BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014576
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 361 bits (926), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 180/416 (43%), Positives = 272/416 (65%), Gaps = 26/416 (6%)
Query: 2 RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQ 61
R + D T K EI++LC+EA +NE++V LSK+RGQL+ A+ A+VQ++M Y+DQ
Sbjct: 56 RQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQ 115
Query: 62 TPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF 121
D+ ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+
Sbjct: 116 ITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETY 175
Query: 122 GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 181
G M K EKI F ++Q+R+C++ +D++RAQ++ K++ + D ++
Sbjct: 176 GTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQ-------------- 221
Query: 182 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKIC 241
+LK Y++ MIRY+SH+ +Y+EI RCY +IY+ P +++D Q + L+ IC
Sbjct: 222 ---------DLKIDYFKQMIRYFSHSANYIEIARCYLSIYDTPSVEKDTPQLLQTLKYIC 272
Query: 242 WYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENE 301
Y++L+ QS LLN E K L++I N++ LL Q T+E+I+W++ + K E +++
Sbjct: 273 IYVILSASSNEQSDLLNRVYEFKPLTDIQNYKDLLNQFKTLELIRWSTFFELNKPELDSQ 332
Query: 302 TNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVV 361
T A EDLR+R+IEHNI V+S YY +I+ RLAELL LS+ E+EK +SD+V
Sbjct: 333 TVF---KTEPNAWEDLRKRVIEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVS 389
Query: 362 SKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHK 417
+K + AKIDRP GI F D N +LN+WA N+ LLDLVEK+ H + +E M+HK
Sbjct: 390 NKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTNHLVQREFMLHK 445
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/422 (43%), Positives = 269/422 (63%), Gaps = 30/422 (7%)
Query: 2 RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQ 61
R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLKQAV MVQQ Y+++
Sbjct: 55 RTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEE 114
Query: 62 TPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF 121
DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+
Sbjct: 115 ITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETY 174
Query: 122 GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 181
G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + ++
Sbjct: 175 GSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-------------- 220
Query: 182 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKIC 241
+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L+ +
Sbjct: 221 ---------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVV 271
Query: 242 WYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTY-----KD 296
Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y K
Sbjct: 272 LYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKG 331
Query: 297 EFENETNMLGGSL--GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEK 354
E+ + GS G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+ E+E
Sbjct: 332 SLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEA 391
Query: 355 HLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETM 414
LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I KE M
Sbjct: 392 FLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEM 451
Query: 415 VH 416
+H
Sbjct: 452 IH 453
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 359 bits (922), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/422 (43%), Positives = 269/422 (63%), Gaps = 30/422 (7%)
Query: 2 RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQ 61
R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLKQAV MVQQ Y+++
Sbjct: 55 RTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEE 114
Query: 62 TPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF 121
DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+
Sbjct: 115 ITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETY 174
Query: 122 GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 181
G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + ++
Sbjct: 175 GSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-------------- 220
Query: 182 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKIC 241
+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L+ +
Sbjct: 221 ---------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVV 271
Query: 242 WYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTY-----KD 296
Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y K
Sbjct: 272 LYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKG 331
Query: 297 EFENETNMLGGSL--GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEK 354
E+ + GS G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+ E+E
Sbjct: 332 SLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEA 391
Query: 355 HLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETM 414
LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I KE M
Sbjct: 392 FLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEM 451
Query: 415 VH 416
+H
Sbjct: 452 IH 453
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 358 bits (920), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 184/422 (43%), Positives = 269/422 (63%), Gaps = 30/422 (7%)
Query: 2 RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQ 61
R + D+ T + + I+++C+EAK+W LNE I+ LSK+R QLKQAV MVQQ Y+++
Sbjct: 55 RTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEE 114
Query: 62 TPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF 121
DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+
Sbjct: 115 ITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETY 174
Query: 122 GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 181
G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + ++
Sbjct: 175 GSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-------------- 220
Query: 182 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKIC 241
+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L+ +
Sbjct: 221 ---------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVV 271
Query: 242 WYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFEN- 300
Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y E
Sbjct: 272 LYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKG 331
Query: 301 -----ETNMLGGS-LGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEK 354
T++ G + G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+ E+E
Sbjct: 332 SLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEA 391
Query: 355 HLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETM 414
LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I KE M
Sbjct: 392 FLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEM 451
Query: 415 VH 416
+H
Sbjct: 452 IH 453
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 357 bits (915), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 181/422 (42%), Positives = 267/422 (63%), Gaps = 30/422 (7%)
Query: 2 RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQ 61
R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLKQAV MVQQ Y+++
Sbjct: 55 RTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEE 114
Query: 62 TPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF 121
DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+
Sbjct: 115 ITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETY 174
Query: 122 GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 181
G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + ++
Sbjct: 175 GSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-------------- 220
Query: 182 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKIC 241
LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L+ +
Sbjct: 221 ---------NLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESDKWQQALKSVV 271
Query: 242 WYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFEN- 300
Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y E
Sbjct: 272 LYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGVELRKG 331
Query: 301 -----ETNMLGGS-LGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEK 354
T++ + G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+ E+E
Sbjct: 332 SSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEA 391
Query: 355 HLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETM 414
LS++VV+K + AK+DR G++ FQ KD N++LN W+ L L+ LV K+ H I KE M
Sbjct: 392 FLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEM 451
Query: 415 VH 416
+H
Sbjct: 452 IH 453
>sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN5 PE=1 SV=3
Length = 445
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/417 (39%), Positives = 255/417 (61%), Gaps = 25/417 (5%)
Query: 2 RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYI-- 59
R + D+A +K+ + +I+ L W LNEQ+ LSKK GQLK ++ M+Q+ M+Y+
Sbjct: 47 RQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106
Query: 60 DQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVE 119
++ DL+TRI +I+T+ V+ KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VE
Sbjct: 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE 166
Query: 120 TFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVV 179
T+G+M +EKI FILEQ+ L + + DY +A +LSRKI + F K PK
Sbjct: 167 TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF--------KNPKYES--- 215
Query: 180 EEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRK 239
LK YY L+++ H +YLE+ + + IY+ IK D A+W PVL
Sbjct: 216 ------------LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263
Query: 240 ICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE 299
I ++LVL+P+ +Q+ L++ D NL ++ + L+K T E+++W + TY+
Sbjct: 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323
Query: 300 NETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDM 359
+ GG EDL++R+IEHN+ V+S+YYSRITL RL ELL L+ + E ++SD+
Sbjct: 324 EDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDL 383
Query: 360 VVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 416
V + AK++RP IV F+ K+S+ +LN W+ N+++LL+ +E H I KE ++H
Sbjct: 384 VNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440
>sp|Q9UTM3|RPN5_SCHPO 26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn5a PE=1 SV=1
Length = 443
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/417 (37%), Positives = 240/417 (57%), Gaps = 24/417 (5%)
Query: 1 MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYID 60
+R + D + K + I L F A D++ LNEQ+V+L KK GQLKQ++T++VQ M Y+
Sbjct: 42 VRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLP 101
Query: 61 QTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVET 120
DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I A +++ VET
Sbjct: 102 GIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVET 161
Query: 121 FGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVE 180
+G+ EK+AFIL+QVRL L R DY A ++KI+ + F+ +
Sbjct: 162 YGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKE---------------- 205
Query: 181 EAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKI 240
D+ S LK YYE IR H++ YL++C+ Y+A+Y+ ++EDP +W +L +
Sbjct: 206 ----DVQS---LKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILENV 258
Query: 241 CWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEF-E 299
+ +L P+D Q+ LL+ D L+ +P + L+K + E+++W + Y
Sbjct: 259 VCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALRS 318
Query: 300 NETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDM 359
N G K +LR+R+IEHNI VV+ YYSRI RL LL +S E E+ L D+
Sbjct: 319 NPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCDL 378
Query: 360 VVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 416
+ AKIDRP ++ F+ +++ + LN W N+ +LL +EK I KE M++
Sbjct: 379 IAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMN 435
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 142/339 (41%), Gaps = 46/339 (13%)
Query: 74 TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTE-KIAF 132
TL V+ I E + A + LA I E +AA ++ + +ET E K+
Sbjct: 95 TLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVECKLGT 154
Query: 133 ILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLEL 192
L+ RL L+ D V+A++ + S + A+ + E EL
Sbjct: 155 YLKIARLYLEDNDSVQAELFINRAS--LLQAETNSE----------------------EL 190
Query: 193 KRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIK-EDPAQWMPVLRKICWYLVLAPHDP 251
+ +Y R + ++E + Y E+ Y K D + M L+K VLA
Sbjct: 191 QVLYKVCYARVLDYRRKFIEAAQRYN---ELSYRKIVDQGERMTALKKALICTVLASAGQ 247
Query: 252 MQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGA 311
+S +L + +D+ +P + +L K + +I+ + L EFE + +
Sbjct: 248 QRSRMLATLFKDERCQHLPAYGILEKMYLE-RIIRRSEL-----QEFEALLQDHQKAATS 301
Query: 312 KAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR 371
+ L + + EHN+L SK Y+ IT + L LL + +AEK S M+ + ID+
Sbjct: 302 DGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQ 361
Query: 372 PQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 410
IV F ++ ++L W ++ L C+Q++
Sbjct: 362 ISAIVHF----ENRELLPQWDRQIQSL-------CYQVN 389
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 221 YEIPYIKEDP-AQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQL 279
YE+ ++ P + + L K ++LA P +S LL +D+ + +F L+ K
Sbjct: 222 YELSATEQLPNSDKLTALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMY 281
Query: 280 VTMEVIQWTSLWNTYKDEFENETNMLGGSLGA-KAAEDLRQRII-EHNILVVSKYYSRIT 337
+T + +KDE E + L A + E + + +I EHNI +S+ Y I+
Sbjct: 282 LTKVI---------HKDELEEFEHQLQDHQKADEHGESILKGVIQEHNITAISQLYINIS 332
Query: 338 LKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
K L +LL + + AE +M+ S+ L ID+ GI+ F+ DSN
Sbjct: 333 FKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQTNGILHFE---DSN 377
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L + +IEHN+L SK Y+ IT L LL + ++AEK S MV + L+ ID+ + ++
Sbjct: 296 LDRAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERLI 355
Query: 377 CFQVAKDSNDILNSWAMNLEKL 398
F+ DS L W +E L
Sbjct: 356 QFENVGDS---LTQWDKKIEGL 374
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 225
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 226 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 285
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 286 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 345
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 346 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 225
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 226 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 285
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 286 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 345
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 346 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 225
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 226 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 285
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 286 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 345
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 346 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 225
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 226 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 285
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 286 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 345
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 346 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 225
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 226 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 285
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 286 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 345
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 346 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 225
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 226 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 285
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 286 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 345
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 346 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 225
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 226 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 285
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 286 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 345
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 346 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Query: 189 LLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAP 248
+L++KR + E +RYY I + + I E+ + C +LA
Sbjct: 186 ILDMKRKFLEAALRYYG-------ISQIEQRQIGDEEIDENALEQALSAAVTCT--ILAG 236
Query: 249 HDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGS 308
P +S +L + +D+ S++ + +L K V +E I + + +E S
Sbjct: 237 AGPQRSRVLATLYKDERCSKLKIYPILQK--VYLERILRRPEIDAFSEELRPHQK---AS 291
Query: 309 LGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368
L K+ L + +IEHN+L SK Y+ I L LL + ++AEK ++M+ +
Sbjct: 292 LPDKSTV-LDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGS 350
Query: 369 IDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
ID+ + ++ F+ D + L W + L
Sbjct: 351 IDQEEAVIHFE---DDVEELQQWDQQISGL 377
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 19/233 (8%)
Query: 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 225
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKSI 216
Query: 226 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 285
+ E + + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--TERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 286 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 345
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 346 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPPAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREPLPTWDKQIQSL 377
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 177 NVVEEAPADIPSLLELKRIYYEL-MIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMP 235
N++ D P L ++++L R N +L + Y I P I E+ + +
Sbjct: 190 NIIHNVADDNPVL----NLHFKLSAARIQDSNRQFLAASQSYYEISLSPAIAEE--ERLH 243
Query: 236 VLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQ-----LVTMEVIQWTSL 290
L VLAP P +S +L +D+ + + F +L K L EV ++
Sbjct: 244 TLSMAIKCAVLAPAGPPRSRVLARLYKDERSASLEEFGILEKMFLDRLLARAEVEKFAQG 303
Query: 291 WNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCL-SI 349
+ + T G ++ AKA ++EHN+L VS+ Y I L L L S
Sbjct: 304 LAPH----QLATTSDGSTVLAKA-------MVEHNLLAVSRLYRNIGFDALGSWLGLDSG 352
Query: 350 QEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 379
+AE+ + M+ L ID+ I+ F+
Sbjct: 353 NKAEEITARMIEQGRLAGSIDQIDRIIYFE 382
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 22/183 (12%)
Query: 245 VLAPHDPMQSSLLNSTLEDKNLSEIPNF----RLLLKQLVTMEVIQWTSLWNTYKDEFEN 300
VLAP P +S L + +D + + F ++ L +L+T E + F
Sbjct: 235 VLAPAGPQRSRTLATLYKDDRATSVEEFGILEKMFLDRLLTPEEVSA----------FAQ 284
Query: 301 ETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCL-------SIQEAE 353
+ A L + ++EHN++ SK Y I L +L L + ++AE
Sbjct: 285 RLAPHQLAQTADGTTVLDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAGEKAE 344
Query: 354 KHLSDMVVSKALVAKIDRPQGIVCFQV-AKDSNDILNSWAMNLEKLLDLVEKSCHQIHKE 412
+ + MV L ID+ GI+ F+ + + W ++ L + VE+ I +
Sbjct: 345 AYAARMVEQGRLSGSIDQIDGIIYFESNTTATGRHIRQWDAGVQGLSEGVERVATNIAEG 404
Query: 413 TMV 415
+V
Sbjct: 405 HLV 407
>sp|A4R796|EIF3E_MAGO7 Eukaryotic translation initiation factor 3 subunit E OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=INT6 PE=3 SV=1
Length = 446
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 302 TNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVV 361
T+ S+G + R E K ++RI LKRL+E L L++ E EK + +++
Sbjct: 343 TDFFLMSIGDSFVDAARHLFFES----YCKIHARIDLKRLSEQLGLNVDEGEKWIVNLIR 398
Query: 362 SKALVAKIDRPQGIVC 377
L AKID +G V
Sbjct: 399 DTRLDAKIDFQEGTVV 414
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD 383
Y+R TL +++ + +S+ EA+ LS +++ K L AKID+ G V + A D
Sbjct: 370 YTRFTLSFISKHIKISVTEAQDILSFLILDKKLNAKIDQESGTVVVESASD 420
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L ++E N+ + + +SR+ + +AEL+ L + EK LS M++ K +D QG
Sbjct: 322 LYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQMILDKKFAGTLD--QGAG 379
Query: 377 CFQVAKD 383
C + +D
Sbjct: 380 CLIIFED 386
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374
L ++E N+L V + +SR+ + +AEL+ LS + E LS M++ K +D+ G
Sbjct: 324 LYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSG 381
>sp|A8WWU0|EIF3C_CAEBR Eukaryotic translation initiation factor 3 subunit C
OS=Caenorhabditis briggsae GN=eif-3.C PE=3 SV=1
Length = 894
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
+L S YS ++LK+LA L LS ++ +S M++ + L A +D P + + S
Sbjct: 744 LLTYSTVYSTVSLKKLASLFDLSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEPSR 803
Query: 386 DILNSWAMNLEKLLDLVEKSCHQI 409
L A+NL L + ++ QI
Sbjct: 804 --LQMLALNLSDKLQTLAENNEQI 825
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 38/60 (63%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L ++E N++ V + +SR+ ++ ++EL+ LS + E+ LS M++ + +D+ +G++
Sbjct: 325 LYDNLLEQNLIRVIEPFSRVQIEHISELIKLSKGDVERKLSQMILDQKFHGILDQGEGVL 384
>sp|O02328|EIF3C_CAEEL Eukaryotic translation initiation factor 3 subunit C
OS=Caenorhabditis elegans GN=eif-3.C PE=3 SV=2
Length = 898
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
+L S Y+ ++LK+LA+L LS ++ +S M++ + L A +D P + + S
Sbjct: 749 LLTYSTVYATVSLKKLADLFELSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEPSR 808
Query: 386 DILNSWAMNLEKLLDLVEKSCHQI 409
L A+NL L + ++ QI
Sbjct: 809 --LQMLALNLSDKLQTLAENNEQI 830
>sp|B4MRZ8|EIF3C_DROWI Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
willistoni GN=eIF3-S8 PE=3 SV=1
Length = 919
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
+ S Y+ I++ LAE+ L +Q+ +S M++++ L+A +D P V ++ S
Sbjct: 759 LFTYSNVYTSISIPSLAEMYELPVQKVHSIISKMIINEELMASLDDPSETVVMHRSEPSR 818
Query: 386 DILNSWAMNL-EKLLDLVE 403
L + AM +K+ +LV+
Sbjct: 819 --LQALAMQFVDKVTNLVD 835
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 289 SLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLS 348
+L N + + F + NM L + L ++ NI ++K + ++L+ +A + LS
Sbjct: 277 NLVNKHSETFTRDNNM---GLVKQCLSSLYKK----NIQRLTKTFLTLSLQDMASRVQLS 329
Query: 349 -IQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM 393
QEAEK++ M+ + A I++ G+VCF D+ + N+ AM
Sbjct: 330 GPQEAEKYVLHMIEDGEIFASINQKDGMVCFH---DNPEKYNNPAM 372
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 321 IIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
++E N+ + + YSR+ + +AE + L + + EK LS M++ K +D+ +G++
Sbjct: 330 MLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVL 385
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L ++E N++ V + +SR+ ++ ++ L+ LS + E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL 385
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L ++E N++ V + +SR+ ++ ++ L+ LS + E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL 385
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L ++E N++ V + +SR+ ++ ++ L+ LS + E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL 385
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L ++E N++ V + +SR+ ++ ++ L+ LS + E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL 385
>sp|O13895|CSN4_SCHPO COP9 signalosome complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn4 PE=1 SV=1
Length = 377
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 315 EDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374
ED R +E NIL +S+++ + LA+ LS ++ + ++DMV+ + L A ID+ +G
Sbjct: 289 EDGRH-FLETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASIDQCEG 347
Query: 375 IVCF 378
+ F
Sbjct: 348 YITF 351
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 325 NILVVSKYYSRITLKRLAELLCLS-IQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD 383
NI ++K + ++L+ +A + LS QEAEK++ M+ + A I++ G+VCF D
Sbjct: 306 NIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDGMVCFH---D 362
Query: 384 SNDILNSWAM 393
S + N+ AM
Sbjct: 363 SPEKYNNPAM 372
>sp|B3MIF1|EIF3C_DROAN Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
ananassae GN=eIF3-S8 PE=3 SV=1
Length = 906
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
+ S Y+ I++ LA++ L +Q+ +S M++++ L+A +D P V ++ S
Sbjct: 760 LFTYSNVYTSISIPSLAQMYELPVQKVHSIISKMIINEELMASLDDPTETVVMHRSEPSR 819
Query: 386 DILNSWAMNL-EKLLDLVE 403
L + AM +K+ +LV+
Sbjct: 820 --LQALAMQFVDKVTNLVD 836
>sp|Q8SYG2|CSN3_DROME COP9 signalosome complex subunit 3 OS=Drosophila melanogaster
GN=CSN3 PE=2 SV=2
Length = 445
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 294 YKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCL-SIQEA 352
Y + F + NM L + A L +R NI ++K + ++L +A + L S EA
Sbjct: 298 YSEAFTRDNNM---GLAKQVATSLYKR----NIQRLTKTFLTLSLSDVASRVQLASAVEA 350
Query: 353 EKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM--NLEKLLDLVEKSCHQIH 410
E+++ +M+ S + A I++ G+V F KD + NS M N++ + V QI+
Sbjct: 351 ERYILNMIKSGEIYASINQKDGMVLF---KDDPEKYNSPEMFLNVQNNITHVLDQVRQIN 407
Query: 411 K 411
K
Sbjct: 408 K 408
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L ++E N++ V + +SR+ + ++ L+ L E E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIDHISSLIKLPKPEVERKLSQMILDKKFHGILDQGEGVL 385
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 325 NILVVSKYYSRITLKRLAELLCLS-IQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD 383
NI ++K + ++L+ +A + LS QEAEK++ M+ + A I++ G+VCF D
Sbjct: 306 NIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIYASINQKDGMVCFH---D 362
Query: 384 SNDILNSWAM 393
+ + N+ AM
Sbjct: 363 NPEKYNNPAM 372
>sp|Q6PFQ2|EIF3C_DANRE Eukaryotic translation initiation factor 3 subunit C OS=Danio rerio
GN=eif3c PE=1 SV=1
Length = 926
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
+ S Y I+++ L+E+ L + +S M++++ L+A +D+P V + ++
Sbjct: 791 LFTYSSVYDSISMETLSEMFELELPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTS 850
Query: 386 DILNSWAMNL-EKLLDLVEKS 405
L + A+ L EKL LVE +
Sbjct: 851 --LQNMALQLAEKLGGLVENN 869
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 325 NILVVSKYYSRITLKRLAELLCLS-IQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD 383
NI ++K + ++L+ +A + LS QEAEK++ M+ + A I++ G+VCF D
Sbjct: 306 NIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDGMVCFH---D 362
Query: 384 SNDILNSWAM 393
+ + N+ AM
Sbjct: 363 NPEKYNNPAM 372
>sp|Q6P1V4|EIF3C_XENTR Eukaryotic translation initiation factor 3 subunit C OS=Xenopus
tropicalis GN=eif3c PE=2 SV=1
Length = 922
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
+ S Y I + L ++ L I +S M++++ L+A +D+P V + S+
Sbjct: 793 LFTYSSVYDSIRMGILGDMFQLEIPTVHSIISKMIINEELMASLDQPTQTVVMHGTEPSS 852
Query: 386 DILNSWAMNL-EKLLDLVEKS 405
L + A+ L EKL +LVE +
Sbjct: 853 --LQNTALQLAEKLGNLVENN 871
>sp|Q4QR58|EIF3C_XENLA Eukaryotic translation initiation factor 3 subunit C OS=Xenopus
laevis GN=eif3c PE=2 SV=1
Length = 926
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
+ S Y I + L ++ L I +S M++++ L+A +D+P V + S+
Sbjct: 794 LFTYSSVYDSIRMGILGDMFQLEIPTVHSIISKMIINEELMASLDQPTQTVVMHGTEPSS 853
Query: 386 DILNSWAMNL-EKLLDLVEKS 405
L + A+ L EKL +LVE +
Sbjct: 854 --LQNTALQLAEKLGNLVENN 872
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 311 AKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370
++ ++L ++I + +L + YS I + +AE + +S E + L +++ K + KID
Sbjct: 428 SRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKID 487
Query: 371 RPQGIVCFQVAKDSNDIL 388
+ +GIV +D N IL
Sbjct: 488 QNEGIVRILDERDENAIL 505
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 317 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
L ++E N++ V + +SR+ + +A L+ LS + E+ LS M++ K +D+ + ++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQITHIAGLIKLSKNDVERKLSQMILDKKFHGILDQGEDVL 385
>sp|Q7S519|EIF3E_NEUCR Eukaryotic translation initiation factor 3 subunit E OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=int-6 PE=3 SV=1
Length = 443
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 331 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376
K ++RI+LK L+ L L+ +AEK + +++ L AKID +G V
Sbjct: 365 KIHARISLKDLSARLGLNNDDAEKWIVNLIRDTRLDAKIDYKEGTV 410
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 197 YELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSL 256
Y L+ YS + ++ E+ R K + + +K W+ V K+C ++ P++S
Sbjct: 512 YTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDD 571
Query: 257 LNSTLE 262
L TL+
Sbjct: 572 LYKTLD 577
>sp|Q28Z41|EIF3C_DROPS Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
pseudoobscura pseudoobscura GN=eIF3-S8 PE=3 SV=1
Length = 911
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 385
+ S Y+ I++ LA++ L + + +S M++++ L+A +D P V ++ S
Sbjct: 761 LFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEELMASLDDPSETVVMHRSEPSR 820
Query: 386 DILNSWAMNL-EKLLDLVE 403
L + AM +K+ +LV+
Sbjct: 821 --LQALAMQFVDKVTNLVD 837
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,824,270
Number of Sequences: 539616
Number of extensions: 5793261
Number of successful extensions: 18762
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 18667
Number of HSP's gapped (non-prelim): 138
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)