.7E-29 237.4 16.2 232 10-249 410-717 (768)
3 4fcg_A Uncharacterized protein 99.9 2.1E-24 7.3E-29 209.6 16.6 216 12-252 98-317 (328)
4 1ogq_A PGIP-2, polygalacturona 99.9 3.5E-25 1.2E-29 213.6 6.4 210 11-253 69-286 (313)
5 3rgz_A Protein brassinosteroid 99.9 9.1E-24 3.1E-28 227.6 15.8 187 11-205 360-555 (768)
6 3v47_A TOLL-like receptor 5B a 99.9 3.7E-23 1.2E-27 209.0 18.7 238 7-251 43-362 (455)
7 3zyi_A Leucine-rich repeat-con 99.9 1.7E-22 5.8E-27 204.5 21.4 222 19-249 76-303 (452)
8 3zyj_A Leucine-rich repeat-con 99.9 2E-22 6.7E-27 203.3 20.3 223 18-249 64-292 (440)
9 2z7x_B TOLL-like receptor 1, v 99.9 6.5E-23 2.2E-27 210.8 16.7 84 7-97 34-120 (520)
10 2id5_A Lingo-1, leucine rich r 99.9 1.4E-22 4.9E-27 206.1 19.0 241 7-253 45-313 (477)
11 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-22 3.7E-27 211.5 18.2 85 6-97 64-151 (562)
12 1xku_A Decorin; proteoglycan, 99.9 7E-22 2.4E-26 191.5 22.0 222 18-253 52-280 (330)
13 2id5_A Lingo-1, leucine rich r 99.9 2.4E-22 8.3E-27 204.5 19.0 225 18-251 32-263 (477)
14 3v47_A TOLL-like receptor 5B a 99.9 2E-22 6.9E-27 203.5 17.4 240 8-253 69-388 (455)
15 2z66_A Variable lymphocyte rec 99.9 8.7E-23 3E-27 195.7 13.8 226 18-251 28-263 (306)
16 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-23 4.4E-28 202.7 8.0 204 18-252 50-261 (313)
17 3o6n_A APL1; leucine-rich repe 99.9 3.6E-22 1.2E-26 198.0 17.0 232 8-253 59-312 (390)
18 3t6q_A CD180 antigen; protein- 99.9 4.9E-22 1.7E-26 208.0 17.6 239 7-252 46-366 (606)
19 4eco_A Uncharacterized protein 99.9 4.3E-23 1.5E-27 217.8 9.6 212 40-253 198-450 (636)
20 2ft3_A Biglycan; proteoglycan, 99.9 3.3E-22 1.1E-26 194.1 14.9 231 7-249 67-307 (332)
21 3t6q_A CD180 antigen; protein- 99.9 4.1E-22 1.4E-26 208.6 16.5 236 9-251 269-515 (606)
22 4eco_A Uncharacterized protein 99.9 1.6E-22 5.5E-27 213.4 13.4 228 13-252 325-582 (636)
23 3zyi_A Leucine-rich repeat-con 99.9 2.2E-21 7.4E-26 196.3 19.6 210 40-253 69-283 (452)
24 1ozn_A Reticulon 4 receptor; N 99.9 3.1E-21 1.1E-25 183.0 19.3 137 114-250 101-239 (285)
25 4ecn_A Leucine-rich repeat pro 99.9 2.2E-21 7.4E-26 210.1 19.3 231 12-253 567-823 (876)
26 3oja_B Anopheles plasmodium-re 99.9 1.3E-21 4.5E-26 204.9 17.1 231 8-253 65-318 (597)
27 3o6n_A APL1; leucine-rich repe 99.9 2.3E-21 7.9E-26 192.2 17.8 234 7-252 82-334 (390)
28 4ecn_A Leucine-rich repeat pro 99.9 2.1E-21 7.1E-26 210.3 18.8 218 14-245 544-785 (876)
29 3zyj_A Leucine-rich repeat-con 99.9 3E-21 1E-25 194.6 18.3 210 40-253 58-272 (440)
30 3vq2_A TLR4, TOLL-like recepto 99.9 6.9E-22 2.3E-26 206.9 13.2 227 14-251 281-512 (606)
31 3vq2_A TLR4, TOLL-like recepto 99.9 2.1E-21 7E-26 203.3 16.0 230 13-253 302-538 (606)
32 2z80_A TOLL-like receptor 2, v 99.9 1E-21 3.6E-26 192.1 12.4 224 19-251 53-316 (353)
33 3j0a_A TOLL-like receptor 5; m 99.9 3.4E-21 1.2E-25 209.6 17.3 111 143-253 267-379 (844)
34 4fmz_A Internalin; leucine ric 99.9 5.2E-21 1.8E-25 186.4 16.1 223 12-253 104-328 (347)
35 3oja_B Anopheles plasmodium-re 99.9 6.1E-21 2.1E-25 199.8 17.5 234 7-252 88-340 (597)
36 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-20 5.8E-25 196.4 19.0 160 139-300 417-589 (635)
37 2ft3_A Biglycan; proteoglycan, 99.8 7E-21 2.4E-25 184.7 14.6 200 47-252 54-280 (332)
38 4fmz_A Internalin; leucine ric 99.8 1.5E-20 5.1E-25 183.1 16.2 222 13-252 61-303 (347)
39 2o6q_A Variable lymphocyte rec 99.8 1.8E-19 6.2E-24 169.7 22.8 198 19-249 17-218 (270)
40 2z66_A Variable lymphocyte rec 99.8 1.5E-20 5E-25 180.1 15.5 208 40-251 22-238 (306)
41 1ozn_A Reticulon 4 receptor; N 99.8 7.2E-20 2.4E-24 173.6 19.0 180 47-252 32-217 (285)
42 1wwl_A Monocyte differentiatio 99.8 6.1E-21 2.1E-25 183.7 11.8 198 16-250 93-310 (312)
43 1xku_A Decorin; proteoglycan, 99.8 9.7E-20 3.3E-24 176.4 18.9 222 17-253 30-257 (330)
44 3bz5_A Internalin-J, INLJ; leu 99.8 6.1E-20 2.1E-24 186.1 18.0 212 13-252 37-249 (457)
45 3rfs_A Internalin B, repeat mo 99.8 2.8E-20 9.6E-25 175.5 14.2 176 47-249 41-218 (272)
46 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-20 4.6E-25 193.5 12.7 125 18-154 21-150 (520)
47 1p9a_G Platelet glycoprotein I 99.8 1.8E-19 6.2E-24 171.7 19.3 199 13-249 5-208 (290)
48 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-20 5.3E-25 181.3 11.8 221 11-249 27-250 (317)
49 2z81_A CD282 antigen, TOLL-lik 99.8 3.6E-21 1.2E-25 198.9 7.4 128 8-142 40-172 (549)
50 3oja_A Leucine-rich immune mol 99.8 1E-20 3.5E-25 193.4 10.3 220 12-249 24-250 (487)
51 1ziw_A TOLL-like receptor 3; i 99.8 1.9E-19 6.5E-24 190.9 19.9 235 9-251 320-599 (680)
52 2z63_A TOLL-like receptor 4, v 99.8 2.1E-20 7.1E-25 193.9 12.1 233 10-252 274-510 (570)
53 3m19_A Variable lymphocyte rec 99.8 5.1E-19 1.8E-23 164.7 19.8 178 47-251 14-194 (251)
54 1o6v_A Internalin A; bacterial 99.8 1.1E-19 3.8E-24 184.5 16.5 170 14-197 64-252 (466)
55 1ziw_A TOLL-like receptor 3; i 99.8 1.8E-19 6.2E-24 191.1 18.2 234 11-250 265-518 (680)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.6E-20 2.6E-24 190.0 14.9 125 18-154 52-181 (562)
57 1h6u_A Internalin H; cell adhe 99.8 9.5E-20 3.2E-24 175.2 14.5 197 14-253 37-234 (308)
58 2z62_A TOLL-like receptor 4, v 99.8 2.9E-19 9.9E-24 168.6 17.5 199 19-249 29-237 (276)
59 3oja_A Leucine-rich immune mol 99.8 2.5E-21 8.4E-26 198.0 3.5 220 8-244 48-270 (487)
60 3rfs_A Internalin B, repeat mo 99.8 7.3E-19 2.5E-23 165.8 19.9 197 13-249 36-235 (272)
61 1o6v_A Internalin A; bacterial 99.8 1.7E-19 6E-24 183.0 16.3 220 13-254 151-371 (466)
62 3bz5_A Internalin-J, INLJ; leu 99.8 1E-18 3.5E-23 177.1 21.5 208 13-249 59-267 (457)
63 2z80_A TOLL-like receptor 2, v 99.8 4.4E-20 1.5E-24 180.6 10.8 224 17-252 30-293 (353)
64 2z63_A TOLL-like receptor 4, v 99.8 9.5E-20 3.2E-24 188.9 12.3 227 12-250 299-532 (570)
65 3j0a_A TOLL-like receptor 5; m 99.8 4E-19 1.4E-23 193.3 17.4 239 8-253 38-355 (844)
66 2o6q_A Variable lymphocyte rec 99.8 2.6E-18 8.9E-23 161.7 20.5 179 47-252 16-197 (270)
67 2z62_A TOLL-like receptor 4, v 99.8 5.9E-19 2E-23 166.5 15.7 186 40-252 22-216 (276)
68 1p9a_G Platelet glycoprotein I 99.8 2.9E-18 9.8E-23 163.4 19.9 176 47-252 10-188 (290)
69 2z81_A CD282 antigen, TOLL-lik 99.8 6.5E-20 2.2E-24 189.5 9.0 140 18-164 26-171 (549)
70 1jl5_A Outer protein YOPM; leu 99.8 2.1E-19 7.3E-24 182.0 11.5 214 11-253 27-254 (454)
71 1wwl_A Monocyte differentiatio 99.8 9.4E-20 3.2E-24 175.4 7.4 183 47-253 95-291 (312)
72 2xwt_C Thyrotropin receptor; s 99.8 1.6E-18 5.5E-23 160.0 14.2 180 47-253 31-222 (239)
73 2xwt_C Thyrotropin receptor; s 99.8 3.4E-18 1.2E-22 157.8 15.6 192 18-246 31-236 (239)
74 4glp_A Monocyte differentiatio 99.8 6.9E-19 2.3E-23 169.1 11.2 183 47-253 91-289 (310)
75 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-19 6.6E-24 173.6 6.4 222 8-246 48-272 (317)
76 1h6u_A Internalin H; cell adhe 99.8 1.7E-17 5.9E-22 159.3 18.4 173 47-254 41-213 (308)
77 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-17 5E-22 174.4 19.0 58 18-86 61-118 (622)
78 1jl5_A Outer protein YOPM; leu 99.8 8.4E-18 2.9E-22 170.2 16.1 216 2-252 153-373 (454)
79 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 8.9E-22 156.8 16.5 171 47-252 46-216 (291)
80 3m19_A Variable lymphocyte rec 99.7 9.1E-17 3.1E-21 149.5 19.2 176 19-227 15-194 (251)
81 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-16 4.5E-21 167.1 21.8 201 18-253 40-258 (622)
82 2ca6_A RAN GTPase-activating p 99.7 4.5E-20 1.5E-24 182.7 -5.1 239 11-251 25-318 (386)
83 2o6s_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 146.5 15.2 108 115-222 49-158 (208)
84 3cvr_A Invasion plasmid antige 99.7 8.6E-17 3E-21 166.7 18.2 186 11-250 47-244 (571)
85 4glp_A Monocyte differentiatio 99.7 1.6E-17 5.6E-22 159.4 11.6 198 16-250 89-308 (310)
86 1m9s_A Internalin B; cell inva 99.7 7.1E-17 2.4E-21 168.8 16.4 172 47-253 43-214 (605)
87 4g8a_A TOLL-like receptor 4; l 99.7 5.2E-17 1.8E-21 169.8 15.0 229 12-249 322-580 (635)
88 2o6s_A Variable lymphocyte rec 99.7 1.3E-16 4.5E-21 144.0 13.7 159 47-237 28-190 (208)
89 2ast_B S-phase kinase-associat 99.7 3.2E-18 1.1E-22 165.7 3.1 198 47-246 70-282 (336)
90 2xot_A Amphoterin-induced prot 99.7 1.6E-16 5.3E-21 156.0 12.9 173 49-249 20-202 (361)
91 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.7E-21 141.4 12.5 152 67-250 42-195 (197)
92 1h6t_A Internalin B; cell adhe 99.7 1.9E-16 6.6E-21 150.8 12.7 173 13-226 41-214 (291)
93 2v70_A SLIT-2, SLIT homolog 2 99.7 8.3E-16 2.8E-20 140.3 16.2 111 139-249 54-166 (220)
94 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.7E-21 149.6 10.6 170 47-252 19-188 (263)
95 3e6j_A Variable lymphocyte rec 99.7 1.5E-15 5E-20 139.5 17.2 128 120-249 42-172 (229)
96 2v9t_B SLIT homolog 2 protein 99.7 1.3E-15 4.5E-20 138.9 16.6 112 138-249 52-165 (220)
97 4ay9_X Follicle-stimulating ho 99.7 6.5E-17 2.2E-21 158.0 7.9 209 40-254 24-242 (350)
98 2v9t_B SLIT homolog 2 protein 99.7 1.2E-15 4E-20 139.3 15.7 127 122-252 15-144 (220)
99 1m9s_A Internalin B; cell inva 99.7 2.4E-16 8.1E-21 164.8 12.3 172 14-226 39-211 (605)
100 2v70_A SLIT-2, SLIT homolog 2 99.7 1.3E-15 4.4E-20 139.0 15.7 108 144-251 34-144 (220)
101 4ezg_A Putative uncharacterize 99.7 5.9E-16 2E-20 138.6 12.4 148 47-224 44-193 (197)
102 3e6j_A Variable lymphocyte rec 99.7 3.4E-15 1.1E-19 137.1 17.5 128 121-252 22-151 (229)
103 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.6E-20 148.6 15.4 216 18-246 30-256 (350)
104 3cvr_A Invasion plasmid antige 99.6 3.9E-15 1.3E-19 154.2 18.5 159 47-253 59-224 (571)
105 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.8E-20 132.3 12.6 135 116-253 22-164 (168)
106 2ast_B S-phase kinase-associat 99.6 1.7E-16 5.7E-21 153.5 4.0 198 47-247 47-258 (336)
107 2xot_A Amphoterin-induced prot 99.6 6.2E-15 2.1E-19 144.6 14.1 171 21-225 21-202 (361)
108 1dce_A Protein (RAB geranylger 99.6 4.4E-17 1.5E-21 169.2 -1.8 183 67-253 347-550 (567)
109 3goz_A Leucine-rich repeat-con 99.6 7.2E-17 2.5E-21 158.4 -0.9 238 11-250 15-298 (362)
110 2ca6_A RAN GTPase-activating p 99.6 6E-17 2E-21 160.2 -2.2 210 41-250 25-288 (386)
111 1z7x_W Ribonuclease inhibitor; 99.6 2.2E-17 7.6E-22 166.6 -6.6 16 14-29 24-39 (461)
112 1xeu_A Internalin C; cellular 99.6 2E-14 6.9E-19 134.7 14.0 170 16-227 17-187 (263)
113 1dce_A Protein (RAB geranylger 99.6 4.5E-17 1.5E-21 169.1 -4.9 192 47-243 349-567 (567)
114 2je0_A Acidic leucine-rich nuc 99.6 6.9E-15 2.4E-19 125.3 8.3 127 117-245 16-149 (149)
115 1w8a_A SLIT protein; signaling 99.6 3.1E-14 1.1E-18 126.9 12.9 127 121-250 11-140 (192)
116 1z7x_W Ribonuclease inhibitor; 99.5 2.8E-17 9.4E-22 165.9 -8.6 233 16-250 140-412 (461)
117 3goz_A Leucine-rich repeat-con 99.5 8.4E-16 2.9E-20 150.8 0.7 224 22-251 2-268 (362)
118 4b8c_D Glucose-repressible alc 99.5 5.6E-15 1.9E-19 157.8 4.6 133 48-208 202-336 (727)
119 2ell_A Acidic leucine-rich nuc 99.5 8.7E-14 3E-18 120.9 11.3 135 67-231 22-165 (168)
120 4b8c_D Glucose-repressible alc 99.5 2.6E-14 8.8E-19 152.7 9.0 134 113-249 219-354 (727)
121 1w8a_A SLIT protein; signaling 99.5 3.3E-13 1.1E-17 120.2 13.9 131 50-205 11-143 (192)
122 2wfh_A SLIT homolog 2 protein 99.5 7.8E-13 2.7E-17 118.0 14.2 123 50-199 13-137 (193)
123 1a9n_A U2A', U2A'; complex (nu 99.5 1E-13 3.4E-18 121.7 8.1 133 114-251 15-155 (176)
124 2wfh_A SLIT homolog 2 protein 99.5 7.7E-13 2.6E-17 118.0 13.8 125 121-249 13-139 (193)
125 2je0_A Acidic leucine-rich nuc 99.4 1.1E-13 3.8E-18 117.8 7.6 126 67-221 15-149 (149)
126 2o6r_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 113.6 14.3 130 49-204 9-140 (177)
127 2o6r_A Variable lymphocyte rec 99.4 2.6E-12 8.7E-17 112.6 15.2 128 120-251 9-139 (177)
128 1a9n_A U2A', U2A'; complex (nu 99.4 3.7E-13 1.3E-17 118.0 8.3 102 119-223 43-151 (176)
129 3ogk_B Coronatine-insensitive 99.3 6.8E-14 2.3E-18 145.5 -0.4 201 47-249 270-501 (592)
130 3ogk_B Coronatine-insensitive 99.3 4.6E-14 1.6E-18 146.8 -4.4 148 47-196 192-350 (592)
131 1ds9_A Outer arm dynein; leuci 99.3 2.3E-14 7.9E-19 128.2 -7.6 129 114-249 44-185 (198)
132 1ds9_A Outer arm dynein; leuci 99.2 4.1E-14 1.4E-18 126.6 -8.2 131 117-251 17-155 (198)
133 3g39_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 101.8 12.3 104 144-251 11-117 (170)
134 2r9u_A Variable lymphocyte rec 99.2 1.7E-10 5.9E-15 100.9 12.8 103 145-252 15-121 (174)
135 3g39_A Variable lymphocyte rec 99.2 1.6E-10 5.5E-15 100.6 12.3 103 120-226 11-116 (170)
136 2r9u_A Variable lymphocyte rec 99.2 1.5E-10 5.1E-15 101.3 12.1 102 120-225 14-118 (174)
137 3sb4_A Hypothetical leucine ri 99.2 4.7E-11 1.6E-15 115.2 9.6 86 164-253 225-314 (329)
138 2p1m_B Transport inhibitor res 99.2 4.1E-13 1.4E-17 139.6 -6.1 14 15-28 208-221 (594)
139 2p1m_B Transport inhibitor res 99.2 5.9E-14 2E-18 146.0 -12.6 229 15-249 102-385 (594)
140 4fdw_A Leucine rich hypothetic 99.1 3E-09 1E-13 105.5 17.0 223 8-252 126-361 (401)
141 2ifg_A High affinity nerve gro 99.1 7.6E-10 2.6E-14 107.3 11.7 100 122-223 12-114 (347)
142 3sb4_A Hypothetical leucine ri 98.9 2.1E-09 7.1E-14 103.6 10.0 219 8-243 83-328 (329)
143 4fdw_A Leucine rich hypothetic 98.9 3E-08 1E-12 98.3 18.0 222 8-249 148-383 (401)
144 2ifg_A High affinity nerve gro 98.9 5.1E-09 1.7E-13 101.4 10.8 85 114-198 27-113 (347)
145 3un9_A NLR family member X1; l 98.9 9.9E-11 3.4E-15 115.1 -2.5 163 68-251 71-254 (372)
146 3un9_A NLR family member X1; l 98.7 8.1E-10 2.8E-14 108.6 -1.1 179 47-249 72-283 (372)
147 2ra8_A Uncharacterized protein 98.5 7.6E-08 2.6E-12 94.0 4.6 135 112-249 166-320 (362)
148 2ra8_A Uncharacterized protein 98.4 7.7E-08 2.6E-12 94.0 3.1 60 164-223 251-318 (362)
149 4gt6_A Cell surface protein; l 98.0 6.2E-05 2.1E-09 73.9 14.6 103 138-247 261-368 (394)
150 1io0_A Tropomodulin; LRR prote 98.0 2E-06 6.7E-11 75.6 2.2 82 114-195 32-128 (185)
151 1io0_A Tropomodulin; LRR prote 98.0 1.1E-06 3.9E-11 77.2 0.3 115 135-249 29-164 (185)
152 4fs7_A Uncharacterized protein 97.9 5.3E-05 1.8E-09 74.4 11.8 122 114-245 249-375 (394)
153 3e4g_A ATP synthase subunit S, 97.8 9E-06 3.1E-10 70.6 3.4 86 142-227 61-154 (176)
154 3rw6_A Nuclear RNA export fact 97.8 1.3E-05 4.4E-10 74.6 4.4 77 164-242 169-257 (267)
155 3rw6_A Nuclear RNA export fact 97.8 9.9E-06 3.4E-10 75.4 3.5 80 139-219 167-258 (267)
156 3e4g_A ATP synthase subunit S, 97.7 2.1E-05 7.3E-10 68.2 4.5 34 120-153 63-96 (176)
157 4h09_A Hypothetical leucine ri 97.7 0.0013 4.3E-08 64.0 17.7 62 8-78 59-122 (379)
158 4fs7_A Uncharacterized protein 97.7 0.00083 2.8E-08 65.8 16.5 20 8-27 61-80 (394)
159 4gt6_A Cell surface protein; l 97.5 0.0014 4.6E-08 64.2 14.2 88 161-253 261-350 (394)
160 4h09_A Hypothetical leucine ri 97.0 0.017 5.9E-07 55.8 15.7 55 140-196 261-318 (379)
161 1pgv_A TMD-1, tropomodulin TMD 95.4 0.01 3.4E-07 52.3 3.7 85 114-198 37-136 (197)
162 3rfe_A Platelet glycoprotein I 95.3 0.033 1.1E-06 45.4 6.3 52 146-199 12-66 (130)
163 3rfe_A Platelet glycoprotein I 95.0 0.044 1.5E-06 44.6 6.2 50 169-221 12-64 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.8 0.0089 3E-07 52.6 1.5 111 138-248 37-169 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.1e-25 Score=216.63 Aligned_cols=200 Identities=21% Similarity=0.281 Sum_probs=165.6
Q ss_pred CCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcc
Q 014575 16 KMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGK 93 (422)
Q Consensus 16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~ 93 (422)
...+++.|++++|.+. .+|..+.. ++|++|++++|.+..+|..+ .+++|++|+|++|.+..++..
T Consensus 79 ~~~~l~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~------ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-------QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS------ 145 (328)
T ss_dssp TSTTCCEEEEESSCCS-------SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG------
T ss_pred cccceeEEEccCCCch-------hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH------
Confidence 4578999999998753 36777766 89999999999999999877 888999999999988866544
Q ss_pred hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCC---------CCCCCEEEeeCCCCCCCCc-CCCC
Q 014575 94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR---------LEFLKELDLWGCSKLKTLP-EISS 163 (422)
Q Consensus 94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~---------l~~L~~L~Ls~~~~l~~~p-~~~~ 163 (422)
++.+++|++|+|++|...+.+|..+.. +++|++|++++|... .+| .++.
T Consensus 146 --------------------l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~ 204 (328)
T 4fcg_A 146 --------------------IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204 (328)
T ss_dssp --------------------GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred --------------------HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence 567778888888888888888876654 888888888888655 566 5788
Q ss_pred CCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575 164 AGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA 243 (422)
Q Consensus 164 l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l 243 (422)
+++|++|+|++|.++.+|..++.+++|++|++++|+..+.+|..++.+++|+.|++++|+..+.+|..++.+++|+.|++
T Consensus 205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCcccc
Q 014575 244 EGTAIR 249 (422)
Q Consensus 244 ~~n~l~ 249 (422)
++|.+.
T Consensus 285 ~~n~~~ 290 (328)
T 4fcg_A 285 RGCVNL 290 (328)
T ss_dssp TTCTTC
T ss_pred CCCCch
Confidence 888765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=5.1e-25 Score=237.39 Aligned_cols=232 Identities=18% Similarity=0.186 Sum_probs=127.9
Q ss_pred ChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCcccc-cc
Q 014575 10 HPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLK-SLPSNI-HPEKLVSIEMPHGNIQQ-LW 85 (422)
Q Consensus 10 ~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~-~lP~~~-~~~~L~~L~L~~~~l~~-l~ 85 (422)
-|.+|.++++|+.|++++|.+.+. +|..+.. ++|++|++.+|.+. .+|..+ .+++|++|++++|++.+ ++
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~------~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGT------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESC------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCHHHhcCCCCCEEECcCCcccCc------ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 345556666666666665543221 3444444 56666666666655 445544 55666666666666653 33
Q ss_pred ccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-----
Q 014575 86 DDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE----- 160 (422)
Q Consensus 86 ~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~----- 160 (422)
..+..+++|+++....+.+. ...|..++.+++|++|+|++|...+.+|..+.++++|+.|++++|...+.+|.
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLT--GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred HHHhcCCCCCEEEccCCccC--CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 44455555555532222221 12233355666666666666665556666666666666666666654433331
Q ss_pred ------------------------------------------------------------------CCCCCCcCEEEeeC
Q 014575 161 ------------------------------------------------------------------ISSAGNIEVMYLNG 174 (422)
Q Consensus 161 ------------------------------------------------------------------~~~l~~L~~L~L~~ 174 (422)
+..+++|+.|+|++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 22234555666666
Q ss_pred ccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 175 TAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 175 n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
|+++ .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|||++|+..+.+|..++.+++|+.|++++|+++
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 6655 55556666666666666665555566666666666666666666555566666666666666666666554
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.1e-24 Score=209.56 Aligned_cols=216 Identities=22% Similarity=0.250 Sum_probs=183.4
Q ss_pred hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccc-ccccc
Q 014575 12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQ-LWDDV 88 (422)
Q Consensus 12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~-l~~~~ 88 (422)
..+.++++|++|++++|.+. .+|..+.. ++|++|++++|.+..+|..+ .+++|++|+|++|++.+ ++..+
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-------~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-------ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-------CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred hhhhhCCCCCEEECCCCCcc-------chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 44777999999999998753 37877777 99999999999999999888 88999999999976554 43332
Q ss_pred cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcC
Q 014575 89 EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE 168 (422)
Q Consensus 89 ~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~ 168 (422)
... .....++.+++|++|+|++|.. ..+|..+.++++|+.|++++|...+..+.+..+++|+
T Consensus 171 ~~~-----------------~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 171 AST-----------------DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp EEE-----------------C-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred hhc-----------------cchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 110 0011156789999999999854 4899989999999999999998776555799999999
Q ss_pred EEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575 169 VMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA 247 (422)
Q Consensus 169 ~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~ 247 (422)
+|+|++|.+. .+|..++.+++|+.|++++|+..+.+|..+..+++|+.|+|++|+.++.+|+.++++++|+.+++..+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999998775 789999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccc
Q 014575 248 IREVY 252 (422)
Q Consensus 248 l~~lp 252 (422)
+..++
T Consensus 313 ~~~l~ 317 (328)
T 4fcg_A 313 QAQLD 317 (328)
T ss_dssp SCC--
T ss_pred HHHHh
Confidence 76554
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=3.5e-25 Score=213.60 Aligned_cols=210 Identities=15% Similarity=0.165 Sum_probs=136.0
Q ss_pred hhhhhCCCCCceEEEec-CCCCCCCceeEEccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCccccccc
Q 014575 11 PDTFTKMCKLRFLKFYN-SKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLK-SLPSNI-HPEKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~-~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~-~lP~~~-~~~~L~~L~L~~~~l~~l~~ 86 (422)
|.+|.++++|++|++++ |.+.+ .+|..+.. ++|++|++++|.+. .+|..+ .+++|++|+|++|.+.+.
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-- 140 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVG------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-- 140 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEES------CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC--
T ss_pred ChhHhCCCCCCeeeCCCCCcccc------cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc--
Confidence 34566666666666663 43221 14444444 66666666666665 455545 556666666666666532
Q ss_pred cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCC-CCCEEEeeCCCCCCCCc-CCCCC
Q 014575 87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLE-FLKELDLWGCSKLKTLP-EISSA 164 (422)
Q Consensus 87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~l~~~p-~~~~l 164 (422)
.+..++.+++|++|++++|...+.+|..+..++ +|+.|++++|...+.+| .+..+
T Consensus 141 -----------------------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 141 -----------------------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp -----------------------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred -----------------------CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 112256677777777777766667777777776 77777777776665555 45555
Q ss_pred CCcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575 165 GNIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA 243 (422)
Q Consensus 165 ~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l 243 (422)
+ |+.|+|++|.++ .+|..+..+++|+.|++++|...+.+|. +..+++|++|++++|...+.+|..+..+++|+.|++
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 5 777777777776 4455677777777777777665555554 667777777777777776677777777777777777
Q ss_pred cCcccc-cccc
Q 014575 244 EGTAIR-EVYF 253 (422)
Q Consensus 244 ~~n~l~-~lp~ 253 (422)
++|.++ .+|.
T Consensus 276 s~N~l~~~ip~ 286 (313)
T 1ogq_A 276 SFNNLCGEIPQ 286 (313)
T ss_dssp CSSEEEEECCC
T ss_pred cCCcccccCCC
Confidence 777776 4444
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=9.1e-24 Score=227.61 Aligned_cols=187 Identities=16% Similarity=0.180 Sum_probs=103.1
Q ss_pred hhhhhCCC-CCceEEEecCCCCCCCceeEEccCCCCC---CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCcccc-
Q 014575 11 PDTFTKMC-KLRFLKFYNSKDDGENKCKVSYLVGPGF---AEVRYLHWYGYPLK-SLPSNI-HPEKLVSIEMPHGNIQQ- 83 (422)
Q Consensus 11 ~~~f~~m~-~L~~L~l~~~~~~~~~~~~~~lp~~l~~---~~Lr~L~l~~~~l~-~lP~~~-~~~~L~~L~L~~~~l~~- 83 (422)
|.+|.+++ +|+.|++++|.+.+ .+|..+.. ++|++|++.+|.+. .+|..+ .+++|++|++++|.+.+
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~------~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSG------PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEE------ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred cHHHHhhhcCCcEEEccCCCcCC------CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 45566666 78888888765321 23433332 56667777666655 455555 56666666666666653
Q ss_pred ccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCC
Q 014575 84 LWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EIS 162 (422)
Q Consensus 84 l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~ 162 (422)
++..+..+++|+.+....+.+.+ ..+..++.+++|++|++++|...+.+|..+.++++|+.|++++|...+.+| .++
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccC--cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 34445555555555322222211 222235555556666666655555555555555666666666655555555 355
Q ss_pred CCCCcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCccc
Q 014575 163 SAGNIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLP 205 (422)
Q Consensus 163 ~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp 205 (422)
.+++|++|+|++|.++ .+|..++.+++|+.|++++|...+.+|
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 5555555555555555 455555555555555555554444444
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=3.7e-23 Score=208.95 Aligned_cols=238 Identities=17% Similarity=0.127 Sum_probs=137.5
Q ss_pred eeeChhhhhCCCCCceEEEecCCCCCCCceeEEc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCccc
Q 014575 7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSY-LVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQ 82 (422)
Q Consensus 7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~l-p~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~ 82 (422)
..+.+.+|.+|++|++|++++|...+ .+ +..+.. ++|++|++++|.+..+ |..| .+++|++|++++|+++
T Consensus 43 ~~~~~~~~~~l~~L~~L~L~~n~~~~------~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 116 (455)
T 3v47_A 43 AELNETSFSRLQDLQFLKVEQQTPGL------VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116 (455)
T ss_dssp CEECTTTTSSCTTCCEEECCCCSTTC------EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB
T ss_pred CcCChhHhccCccccEEECcCCcccc------eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC
Confidence 34567888899999999998876421 13 345555 8888888888888776 5555 7888888888888887
Q ss_pred cc-ccc--ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCC-------------------
Q 014575 83 QL-WDD--VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR------------------- 140 (422)
Q Consensus 83 ~l-~~~--~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~------------------- 140 (422)
+. +.. +..+++|+++....+.+.... +..+++.+++|++|++++|...+..|..+..
T Consensus 117 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp THHHHSSTTTTCTTCCEEECCSSBCCSCC-CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred ccccCcccccCcccCCEEECCCCccCccC-cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 62 222 566777777644433333221 2223667778888888887665555543332
Q ss_pred ---------------CCCCCEEEeeCCCCCCCCcC--------------------------------------CC--CCC
Q 014575 141 ---------------LEFLKELDLWGCSKLKTLPE--------------------------------------IS--SAG 165 (422)
Q Consensus 141 ---------------l~~L~~L~Ls~~~~l~~~p~--------------------------------------~~--~l~ 165 (422)
+++|++|++++|...+..|. +. ..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence 24566666666543221110 00 113
Q ss_pred CcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575 166 NIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE 244 (422)
Q Consensus 166 ~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~ 244 (422)
+|+.|++++|.++.+ |..++.+++|+.|++++|...+..|..+..+++|+.|++++|...+..|..++.+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 455555555555432 3345555555555555544444444455555555555555554433344455555555555555
Q ss_pred Ccccccc
Q 014575 245 GTAIREV 251 (422)
Q Consensus 245 ~n~l~~l 251 (422)
+|.++.+
T Consensus 356 ~N~l~~~ 362 (455)
T 3v47_A 356 YNHIRAL 362 (455)
T ss_dssp SSCCCEE
T ss_pred CCccccc
Confidence 5555444
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.7e-22 Score=204.51 Aligned_cols=222 Identities=18% Similarity=0.170 Sum_probs=161.0
Q ss_pred CCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCcccccccc-ccCCcch
Q 014575 19 KLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWDD-VEHNGKL 94 (422)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L 94 (422)
+|+.|+|++|.+. ...+..+.. ++|++|++++|.+..++. .| .+++|++|+|++|+|+.++.+ +..+++|
T Consensus 76 ~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 76 NTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 5666666665432 113444444 666666666666666553 23 566666666666666665543 4445555
Q ss_pred HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccc-cCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEee
Q 014575 95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA-GIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN 173 (422)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~ 173 (422)
++|....+.+.. ..+..+..+++|++|++++|..++.+|. .+.++++|+.|++++|. +..+|.+..+++|+.|+|+
T Consensus 150 ~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 150 RELWLRNNPIES--IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMS 226 (452)
T ss_dssp CEEECCSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECT
T ss_pred CEEECCCCCcce--eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECc
Confidence 555332222221 1122377889999999999888888875 47789999999999986 5567889999999999999
Q ss_pred CccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 174 GTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 174 ~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
+|.++.+ |..+..+++|+.|++++|...+..|..+..+++|+.|+|++|+..+..+..+..+++|+.|++++|.+.
T Consensus 227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9999977 567899999999999998777777888899999999999998666555566788999999999999875
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=203.33 Aligned_cols=223 Identities=16% Similarity=0.184 Sum_probs=158.0
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccc-cccCCcc
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWD-DVEHNGK 93 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~ 93 (422)
++|+.|+|++|.+. ...+..+.. ++|++|++++|.+..++.. | .+++|++|+|++|+|+.++. .+..+++
T Consensus 64 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCCC------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCcCC------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 34566666655432 112233444 5566666666665555532 3 45566666666666655544 2444555
Q ss_pred hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccc-cCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEe
Q 014575 94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA-GIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 172 (422)
Q Consensus 94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L 172 (422)
|++|....+.+.. ..+..+..+++|++|+|++|..++.++. .+.++++|+.|++++|. +..+|.+..+++|+.|+|
T Consensus 138 L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 138 LKELWLRNNPIES--IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDL 214 (440)
T ss_dssp CCEEECCSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEEC
T ss_pred CceeeCCCCcccc--cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEEC
Confidence 5544222222211 1122377889999999999888887775 57789999999999986 567888999999999999
Q ss_pred eCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 173 NGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 173 ~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
++|.|+.+ |..+..+++|+.|+|++|...+..|..+..+++|+.|+|++|+..+..+..+..+++|+.|++++|.+.
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999977 668899999999999998777667778899999999999998766655667788999999999999875
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=6.5e-23 Score=210.83 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=62.3
Q ss_pred eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccc-
Q 014575 7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQL- 84 (422)
Q Consensus 7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l- 84 (422)
..+.+.+|.++++|++|++++|.+.. ..|..+.. ++|++|++++|.++.+|.. .+++|++|++++|.+.++
T Consensus 34 ~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 34 SELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp CCCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCC
T ss_pred cccChhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCcccccc
Confidence 34667788888888888888876431 24566666 8888888888888888877 788888888888888763
Q ss_pred -cccccCCcchHHH
Q 014575 85 -WDDVEHNGKLKQI 97 (422)
Q Consensus 85 -~~~~~~l~~L~~l 97 (422)
+..+..+++|+++
T Consensus 107 ~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 107 ICKEFGNMSQLKFL 120 (520)
T ss_dssp CCGGGGGCTTCCEE
T ss_pred chhhhccCCcceEE
Confidence 4566666666655
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=206.14 Aligned_cols=241 Identities=20% Similarity=0.122 Sum_probs=167.5
Q ss_pred eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccc
Q 014575 7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQ 83 (422)
Q Consensus 7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~ 83 (422)
..+.+.+|.++++|+.|+|++|.+. -..|..+.. ++|++|++++|.+..+|... .+++|++|+|++|++..
T Consensus 45 ~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 118 (477)
T 2id5_A 45 KTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118 (477)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE
T ss_pred ceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc
Confidence 3566788999999999999887643 124666666 88888888888888888753 77888888888888877
Q ss_pred ccc-cccCCcchHHHHHhhccCCCC----------------------CCcchhhhcCCCCcEEeccCCCCCccccccCCC
Q 014575 84 LWD-DVEHNGKLKQIISRACNFFTK----------------------SPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR 140 (422)
Q Consensus 84 l~~-~~~~l~~L~~l~~~~~~~~~~----------------------~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~ 140 (422)
+.+ .+..+++|+.|....+.+... ...+..+..+++|+.|+|++|...+..+..+..
T Consensus 119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~ 198 (477)
T 2id5_A 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198 (477)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS
T ss_pred CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhccc
Confidence 543 455666666662222211111 011122455556666666665544444445666
Q ss_pred CCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEE
Q 014575 141 LEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218 (422)
Q Consensus 141 l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 218 (422)
+++|+.|++++|.....+| ......+|+.|+|++|.++.+|. .+..+++|+.|+|++|...+..+..+..+++|+.|+
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEE
Confidence 6777777777766666555 33444578888888888888884 578888888888888765555555678888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 219 LRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 219 Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
|++|...+..|..+..+++|+.|++++|.++.+|.
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 88887777778888888888888888888887764
No 11
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.1e-22 Score=211.52 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=67.0
Q ss_pred eeeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccc
Q 014575 6 EIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQL 84 (422)
Q Consensus 6 ~~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l 84 (422)
-..+.+.+|.++++|++|++++|.+.. ..|..+.. ++|++|++++|.+..+|.. .+++|++|++++|++.++
T Consensus 64 i~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l 136 (562)
T 3a79_B 64 ISELRMPDISFLSELRVLRLSHNRIRS------LDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVL 136 (562)
T ss_dssp CCCCCGGGTTTCTTCCEEECCSCCCCE------ECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBC
T ss_pred ccccChhhhccCCCccEEECCCCCCCc------CCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCcccc
Confidence 345667889999999999999887531 24566766 8899999999999999888 888999999999998876
Q ss_pred c--ccccCCcchHHH
Q 014575 85 W--DDVEHNGKLKQI 97 (422)
Q Consensus 85 ~--~~~~~l~~L~~l 97 (422)
+ ..+..+++|+++
T Consensus 137 ~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 137 PVCKEFGNLTKLTFL 151 (562)
T ss_dssp CCCGGGGGCTTCCEE
T ss_pred CchHhhcccCcccEE
Confidence 4 466777777766
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7e-22 Score=191.51 Aligned_cols=222 Identities=14% Similarity=0.137 Sum_probs=168.3
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCccccccccccCCcch
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKL 94 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L 94 (422)
++|+.|++++|.+... .+..+.. ++|++|++++|.+..+ |..| .+++|++|++++|.++.++..+. ++|
T Consensus 52 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKITEI------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp TTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCeEEECCCCcCCEe------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 4788888888764321 2234555 7888888888888777 5555 77888888888888887765443 455
Q ss_pred HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCC--ccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEE
Q 014575 95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSL--RILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMY 171 (422)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~ 171 (422)
+++....+.+. ...+..+..+++|++|++++|... +..+..+.++++|+.|++++|... .+| .+. ++|++|+
T Consensus 124 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 124 QELRVHENEIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH 198 (330)
T ss_dssp CEEECCSSCCC--BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred cEEECCCCccc--ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence 55532222222 223344788999999999998764 356777888999999999998754 455 343 6999999
Q ss_pred eeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccc
Q 014575 172 LNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 172 L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 250 (422)
+++|.++.+ |..+..+++|+.|++++|...+..|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.++.
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCc
Confidence 999999977 568899999999999997766655667889999999999997 456899999999999999999999998
Q ss_pred ccc
Q 014575 251 VYF 253 (422)
Q Consensus 251 lp~ 253 (422)
+|.
T Consensus 278 ~~~ 280 (330)
T 1xku_A 278 IGS 280 (330)
T ss_dssp CCT
T ss_pred cCh
Confidence 764
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.4e-22 Score=204.46 Aligned_cols=225 Identities=14% Similarity=0.123 Sum_probs=162.4
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCcccccccc-ccCCcc
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQLWDD-VEHNGK 93 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~ 93 (422)
++|+.|++++|.+.. ..+..+.. ++|++|++++|.+..+ |..| .+++|++|+|++|+++.++.+ +..+++
T Consensus 32 ~~l~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNRIKT------LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSCCCE------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCCccce------ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 589999999987532 13556766 9999999999999988 5556 889999999999999998765 477888
Q ss_pred hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEe
Q 014575 94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYL 172 (422)
Q Consensus 94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L 172 (422)
|++|....+.+... .+..+..+++|++|++++|...+..|..+.++++|+.|++++|......+ .+..+++|+.|+|
T Consensus 106 L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 106 LTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp CCEEECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCEEECCCCccccC--ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 88884444433222 23347889999999999998777777788899999999999987554444 4888899999999
Q ss_pred eCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCC-cccCCCCCCCEEeccCccccc
Q 014575 173 NGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLP-DELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 173 ~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~ 250 (422)
++|.++.++. .+..+++|+.|++++|..++.+|..+....+|+.|++++|.. ..+| ..+..+++|+.|++++|.++.
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCc
Confidence 9999987764 677888888888888776666665544444555555555432 2333 234444444444444444443
Q ss_pred c
Q 014575 251 V 251 (422)
Q Consensus 251 l 251 (422)
+
T Consensus 263 ~ 263 (477)
T 2id5_A 263 I 263 (477)
T ss_dssp E
T ss_pred c
Confidence 3
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2e-22 Score=203.50 Aligned_cols=240 Identities=14% Similarity=0.075 Sum_probs=168.8
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCC-CCCC--C-CCCCceEEEccCCccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKS-LPSN--I-HPEKLVSIEMPHGNIQ 82 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~-lP~~--~-~~~~L~~L~L~~~~l~ 82 (422)
.+.+.+|.++++|++|++++|.+. ...|..+.. ++|++|++++|.+.. +|.. + .+++|++|+|++|.+.
T Consensus 69 ~i~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 69 VIRNNTFRGLSSLIILKLDYNQFL------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTCTTC------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred eECcccccccccCCEEeCCCCccC------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence 466788999999999999988643 224666776 888888888888775 2332 4 6788888888888888
Q ss_pred ccccc--ccCCcchHHHHHhhccCCCCCC--cchh------------------------------hhcCCCCcEEeccCC
Q 014575 83 QLWDD--VEHNGKLKQIISRACNFFTKSP--NHSL------------------------------TLHLDKLVNLNLNNC 128 (422)
Q Consensus 83 ~l~~~--~~~l~~L~~l~~~~~~~~~~~~--~~~l------------------------------i~~l~~L~~L~L~~~ 128 (422)
.+.+. +..+++|+++....+.+..... ...+ +..+++|++|++++|
T Consensus 143 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence 76433 5667777776333332222111 0000 123467888888887
Q ss_pred CCCccccccCC---------------------------------------CCCCCCEEEeeCCCCCCCCc-CCCCCCCcC
Q 014575 129 KSLRILPAGIF---------------------------------------RLEFLKELDLWGCSKLKTLP-EISSAGNIE 168 (422)
Q Consensus 129 ~~l~~lp~~i~---------------------------------------~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~ 168 (422)
...+..|..+. ..++|+.|++++|...+..| .++.+++|+
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 302 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCC
Confidence 65544333221 12578888888887766666 477888888
Q ss_pred EEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575 169 VMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA 247 (422)
Q Consensus 169 ~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~ 247 (422)
.|+|++|.++.+ |..++.+++|+.|++++|...+..|..+..+++|+.|+|++|...+..|..+..+++|++|++++|.
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 888888888866 4577888888888888876655557778888888888888887766678888888888888888888
Q ss_pred cccccc
Q 014575 248 IREVYF 253 (422)
Q Consensus 248 l~~lp~ 253 (422)
++.+|.
T Consensus 383 l~~~~~ 388 (455)
T 3v47_A 383 LKSVPD 388 (455)
T ss_dssp CSCCCT
T ss_pred cccCCH
Confidence 887764
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=8.7e-23 Score=195.67 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=180.4
Q ss_pred CCCceEEEecCCCCCCCceeEEccCC-CCC-CCeeEEEecCCCCCCC---CCCC-CCCCceEEEccCCccccccccccCC
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVG-PGF-AEVRYLHWYGYPLKSL---PSNI-HPEKLVSIEMPHGNIQQLWDDVEHN 91 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~-l~~-~~Lr~L~l~~~~l~~l---P~~~-~~~~L~~L~L~~~~l~~l~~~~~~l 91 (422)
++|+.|++++|.+. .+|.+ +.. ++|++|++++|.+..+ |..+ .+++|++|++++|.+..++..+..+
T Consensus 28 ~~l~~L~L~~n~l~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNKLQ-------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCCCccC-------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 57889999887643 25554 445 8899999999888765 3333 6788999999999988887777788
Q ss_pred cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC-CCc-CCCCCCCcCE
Q 014575 92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK-TLP-EISSAGNIEV 169 (422)
Q Consensus 92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~ 169 (422)
++|+++....+.+...... ..+..+++|++|++++|...+..|..+.++++|++|++++|.... .+| .+..+++|++
T Consensus 101 ~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp TTCCEEECTTSEEESSTTT-TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCEEECCCCcccccccc-hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 8888774443333332221 236788999999999998777788888899999999999997665 355 5889999999
Q ss_pred EEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCC-CCCEEeccCcc
Q 014575 170 MYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE-ALDSLIAEGTA 247 (422)
Q Consensus 170 L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~-~L~~L~l~~n~ 247 (422)
|+|++|.++.+ |..+..+++|+.|++++|...+..+..+..+++|+.|++++|...+..|..+..++ +|+.|++++|.
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999977 66789999999999999776555555788999999999999998888898898884 89999999999
Q ss_pred cccc
Q 014575 248 IREV 251 (422)
Q Consensus 248 l~~l 251 (422)
++..
T Consensus 260 ~~~~ 263 (306)
T 2z66_A 260 FACT 263 (306)
T ss_dssp EECS
T ss_pred eecc
Confidence 8743
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.3e-23 Score=202.65 Aligned_cols=204 Identities=16% Similarity=0.129 Sum_probs=157.6
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecC-CCCC-CCCCCC-CCCCceEEEccCCccccccccccCCcc
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYG-YPLK-SLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGK 93 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~-~~l~-~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~ 93 (422)
.+++.|+++++.+.+. ..+|..+.. ++|++|++++ +.+. .+|..+ .+++|++|++++|.+.+..
T Consensus 50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-------- 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-------- 117 (313)
T ss_dssp CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC--------
T ss_pred ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC--------
Confidence 3556666666554321 124444444 5666666663 4443 455555 5566666666666655321
Q ss_pred hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCC-CcCEEE
Q 014575 94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAG-NIEVMY 171 (422)
Q Consensus 94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~-~L~~L~ 171 (422)
+..+..+++|++|+|++|...+.+|..+.++++|++|++++|...+.+| .+..++ +|+.|+
T Consensus 118 -----------------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 118 -----------------PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp -----------------CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred -----------------CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 2227788999999999998888999999999999999999998776777 688887 999999
Q ss_pred eeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc-
Q 014575 172 LNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR- 249 (422)
Q Consensus 172 L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~- 249 (422)
|++|.++ .+|..+..++ |+.|++++|...+..|..+..+++|+.|++++|...+.+|. +..+++|++|++++|.++
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 9999998 7899999987 99999999988888999999999999999999887766666 788999999999999998
Q ss_pred ccc
Q 014575 250 EVY 252 (422)
Q Consensus 250 ~lp 252 (422)
.+|
T Consensus 259 ~~p 261 (313)
T 1ogq_A 259 TLP 261 (313)
T ss_dssp CCC
T ss_pred cCC
Confidence 444
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=3.6e-22 Score=197.98 Aligned_cols=232 Identities=12% Similarity=0.076 Sum_probs=157.1
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQL 84 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l 84 (422)
.+++..|.++++|+.|++++|.+. -..+..+.. ++|++|++++|.+..+|+. + .+++|++|++++|.++.+
T Consensus 59 ~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 132 (390)
T 3o6n_A 59 KLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132 (390)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred hCChhHhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC
Confidence 467778889999999999887643 113345666 8899999998888888765 3 788899999999988888
Q ss_pred cccc-cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCC--------
Q 014575 85 WDDV-EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL-------- 155 (422)
Q Consensus 85 ~~~~-~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l-------- 155 (422)
+.++ ..+++|+++....+.+... .+..++.+++|++|++++|..... + +..+++|+.|++++|...
T Consensus 133 ~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 133 PRGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBC--CTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred CHHHhcCCCCCcEEECCCCccCcc--ChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCCcc
Confidence 7764 6777777774433333222 223366778888888888754432 2 223444444444443211
Q ss_pred ----------CCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCC
Q 014575 156 ----------KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSL 225 (422)
Q Consensus 156 ----------~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l 225 (422)
..+|. ...++|+.|++++|.++.+ +.+..+++|++|++++|...+..|..+..+++|+.|++++| .+
T Consensus 208 ~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 284 (390)
T 3o6n_A 208 EELDASHNSINVVRG-PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RL 284 (390)
T ss_dssp SEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CC
T ss_pred eEEECCCCeeeeccc-cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cC
Confidence 11221 1234677778887777765 36777888888888887666666777888888888888875 44
Q ss_pred CCCCcccCCCCCCCEEeccCcccccccc
Q 014575 226 KSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 226 ~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
..+|..+..+++|+.|++++|.++.+|.
T Consensus 285 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 312 (390)
T 3o6n_A 285 VALNLYGQPIPTLKVLDLSHNHLLHVER 312 (390)
T ss_dssp CEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred cccCcccCCCCCCCEEECCCCcceecCc
Confidence 5566666777888888888888877764
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=4.9e-22 Score=208.02 Aligned_cols=239 Identities=18% Similarity=0.157 Sum_probs=155.0
Q ss_pred eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCcccc
Q 014575 7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQ 83 (422)
Q Consensus 7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~ 83 (422)
..+.+.+|.++++|++|++++|.+. ...|..+.. ++|++|++++|.+..+ |..| .+++|++|++++|.++.
T Consensus 46 ~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 46 PTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp SEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred CcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 3456778888888888888887642 124566666 7788888888877766 3344 67778888888877777
Q ss_pred c-cccccCCcchHHHHHhhccCCCCCCc----------------------chhhhcCCCCc--EEeccCCCCCccccccC
Q 014575 84 L-WDDVEHNGKLKQIISRACNFFTKSPN----------------------HSLTLHLDKLV--NLNLNNCKSLRILPAGI 138 (422)
Q Consensus 84 l-~~~~~~l~~L~~l~~~~~~~~~~~~~----------------------~~li~~l~~L~--~L~L~~~~~l~~lp~~i 138 (422)
+ +..+..+++|+++....+.+...... +..++.+++|+ .|++++|...+..|..+
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 5 34556666666663333322221111 11244455555 45555554333333221
Q ss_pred CCCC----------------------------------------------------CCCEEEeeCCCCCCCCc-CCCCCC
Q 014575 139 FRLE----------------------------------------------------FLKELDLWGCSKLKTLP-EISSAG 165 (422)
Q Consensus 139 ~~l~----------------------------------------------------~L~~L~Ls~~~~l~~~p-~~~~l~ 165 (422)
... +|+.|++++|......+ .+..++
T Consensus 200 -~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 200 -DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp -TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred -hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 111 34444444444333333 277788
Q ss_pred CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcc-cCCCCCCCEEecc
Q 014575 166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDE-LGNLEALDSLIAE 244 (422)
Q Consensus 166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~-~~~l~~L~~L~l~ 244 (422)
+|++|++++|.++++|..++.+++|++|++++|...+..|..+..+++|+.|++++|...+.+|.. ++.+++|+.|+++
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 889999998888888888888888999999887766666777888888888888888777666654 6777888888888
Q ss_pred Cccccccc
Q 014575 245 GTAIREVY 252 (422)
Q Consensus 245 ~n~l~~lp 252 (422)
+|.++.++
T Consensus 359 ~n~l~~~~ 366 (606)
T 3t6q_A 359 HDDIETSD 366 (606)
T ss_dssp SSCCCEEE
T ss_pred CCcccccc
Confidence 88776653
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=4.3e-23 Score=217.81 Aligned_cols=212 Identities=12% Similarity=0.070 Sum_probs=140.9
Q ss_pred ccCCCCC-CCeeEEEecCCCCCC------------------CCCCCC---CCCceEEEccCCcccc-ccccccCCcchHH
Q 014575 40 YLVGPGF-AEVRYLHWYGYPLKS------------------LPSNIH---PEKLVSIEMPHGNIQQ-LWDDVEHNGKLKQ 96 (422)
Q Consensus 40 lp~~l~~-~~Lr~L~l~~~~l~~------------------lP~~~~---~~~L~~L~L~~~~l~~-l~~~~~~l~~L~~ 96 (422)
+|..+.. ++|++|++++|.+.. +|..+. +++|++|++++|.+.+ ++..+..+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 5666655 777777777777776 777654 6777777777777654 4556666777766
Q ss_pred HHHhhccCCCCCCcchhhhcC------CCCcEEeccCCCCCccccc--cCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcC
Q 014575 97 IISRACNFFTKSPNHSLTLHL------DKLVNLNLNNCKSLRILPA--GIFRLEFLKELDLWGCSKLKTLPEISSAGNIE 168 (422)
Q Consensus 97 l~~~~~~~~~~~~~~~li~~l------~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~ 168 (422)
+....+........|..++.+ ++|++|++++|... .+|. .+.++++|++|++++|...+.+|.++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 633332211110223334444 77777777777544 6776 67777777777777776655666666777777
Q ss_pred EEEeeCccCcccCccccCCCC-CCEEecCCCCCCCcccccccCCC--CCcEEEccCCCCCCCCCcccC-------CCCCC
Q 014575 169 VMYLNGTAIEELPSSIECLSR-LSALYLDNCKRLKSLPSSLCKLN--SLNFIYLRWCSSLKSLPDELG-------NLEAL 238 (422)
Q Consensus 169 ~L~L~~n~i~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~Ls~c~~l~~lp~~~~-------~l~~L 238 (422)
+|+|++|.++.+|..+..+++ |+.|++++|. +..+|..+..++ +|+.|++++|...+.+|..+. .+++|
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 777777777777777777777 7777777755 336777665544 677777777777776776666 66677
Q ss_pred CEEeccCcccccccc
Q 014575 239 DSLIAEGTAIREVYF 253 (422)
Q Consensus 239 ~~L~l~~n~l~~lp~ 253 (422)
+.|++++|.++.+|.
T Consensus 436 ~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 436 SSINLSNNQISKFPK 450 (636)
T ss_dssp EEEECCSSCCCSCCT
T ss_pred CEEECcCCccCcCCH
Confidence 777777777776664
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.3e-22 Score=194.06 Aligned_cols=231 Identities=19% Similarity=0.159 Sum_probs=181.8
Q ss_pred eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccc
Q 014575 7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLW 85 (422)
Q Consensus 7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~ 85 (422)
..+.+.+|.++++|++|++++|.+. ...|..+.. ++|++|++++|.+..+|..+. ++|++|++++|.+..++
T Consensus 67 ~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~ 139 (332)
T 2ft3_A 67 SELRKDDFKGLQHLYALVLVNNKIS------KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVP 139 (332)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCC------EECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCC
T ss_pred CccCHhHhhCCCCCcEEECCCCccC------ccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccC
Confidence 3566788999999999999988643 124666776 899999999999999998775 79999999999999887
Q ss_pred cc-ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCC
Q 014575 86 DD-VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISS 163 (422)
Q Consensus 86 ~~-~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~ 163 (422)
.. +..+++|+.+....+.+......+..+..+ +|++|++++|. +..+|..+. ++|+.|++++|......+ .+..
T Consensus 140 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTT
T ss_pred HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcC
Confidence 64 677888887744443332222333335566 89999999985 455776553 799999999998766665 5899
Q ss_pred CCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCC------CC
Q 014575 164 AGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGN------LE 236 (422)
Q Consensus 164 l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~------l~ 236 (422)
+++|+.|+|++|.++.++. .+..+++|+.|++++| .+..+|..+..+++|+.|++++|+..+.-+..+.. ..
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 9999999999999998875 7899999999999996 46699999999999999999997655444444443 36
Q ss_pred CCCEEeccCcccc
Q 014575 237 ALDSLIAEGTAIR 249 (422)
Q Consensus 237 ~L~~L~l~~n~l~ 249 (422)
+|+.|++++|.+.
T Consensus 295 ~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 295 YYNGISLFNNPVP 307 (332)
T ss_dssp CBSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 7899999999887
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=4.1e-22 Score=208.59 Aligned_cols=236 Identities=15% Similarity=0.127 Sum_probs=153.8
Q ss_pred eChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccc-cc
Q 014575 9 LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQ-QL 84 (422)
Q Consensus 9 l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~-~l 84 (422)
+.+.+|.++++|+.|++++|.+. .+|.++.. ++|++|++++|.+..++. .+ .+++|++|++++|.+. .+
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred cCHHHhccccCCCEEeccCCccC-------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 44556777777777777776532 25666655 677777777777766543 33 5667777777777665 23
Q ss_pred ccc-ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-C-C
Q 014575 85 WDD-VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-E-I 161 (422)
Q Consensus 85 ~~~-~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~-~ 161 (422)
+.+ +..+++|+++....+.+......+..++.+++|++|++++|...+..|..+.++++|+.|++++|......| . +
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 332 455666665533333332222112336677777777777776666666667777778888887776655544 2 6
Q ss_pred CCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCc---ccccccCCCCCcEEEccCCCCCCCCCcccCCCCC
Q 014575 162 SSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKS---LPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA 237 (422)
Q Consensus 162 ~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~---lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~ 237 (422)
..+++|+.|++++|.++.. |..++.+++|++|++++|...+. .+..+..+++|+.|++++|...+..|..++.+++
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence 7777788888888777744 45667777888888887665442 2245677778888888877766666777777788
Q ss_pred CCEEeccCcccccc
Q 014575 238 LDSLIAEGTAIREV 251 (422)
Q Consensus 238 L~~L~l~~n~l~~l 251 (422)
|+.|++++|.++..
T Consensus 502 L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 502 MNHVDLSHNRLTSS 515 (606)
T ss_dssp CCEEECCSSCCCGG
T ss_pred CCEEECCCCccCcC
Confidence 88888888877654
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.6e-22 Score=213.37 Aligned_cols=228 Identities=16% Similarity=0.178 Sum_probs=151.6
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCC-ceEEEccCCcccccccccc
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEK-LVSIEMPHGNIQQLWDDVE 89 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~-L~~L~L~~~~l~~l~~~~~ 89 (422)
+|.+|++|+.|++++|.+.+ .+| .+.. ++|++|++++|.+..+|..+ .+++ |++|++++|.++.++..+.
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEG------KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEE------ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred hhccCCCCCEEeCcCCcCcc------chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 67777777777777765432 355 4444 77777777777777777766 5666 7777777777776665544
Q ss_pred CCc--chHHHHHhhccCCCCCCcchhhh-------cCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCc
Q 014575 90 HNG--KLKQIISRACNFFTKSPNHSLTL-------HLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLP 159 (422)
Q Consensus 90 ~l~--~L~~l~~~~~~~~~~~~~~~li~-------~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p 159 (422)
.+. +|+.+....+.+.+. .+..+. .+++|++|+|++|... .+|..+. .+++|+.|+|++|... .+|
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSV--DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTT--TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hcccCccCEEECcCCcCCCc--chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 433 555553322222211 111122 5567888888887544 5665443 4778888888887655 555
Q ss_pred C--CCC-------CCCcCEEEeeCccCcccCcccc--CCCCCCEEecCCCCCCCcccccccCCCCCcEEEc------cCC
Q 014575 160 E--ISS-------AGNIEVMYLNGTAIEELPSSIE--CLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYL------RWC 222 (422)
Q Consensus 160 ~--~~~-------l~~L~~L~L~~n~i~~lp~~i~--~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L------s~c 222 (422)
. +.. +++|+.|+|++|.++.+|..+. .+++|+.|+|++|+..+ +|..+..+++|+.|+| ++|
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 2 222 2278888888888888887776 78888888888865554 7888888888888888 445
Q ss_pred CCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 223 SSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 223 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+..+.+|..++.+++|+.|++++|.+..+|
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip 582 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVN 582 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred cccccChHHHhcCCCCCEEECCCCcCCccC
Confidence 567778888888888888888888776554
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=2.2e-21 Score=196.35 Aligned_cols=210 Identities=18% Similarity=0.161 Sum_probs=176.9
Q ss_pred ccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCcccccc-ccccCCcchHHHHHhhccCCCCCCcchhhhc
Q 014575 40 YLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLW-DDVEHNGKLKQIISRACNFFTKSPNHSLTLH 116 (422)
Q Consensus 40 lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~ 116 (422)
+|.++. ++|++|++++|.+..++. .| .+++|++|+|++|+|..+. ..+..+++|++|....+.+... .+..+..
T Consensus 69 iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~ 145 (452)
T 3zyi_A 69 VPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEY 145 (452)
T ss_dssp CCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC--CTTTSSS
T ss_pred cCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc--Chhhhcc
Confidence 554433 789999999999998855 45 8999999999999999876 4567788888885444443322 2334778
Q ss_pred CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEe
Q 014575 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALY 194 (422)
Q Consensus 117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~ 194 (422)
+++|++|+|++|......+..+.++++|+.|++++|..++.++ .+..+++|++|+|++|.++.+| .+..+++|+.|+
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELE 224 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEE
Confidence 9999999999997655555578899999999999998888887 4889999999999999999997 588999999999
Q ss_pred cCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 195 LDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 195 L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
|++|...+..|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.++.+|.
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 99988777778899999999999999998888888899999999999999999987764
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=3.1e-21 Score=183.01 Aligned_cols=137 Identities=22% Similarity=0.249 Sum_probs=115.3
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCc-cccCCCCCC
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPS-SIECLSRLS 191 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~ 191 (422)
+..+++|++|++++|...+..|..+.++++|++|++++|......+. +..+++|++|+|++|.++.+|. .+..+++|+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 66788999999999987777677788899999999999876655443 8889999999999999998886 488899999
Q ss_pred EEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccc
Q 014575 192 ALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 192 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 250 (422)
.|++++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+..
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 99999987777778889999999999999976665555668889999999999998763
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.2e-21 Score=210.10 Aligned_cols=231 Identities=13% Similarity=0.104 Sum_probs=168.7
Q ss_pred hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCC-ceEEEccCCccccccccc
Q 014575 12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEK-LVSIEMPHGNIQQLWDDV 88 (422)
Q Consensus 12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~-L~~L~L~~~~l~~l~~~~ 88 (422)
.+|.+|++|+.|++++|.+. .+| .+.. ++|++|++++|.+..+|..+ .+++ |++|+|++|++..++..+
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred hhhhcCCCCCEEECCCCCcc-------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 48999999999999998753 366 6666 89999999999999999877 6777 999999999999887665
Q ss_pred cCCcc--hHHHHHhhccCCCCC-Ccchhhh--cCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCcC-C
Q 014575 89 EHNGK--LKQIISRACNFFTKS-PNHSLTL--HLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPE-I 161 (422)
Q Consensus 89 ~~l~~--L~~l~~~~~~~~~~~-~~~~li~--~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p~-~ 161 (422)
..+.. |+.+....+.+.+.. ..+.-++ .+++|+.|+|++|... .+|..+. .+++|+.|+|++|... .+|. +
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 55433 666633333332211 0110112 3447888888887544 6676554 6788888888887654 5552 2
Q ss_pred CC--------CCCcCEEEeeCccCcccCcccc--CCCCCCEEecCCCCCCCcccccccCCCCCcEEEccC------CCCC
Q 014575 162 SS--------AGNIEVMYLNGTAIEELPSSIE--CLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRW------CSSL 225 (422)
Q Consensus 162 ~~--------l~~L~~L~L~~n~i~~lp~~i~--~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~------c~~l 225 (422)
.. +++|+.|+|++|.|+.+|..+. .+++|+.|+|++|...+ +|..+..+++|+.|+|++ |...
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 22 2378888888888888888876 88888888888865444 788888888888888865 6667
Q ss_pred CCCCcccCCCCCCCEEeccCcccccccc
Q 014575 226 KSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 226 ~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
+.+|..+..+++|+.|++++|.+..+|.
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDIRKVDE 823 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred ccChHHHhcCCCCCEEECCCCCCCccCH
Confidence 7888888888888888888888877775
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.3e-21 Score=204.94 Aligned_cols=231 Identities=12% Similarity=0.086 Sum_probs=146.2
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCccccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQL 84 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l 84 (422)
.+++..|.++++|++|++++|.+.. ..|..+.. ++|++|++++|.+..+|+.. .+++|++|+|++|.|..+
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEE------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CcCHHHHccCCCCcEEECCCCCCCC------CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence 4777888889999999998876431 13345666 88888888888888887654 788888888888888888
Q ss_pred cccc-cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCC--------
Q 014575 85 WDDV-EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL-------- 155 (422)
Q Consensus 85 ~~~~-~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l-------- 155 (422)
+..+ ..+++|++|....+.+.. ..+..++.+++|++|+|++|...+. + +..+++|+.|++++|...
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred CHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCchh
Confidence 7764 677777777444333322 2223367778888888888754432 2 223344444444333211
Q ss_pred ----------CCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCC
Q 014575 156 ----------KTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSS 224 (422)
Q Consensus 156 ----------~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~ 224 (422)
..+| .+ .++|+.|+|++|.++.. ..++.+++|+.|+|++|...+..|..++.+++|+.|+|++|.
T Consensus 214 ~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~- 289 (597)
T 3oja_B 214 EELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR- 289 (597)
T ss_dssp SEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-
T ss_pred heeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-
Confidence 1111 11 13566666666666653 456666777777777766555556666667777777776643
Q ss_pred CCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 225 LKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 225 l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
+..+|..+..+++|+.|++++|.++.+|.
T Consensus 290 l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~ 318 (597)
T 3oja_B 290 LVALNLYGQPIPTLKVLDLSHNHLLHVER 318 (597)
T ss_dssp CCEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCcccccCCCCcEEECCCCCCCccCc
Confidence 34456656666677777777776666654
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.3e-21 Score=192.20 Aligned_cols=234 Identities=15% Similarity=0.094 Sum_probs=169.3
Q ss_pred eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccc
Q 014575 7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQ 83 (422)
Q Consensus 7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~ 83 (422)
..+.+.+|.++++|++|++++|.+... .|..+.. ++|++|++++|.+..+|... .+++|++|++++|++..
T Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 82 EEIDTYAFAYAHTIQKLYMGFNAIRYL------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred cccChhhccCCCCcCEEECCCCCCCcC------CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 346677999999999999999875432 3455666 99999999999999999874 78999999999999988
Q ss_pred ccc-cccCCcchHHHHHhhccCCCCC--Ccchh------------hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEE
Q 014575 84 LWD-DVEHNGKLKQIISRACNFFTKS--PNHSL------------TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELD 148 (422)
Q Consensus 84 l~~-~~~~l~~L~~l~~~~~~~~~~~--~~~~l------------i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 148 (422)
+.+ .+..+++|+++....+.+.... ..+.+ +...++|+.|++++|. +..+|.. ..++|+.|+
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~ 232 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGP--VNVELTILK 232 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECC--CCSSCCEEE
T ss_pred cChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCe-eeecccc--ccccccEEE
Confidence 754 4677788887743333332221 01100 1222345555555553 2333432 346788888
Q ss_pred eeCCCCCCCCcCCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575 149 LWGCSKLKTLPEISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS 227 (422)
Q Consensus 149 Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~ 227 (422)
+++|.. ...+.+..+++|++|+|++|.++.+ |..+..+++|+.|++++| .+..+|..+..+++|+.|++++| .+..
T Consensus 233 l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 233 LQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp CCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred CCCCCC-cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-ccee
Confidence 888764 4457788888888888888888865 677888888888888885 45667777778888888888886 4557
Q ss_pred CCcccCCCCCCCEEeccCccccccc
Q 014575 228 LPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 228 lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+|..+..+++|+.|++++|.++.+|
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred cCccccccCcCCEEECCCCccceeC
Confidence 7777777888888888888887765
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.1e-21 Score=210.25 Aligned_cols=218 Identities=11% Similarity=0.051 Sum_probs=164.7
Q ss_pred hhCCCCCceEEEecCCCCCCCceeEEccC--CCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccccccccc
Q 014575 14 FTKMCKLRFLKFYNSKDDGENKCKVSYLV--GPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVE 89 (422)
Q Consensus 14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~--~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~ 89 (422)
|..+++|+.|++++|.+. .+|. .+.. ++|++|++++|.+..+| .+ .+++|++|+|++|.+..++..+.
T Consensus 544 ~~~l~~L~~L~Ls~N~L~-------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~ 615 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLE-------EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFC 615 (876)
T ss_dssp TTTTTTCCEEECCSSCCC-------BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSC
T ss_pred ccccCCccEEEeeCCcCC-------ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHh
Confidence 344559999999988753 3676 6666 88999999999988888 55 78899999999999988887787
Q ss_pred CCcc-hHHHHHhhccCCCCCCcchhhhcCC--CCcEEeccCCCCCccccc---cCC--CCCCCCEEEeeCCCCCCCCc-C
Q 014575 90 HNGK-LKQIISRACNFFTKSPNHSLTLHLD--KLVNLNLNNCKSLRILPA---GIF--RLEFLKELDLWGCSKLKTLP-E 160 (422)
Q Consensus 90 ~l~~-L~~l~~~~~~~~~~~~~~~li~~l~--~L~~L~L~~~~~l~~lp~---~i~--~l~~L~~L~Ls~~~~l~~~p-~ 160 (422)
.+++ |+.|....+.+. ..+..+..++ +|+.|+|++|...+.+|. .+. .+++|+.|+|++|... .+| .
T Consensus 616 ~l~~~L~~L~Ls~N~L~---~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~ 691 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNKLK---YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTE 691 (876)
T ss_dssp EECTTCCEEECCSSCCC---SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHH
T ss_pred hccccCCEEECcCCCCC---cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHH
Confidence 7877 887744444333 2233344444 489999999887766553 222 3458999999998755 566 3
Q ss_pred -CCCCCCcCEEEeeCccCcccCccccCCC--------CCCEEecCCCCCCCccccccc--CCCCCcEEEccCCCCCCCCC
Q 014575 161 -ISSAGNIEVMYLNGTAIEELPSSIECLS--------RLSALYLDNCKRLKSLPSSLC--KLNSLNFIYLRWCSSLKSLP 229 (422)
Q Consensus 161 -~~~l~~L~~L~L~~n~i~~lp~~i~~l~--------~L~~L~L~~~~~l~~lp~~l~--~l~~L~~L~Ls~c~~l~~lp 229 (422)
+..+++|+.|+|++|.|+.+|..+.... +|+.|+|++|+ +..+|..+. .+++|+.|+|++|...+ +|
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence 4477889999999999998887664433 89999999864 458888887 88999999999876655 88
Q ss_pred cccCCCCCCCEEeccC
Q 014575 230 DELGNLEALDSLIAEG 245 (422)
Q Consensus 230 ~~~~~l~~L~~L~l~~ 245 (422)
..+..+++|+.|++++
T Consensus 770 ~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CGGGGCTTCCEEECCC
T ss_pred hhhhcCCCCCEEECCC
Confidence 8888899999999876
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3e-21 Score=194.60 Aligned_cols=210 Identities=17% Similarity=0.173 Sum_probs=177.3
Q ss_pred ccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCcccccc-ccccCCcchHHHHHhhccCCCCCCcchhhhc
Q 014575 40 YLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLW-DDVEHNGKLKQIISRACNFFTKSPNHSLTLH 116 (422)
Q Consensus 40 lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~ 116 (422)
+|.++. .++++|++++|.+..++. .| .+++|++|+|++|.|..+. ..+..+++|++|....+.+.... +..+..
T Consensus 58 iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~ 134 (440)
T 3zyj_A 58 VPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--NGAFVY 134 (440)
T ss_dssp CCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCS
T ss_pred CCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC--HhHhhc
Confidence 555444 889999999999999875 44 8899999999999999876 45677888888854444443322 234788
Q ss_pred CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEe
Q 014575 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALY 194 (422)
Q Consensus 117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~ 194 (422)
+++|++|+|++|......+..+.++++|+.|++++|..++.++ .+..+++|++|+|++|.++.+|. +..+++|+.|+
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 213 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELD 213 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEE
Confidence 9999999999997665555578899999999999988888877 48899999999999999999984 88999999999
Q ss_pred cCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 195 LDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 195 L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
|++|...+..|..+..+++|+.|++++|...+..|..+..+++|+.|+|++|.++.+|.
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 99987776668889999999999999988888888889999999999999999998774
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=6.9e-22 Score=206.89 Aligned_cols=227 Identities=14% Similarity=0.070 Sum_probs=139.4
Q ss_pred hhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCc
Q 014575 14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG 92 (422)
Q Consensus 14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~ 92 (422)
|..+++|+.|+++++.+. .+| .+.. ++|++|++.+|.++.+|.. .+++|++|++++|+..... .+..++
T Consensus 281 ~~~l~~L~~L~l~~~~~~-------~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIK-------YLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF-KKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCCCC-------CCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC-CCCCCT
T ss_pred cccCCCCCEEEecCccch-------hhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch-hhccCC
Confidence 788899999999887642 244 4555 7888899888888888844 7777888888777433322 344556
Q ss_pred chHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEE
Q 014575 93 KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVM 170 (422)
Q Consensus 93 ~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L 170 (422)
+|+++....+.+......+..+..+++|++|++++|. +..+|..+..+++|+.|++++|...+..| .+..+++|+.|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 6665533322222222123335666666666666664 33455556666666666666665555444 35566666666
Q ss_pred EeeCccCcc-cCccccCCCCCCEEecCCCCCCC-cccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccc
Q 014575 171 YLNGTAIEE-LPSSIECLSRLSALYLDNCKRLK-SLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248 (422)
Q Consensus 171 ~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l 248 (422)
++++|.++. .|..++.+++|++|++++|...+ .+|..+..+++|+.|++++|...+..|..++.+++|+.|++++|.+
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 666666653 34556666666666666655444 2555566666666666666655555556666666666666666666
Q ss_pred ccc
Q 014575 249 REV 251 (422)
Q Consensus 249 ~~l 251 (422)
+.+
T Consensus 510 ~~~ 512 (606)
T 3vq2_A 510 LFL 512 (606)
T ss_dssp SCE
T ss_pred CCc
Confidence 554
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=2.1e-21 Score=203.27 Aligned_cols=230 Identities=12% Similarity=0.074 Sum_probs=186.6
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccc---ccccc
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQL---WDDVE 89 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l---~~~~~ 89 (422)
.|.++++|+.|++++|.+ . .+| .+..++|++|++++|....-.....+++|++|++++|.+... +..+.
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~------~lp-~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-K------QFP-TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-S------SCC-CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred hccccccCCEEEcccccC-c------ccc-cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 678888999999999875 2 255 343389999999999533222333788999999999999876 45667
Q ss_pred CCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCc
Q 014575 90 HNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP-EISSAGNI 167 (422)
Q Consensus 90 ~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L 167 (422)
.+++|+.+....+.+.. .+..+..+++|+.|++++|...+..| ..+.++++|++|++++|......| .+..+++|
T Consensus 374 ~~~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp CCSCCCEEECCSCSEEE---ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred cCCcccEeECCCCcccc---chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 77888877433333222 12337789999999999998777776 568899999999999998877777 58899999
Q ss_pred CEEEeeCccCcc--cCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 014575 168 EVMYLNGTAIEE--LPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG 245 (422)
Q Consensus 168 ~~L~L~~n~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~ 245 (422)
++|++++|.++. +|..++.+++|+.|++++|...+..|..+..+++|+.|++++|+..+..|..++.+++|+.|++++
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 999999999985 788899999999999999887777788899999999999999988888899999999999999999
Q ss_pred cccccccc
Q 014575 246 TAIREVYF 253 (422)
Q Consensus 246 n~l~~lp~ 253 (422)
|+++.+|.
T Consensus 531 N~l~~~p~ 538 (606)
T 3vq2_A 531 NRIETSKG 538 (606)
T ss_dssp SCCCCEES
T ss_pred CcCcccCH
Confidence 99987664
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=192.13 Aligned_cols=224 Identities=17% Similarity=0.156 Sum_probs=132.4
Q ss_pred CCceEEEecCCCCCCCceeEEccC-CCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCcccccccc-ccCCcc
Q 014575 19 KLRFLKFYNSKDDGENKCKVSYLV-GPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDD-VEHNGK 93 (422)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~lp~-~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~ 93 (422)
+|+.|++++|.+. .++. .+.. ++|++|++++|.+..++.. | .+++|++|++++|+++.++.. +..+++
T Consensus 53 ~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 53 AVKSLDLSNNRIT-------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred cCcEEECCCCcCc-------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 5666666665432 1222 3444 6666666666666655432 3 556666666666666655443 445555
Q ss_pred hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccc-cccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEE
Q 014575 94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL-PAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMY 171 (422)
Q Consensus 94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~ 171 (422)
|+++....+.+..... ...+..+++|++|++++|..++.+ |..+.++++|+.|++++|...+..| .+..+++|++|+
T Consensus 126 L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp CSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 5555333332222111 012455666666666666433333 3445566666666666665554444 466666666666
Q ss_pred eeCccCcccCccc-cCCCCCCEEecCCCCCCC-------------------------------cccccccCCCCCcEEEc
Q 014575 172 LNGTAIEELPSSI-ECLSRLSALYLDNCKRLK-------------------------------SLPSSLCKLNSLNFIYL 219 (422)
Q Consensus 172 L~~n~i~~lp~~i-~~l~~L~~L~L~~~~~l~-------------------------------~lp~~l~~l~~L~~L~L 219 (422)
+++|.++.+|..+ ..+++|+.|++++|...+ .+|..+..+++|+.|++
T Consensus 205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 6666666655543 345666666666654332 35666788899999999
Q ss_pred cCCCCCCCCCccc-CCCCCCCEEeccCcccccc
Q 014575 220 RWCSSLKSLPDEL-GNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 220 s~c~~l~~lp~~~-~~l~~L~~L~l~~n~l~~l 251 (422)
++|. +..+|..+ +.+++|+.|++++|.+...
T Consensus 285 s~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 285 SRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCC-CCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 9865 45777764 8889999999999988743
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=209.58 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEcc
Q 014575 143 FLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR 220 (422)
Q Consensus 143 ~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 220 (422)
+|+.|++++|......| .+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|...+..|..+..+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 44444444444333333 355666777777777777655 3456677777777777765555556667777777777777
Q ss_pred CCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 221 WCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 221 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
+|...+..+..+..+++|+.|++++|.++.++.
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 765544444556677777777777777766554
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=5.2e-21 Score=186.37 Aligned_cols=223 Identities=12% Similarity=0.129 Sum_probs=154.2
Q ss_pred hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCC-CCCCCCCCCCCceEEEccCCcccccccccc
Q 014575 12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPL-KSLPSNIHPEKLVSIEMPHGNIQQLWDDVE 89 (422)
Q Consensus 12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l-~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~ 89 (422)
++|.++++|++|++++|.+.. ++. +.. ++|++|++++|+. ..++....+++|++|++++|.+..+.. +.
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~-------~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 174 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISD-------ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IA 174 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCC-------CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred hHHcCCCcCCEEECcCCcccC-------chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hc
Confidence 469999999999999987542 222 444 8888888888854 444443377888888888888877654 66
Q ss_pred CCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCE
Q 014575 90 HNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV 169 (422)
Q Consensus 90 ~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~ 169 (422)
.+++|+.+....+.+.+.. . +..+++|+.|++++|.... ++. +..+++|++|++++|... .++.+..+++|++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~ 247 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDIS---P-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKIT-DLSPLANLSQLTW 247 (347)
T ss_dssp GCTTCSEEECTTSCCCCCG---G-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCE
T ss_pred cCCCCCEEEccCCcccccc---c-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccC-CCcchhcCCCCCE
Confidence 6777776644433333222 1 5677778888888775443 333 667778888888887643 3444777778888
Q ss_pred EEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 170 MYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 170 L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
|++++|.++.++ .+..+++|+.|++++|. +..+|. +..+++|+.|++++|...+..|..++.+++|+.|++++|.++
T Consensus 248 L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 248 LEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp EECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred EECCCCccCCCh-hHhcCCCcCEEEccCCc-cCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 888888777764 56777788888888764 444543 677778888888877766666677777778888888888777
Q ss_pred cccc
Q 014575 250 EVYF 253 (422)
Q Consensus 250 ~lp~ 253 (422)
.++.
T Consensus 325 ~~~~ 328 (347)
T 4fmz_A 325 DIRP 328 (347)
T ss_dssp CCGG
T ss_pred cccC
Confidence 6654
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.1e-21 Score=199.83 Aligned_cols=234 Identities=15% Similarity=0.090 Sum_probs=169.3
Q ss_pred eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccc
Q 014575 7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQ 83 (422)
Q Consensus 7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~ 83 (422)
..+.+.+|.++++|+.|+|++|.+.+. .|..+.. ++|++|++++|.+..+|... .+++|++|+|++|.+.+
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYL------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCC------CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 346677999999999999999876432 3445566 99999999999999999874 78999999999999998
Q ss_pred ccc-cccCCcchHHHHHhhccCCCCC--Ccchh------------hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEE
Q 014575 84 LWD-DVEHNGKLKQIISRACNFFTKS--PNHSL------------TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELD 148 (422)
Q Consensus 84 l~~-~~~~l~~L~~l~~~~~~~~~~~--~~~~l------------i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 148 (422)
+++ .+..+++|+.|....+.+.... ..+++ +.....|+.|++++|. +..+|..+ .++|+.|+
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~ 238 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILK 238 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC-CCEEECSC--CSCCCEEE
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCc-cccccccc--CCCCCEEE
Confidence 765 4677888888744433333221 00100 1223344555555543 23333322 35788888
Q ss_pred eeCCCCCCCCcCCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575 149 LWGCSKLKTLPEISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS 227 (422)
Q Consensus 149 Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~ 227 (422)
|++|... ..+.+..+++|+.|+|++|.++.+ |..++.+++|+.|+|++| .+..+|..+..+++|+.|+|++|.. ..
T Consensus 239 L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l-~~ 315 (597)
T 3oja_B 239 LQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LH 315 (597)
T ss_dssp CCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCC-CC
T ss_pred CCCCCCC-CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCC-Cc
Confidence 8887644 456788888888888888888855 667888888888888885 4556777777788888888888644 47
Q ss_pred CCcccCCCCCCCEEeccCccccccc
Q 014575 228 LPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 228 lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+|..+..+++|+.|++++|.+..+|
T Consensus 316 i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred cCcccccCCCCCEEECCCCCCCCcC
Confidence 7877788888888888888887765
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.7e-20 Score=196.39 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=90.0
Q ss_pred CCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCC-cccccccCCCCC
Q 014575 139 FRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLK-SLPSSLCKLNSL 214 (422)
Q Consensus 139 ~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L 214 (422)
..+++|+.++++++......+ .+..+++++.++++.|.++.+ |..+..++.|+.|++++|+... .+|..+..+++|
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 344555555555554433333 355666667777776666643 3345566666666666655433 345556666666
Q ss_pred cEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc--cc---ccccccCCCCc----CCCccccccCcceeEEEec
Q 014575 215 NFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF--FQ---SSGRLLLPGNE----IPMWFSFQSLGSSSITLKM 285 (422)
Q Consensus 215 ~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~--f~---~~~~~~lpg~~----iP~wf~~~~~g~s~i~~~l 285 (422)
+.|+|++|...+..|..++.+++|++|+|++|+|+.+|. |. ....+.+.++. +|.+|.+.. .+- -++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~~L-~~L~L 574 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSL-AFLNL 574 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC-TTC-CEEEC
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh-CcC-CEEEe
Confidence 666666665555556666666666666666666666543 21 11222233332 355554321 122 35677
Q ss_pred CCCCCCCCCccceEE
Q 014575 286 PHAGWFSNNKVIGFA 300 (422)
Q Consensus 286 p~~~w~~~~~~~g~~ 300 (422)
..|+|.|++++..|.
T Consensus 575 ~~Np~~C~C~~~~~~ 589 (635)
T 4g8a_A 575 TQNDFACTCEHQSFL 589 (635)
T ss_dssp TTCCBCCSGGGHHHH
T ss_pred eCCCCcccCCcHHHH
Confidence 777898988876664
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=7e-21 Score=184.68 Aligned_cols=200 Identities=16% Similarity=0.185 Sum_probs=95.0
Q ss_pred CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccccc-cccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575 47 AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQL-WDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL 123 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L 123 (422)
++|++|++++|.+..+|. .| .+++|++|++++|+++.+ +..+..+++|+++....+.+...... + .++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~--~~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN---L--PSSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS---C--CTTCCEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc---c--cccCCEE
Confidence 455555555555555543 23 555555555555555554 33444555555552222222211110 1 1445555
Q ss_pred eccCCCCCccccccCCCCCCCCEEEeeCCCCCC--CCc-CCCCC--------------------CCcCEEEeeCccCccc
Q 014575 124 NLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK--TLP-EISSA--------------------GNIEVMYLNGTAIEEL 180 (422)
Q Consensus 124 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~p-~~~~l--------------------~~L~~L~L~~n~i~~l 180 (422)
++++|...+..+..+.++++|+.|++++|.... ..| .+..+ ++|++|++++|.++.+
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence 555554333223334455555555555544321 222 23333 3555555555555544
Q ss_pred C-ccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 181 P-SSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 181 p-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+ ..+..+++|+.|++++|...+..|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.++.+|
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccC
Confidence 3 34555555555555554433333334555555555555554 23355555555555555555555555443
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.5e-20 Score=183.09 Aligned_cols=222 Identities=13% Similarity=0.167 Sum_probs=159.5
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN 91 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l 91 (422)
+|..+++|++|++++|.+.. ++. +.. ++|++|++++|.+..+|.-..+++|++|++++|.+..+.. +..+
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~-------~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITD-------ISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred hhhhcCCccEEEccCCcccc-------chh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccC
Confidence 47778888888888776432 222 444 7777777777777776643366777777777777766544 4555
Q ss_pred cchHHHHHhhccCC--------------------CCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeC
Q 014575 92 GKLKQIISRACNFF--------------------TKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWG 151 (422)
Q Consensus 92 ~~L~~l~~~~~~~~--------------------~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~ 151 (422)
++|+.+....+... .....+. +..+++|+.|++++|. +..++. +..+++|+.|++++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYV 208 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCS
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeeccc
Confidence 55555421111000 0011111 6678888888888875 445555 77899999999999
Q ss_pred CCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcc
Q 014575 152 CSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDE 231 (422)
Q Consensus 152 ~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~ 231 (422)
|... .++.+..+++|++|++++|.++.+|. +..+++|++|++++|. +..++ .+..+++|+.|++++|.. ..+| .
T Consensus 209 n~l~-~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~n~l-~~~~-~ 282 (347)
T 4fmz_A 209 NQIT-DITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQI-SDIS-V 282 (347)
T ss_dssp SCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCC-CCCG-G
T ss_pred CCCC-CCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCCh-hHhcCCCcCEEEccCCcc-CCCh-h
Confidence 8644 44558889999999999999999987 8999999999999975 55565 488999999999999854 4454 5
Q ss_pred cCCCCCCCEEeccCccccccc
Q 014575 232 LGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 232 ~~~l~~L~~L~l~~n~l~~lp 252 (422)
+..+++|+.|++++|.++..+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGG
T ss_pred hcCCCCCCEEECcCCcCCCcC
Confidence 788999999999999998654
No 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.8e-19 Score=169.70 Aligned_cols=198 Identities=20% Similarity=0.146 Sum_probs=154.5
Q ss_pred CCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchHH
Q 014575 19 KLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQ 96 (422)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 96 (422)
+++.++++++.+. .+|..+. .+|++|++++|.+..+|.. | .+++|++|++++|.++.++.+.
T Consensus 17 ~~~~l~~~~~~l~-------~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~-------- 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-------AIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-------- 80 (270)
T ss_dssp TTTEEECTTSCCS-------SCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT--------
T ss_pred CCCEEEccCCCCC-------ccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh--------
Confidence 5667777776532 1443332 6788888888888888763 4 7788888888888887665432
Q ss_pred HHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCc
Q 014575 97 IISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGT 175 (422)
Q Consensus 97 l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n 175 (422)
+..+++|++|++++|......+..+.++++|++|++++|......+ .+..+++|++|+|++|
T Consensus 81 -----------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 81 -----------------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp -----------------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -----------------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 5678899999999987655555566789999999999988666555 3789999999999999
Q ss_pred cCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 176 AIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 176 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
.++.+|.. ++.+++|+.|++++|...+..+..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 99998875 789999999999997655444455888999999999998655544456888999999999999875
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.5e-20 Score=180.12 Aligned_cols=208 Identities=18% Similarity=0.177 Sum_probs=150.4
Q ss_pred ccCCCCCCCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCccccc---cccccCCcchHHHHHhhccCCCCCCcchhh
Q 014575 40 YLVGPGFAEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQL---WDDVEHNGKLKQIISRACNFFTKSPNHSLT 114 (422)
Q Consensus 40 lp~~l~~~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~l~~~~~~~~~~~~~~~li 114 (422)
+|.++. ++|++|++++|.++.+|..+ .+++|++|++++|.+... +.....+++|+++....+.+. ..+..+
T Consensus 22 ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~---~l~~~~ 97 (306)
T 2z66_A 22 VPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNF 97 (306)
T ss_dssp CCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE---EEEEEE
T ss_pred CCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc---cChhhc
Confidence 454332 78999999999999999874 889999999999999865 344455666666633222222 122226
Q ss_pred hcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcc--cCccccCCCCC
Q 014575 115 LHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEE--LPSSIECLSRL 190 (422)
Q Consensus 115 ~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L 190 (422)
..+++|++|++++|...+..+ ..+..+++|++|++++|......| .+..+++|++|+|++|.++. +|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 677888888888875443333 356678888888888887665555 36777888888888888874 67778888888
Q ss_pred CEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 191 SALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 191 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
++|++++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.++..
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 8888888765555577777888888888888766555555677788888888888877643
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=7.2e-20 Score=173.60 Aligned_cols=180 Identities=21% Similarity=0.300 Sum_probs=151.5
Q ss_pred CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEe
Q 014575 47 AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN 124 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~ 124 (422)
++|++|+++++.+..+|.. | .+++|++|++++|.++.+... .+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------------------------~~~~l~~L~~L~ 86 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-------------------------AFTGLALLEQLD 86 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------------------------TTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-------------------------hcCCccCCCEEe
Confidence 6788888888888887754 4 678888888888888765332 166788999999
Q ss_pred ccCCCCCccc-cccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCC
Q 014575 125 LNNCKSLRIL-PAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRL 201 (422)
Q Consensus 125 L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l 201 (422)
+++|..++.+ |..+..+++|++|++++|......| .+..+++|++|++++|.++.+|.. ++.+++|+.|++++|+ +
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l 165 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-I 165 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-c
Confidence 9999755555 7778899999999999998776656 488999999999999999988864 7899999999999975 4
Q ss_pred Ccccc-cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 202 KSLPS-SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 202 ~~lp~-~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
..+|. .+..+++|+.|++++|...+..|..+..+++|+.|++++|.++.+|
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 55554 5889999999999999888888999999999999999999998765
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=6.1e-21 Score=183.71 Aligned_cols=198 Identities=16% Similarity=0.178 Sum_probs=135.8
Q ss_pred CCCCCceEEEecCCCCCCCceeEEccCCC--CC-CCeeEEEecCCCCCCCCCCC-CC-----CCceEEEccCCccccccc
Q 014575 16 KMCKLRFLKFYNSKDDGENKCKVSYLVGP--GF-AEVRYLHWYGYPLKSLPSNI-HP-----EKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l--~~-~~Lr~L~l~~~~l~~lP~~~-~~-----~~L~~L~L~~~~l~~l~~ 86 (422)
++++|++|++++|.+.+. +|..+ .. ++|++|++++|.+..+|..+ .+ ++|++|+|++|++.++..
T Consensus 93 ~l~~L~~L~L~~n~l~~~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGT------APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSC------CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred CcCCccEEEccCCcccch------hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 577777777777665433 45554 34 77777777777777766544 33 677777777777766543
Q ss_pred cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcc--ccccC--CCCCCCCEEEeeCCCCCCCCc---
Q 014575 87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI--LPAGI--FRLEFLKELDLWGCSKLKTLP--- 159 (422)
Q Consensus 87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~--lp~~i--~~l~~L~~L~Ls~~~~l~~~p--- 159 (422)
.. ++.+++|++|+|++|...+. +|..+ .++++|++|++++|... .++
T Consensus 167 ~~-------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~ 220 (312)
T 1wwl_A 167 EQ-------------------------VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVC 220 (312)
T ss_dssp TT-------------------------CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC-CHHHHH
T ss_pred HH-------------------------hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc-chHHHH
Confidence 21 55677788888888876554 33344 67888888888887643 222
Q ss_pred -C-CCCCCCcCEEEeeCccCcccC--ccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCC
Q 014575 160 -E-ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235 (422)
Q Consensus 160 -~-~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l 235 (422)
. +..+++|++|+|++|.++..+ ..+..+++|++|+|++|. ++.+|..+. ++|+.|++++|+. ..+|. +..+
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~-~~~l 295 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRL-DRNPS-PDEL 295 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCC-CSCCC-TTTS
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCC-CCChh-HhhC
Confidence 1 346678888888888887654 345667888888888865 447777665 7888888888644 44466 7778
Q ss_pred CCCCEEeccCccccc
Q 014575 236 EALDSLIAEGTAIRE 250 (422)
Q Consensus 236 ~~L~~L~l~~n~l~~ 250 (422)
++|+.|++++|+++.
T Consensus 296 ~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEEEEECTTCTTTC
T ss_pred CCCCEEeccCCCCCC
Confidence 888888888887764
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=9.7e-20 Score=176.37 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=173.0
Q ss_pred CCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccc-cccccCCcc
Q 014575 17 MCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQL-WDDVEHNGK 93 (422)
Q Consensus 17 m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~ 93 (422)
..+|+.++++++.+. .+|..+. ++|++|++++|.+..+|.. | .+++|++|++++|.+.++ +..+..+++
T Consensus 30 ~c~l~~l~~~~~~l~-------~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-------KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101 (330)
T ss_dssp EEETTEEECTTSCCC-------SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred cCCCeEEEecCCCcc-------ccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence 348999999876532 2454332 7899999999999999874 5 889999999999999987 566778888
Q ss_pred hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC--CCc-CCCCCCCcCEE
Q 014575 94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK--TLP-EISSAGNIEVM 170 (422)
Q Consensus 94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~p-~~~~l~~L~~L 170 (422)
|+++....+.+...... ..++|++|++++|...+..+..+.++++|+.|++++|.... ..+ .+..+++|++|
T Consensus 102 L~~L~Ls~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 102 LERLYLSKNQLKELPEK-----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CCEEECCSSCCSBCCSS-----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCEEECCCCcCCccChh-----hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 88874433333322111 12689999999987666666667889999999999987642 333 57888899999
Q ss_pred EeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccc
Q 014575 171 YLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 171 ~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 250 (422)
++++|.++.+|..+. ++|+.|++++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.++.
T Consensus 177 ~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 254 (330)
T 1xku_A 177 RIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254 (330)
T ss_dssp ECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred ECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc
Confidence 999999999887664 789999999987666667888999999999999987766666678888999999999998886
Q ss_pred ccc
Q 014575 251 VYF 253 (422)
Q Consensus 251 lp~ 253 (422)
+|.
T Consensus 255 lp~ 257 (330)
T 1xku_A 255 VPG 257 (330)
T ss_dssp CCT
T ss_pred CCh
Confidence 654
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=6.1e-20 Score=186.13 Aligned_cols=212 Identities=16% Similarity=0.094 Sum_probs=112.7
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN 91 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l 91 (422)
.+.++++|+.|++++|.+.+ +| ++.. ++|++|++++|.+..+| -..+++|++|++++|.++++. +..+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-------~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-------MT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-------CT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred ChhHcCCCCEEEccCCCccc-------Ch-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCC
Confidence 45556666666666655331 22 3333 56666666666666654 125556666666666666542 4555
Q ss_pred cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEE
Q 014575 92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 171 (422)
Q Consensus 92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~ 171 (422)
++|+++....+.+... + ++.+++|++|++++|...+ ++ +.++++|+.|++++|...+.+ .+..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEE
Confidence 5555553333322221 1 4455666666666654333 32 455666666666665544444 345555666666
Q ss_pred eeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 172 L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
+++|.++.+| ++.+++|+.|++++|.. ..++ ++.+++|+.|++++|+..+ +| ++.+++|+.|++++|.++.+
T Consensus 177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l-~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 177 CSFNKITELD--VSQNKLLNRLNCDTNNI-TKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCSSCCCCCC--CTTCTTCCEEECCSSCC-SCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCCccceec--cccCCCCCEEECcCCcC-Ceec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 6666666555 55555666666665432 2232 4555566666665543333 44 55555566666665555544
Q ss_pred c
Q 014575 252 Y 252 (422)
Q Consensus 252 p 252 (422)
|
T Consensus 249 ~ 249 (457)
T 3bz5_A 249 D 249 (457)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2.8e-20 Score=175.51 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=134.4
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
++|+.|++.++.+..++.-..+++|++|++++|.+..+. . +..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~--------------------------l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A--------------------------LKELTNLTYLILT 93 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G--------------------------GTTCTTCCEEECT
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h--------------------------hcCCCCCCEEECC
Confidence 778888888888888776557888888888888877642 1 4567788888888
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSL 204 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l 204 (422)
+|...+..+..+.++++|++|++++|......+. +..+++|++|+|++|.++.+|.. ++.+++|+.|++++|+..+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 8866655555567888888888888876555443 67888888888888888877764 578888888888887655444
Q ss_pred cccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 205 PSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 205 p~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
|..+..+++|+.|++++|...+..|..++.+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 455678888888888887776666666788888888888888765
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=193.53 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=90.8
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCccccccccccCCcch
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKL 94 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L 94 (422)
++|+.|++++|.+... .|..+.. ++|++|++++|.+..+ |..| .+++|++|+|++|+|+.++.. .+++|
T Consensus 21 ~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISEL------WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCCC------CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccEEECCCCccccc------ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 7899999999875432 2344555 8999999999999988 5566 889999999999999998776 78888
Q ss_pred HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC--CEEEeeCCCC
Q 014575 95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL--KELDLWGCSK 154 (422)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~~~~ 154 (422)
+++....+.+... ..+..++.+++|++|++++|...+ ..+..+++| +.|++++|..
T Consensus 93 ~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 93 KHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cEEeccCCccccc-cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 8885544444332 233447888888888888876543 223445555 6666666554
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.8e-19 Score=171.73 Aligned_cols=199 Identities=20% Similarity=0.214 Sum_probs=162.6
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccC
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEH 90 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~ 90 (422)
.+.++++|+.+++.++.+. .+|.++. +++++|++++|.+..++.. | .+++|++|++++|.|+.++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-------~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-------ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---- 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-------SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----
T ss_pred cccccCCccEEECCCCCCC-------cCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----
Confidence 4678889999999887643 2454433 7889999999998887643 4 78899999999998887643
Q ss_pred CcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCE
Q 014575 91 NGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEV 169 (422)
Q Consensus 91 l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~ 169 (422)
.+.+++|++|++++|. +..+|..+..+++|++|++++|......| .+..+++|++
T Consensus 73 -----------------------~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 73 -----------------------DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp -----------------------CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred -----------------------CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 1356789999999985 56888888899999999999998665555 4899999999
Q ss_pred EEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCccccc-ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575 170 MYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA 247 (422)
Q Consensus 170 L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~ 247 (422)
|+|++|+|+.+|.. +..+++|+.|+|++|+ +..+|.. +..+++|+.|+|++| .+..+|..+..+.+|+.+++++|+
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 99999999988865 5789999999999965 5566654 578999999999985 566899999889999999999998
Q ss_pred cc
Q 014575 248 IR 249 (422)
Q Consensus 248 l~ 249 (422)
+.
T Consensus 207 ~~ 208 (290)
T 1p9a_G 207 WL 208 (290)
T ss_dssp BC
T ss_pred cc
Confidence 76
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.5e-20 Score=181.26 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=165.8
Q ss_pred hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccccccc
Q 014575 11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVE 89 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~ 89 (422)
...|..+++|+.|++++|.+... .|..+.. ++|++|++++|.+..+++-..+++|++|++++|.+++++..
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-- 98 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-- 98 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCC------CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEEC--
T ss_pred HHHhccCCCCCEEECcCCccCcC------CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCC--
Confidence 34566677888888888765422 2334445 78888888888877666533777888888888888766432
Q ss_pred CCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CC-CCCCCc
Q 014575 90 HNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EI-SSAGNI 167 (422)
Q Consensus 90 ~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~-~~l~~L 167 (422)
++|+++....+.+.... ...+++|++|++++|...+..|..+..+++|++|++++|......| .+ ..+++|
T Consensus 99 --~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 99 --PSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp --TTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCcCEEECCCCccCCcC-----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 45554422222222111 2346789999999998777667778889999999999998666555 34 468899
Q ss_pred CEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575 168 EVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA 247 (422)
Q Consensus 168 ~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~ 247 (422)
++|+|++|.++.+|... .+++|++|++++|+ +..+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.
T Consensus 172 ~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CEEECTTSCCCEEECCC-CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCccccccc-ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 99999999999886544 58999999999964 5677777999999999999997 455789999999999999999999
Q ss_pred cc
Q 014575 248 IR 249 (422)
Q Consensus 248 l~ 249 (422)
+.
T Consensus 249 ~~ 250 (317)
T 3o53_A 249 FH 250 (317)
T ss_dssp CB
T ss_pred cc
Confidence 87
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.6e-21 Score=198.92 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=88.4
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQL 84 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l 84 (422)
.+.+.+|.+|++|++|++++|.+.. ..|..+.. ++|++|++++|.+..+|.. | .+++|++|++++|.++.+
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp EECSSTTSSCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred ccChhhhhcCCcccEEECCCCCcCc------cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence 4557788899999999998876431 23455666 8899999999988888876 4 788899999999988853
Q ss_pred --cccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCC
Q 014575 85 --WDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLE 142 (422)
Q Consensus 85 --~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 142 (422)
+..+..+++|+++....+.... ...+..++.+++|++|++++|...+..|..+.+++
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 114 GVTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred chhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 4566777777777333322111 11122366778888888888776666666555443
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1e-20 Score=193.39 Aligned_cols=220 Identities=14% Similarity=0.074 Sum_probs=170.8
Q ss_pred hhhhCCC----CCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccc
Q 014575 12 DTFTKMC----KLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 12 ~~f~~m~----~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~ 86 (422)
.++..+. +|+.|+|++|.+... .|..+.. ++|++|++++|.+..+++-..+++|++|+|++|.|..++.
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp HHHHTTSTTGGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE
T ss_pred HHHHHhcccCCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC
Confidence 4444444 899999998875432 3455666 8899999999988876663378899999999998887754
Q ss_pred cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCC-CC
Q 014575 87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EIS-SA 164 (422)
Q Consensus 87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~-~l 164 (422)
. ++|+.|....+.+.... ...+++|+.|+|++|...+..|..+.++++|+.|+|++|...+..| .+. .+
T Consensus 98 ~----~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 98 G----PSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp C----TTCCEEECCSSCCCCEE-----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred C----CCcCEEECcCCcCCCCC-----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 3 55555533333332221 2246789999999998888778888899999999999998777666 454 78
Q ss_pred CCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575 165 GNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE 244 (422)
Q Consensus 165 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~ 244 (422)
++|+.|+|++|.|+.+|.. ..+++|+.|+|++|. +..+|..+..+++|+.|+|++|.. ..+|..+..+++|+.|+++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp TTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECT
T ss_pred CcccEEecCCCcccccccc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcC
Confidence 9999999999999988654 468999999999965 556777799999999999999654 4689889999999999999
Q ss_pred Ccccc
Q 014575 245 GTAIR 249 (422)
Q Consensus 245 ~n~l~ 249 (422)
+|.+.
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 99887
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.9e-19 Score=190.94 Aligned_cols=235 Identities=18% Similarity=0.142 Sum_probs=104.7
Q ss_pred eChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCC--CCCCCCCC----CCCCceEEEccCCcc
Q 014575 9 LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYP--LKSLPSNI----HPEKLVSIEMPHGNI 81 (422)
Q Consensus 9 l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~--l~~lP~~~----~~~~L~~L~L~~~~l 81 (422)
+...+|..+++|+.|++++|.+.+. .+..+.. ++|++|++++|. +..+|... ...+|+.|++++|++
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGI------KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCC------CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cChhhcccCCCCCEEECCCCccCCC------ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 4445677777777777777654321 2233333 556666655553 22333221 123455555555555
Q ss_pred cccc-ccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCc--------------------------cc
Q 014575 82 QQLW-DDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR--------------------------IL 134 (422)
Q Consensus 82 ~~l~-~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~--------------------------~l 134 (422)
.++. ..+..+++|+.+....+.+.+ ...+..+..+++|++|++++|...+ .+
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQ-ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEE-ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCcc-ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 4432 233344444443211111110 0011123444444555554444333 34
Q ss_pred cccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc---------cccCCCCCCEEecCCCCCCCcc
Q 014575 135 PAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS---------SIECLSRLSALYLDNCKRLKSL 204 (422)
Q Consensus 135 p~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~---------~i~~l~~L~~L~L~~~~~l~~l 204 (422)
|..+.++++|+.|++++|......| .+..+++|+.|+|++|.++.++. .++.+++|+.|++++|. +..+
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCC
Confidence 4444455555555555544333322 24445555555555555543311 13445555555555532 2344
Q ss_pred cc-cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 205 PS-SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 205 p~-~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
|. .+.++++|+.|++++|+..+..+..+..+++|+.|++++|.++.+
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 43 244555555555554333322222234455555555555555433
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=193.89 Aligned_cols=233 Identities=15% Similarity=0.128 Sum_probs=167.4
Q ss_pred ChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccccccc
Q 014575 10 HPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVE 89 (422)
Q Consensus 10 ~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~ 89 (422)
.+++|.++++|+.|++++|.+. .+|..+...+|++|++.+|.+..+|. ..+++|+.|++++|.+...... .
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~-------~l~~~~~~~~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~-~ 344 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIE-------RVKDFSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE-V 344 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEEC-------SCCBCCSCCCCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC-C
T ss_pred chhhhcCcCcccEEEecCccch-------hhhhhhccCCccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc-c
Confidence 4567888888888888886532 24444333578888888888887776 3566788888888877655433 5
Q ss_pred CCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCc
Q 014575 90 HNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNI 167 (422)
Q Consensus 90 ~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L 167 (422)
.+++|+.+....+.+......+..+..+++|++|++++|... .+|..+..+++|++|++++|......| .+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 666666663333332222222344778888888888887544 444447788888888888887666555 47788888
Q ss_pred CEEEeeCccCcc-cCccccCCCCCCEEecCCCCCC-CcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 014575 168 EVMYLNGTAIEE-LPSSIECLSRLSALYLDNCKRL-KSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG 245 (422)
Q Consensus 168 ~~L~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~ 245 (422)
++|++++|.++. .|..+..+++|+.|++++|... +.+|..+..+++|+.|++++|...+..|..++.+++|+.|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 888888888874 4567788888888888887765 46888888888888888888877777788888888888888888
Q ss_pred ccccccc
Q 014575 246 TAIREVY 252 (422)
Q Consensus 246 n~l~~lp 252 (422)
|.++.+|
T Consensus 504 n~l~~~~ 510 (570)
T 2z63_A 504 NQLKSVP 510 (570)
T ss_dssp SCCSCCC
T ss_pred CcCCCCC
Confidence 8887654
No 53
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=5.1e-19 Score=164.75 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=151.5
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
...+++++.++.+..+|..+. ++|+.|+|++|++.++.... +..+++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~-------------------------~~~l~~L~~L~L~ 67 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDAT-------------------------FRGLTKLTWLNLD 67 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTT-------------------------TTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhH-------------------------hcCcccCCEEECC
Confidence 456789999999999998874 69999999999998875432 6678899999999
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSL 204 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l 204 (422)
+|...+..|..+.++++|++|++++|......+ .+..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|.. ..+
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~ 146 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-Ccc
Confidence 998777777778899999999999998665555 478999999999999999999876 58899999999999755 455
Q ss_pred cc-cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 205 PS-SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 205 p~-~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
|. .+..+++|+.|+|++|...+..|..+..+++|+.|++++|.+...
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 54 689999999999999877766666889999999999999998743
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=1.1e-19 Score=184.46 Aligned_cols=170 Identities=13% Similarity=0.159 Sum_probs=74.6
Q ss_pred hhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCc
Q 014575 14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG 92 (422)
Q Consensus 14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~ 92 (422)
|..+++|++|++++|.+.. ++. +.. ++|++|++++|.+..+|.-..+++|++|++++|.++.+.. +..++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTD-------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hhhhcCCCEEECCCCccCC-------chh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 5666666666666665332 111 333 5555555555555555442244555555555555544432 34444
Q ss_pred chHHHHHhhccCCCC------------------CCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCC
Q 014575 93 KLKQIISRACNFFTK------------------SPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSK 154 (422)
Q Consensus 93 ~L~~l~~~~~~~~~~------------------~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~ 154 (422)
+|+++....+.+.+. ...+. ++.+++|+.|++++|. +..++. +.++++|++|++++|..
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQI 211 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCC
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCcc
Confidence 444331111111000 00111 4455566666666554 223332 44555555555555443
Q ss_pred CCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCC
Q 014575 155 LKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDN 197 (422)
Q Consensus 155 l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~ 197 (422)
.... .++.+++|+.|++++|.++.++ .+..+++|+.|++++
T Consensus 212 ~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 212 SDIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN 252 (466)
T ss_dssp CCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred cccc-cccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCC
Confidence 3222 2333444444444444444432 233344444444444
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.8e-19 Score=191.13 Aligned_cols=234 Identities=21% Similarity=0.149 Sum_probs=112.8
Q ss_pred hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCC------CCCC----CC-CCCCceEEEccC
Q 014575 11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLK------SLPS----NI-HPEKLVSIEMPH 78 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~------~lP~----~~-~~~~L~~L~L~~ 78 (422)
+.+|.++++|+.|++++|.+. -..|..+.. ++|++|++.++... .+|. .| .+++|++|++++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQ------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBS------EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred cccccCcccccEeeCCCCccC------ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 445555666666666555422 113334444 55666655544222 3332 23 556777777777
Q ss_pred Cccccccc-cccCCcchHHHHHhhccCCCCCCcchhhh--cCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCC
Q 014575 79 GNIQQLWD-DVEHNGKLKQIISRACNFFTKSPNHSLTL--HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL 155 (422)
Q Consensus 79 ~~l~~l~~-~~~~l~~L~~l~~~~~~~~~~~~~~~li~--~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l 155 (422)
|.+.++.+ .+..+++|+++....+...........+. ..++|+.|++++|...+..|..+..+++|+.|++++|...
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 77766543 24555666555222111100000000011 1134555555555555555555555666666666665544
Q ss_pred CCCc--CCCCCCCcCEEEeeCccCcccC-ccccCCCCCCEEecCCCCCC--CcccccccCCCCCcEEEccCCCCCCCCCc
Q 014575 156 KTLP--EISSAGNIEVMYLNGTAIEELP-SSIECLSRLSALYLDNCKRL--KSLPSSLCKLNSLNFIYLRWCSSLKSLPD 230 (422)
Q Consensus 156 ~~~p--~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~ 230 (422)
+.+| .+..+++|++|++++|.++.++ ..+..+++|+.|++++|... +.+|..+..+++|+.|++++|...+..|.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 4443 3555555666666655555432 23444555555555554322 34455555555555555555444333333
Q ss_pred ccCCCCCCCEEeccCccccc
Q 014575 231 ELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 231 ~~~~l~~L~~L~l~~n~l~~ 250 (422)
.+..+++|+.|++++|.++.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGG
T ss_pred hhccccccCEEeCCCCCccc
Confidence 44555555555555555444
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=7.6e-20 Score=190.02 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=88.8
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCccccccccccCCcch
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLP-SNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKL 94 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP-~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L 94 (422)
++|+.|++++|.+... .|..+.. ++|++|++++|.+..++ ..| .+++|++|++++|+|+.++.. .+++|
T Consensus 52 ~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSISEL------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp TTCCEEECCSSCCCCC------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCcCEEECCCCCcccc------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 6899999999875432 3356666 89999999999999885 445 789999999999999988776 78888
Q ss_pred HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC--CEEEeeCCCC
Q 014575 95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL--KELDLWGCSK 154 (422)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~~~~ 154 (422)
+++....+.+.... .+..++.+++|++|++++|...+. .+..+++| +.|++++|..
T Consensus 124 ~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 124 RHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CEEECCCCCccccC-chHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 88855444443332 223478888888888888765432 23333444 6666666554
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=9.5e-20 Score=175.15 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=157.1
Q ss_pred hhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCc
Q 014575 14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG 92 (422)
Q Consensus 14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~ 92 (422)
+..+++|+.|+++++.+. .++ ++.. ++|++|++++|.+..+|.-..+++|++|++++|+++.+. .
T Consensus 37 ~~~l~~L~~L~l~~~~i~-------~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~----- 102 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-------TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-A----- 102 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-------CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-G-----
T ss_pred HHHcCCcCEEEeeCCCcc-------Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-h-----
Confidence 455778888888886532 133 4444 888888888888888887337788888888888877642 1
Q ss_pred chHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEe
Q 014575 93 KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 172 (422)
Q Consensus 93 ~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L 172 (422)
+..+++|++|++++|.. ..+|. +..+++|+.|++++|.. ..++.+..+++|+.|+|
T Consensus 103 ---------------------~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l 158 (308)
T 1h6u_A 103 ---------------------IAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSI 158 (308)
T ss_dssp ---------------------GTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEEC
T ss_pred ---------------------hcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCcc-CcCccccCCCCccEEEc
Confidence 56788899999999864 45665 88999999999999864 55666888999999999
Q ss_pred eCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 173 NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 173 ~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
++|.++.++. +..+++|+.|++++|. +..+|. +..+++|+.|++++|... .++. +..+++|+.|++++|.++..|
T Consensus 159 ~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 159 GNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred cCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCCccC-cccc-ccCCCCCCEEEccCCeeecCC
Confidence 9999999887 8999999999999965 556665 889999999999997554 4543 788999999999999998766
Q ss_pred c
Q 014575 253 F 253 (422)
Q Consensus 253 ~ 253 (422)
.
T Consensus 234 ~ 234 (308)
T 1h6u_A 234 V 234 (308)
T ss_dssp E
T ss_pred e
Confidence 4
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=2.9e-19 Score=168.61 Aligned_cols=199 Identities=16% Similarity=0.068 Sum_probs=137.2
Q ss_pred CCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchH
Q 014575 19 KLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLK 95 (422)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 95 (422)
+|+.|++++|.+.. ..+..+.. ++|++|++++|.+..++.. | .+++|++|++++|.+..+...
T Consensus 29 ~l~~L~ls~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 94 (276)
T 2z62_A 29 STKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-------- 94 (276)
T ss_dssp TCCEEECTTCCCCE------ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------
T ss_pred CccEEECCCCcccc------cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh--------
Confidence 46666666654321 01223444 6666666666666666542 3 556666666666666554322
Q ss_pred HHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC-CCc-CCCCCCCcCEEEee
Q 014575 96 QIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK-TLP-EISSAGNIEVMYLN 173 (422)
Q Consensus 96 ~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~L~L~ 173 (422)
.+..+++|++|++++|...+..+..+.++++|++|++++|.... .+| .+..+++|+.|+|+
T Consensus 95 -----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 95 -----------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp -----------------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred -----------------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 25677889999999887665555568888999999999987655 245 58888899999999
Q ss_pred CccCcccCc-cccCCCCCC----EEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccc
Q 014575 174 GTAIEELPS-SIECLSRLS----ALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248 (422)
Q Consensus 174 ~n~i~~lp~-~i~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l 248 (422)
+|.++.+|. .+..+.+|+ .|++++|. +..+|.......+|+.|++++|...+..+..+..+++|+.|++++|++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 999987764 555555555 88999854 556665555666899999998765444444568889999999999987
Q ss_pred c
Q 014575 249 R 249 (422)
Q Consensus 249 ~ 249 (422)
.
T Consensus 237 ~ 237 (276)
T 2z62_A 237 D 237 (276)
T ss_dssp C
T ss_pred c
Confidence 7
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.5e-21 Score=197.96 Aligned_cols=220 Identities=12% Similarity=0.061 Sum_probs=180.1
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~ 86 (422)
.+.+.+|.++++|++|+|++|.+.+. .| +.. ++|++|++++|.+..+|.. ++|++|++++|.|..++.
T Consensus 48 ~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~l~~~~~ 116 (487)
T 3oja_A 48 QISAADLAPFTKLELLNLSSNVLYET------LD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC 116 (487)
T ss_dssp CCCGGGGTTCTTCCEEECTTSCCEEE------EE--CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCCCEEE
T ss_pred CCCHHHHhCCCCCCEEEeeCCCCCCC------cc--cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCcCCCCCc
Confidence 46688999999999999999875321 22 555 9999999999999988863 799999999999998765
Q ss_pred cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCcCCCCCC
Q 014575 87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSAG 165 (422)
Q Consensus 87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p~~~~l~ 165 (422)
. .+++|+.|....+.+.+. .+..++.+++|++|+|++|...+..|..+. .+++|++|+|++|... .+|....++
T Consensus 117 ~--~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~ 191 (487)
T 3oja_A 117 S--RGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFA 191 (487)
T ss_dssp C--CCSSCEEEECCSSCCCSG--GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCT
T ss_pred c--ccCCCCEEECCCCCCCCC--CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-cccccccCC
Confidence 3 456777764444433332 233378899999999999988888888776 7999999999998744 457667799
Q ss_pred CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCC-CCCCcccCCCCCCCEEecc
Q 014575 166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSL-KSLPDELGNLEALDSLIAE 244 (422)
Q Consensus 166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l-~~lp~~~~~l~~L~~L~l~ 244 (422)
+|+.|+|++|.|+.+|+.+..+++|+.|+|++|. +..+|..+..+++|+.|++++|... +.+|..+..++.|+.++++
T Consensus 192 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999999999999999999999999965 5679999999999999999998877 5777878877777777664
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=7.3e-19 Score=165.76 Aligned_cols=197 Identities=18% Similarity=0.135 Sum_probs=162.2
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN 91 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l 91 (422)
.+..+++|+.|.+.++.+. -..++.. ++|++|++++|.+..++....+++|++|++++|.+++++...
T Consensus 36 ~~~~l~~L~~L~l~~~~i~--------~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--- 104 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK--------SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGV--- 104 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC--------CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTT---
T ss_pred ccccccceeeeeeCCCCcc--------cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhH---
Confidence 4567889999999987632 2234555 999999999999999875448899999999999998775532
Q ss_pred cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEE
Q 014575 92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVM 170 (422)
Q Consensus 92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L 170 (422)
++.+++|++|++++|...+..+..+.++++|++|++++|......+. +..+++|+.|
T Consensus 105 ----------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 105 ----------------------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp ----------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ----------------------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 56788999999999987766666678999999999999976554443 7899999999
Q ss_pred EeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 171 YLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 171 ~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
++++|.++.+|.. ++.+++|+.|++++|...+..|..+..+++|+.|++++|+..+. +++|+.|++..|.+.
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHS 235 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTG
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCC
Confidence 9999999988765 58899999999999877666666688999999999999876544 457888888888776
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=1.7e-19 Score=183.05 Aligned_cols=220 Identities=16% Similarity=0.165 Sum_probs=165.0
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN 91 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l 91 (422)
+|.++++|+.|++.++. . .++ .+.. ++|++|++++|.+..++....+++|++|++++|.+..+.+ +..+
T Consensus 151 ~~~~l~~L~~L~l~~~~-~-------~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l 220 (466)
T 1o6v_A 151 ALSGLTSLQQLSFGNQV-T-------DLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGIL 220 (466)
T ss_dssp GGTTCTTCSEEEEEESC-C-------CCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGC
T ss_pred hhccCCcccEeecCCcc-c-------Cch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-cccc
Confidence 58889999999997532 1 122 2444 8899999999998888764478899999999998887654 5667
Q ss_pred cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEE
Q 014575 92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 171 (422)
Q Consensus 92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~ 171 (422)
++|+.+....+.+.+. + .+..+++|+.|++++|...+. +. +..+++|+.|++++|... .++.+..+++|+.|+
T Consensus 221 ~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~ 293 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDI---G-TLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQIS-NISPLAGLTALTNLE 293 (466)
T ss_dssp TTCCEEECCSSCCCCC---G-GGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEE
T ss_pred CCCCEEECCCCCcccc---h-hhhcCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccC-ccccccCCCccCeEE
Confidence 7777774444433332 2 267888999999999865544 33 778899999999998654 445588888999999
Q ss_pred eeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 172 L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
|++|.++.+++ ++.+++|+.|++++|+..+..| +..+++|+.|++++|...+ + ..+..+++|+.|++++|.++.+
T Consensus 294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V-SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCBC
T ss_pred cCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-c-hhhccCCCCCEEeCCCCccCcc
Confidence 99999888776 7888999999999976555444 6788899999998875444 4 4678888999999999988876
Q ss_pred ccc
Q 014575 252 YFF 254 (422)
Q Consensus 252 p~f 254 (422)
+.+
T Consensus 369 ~~~ 371 (466)
T 1o6v_A 369 TPL 371 (466)
T ss_dssp GGG
T ss_pred chh
Confidence 553
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=1e-18 Score=177.13 Aligned_cols=208 Identities=17% Similarity=0.114 Sum_probs=152.9
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN 91 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l 91 (422)
+|.++++|++|++++|.+.+ +| +.. ++|++|++++|.+..+| -..+++|++|++++|++++++ +..+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l 126 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQN 126 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred hhcccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCC
Confidence 68999999999999987643 22 455 89999999999999886 227889999999999999874 7778
Q ss_pred cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEE
Q 014575 92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 171 (422)
Q Consensus 92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~ 171 (422)
++|+++....+.+.+. + ++.+++|++|++++|...+.++ +..+++|+.|++++|...+ +| ++.+++|+.|+
T Consensus 127 ~~L~~L~l~~N~l~~l---~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~-l~~l~~L~~L~ 197 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEI---D--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD-VSQNKLLNRLN 197 (457)
T ss_dssp TTCCEEECTTSCCSCC---C--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC-CTTCTTCCEEE
T ss_pred CcCCEEECCCCcccee---c--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce-ec-cccCCCCCEEE
Confidence 8888875444444432 1 6678888888888887777763 6788888888888876443 55 77778888888
Q ss_pred eeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 172 L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
+++|.++.++ ++.+++|+.|++++|+. ..+| +..+++|+.|++++|+..+ +| ++.+++|+.|++++|.++
T Consensus 198 l~~N~l~~~~--l~~l~~L~~L~Ls~N~l-~~ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 198 CDTNNITKLD--LNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLL 267 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCS
T ss_pred CcCCcCCeec--cccCCCCCEEECcCCcc-cccC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCC
Confidence 8888888774 77788888888888654 4466 6777888888888765444 33 334455555555544443
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=180.59 Aligned_cols=224 Identities=15% Similarity=0.109 Sum_probs=167.7
Q ss_pred CCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccccccc-cccCCcc
Q 014575 17 MCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWD-DVEHNGK 93 (422)
Q Consensus 17 m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~ 93 (422)
++.....+.+++.+. .+|.++. ++|++|++++|.+..+|. .+ .+++|++|++++|+++++.. .+..+++
T Consensus 30 C~~~~~c~~~~~~l~-------~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-------SIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ECTTSEEECCSTTCS-------SCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCeEeeCCCCCcc-------ccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 344555666655432 2555443 789999999999999988 45 88999999999999998754 4777888
Q ss_pred hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccc--cCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCE
Q 014575 94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA--GIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEV 169 (422)
Q Consensus 94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~ 169 (422)
|+++....+.+.. ..+..++.+++|++|++++|.. ..+|. .+.++++|++|++++|..++.++ .+..+++|++
T Consensus 102 L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 102 LEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp CCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 8888544444432 2334478899999999999854 45665 67789999999999986565554 5888999999
Q ss_pred EEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccc-cCCCCCcEEEccCCCCCCC--------------------
Q 014575 170 MYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSL-CKLNSLNFIYLRWCSSLKS-------------------- 227 (422)
Q Consensus 170 L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~Ls~c~~l~~-------------------- 227 (422)
|++++|.++.+ |..++.+++|++|++++|. ++.+|..+ ..+++|+.|++++|...+.
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 99999999866 7788999999999999965 56676653 4589999999999866553
Q ss_pred -----------CCcccCCCCCCCEEeccCccccccc
Q 014575 228 -----------LPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 228 -----------lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+|+.+..+++|+.|++++|.++.+|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~ 293 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCCccC
Confidence 2333456677777777777776554
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=9.5e-20 Score=188.92 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=184.0
Q ss_pred hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccc---cccc
Q 014575 12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQL---WDDV 88 (422)
Q Consensus 12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l---~~~~ 88 (422)
..+.++ +|+.|++++|.+. .+|.. ..++|++|++.++.+........+++|++|++++|.+... +..+
T Consensus 299 ~~~~~~-~L~~L~l~~n~~~-------~l~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 299 DFSYNF-GWQHLELVNCKFG-------QFPTL-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp BCCSCC-CCSEEEEESCBCS-------SCCBC-BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred hhhccC-CccEEeeccCccc-------ccCcc-cccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc
Confidence 446677 9999999998643 23431 2288999999999877655556788999999999999876 3456
Q ss_pred cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCC
Q 014575 89 EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP-EISSAGN 166 (422)
Q Consensus 89 ~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~ 166 (422)
..+++|+++....+.+... .+. +..+++|++|++++|...+..| ..+.++++|++|++++|......| .+..+++
T Consensus 370 ~~~~~L~~L~l~~n~l~~~--~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITM--SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HTCSCCCEEECCSCSEEEE--EEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cccCccCEEECCCCccccc--ccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 6777777773333222221 122 7789999999999997766655 457799999999999998877777 5889999
Q ss_pred cCEEEeeCccCc--ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575 167 IEVMYLNGTAIE--ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE 244 (422)
Q Consensus 167 L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~ 244 (422)
|++|+|++|.++ .+|..++.+++|+.|++++|+..+..|..+..+++|+.|++++|...+..|..+..+++|+.|+++
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 999999999997 689999999999999999988777779999999999999999988777777788999999999999
Q ss_pred Cccccc
Q 014575 245 GTAIRE 250 (422)
Q Consensus 245 ~n~l~~ 250 (422)
+|.++.
T Consensus 527 ~N~~~~ 532 (570)
T 2z63_A 527 TNPWDC 532 (570)
T ss_dssp SSCBCC
T ss_pred CCcccC
Confidence 999873
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=193.31 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=180.1
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCcccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSY-LVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQ 83 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~l-p~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~ 83 (422)
.+.+.+|.++++|++|++++|... ..+ |..+.. ++|++|++++|.+..+ |..| .+++|++|+|++|.+.+
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTP------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCC------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred ccChhHCcccccCeEEeCCCCCCc------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 466788999999999999997532 224 666777 9999999999999987 6666 88999999999999987
Q ss_pred -cccc--ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCC--CC---------------
Q 014575 84 -LWDD--VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRL--EF--------------- 143 (422)
Q Consensus 84 -l~~~--~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l--~~--------------- 143 (422)
.+.. +..+++|++|....+.+.... ++..++.+++|++|+|++|...+..|..+..+ ++
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred ccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 3333 778888888855544444433 22348899999999999987665544433322 22
Q ss_pred ---------------CCEEEeeCCCCCCCCcC-------------------------------------CCC--CCCcCE
Q 014575 144 ---------------LKELDLWGCSKLKTLPE-------------------------------------ISS--AGNIEV 169 (422)
Q Consensus 144 ---------------L~~L~Ls~~~~l~~~p~-------------------------------------~~~--l~~L~~ 169 (422)
|+.|++++|......|. +.. .++|+.
T Consensus 191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~ 270 (844)
T 3j0a_A 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270 (844)
T ss_dssp CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence 66666666643332221 111 257888
Q ss_pred EEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccc
Q 014575 170 MYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248 (422)
Q Consensus 170 L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l 248 (422)
|+|++|.++.+ |..+..+++|+.|+|++|+..+..|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.+
T Consensus 271 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 350 (844)
T 3j0a_A 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350 (844)
T ss_dssp EECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC
T ss_pred EECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC
Confidence 88888888765 45678899999999999877777777889999999999999877777788899999999999999998
Q ss_pred ccccc
Q 014575 249 REVYF 253 (422)
Q Consensus 249 ~~lp~ 253 (422)
..++.
T Consensus 351 ~~~~~ 355 (844)
T 3j0a_A 351 AIIQD 355 (844)
T ss_dssp CCCCS
T ss_pred CccCh
Confidence 87764
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.6e-18 Score=161.73 Aligned_cols=179 Identities=21% Similarity=0.230 Sum_probs=148.1
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
..++.++.+++.++.+|..+ +++|++|++++|++..++... +..+++|++|+|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~-------------------------~~~l~~L~~L~l~ 69 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKA-------------------------FHRLTKLRLLYLN 69 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTS-------------------------SSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHH-------------------------hcCCCCCCEEECC
Confidence 56789999999999999877 468999999999998775432 6678899999999
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSL 204 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l 204 (422)
+|......+..+.++++|++|++++|......+ .+..+++|++|+|++|.++.+|. .++.+++|++|++++|. +..+
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 148 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSL 148 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCcc
Confidence 986554334445789999999999988655444 47889999999999999998876 46899999999999975 4455
Q ss_pred cc-cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 205 PS-SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 205 p~-~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
|. .+..+++|+.|++++|...+..+..+..+++|+.|++++|.++.+|
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 54 4789999999999998666655566889999999999999998765
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=5.9e-19 Score=166.46 Aligned_cols=186 Identities=17% Similarity=0.101 Sum_probs=150.6
Q ss_pred ccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcC
Q 014575 40 YLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHL 117 (422)
Q Consensus 40 lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l 117 (422)
+|..+. .+|++|++++|.+..+|. .| .+++|++|++++|.+..+.... +..+
T Consensus 22 ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------~~~l 75 (276)
T 2z62_A 22 IPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-------------------------YQSL 75 (276)
T ss_dssp CCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-------------------------TTTC
T ss_pred cCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-------------------------ccCC
Confidence 454333 679999999999998887 44 7889999999999988765432 5678
Q ss_pred CCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcc--cCccccCCCCCCEEe
Q 014575 118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEE--LPSSIECLSRLSALY 194 (422)
Q Consensus 118 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~ 194 (422)
++|++|+|++|...+..|..+.++++|++|++++|......+ .+..+++|++|++++|.++. +|..++.+++|+.|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 899999999998777777788899999999999998666555 58899999999999999986 788999999999999
Q ss_pred cCCCCCCCcccccccCCCCCc----EEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 195 LDNCKRLKSLPSSLCKLNSLN----FIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 195 L~~~~~l~~lp~~l~~l~~L~----~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+++|+..+..+..+..+++|+ .|++++|... .+|.......+|+.|++++|.++.+|
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccCCCcccEEECCCCceeecC
Confidence 999876555556666666666 8999997554 45554445568999999999998665
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=2.9e-18 Score=163.41 Aligned_cols=176 Identities=22% Similarity=0.262 Sum_probs=147.5
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
++++.+++.++.+..+|..+ +++++.|++++|.|..+.... +..+++|++|+|+
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~-------------------------~~~l~~L~~L~L~ 63 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLAT-------------------------LMPYTRLTQLNLD 63 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGG-------------------------GTTCTTCCEEECT
T ss_pred CCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHH-------------------------hhcCCCCCEEECC
Confidence 77999999999999999887 479999999999998764432 6678899999999
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSL 204 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l 204 (422)
+|. +..++.. ..+++|++|++++|... .+| .+..+++|+.|+|++|+|+.+|+ .+..+++|++|+|++|...+..
T Consensus 64 ~n~-l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 64 RAE-LTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp TSC-CCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCc-cCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 986 4555653 68999999999998754 566 58899999999999999999874 6899999999999997655444
Q ss_pred cccccCCCCCcEEEccCCCCCCCCCc-ccCCCCCCCEEeccCccccccc
Q 014575 205 PSSLCKLNSLNFIYLRWCSSLKSLPD-ELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 205 p~~l~~l~~L~~L~Ls~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+..+..+++|+.|+|++|.. ..+|. .+..+++|+.|++++|.++.+|
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred hhhcccccCCCEEECCCCcC-CccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 44578899999999999755 45555 5688999999999999998665
No 69
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=6.5e-20 Score=189.50 Aligned_cols=140 Identities=15% Similarity=0.104 Sum_probs=110.7
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCcccccccc-ccCCcc
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWDD-VEHNGK 93 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~ 93 (422)
++|+.|++++|.+.. ..|..+.. ++|++|++++|.+..+|. .| .+++|++|++++|++.+++.. +..+++
T Consensus 26 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITY------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCE------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCccCc------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 689999999987532 24566777 999999999999998875 45 889999999999999998765 788899
Q ss_pred hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc-CCCCC
Q 014575 94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP-EISSA 164 (422)
Q Consensus 94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l 164 (422)
|+++....+.+..... +..++.+++|++|++++|...+.+| ..+.++++|+.|++++|...+..| .+..+
T Consensus 100 L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp CCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred CcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 9988555554443322 2347899999999999998777776 578899999999999998776555 34443
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=2.1e-19 Score=181.97 Aligned_cols=214 Identities=26% Similarity=0.258 Sum_probs=116.2
Q ss_pred hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CC-------------eeEEEecCCCCCCCCCCCCCCCceEEEc
Q 014575 11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AE-------------VRYLHWYGYPLKSLPSNIHPEKLVSIEM 76 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~-------------Lr~L~l~~~~l~~lP~~~~~~~L~~L~L 76 (422)
|++|++|++|++|++++|.+.+. +|..+.. .+ +++|+++++.+..+|.. +++|++|++
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~------~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l 98 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERN------APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVA 98 (454)
T ss_dssp -------CCHHHHHHHHHHHHHT------SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEEC
T ss_pred ChhHhcccchhhhhccCCccccc------CCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEc
Confidence 45678888888888887654332 5665554 33 47788888877777762 467778888
Q ss_pred cCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC
Q 014575 77 PHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK 156 (422)
Q Consensus 77 ~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~ 156 (422)
++|.+++++... .+|+++....+.+...... .++|++|++++|... .+|. +.++++|++|++++|...
T Consensus 99 ~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~- 166 (454)
T 1jl5_A 99 SCNSLTELPELP---QSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK- 166 (454)
T ss_dssp CSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-
T ss_pred cCCcCCcccccc---CCCcEEECCCCccCcccCC------CCCCCEEECcCCCCC-CCcc-cCCCCCCCEEECCCCcCc-
Confidence 877777765432 3444442222222221111 145666666666433 3553 666666666666666433
Q ss_pred CCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCC
Q 014575 157 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE 236 (422)
Q Consensus 157 ~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~ 236 (422)
.+|... ++|++|++++|.++.+| .++.+++|+.|++++|. +..+|.. .++|+.|++++|.. ..+|+ ++.++
T Consensus 167 ~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l-~~lp~-~~~l~ 237 (454)
T 1jl5_A 167 KLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNIL-EELPE-LQNLP 237 (454)
T ss_dssp CCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCC-SSCCC-CTTCT
T ss_pred ccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcC-Ccccc-cCCCC
Confidence 344322 26666666666666665 45666666666666643 3334432 23555555555432 35553 55555
Q ss_pred CCCEEeccCcccccccc
Q 014575 237 ALDSLIAEGTAIREVYF 253 (422)
Q Consensus 237 ~L~~L~l~~n~l~~lp~ 253 (422)
+|+.|++++|.++.+|.
T Consensus 238 ~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 238 FLTTIYADNNLLKTLPD 254 (454)
T ss_dssp TCCEEECCSSCCSSCCS
T ss_pred CCCEEECCCCcCCcccc
Confidence 55555555555555443
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=9.4e-20 Score=175.36 Aligned_cols=183 Identities=15% Similarity=0.091 Sum_probs=140.5
Q ss_pred CCeeEEEecCCCCC-CCCCCC---CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcE
Q 014575 47 AEVRYLHWYGYPLK-SLPSNI---HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVN 122 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~-~lP~~~---~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~ 122 (422)
++|++|++++|.+. .+|..+ .+++|++|+|++|++.+.+..+. .+. ...+++|++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~l~---------------~~~~~~L~~ 153 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA------ELQ---------------QWLKPGLKV 153 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHH------HHH---------------TTCCTTCCE
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHH------HHH---------------HhhcCCCcE
Confidence 67888888888776 566653 57788888888888776632210 000 012378999
Q ss_pred EeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCC--c-CC--CCCCCcCEEEeeCccCcccC---c-cccCCCCCCEE
Q 014575 123 LNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTL--P-EI--SSAGNIEVMYLNGTAIEELP---S-SIECLSRLSAL 193 (422)
Q Consensus 123 L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--p-~~--~~l~~L~~L~L~~n~i~~lp---~-~i~~l~~L~~L 193 (422)
|+|++|...+..|..+.++++|++|++++|...+.. | .+ ..+++|++|+|++|.|+.+| . .+..+++|+.|
T Consensus 154 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp EEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred EEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 999999877777788999999999999999866542 2 34 88999999999999999544 3 34678999999
Q ss_pred ecCCCCCCCccc-ccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 194 YLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 194 ~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
++++|...+..| ..+..+++|+.|++++|.. +.+|..+. ++|+.|++++|+++.+|.
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCcc-Chhhhhcc--CCceEEECCCCCCCCChh
Confidence 999987666664 4466789999999999765 58888876 899999999999987765
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.6e-18 Score=160.00 Aligned_cols=180 Identities=18% Similarity=0.283 Sum_probs=123.5
Q ss_pred CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCc-cccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575 47 AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGN-IQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL 123 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~-l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L 123 (422)
.+|++|++++|.++.+|.. | .+++|++|++++|+ ++.+.... +..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-------------------------f~~l~~L~~L 85 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-------------------------FYNLSKVTHI 85 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-------------------------EESCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-------------------------cCCCcCCcEE
Confidence 5778888888888777763 4 67788888888886 77664421 4566777888
Q ss_pred eccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcC---EEEeeCc-cCcccCcc-ccCCCCCC-EEecC
Q 014575 124 NLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE---VMYLNGT-AIEELPSS-IECLSRLS-ALYLD 196 (422)
Q Consensus 124 ~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~---~L~L~~n-~i~~lp~~-i~~l~~L~-~L~L~ 196 (422)
++++|..+..+| ..+.++++|++|++++|.. ..+|.+..+++|+ .|++++| .++.+|.. +..+++|+ .|+++
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 887722344444 4566777888888887764 3466677777777 8888887 77777653 67777788 88887
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCCCCCCC-CcccCCC-CCCCEEeccCcccccccc
Q 014575 197 NCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSL-PDELGNL-EALDSLIAEGTAIREVYF 253 (422)
Q Consensus 197 ~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~l-p~~~~~l-~~L~~L~l~~n~l~~lp~ 253 (422)
+|. +..+|......++|+.|++++|..++.+ +..+..+ ++|+.|++++|.++.+|.
T Consensus 165 ~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 165 NNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp SCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred CCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 754 4466665444477888888877544455 3456777 778888888887776653
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=3.4e-18 Score=157.82 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=157.7
Q ss_pred CCCceEEEecCCCCCCCceeEEccC-CCCC-CCeeEEEecCCC-CCCCCCC-C-CCCCceEEEccC-CccccccccccCC
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLV-GPGF-AEVRYLHWYGYP-LKSLPSN-I-HPEKLVSIEMPH-GNIQQLWDDVEHN 91 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~-~l~~-~~Lr~L~l~~~~-l~~lP~~-~-~~~~L~~L~L~~-~~l~~l~~~~~~l 91 (422)
++|+.|++++|.+. .+|. .+.. ++|++|++++|. ++.+|.. | .+++|++|++++ |+++.++...
T Consensus 31 ~~l~~L~l~~n~l~-------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~--- 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA--- 100 (239)
T ss_dssp TTCCEEEEESCCCS-------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS---
T ss_pred CcccEEEEeCCcce-------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH---
Confidence 38999999998753 2444 5655 999999999997 9999874 5 889999999999 9998875432
Q ss_pred cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCC---EEEeeCCCCCCCCc--CCCCCCC
Q 014575 92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLK---ELDLWGCSKLKTLP--EISSAGN 166 (422)
Q Consensus 92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~---~L~Ls~~~~l~~~p--~~~~l~~ 166 (422)
+..+++|++|++++|.. ..+|. +..+++|+ .|++++|..++.+| .+..+++
T Consensus 101 ----------------------f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 101 ----------------------LKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp ----------------------EECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred ----------------------hCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence 66788999999999864 45887 88888888 99999994455555 3889999
Q ss_pred cC-EEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc-ccccCC-CCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575 167 IE-VMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP-SSLCKL-NSLNFIYLRWCSSLKSLPDELGNLEALDSLIA 243 (422)
Q Consensus 167 L~-~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l-~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l 243 (422)
|+ .|++++|.++.+|......++|+.|++++|..++.+| ..+..+ ++|+.|++++|+ +..+|.. .+++|+.|++
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIA 233 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEEC
T ss_pred ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeec
Confidence 99 9999999999999876566899999999986566775 457888 999999999964 5677765 6789999999
Q ss_pred cCc
Q 014575 244 EGT 246 (422)
Q Consensus 244 ~~n 246 (422)
+++
T Consensus 234 ~~~ 236 (239)
T 2xwt_C 234 RNT 236 (239)
T ss_dssp TTC
T ss_pred cCc
Confidence 876
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=169.08 Aligned_cols=183 Identities=15% Similarity=0.085 Sum_probs=112.2
Q ss_pred CCeeEEEecCCCCC-CCCCC---CCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcE
Q 014575 47 AEVRYLHWYGYPLK-SLPSN---IHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVN 122 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~-~lP~~---~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~ 122 (422)
++|++|++++|.+. ..|.. ..+++|++|+|++|.+....... .. ..+..+++|++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~------~~---------------~~~~~~~~L~~ 149 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL------AE---------------LQQWLKPGLKV 149 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH------HH---------------HHTTBCSCCCE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh------HH---------------HHhhhccCCCE
Confidence 56888888888876 34444 35678888888888887532110 00 00335666777
Q ss_pred EeccCCCCCccccccCCCCCCCCEEEeeCCCCCCC--Cc---CCCCCCCcCEEEeeCccCcccCcc----ccCCCCCCEE
Q 014575 123 LNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKT--LP---EISSAGNIEVMYLNGTAIEELPSS----IECLSRLSAL 193 (422)
Q Consensus 123 L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~p---~~~~l~~L~~L~L~~n~i~~lp~~----i~~l~~L~~L 193 (422)
|+|++|...+..|..+.++++|++|+|++|...+. ++ .++.+++|++|+|++|+++.+|.. ++.+++|++|
T Consensus 150 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 150 LSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp EEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSE
T ss_pred EEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEE
Confidence 77777666555556666677777777777654431 11 135566677777777777655442 3566677777
Q ss_pred ecCCCCCCCcccccccCC---CCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 194 YLDNCKRLKSLPSSLCKL---NSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 194 ~L~~~~~l~~lp~~l~~l---~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
+|++|...+..|..+..+ ++|++|++++|.. +.+|..+. ++|+.|++++|.++.+|.
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL-EQVPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC-CSCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCC-Cchhhhhc--CCCCEEECCCCcCCCCch
Confidence 777765555556555555 4677777766543 36666553 567777777777666554
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.9e-19 Score=173.57 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=180.7
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~ 86 (422)
.+.+.+|.++++|+.|++++|.+.+ .+. +.. ++|++|++++|.+..+|. .++|++|++++|++..+..
T Consensus 48 ~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~~n~l~~~~~ 116 (317)
T 3o53_A 48 QISAADLAPFTKLELLNLSSNVLYE-------TLD-LESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVSC 116 (317)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCEE-------EEE-ETTCTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCSEEEE
T ss_pred cCCHHHhhCCCcCCEEECCCCcCCc-------chh-hhhcCCCCEEECcCCccccccC---CCCcCEEECCCCccCCcCc
Confidence 4568899999999999999987532 121 555 899999999999988875 4799999999999998754
Q ss_pred cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCcCCCCCC
Q 014575 87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSAG 165 (422)
Q Consensus 87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p~~~~l~ 165 (422)
. .+++|+.+....+.+... .+..++.+++|++|++++|...+..|..+. .+++|++|++++|. +..+|....++
T Consensus 117 ~--~~~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~ 191 (317)
T 3o53_A 117 S--RGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFA 191 (317)
T ss_dssp C--CCSSCEEEECCSSCCCSG--GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCT
T ss_pred c--ccCCCCEEECCCCCCCCc--cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccccccc
Confidence 3 366777664443333332 222377889999999999987776666664 78999999999987 44557666789
Q ss_pred CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCC-CCCCcccCCCCCCCEEecc
Q 014575 166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSL-KSLPDELGNLEALDSLIAE 244 (422)
Q Consensus 166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l-~~lp~~~~~l~~L~~L~l~ 244 (422)
+|++|+|++|.++.+|+.+..+++|+.|++++| .+..+|..+..+++|+.|++++|+.. +.+|..+..+++|+.++++
T Consensus 192 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 999999999999999999999999999999996 56689999999999999999998887 6788888888889988887
Q ss_pred Cc
Q 014575 245 GT 246 (422)
Q Consensus 245 ~n 246 (422)
++
T Consensus 271 ~~ 272 (317)
T 3o53_A 271 TV 272 (317)
T ss_dssp HH
T ss_pred Cc
Confidence 54
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.7e-17 Score=159.29 Aligned_cols=173 Identities=20% Similarity=0.301 Sum_probs=148.2
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
++|++|++.++.+..+|....+++|++|++++|.+..+.. +..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---------------------------~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---------------------------LKNLTKITELELS 93 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---------------------------GTTCCSCCEEECC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---------------------------HccCCCCCEEEcc
Confidence 7899999999999999854488999999999999887532 4577889999999
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS 206 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 206 (422)
+|. +..+| .+..+++|+.|++++|.. ..++.+..+++|+.|++++|.++.+|. ++.+++|+.|++++|. +..++.
T Consensus 94 ~n~-l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~ 168 (308)
T 1h6u_A 94 GNP-LKNVS-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP 168 (308)
T ss_dssp SCC-CSCCG-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG
T ss_pred CCc-CCCch-hhcCCCCCCEEECCCCCC-CCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh
Confidence 986 55566 488999999999999874 557779999999999999999999887 8899999999999975 556766
Q ss_pred cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccccc
Q 014575 207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFF 254 (422)
Q Consensus 207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~f 254 (422)
+..+++|+.|++++|.. ..++. +..+++|+.|++++|.++.++.+
T Consensus 169 -l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~N~l~~~~~l 213 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKI-SDISP-LASLPNLIEVHLKNNQISDVSPL 213 (308)
T ss_dssp -GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECTTSCCCBCGGG
T ss_pred -hcCCCCCCEEECCCCcc-CcChh-hcCCCCCCEEEccCCccCccccc
Confidence 89999999999999755 45554 78899999999999999887653
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.5e-17 Score=174.35 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=34.6
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccc
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~ 86 (422)
++|+.|++++|.+. .+|. ..++|++|++++|.++.+|. .+++|++|++++|+|+.++.
T Consensus 61 ~~L~~L~L~~N~l~-------~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 61 AHITTLVIPDNNLT-------SLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp TTCSEEEECSCCCS-------CCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC
T ss_pred CCCcEEEecCCCCC-------CCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC
Confidence 46777777776543 1333 11566666666666666666 45666666666666666544
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=8.4e-18 Score=170.24 Aligned_cols=216 Identities=21% Similarity=0.140 Sum_probs=142.1
Q ss_pred CCeeeeeeChhhhhC----CCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEc
Q 014575 2 SRIKEIYLHPDTFTK----MCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEM 76 (422)
Q Consensus 2 s~~~~~~l~~~~f~~----m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L 76 (422)
++++.++++...+.. +.+|++|++++|.+.+ +| ++.. ++|++|++++|.+..+|... .+|++|++
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-------l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-------LP-ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-------CC-CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEEC
T ss_pred CCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-------Cc-cccCCCCCCEEECCCCcCCcCCCCc--CcccEEEC
Confidence 345566665555543 3478999998887542 34 4555 88888888888888877643 58888888
Q ss_pred cCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC
Q 014575 77 PHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK 156 (422)
Q Consensus 77 ~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~ 156 (422)
++|.+..++ .+..+++|+++....+.+..... .+++|+.|++++|... .+|.. +++|+.|++++|...+
T Consensus 223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSE
T ss_pred cCCcCCccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCccc-ccCcc---cCcCCEEECcCCccCc
Confidence 888888766 46777777777443333332211 2367888888887543 46652 4788888888876433
Q ss_pred CCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCC
Q 014575 157 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE 236 (422)
Q Consensus 157 ~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~ 236 (422)
+|.+. ++|+.|++++|.++.++.. .++|+.|++++|+ +..+|.. +++|+.|++++|. +..+|. .++
T Consensus 292 -l~~~~--~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N~-l~~lp~---~l~ 357 (454)
T 1jl5_A 292 -LSELP--PNLYYLNASSNEIRSLCDL---PPSLEELNVSNNK-LIELPAL---PPRLERLIASFNH-LAEVPE---LPQ 357 (454)
T ss_dssp -ESCCC--TTCCEEECCSSCCSEECCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCT
T ss_pred -ccCcC--CcCCEEECcCCcCCcccCC---cCcCCEEECCCCc-ccccccc---CCcCCEEECCCCc-cccccc---hhh
Confidence 44332 4777777777777766531 2467777777754 3446653 4677777777754 445666 356
Q ss_pred CCCEEeccCccccccc
Q 014575 237 ALDSLIAEGTAIREVY 252 (422)
Q Consensus 237 ~L~~L~l~~n~l~~lp 252 (422)
+|+.|++++|.++.+|
T Consensus 358 ~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFP 373 (454)
T ss_dssp TCCEEECCSSCCSSCC
T ss_pred hccEEECCCCCCCcCC
Confidence 7777777777777654
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.6e-17 Score=156.82 Aligned_cols=171 Identities=19% Similarity=0.241 Sum_probs=142.2
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
++|++|+++++.++.+|..-.+++|++|++++|++..+.. +..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---------------------------LANLKNLGWLFLD 98 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---------------------------GTTCTTCCEEECC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---------------------------cccCCCCCEEECC
Confidence 7889999999999988764478899999999998887532 4567889999999
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS 206 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 206 (422)
+|. +..+|. +..+++|++|++++|. +..++.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|. +..++.
T Consensus 99 ~n~-l~~~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~ 173 (291)
T 1h6t_A 99 ENK-VKDLSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP 173 (291)
T ss_dssp SSC-CCCGGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG
T ss_pred CCc-CCCChh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh
Confidence 985 445665 8899999999999986 45568888899999999999999988 578899999999999975 455555
Q ss_pred cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+..+++|+.|++++|. +..+|. +..+++|+.|++++|.+...|
T Consensus 174 -l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred -hcCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcCCcccCCc
Confidence 8899999999999974 555664 888999999999999887655
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=9.1e-17 Score=149.46 Aligned_cols=176 Identities=19% Similarity=0.130 Sum_probs=143.5
Q ss_pred CCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchHH
Q 014575 19 KLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQ 96 (422)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 96 (422)
+.+.++++++.+. .+|.++. .+|+.|++++|.+..++.. | .+++|++|+|++|.|+.+....
T Consensus 15 ~~~~l~~~~~~l~-------~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------- 78 (251)
T 3m19_A 15 GKKEVDCQGKSLD-------SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-------- 78 (251)
T ss_dssp GGTEEECTTCCCS-------SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------
T ss_pred CCeEEecCCCCcc-------ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH--------
Confidence 4567777776532 2554443 7899999999999988875 4 7899999999999998765432
Q ss_pred HHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCc
Q 014575 97 IISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGT 175 (422)
Q Consensus 97 l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n 175 (422)
+..+++|++|+|++|...+..+..+..+++|++|+|++|......+. +..+++|++|+|++|
T Consensus 79 -----------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 79 -----------------FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp -----------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -----------------hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 56788999999999977666666678999999999999976554443 788999999999999
Q ss_pred cCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575 176 AIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS 227 (422)
Q Consensus 176 ~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~ 227 (422)
+|+.+|. .++.+++|+.|+|++|...+..|..+..+++|+.|++++|+....
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999987 689999999999999766655555788999999999999876544
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.3e-16 Score=167.14 Aligned_cols=201 Identities=21% Similarity=0.183 Sum_probs=121.6
Q ss_pred CCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHH
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI 97 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l 97 (422)
.+++.|+++++.+. .+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+|+.++. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-------~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-------TLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-------CCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcC-------ccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 46999999998753 3565444 899999999999999998 57899999999999998876 56677766
Q ss_pred HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCC----------------
Q 014575 98 ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEI---------------- 161 (422)
Q Consensus 98 ~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~---------------- 161 (422)
....+.+..... .+++|+.|++++|. +..+|.. +++|++|++++|... .+|..
T Consensus 107 ~Ls~N~l~~l~~------~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 107 SIFSNPLTHLPA------LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp EECSCCCCCCCC------CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC
T ss_pred ECcCCcCCCCCC------CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCC
Confidence 443333333221 34556666666653 3345542 356666666665432 23321
Q ss_pred --CCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCC
Q 014575 162 --SSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALD 239 (422)
Q Consensus 162 --~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~ 239 (422)
..+++|+.|+|++|.|+.+|.. +++|+.|++++| .+..+|.. +++|+.|++++| .+..+| ..+++|+
T Consensus 176 l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~L~ 244 (622)
T 3g06_A 176 LPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLP---VLPSELK 244 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCC
T ss_pred CcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCCEEEccCC-ccCcCC---CCCCcCc
Confidence 1124555555555555555542 234444555443 23334432 355666666664 333455 3345666
Q ss_pred EEeccCcccccccc
Q 014575 240 SLIAEGTAIREVYF 253 (422)
Q Consensus 240 ~L~l~~n~l~~lp~ 253 (422)
.|++++|.|+.+|.
T Consensus 245 ~L~Ls~N~L~~lp~ 258 (622)
T 3g06_A 245 ELMVSGNRLTSLPM 258 (622)
T ss_dssp EEECCSSCCSCCCC
T ss_pred EEECCCCCCCcCCc
Confidence 66666666666654
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=4.5e-20 Score=182.70 Aligned_cols=239 Identities=10% Similarity=0.071 Sum_probs=145.7
Q ss_pred hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCC----CCC--------CCCCceEEEcc
Q 014575 11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLP----SNI--------HPEKLVSIEMP 77 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP----~~~--------~~~~L~~L~L~ 77 (422)
.+++.++++|+.|+|++|.+... ....++..+.. ++|++|++++|.+..+. ..+ .+++|++|+|+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTE--AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHH--HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHH--HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45678889999999998763311 00113444555 88999999988766443 222 56889999999
Q ss_pred CCcccc-----ccccccCCcchHHHHHhhccCCCC--CCcchhhhcC---------CCCcEEeccCCCCC-cccc---cc
Q 014575 78 HGNIQQ-----LWDDVEHNGKLKQIISRACNFFTK--SPNHSLTLHL---------DKLVNLNLNNCKSL-RILP---AG 137 (422)
Q Consensus 78 ~~~l~~-----l~~~~~~l~~L~~l~~~~~~~~~~--~~~~~li~~l---------~~L~~L~L~~~~~l-~~lp---~~ 137 (422)
+|.+.. ++..+..+++|++|....+.+.+. ......+..+ ++|++|+|++|... ..+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 998876 333444455555442222211100 0011112223 67777777777544 3344 34
Q ss_pred CCCCCCCCEEEeeCCCCCC-----CCc-CCCCCCCcCEEEeeCccC-----cccCccccCCCCCCEEecCCCCCCCc---
Q 014575 138 IFRLEFLKELDLWGCSKLK-----TLP-EISSAGNIEVMYLNGTAI-----EELPSSIECLSRLSALYLDNCKRLKS--- 203 (422)
Q Consensus 138 i~~l~~L~~L~Ls~~~~l~-----~~p-~~~~l~~L~~L~L~~n~i-----~~lp~~i~~l~~L~~L~L~~~~~l~~--- 203 (422)
+..+++|++|++++|.... ..| .+..+++|+.|+|++|.+ ..+|..+..+++|+.|+|++|.....
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 5566777777777775431 234 566677777777777777 45666777777777777777654433
Q ss_pred -ccccc--cCCCCCcEEEccCCCCCC----CCCccc-CCCCCCCEEeccCcccccc
Q 014575 204 -LPSSL--CKLNSLNFIYLRWCSSLK----SLPDEL-GNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 204 -lp~~l--~~l~~L~~L~Ls~c~~l~----~lp~~~-~~l~~L~~L~l~~n~l~~l 251 (422)
+|..+ +.+++|+.|+|++|.... .+|..+ .++++|+.|++++|.++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 45555 337777777777765554 366665 5567777777777776643
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=5.3e-17 Score=146.52 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=49.9
Q ss_pred hcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCE
Q 014575 115 LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSA 192 (422)
Q Consensus 115 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~ 192 (422)
+.+++|++|++++|...+..+..+.++++|++|++++|......+. +..+++|++|+|++|.|+.+|.. +..+++|+.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 3444555555555433322222234455555555555543322222 44555555555555555544443 345555555
Q ss_pred EecCCCCCCCcccccccCCCCCcEEEccCC
Q 014575 193 LYLDNCKRLKSLPSSLCKLNSLNFIYLRWC 222 (422)
Q Consensus 193 L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c 222 (422)
|++++|...+..+..+..+++|+.|++++|
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCccceeCHHHhccCCCccEEEecCC
Confidence 555554332222222444555555555554
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=8.6e-17 Score=166.69 Aligned_cols=186 Identities=19% Similarity=0.249 Sum_probs=150.0
Q ss_pred hhhhhCCC-----CCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccc
Q 014575 11 PDTFTKMC-----KLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLW 85 (422)
Q Consensus 11 ~~~f~~m~-----~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~ 85 (422)
+.+|.+++ +|+.|++++|.+.+ +|..+. ++|++|++++|.++.+| . .+++|+.|++++|+|++++
T Consensus 47 ~~~~~~l~~C~~~~L~~L~Ls~n~L~~-------lp~~l~-~~L~~L~Ls~N~l~~ip-~-~l~~L~~L~Ls~N~l~~ip 116 (571)
T 3cvr_A 47 NEAVSLLKECLINQFSELQLNRLNLSS-------LPDNLP-PQITVLEITQNALISLP-E-LPASLEYLDACDNRLSTLP 116 (571)
T ss_dssp HHHHHHHHHHHHTTCSEEECCSSCCSC-------CCSCCC-TTCSEEECCSSCCSCCC-C-CCTTCCEEECCSSCCSCCC
T ss_pred cchhhhccccccCCccEEEeCCCCCCc-------cCHhHc-CCCCEEECcCCCCcccc-c-ccCCCCEEEccCCCCCCcc
Confidence 34677776 99999999987542 555443 78999999999999999 3 4689999999999998764
Q ss_pred ccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCC
Q 014575 86 DDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG 165 (422)
Q Consensus 86 ~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~ 165 (422)
. +. . +|++|+|++|...+ +|. .+++|+.|++++|... .+|. .++
T Consensus 117 ~-l~--------------------------~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~ 160 (571)
T 3cvr_A 117 E-LP--------------------------A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE--LPT 160 (571)
T ss_dssp C-CC--------------------------T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC--CCT
T ss_pred h-hh--------------------------c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC--cCC
Confidence 3 21 1 68999999986544 777 6899999999998755 4776 577
Q ss_pred CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCC-------cEEEccCCCCCCCCCcccCCCCCC
Q 014575 166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSL-------NFIYLRWCSSLKSLPDELGNLEAL 238 (422)
Q Consensus 166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L-------~~L~Ls~c~~l~~lp~~~~~l~~L 238 (422)
+|+.|+|++|.|+.+|. +. ++|+.|+|++| .+..+|. +.. +| +.|+|++| .+..+|..+..+++|
T Consensus 161 ~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPT 232 (571)
T ss_dssp TCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred CcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence 99999999999999998 65 89999999996 4668888 654 77 99999996 556799988889999
Q ss_pred CEEeccCccccc
Q 014575 239 DSLIAEGTAIRE 250 (422)
Q Consensus 239 ~~L~l~~n~l~~ 250 (422)
+.|++++|.++.
T Consensus 233 ~~L~L~~N~l~~ 244 (571)
T 3cvr_A 233 CTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSSCCH
T ss_pred CEEEeeCCcCCC
Confidence 999999999874
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=159.44 Aligned_cols=198 Identities=16% Similarity=0.133 Sum_probs=149.6
Q ss_pred CCCCCceEEEecCCCCCCCceeEEccCCC--CC-CCeeEEEecCCCCCCCCCC------CCCCCceEEEccCCccccccc
Q 014575 16 KMCKLRFLKFYNSKDDGENKCKVSYLVGP--GF-AEVRYLHWYGYPLKSLPSN------IHPEKLVSIEMPHGNIQQLWD 86 (422)
Q Consensus 16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l--~~-~~Lr~L~l~~~~l~~lP~~------~~~~~L~~L~L~~~~l~~l~~ 86 (422)
.+++|+.|++++|.+.+. .|..+ .. ++|++|++++|.+...... ..+++|++|+|++|++..++.
T Consensus 89 ~~~~L~~L~l~~n~l~~~------~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGT------MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp HHSCCCEEEEESCCCBSC------CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred ccCceeEEEeeCCEeccc------hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence 456799999999876543 55555 44 8899999999988753221 157899999999999877644
Q ss_pred cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcc--cc--ccCCCCCCCCEEEeeCCCCCCCCcC--
Q 014575 87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI--LP--AGIFRLEFLKELDLWGCSKLKTLPE-- 160 (422)
Q Consensus 87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~Ls~~~~l~~~p~-- 160 (422)
.. ++.+++|++|+|++|...+. ++ ..+..+++|++|++++|.. +.+|.
T Consensus 163 ~~-------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 216 (310)
T 4glp_A 163 EQ-------------------------VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVC 216 (310)
T ss_dssp TS-------------------------CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHH
T ss_pred HH-------------------------hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHH
Confidence 32 56778899999999876543 32 2235788999999999864 44443
Q ss_pred ---CCCCCCcCEEEeeCccCccc-CccccCC---CCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccC
Q 014575 161 ---ISSAGNIEVMYLNGTAIEEL-PSSIECL---SRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELG 233 (422)
Q Consensus 161 ---~~~l~~L~~L~L~~n~i~~l-p~~i~~l---~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~ 233 (422)
+..+++|++|+|++|.++.+ |..+..+ ++|++|+|++|. +..+|..+. ++|+.|+|++|+.. .+|. +.
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~ 291 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRLN-RAPQ-PD 291 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCCC-SCCC-TT
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcCC-CCch-hh
Confidence 46778999999999999876 7777766 699999999965 558888764 79999999987554 4555 67
Q ss_pred CCCCCCEEeccCccccc
Q 014575 234 NLEALDSLIAEGTAIRE 250 (422)
Q Consensus 234 ~l~~L~~L~l~~n~l~~ 250 (422)
.+++|+.|++++|+++.
T Consensus 292 ~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSCEECSSTTTSC
T ss_pred hCCCccEEECcCCCCCC
Confidence 78999999999998863
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=7.1e-17 Score=168.78 Aligned_cols=172 Identities=19% Similarity=0.210 Sum_probs=129.1
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
.+|++|+++++.+..+|..-.+++|+.|+|++|.|..+++ +..+++|+.|+|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---------------------------l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---------------------------LTNLKNLGWLFLD 95 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---------------------------GGGCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---------------------------hccCCCCCEEECc
Confidence 7788888888888888754477888888888888776532 4467778888888
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS 206 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 206 (422)
+|. +..+| .+..+++|+.|+|++|.. ..++.+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|...+ ++.
T Consensus 96 ~N~-l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~ 170 (605)
T 1m9s_A 96 ENK-IKDLS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP 170 (605)
T ss_dssp SSC-CCCCT-TSTTCTTCCEEECTTSCC-CCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG
T ss_pred CCC-CCCCh-hhccCCCCCEEEecCCCC-CCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh
Confidence 874 44455 477888888888888764 4467788888888888888888877 567888888888888865444 433
Q ss_pred cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575 207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
+..+++|+.|+|++|.. ..+| .+..+++|+.|+|++|.+...|.
T Consensus 171 -l~~l~~L~~L~Ls~N~i-~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHI-SDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -GTTCTTCCEEECCSSCC-CBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred -hccCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 77888888888888644 4454 47778888888888888776553
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=5.2e-17 Score=169.82 Aligned_cols=229 Identities=17% Similarity=0.172 Sum_probs=155.2
Q ss_pred hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccc---------
Q 014575 12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQ--------- 82 (422)
Q Consensus 12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~--------- 82 (422)
..|..+.+|+.|++.++.+... + ......|+.+.+.++.....+....+++|+.|++++|.+.
T Consensus 322 ~~~~~~~~L~~L~l~~~~~~~~-------~-~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 322 KDFSYNFGWQHLELVNCKFGQF-------P-TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp GGGGSCCCCSEEEEESCEESSC-------C-CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred cccccchhhhhhhcccccccCc-------C-cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch
Confidence 3567778899999888653211 0 0001455566666555555444445555666665555543
Q ss_pred -----------------cccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCC
Q 014575 83 -----------------QLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLK 145 (422)
Q Consensus 83 -----------------~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 145 (422)
.....+..+++|+.+.....+...... ...+..+++++.++++.|......|..+..+++|+
T Consensus 394 ~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~ 472 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472 (635)
T ss_dssp HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hhhhhhhhhhccccccccccccccccccccchhhhhcccccccc-ccccccccccccccccccccccccccccccchhhh
Confidence 333333344444433221111111111 12266788888999988877777777777889999
Q ss_pred EEEeeCCCCCCC-Cc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCC
Q 014575 146 ELDLWGCSKLKT-LP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWC 222 (422)
Q Consensus 146 ~L~Ls~~~~l~~-~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c 222 (422)
.|++++|..... .| .+..+++|++|+|++|+|+.+ |..++.+++|++|+|++|+..+..|..+..+++|+.|+|++|
T Consensus 473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 999999875544 34 478888999999999999876 456888999999999997665555667888999999999998
Q ss_pred CCCCCCCcccCCC-CCCCEEeccCcccc
Q 014575 223 SSLKSLPDELGNL-EALDSLIAEGTAIR 249 (422)
Q Consensus 223 ~~l~~lp~~~~~l-~~L~~L~l~~n~l~ 249 (422)
+..+..|+.+..+ ++|+.|++++|++.
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 8888888888887 67999999998875
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.3e-16 Score=143.95 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=133.2
Q ss_pred CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEe
Q 014575 47 AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN 124 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~ 124 (422)
++|++|++++|.+..+|... .+++|++|++++|+++.++... +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------~~~l~~L~~L~ 82 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-------------------------FNKLTSLTYLN 82 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------------------------TTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh-------------------------cCCCCCcCEEE
Confidence 78999999999999888764 7899999999999988765432 56788999999
Q ss_pred ccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCC
Q 014575 125 LNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLK 202 (422)
Q Consensus 125 L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~ 202 (422)
|++|...+..+..+.++++|++|++++|......+. +..+++|+.|+|++|.++.+|.. +..+++|+.|++++|...
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-
Confidence 999976655555567999999999999976655453 78999999999999999988875 788999999999998544
Q ss_pred cccccccCCCCCcEEEccCCCCCCCCCcccCCCCC
Q 014575 203 SLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA 237 (422)
Q Consensus 203 ~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~ 237 (422)
+.+++|+.|+++.|...+.+|+.++.++.
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 35668999999999999999998887654
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=3.2e-18 Score=165.66 Aligned_cols=198 Identities=19% Similarity=0.243 Sum_probs=120.6
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccc--ccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575 47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQ--LWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL 123 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L 123 (422)
.+++.|++.++.+...+..+ .+++|++|++++|.+.. ++..+..+++|+++....+.+.+ ..+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCEE
Confidence 34455555554444333222 44455555555554432 22233333444433221111100 112236677888888
Q ss_pred eccCCCCCc--cccccCCCCCCCCEEEeeCCCCCCC--Cc-CCCCCC-CcCEEEeeCcc--C--cccCccccCCCCCCEE
Q 014575 124 NLNNCKSLR--ILPAGIFRLEFLKELDLWGCSKLKT--LP-EISSAG-NIEVMYLNGTA--I--EELPSSIECLSRLSAL 193 (422)
Q Consensus 124 ~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~~--~p-~~~~l~-~L~~L~L~~n~--i--~~lp~~i~~l~~L~~L 193 (422)
++++|..++ .++..+.++++|++|++++|..+.. ++ .+..++ +|++|+|++|. + ..+|..+..+++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 888885444 3666677788888888888833332 34 366677 88888888884 4 3677777888888888
Q ss_pred ecCCCC-CCCcccccccCCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEeccCc
Q 014575 194 YLDNCK-RLKSLPSSLCKLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAEGT 246 (422)
Q Consensus 194 ~L~~~~-~l~~lp~~l~~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~~n 246 (422)
++++|. .....+..+..+++|+.|++++|.... .....++.+++|+.|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 888887 344666678888888888888885221 11124677888888888888
No 90
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.6e-16 Score=156.03 Aligned_cols=173 Identities=23% Similarity=0.292 Sum_probs=139.2
Q ss_pred eeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhh-cCCCCcEEeccC
Q 014575 49 VRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL-HLDKLVNLNLNN 127 (422)
Q Consensus 49 Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~-~l~~L~~L~L~~ 127 (422)
-+.++..++.++.+|..+ ++.++.|+|++|+|+.++... +. .+++|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~-------------------------~~~~l~~L~~L~L~~ 73 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEW-------------------------TPTRLTNLHSLLLSH 73 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTS-------------------------SSSCCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhh-------------------------hhhcccccCEEECCC
Confidence 358899999999999876 457999999999999876542 33 678899999999
Q ss_pred CCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCccc
Q 014575 128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLP 205 (422)
Q Consensus 128 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp 205 (422)
|...+..|..+.++++|+.|+|++|......+ .+..+++|+.|+|++|.|+.+ |..+..+++|+.|+|++| .+..+|
T Consensus 74 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 152 (361)
T 2xot_A 74 NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFP 152 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCC
T ss_pred CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeC
Confidence 97666666778899999999999987554444 488999999999999999977 567899999999999995 566677
Q ss_pred ccc----cCCCCCcEEEccCCCCCCCCC-cccCCCCC--CCEEeccCcccc
Q 014575 206 SSL----CKLNSLNFIYLRWCSSLKSLP-DELGNLEA--LDSLIAEGTAIR 249 (422)
Q Consensus 206 ~~l----~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~--L~~L~l~~n~l~ 249 (422)
..+ ..+++|+.|+|++|.. ..+| ..+..++. |+.|++++|.+.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCC-CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCC-CccCHHHhhhccHhhcceEEecCCCcc
Confidence 765 5799999999999654 4555 45666665 478999999876
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.2e-16 Score=141.37 Aligned_cols=152 Identities=16% Similarity=0.212 Sum_probs=117.0
Q ss_pred CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCE
Q 014575 67 HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKE 146 (422)
Q Consensus 67 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 146 (422)
.+++|++|++++|.+..++ + +..+++|++|++++| ....++ .+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~--------------------------l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~ 92 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-G--------------------------IEYAHNIKDLTINNI-HATNYN-PISGLSNLER 92 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-T--------------------------GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCE
T ss_pred hcCCccEEeccCCCccChH-H--------------------------HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCE
Confidence 4567888888888887654 2 456778899999988 444554 4778899999
Q ss_pred EEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcc-cCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCC
Q 014575 147 LDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEE-LPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSS 224 (422)
Q Consensus 147 L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~ 224 (422)
|++++|......| .++.+++|++|+|++|.++. .|..++.+++|++|++++|..++.+| .+..+++|+.|++++|..
T Consensus 93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC
T ss_pred EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC
Confidence 9999987665334 68888899999999999884 67778889999999999977677887 588889999999998754
Q ss_pred CCCCCcccCCCCCCCEEeccCccccc
Q 014575 225 LKSLPDELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 225 l~~lp~~~~~l~~L~~L~l~~n~l~~ 250 (422)
..++ .+..+++|+.|++++|++..
T Consensus 172 -~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 172 -HDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CCCT-TGGGCSSCCEEEECBC----
T ss_pred -cChH-HhccCCCCCEEEeeCcccCC
Confidence 4455 67788899999999988753
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.9e-16 Score=150.77 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=144.2
Q ss_pred hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575 13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN 91 (422)
Q Consensus 13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l 91 (422)
.+.++++|+.|++++|.+.. + .++.. ++|++|++++|.+..++.-..+++|++|++++|.++.+..
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~-------~-~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----- 107 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS-------V-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS----- 107 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC-------C-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-----
T ss_pred chhhcCcccEEEccCCCccc-------C-hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-----
Confidence 35678899999999986431 2 34555 9999999999999999883389999999999999887521
Q ss_pred cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEE
Q 014575 92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 171 (422)
Q Consensus 92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~ 171 (422)
+..+++|++|++++|.. ..++ .+..+++|+.|++++|... .++.+..+++|+.|+
T Consensus 108 ----------------------l~~l~~L~~L~L~~n~i-~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 108 ----------------------LKDLKKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLS 162 (291)
T ss_dssp ----------------------GTTCTTCCEEECTTSCC-CCCG-GGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEE
T ss_pred ----------------------hccCCCCCEEECCCCcC-CCCh-hhcCCCCCCEEEccCCcCC-cchhhccCCCCCEEE
Confidence 56788999999999864 4455 4889999999999998754 458899999999999
Q ss_pred eeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCC
Q 014575 172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK 226 (422)
Q Consensus 172 L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~ 226 (422)
|++|.++.+++ +..+++|+.|++++| .+..+|. +..+++|+.|++++|+...
T Consensus 163 L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 163 LEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred ccCCccccchh-hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCcccC
Confidence 99999999887 999999999999996 5666776 8999999999999976543
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=8.3e-16 Score=140.28 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=69.0
Q ss_pred CCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcE
Q 014575 139 FRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNF 216 (422)
Q Consensus 139 ~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 216 (422)
.++++|+.|+|++|......+ .+..+++|++|+|++|.|+.+|.. +..+++|++|+|++|...+..|..+..+++|+.
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 344445555555444333333 355555666666666666655543 566666777777766555555666677777777
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 217 IYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 217 L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
|+|++|...+..|..+..+++|+.|++++|.+.
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777776665655777777777888888887765
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.4e-16 Score=149.55 Aligned_cols=170 Identities=22% Similarity=0.212 Sum_probs=129.8
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
.++..+++.++.+..++....+++|++|++++|.|+.+. + +..+++|++|+|+
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~--------------------------l~~l~~L~~L~L~ 71 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G--------------------------MQFFTNLKELHLS 71 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T--------------------------GGGCTTCCEEECC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H--------------------------HhhCCCCCEEECC
Confidence 455666677777777773336778888888888877653 1 4567788889998
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS 206 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 206 (422)
+|. +..+|. +.++++|+.|++++|. ++.+|.+.. ++|+.|+|++|.++.+| .+..+++|+.|++++|+ +..+|
T Consensus 72 ~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~- 144 (263)
T 1xeu_A 72 HNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV- 144 (263)
T ss_dssp SSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-
T ss_pred CCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-
Confidence 885 444555 7788899999999876 445665555 78999999999998876 58889999999999865 55666
Q ss_pred cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
.+..+++|+.|++++|...+. ..+..+++|+.|++++|.+...|
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 588899999999998765544 66788899999999999887654
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=1.5e-15 Score=139.46 Aligned_cols=128 Identities=23% Similarity=0.249 Sum_probs=63.3
Q ss_pred CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-C-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecC
Q 014575 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-E-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLD 196 (422)
Q Consensus 120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~ 196 (422)
|++|+|++|...+..|..+.++++|+.|+|++|.. +.+| . +..+++|+.|+|++|.|+.+|.. +..+++|+.|+|+
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 44444444443333344444444455555555443 2222 1 34455555555555555555433 3455555555555
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 197 NCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 197 ~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
+|+ +..+|..+..+++|+.|+|++|...+..+..+..+++|+.|++++|.+.
T Consensus 121 ~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 121 CNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 532 3355555555555666666554333322334555666666666666554
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=1.3e-15 Score=138.93 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=61.0
Q ss_pred CCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCc
Q 014575 138 IFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLN 215 (422)
Q Consensus 138 i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 215 (422)
+..+++|+.|+|++|......| .+..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|...+..|..+..+++|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 3344444444444443333323 344455555555555555555543 34555566666665544444455566666666
Q ss_pred EEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 216 FIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 216 ~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
.|+|++|...+..+..+..+++|+.|++++|.+.
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6666665544444445666777777777777664
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=6.5e-17 Score=158.05 Aligned_cols=209 Identities=18% Similarity=0.165 Sum_probs=140.3
Q ss_pred ccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCcccc-ccc-cccCCcchHHHHHh-hccCCCCCCcchhh
Q 014575 40 YLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQ-LWD-DVEHNGKLKQIISR-ACNFFTKSPNHSLT 114 (422)
Q Consensus 40 lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~-l~~-~~~~l~~L~~l~~~-~~~~~~~~~~~~li 114 (422)
+|.++. .++++|++++|.++.+|.. | .+++|++|+|++|++.+ ++. .+..+++++.+... .+++.. ..+..+
T Consensus 24 iP~~l~-~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~--l~~~~f 100 (350)
T 4ay9_X 24 IPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY--INPEAF 100 (350)
T ss_dssp CCTTCC-TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE--ECTTSB
T ss_pred cCcCcC-CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc--cCchhh
Confidence 555442 6788888888888888875 4 78888888888888755 333 23455555443111 111111 122336
Q ss_pred hcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCC-CCcCEEEeeCccCcccCccccCCCCCC
Q 014575 115 LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSA-GNIEVMYLNGTAIEELPSSIECLSRLS 191 (422)
Q Consensus 115 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l-~~L~~L~L~~n~i~~lp~~i~~l~~L~ 191 (422)
..+++|++|++++|......+..+....++..|++.++..+..+| .+..+ ..++.|+|++|+|+++|..+....+|+
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence 778888888888876554444445566777888888877676666 34444 357888888888888888777778888
Q ss_pred EEecCCCCCCCccccc-ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccC-ccccccccc
Q 014575 192 ALYLDNCKRLKSLPSS-LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG-TAIREVYFF 254 (422)
Q Consensus 192 ~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~-n~l~~lp~f 254 (422)
.|++.+++.++.+|.. +..+++|+.|+|++| .+..+|.. .+.+|+.|.+.+ +.++.+|.+
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCc
Confidence 8888887888888864 578888888888885 56677653 245566665544 356666653
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=1.2e-15 Score=139.33 Aligned_cols=127 Identities=22% Similarity=0.249 Sum_probs=70.3
Q ss_pred EEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCC
Q 014575 122 NLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCK 199 (422)
Q Consensus 122 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~ 199 (422)
.++++++ .+..+|..+. ++|+.|++++|......+ .+..+++|+.|+|++|.|+.+ |..+..+++|++|+|++|.
T Consensus 15 ~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4455543 3445554442 456666666655433333 355566666666666666654 4456666666666666643
Q ss_pred CCCccccc-ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 200 RLKSLPSS-LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 200 ~l~~lp~~-l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+..+|.. +..+++|+.|+|++|...+..|..+..+++|+.|++++|.++.+|
T Consensus 92 -l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 3344433 455666666666665555555555666666666666666665554
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=2.4e-16 Score=164.84 Aligned_cols=172 Identities=19% Similarity=0.235 Sum_probs=141.3
Q ss_pred hhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCc
Q 014575 14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG 92 (422)
Q Consensus 14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~ 92 (422)
+..|++|+.|++++|.+.. ++ ++.. ++|++|++++|.+..+|....+++|+.|+|++|.|..++ .
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-------l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~----- 104 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-------VQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-S----- 104 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-------CT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-T-----
T ss_pred hhcCCCCCEEECcCCCCCC-------Ch-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-h-----
Confidence 5678899999999876431 23 4555 999999999999999988448999999999999988642 1
Q ss_pred chHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEe
Q 014575 93 KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 172 (422)
Q Consensus 93 ~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L 172 (422)
+..+++|+.|+|++|... .++. +..+++|+.|+|++|... .++.+..+++|+.|+|
T Consensus 105 ---------------------l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 105 ---------------------LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSL 160 (605)
T ss_dssp ---------------------STTCTTCCEEECTTSCCC-CCGG-GGGCTTCSEEECCSSCCC-CCGGGGSCTTCSEEEC
T ss_pred ---------------------hccCCCCCEEEecCCCCC-CCcc-ccCCCccCEEECCCCccC-CchhhcccCCCCEEEC
Confidence 557888999999998644 4554 778999999999998754 4588899999999999
Q ss_pred eCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCC
Q 014575 173 NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK 226 (422)
Q Consensus 173 ~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~ 226 (422)
++|.|+.+++ +..+++|+.|+|++|. +..+|. +..+++|+.|+|++|+..+
T Consensus 161 s~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~-l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 161 EDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEECCSEEEEC
T ss_pred cCCcCCCchh-hccCCCCCEEECcCCC-CCCChH-HccCCCCCEEEccCCcCcC
Confidence 9999998877 8999999999999964 555664 8899999999999986654
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=139.03 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=50.0
Q ss_pred CCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEcc
Q 014575 144 LKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR 220 (422)
Q Consensus 144 L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 220 (422)
++.|+|++|......| .+..+++|+.|+|++|.|+.++. .+..+++|++|+|++|...+..|..+..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3445555544333222 14444455555555555554443 34445555555555543333333334445555555555
Q ss_pred CCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 221 WCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 221 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
+|...+..|..+..+++|+.|++++|.++.+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 5444444444444555555555555554444
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5.9e-16 Score=138.59 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=118.1
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
++|++|+++++.+..+|.-..+++|++|++++|.+..+. . +..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~--------------------------l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-P--------------------------ISGLSNLERLRIM 96 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-G--------------------------GTTCTTCCEEEEE
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-h--------------------------hhcCCCCCEEEeE
Confidence 778899999998888884337889999999988665432 1 5577889999999
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCcc-CcccCccccCCCCCCEEecCCCCCCCcc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTA-IEELPSSIECLSRLSALYLDNCKRLKSL 204 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~-i~~lp~~i~~l~~L~~L~L~~~~~l~~l 204 (422)
+|...+..|..+..+++|++|++++|......| .+..+++|++|+|++|. ++.+| .+..+++|+.|++++|. +..+
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~ 174 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDY 174 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCC
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcCh
Confidence 987776677778889999999999987665555 58888899999999997 88887 68889999999999865 4556
Q ss_pred cccccCCCCCcEEEccCCCC
Q 014575 205 PSSLCKLNSLNFIYLRWCSS 224 (422)
Q Consensus 205 p~~l~~l~~L~~L~Ls~c~~ 224 (422)
+ .+..+++|+.|++++|+.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp T-TGGGCSSCCEEEECBC--
T ss_pred H-HhccCCCCCEEEeeCccc
Confidence 6 578889999999998753
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=3.4e-15 Score=137.06 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=66.5
Q ss_pred cEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCC
Q 014575 121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNC 198 (422)
Q Consensus 121 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~ 198 (422)
+.++.+++ .++.+|..+. ++|++|+|++|...+..| .+..+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34555443 3445554332 555566666555444434 355555566666666655555533 355555666666554
Q ss_pred CCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575 199 KRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 199 ~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp 252 (422)
+..+..+..+..+++|+.|+|++|. +..+|..+..+++|+.|++++|.++.+|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccC
Confidence 3332222334555556666665533 3355555555555666666665555554
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=1.4e-15 Score=148.64 Aligned_cols=216 Identities=18% Similarity=0.124 Sum_probs=144.4
Q ss_pred CCCceEEEecCCCCCCCceeEEccCC-CCC-CCeeEEEecCCCC-CCCCCC-C-CCCCceE-EEccCCccccccc-cccC
Q 014575 18 CKLRFLKFYNSKDDGENKCKVSYLVG-PGF-AEVRYLHWYGYPL-KSLPSN-I-HPEKLVS-IEMPHGNIQQLWD-DVEH 90 (422)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~lp~~-l~~-~~Lr~L~l~~~~l-~~lP~~-~-~~~~L~~-L~L~~~~l~~l~~-~~~~ 90 (422)
++|+.|+|++|.+. .+|.+ +.. ++|++|++++|.+ +.+|.. | ++++|.+ +.+.+|+|..+.+ .+..
T Consensus 30 ~~l~~L~Ls~N~i~-------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp TTCSEEEEESCCCS-------EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCCEEEccCCcCC-------CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 46677777776532 24443 444 6777777777765 345543 3 5555544 4455566766643 3456
Q ss_pred CcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccccc-CCCC-CCCCEEEeeCCCCCCCCcCCCCCCCcC
Q 014575 91 NGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAG-IFRL-EFLKELDLWGCSKLKTLPEISSAGNIE 168 (422)
Q Consensus 91 l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~-i~~l-~~L~~L~Ls~~~~l~~~p~~~~l~~L~ 168 (422)
+++|+++....+.+....... +....++..|++.++..+..+|.. +..+ ..++.|++++|......+.....++|+
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVH--KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCT--TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred ccccccccccccccccCCchh--hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence 666666633333322222111 334556788899887777777653 4444 468889999987544334555667899
Q ss_pred EEEee-CccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCc
Q 014575 169 VMYLN-GTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGT 246 (422)
Q Consensus 169 ~L~L~-~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n 246 (422)
.|++. +|.++.+|. .++.+++|++|+|++| .+..+|.. .+.+|+.|.+.+|+.++.+|. +..+++|+.+++.++
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 99997 478889986 4688999999999995 57788864 477888888888889999995 788899999998764
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=3.9e-15 Score=154.23 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=133.3
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
.+|+.|+++++.+..+|..+ +++|++|+|++|+|+.++ + .+++|++|+|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip-~----------------------------~l~~L~~L~Ls 108 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP-E----------------------------LPASLEYLDAC 108 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC-C----------------------------CCTTCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc-c----------------------------ccCCCCEEEcc
Confidence 48999999999999999877 478999999999998764 2 24679999999
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS 206 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 206 (422)
+|...+ +|. +.+ +|+.|+|++|...+ +|. .+++|+.|+|++|.|+.+|. .+++|+.|+|++|+ ++.+|.
T Consensus 109 ~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~ 177 (571)
T 3cvr_A 109 DNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE 177 (571)
T ss_dssp SSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC
T ss_pred CCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch
Confidence 996554 888 655 99999999987555 777 68899999999999999997 67899999999975 556998
Q ss_pred cccCCCCCcEEEccCCCCCCCCCcccCCCCCC-------CEEeccCcccccccc
Q 014575 207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEAL-------DSLIAEGTAIREVYF 253 (422)
Q Consensus 207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L-------~~L~l~~n~l~~lp~ 253 (422)
+. ++|+.|+|++| .+..+|. +.. +| +.|++++|.|+.+|.
T Consensus 178 -l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~ 224 (571)
T 3cvr_A 178 -LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPE 224 (571)
T ss_dssp -CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCCCCCG
T ss_pred -hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcceecCH
Confidence 65 99999999997 4558888 654 77 999999999998886
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1.4e-15 Score=132.35 Aligned_cols=135 Identities=24% Similarity=0.204 Sum_probs=116.4
Q ss_pred cCCCCcEEeccCCCCC-ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcc-cCccccCCCCCCEE
Q 014575 116 HLDKLVNLNLNNCKSL-RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE-LPSSIECLSRLSAL 193 (422)
Q Consensus 116 ~l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L 193 (422)
..++|+.|++++|... +.+|..+..+++|+.|++++|.... ++.+..+++|+.|+|++|.++. +|..+..+++|+.|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3477999999999765 5889888899999999999998554 4889999999999999999997 78778889999999
Q ss_pred ecCCCCCCCccc--ccccCCCCCcEEEccCCCCCCCCCc----ccCCCCCCCEEeccCcccccccc
Q 014575 194 YLDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSLKSLPD----ELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 194 ~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l~~lp~----~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
++++|. +..+| ..+..+++|+.|++++|... .+|. .+..+++|+.|++++|.+.++|.
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 999975 56665 67899999999999997655 4554 78999999999999999987764
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.7e-16 Score=153.53 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=158.6
Q ss_pred CCeeEEEecCCCCCCCCCCC-CC--CCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575 47 AEVRYLHWYGYPLKSLPSNI-HP--EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL 123 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~-~~--~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L 123 (422)
..++.|+++++.+. |..+ .+ .+++.|++++|.+.+.+.....+++|+++....+.+. ....+..+..+++|++|
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEE
Confidence 34778888887665 3323 33 7999999999999998887888888888844333321 11244558899999999
Q ss_pred eccCCCCCccccccCCCCCCCCEEEeeCCCCCCC--CcC-CCCCCCcCEEEeeCc-cCcc--cCccccCCC-CCCEEecC
Q 014575 124 NLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKT--LPE-ISSAGNIEVMYLNGT-AIEE--LPSSIECLS-RLSALYLD 196 (422)
Q Consensus 124 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~p~-~~~l~~L~~L~L~~n-~i~~--lp~~i~~l~-~L~~L~L~ 196 (422)
++++|...+..|..+..+++|++|++++|..++. ++. +..+++|++|++++| .++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 9999987778888898999999999999954542 553 777899999999999 9984 788889999 99999999
Q ss_pred CCC--CC-CcccccccCCCCCcEEEccCCC-CCCCCCcccCCCCCCCEEeccCcc
Q 014575 197 NCK--RL-KSLPSSLCKLNSLNFIYLRWCS-SLKSLPDELGNLEALDSLIAEGTA 247 (422)
Q Consensus 197 ~~~--~l-~~lp~~l~~l~~L~~L~Ls~c~-~l~~lp~~~~~l~~L~~L~l~~n~ 247 (422)
+|. .. +.+|..+..+++|+.|++++|. ..+..+..+..+++|+.|++++|.
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 984 23 5678888899999999999998 445777788999999999999995
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=6.2e-15 Score=144.57 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=135.4
Q ss_pred ceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCC---CCCCceEEEccCCccccccccccCCcchHHH
Q 014575 21 RFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNI---HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI 97 (422)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~---~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l 97 (422)
+.++++++.+. .+|.++. ..+++|++++|.+..+|... .+++|++|+|++|+|..+..+.
T Consensus 21 ~~l~c~~~~l~-------~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--------- 83 (361)
T 2xot_A 21 NILSCSKQQLP-------NVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------- 83 (361)
T ss_dssp TEEECCSSCCS-------SCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT---------
T ss_pred CEEEeCCCCcC-------ccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh---------
Confidence 46666665532 2454433 67999999999999998764 7899999999999999875432
Q ss_pred HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCcc
Q 014575 98 ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTA 176 (422)
Q Consensus 98 ~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~ 176 (422)
+..+++|++|+|++|......+..+.++++|+.|+|++|......| .+..+++|+.|+|++|.
T Consensus 84 ----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 84 ----------------FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp ----------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ----------------ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 6678899999999997665555668899999999999998766656 58999999999999999
Q ss_pred CcccCccc----cCCCCCCEEecCCCCCCCccc-ccccCCCC--CcEEEccCCCCC
Q 014575 177 IEELPSSI----ECLSRLSALYLDNCKRLKSLP-SSLCKLNS--LNFIYLRWCSSL 225 (422)
Q Consensus 177 i~~lp~~i----~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~--L~~L~Ls~c~~l 225 (422)
|+.+|..+ ..+++|+.|+|++|+ +..+| ..+..++. |+.|+|++|+..
T Consensus 148 l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 148 ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999875 679999999999965 55565 45677776 488999997643
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4.4e-17 Score=169.24 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=141.7
Q ss_pred CCCCceEEEccCCccccccccccCCcchHHHHHh-----------hccCCCCCCcchhhhcCCCCcEEe-ccCCCCCccc
Q 014575 67 HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISR-----------ACNFFTKSPNHSLTLHLDKLVNLN-LNNCKSLRIL 134 (422)
Q Consensus 67 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~-----------~~~~~~~~~~~~li~~l~~L~~L~-L~~~~~l~~l 134 (422)
..++|+.|+|++|+++.+|+.+..+++|+.+... ..........+..++.+++|+.|+ ++.+ ....+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchh
Confidence 5678999999999999999988888888877210 001111234445578888888888 4443 12222
Q ss_pred cc------cCC--CCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575 135 PA------GIF--RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS 206 (422)
Q Consensus 135 p~------~i~--~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 206 (422)
+. .+. ....|+.|+|++|.. ..+|.++.+++|+.|+|++|.|+.+|..++.+++|+.|+|++|. +..+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-
T ss_pred hhhhhhcccccccCccCceEEEecCCCC-CCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-
Confidence 11 011 123599999999864 45788999999999999999999999999999999999999965 55588
Q ss_pred cccCCCCCcEEEccCCCCCCCC-CcccCCCCCCCEEeccCcccccccc
Q 014575 207 SLCKLNSLNFIYLRWCSSLKSL-PDELGNLEALDSLIAEGTAIREVYF 253 (422)
Q Consensus 207 ~l~~l~~L~~L~Ls~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lp~ 253 (422)
.++.+++|+.|+|++|...+.. |..++.+++|+.|++++|.++.+|+
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 7999999999999998766665 9999999999999999999998765
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=7.2e-17 Score=158.41 Aligned_cols=238 Identities=15% Similarity=0.070 Sum_probs=130.9
Q ss_pred hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-C-CeeEEEecCCCCCCCCC-CC-C-----CCCceEEEccCCcc
Q 014575 11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-A-EVRYLHWYGYPLKSLPS-NI-H-----PEKLVSIEMPHGNI 81 (422)
Q Consensus 11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~-~Lr~L~l~~~~l~~lP~-~~-~-----~~~L~~L~L~~~~l 81 (422)
+..+...++|+.|++++|.+..... ..+.+.+.. + +|++|++++|.+..... .+ . .++|++|+|++|.+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 3444455569999999887543211 001122333 4 79999999998876543 22 2 27899999999988
Q ss_pred cccccc-----ccCC-cchHHHHHhhccCCCCCC--cchhhhc-CCCCcEEeccCCCCCc----cccccCCCCC-CCCEE
Q 014575 82 QQLWDD-----VEHN-GKLKQIISRACNFFTKSP--NHSLTLH-LDKLVNLNLNNCKSLR----ILPAGIFRLE-FLKEL 147 (422)
Q Consensus 82 ~~l~~~-----~~~l-~~L~~l~~~~~~~~~~~~--~~~li~~-l~~L~~L~L~~~~~l~----~lp~~i~~l~-~L~~L 147 (422)
...... +..+ ++|+++....+.+.+... ....+.. .++|++|+|++|.... .++..+..++ +|++|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 764322 2222 344444222222211110 0111223 2467777777765442 3333344444 77777
Q ss_pred EeeCCCCCCCCc-C----CCCC-CCcCEEEeeCccCcc-----cCccccC-CCCCCEEecCCCCCCCccc----ccccCC
Q 014575 148 DLWGCSKLKTLP-E----ISSA-GNIEVMYLNGTAIEE-----LPSSIEC-LSRLSALYLDNCKRLKSLP----SSLCKL 211 (422)
Q Consensus 148 ~Ls~~~~l~~~p-~----~~~l-~~L~~L~L~~n~i~~-----lp~~i~~-l~~L~~L~L~~~~~l~~lp----~~l~~l 211 (422)
+|++|......+ . +... ++|+.|+|++|.|+. ++..+.. .++|++|+|++|.....-+ ..+..+
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 777776544443 1 2333 477777777777765 5555554 3477777777754333222 234556
Q ss_pred CCCcEEEccCCCC-------CCCCCcccCCCCCCCEEeccCccccc
Q 014575 212 NSLNFIYLRWCSS-------LKSLPDELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 212 ~~L~~L~Ls~c~~-------l~~lp~~~~~l~~L~~L~l~~n~l~~ 250 (422)
++|+.|++++|.. ...++..+..+++|+.|++++|.+..
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 7777777777641 12333455566677777777776653
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=6e-17 Score=160.19 Aligned_cols=210 Identities=15% Similarity=0.066 Sum_probs=134.2
Q ss_pred cCCCCC-CCeeEEEecCCCCCC-----CCCCC-CCCCceEEEccCCcccccc----ccc-------cCCcchHHHHHhhc
Q 014575 41 LVGPGF-AEVRYLHWYGYPLKS-----LPSNI-HPEKLVSIEMPHGNIQQLW----DDV-------EHNGKLKQIISRAC 102 (422)
Q Consensus 41 p~~l~~-~~Lr~L~l~~~~l~~-----lP~~~-~~~~L~~L~L~~~~l~~l~----~~~-------~~l~~L~~l~~~~~ 102 (422)
+..+.. ++|++|++++|.+.. ++..+ .+++|++|+|+++.+..+. .++ ..+++|++|....+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 333333 789999999998765 33334 6789999999998665432 222 45555655533333
Q ss_pred cCCCCC--CcchhhhcCCCCcEEeccCCCCCcc----ccccCCCC---------CCCCEEEeeCCCCC-CCCc----CCC
Q 014575 103 NFFTKS--PNHSLTLHLDKLVNLNLNNCKSLRI----LPAGIFRL---------EFLKELDLWGCSKL-KTLP----EIS 162 (422)
Q Consensus 103 ~~~~~~--~~~~li~~l~~L~~L~L~~~~~l~~----lp~~i~~l---------~~L~~L~Ls~~~~l-~~~p----~~~ 162 (422)
.+.+.. ..+..+..+++|++|+|++|..... ++..+..+ ++|++|++++|... ..+| .+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 322211 1333467777888888887765322 22223333 77888888887654 3344 245
Q ss_pred CCCCcCEEEeeCccCc------ccCccccCCCCCCEEecCCCCCC----CcccccccCCCCCcEEEccCCCCCCC----C
Q 014575 163 SAGNIEVMYLNGTAIE------ELPSSIECLSRLSALYLDNCKRL----KSLPSSLCKLNSLNFIYLRWCSSLKS----L 228 (422)
Q Consensus 163 ~l~~L~~L~L~~n~i~------~lp~~i~~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~Ls~c~~l~~----l 228 (422)
.+++|++|+|++|.|+ -+|..+..+++|+.|+|++|... +.+|..+..+++|+.|+|++|...+. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 5677888888888777 23336777788888888876643 56777777778888888887765443 4
Q ss_pred Cccc--CCCCCCCEEeccCccccc
Q 014575 229 PDEL--GNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 229 p~~~--~~l~~L~~L~l~~n~l~~ 250 (422)
|..+ +.+++|+.|++++|.++.
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHhhccCCCeEEEECcCCcCCH
Confidence 5555 347778888888887764
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=2.2e-17 Score=166.62 Aligned_cols=16 Identities=0% Similarity=0.146 Sum_probs=8.7
Q ss_pred hhCCCCCceEEEecCC
Q 014575 14 FTKMCKLRFLKFYNSK 29 (422)
Q Consensus 14 f~~m~~L~~L~l~~~~ 29 (422)
|..+++|+.|++++|.
T Consensus 24 ~~~~~~L~~L~L~~~~ 39 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCG 39 (461)
T ss_dssp HHHHTTCSEEEEESSC
T ss_pred HhhcCCccEEEccCCC
Confidence 4455555555555544
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=2e-14 Score=134.74 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=133.6
Q ss_pred CCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcch
Q 014575 16 KMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKL 94 (422)
Q Consensus 16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L 94 (422)
++.++..+++.++... . ++ .+.. ++|++|++++|.+..+|.--.+++|++|++++|.|..+..
T Consensus 17 ~l~~l~~l~l~~~~i~-----~--~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-------- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-----D--LV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-------- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTT-----S--EE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--------
T ss_pred HHHHHHHHHhcCCCcc-----c--cc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--------
Confidence 3445666667665432 1 22 2333 8999999999999999943388999999999999887632
Q ss_pred HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeC
Q 014575 95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG 174 (422)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~ 174 (422)
+..+++|++|+|++|. +..+|. +.. ++|+.|++++|. ++.++.+..+++|+.|+|++
T Consensus 81 -------------------l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 81 -------------------LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRN 137 (263)
T ss_dssp -------------------GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTT
T ss_pred -------------------hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEEEccCCc-cCCChhhcCcccccEEECCC
Confidence 4577889999999985 455665 334 999999999986 45578899999999999999
Q ss_pred ccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575 175 TAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS 227 (422)
Q Consensus 175 n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~ 227 (422)
|.|+.+| .+..+++|+.|++++|... .+ ..+..+++|+.|++++|.....
T Consensus 138 N~i~~~~-~l~~l~~L~~L~L~~N~i~-~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 138 NKLKSIV-MLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBCG-GGGGCTTCCEEECTTSCCC-BC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCCCCh-HHccCCCCCEEECCCCcCc-ch-HHhccCCCCCEEeCCCCcccCC
Confidence 9999997 6899999999999997654 44 5688999999999999765443
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=4.5e-17 Score=169.15 Aligned_cols=192 Identities=19% Similarity=0.153 Sum_probs=141.6
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCc-------------ccc-ccccccCCcchHHHH-Hhhcc---CCCC
Q 014575 47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGN-------------IQQ-LWDDVEHNGKLKQII-SRACN---FFTK 107 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~-------------l~~-l~~~~~~l~~L~~l~-~~~~~---~~~~ 107 (422)
++|+.|++++|.++.+|..+ ++++|++|+++++. +.+ .++.+..+++|+.+. ..... +...
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 78889999999999999888 78899999997664 111 223345555665552 11110 0000
Q ss_pred CCcchhhhc--CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccc
Q 014575 108 SPNHSLTLH--LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSI 184 (422)
Q Consensus 108 ~~~~~li~~--l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i 184 (422)
....+.+.. ...|+.|+|++|. +..+|. +.++++|+.|+|++|... .+| .++.+++|+.|+|++|.|+.+| .+
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l 504 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GV 504 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred hhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence 000000111 1258999999985 556887 999999999999999765 676 6999999999999999999998 89
Q ss_pred cCCCCCCEEecCCCCCCCcc-cccccCCCCCcEEEccCCCCCCCCCccc----CCCCCCCEEec
Q 014575 185 ECLSRLSALYLDNCKRLKSL-PSSLCKLNSLNFIYLRWCSSLKSLPDEL----GNLEALDSLIA 243 (422)
Q Consensus 185 ~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~Ls~c~~l~~lp~~~----~~l~~L~~L~l 243 (422)
+.+++|+.|+|++|...+.. |..++.+++|+.|+|++|+..+. |... ..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence 99999999999997665554 99999999999999999765554 4333 34788998864
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=6.9e-15 Score=125.33 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=107.0
Q ss_pred CCCCcEEeccCCCCC-ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcc-cCccccCCCCCCEEe
Q 014575 117 LDKLVNLNLNNCKSL-RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE-LPSSIECLSRLSALY 194 (422)
Q Consensus 117 l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~ 194 (422)
.++|+.|++++|... +.+|..+..+++|+.|++++|..... +.++.+++|++|+|++|.++. +|..++.+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 467999999999766 58898888999999999999975544 889999999999999999997 787788899999999
Q ss_pred cCCCCCCCccc--ccccCCCCCcEEEccCCCCCCCCC---cccCCCCCCCEEeccC
Q 014575 195 LDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSLKSLP---DELGNLEALDSLIAEG 245 (422)
Q Consensus 195 L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l~~lp---~~~~~l~~L~~L~l~~ 245 (422)
+++|. +..+| ..+..+++|+.|++++|...+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99976 44443 779999999999999986544433 3688899999998863
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=3.1e-14 Score=126.95 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=110.6
Q ss_pred cEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC--CCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCC
Q 014575 121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDN 197 (422)
Q Consensus 121 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~ 197 (422)
+.++++++ .++.+|..+.. +|+.|++++|......+. +..+++|++|+|++|.|+.+ |..++.+++|++|+|++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68899997 56888886643 899999999976655553 88999999999999999977 67899999999999999
Q ss_pred CCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccc
Q 014575 198 CKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 198 ~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 250 (422)
|+..+..|..+..+++|+.|+|++|...+..|..+..+++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 87666666678999999999999998888889999999999999999999873
No 116
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=2.8e-17 Score=165.95 Aligned_cols=233 Identities=15% Similarity=0.141 Sum_probs=149.8
Q ss_pred CCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-----CC--CCCCceEEEccCCcccc----
Q 014575 16 KMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-----NI--HPEKLVSIEMPHGNIQQ---- 83 (422)
Q Consensus 16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-----~~--~~~~L~~L~L~~~~l~~---- 83 (422)
..++|+.|++++|.+.... ...++..+.. ++|++|++++|++...+. .+ ..++|++|++++|.+..
T Consensus 140 ~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TTCCCCEEECTTSCCBGGG--HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred CCCcceEEECCCCCCCHHH--HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 3567888888887643211 0112333333 778888888887654221 11 24578888888887765
Q ss_pred -ccccccCCcchHHHHHhhccCCCCC---CcchhhhcCCCCcEEeccCCCCCcc----ccccCCCCCCCCEEEeeCCCCC
Q 014575 84 -LWDDVEHNGKLKQIISRACNFFTKS---PNHSLTLHLDKLVNLNLNNCKSLRI----LPAGIFRLEFLKELDLWGCSKL 155 (422)
Q Consensus 84 -l~~~~~~l~~L~~l~~~~~~~~~~~---~~~~li~~l~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~~~~l 155 (422)
+...+..+++|+++....+.+.+.. ..+.++..+++|++|++++|..... ++..+.++++|++|++++|...
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 2333444455554422111111100 0012233578899999999855443 6777777899999999998643
Q ss_pred CCCc-CC-----CCCCCcCEEEeeCccCcc-----cCccccCCCCCCEEecCCCCCCCcccccccC-----CCCCcEEEc
Q 014575 156 KTLP-EI-----SSAGNIEVMYLNGTAIEE-----LPSSIECLSRLSALYLDNCKRLKSLPSSLCK-----LNSLNFIYL 219 (422)
Q Consensus 156 ~~~p-~~-----~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~-----l~~L~~L~L 219 (422)
...+ .+ ...++|+.|+|++|.++. +|..+..+++|+.|++++|......+..+.. .++|+.|++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 2222 11 233689999999998874 5677788899999999997544333333332 678999999
Q ss_pred cCCCCCC----CCCcccCCCCCCCEEeccCccccc
Q 014575 220 RWCSSLK----SLPDELGNLEALDSLIAEGTAIRE 250 (422)
Q Consensus 220 s~c~~l~----~lp~~~~~l~~L~~L~l~~n~l~~ 250 (422)
++|.... .+|..+..+++|++|++++|.++.
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 9986654 778888888999999999998864
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=8.4e-16 Score=150.75 Aligned_cols=224 Identities=11% Similarity=0.018 Sum_probs=131.8
Q ss_pred eEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-----CC-CCC-CceEEEccCCcccccc-ccccCC-
Q 014575 22 FLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-----NI-HPE-KLVSIEMPHGNIQQLW-DDVEHN- 91 (422)
Q Consensus 22 ~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-----~~-~~~-~L~~L~L~~~~l~~l~-~~~~~l- 91 (422)
+++++.|.+++. +|..+.. .+|++|++++|.+...+. .+ .++ +|++|+|++|.|.... ..+..+
T Consensus 2 ~~~ls~n~~~~~------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 75 (362)
T 3goz_A 2 NYKLTLHPGSNP------VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75 (362)
T ss_dssp EEECCCCTTCCH------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred ccccccccchHH------HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence 456666665433 4444444 679999999999998874 33 566 8999999999998752 222221
Q ss_pred ----cchHHHHHhhccCCCCC--CcchhhhcC-CCCcEEeccCCCCCcccccc----CCC-CCCCCEEEeeCCCCCCCCc
Q 014575 92 ----GKLKQIISRACNFFTKS--PNHSLTLHL-DKLVNLNLNNCKSLRILPAG----IFR-LEFLKELDLWGCSKLKTLP 159 (422)
Q Consensus 92 ----~~L~~l~~~~~~~~~~~--~~~~li~~l-~~L~~L~L~~~~~l~~lp~~----i~~-l~~L~~L~Ls~~~~l~~~p 159 (422)
++|+++....+.+.+.. .....+..+ ++|++|+|++|......+.. +.. .++|++|+|++|......+
T Consensus 76 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred hccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 44554422222222111 111113344 67788888877654433322 223 2577888888776543222
Q ss_pred -----CCCCCC-CcCEEEeeCccCcccCc-----cccCC-CCCCEEecCCCCCCC----cccccccC-CCCCcEEEccCC
Q 014575 160 -----EISSAG-NIEVMYLNGTAIEELPS-----SIECL-SRLSALYLDNCKRLK----SLPSSLCK-LNSLNFIYLRWC 222 (422)
Q Consensus 160 -----~~~~l~-~L~~L~L~~n~i~~lp~-----~i~~l-~~L~~L~L~~~~~l~----~lp~~l~~-l~~L~~L~Ls~c 222 (422)
.+..++ +|++|+|++|.++..+. .+... ++|+.|+|++|.... .++..+.. .++|+.|+|++|
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 123333 78888888887775442 34444 478888888765332 15555555 347888888876
Q ss_pred CCCCCCC----cccCCCCCCCEEeccCcccccc
Q 014575 223 SSLKSLP----DELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 223 ~~l~~lp----~~~~~l~~L~~L~l~~n~l~~l 251 (422)
.....-+ ..+..+++|+.|++++|.+..+
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 5443322 3346667788888888775544
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=5.6e-15 Score=157.84 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=86.7
Q ss_pred CeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575 48 EVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126 (422)
Q Consensus 48 ~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~ 126 (422)
++..+++..+.+...|..+ .+.+|+.|+|++|.+..++.. +..+++|++|+|+
T Consensus 202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--------------------------~~~l~~L~~L~Ls 255 (727)
T 4b8c_D 202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN--------------------------IFKYDFLTRLYLN 255 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCSCCCGG--------------------------GGGCCSCSCCBCT
T ss_pred cccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh--------------------------hcCCCCCCEEEee
Confidence 3444444445555445555 778888999998888876554 3356777888888
Q ss_pred CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc
Q 014575 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP 205 (422)
Q Consensus 127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 205 (422)
+|... .+|..+.++++|++|+|++|... .+| .++.+++|++|+|++|.|+.+|..|+.+++|+.|+|++|...+.+|
T Consensus 256 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 256 GNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 87544 77777778888888888887755 556 5777788888888888888888778888888888888877766666
Q ss_pred ccc
Q 014575 206 SSL 208 (422)
Q Consensus 206 ~~l 208 (422)
..+
T Consensus 334 ~~~ 336 (727)
T 4b8c_D 334 KIL 336 (727)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=8.7e-14 Score=120.93 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=109.5
Q ss_pred CCCCceEEEccCCccc--cccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC
Q 014575 67 HPEKLVSIEMPHGNIQ--QLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL 144 (422)
Q Consensus 67 ~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 144 (422)
.+++|++|++++|.+. .++.. +..+++|++|++++|... .+ ..+..+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~--------------------------~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L 73 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL--------------------------TAEFVNLEFLSLINVGLI-SV-SNLPKLPKL 73 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC--------------------------CGGGGGCCEEEEESSCCC-CC-SSCCCCSSC
T ss_pred CcccCCEEECCCCCCChhhHHHH--------------------------HHhCCCCCEEeCcCCCCC-Ch-hhhccCCCC
Confidence 3578999999999987 44332 456778999999999744 44 668899999
Q ss_pred CEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccC--ccccCCCCCCEEecCCCCCCCcccc----cccCCCCCcEE
Q 014575 145 KELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALYLDNCKRLKSLPS----SLCKLNSLNFI 217 (422)
Q Consensus 145 ~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L 217 (422)
++|++++|.....+|. +..+++|+.|+|++|.++.+| ..+..+++|+.|++++|.. ..+|. .+..+++|+.|
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEE
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEe
Confidence 9999999987776775 556899999999999999887 6889999999999999754 45555 78899999999
Q ss_pred EccCCCCCCCCCcc
Q 014575 218 YLRWCSSLKSLPDE 231 (422)
Q Consensus 218 ~Ls~c~~l~~lp~~ 231 (422)
++++|. ...+|+.
T Consensus 153 ~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 153 DGYDRE-DQEAPDS 165 (168)
T ss_dssp TTEETT-SCBCCSS
T ss_pred cCCCCC-hhhcccc
Confidence 999974 4556654
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=2.6e-14 Score=152.71 Aligned_cols=134 Identities=22% Similarity=0.255 Sum_probs=92.6
Q ss_pred hhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCC
Q 014575 113 LTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLS 191 (422)
Q Consensus 113 li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~ 191 (422)
.+..++.|+.|+|++|.. ..+|..++++++|++|+|++|... .+| .++.+++|++|+|++|.|+.+|..++.+++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 366777788888887754 467766777788888888887655 555 47777778888888888777777777777888
Q ss_pred EEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCC-CCEEeccCcccc
Q 014575 192 ALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA-LDSLIAEGTAIR 249 (422)
Q Consensus 192 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~-L~~L~l~~n~l~ 249 (422)
+|+|++| .++.+|..|+.+++|+.|+|++|...+.+|..+..+.. +..+++++|.++
T Consensus 297 ~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 297 YFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp EEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred EEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 8888775 45677777777778888888877777776666543221 123556666665
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=3.3e-13 Score=120.19 Aligned_cols=131 Identities=20% Similarity=0.215 Sum_probs=94.4
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCC
Q 014575 50 RYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCK 129 (422)
Q Consensus 50 r~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~ 129 (422)
++++++++.++.+|..+. .+|++|++++|+|..++.. ..++.+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~------------------------~~~~~l~~L~~L~Ls~N~ 65 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSD------------------------GLFGRLPHLVKLELKRNQ 65 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCS------------------------CSGGGCTTCCEEECCSSC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCc------------------------cccccCCCCCEEECCCCC
Confidence 577888888888887663 3888888888888776432 015567778888888887
Q ss_pred CCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCccc
Q 014575 130 SLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLP 205 (422)
Q Consensus 130 ~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp 205 (422)
..+..|..+.++++|++|+|++|...+..|. +..+++|++|+|++|+|+.+ |..+..+++|++|+|++|......+
T Consensus 66 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 6666677777788888888888776555553 77777788888888877755 5567777777777777766554433
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=7.8e-13 Score=118.00 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=78.9
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCC
Q 014575 50 RYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCK 129 (422)
Q Consensus 50 r~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~ 129 (422)
++++.+++.++.+|..+ +++|++|++++|.|+.++.. +..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~--------------------------~~~l~~L~~L~Ls~N~ 65 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKE--------------------------LSNYKHLTLIDLSNNR 65 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGG--------------------------GGGCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHH--------------------------hhcccCCCEEECCCCc
Confidence 46667777777777655 35777777777777655422 4556667777777776
Q ss_pred CCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCC
Q 014575 130 SLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCK 199 (422)
Q Consensus 130 ~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~ 199 (422)
..+..+..+.++++|++|+|++|......| .+..+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|.
T Consensus 66 i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 555555556667777777777766544444 366666777777777777666653 5566666666666654
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1e-13 Score=121.67 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=112.3
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCC-CCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccc-cCCCCCC
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLE-FLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI-ECLSRLS 191 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~ 191 (422)
+..+.+|+.|++++|.. ..+|. +..+. +|+.|++++|.... ++.+..+++|++|+|++|.|+.+|+.+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 45678899999999854 46665 55555 99999999987554 588999999999999999999998765 8999999
Q ss_pred EEecCCCCCCCcccc--cccCCCCCcEEEccCCCCCCCCCcc----cCCCCCCCEEeccCcccccc
Q 014575 192 ALYLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSSLKSLPDE----LGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 192 ~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~l~~lp~~----~~~l~~L~~L~l~~n~l~~l 251 (422)
+|++++|. ++.+|. .+..+++|+.|++++|.. ..+|.. +..+++|+.|++++|.+.+.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 99999965 578887 789999999999999765 567774 88899999999999987653
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=7.7e-13 Score=118.03 Aligned_cols=125 Identities=23% Similarity=0.270 Sum_probs=103.9
Q ss_pred cEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCC
Q 014575 121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNC 198 (422)
Q Consensus 121 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~ 198 (422)
+.++++++ .++.+|..+. ++|+.|++++|... .+| .+..+++|+.|+|++|.|+.++. .+..+++|++|+|++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888886 5678887663 68999999998754 565 68899999999999999998875 6899999999999997
Q ss_pred CCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575 199 KRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 199 ~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
...+..|..+..+++|+.|+|++|......+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 766555667999999999999997655444446889999999999999876
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.1e-13 Score=117.76 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=102.4
Q ss_pred CCCCceEEEccCCccc--cccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC
Q 014575 67 HPEKLVSIEMPHGNIQ--QLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL 144 (422)
Q Consensus 67 ~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 144 (422)
.+++|++|++++|.+. .++.. +..+++|++|++++|...+ + ..+.++++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~--------------------------~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 66 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL--------------------------TDEFEELEFLSTINVGLTS-I-ANLPKLNKL 66 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC--------------------------CTTCTTCCEEECTTSCCCC-C-TTCCCCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHH--------------------------HhhcCCCcEEECcCCCCCC-c-hhhhcCCCC
Confidence 3468999999999887 44322 5577889999999986544 4 568899999
Q ss_pred CEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccC--ccccCCCCCCEEecCCCCCCCcccc----cccCCCCCcEE
Q 014575 145 KELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALYLDNCKRLKSLPS----SLCKLNSLNFI 217 (422)
Q Consensus 145 ~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L 217 (422)
++|++++|.....+|. +..+++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|+.|
T Consensus 67 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEE
T ss_pred CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccc
Confidence 9999999987776775 556889999999999999875 789999999999999975 445554 68889999999
Q ss_pred EccC
Q 014575 218 YLRW 221 (422)
Q Consensus 218 ~Ls~ 221 (422)
++++
T Consensus 146 ~l~d 149 (149)
T 2je0_A 146 DGYD 149 (149)
T ss_dssp TTBC
T ss_pred cCCC
Confidence 9864
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=1.8e-12 Score=113.62 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=76.2
Q ss_pred eeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCC
Q 014575 49 VRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNC 128 (422)
Q Consensus 49 Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~ 128 (422)
.+.++.+++.+..+|..+ +++|++|++++|++++++... ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~-------------------------~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGV-------------------------FDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTT-------------------------TTTCTTCSEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHH-------------------------hcCcccccEEECCCC
Confidence 345666666677776544 356777777777766554321 345566677777766
Q ss_pred CCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcc
Q 014575 129 KSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSL 204 (422)
Q Consensus 129 ~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l 204 (422)
...+..+..+.++++|+.|++++|......+. +..+++|++|+|++|.++.+|.. +..+++|+.|++++|...+..
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 44433333345666666666666654433332 45666666666666666666554 355666666666665544433
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=2.6e-12 Score=112.61 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=102.8
Q ss_pred CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCC
Q 014575 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDN 197 (422)
Q Consensus 120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~ 197 (422)
.+.++++++ .+..+|..+ .++|+.|++++|...+..+ .+..+++|++|+|++|.++.+|.. +..+++|+.|++++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888886 466777654 4799999999988655444 378899999999999999998865 68999999999999
Q ss_pred CCCCCcccccccCCCCCcEEEccCCCCCCCCCc-ccCCCCCCCEEeccCcccccc
Q 014575 198 CKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD-ELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 198 ~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l 251 (422)
|...+..+..+..+++|+.|++++|... .+|. .+..+++|+.|++++|.+...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence 7655444445788999999999997655 5554 468899999999999998743
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=3.7e-13 Score=118.00 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=66.0
Q ss_pred CCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCc--cccCCCCCCEEec
Q 014575 119 KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPS--SIECLSRLSALYL 195 (422)
Q Consensus 119 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~L 195 (422)
+|++|++++|... .+ ..+..+++|++|++++|......+. +..+++|++|+|++|.|+.+|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCC-cc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 5667777766433 33 3466677777777777654433333 3666777777777777777776 6677777777777
Q ss_pred CCCCCCCccccc----ccCCCCCcEEEccCCC
Q 014575 196 DNCKRLKSLPSS----LCKLNSLNFIYLRWCS 223 (422)
Q Consensus 196 ~~~~~l~~lp~~----l~~l~~L~~L~Ls~c~ 223 (422)
++|. +..+|.. +..+++|+.|++++|.
T Consensus 121 ~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 121 LRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7754 3456653 6677777777777654
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.35 E-value=6.8e-14 Score=145.50 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=104.4
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccc--cccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575 47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQL--WDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL 123 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l--~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L 123 (422)
.+|+.|.+.++....+|..+ .+++|++|++++|.+... ...+..+++|+.+... .+ ......+.++..+++|++|
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~-~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NV-IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GG-GHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc-cCHHHHHHHHHhCCCCCEE
Confidence 66777777766666666655 567888888888776431 1223455555554111 11 1111222334556677777
Q ss_pred eccC----------CCCCcc--ccccCCCCCCCCEEEeeCCCCCCCCc-CCCC-CCCcCEEEee----CccCcccC----
Q 014575 124 NLNN----------CKSLRI--LPAGIFRLEFLKELDLWGCSKLKTLP-EISS-AGNIEVMYLN----GTAIEELP---- 181 (422)
Q Consensus 124 ~L~~----------~~~l~~--lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~-l~~L~~L~L~----~n~i~~lp---- 181 (422)
++++ |..++. ++.....+++|++|+++.+......+ .++. +++|+.|+++ .|.++..|
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 7773 433331 22222246666666665444332222 2332 5566666665 44555433
Q ss_pred --ccccCCCCCCEEecCCCCC--CCccccccc-CCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEeccCcccc
Q 014575 182 --SSIECLSRLSALYLDNCKR--LKSLPSSLC-KLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 182 --~~i~~l~~L~~L~L~~~~~--l~~lp~~l~-~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
..+..+++|+.|+++.|.. ....+..+. .+++|+.|++++|...+ .++..+..+++|+.|++++|.++
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 2245566666666655432 222222222 35666666666655433 23444556666677777666654
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=4.6e-14 Score=146.79 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=76.0
Q ss_pred CCeeEEEecCCCCCCC-----CCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhh-ccCCCCCCcchhhhcCCC
Q 014575 47 AEVRYLHWYGYPLKSL-----PSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRA-CNFFTKSPNHSLTLHLDK 119 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~l-----P~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~-~~~~~~~~~~~li~~l~~ 119 (422)
++|++|++.++.+..+ +..+ .+++|++|+++++.+.+++..+..+++|+.+.... ............+..+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 6677777776666422 2222 45677777777777666555555555555552211 111111111122445556
Q ss_pred CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCc--ccCccccCCCCCCEEec
Q 014575 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIE--ELPSSIECLSRLSALYL 195 (422)
Q Consensus 120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L 195 (422)
|+.|+++++ ....+|..+..+++|++|++++|....... .+..+++|+.|+++ +.+. .++..+..+++|++|++
T Consensus 272 L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 272 LCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp CCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 666666653 344555555566677777777765221111 14555666666666 3332 23333345556666666
Q ss_pred C
Q 014575 196 D 196 (422)
Q Consensus 196 ~ 196 (422)
+
T Consensus 350 ~ 350 (592)
T 3ogk_B 350 E 350 (592)
T ss_dssp E
T ss_pred e
Confidence 6
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=2.3e-14 Score=128.25 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=77.5
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCccccCCCCCCE
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSRLSA 192 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~ 192 (422)
+..+++|++|++++|.. ..+| .+.++++|++|++++|... .+|. +..+++|+.|+|++|.++.+| .+..+++|+.
T Consensus 44 ~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 55666677777776643 3355 4666677777777776533 4453 344456777777777777665 4666667777
Q ss_pred EecCCCCCCCcccc--cccCCCCCcEEEccCCCCCCCCCcc----------cCCCCCCCEEeccCcccc
Q 014575 193 LYLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSSLKSLPDE----------LGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 193 L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~l~~lp~~----------~~~l~~L~~L~l~~n~l~ 249 (422)
|++++|. +..+|. .+..+++|+.|++++|...+..|.. +..+++|+.|+ ++.++
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777643 344332 4666677777777766554444432 45566666664 44443
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=4.1e-14 Score=126.65 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=105.7
Q ss_pred CCCCcEEeccCCCCCcc------ccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCC
Q 014575 117 LDKLVNLNLNNCKSLRI------LPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRL 190 (422)
Q Consensus 117 l~~L~~L~L~~~~~l~~------lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L 190 (422)
...++.++++.+...+. +|..+..+++|++|++++|... .+|.+..+++|+.|++++|.++.+|..+..+++|
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-cccccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 34445555555444444 4447889999999999998754 4788888999999999999999999988888999
Q ss_pred CEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCc--ccCCCCCCCEEeccCcccccc
Q 014575 191 SALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD--ELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 191 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l 251 (422)
+.|++++|. +..+| .+..+++|+.|++++|.. ..+|. .+..+++|+.|++++|.+...
T Consensus 96 ~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 96 EELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECcCCc-CCcCC-ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccc
Confidence 999999974 55677 588999999999999754 44443 688999999999999998654
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=1.1e-10 Score=101.81 Aligned_cols=104 Identities=26% Similarity=0.314 Sum_probs=67.7
Q ss_pred CCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccc-cccCCCCCcEEEcc
Q 014575 144 LKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLR 220 (422)
Q Consensus 144 L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls 220 (422)
.+.++++++. ++.+| .+. ++|+.|+|++|.|+.+ |..+..+++|++|+|++|+. ..+|. .+..+++|+.|+|+
T Consensus 11 ~~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECC
Confidence 4566666654 33444 343 4677777777777766 44567777777777777543 34443 35677788888888
Q ss_pred CCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575 221 WCSSLKSLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 221 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
+|...+..+..+..+++|+.|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7654444444577788888888888877643
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=1.7e-10 Score=100.92 Aligned_cols=103 Identities=23% Similarity=0.363 Sum_probs=68.3
Q ss_pred CEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCccccc-ccCCCCCcEEEccC
Q 014575 145 KELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRW 221 (422)
Q Consensus 145 ~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~ 221 (422)
+.++++++. ++.+| .+. ++|+.|+|++|.|+.+ |..++.+++|++|+|++|+ +..+|.. +..+++|+.|+|++
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 556666654 34455 343 4777777777777766 4456777777777777753 4445544 46778888888887
Q ss_pred CCCCCCCCc-ccCCCCCCCEEeccCccccccc
Q 014575 222 CSSLKSLPD-ELGNLEALDSLIAEGTAIREVY 252 (422)
Q Consensus 222 c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lp 252 (422)
|... .+|. .+..+++|+.|++++|.+...+
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCCccccc
Confidence 5444 4444 4777888888888888877554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=1.6e-10 Score=100.63 Aligned_cols=103 Identities=24% Similarity=0.310 Sum_probs=86.1
Q ss_pred CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCC
Q 014575 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDN 197 (422)
Q Consensus 120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~ 197 (422)
.+.|+++++ .+..+|..+ .++|+.|+|++|...+..| .+..+++|++|+|++|+|+.+|+. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999997 567788766 3899999999998777666 489999999999999999999876 58999999999999
Q ss_pred CCCCCcccc-cccCCCCCcEEEccCCCCCC
Q 014575 198 CKRLKSLPS-SLCKLNSLNFIYLRWCSSLK 226 (422)
Q Consensus 198 ~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~ 226 (422)
|+ +..+|. .+..+++|+.|+|++|+...
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 75 445554 58899999999999976543
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1.5e-10 Score=101.35 Aligned_cols=102 Identities=28% Similarity=0.352 Sum_probs=86.2
Q ss_pred CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCC
Q 014575 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDN 197 (422)
Q Consensus 120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~ 197 (422)
-+.++++++ .++.+|..+. ++|+.|+|++|...+..| .+..+++|++|+|++|+|+.+|.. +..+++|+.|+|++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368899987 5688888774 899999999998776666 589999999999999999999886 58999999999999
Q ss_pred CCCCCccccc-ccCCCCCcEEEccCCCCC
Q 014575 198 CKRLKSLPSS-LCKLNSLNFIYLRWCSSL 225 (422)
Q Consensus 198 ~~~l~~lp~~-l~~l~~L~~L~Ls~c~~l 225 (422)
|+ +..+|.. +..+++|+.|+|++|+..
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 65 5566654 889999999999997543
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=4.7e-11 Score=115.20 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccc-cccCCCCCc-EEEccCCCCCCCC-CcccCCCCCCC
Q 014575 164 AGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLN-FIYLRWCSSLKSL-PDELGNLEALD 239 (422)
Q Consensus 164 l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~-~L~Ls~c~~l~~l-p~~~~~l~~L~ 239 (422)
+++|+.|+|++|+++.+|. .+..+++|+.|++.++ +..++. .|.++++|+ .+++.+ .+..+ +..+.+|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 6789999999999999986 5788999999999985 666665 478899999 999987 44444 46788999999
Q ss_pred EEeccCcccccccc
Q 014575 240 SLIAEGTAIREVYF 253 (422)
Q Consensus 240 ~L~l~~n~l~~lp~ 253 (422)
.+++++|+++.++.
T Consensus 301 ~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 301 YVLATGDKITTLGD 314 (329)
T ss_dssp EEEECSSCCCEECT
T ss_pred EEEeCCCccCccch
Confidence 99999998887764
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=4.1e-13 Score=139.56 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=10.4
Q ss_pred hCCCCCceEEEecC
Q 014575 15 TKMCKLRFLKFYNS 28 (422)
Q Consensus 15 ~~m~~L~~L~l~~~ 28 (422)
.++++|+.|+++++
T Consensus 208 ~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 208 TRCPNLKSLKLNRA 221 (594)
T ss_dssp HHCTTCCEEECCTT
T ss_pred HhCCCCcEEecCCC
Confidence 34588888888875
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=5.9e-14 Score=145.97 Aligned_cols=229 Identities=15% Similarity=0.118 Sum_probs=117.3
Q ss_pred hCCCCCceEEEecCCCCCCCceeEEccCCCC--CCCeeEEEecCC-CCCC--CCCCC-CCCCceEEEccCCccccc----
Q 014575 15 TKMCKLRFLKFYNSKDDGENKCKVSYLVGPG--FAEVRYLHWYGY-PLKS--LPSNI-HPEKLVSIEMPHGNIQQL---- 84 (422)
Q Consensus 15 ~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~--~~~Lr~L~l~~~-~l~~--lP~~~-~~~~L~~L~L~~~~l~~l---- 84 (422)
..+++|+.|+++++.+... .+..+. .++|++|++.+| .+.. ++... .+++|++|+|++|.+...
T Consensus 102 ~~~~~L~~L~L~~~~~~~~------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDD------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHCTTCCEEEEESCBCCHH------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HhCCCCCeEEeeCcEEcHH------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 4556666666666542211 111111 166777777776 3332 33333 466777777777775432
Q ss_pred -cccccCCcchHHHHHhhcc-CCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCC--------
Q 014575 85 -WDDVEHNGKLKQIISRACN-FFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSK-------- 154 (422)
Q Consensus 85 -~~~~~~l~~L~~l~~~~~~-~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~-------- 154 (422)
......+++|+.|....+. .........++..+++|++|++++|...+.+|..+.++++|+.|++++|..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 1122244455555222221 011112233345677888888888765556666666777777777655421
Q ss_pred -----------CCC-----------CcC-CCCCCCcCEEEeeCccCcc--cCccccCCCCCCEEecCCCCCCCccccccc
Q 014575 155 -----------LKT-----------LPE-ISSAGNIEVMYLNGTAIEE--LPSSIECLSRLSALYLDNCKRLKSLPSSLC 209 (422)
Q Consensus 155 -----------l~~-----------~p~-~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~ 209 (422)
++. +|. +..+++|++|+|++|.++. ++..+..+++|+.|++++|-....++....
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~ 335 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHH
Confidence 111 111 1134567777777766552 333355667777777776522122333233
Q ss_pred CCCCCcEEEccCC--------CCCCC--CCcccCCCCCCCEEeccCcccc
Q 014575 210 KLNSLNFIYLRWC--------SSLKS--LPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 210 ~l~~L~~L~Ls~c--------~~l~~--lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
.+++|+.|++++| +.++. +......+++|+.|.+.++.++
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 4667777777432 22221 1111123667777776666654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.07 E-value=3e-09 Score=105.54 Aligned_cols=223 Identities=11% Similarity=0.137 Sum_probs=157.3
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQL 84 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l 84 (422)
.|...+|.+. +|+.+.+..+- ..++..... .+|+.+.+.+ .++.++.. | .+.+|+.+++++|+++.+
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~i--------~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I 195 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEGL--------KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKL 195 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTTC--------CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred EehHhhcccC-CccEEEeCCCc--------cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEe
Confidence 3567899985 79999887642 124433333 7788888875 77777754 4 788999999999999888
Q ss_pred cccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCC
Q 014575 85 WDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EIS 162 (422)
Q Consensus 85 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~ 162 (422)
..+.....+|+.+... .++. ......|.++++|+.+++..+ +..++...+.-.+|+.+.+..+ +..++ .|.
T Consensus 196 ~~~aF~~~~L~~l~lp-~~l~--~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~ 268 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLP-VTLK--EIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFY 268 (401)
T ss_dssp CTTTTTTCCCSEEECC-TTCC--EECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTT
T ss_pred chhhEeecccCEEEeC-Cchh--eehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC--ccEEChhHhh
Confidence 7766555555544111 0000 112223778899999999874 5566554444488999999653 45554 588
Q ss_pred CCCCcCEEEeeCccCc-----ccC-ccccCCCCCCEEecCCCCCCCcccc-cccCCCCCcEEEccCCCCCCCC-CcccCC
Q 014575 163 SAGNIEVMYLNGTAIE-----ELP-SSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSL-PDELGN 234 (422)
Q Consensus 163 ~l~~L~~L~L~~n~i~-----~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~l-p~~~~~ 234 (422)
++++|+.+.+.++.+. .++ ..+..+++|+.+.+.+ .+..++. .|.++++|+.++|..+ +..+ +..+.+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~ 344 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN 344 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC
Confidence 8999999999988776 454 4678899999999995 3566654 5778899999999653 4444 456788
Q ss_pred CCCCCEEeccCccccccc
Q 014575 235 LEALDSLIAEGTAIREVY 252 (422)
Q Consensus 235 l~~L~~L~l~~n~l~~lp 252 (422)
+ +|+.+.+.+|.+..++
T Consensus 345 ~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp S-CCCEEEECCSSCCBCC
T ss_pred C-CCCEEEEcCCCCcccc
Confidence 8 9999999999776654
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=7.6e-10 Score=107.30 Aligned_cols=100 Identities=19% Similarity=0.110 Sum_probs=53.0
Q ss_pred EEeccCCCCCccccccCCCCCCCCEEEeeC-CCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCC
Q 014575 122 NLNLNNCKSLRILPAGIFRLEFLKELDLWG-CSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNC 198 (422)
Q Consensus 122 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~-~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~ 198 (422)
.++.+++..+..+|. +..+++|+.|+|++ |...+..| .|..+++|+.|+|++|+|+.+|+ .|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555434555666 66666666666664 43322222 35666666666666666665543 4566666666666664
Q ss_pred CCCCcccccccCCCCCcEEEccCCC
Q 014575 199 KRLKSLPSSLCKLNSLNFIYLRWCS 223 (422)
Q Consensus 199 ~~l~~lp~~l~~l~~L~~L~Ls~c~ 223 (422)
+ +..+|..+.....|+.|+|.+|+
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred c-cceeCHHHcccCCceEEEeeCCC
Confidence 3 33444433222236666665543
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=2.1e-09 Score=103.59 Aligned_cols=219 Identities=10% Similarity=0.036 Sum_probs=125.2
Q ss_pred eeChhhhhC--------CCCCceEEEecCCCCCCCceeEEccCC-CCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEE
Q 014575 8 YLHPDTFTK--------MCKLRFLKFYNSKDDGENKCKVSYLVG-PGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIE 75 (422)
Q Consensus 8 ~l~~~~f~~--------m~~L~~L~l~~~~~~~~~~~~~~lp~~-l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~ 75 (422)
.|++.+|.+ +++|+.|.|.+ .. ..++.+ +.. .+|+.|++.++.+..++... ...++..+.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i-------~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KI-------KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TC-------CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cc-------cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 577888888 88888888876 21 124443 444 78888888888887777764 444555555
Q ss_pred ccCCcc----ccccc-cccCCcchHHHHHhhccCCCCCCcchh-h---hcCCCCcEEeccCCCCCccccccCC-CCCCCC
Q 014575 76 MPHGNI----QQLWD-DVEHNGKLKQIISRACNFFTKSPNHSL-T---LHLDKLVNLNLNNCKSLRILPAGIF-RLEFLK 145 (422)
Q Consensus 76 L~~~~l----~~l~~-~~~~l~~L~~l~~~~~~~~~~~~~~~l-i---~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~ 145 (422)
+..+.. ..+.. .+..+.+|+.. .........+.. + ....++..+.+.+.-...... .+. .+++|+
T Consensus 155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~----i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~l~~~~~~L~ 229 (329)
T 3sb4_A 155 LGSSDAYRFKNRWEHFAFIEGEPLETT----IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK-LIRDYMPNLV 229 (329)
T ss_dssp TTCTHHHHTSTTTTTSCEEESCCCEEE----EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH-HHHHHCTTCC
T ss_pred Ccchhhhhcccccccccccccccccee----EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHH-HHHHhcCCCe
Confidence 444211 11100 01111111100 000000000000 0 023344555555431111111 111 367888
Q ss_pred EEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCC-EEecCCCCCCCccc-ccccCCCCCcEEEcc
Q 014575 146 ELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLS-ALYLDNCKRLKSLP-SSLCKLNSLNFIYLR 220 (422)
Q Consensus 146 ~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~-~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls 220 (422)
.|++++|+ +..+| .|.++++|+.|+|.+| ++.++. +|..+++|+ .+++.+ .+..++ ..|.++++|+.++++
T Consensus 230 ~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 230 SLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp EEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred EEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 88888865 44555 4788888888888887 777765 577888888 888887 355554 567888889999887
Q ss_pred CCCCCCCCCcccCCCCCCCEEec
Q 014575 221 WCSSLKSLPDELGNLEALDSLIA 243 (422)
Q Consensus 221 ~c~~l~~lp~~~~~l~~L~~L~l 243 (422)
+++....-+..+.++++|+.++.
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCccchhhhcCCcchhhhcc
Confidence 75444444457788888888763
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=3e-08 Score=98.30 Aligned_cols=222 Identities=8% Similarity=0.088 Sum_probs=155.0
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccC-CCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccc
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLV-GPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQL 84 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~-~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l 84 (422)
.|...||.+. +|+.+.+.++- ..+.. .+.. .+|+.+++.++.+..+|... ...+|+.+.++.+ ++.+
T Consensus 148 ~I~~~aF~~~-~L~~i~lp~~l--------~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I 217 (401)
T 4fdw_A 148 SIGDMAFFNS-TVQEIVFPSTL--------EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEI 217 (401)
T ss_dssp EECTTTTTTC-CCCEEECCTTC--------CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEE
T ss_pred EECHHhcCCC-CceEEEeCCCc--------cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hhee
Confidence 4667899994 79999887521 12433 3444 88999999999999998765 6689999999854 7766
Q ss_pred cc-cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccc-cccCCCCCCCCEEEeeCCCCC----CCC
Q 014575 85 WD-DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL-PAGIFRLEFLKELDLWGCSKL----KTL 158 (422)
Q Consensus 85 ~~-~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l----~~~ 158 (422)
.. .+..+.+|+.+.... ++. ......|.. .+|+.+.+.++ +..+ +..+.++++|+.+++.++... ..+
T Consensus 218 ~~~aF~~~~~L~~l~l~~-~l~--~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 218 GSQAFLKTSQLKTIEIPE-NVS--TIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp CTTTTTTCTTCCCEECCT-TCC--EECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred hhhHhhCCCCCCEEecCC-Ccc--Ccccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 54 345566666552110 110 011122445 68999999653 4445 456778999999999987543 124
Q ss_pred c--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCccc-ccccCCCCCcEEEccCCCCCCCCCcccCC
Q 014575 159 P--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSLPDELGN 234 (422)
Q Consensus 159 p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~ 234 (422)
+ .|.++++|+.+.|. ++++.++. .+..+++|+.+.+..+ +..++ ..|.++ +|+.++++++......+..+..
T Consensus 292 ~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp CTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred CHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 4 58899999999998 56888865 6788999999999763 55554 457788 9999999997655545556666
Q ss_pred CC-CCCEEeccCcccc
Q 014575 235 LE-ALDSLIAEGTAIR 249 (422)
Q Consensus 235 l~-~L~~L~l~~n~l~ 249 (422)
++ +++.|++..+.+.
T Consensus 368 ~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 368 FPDDITVIRVPAESVE 383 (401)
T ss_dssp SCTTCCEEEECGGGHH
T ss_pred CCCCccEEEeCHHHHH
Confidence 64 6788887776654
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=5.1e-09 Score=101.41 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=38.4
Q ss_pred hhcCCCCcEEeccC-CCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCC
Q 014575 114 TLHLDKLVNLNLNN-CKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLS 191 (422)
Q Consensus 114 i~~l~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~ 191 (422)
+..+++|+.|+|++ |...+..|..+.++++|+.|+|++|...+..| .|..+++|+.|+|++|.|+.+|..+.....|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 44444555555553 33222222344455555555555544333333 24445555555555555555544332222255
Q ss_pred EEecCCC
Q 014575 192 ALYLDNC 198 (422)
Q Consensus 192 ~L~L~~~ 198 (422)
.|+|.+|
T Consensus 107 ~l~l~~N 113 (347)
T 2ifg_A 107 ELVLSGN 113 (347)
T ss_dssp EEECCSS
T ss_pred EEEeeCC
Confidence 5555553
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=9.9e-11 Score=115.12 Aligned_cols=163 Identities=12% Similarity=0.038 Sum_probs=111.1
Q ss_pred CCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhh-cCCCCcEEeccCCCCCccccccCC-CCCCCC
Q 014575 68 PEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL-HLDKLVNLNLNNCKSLRILPAGIF-RLEFLK 145 (422)
Q Consensus 68 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~-~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~ 145 (422)
+++|++|+|++|.|..... ..+... +. ..++|+.|+|++|.....-...+. .+++|+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~--------~~l~~~-------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~ 129 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC--------TVVAAV-------------LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH--------HHHHHH-------------HSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEE
T ss_pred HhhCCEEEecCCCCCHHHH--------HHHHHH-------------HhhCCCCceEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 4578999999998865311 111100 11 236799999999865433222232 467899
Q ss_pred EEEeeCCCCCCCCc-CC-----CCCCCcCEEEeeCccCcc-----cCccccCCCCCCEEecCCCCCCC----cccccccC
Q 014575 146 ELDLWGCSKLKTLP-EI-----SSAGNIEVMYLNGTAIEE-----LPSSIECLSRLSALYLDNCKRLK----SLPSSLCK 210 (422)
Q Consensus 146 ~L~Ls~~~~l~~~p-~~-----~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~ 210 (422)
.|+|++|....... .+ ...++|++|+|++|.|+. ++..+...++|++|+|++|.... .++..+..
T Consensus 130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 99999986432221 12 345789999999999874 56667888999999999976432 34556777
Q ss_pred CCCCcEEEccCCCCCC----CCCcccCCCCCCCEEeccCcccccc
Q 014575 211 LNSLNFIYLRWCSSLK----SLPDELGNLEALDSLIAEGTAIREV 251 (422)
Q Consensus 211 l~~L~~L~Ls~c~~l~----~lp~~~~~l~~L~~L~l~~n~l~~l 251 (422)
.++|+.|+|++|.... .++..+...++|++|+|++|.|...
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 8899999999986543 3444455668899999999988743
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.73 E-value=8.1e-10 Score=108.56 Aligned_cols=179 Identities=13% Similarity=0.118 Sum_probs=114.5
Q ss_pred CCeeEEEecCCCCCCCCC-----CC--CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCC
Q 014575 47 AEVRYLHWYGYPLKSLPS-----NI--HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDK 119 (422)
Q Consensus 47 ~~Lr~L~l~~~~l~~lP~-----~~--~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~ 119 (422)
..|++|++++|.+..... .+ ..++|++|+|++|.|... +. +.+ ...+++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~--~~------~~l----------------~~~L~~ 127 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA--GL------RTL----------------LPVFLR 127 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH--HH------HHT----------------HHHHHT
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH--HH------HHH----------------HHHHHh
Confidence 678999999998765322 11 236899999999988642 11 111 223446
Q ss_pred CcEEeccCCCCCccccccC-----CCCCCCCEEEeeCCCCCCC----Cc-CCCCCCCcCEEEeeCccCcc-----cCccc
Q 014575 120 LVNLNLNNCKSLRILPAGI-----FRLEFLKELDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIEE-----LPSSI 184 (422)
Q Consensus 120 L~~L~L~~~~~l~~lp~~i-----~~l~~L~~L~Ls~~~~l~~----~p-~~~~l~~L~~L~L~~n~i~~-----lp~~i 184 (422)
|+.|+|++|.....-...+ ...++|++|+|++|..... ++ .+...++|++|+|++|.|+. ++..+
T Consensus 128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 8999999986543322222 2467899999999874321 22 24667889999999999873 45677
Q ss_pred cCCCCCCEEecCCCCCCC----cccccccCCCCCcEEEccCCCCCCCCCcccC---CCC--CCCEEe--ccCcccc
Q 014575 185 ECLSRLSALYLDNCKRLK----SLPSSLCKLNSLNFIYLRWCSSLKSLPDELG---NLE--ALDSLI--AEGTAIR 249 (422)
Q Consensus 185 ~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~---~l~--~L~~L~--l~~n~l~ 249 (422)
...++|+.|+|++|.... .++..+...++|+.|+|++|.....-...+. ... .|+.+. +.++.+.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 788899999999976543 3445566678999999999865433222221 112 166666 6666554
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=7.6e-08 Score=94.00 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=91.7
Q ss_pred hhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CC--CCCCCcCEEEeeC--cc------Cccc
Q 014575 112 SLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EI--SSAGNIEVMYLNG--TA------IEEL 180 (422)
Q Consensus 112 ~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~--~~l~~L~~L~L~~--n~------i~~l 180 (422)
.++..+++|+.|+|++|... .++. + .+++|+.|++..|......- .+ ..+++|+.|+|+. +. +..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44778899999999987433 3444 4 48899999999876332111 23 3688999999863 21 2233
Q ss_pred Cccc--cCCCCCCEEecCCCCCCCcccccc---cCCCCCcEEEccCCCCCC----CCCcccCCCCCCCEEeccCcccc
Q 014575 181 PSSI--ECLSRLSALYLDNCKRLKSLPSSL---CKLNSLNFIYLRWCSSLK----SLPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 181 p~~i--~~l~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~Ls~c~~l~----~lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
...+ ..+++|+.|+|.+|......+..+ ..+++|+.|+|+.|.... .++..+..+++|+.|++++|.+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2333 357899999999876554333323 247899999999865433 24444456789999999999876
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=7.7e-08 Score=93.95 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=26.8
Q ss_pred CCCcCEEEeeCccCcc-cCccc---cCCCCCCEEecCCCCCCC----cccccccCCCCCcEEEccCCC
Q 014575 164 AGNIEVMYLNGTAIEE-LPSSI---ECLSRLSALYLDNCKRLK----SLPSSLCKLNSLNFIYLRWCS 223 (422)
Q Consensus 164 l~~L~~L~L~~n~i~~-lp~~i---~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~c~ 223 (422)
+++|+.|+|.+|.+.. .+..+ ..+++|++|+|+.|.... .++..+..+++|+.|+|++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 4455555555555441 11111 234555555555533221 123333345556666665553
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.04 E-value=6.2e-05 Score=73.91 Aligned_cols=103 Identities=14% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCccc-ccccCCCC
Q 014575 138 IFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLP-SSLCKLNS 213 (422)
Q Consensus 138 i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~ 213 (422)
+.+...|+.+.+.... ..+. .+.++++|+.+.+. +.++.++. .+..+.+|+.+.+..+ +..+. ..|.++++
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence 4456777777776532 2233 46777888888885 55677765 4677888888888762 45554 34777888
Q ss_pred CcEEEccCCCCCCCCC-cccCCCCCCCEEeccCcc
Q 014575 214 LNFIYLRWCSSLKSLP-DELGNLEALDSLIAEGTA 247 (422)
Q Consensus 214 L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~l~~n~ 247 (422)
|+.+.+.. .+..+. ..+.+|++|+.+++.++.
T Consensus 336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 88888864 244554 467888888888888764
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.98 E-value=2e-06 Score=75.64 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=41.2
Q ss_pred hhcCCCCcEEeccCC-CCCc----cccccCCCCCCCCEEEeeCCCCCCCC----c-CCCCCCCcCEEEeeCccCcc----
Q 014575 114 TLHLDKLVNLNLNNC-KSLR----ILPAGIFRLEFLKELDLWGCSKLKTL----P-EISSAGNIEVMYLNGTAIEE---- 179 (422)
Q Consensus 114 i~~l~~L~~L~L~~~-~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~~~----p-~~~~l~~L~~L~L~~n~i~~---- 179 (422)
+...+.|++|+|++| .... .+...+...++|++|+|++|.....- . .+...++|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455667777777776 3321 23334445566666666665432110 0 12233455555555555552
Q ss_pred -cCccccCCCCCCEEec
Q 014575 180 -LPSSIECLSRLSALYL 195 (422)
Q Consensus 180 -lp~~i~~l~~L~~L~L 195 (422)
+...+...+.|++|+|
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 3344444445555555
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=1.1e-06 Score=77.18 Aligned_cols=115 Identities=13% Similarity=0.001 Sum_probs=85.3
Q ss_pred cccCCCCCCCCEEEeeCC-CCCCC----Cc-CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCC-
Q 014575 135 PAGIFRLEFLKELDLWGC-SKLKT----LP-EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLK- 202 (422)
Q Consensus 135 p~~i~~l~~L~~L~Ls~~-~~l~~----~p-~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~- 202 (422)
...+...++|+.|+|++| ..... +. .+...++|++|+|++|.|. .+...+...+.|++|+|++|....
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344667899999999998 53321 11 3566789999999999997 355667777899999999975432
Q ss_pred ---cccccccCCCCCcEEEc--cCCCCCCC----CCcccCCCCCCCEEeccCcccc
Q 014575 203 ---SLPSSLCKLNSLNFIYL--RWCSSLKS----LPDELGNLEALDSLIAEGTAIR 249 (422)
Q Consensus 203 ---~lp~~l~~l~~L~~L~L--s~c~~l~~----lp~~~~~l~~L~~L~l~~n~l~ 249 (422)
.+...+...++|+.|+| ++|..... +.+.+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 25566778889999999 76654332 3445556689999999999875
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=5.3e-05 Score=74.44 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=66.1
Q ss_pred hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCC
Q 014575 114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRL 190 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L 190 (422)
+..+..|+.+.+..+ ....-...+.+...++.+...... ++ .+..+.+|+.+.+..+ ++.++. ++..+.+|
T Consensus 249 f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 249 FYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccceeEEcCCC-cceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCC
Confidence 445555555555543 122222334445555555544321 22 3555667777776543 555543 45667777
Q ss_pred CEEecCCCCCCCccc-ccccCCCCCcEEEccCCCCCCCCC-cccCCCCCCCEEeccC
Q 014575 191 SALYLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSLP-DELGNLEALDSLIAEG 245 (422)
Q Consensus 191 ~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~l~~ 245 (422)
+.+++.. .+..++ ..|.++++|+.+++..+ +..++ ..+.+|.+|+.+++..
T Consensus 323 ~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 323 VSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred CEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 7777764 244443 34666777777777542 33333 3566777777776654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=9e-06 Score=70.60 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCCCEEEeeCCCCCC-CCcCCCCCCCcCEEEeeCc-cCccc-CccccCC----CCCCEEecCCCCCCCcc-cccccCCCC
Q 014575 142 EFLKELDLWGCSKLK-TLPEISSAGNIEVMYLNGT-AIEEL-PSSIECL----SRLSALYLDNCKRLKSL-PSSLCKLNS 213 (422)
Q Consensus 142 ~~L~~L~Ls~~~~l~-~~p~~~~l~~L~~L~L~~n-~i~~l-p~~i~~l----~~L~~L~L~~~~~l~~l-p~~l~~l~~ 213 (422)
..|+.||+++|.... .+..+..+++|+.|+|++| .|+.- -..+..+ ++|++|+|++|..++.- -..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 346666666665221 1123556666666666666 34421 1122332 35777777777654421 122556777
Q ss_pred CcEEEccCCCCCCC
Q 014575 214 LNFIYLRWCSSLKS 227 (422)
Q Consensus 214 L~~L~Ls~c~~l~~ 227 (422)
|+.|+|++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777766553
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=1.3e-05 Score=74.58 Aligned_cols=77 Identities=21% Similarity=0.163 Sum_probs=37.8
Q ss_pred CCCcCEEEeeCccCccc---CccccCCCCCCEEecCCCCCCCcccccccCCC--CCcEEEccCCCCCCCCCc-------c
Q 014575 164 AGNIEVMYLNGTAIEEL---PSSIECLSRLSALYLDNCKRLKSLPSSLCKLN--SLNFIYLRWCSSLKSLPD-------E 231 (422)
Q Consensus 164 l~~L~~L~L~~n~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~Ls~c~~l~~lp~-------~ 231 (422)
+++|+.|+|++|.|+.+ |..++.+++|+.|+|++|+. ..+ ..+..+. +|+.|+|++|+..+.+|+ .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 44555555555555533 23445556666666665432 222 1123333 566666666555554442 2
Q ss_pred cCCCCCCCEEe
Q 014575 232 LGNLEALDSLI 242 (422)
Q Consensus 232 ~~~l~~L~~L~ 242 (422)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34455555543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=9.9e-06 Score=75.37 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCCCCCCEEEeeCCCCCC--CCcC-CCCCCCcCEEEeeCccCcccCccccCCC--CCCEEecCCCCCCCcccc-------
Q 014575 139 FRLEFLKELDLWGCSKLK--TLPE-ISSAGNIEVMYLNGTAIEELPSSIECLS--RLSALYLDNCKRLKSLPS------- 206 (422)
Q Consensus 139 ~~l~~L~~L~Ls~~~~l~--~~p~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~------- 206 (422)
.++++|+.|+|++|.... .+|. +..+++|+.|+|++|.|+.+. .+..+. +|++|+|++|...+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 357899999999987544 2232 457889999999999999773 344444 899999999887776663
Q ss_pred cccCCCCCcEEEc
Q 014575 207 SLCKLNSLNFIYL 219 (422)
Q Consensus 207 ~l~~l~~L~~L~L 219 (422)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3677899998873
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=2.1e-05 Score=68.20 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=14.3
Q ss_pred CcEEeccCCCCCccccccCCCCCCCCEEEeeCCC
Q 014575 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCS 153 (422)
Q Consensus 120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~ 153 (422)
|+.||+++|.....--..+.++++|+.|+|++|.
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 4445555444222211223344445555555544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.73 E-value=0.0013 Score=63.97 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=33.4
Q ss_pred eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccC
Q 014575 8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPH 78 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~ 78 (422)
.|...||.++.+|+.+.|..+- ..+...... .+|..+.+.. .++.++... ...+|+.+.++.
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~v--------~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVASTV--------TSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTTC--------CEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred ChHHHHhhCCCCCCEEEeCCcc--------eEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 4667799999999999986532 112222222 4455554432 244444332 333566666654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.73 E-value=0.00083 Score=65.78 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=13.5
Q ss_pred eeChhhhhCCCCCceEEEec
Q 014575 8 YLHPDTFTKMCKLRFLKFYN 27 (422)
Q Consensus 8 ~l~~~~f~~m~~L~~L~l~~ 27 (422)
.|...||.++++|+.+.|..
T Consensus 61 sIg~~AF~~c~~L~~i~lp~ 80 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS 80 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT
T ss_pred EhHHHHhhCCCCceEEEeCC
Confidence 46667777777777777643
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=0.0014 Score=64.25 Aligned_cols=88 Identities=13% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc-cccCCCCCcEEEccCCCCCCCCC-cccCCCCCC
Q 014575 161 ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLP-DELGNLEAL 238 (422)
Q Consensus 161 ~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L 238 (422)
+..+++|+.+.+..+-.+--...+..+.+|+.+.+.. .+..++. .|.++++|+.++|.. .+..+. ..+.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCC
Confidence 5567788888886554332234577889999999975 4566665 477899999999975 244443 468889999
Q ss_pred CEEeccCcccccccc
Q 014575 239 DSLIAEGTAIREVYF 253 (422)
Q Consensus 239 ~~L~l~~n~l~~lp~ 253 (422)
+.+.+..+ ++.++.
T Consensus 337 ~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPE 350 (394)
T ss_dssp CEEEECTT-CCBCCG
T ss_pred CEEEECcc-cCEEhH
Confidence 99998644 666654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.98 E-value=0.017 Score=55.78 Aligned_cols=55 Identities=27% Similarity=0.374 Sum_probs=24.6
Q ss_pred CCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecC
Q 014575 140 RLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLD 196 (422)
Q Consensus 140 ~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~ 196 (422)
+..+|+.+.+... +..++ .+..+++|+.+.+.++.++.++. .+.++.+|+.+.|.
T Consensus 261 ~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 261 NCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred eeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4444555554332 22222 24444455555555444544432 34444455555544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.40 E-value=0.01 Score=52.26 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=48.4
Q ss_pred hhcCCCCcEEeccCCCCCcc-----ccccCCCCCCCCEEEeeCCCCCCC----Cc-CCCCCCCcCEEEeeCccCc-----
Q 014575 114 TLHLDKLVNLNLNNCKSLRI-----LPAGIFRLEFLKELDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIE----- 178 (422)
Q Consensus 114 i~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~~~~l~~----~p-~~~~l~~L~~L~L~~n~i~----- 178 (422)
+..-+.|+.|+|++++.++. +-..+..-+.|+.|+|++|..... +. .+..-+.|+.|+|+.|.|+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 44556788888887533332 334455556777777777753311 11 1223356777777777776
Q ss_pred ccCccccCCCCCCEEecCCC
Q 014575 179 ELPSSIECLSRLSALYLDNC 198 (422)
Q Consensus 179 ~lp~~i~~l~~L~~L~L~~~ 198 (422)
.+-..+..-+.|+.|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 23344444555777777653
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.27 E-value=0.033 Score=45.38 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=32.4
Q ss_pred EEEeeCCCCC-CCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCC
Q 014575 146 ELDLWGCSKL-KTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCK 199 (422)
Q Consensus 146 ~L~Ls~~~~l-~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~ 199 (422)
.++.++.... ..+| .+.. +|+.|+|++|+|+.+|.. +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~--~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCT--TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCCc--CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555554322 1555 3443 677777777777777654 4667777777777753
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.95 E-value=0.044 Score=44.62 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=22.3
Q ss_pred EEEeeCccCc--ccCccccCCCCCCEEecCCCCCCCccccc-ccCCCCCcEEEccC
Q 014575 169 VMYLNGTAIE--ELPSSIECLSRLSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRW 221 (422)
Q Consensus 169 ~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~ 221 (422)
.++.++++++ .+|..+ -.+|+.|+|++| .+..+|.. +..+++|+.|+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecC
Confidence 4555556655 555432 124555555553 23333332 33344444444443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.77 E-value=0.0089 Score=52.58 Aligned_cols=111 Identities=18% Similarity=0.042 Sum_probs=75.1
Q ss_pred CCCCCCCCEEEeeCCCCCCCC-----c-CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCC----
Q 014575 138 IFRLEFLKELDLWGCSKLKTL-----P-EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLK---- 202 (422)
Q Consensus 138 i~~l~~L~~L~Ls~~~~l~~~-----p-~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~---- 202 (422)
+.+-++|+.|+|+++..++.- - .+..-+.|+.|+|++|.|. .+-..+..-+.|+.|+|+.|....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445678999999986334321 1 2556678999999999998 355566677899999999965432
Q ss_pred cccccccCCCCCcEEEccCCC--CCCC-----CCcccCCCCCCCEEeccCccc
Q 014575 203 SLPSSLCKLNSLNFIYLRWCS--SLKS-----LPDELGNLEALDSLIAEGTAI 248 (422)
Q Consensus 203 ~lp~~l~~l~~L~~L~Ls~c~--~l~~-----lp~~~~~l~~L~~L~l~~n~l 248 (422)
.+-+.+..-+.|+.|+|++|. .++. +-+.+..=++|+.|+++.+.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 233445556789999998753 2331 223334446889999987754
Done!