Query 014576
Match_columns 422
No_of_seqs 177 out of 565
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 5.8E-90 2E-94 711.9 25.1 398 1-421 46-445 (445)
2 3txn_A 26S proteasome regulato 100.0 1.8E-42 6.2E-47 349.9 34.0 361 12-405 20-393 (394)
3 4b4t_R RPN7, 26S proteasome re 100.0 1.7E-42 5.8E-47 355.9 14.0 368 6-410 42-422 (429)
4 4b4t_Q 26S proteasome regulato 100.0 5.6E-40 1.9E-44 330.3 28.2 371 11-416 55-434 (434)
5 4b4t_O 26S proteasome regulato 99.9 3.4E-21 1.2E-25 195.4 21.3 284 94-408 80-390 (393)
6 1ufm_A COP9 complex subunit 4; 99.8 9.4E-22 3.2E-26 155.9 4.7 74 310-383 5-78 (84)
7 4b4t_S RPN3, 26S proteasome re 99.8 1.1E-18 3.8E-23 179.9 16.0 247 125-407 226-477 (523)
8 3t5x_A PCI domain-containing p 99.4 4E-12 1.4E-16 117.2 13.8 171 191-381 11-193 (203)
9 3t5v_B Nuclear mRNA export pro 99.0 4.1E-09 1.4E-13 108.0 16.4 247 103-381 139-429 (455)
10 4b0z_A RPN12, 26S proteasome r 97.8 0.00091 3.1E-08 62.2 17.1 204 138-380 15-228 (229)
11 3chm_A COP9 signalosome comple 97.8 0.0002 7E-09 63.5 11.4 128 239-382 28-158 (169)
12 3ro3_A PINS homolog, G-protein 97.1 0.051 1.7E-06 44.2 18.0 156 5-223 3-158 (164)
13 3sf4_A G-protein-signaling mod 97.0 0.13 4.6E-06 49.0 22.0 111 89-223 186-296 (406)
14 3nf1_A KLC 1, kinesin light ch 97.0 0.22 7.4E-06 45.5 22.9 195 3-223 19-224 (311)
15 3ro2_A PINS homolog, G-protein 96.9 0.096 3.3E-06 48.1 19.9 111 89-223 182-292 (338)
16 3sf4_A G-protein-signaling mod 96.9 0.14 4.9E-06 48.8 21.2 111 89-223 226-336 (406)
17 4a1s_A PINS, partner of inscut 96.9 0.12 4.3E-06 49.8 20.8 112 89-224 262-373 (411)
18 4a1s_A PINS, partner of inscut 96.8 0.11 3.8E-06 50.1 20.2 111 89-223 222-332 (411)
19 3edt_B KLC 2, kinesin light ch 96.6 0.33 1.1E-05 43.3 20.8 214 5-223 37-281 (283)
20 3ro2_A PINS homolog, G-protein 96.6 0.4 1.4E-05 43.8 22.5 191 6-223 38-252 (338)
21 3nf1_A KLC 1, kinesin light ch 96.6 0.41 1.4E-05 43.6 22.7 209 6-222 64-306 (311)
22 3ro3_A PINS homolog, G-protein 96.5 0.087 3E-06 42.7 14.4 112 88-223 7-118 (164)
23 2ifu_A Gamma-SNAP; membrane fu 96.4 0.63 2.1E-05 43.7 24.4 188 4-221 29-222 (307)
24 2vq2_A PILW, putative fimbrial 96.4 0.29 9.8E-06 42.3 18.0 173 6-223 3-176 (225)
25 3as5_A MAMA; tetratricopeptide 96.3 0.34 1.1E-05 40.2 17.3 171 6-223 3-173 (186)
26 3u3w_A Transcriptional activat 96.3 0.73 2.5E-05 42.7 21.3 186 12-224 76-267 (293)
27 3u3w_A Transcriptional activat 96.3 0.15 5.1E-06 47.6 16.3 168 29-222 5-183 (293)
28 3uq3_A Heat shock protein STI1 96.1 0.68 2.3E-05 40.8 20.1 143 9-158 3-167 (258)
29 3uq3_A Heat shock protein STI1 96.0 0.27 9.1E-06 43.5 16.2 99 89-223 138-236 (258)
30 3qky_A Outer membrane assembly 96.0 0.89 3E-05 41.1 20.1 184 9-224 13-225 (261)
31 3ulq_A Response regulator aspa 95.9 0.96 3.3E-05 43.4 20.9 153 4-159 136-293 (383)
32 2ho1_A Type 4 fimbrial biogene 95.9 0.86 2.9E-05 40.4 19.6 98 90-223 141-238 (252)
33 1qqe_A Vesicular transport pro 95.9 0.89 3E-05 42.3 19.8 111 89-224 76-188 (292)
34 4eqf_A PEX5-related protein; a 95.7 1.5 5E-05 41.4 21.0 240 12-299 66-309 (365)
35 4ga2_A E3 SUMO-protein ligase 95.7 0.1 3.6E-06 43.8 11.2 93 95-223 2-94 (150)
36 2q7f_A YRRB protein; TPR, prot 95.6 0.82 2.8E-05 40.0 17.4 167 10-223 56-222 (243)
37 1elr_A TPR2A-domain of HOP; HO 95.6 0.3 1E-05 38.1 13.0 107 89-224 3-109 (131)
38 3vtx_A MAMA; tetratricopeptide 95.5 0.93 3.2E-05 38.3 18.7 167 10-223 4-170 (184)
39 3mkr_A Coatomer subunit epsilo 95.5 0.53 1.8E-05 44.2 16.8 161 12-223 35-195 (291)
40 3gw4_A Uncharacterized protein 95.5 0.97 3.3E-05 38.4 19.7 117 89-230 65-183 (203)
41 2qfc_A PLCR protein; TPR, HTH, 95.5 1.5 5.2E-05 40.5 20.1 184 12-223 76-266 (293)
42 3hym_B Cell division cycle pro 95.4 0.49 1.7E-05 43.5 15.8 104 90-223 193-299 (330)
43 3ieg_A DNAJ homolog subfamily 95.3 1.8 6.2E-05 39.9 22.0 101 92-224 236-336 (359)
44 3q15_A PSP28, response regulat 95.3 2.2 7.6E-05 40.9 20.7 151 4-160 134-291 (378)
45 2ho1_A Type 4 fimbrial biogene 95.3 1.5 5E-05 38.8 20.1 171 8-223 34-204 (252)
46 4b4t_Q 26S proteasome regulato 95.2 0.86 2.9E-05 44.2 17.6 179 16-223 9-204 (434)
47 4gcn_A Protein STI-1; structur 95.1 0.87 3E-05 36.8 14.7 106 89-223 7-112 (127)
48 2y4t_A DNAJ homolog subfamily 95.1 2.6 8.9E-05 40.7 20.7 108 90-223 211-324 (450)
49 3edt_B KLC 2, kinesin light ch 95.0 1.3 4.5E-05 39.3 17.1 151 5-158 79-280 (283)
50 1qqe_A Vesicular transport pro 95.0 2.2 7.6E-05 39.5 23.3 189 7-223 33-228 (292)
51 3gw4_A Uncharacterized protein 95.0 0.75 2.6E-05 39.1 14.8 112 89-223 25-136 (203)
52 2xpi_A Anaphase-promoting comp 95.0 3.5 0.00012 41.6 22.4 169 91-299 408-578 (597)
53 2xpi_A Anaphase-promoting comp 95.0 0.82 2.8E-05 46.4 17.4 103 91-223 476-579 (597)
54 3q15_A PSP28, response regulat 94.9 2.8 9.5E-05 40.1 23.2 118 88-230 180-297 (378)
55 2q7f_A YRRB protein; TPR, prot 94.9 1.3 4.3E-05 38.7 16.3 97 91-223 92-188 (243)
56 3ieg_A DNAJ homolog subfamily 94.8 2.5 8.5E-05 38.9 22.2 168 18-223 127-301 (359)
57 2qfc_A PLCR protein; TPR, HTH, 94.7 0.2 6.7E-06 46.7 11.0 110 90-223 75-184 (293)
58 4eqf_A PEX5-related protein; a 94.7 0.97 3.3E-05 42.7 16.0 97 91-223 214-310 (365)
59 1elw_A TPR1-domain of HOP; HOP 94.6 0.46 1.6E-05 36.1 11.3 99 89-223 3-101 (118)
60 2gw1_A Mitochondrial precursor 94.6 0.9 3.1E-05 44.7 16.0 103 92-224 374-479 (514)
61 3vtx_A MAMA; tetratricopeptide 94.6 1.4 4.8E-05 37.1 15.3 132 10-158 38-169 (184)
62 3hym_B Cell division cycle pro 94.6 2.2 7.4E-05 39.0 17.8 166 11-223 22-188 (330)
63 3ulq_A Response regulator aspa 94.4 3.6 0.00012 39.3 22.2 113 88-224 182-294 (383)
64 2ifu_A Gamma-SNAP; membrane fu 94.4 2.3 7.9E-05 39.7 17.9 147 6-157 71-222 (307)
65 2pl2_A Hypothetical conserved 94.3 2.6 8.8E-05 37.1 18.0 167 9-223 3-180 (217)
66 3cv0_A Peroxisome targeting si 94.3 0.95 3.3E-05 41.4 14.6 98 90-223 172-269 (327)
67 4gco_A Protein STI-1; structur 94.2 1 3.5E-05 36.4 13.0 103 85-223 8-110 (126)
68 1fch_A Peroxisomal targeting s 94.2 3.3 0.00011 38.6 18.5 98 90-223 217-314 (368)
69 3fp2_A TPR repeat-containing p 94.1 0.9 3.1E-05 45.2 15.0 104 91-224 379-492 (537)
70 1a17_A Serine/threonine protei 94.1 0.82 2.8E-05 37.4 12.4 100 88-223 11-110 (166)
71 3sz7_A HSC70 cochaperone (SGT) 93.9 0.84 2.9E-05 38.1 12.2 100 89-224 10-109 (164)
72 2xev_A YBGF; tetratricopeptide 93.8 0.96 3.3E-05 35.5 11.9 101 94-224 6-106 (129)
73 3upv_A Heat shock protein STI1 93.8 1.1 3.7E-05 35.4 12.2 99 89-223 3-101 (126)
74 2y4t_A DNAJ homolog subfamily 93.7 5.2 0.00018 38.5 25.1 172 90-299 177-357 (450)
75 2lni_A Stress-induced-phosphop 93.6 0.68 2.3E-05 36.2 10.6 98 90-223 16-113 (133)
76 3as5_A MAMA; tetratricopeptide 93.6 2.4 8.3E-05 34.7 14.6 134 9-159 40-173 (186)
77 2yhc_A BAMD, UPF0169 lipoprote 93.5 3.2 0.00011 36.6 16.0 65 91-158 148-212 (225)
78 2dba_A Smooth muscle cell asso 93.5 1.1 3.9E-05 35.6 12.0 101 90-223 28-128 (148)
79 2vyi_A SGTA protein; chaperone 93.3 2.1 7.2E-05 32.8 14.9 99 89-223 11-109 (131)
80 3q49_B STIP1 homology and U bo 93.3 1.3 4.4E-05 35.2 11.9 98 90-223 9-106 (137)
81 2e2e_A Formate-dependent nitri 93.1 2.3 7.9E-05 35.6 13.9 99 90-224 44-145 (177)
82 3rkv_A Putative peptidylprolyl 93.1 1.1 3.7E-05 37.3 11.5 105 89-223 10-126 (162)
83 2vq2_A PILW, putative fimbrial 93.0 3.8 0.00013 34.9 19.3 168 11-222 42-210 (225)
84 1na0_A Designed protein CTPR3; 93.0 1.7 5.8E-05 33.1 11.9 98 90-223 9-106 (125)
85 2gw1_A Mitochondrial precursor 92.9 2.9 0.0001 41.0 16.2 168 8-223 234-401 (514)
86 3qky_A Outer membrane assembly 92.7 2.8 9.7E-05 37.6 14.7 149 9-160 50-225 (261)
87 2vgx_A Chaperone SYCD; alterna 92.6 3.4 0.00012 34.1 14.1 99 89-223 20-118 (148)
88 4ga2_A E3 SUMO-protein ligase 92.5 0.91 3.1E-05 37.8 10.3 98 89-222 30-128 (150)
89 2xcb_A PCRH, regulatory protei 92.5 2.5 8.6E-05 34.3 12.9 99 89-223 17-115 (142)
90 2fbn_A 70 kDa peptidylprolyl i 92.5 1.4 4.9E-05 37.9 11.8 105 89-223 37-151 (198)
91 2pl2_A Hypothetical conserved 92.2 1.4 4.8E-05 38.9 11.7 95 90-221 118-212 (217)
92 1fch_A Peroxisomal targeting s 92.2 7.3 0.00025 36.2 20.3 95 12-117 65-159 (368)
93 4i17_A Hypothetical protein; T 92.1 5.6 0.00019 34.6 16.6 101 94-223 46-146 (228)
94 3mv2_B Coatomer subunit epsilo 92.0 0.89 3E-05 43.9 10.6 106 93-224 103-208 (310)
95 2fo7_A Synthetic consensus TPR 91.9 3.3 0.00011 31.6 14.8 129 13-158 3-131 (136)
96 3mkr_A Coatomer subunit epsilo 91.8 8 0.00027 35.9 19.4 166 9-224 63-230 (291)
97 2fo7_A Synthetic consensus TPR 91.8 1.9 6.4E-05 33.1 10.8 95 93-223 4-98 (136)
98 2kck_A TPR repeat; tetratricop 91.8 1.3 4.3E-05 33.3 9.5 97 94-224 10-107 (112)
99 3u4t_A TPR repeat-containing p 91.6 3.9 0.00013 36.3 14.1 98 93-223 6-103 (272)
100 3fp2_A TPR repeat-containing p 91.5 11 0.00039 37.0 23.0 164 12-223 244-407 (537)
101 1ihg_A Cyclophilin 40; ppiase 91.4 2.1 7.3E-05 41.7 13.0 105 89-223 222-336 (370)
102 2yhc_A BAMD, UPF0169 lipoprote 91.2 7.2 0.00025 34.2 19.7 182 11-224 4-214 (225)
103 1wi9_A Protein C20ORF116 homol 90.6 0.41 1.4E-05 35.8 5.1 49 332-380 18-66 (72)
104 4gyw_A UDP-N-acetylglucosamine 90.3 6.4 0.00022 42.2 16.4 165 90-299 9-173 (723)
105 3gyz_A Chaperone protein IPGC; 90.2 5.7 0.00019 33.3 13.0 100 89-224 35-134 (151)
106 1p5q_A FKBP52, FK506-binding p 90.1 3.8 0.00013 39.0 13.2 106 88-223 145-259 (336)
107 1hxi_A PEX5, peroxisome target 90.1 3.4 0.00012 32.8 11.0 94 94-223 21-114 (121)
108 1a17_A Serine/threonine protei 89.9 6.7 0.00023 31.6 13.6 137 8-159 10-146 (166)
109 3cv0_A Peroxisome targeting si 89.8 8.2 0.00028 34.9 14.8 138 11-159 172-315 (327)
110 1elr_A TPR2A-domain of HOP; HO 89.4 5.9 0.0002 30.2 13.5 68 92-159 40-108 (131)
111 4gyw_A UDP-N-acetylglucosamine 89.1 12 0.0004 40.2 17.2 168 8-222 6-173 (723)
112 1xnf_A Lipoprotein NLPI; TPR, 88.9 5.9 0.0002 35.0 12.8 99 89-223 42-140 (275)
113 2c2l_A CHIP, carboxy terminus 88.8 5.2 0.00018 36.9 12.8 97 91-223 5-101 (281)
114 1sfx_A Conserved hypothetical 88.4 5 0.00017 30.9 10.6 68 333-402 32-101 (109)
115 3n71_A Histone lysine methyltr 88.3 3.6 0.00012 42.0 12.0 107 94-222 313-421 (490)
116 1kt0_A FKBP51, 51 kDa FK506-bi 87.7 5.9 0.0002 39.6 13.1 106 88-223 266-380 (457)
117 1p5q_A FKBP52, FK506-binding p 87.5 19 0.00067 33.9 17.4 65 89-159 195-259 (336)
118 1hh8_A P67PHOX, NCF-2, neutrop 87.0 4 0.00014 34.9 10.1 93 92-223 8-100 (213)
119 4b4t_T 26S proteasome regulato 86.8 7.2 0.00025 36.7 12.3 153 195-358 60-223 (274)
120 1qgp_A Protein (double strande 86.2 2.2 7.4E-05 32.1 6.8 38 335-372 31-68 (77)
121 1rz4_A Eukaryotic translation 86.2 5.2 0.00018 36.6 10.6 58 315-379 132-190 (226)
122 3u4t_A TPR repeat-containing p 86.1 17 0.00059 31.9 21.6 169 12-224 4-172 (272)
123 3qou_A Protein YBBN; thioredox 85.8 21 0.00072 32.7 16.3 63 90-158 117-179 (287)
124 1hh8_A P67PHOX, NCF-2, neutrop 85.7 15 0.00053 31.0 14.0 131 15-159 10-150 (213)
125 3sz7_A HSC70 cochaperone (SGT) 85.0 15 0.0005 30.2 13.2 104 5-159 5-108 (164)
126 4abn_A Tetratricopeptide repea 85.0 22 0.00076 35.4 15.8 65 90-159 213-287 (474)
127 1ub9_A Hypothetical protein PH 85.0 4.8 0.00016 30.7 8.6 67 334-402 29-98 (100)
128 4abn_A Tetratricopeptide repea 84.3 35 0.0012 33.9 20.4 98 89-223 101-208 (474)
129 4f3v_A ESX-1 secretion system 84.3 9.6 0.00033 36.0 11.9 102 88-224 100-201 (282)
130 4gcn_A Protein STI-1; structur 83.5 15 0.00051 29.1 13.8 107 7-158 4-111 (127)
131 1xn7_A Hypothetical protein YH 83.5 2 6.8E-05 32.6 5.4 38 328-365 9-46 (78)
132 3ma5_A Tetratricopeptide repea 83.3 5.6 0.00019 30.2 8.3 64 90-159 7-70 (100)
133 3urz_A Uncharacterized protein 83.1 22 0.00074 30.7 13.9 95 93-223 7-117 (208)
134 2dba_A Smooth muscle cell asso 83.0 15 0.00051 28.7 13.3 104 8-159 25-128 (148)
135 2vsy_A XCC0866; transferase, g 82.8 14 0.00048 37.4 13.4 61 92-158 25-85 (568)
136 1w3b_A UDP-N-acetylglucosamine 82.8 31 0.0011 32.3 23.8 95 93-223 104-198 (388)
137 1w3b_A UDP-N-acetylglucosamine 82.3 33 0.0011 32.1 24.3 96 92-223 205-300 (388)
138 3qww_A SET and MYND domain-con 82.2 10 0.00035 38.0 11.8 99 102-222 310-410 (433)
139 2vsy_A XCC0866; transferase, g 82.1 21 0.0007 36.2 14.4 98 91-224 58-158 (568)
140 1xnf_A Lipoprotein NLPI; TPR, 81.8 26 0.00088 30.6 20.4 134 7-158 39-172 (275)
141 1qbj_A Protein (double-strande 81.7 3.1 0.00011 31.7 6.0 38 335-372 27-64 (81)
142 3n71_A Histone lysine methyltr 81.5 9.1 0.00031 39.0 11.3 109 89-222 350-463 (490)
143 1na3_A Designed protein CTPR2; 81.2 9.7 0.00033 27.2 8.7 64 90-159 9-72 (91)
144 2k02_A Ferrous iron transport 81.1 2.5 8.5E-05 32.8 5.2 41 327-367 8-48 (87)
145 3k9i_A BH0479 protein; putativ 80.9 10 0.00036 29.2 9.3 65 89-159 26-90 (117)
146 1hz4_A MALT regulatory protein 80.8 36 0.0012 31.7 21.9 107 91-223 175-282 (373)
147 2kck_A TPR repeat; tetratricop 80.8 6.9 0.00024 28.9 7.9 64 92-159 42-106 (112)
148 2xev_A YBGF; tetratricopeptide 80.5 11 0.00036 29.1 9.2 66 91-159 40-105 (129)
149 2fbh_A Transcriptional regulat 80.0 15 0.00052 29.6 10.4 44 331-374 48-91 (146)
150 4i17_A Hypothetical protein; T 79.8 28 0.00097 29.8 22.3 137 11-159 7-146 (228)
151 4g1t_A Interferon-induced prot 79.6 16 0.00055 35.3 12.1 115 89-223 50-167 (472)
152 3upv_A Heat shock protein STI1 79.2 20 0.00067 27.7 12.8 63 91-159 39-101 (126)
153 2r5s_A Uncharacterized protein 79.1 16 0.00056 30.3 10.6 64 90-157 108-171 (176)
154 2vyi_A SGTA protein; chaperone 79.0 18 0.00062 27.2 13.1 103 6-159 7-109 (131)
155 2r5s_A Uncharacterized protein 78.6 27 0.00093 28.9 12.9 60 93-158 9-68 (176)
156 3qwp_A SET and MYND domain-con 78.5 12 0.0004 37.4 10.7 101 100-223 297-400 (429)
157 1jgs_A Multiple antibiotic res 78.4 14 0.00047 29.7 9.5 64 333-396 46-110 (138)
158 2l6j_A TPR repeat-containing p 78.4 11 0.00037 28.1 8.4 64 90-159 4-67 (111)
159 3q49_B STIP1 homology and U bo 77.9 22 0.00075 27.5 11.3 101 9-160 7-107 (137)
160 4b4t_P 26S proteasome regulato 77.8 32 0.0011 34.4 13.8 70 128-221 135-204 (445)
161 1s3j_A YUSO protein; structura 77.0 13 0.00045 30.5 9.2 42 333-374 49-90 (155)
162 2gxg_A 146AA long hypothetical 77.0 17 0.00058 29.4 9.8 42 333-374 48-89 (146)
163 2kat_A Uncharacterized protein 76.9 13 0.00044 28.4 8.6 64 90-159 19-82 (115)
164 2nnn_A Probable transcriptiona 76.6 15 0.0005 29.5 9.2 41 334-374 51-91 (140)
165 2fbi_A Probable transcriptiona 76.3 14 0.00048 29.7 9.0 43 333-375 48-90 (142)
166 3k9i_A BH0479 protein; putativ 76.2 8.2 0.00028 29.9 7.2 89 102-223 2-90 (117)
167 3bpv_A Transcriptional regulat 76.2 13 0.00045 29.8 8.7 43 333-375 41-83 (138)
168 3txn_A 26S proteasome regulato 76.1 43 0.0015 33.1 13.9 109 91-224 20-169 (394)
169 1na3_A Designed protein CTPR2; 76.1 9.2 0.00031 27.3 7.1 70 124-223 3-72 (91)
170 1z7u_A Hypothetical protein EF 75.8 14 0.00049 29.2 8.6 41 334-374 34-75 (112)
171 3eco_A MEPR; mutlidrug efflux 75.6 17 0.00059 29.2 9.4 41 334-374 46-86 (139)
172 1lj9_A Transcriptional regulat 75.5 19 0.00065 29.1 9.6 41 334-374 42-82 (144)
173 2if4_A ATFKBP42; FKBP-like, al 75.5 6.4 0.00022 37.5 7.6 105 89-223 178-293 (338)
174 1r7j_A Conserved hypothetical 75.3 20 0.00069 27.7 9.1 33 336-368 21-53 (95)
175 3r0a_A Putative transcriptiona 75.2 27 0.00092 28.1 10.3 35 336-370 43-77 (123)
176 1kt0_A FKBP51, 51 kDa FK506-bi 75.0 67 0.0023 31.6 17.5 66 88-159 315-380 (457)
177 2heo_A Z-DNA binding protein 1 74.7 8.9 0.00031 27.7 6.5 34 334-367 24-57 (67)
178 3bj6_A Transcriptional regulat 74.6 15 0.00053 30.0 8.9 42 333-374 52-93 (152)
179 3oop_A LIN2960 protein; protei 74.6 13 0.00044 30.2 8.3 46 334-379 50-98 (143)
180 2hr3_A Probable transcriptiona 74.3 13 0.00044 30.2 8.3 42 333-374 48-89 (147)
181 2rdp_A Putative transcriptiona 74.3 18 0.00062 29.4 9.3 42 333-374 54-95 (150)
182 3s2w_A Transcriptional regulat 74.1 15 0.0005 30.6 8.7 42 333-374 62-103 (159)
183 2frh_A SARA, staphylococcal ac 73.6 11 0.00039 30.3 7.6 67 334-402 52-121 (127)
184 2oqg_A Possible transcriptiona 73.4 25 0.00086 27.3 9.6 36 335-370 34-69 (114)
185 1ku9_A Hypothetical protein MJ 73.3 14 0.00046 30.0 8.2 41 334-374 40-80 (152)
186 2a61_A Transcriptional regulat 72.9 20 0.00067 29.0 9.1 42 333-374 45-86 (145)
187 2kc7_A BFR218_protein; tetratr 72.5 16 0.00054 26.8 7.8 60 94-159 4-64 (99)
188 3g3z_A NMB1585, transcriptiona 72.4 13 0.00043 30.4 7.8 41 334-374 44-84 (145)
189 3tgn_A ADC operon repressor AD 72.3 20 0.00069 29.0 9.0 42 332-374 49-90 (146)
190 2lni_A Stress-induced-phosphop 71.9 30 0.001 26.2 13.8 102 5-117 10-111 (133)
191 3bja_A Transcriptional regulat 71.9 15 0.0005 29.5 8.0 42 333-374 45-86 (139)
192 2nyx_A Probable transcriptiona 71.5 22 0.00076 29.9 9.4 42 333-374 57-98 (168)
193 3k0l_A Repressor protein; heli 71.3 18 0.0006 30.2 8.6 42 333-374 58-99 (162)
194 1elw_A TPR1-domain of HOP; HOP 71.0 28 0.00096 25.5 12.7 62 92-159 40-101 (118)
195 2jt1_A PEFI protein; solution 70.8 9.4 0.00032 28.7 5.9 33 335-367 24-56 (77)
196 4g1t_A Interferon-induced prot 70.8 71 0.0024 30.6 14.1 123 93-224 337-460 (472)
197 2xcb_A PCRH, regulatory protei 70.3 26 0.00089 27.9 9.2 66 128-223 16-81 (142)
198 1tbx_A ORF F-93, hypothetical 70.3 32 0.0011 26.1 9.2 69 333-403 20-92 (99)
199 1ouv_A Conserved hypothetical 70.2 35 0.0012 30.2 11.0 94 90-223 6-107 (273)
200 3nqo_A MARR-family transcripti 70.1 21 0.00073 30.8 9.1 43 332-374 54-96 (189)
201 1hz4_A MALT regulatory protein 70.1 69 0.0024 29.7 22.1 110 90-223 135-244 (373)
202 2eth_A Transcriptional regulat 70.0 28 0.00094 28.6 9.5 41 334-374 57-97 (154)
203 2d1h_A ST1889, 109AA long hypo 69.8 34 0.0012 25.9 9.8 41 333-373 34-74 (109)
204 3qou_A Protein YBBN; thioredox 69.4 32 0.0011 31.4 10.7 64 90-157 219-282 (287)
205 2ia0_A Putative HTH-type trans 69.2 23 0.00077 30.5 8.9 40 333-372 29-71 (171)
206 3f6o_A Probable transcriptiona 69.2 37 0.0013 26.9 9.7 77 334-412 30-107 (118)
207 3qww_A SET and MYND domain-con 69.1 14 0.00049 36.8 8.7 71 89-160 339-412 (433)
208 2htj_A P fimbrial regulatory p 69.0 16 0.00055 27.0 7.0 34 334-367 13-46 (81)
209 3urz_A Uncharacterized protein 69.0 43 0.0015 28.7 10.9 64 90-159 54-117 (208)
210 3qwp_A SET and MYND domain-con 68.7 15 0.00051 36.6 8.7 71 89-160 328-401 (429)
211 1wao_1 Serine/threonine protei 68.5 8.6 0.00029 38.7 6.9 56 96-157 12-67 (477)
212 3ech_A MEXR, multidrug resista 68.5 10 0.00034 30.9 6.2 42 333-374 49-90 (142)
213 3bdd_A Regulatory protein MARR 68.4 12 0.00042 30.1 6.7 42 333-374 43-84 (142)
214 3bro_A Transcriptional regulat 68.1 24 0.00083 28.2 8.6 40 335-374 50-89 (141)
215 3cjn_A Transcriptional regulat 68.0 29 0.001 28.6 9.3 42 333-374 64-105 (162)
216 2vgx_A Chaperone SYCD; alterna 68.0 33 0.0011 27.9 9.5 66 128-223 19-84 (148)
217 3deu_A Transcriptional regulat 67.6 23 0.00078 29.9 8.6 47 333-379 66-115 (166)
218 2v5f_A Prolyl 4-hydroxylase su 67.0 29 0.00099 26.5 8.4 68 91-159 6-75 (104)
219 3f3x_A Transcriptional regulat 66.4 33 0.0011 27.7 9.1 38 337-374 52-89 (144)
220 2y75_A HTH-type transcriptiona 66.1 14 0.00048 29.9 6.6 52 325-376 14-67 (129)
221 3e6m_A MARR family transcripti 66.0 21 0.00073 29.6 8.0 46 334-379 66-114 (161)
222 3cdh_A Transcriptional regulat 65.9 20 0.00069 29.4 7.7 42 333-374 55-96 (155)
223 4gco_A Protein STI-1; structur 65.5 48 0.0016 26.0 12.0 100 8-159 10-110 (126)
224 2pzi_A Probable serine/threoni 65.4 34 0.0012 35.9 11.1 158 101-299 402-562 (681)
225 3jth_A Transcription activator 65.4 33 0.0011 26.0 8.4 37 334-370 35-71 (98)
226 2hzt_A Putative HTH-type trans 65.1 38 0.0013 26.4 8.8 42 333-374 25-67 (107)
227 3i5p_A Nucleoporin NUP170; hel 64.2 32 0.0011 35.4 10.1 48 195-243 218-265 (525)
228 3rkv_A Putative peptidylprolyl 63.6 57 0.0019 26.3 14.2 121 6-159 6-126 (162)
229 2qww_A Transcriptional regulat 62.9 18 0.0006 29.7 6.8 47 333-379 53-104 (154)
230 3nrv_A Putative transcriptiona 62.9 19 0.00066 29.3 7.0 42 333-374 52-93 (148)
231 2fa5_A Transcriptional regulat 62.2 21 0.00073 29.5 7.3 42 333-374 61-102 (162)
232 2cg4_A Regulatory protein ASNC 61.6 19 0.00065 30.0 6.8 40 333-372 20-62 (152)
233 2cfx_A HTH-type transcriptiona 61.1 19 0.00064 29.8 6.6 41 332-372 16-59 (144)
234 1na0_A Designed protein CTPR3; 60.8 47 0.0016 24.4 11.5 99 9-159 7-106 (125)
235 3ma5_A Tetratricopeptide repea 60.5 36 0.0012 25.4 7.7 63 131-223 8-70 (100)
236 1xd7_A YWNA; structural genomi 59.8 15 0.00051 30.7 5.7 51 324-376 13-63 (145)
237 3cuo_A Uncharacterized HTH-typ 59.8 52 0.0018 24.5 9.1 38 334-371 37-74 (99)
238 3hsr_A HTH-type transcriptiona 58.4 30 0.001 28.0 7.3 42 333-374 48-89 (140)
239 4aik_A Transcriptional regulat 58.2 74 0.0025 26.2 10.0 46 329-374 40-85 (151)
240 2dbb_A Putative HTH-type trans 58.1 19 0.00064 29.9 6.1 40 333-372 21-63 (151)
241 3t8r_A Staphylococcus aureus C 57.7 23 0.00077 29.6 6.5 53 324-376 15-69 (143)
242 2bv6_A MGRA, HTH-type transcri 57.6 24 0.00083 28.4 6.6 42 333-374 49-90 (142)
243 3l7w_A Putative uncharacterize 56.9 30 0.001 27.2 6.8 65 341-405 32-98 (108)
244 1ouv_A Conserved hypothetical 56.4 1E+02 0.0035 27.0 18.6 160 10-223 5-179 (273)
245 4hbl_A Transcriptional regulat 56.1 35 0.0012 27.9 7.4 42 333-374 53-94 (149)
246 3fm5_A Transcriptional regulat 56.0 25 0.00086 28.7 6.5 41 334-374 53-93 (150)
247 2pzi_A Probable serine/threoni 56.0 54 0.0019 34.3 10.6 63 91-159 434-496 (681)
248 2v79_A DNA replication protein 55.7 19 0.00064 30.0 5.6 43 333-375 49-93 (135)
249 2p5v_A Transcriptional regulat 55.6 24 0.00081 29.7 6.4 40 333-372 22-64 (162)
250 4g26_A Pentatricopeptide repea 54.4 1.8E+02 0.0062 29.2 16.7 170 13-223 28-204 (501)
251 1xi4_A Clathrin heavy chain; a 54.3 3.2E+02 0.011 32.0 19.3 51 94-158 1199-1249(1630)
252 3boq_A Transcriptional regulat 54.2 18 0.00062 29.9 5.4 44 331-374 58-101 (160)
253 3lwf_A LIN1550 protein, putati 54.0 61 0.0021 27.6 8.7 54 324-377 31-86 (159)
254 2hr2_A Hypothetical protein; a 53.4 1E+02 0.0036 26.1 14.0 117 87-223 8-131 (159)
255 1ucr_A Protein DSVD; dissimila 53.3 17 0.00056 27.4 4.2 37 329-365 15-52 (78)
256 3u2r_A Regulatory protein MARR 53.2 39 0.0013 28.2 7.4 41 334-374 61-101 (168)
257 2kko_A Possible transcriptiona 52.8 54 0.0019 25.5 7.7 37 334-370 37-73 (108)
258 2qvo_A Uncharacterized protein 52.3 47 0.0016 25.1 7.1 45 335-379 30-74 (95)
259 2w25_A Probable transcriptiona 52.1 31 0.0011 28.5 6.5 40 333-372 19-61 (150)
260 1hxi_A PEX5, peroxisome target 52.0 51 0.0017 25.6 7.5 63 90-158 51-113 (121)
261 3i4p_A Transcriptional regulat 51.2 56 0.0019 27.5 8.1 42 331-372 13-57 (162)
262 2kc7_A BFR218_protein; tetratr 50.7 38 0.0013 24.5 6.3 61 134-223 4-64 (99)
263 1q1h_A TFE, transcription fact 49.8 28 0.00096 27.1 5.6 35 334-368 32-66 (110)
264 2k9l_A RNA polymerase sigma fa 49.6 15 0.00052 27.3 3.7 27 333-359 46-72 (76)
265 3kp7_A Transcriptional regulat 49.6 25 0.00086 28.7 5.5 43 332-374 48-92 (151)
266 1wao_1 Serine/threonine protei 49.3 42 0.0014 33.5 8.1 95 90-218 40-134 (477)
267 2ond_A Cleavage stimulation fa 48.8 1.5E+02 0.0052 26.8 11.4 99 90-223 99-198 (308)
268 1b89_A Protein (clathrin heavy 48.7 46 0.0016 33.5 8.1 97 80-223 140-236 (449)
269 3df8_A Possible HXLR family tr 48.5 42 0.0014 26.5 6.4 36 335-370 42-78 (111)
270 2e1c_A Putative HTH-type trans 48.4 24 0.00083 30.3 5.3 40 333-372 39-81 (171)
271 3tqn_A Transcriptional regulat 48.2 46 0.0016 26.3 6.6 45 331-377 28-73 (113)
272 2pex_A Transcriptional regulat 48.2 38 0.0013 27.6 6.4 42 333-374 59-100 (153)
273 2cyy_A Putative HTH-type trans 47.0 26 0.00087 29.1 5.1 39 333-371 19-60 (151)
274 1oyi_A Double-stranded RNA-bin 46.9 17 0.00059 27.7 3.5 32 336-367 31-62 (82)
275 2pi2_A Replication protein A 3 46.7 4.1 0.00014 38.2 0.0 38 334-371 223-261 (270)
276 1i1g_A Transcriptional regulat 45.0 29 0.00099 28.2 5.1 34 333-366 16-49 (141)
277 2kat_A Uncharacterized protein 44.1 70 0.0024 23.9 7.1 63 131-223 20-82 (115)
278 3ffl_A Anaphase-promoting comp 43.5 66 0.0023 27.8 7.2 72 130-222 20-91 (167)
279 1ldd_A APC2WHB, anaphase promo 42.9 53 0.0018 24.5 5.6 20 348-367 46-65 (74)
280 2c2l_A CHIP, carboxy terminus 42.7 1.4E+02 0.0049 26.8 10.1 95 11-116 4-98 (281)
281 2pg4_A Uncharacterized protein 42.7 37 0.0013 25.6 5.1 45 335-379 30-76 (95)
282 2h6f_A Protein farnesyltransfe 42.4 2.4E+02 0.0081 27.0 12.9 99 89-223 96-195 (382)
283 3gyz_A Chaperone protein IPGC; 42.3 1.4E+02 0.0048 24.4 13.0 26 10-35 35-60 (151)
284 3jw4_A Transcriptional regulat 42.2 21 0.00071 29.2 3.8 41 334-374 56-96 (148)
285 1pc2_A Mitochondria fission pr 42.0 1.2E+02 0.0041 25.6 8.6 66 90-159 32-100 (152)
286 3neu_A LIN1836 protein; struct 41.7 56 0.0019 26.3 6.3 46 331-378 32-78 (125)
287 2gau_A Transcriptional regulat 41.6 66 0.0023 27.9 7.3 51 334-392 179-229 (232)
288 1z91_A Organic hydroperoxide r 40.9 39 0.0014 27.2 5.3 41 334-374 53-93 (147)
289 3dv8_A Transcriptional regulat 40.7 47 0.0016 28.6 6.1 42 335-380 169-210 (220)
290 2pn6_A ST1022, 150AA long hypo 40.4 40 0.0014 27.7 5.3 40 333-372 15-57 (150)
291 2ond_A Cleavage stimulation fa 40.3 2.1E+02 0.0071 25.8 14.5 69 90-160 203-271 (308)
292 1xi4_A Clathrin heavy chain; a 40.2 3.6E+02 0.012 31.5 14.3 72 87-158 1352-1444(1630)
293 1ylf_A RRF2 family protein; st 39.9 60 0.002 27.0 6.4 37 334-370 29-65 (149)
294 3mv2_B Coatomer subunit epsilo 39.7 2.5E+02 0.0085 26.5 13.1 139 89-262 135-281 (310)
295 3rjv_A Putative SEL1 repeat pr 39.1 96 0.0033 26.5 7.9 92 90-222 18-117 (212)
296 3k69_A Putative transcription 38.9 39 0.0013 28.8 5.1 53 324-376 16-69 (162)
297 3lpz_A GET4 (YOR164C homolog); 38.7 2.7E+02 0.0093 26.7 18.8 141 12-153 36-210 (336)
298 2v5f_A Prolyl 4-hydroxylase su 38.3 86 0.0029 23.7 6.7 70 131-223 6-75 (104)
299 4a5n_A Uncharacterized HTH-typ 38.2 1.5E+02 0.0051 24.2 8.4 62 333-394 37-106 (131)
300 3by6_A Predicted transcription 38.2 64 0.0022 26.0 6.1 46 331-378 30-76 (126)
301 3dkw_A DNR protein; CRP-FNR, H 37.0 87 0.003 26.9 7.3 33 334-366 177-209 (227)
302 3e6c_C CPRK, cyclic nucleotide 36.2 20 0.00069 32.0 2.9 66 334-403 176-248 (250)
303 2zcw_A TTHA1359, transcription 36.1 61 0.0021 27.5 6.1 43 334-380 145-187 (202)
304 2if4_A ATFKBP42; FKBP-like, al 36.1 98 0.0034 29.0 8.0 63 91-159 231-293 (338)
305 4b8x_A SCO5413, possible MARR- 36.0 83 0.0028 25.7 6.6 42 333-374 49-90 (147)
306 1y0u_A Arsenical resistance op 35.6 95 0.0032 23.3 6.4 35 334-368 42-76 (96)
307 3d0s_A Transcriptional regulat 35.3 72 0.0024 27.6 6.5 42 335-380 177-218 (227)
308 2qlz_A Transcription factor PF 35.0 41 0.0014 30.6 4.8 46 332-380 175-220 (232)
309 1r1u_A CZRA, repressor protein 34.9 1.2E+02 0.0041 23.2 7.1 44 334-379 38-81 (106)
310 3b02_A Transcriptional regulat 34.9 74 0.0025 26.9 6.4 42 335-380 139-180 (195)
311 1r1t_A Transcriptional repress 34.7 1.7E+02 0.0058 23.2 8.3 37 334-370 58-94 (122)
312 2l6j_A TPR repeat-containing p 34.5 1.3E+02 0.0044 21.7 10.2 65 130-224 4-68 (111)
313 3mkq_A Coatomer beta'-subunit; 34.3 2.2E+02 0.0077 29.3 11.2 90 100-222 662-751 (814)
314 1z6r_A MLC protein; transcript 34.2 56 0.0019 31.7 6.1 46 322-367 14-62 (406)
315 4ham_A LMO2241 protein; struct 33.9 1.8E+02 0.0063 23.3 9.1 57 315-377 21-78 (134)
316 1z05_A Transcriptional regulat 33.3 63 0.0022 31.7 6.3 46 322-367 37-85 (429)
317 1u2w_A CADC repressor, cadmium 33.3 1.8E+02 0.0061 22.9 8.7 35 334-368 55-89 (122)
318 2oz6_A Virulence factor regula 33.2 40 0.0014 28.7 4.3 32 335-366 164-195 (207)
319 2fxa_A Protease production reg 32.9 72 0.0025 27.9 6.0 41 334-374 61-101 (207)
320 4b4t_O 26S proteasome regulato 32.7 2.5E+02 0.0085 27.2 10.5 64 91-154 128-193 (393)
321 1uly_A Hypothetical protein PH 32.6 1E+02 0.0034 26.9 6.9 35 334-368 32-66 (192)
322 2p7v_B Sigma-70, RNA polymeras 32.6 80 0.0027 22.0 5.2 29 333-361 23-51 (68)
323 2f2e_A PA1607; transcription f 32.4 98 0.0034 25.5 6.5 42 333-374 35-76 (146)
324 2hoe_A N-acetylglucosamine kin 32.2 41 0.0014 32.5 4.6 48 319-367 15-65 (380)
325 2ek5_A Predicted transcription 32.2 94 0.0032 25.2 6.2 45 331-377 23-68 (129)
326 2fsw_A PG_0823 protein; alpha- 32.0 91 0.0031 24.0 5.9 42 333-374 36-78 (107)
327 2x4h_A Hypothetical protein SS 31.8 75 0.0026 25.4 5.6 36 332-367 28-63 (139)
328 3fx3_A Cyclic nucleotide-bindi 31.7 78 0.0027 27.6 6.1 41 335-380 178-218 (237)
329 1ihg_A Cyclophilin 40; ppiase 31.2 3.4E+02 0.012 25.6 14.3 29 10-38 222-250 (370)
330 4b0z_A RPN12, 26S proteasome r 31.0 2.8E+02 0.0095 24.7 9.8 94 96-213 14-116 (229)
331 4ev0_A Transcription regulator 31.0 45 0.0015 28.6 4.3 44 333-380 161-204 (216)
332 3e97_A Transcriptional regulat 30.9 47 0.0016 28.9 4.5 34 333-366 173-206 (231)
333 2jpc_A SSRB; DNA binding prote 30.8 73 0.0025 21.5 4.6 30 332-361 10-39 (61)
334 2ooe_A Cleavage stimulation fa 30.7 2.3E+02 0.0078 27.9 10.1 101 90-224 321-421 (530)
335 3ryp_A Catabolite gene activat 30.6 47 0.0016 28.3 4.4 32 335-366 167-198 (210)
336 2v9v_A Selenocysteine-specific 30.4 2E+02 0.007 22.7 8.4 60 336-401 18-77 (135)
337 2k9m_A RNA polymerase sigma fa 30.4 43 0.0015 27.6 3.8 27 333-359 37-63 (130)
338 2vn2_A DNAD, chromosome replic 30.2 40 0.0014 27.4 3.6 35 336-370 52-86 (128)
339 1yyv_A Putative transcriptiona 29.5 2.2E+02 0.0075 22.9 8.3 42 333-374 46-88 (131)
340 3iwz_A CAP-like, catabolite ac 29.3 51 0.0017 28.6 4.4 32 335-366 187-218 (230)
341 1xmk_A Double-stranded RNA-spe 29.1 49 0.0017 24.8 3.6 33 334-366 24-57 (79)
342 2fu4_A Ferric uptake regulatio 29.1 1.3E+02 0.0043 21.8 6.0 45 334-379 32-81 (83)
343 4fhn_B Nucleoporin NUP120; pro 28.8 2.4E+02 0.0082 31.5 10.7 118 93-242 845-979 (1139)
344 1ku3_A Sigma factor SIGA; heli 28.6 77 0.0026 22.5 4.6 27 334-360 29-55 (73)
345 3la7_A Global nitrogen regulat 28.3 54 0.0019 29.0 4.5 33 334-366 192-224 (243)
346 2fmy_A COOA, carbon monoxide o 28.3 55 0.0019 28.3 4.4 32 334-365 166-197 (220)
347 3pqk_A Biofilm growth-associat 27.7 1.9E+02 0.0066 21.6 9.5 39 334-372 35-73 (102)
348 1x3u_A Transcriptional regulat 27.6 1.6E+02 0.0055 20.8 6.3 30 332-361 28-57 (79)
349 1okr_A MECI, methicillin resis 27.6 2.1E+02 0.0072 22.0 8.5 38 333-370 22-63 (123)
350 2ff4_A Probable regulatory pro 27.5 2.4E+02 0.0081 27.2 9.3 70 85-160 166-235 (388)
351 2vkj_A TM1634; membrane protei 27.4 1.8E+02 0.0061 22.5 6.4 50 89-139 52-101 (106)
352 2b0l_A GTP-sensing transcripti 27.1 80 0.0027 24.6 4.7 47 331-377 38-85 (102)
353 2e2e_A Formate-dependent nitri 26.6 2.5E+02 0.0084 22.4 13.2 98 10-117 43-142 (177)
354 1ft9_A Carbon monoxide oxidati 26.5 53 0.0018 28.5 4.0 32 335-366 163-194 (222)
355 2o8x_A Probable RNA polymerase 26.5 89 0.003 21.5 4.5 29 332-360 28-56 (70)
356 2ion_A PDCD4, programmed cell 26.2 2.9E+02 0.0098 23.1 10.8 121 190-343 6-127 (152)
357 3iuo_A ATP-dependent DNA helic 26.1 64 0.0022 26.1 4.0 33 332-364 29-61 (122)
358 2bgc_A PRFA; bacterial infecti 26.0 1E+02 0.0036 26.9 5.9 51 335-393 169-220 (238)
359 1nd9_A Translation initiation 26.0 49 0.0017 21.6 2.8 25 335-359 2-26 (49)
360 1zyb_A Transcription regulator 25.6 56 0.0019 28.6 4.0 33 334-366 185-217 (232)
361 1eij_A Hypothetical protein MT 25.6 51 0.0017 24.9 3.0 32 339-370 23-57 (80)
362 2lnb_A Z-DNA-binding protein 1 25.4 1.7E+02 0.006 21.9 5.9 41 326-366 25-65 (80)
363 1t6s_A Conserved hypothetical 25.3 82 0.0028 27.0 4.7 67 319-389 9-81 (162)
364 2fbk_A Transcriptional regulat 25.2 54 0.0018 27.7 3.7 40 335-374 86-125 (181)
365 1sfu_A 34L protein; protein/Z- 25.2 1.3E+02 0.0045 22.3 5.2 34 335-368 29-62 (75)
366 1tty_A Sigma-A, RNA polymerase 25.1 92 0.0031 23.1 4.6 28 334-361 37-64 (87)
367 2xm6_A Protein corresponding t 24.9 4.7E+02 0.016 25.1 11.7 17 207-223 164-180 (490)
368 2wpv_A GET4, UPF0363 protein Y 24.9 4.4E+02 0.015 24.8 17.6 142 12-154 34-212 (312)
369 1ngr_A P75 low affinity neurot 24.9 54 0.0019 24.8 3.2 49 337-407 23-75 (85)
370 2nsz_A Programmed cell death p 24.7 2.7E+02 0.0094 22.4 10.8 32 190-222 4-35 (129)
371 3mzy_A RNA polymerase sigma-H 24.5 2E+02 0.0067 23.0 7.1 30 331-360 120-149 (164)
372 1tc3_C Protein (TC3 transposas 24.4 75 0.0026 19.8 3.5 27 333-359 19-45 (51)
373 2z99_A Putative uncharacterize 24.3 79 0.0027 28.5 4.6 61 319-383 17-81 (219)
374 1je8_A Nitrate/nitrite respons 23.8 1.3E+02 0.0045 21.9 5.2 30 332-361 33-62 (82)
375 1v4r_A Transcriptional repress 23.8 37 0.0013 26.1 2.1 44 332-377 31-75 (102)
376 3kcc_A Catabolite gene activat 23.8 71 0.0024 28.6 4.4 32 335-366 217-248 (260)
377 3hug_A RNA polymerase sigma fa 23.5 1E+02 0.0035 22.9 4.7 30 331-360 49-78 (92)
378 1fse_A GERE; helix-turn-helix 23.5 1.3E+02 0.0044 20.9 5.0 29 332-360 23-51 (74)
379 4f3v_A ESX-1 secretion system 23.4 2.7E+02 0.0093 25.8 8.5 136 10-158 101-236 (282)
380 2ooe_A Cleavage stimulation fa 22.4 5.4E+02 0.019 25.0 13.0 69 90-160 425-493 (530)
381 1on2_A Transcriptional regulat 22.2 2.9E+02 0.01 21.8 10.4 44 333-379 20-63 (142)
382 2wm9_A Dedicator of cytokinesi 22.1 77 0.0026 31.5 4.5 32 187-218 4-35 (428)
383 2p5k_A Arginine repressor; DNA 21.9 1.9E+02 0.0064 19.5 6.7 41 334-379 18-63 (64)
384 3ri2_A Transcriptional regulat 21.3 3.2E+02 0.011 21.8 11.2 64 345-408 48-113 (123)
385 3f6v_A Possible transcriptiona 21.1 2.6E+02 0.0088 23.1 7.1 37 334-370 70-106 (151)
386 3t72_q RNA polymerase sigma fa 21.1 1.4E+02 0.0047 23.1 5.0 28 334-361 38-65 (99)
387 4b4t_R RPN7, 26S proteasome re 21.0 5.8E+02 0.02 24.7 14.5 128 13-147 133-264 (429)
388 2lkp_A Transcriptional regulat 20.8 2.9E+02 0.0099 21.2 8.8 35 334-368 44-78 (119)
389 3ez9_A Para; DNA binding, wing 20.8 91 0.0031 30.2 4.8 55 314-368 21-76 (403)
390 3f8m_A GNTR-family protein tra 20.7 2.7E+02 0.0092 25.0 7.7 45 330-377 30-75 (248)
391 1b89_A Protein (clathrin heavy 20.6 1.5E+02 0.0052 29.7 6.3 92 13-115 124-232 (449)
392 2k9s_A Arabinose operon regula 20.4 1.7E+02 0.0058 22.2 5.5 25 334-358 19-43 (107)
393 3lsg_A Two-component response 20.3 1.7E+02 0.0059 21.9 5.4 25 335-359 19-43 (103)
394 2xm6_A Protein corresponding t 20.2 5.8E+02 0.02 24.5 15.3 60 91-158 112-179 (490)
395 2zkz_A Transcriptional repress 20.2 1.8E+02 0.0062 21.9 5.5 45 334-381 40-84 (99)
396 2jsc_A Transcriptional regulat 20.1 2.3E+02 0.008 22.0 6.3 36 335-370 34-69 (118)
397 4gns_B Protein CSD3, chitin bi 20.0 4.5E+02 0.015 28.1 10.2 31 129-159 336-366 (754)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-90 Score=711.86 Aligned_cols=398 Identities=40% Similarity=0.676 Sum_probs=339.1
Q ss_pred CccCCChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCC--HHHHHHHHHHHHhh
Q 014576 1 MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPD--LDTRIELIKTLNSV 78 (422)
Q Consensus 1 ~R~~~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~--~~~~~~li~tL~~~ 78 (422)
||+++|++||+|++.+|+++|++.++|+.|++++..|+|+|||+|+++++||+.+++|+++.|+ .++++.+++||+.+
T Consensus 46 ~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~v 125 (445)
T 4b4t_P 46 TRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 125 (445)
T ss_dssp HSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSS
T ss_pred hhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999998885 56889999999999
Q ss_pred hcCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 79 SAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 79 ~~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
|+||||||+||+|++.+||++|+++|+|.+|+++|++|++||+++|++.+|++++|+|+|||++.+||++|+++++||++
T Consensus 126 te~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 126 TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHH
Q 014576 159 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLR 238 (422)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~ 238 (422)
+.+..++ .++++++||.++++++.|+++|++||++|+++++++.+.+|+.++..+|+
T Consensus 206 ~~~~~~~-----------------------~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 206 KTFKNPK-----------------------YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLS 262 (445)
T ss_dssp HHHHSSC-----------------------CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhcccCC-----------------------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 8776432 35899999999999999999999999999999999999889888999999
Q ss_pred HHHHHHHhCCCChhhhHHhhhhhcccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHH
Q 014576 239 KICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLR 318 (422)
Q Consensus 239 ~~v~~~ILa~~~~~rs~ll~~~~~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~ 318 (422)
++|+|+||+|++|++++++++++.|++++++|.|+.|+++|.+++|++|+.+...|+..+.++..++.++.+..||+.|+
T Consensus 263 ~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~ 342 (445)
T 4b4t_P 263 HIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQ 342 (445)
T ss_dssp HHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899888875554555566788999999
Q ss_pred HHHHHHHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHHHHHHH
Q 014576 319 QRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 398 (422)
Q Consensus 319 ~~viEhNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~~I~~l 398 (422)
++++||||+++++||++|+|++||++||+|++++|..+++||.+|+|+|+||||+|+|+|++++++++.|++|+.+|++|
T Consensus 343 ~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l 422 (445)
T 4b4t_P 343 KRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDEL 422 (445)
T ss_dssp HHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC--------------------
T ss_pred HHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHhhhhccc
Q 014576 399 LDLVEKSCHQIHKETMVHKTALK 421 (422)
Q Consensus 399 ~~~v~k~~~lI~ke~~~~~~~~~ 421 (422)
|+.|++++|+|+||+|||++++|
T Consensus 423 ~~~v~k~~~lI~kE~m~~~~~~k 445 (445)
T 4b4t_P 423 LEHIETIGHLITKEEIMHGLQAK 445 (445)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999875
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.8e-42 Score=349.89 Aligned_cols=361 Identities=14% Similarity=0.141 Sum_probs=284.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHhhhcCCCCH-HHHHHHHH-HHH-hhhcCcchHHH
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQL-KQAVTAMVQQAMQYIDQTPDL-DTRIELIK-TLN-SVSAGKIYVEI 87 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~ql-k~ai~~~v~~~~~~l~~~~~~-~~~~~li~-tL~-~~~~~ki~~E~ 87 (422)
.++..+++++.+.|+++++.+.+..+....+++ |+.++|+|+.+++.+..+|+. +.+..++. .+. ...++++|+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl-- 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL-- 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 466788999999999999999999999999999 999999999999999999974 66666666 333 356789999
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
|.++..+||++|.+.|+|.+|.+++..+.-|+...-++...+|+++.++++|.+.+|+.+++.++.++.... +..
T Consensus 98 -r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-~ai--- 172 (394)
T 3txn_A 98 -RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-NAI--- 172 (394)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHS---
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-ccC---
Confidence 999999999999999999999999999999986655567999999999999999999999999999987643 111
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHh
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYS-HNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVL 246 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~-~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~IL 246 (422)
+ | .+....++..+.+.+|. ++++|.+|+++|++++.++...+++ .+..+++|+++|.++
T Consensus 173 -----------~-----~---~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~-~~~~~lkYlvL~aLl 232 (394)
T 3txn_A 173 -----------Y-----C---PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSV-KALTSLKYMLLCKIM 232 (394)
T ss_dssp -----------C-----C---CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHHHHH
T ss_pred -----------C-----C---CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccH-HHHHHHHHHHHHHHH
Confidence 1 0 12456678889999999 9999999999999999887755555 678899999999999
Q ss_pred CCCChhhhHHhhhhh-cccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHHHHH
Q 014576 247 APHDPMQSSLLNSTL-EDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHN 325 (422)
Q Consensus 247 a~~~~~rs~ll~~~~-~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~~~viEhN 325 (422)
+..-++...++.... .-...++++.|..|..+|.+.++..|..+...|.+. +..|++...|+..|+++|++||
T Consensus 233 ~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~------l~~D~~l~~h~~~L~~~Ir~~~ 306 (394)
T 3txn_A 233 LGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKE------LAEDVIVQAHLGTLYDTMLEQN 306 (394)
T ss_dssp TTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTT------TTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------HhcChHHHHHHHHHHHHHHHHH
Confidence 976444444333111 001234578889999999999997666654544443 4478888999999999999999
Q ss_pred HHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCC-------hHHHHHHHHHHHHHH
Q 014576 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD-------SNDILNSWAMNLEKL 398 (422)
Q Consensus 326 i~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~-------~~~~l~~W~~~I~~l 398 (422)
++.+++||++|+|++||+.||+|++++|..|++||.+|+|+|+|||++|+|+|.++++ ..+.+++|+..|+.|
T Consensus 307 L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L 386 (394)
T 3txn_A 307 LCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTL 386 (394)
T ss_dssp HHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC------------------------
T ss_pred HHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987643 346899999999999
Q ss_pred HHHHHHH
Q 014576 399 LDLVEKS 405 (422)
Q Consensus 399 ~~~v~k~ 405 (422)
++...++
T Consensus 387 ~~~~~~~ 393 (394)
T 3txn_A 387 YQKAKKL 393 (394)
T ss_dssp -------
T ss_pred HHHHhcc
Confidence 9876653
No 3
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-42 Score=355.94 Aligned_cols=368 Identities=13% Similarity=0.096 Sum_probs=258.8
Q ss_pred ChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhc----CCCC-HHHHHHHHHHHHhhhc
Q 014576 6 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYID----QTPD-LDTRIELIKTLNSVSA 80 (422)
Q Consensus 6 D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~----~~~~-~~~~~~li~tL~~~~~ 80 (422)
+..+..+.+...++....+..|+.+.+.+.......++.+.+.+.+++....+.. .++. .+.+++-+++....++
T Consensus 42 ~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~ 121 (429)
T 4b4t_R 42 QRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLE 121 (429)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444456666666655556677778888888887765443 2322 1344566776666677
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccc
Q 014576 81 GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV 160 (422)
Q Consensus 81 ~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~ 160 (422)
++.+.|.|++++..+||++|++.||+++|++++..+..+|.+ .++|++++|.++|++++.+||.+++.+++|++...
T Consensus 122 ~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 122 EDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI 198 (429)
T ss_dssp HCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 778888999999999999999999999999999999998864 47999999999999999999999999999998876
Q ss_pred ccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 014576 161 FDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKI 240 (422)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~ 240 (422)
..+ ++ .+.+.+++.+.+.++.+.++|.+||++|++++.++...+.. .+..++.+
T Consensus 199 ~~~--------~d----------------~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~-~~~~~~~y- 252 (429)
T 4b4t_R 199 EKG--------GD----------------WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELT-SYESIATY- 252 (429)
T ss_dssp TTC--------CC----------------THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHH-HHHHHHHH-
T ss_pred hcC--------CC----------------HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchh-hHHHHHHH-
Confidence 543 12 37788899999999999999999999999999999876543 33344444
Q ss_pred HHHHHhCCCChhhhHHhhhhhcccC----CCC---ChhHHHHHHHhcccccccchhhHHHHHHHhhh-hhhhcCCchhhh
Q 014576 241 CWYLVLAPHDPMQSSLLNSTLEDKN----LSE---IPNFRLLLKQLVTMEVIQWTSLWNTYKDEFEN-ETNMLGGSLGAK 312 (422)
Q Consensus 241 v~~~ILa~~~~~rs~ll~~~~~d~~----~~~---ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~~-~~~~~~d~~~~~ 312 (422)
+++++..++.|+++..++..++. +.. ++.+..++.+|.+.....+ |...+.. ...+..|++...
T Consensus 253 --~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~------~~~~l~~~~~~l~~d~~l~~ 324 (429)
T 4b4t_R 253 --ASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASY------FPYLLETYANVLIPCKYLNR 324 (429)
T ss_dssp --HHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHSTTTTTCTTSTT
T ss_pred --HHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHH------HHHHHHHHHhhhccCHHHHH
Confidence 44445555667777777766532 233 3445566777766444221 2222221 223446888999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHH
Q 014576 313 AAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWA 392 (422)
Q Consensus 313 ~~~~L~~~viEhNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~ 392 (422)
||..|.+++++||+..+++||++|+|++||++||+|++++|+.|++||.+|+|+|||||++|+|+|.+|++.+..++.|.
T Consensus 325 h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i 404 (429)
T 4b4t_R 325 HADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLV 404 (429)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC------------
T ss_pred HHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 014576 393 MNLEKLLDLVEKSCHQIH 410 (422)
Q Consensus 393 ~~I~~l~~~v~k~~~lI~ 410 (422)
++++.|++.++|.+++|.
T Consensus 405 ~~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 405 KQGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999874
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-40 Score=330.26 Aligned_cols=371 Identities=14% Similarity=0.172 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHhhhcCCCC-HHHHHHHHHHHHh--hhcCcchHH
Q 014576 11 KKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQL-KQAVTAMVQQAMQYIDQTPD-LDTRIELIKTLNS--VSAGKIYVE 86 (422)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~ql-k~ai~~~v~~~~~~l~~~~~-~~~~~~li~tL~~--~~~~ki~~E 86 (422)
.+++..++.+|++.|+|+.+++++..+.+.++++ +....++|...++.+...++ .+..+.+++.... ...+..+.
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 133 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL- 133 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH-
Confidence 4568999999999999999999999999999998 66688999999999988886 4555666663322 33444554
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCc
Q 014576 87 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 166 (422)
Q Consensus 87 ~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~ 166 (422)
++++...||.+|.+.|+|.+|.++++++..++.+.+++..++++++.++++|+..|||.+|..+++++.......+
T Consensus 134 --~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-- 209 (434)
T 4b4t_Q 134 --KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-- 209 (434)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--
T ss_pred --HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC--
Confidence 8999999999999999999999999999999999999999999999999999999999999999999977543211
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCC---hhhHHHHHHHHHHH
Q 014576 167 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKED---PAQWMPVLRKICWY 243 (422)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d---~~~~~~~L~~~v~~ 243 (422)
.....+..++.+++.++.+.++|.+|+++|.++++++...++ ...+..++.++++|
T Consensus 210 ---------------------~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (434)
T 4b4t_Q 210 ---------------------CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLS 268 (434)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred ---------------------CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 124678899999999999999999999999999987654332 23567788888888
Q ss_pred HHhCCCChhhhHHhhhhh--cccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHHHHH
Q 014576 244 LVLAPHDPMQSSLLNSTL--EDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRI 321 (422)
Q Consensus 244 ~ILa~~~~~rs~ll~~~~--~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~~~v 321 (422)
.++.+........+.... .....+.+|.+..+..+|.+.++..|+.+...|...+. .|++...++..+.+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~ 342 (434)
T 4b4t_Q 269 KIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELM------GDELTRSHFNALYDTL 342 (434)
T ss_dssp HHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHT------CSHHHHHHHHHHHHHH
T ss_pred HHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHH
Confidence 888888766665555432 22234568899999999999999888776666665554 6777889999999999
Q ss_pred HHHHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHHHHHHHHHH
Q 014576 322 IEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDL 401 (422)
Q Consensus 322 iEhNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~~I~~l~~~ 401 (422)
++||++.+++||++|++++||++||+|++++|..|++||.+|+|+|+|||++|+|+|.++..++..+++|.+.+.++.+.
T Consensus 343 ~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~ 422 (434)
T 4b4t_Q 343 LESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKV 422 (434)
T ss_dssp HHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC----------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877788999999999999888
Q ss_pred HHHHHhhhhhHHHhh
Q 014576 402 VEKSCHQIHKETMVH 416 (422)
Q Consensus 402 v~k~~~lI~ke~~~~ 416 (422)
|+. |++|..|+|
T Consensus 423 vd~---L~~ka~~ly 434 (434)
T 4b4t_Q 423 VDQ---LFEKASVLY 434 (434)
T ss_dssp ---------------
T ss_pred HHH---HHHHHHHhC
Confidence 876 689999887
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.4e-21 Score=195.35 Aligned_cols=284 Identities=15% Similarity=0.142 Sum_probs=192.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhc---c--------CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccccc
Q 014576 94 KKLAKIKEEQGLIAEAADLMQEVAVETFG---A--------MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFD 162 (422)
Q Consensus 94 ~~La~i~e~~g~~~eAa~iL~~l~vEt~~---~--------~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~ 162 (422)
..+....+...|..+|.+.|.++...... . -.....+-+.+.++|+|++.+|...|+.+++++......
T Consensus 80 ~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~ 159 (393)
T 4b4t_O 80 KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDK 159 (393)
T ss_dssp HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Confidence 34555677888999999999987533211 0 122457788899999999999999999999999876543
Q ss_pred CCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCC--CChhhHHHHHHHH
Q 014576 163 ADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIK--EDPAQWMPVLRKI 240 (422)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~--~d~~~~~~~L~~~ 240 (422)
..+ + ......+||.+.+.||...++|-++++++...+.+.... -++.++....-.+
T Consensus 160 ~~~--------~--------------~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l 217 (393)
T 4b4t_O 160 KDS--------I--------------PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDL 217 (393)
T ss_dssp SCC--------S--------------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHH
T ss_pred cCC--------c--------------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHH
Confidence 211 1 136788999999999999999999999888887654322 2344555666688
Q ss_pred HHHHHhCCCChhhhHHhhhhhccc--CCCCChhHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHH
Q 014576 241 CWYLVLAPHDPMQSSLLNSTLEDK--NLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLR 318 (422)
Q Consensus 241 v~~~ILa~~~~~rs~ll~~~~~d~--~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~ 318 (422)
+++++++|..+...+++...+.+. ..++.+.+..|+++|...++ ..|...+..+... .|....+...+.
T Consensus 218 ~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~-------~~f~~~~~~~~~~--~~~l~~~~~~l~ 288 (393)
T 4b4t_O 218 SISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDF-------DKFDSLIKVQISK--IPILAQHESFLR 288 (393)
T ss_dssp HHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCH-------HHHHHHCCHHHHH--SHHHHHHHHHHH
T ss_pred HHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCH-------HHHHHHHHHhhhh--CcchhhhHHHHH
Confidence 999999999999999998887543 23567778899999998877 5555544422111 233344455566
Q ss_pred HHHHHHHHHH--HhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCCh----------HH
Q 014576 319 QRIIEHNILV--VSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDS----------ND 386 (422)
Q Consensus 319 ~~viEhNi~~--isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~----------~~ 386 (422)
+.++...+.. .+++|.+|+++.||+.||+|++++|..+++||.+|.|.|+|||++|+|+|.+..+. .+
T Consensus 289 ~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~ 368 (393)
T 4b4t_O 289 QKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKD 368 (393)
T ss_dssp HHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC------------------
T ss_pred HHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHH
Confidence 6665555544 45789999999999999999999999999999999999999999999999864321 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 014576 387 ILNSWAMNLEKLLDLVEKSCHQ 408 (422)
Q Consensus 387 ~l~~W~~~I~~l~~~v~k~~~l 408 (422)
.|+.|+.++.++++.|+..+.-
T Consensus 369 ~L~~W~~~v~~l~~~ve~~~~~ 390 (393)
T 4b4t_O 369 RLVEWNDQVEKLGKKMEARGQS 390 (393)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999886643
No 6
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.84 E-value=9.4e-22 Score=155.89 Aligned_cols=74 Identities=34% Similarity=0.495 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCC
Q 014576 310 GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD 383 (422)
Q Consensus 310 ~~~~~~~L~~~viEhNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~ 383 (422)
..++|+.|+++|+||||+++++||++|+|++||++|++|++++|+.+++||.+|+|+|+||||+|+|+|.++.+
T Consensus 5 ~~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 5 SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999987643
No 7
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-18 Score=179.89 Aligned_cols=247 Identities=18% Similarity=0.174 Sum_probs=173.3
Q ss_pred chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHH
Q 014576 125 AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYY 204 (422)
Q Consensus 125 ~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~ 204 (422)
|..-...++-...|.||+.++|..|..+++|+. |.... ... ....+|+-+.++++
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~---------------------~sn-~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE---YPHTD---------------------VSS-SLEARYFFYLSKIN 280 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTT---------------------SCH-HHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCccc---------------------CCH-HHHHHHHHHHHHHH
Confidence 555667788889999999999999999999995 21100 122 23468999999999
Q ss_pred HhhccHHHHHHHHHHHhhc-CCCCCChhhHHHHHHHHHHHHHhCCCChhhhHHhhhhhcccCCCCChhHHHHHHHhcccc
Q 014576 205 SHNNDYLEICRCYKAIYEI-PYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTME 283 (422)
Q Consensus 205 ~~~~~y~ea~~~y~e~~~~-~~~~~d~~~~~~~L~~~v~~~ILa~~~~~rs~ll~~~~~d~~~~~ip~~~~L~k~f~~~e 283 (422)
..+++|.+|..++..++.. |........+..+++++|++.+|.+.-|+|+.+.....+. .+..|..|.++|...+
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~----~L~pY~~Lv~Avr~Gd 356 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQK----SLLPYYHLTKAVKLGD 356 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHH----HHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHH----HHHHHHHHHHHHHcCC
Confidence 9999999999999999864 3222122356789999999999999889887665433322 2556789999999888
Q ss_pred cccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhCCC-HHHHHHHHHHHHhc
Q 014576 284 VIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLS-IQEAEKHLSDMVVS 362 (422)
Q Consensus 284 li~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~~~viEhNi~~isk~Ys~Isl~~La~ll~ls-~~e~E~~ls~mI~~ 362 (422)
+-.|..+.+.++..|. .|. .-.-...|+..++.++|+.+++.|++|+++.+|..|+++ ++++|.++++||.+
T Consensus 357 L~~F~~~L~~h~~~F~------~Dg-ty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~d 429 (523)
T 4b4t_S 357 LKKFTSTITKYKQLLL------KDD-TYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRD 429 (523)
T ss_dssp HHHHHHHHHHTHHHHH------HTT-CTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcceec------cCC-hhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 8555554444444443 222 123457788999999999999999999999999999995 78899999999999
Q ss_pred CeEEEEeccCCcEEEEccCCC---hHHHHHHHHHHHHHHHHHHHHHHh
Q 014576 363 KALVAKIDRPQGIVCFQVAKD---SNDILNSWAMNLEKLLDLVEKSCH 407 (422)
Q Consensus 363 ~~i~akIDq~~giV~F~~~~~---~~~~l~~W~~~I~~l~~~v~k~~~ 407 (422)
|.|.|.||+.+|+|.|....+ +.+.+..|..+|..++++-+....
T Consensus 430 G~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~vk 477 (523)
T 4b4t_S 430 GVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLV 477 (523)
T ss_dssp TSSCCEECTTTCCEECCSSSCC--------------------------
T ss_pred CCceEEEecCCCEEEeCccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999976543 356788999999877776565443
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.38 E-value=4e-12 Score=117.21 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHhCCCChhhhHHhhhhhcccCCCCCh
Q 014576 191 ELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIP 270 (422)
Q Consensus 191 dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ILa~~~~~rs~ll~~~~~d~~~~~ip 270 (422)
....+|+=+.++++..+++|.+|..++.+++....-. ....+..+|++.|.+.+|...-|.+. ++.+ +. ..
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-~~~~k~~IL~yLIp~~Ll~G~iP~~~-ll~~-~~------~~ 81 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-SQKNKRMILIYLLPVKMLLGHMPTVE-LLKK-YH------LM 81 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHTTCEECHH-HHHH-TT------CG
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-HHHHHHHHHHHHHHHHHHcCCCCCHH-Hhhh-Cc------hh
Confidence 3455788888899999999999999999999753321 12356789999999999987756554 2322 21 12
Q ss_pred hHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHHHHHHHHHhh------hcccccHHHHHHH
Q 014576 271 NFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSK------YYSRITLKRLAEL 344 (422)
Q Consensus 271 ~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~~~viEhNi~~isk------~Ys~Isl~~La~l 344 (422)
.|..|.+++.+.++..|..+.+.++..|. +++.-.+-.++....++.+.+ .|++|+++.++..
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~-----------~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~ 150 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFFI-----------RCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVA 150 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHHH-----------HHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHH-----------HCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 47899999999999666555555554443 222122334444444444333 6999999999999
Q ss_pred hC------CCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccC
Q 014576 345 LC------LSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVA 381 (422)
Q Consensus 345 l~------ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~ 381 (422)
++ ++++|+|-.+++||.+|.|.|+||+.+|++++.+.
T Consensus 151 l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 151 LKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCC
Confidence 95 48999999999999999999999999999998764
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.1e-09 Score=107.99 Aligned_cols=247 Identities=11% Similarity=0.082 Sum_probs=166.3
Q ss_pred hccHHHHHHHHHHHHHHhhc--c--C----chHHHHHHHH--HHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCC
Q 014576 103 QGLIAEAADLMQEVAVETFG--A--M----AKTEKIAFIL--EQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKP 172 (422)
Q Consensus 103 ~g~~~eAa~iL~~l~vEt~~--~--~----~~~eK~e~~L--e~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~ 172 (422)
....++|++++...=--+.+ + + +.+.++-+++ ...++|+..++..-|+.+.+.+....+- ++..
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~-p~~~----- 212 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSML-AHFN----- 212 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCC-SCGG-----
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCC-cChh-----
Confidence 34678888888874322211 1 1 1134444433 2358899999999999999888765321 1110
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCCCCC---hhhHHHHHHHHHHHHHhC
Q 014576 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI--PYIKED---PAQWMPVLRKICWYLVLA 247 (422)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~--~~~~~d---~~~~~~~L~~~v~~~ILa 247 (422)
. .+ .....+|+=+.++++..+++|.+|..++.+++.. +..... ...+..+|++.|.+.+|.
T Consensus 213 --------~----~p--~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLl 278 (455)
T 3t5v_B 213 --------E----YQ--LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLIL 278 (455)
T ss_dssp --------G----SC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------h----CC--ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHc
Confidence 0 11 2456688888889999999999999999999975 322111 124567999999999999
Q ss_pred CCChhhhHHhhhhhcccCCCCCh-hHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHHHHHH
Q 014576 248 PHDPMQSSLLNSTLEDKNLSEIP-NFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNI 326 (422)
Q Consensus 248 ~~~~~rs~ll~~~~~d~~~~~ip-~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~~~viEhNi 326 (422)
..-|.++- +.+.+ + +.+. .|..|.++....++..|..+.+.++..|...-. --.-...++..+ -.|+
T Consensus 279 G~~P~~~l-l~k~~-~---~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi------ly~LlerLr~~v-~RnL 346 (455)
T 3t5v_B 279 GKMVKWGP-LRPFL-S---QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL------LIVLLEKLPMVT-YRNL 346 (455)
T ss_dssp TCCBCHHH-HGGGS-C---HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC------HHHHHHHHHHHH-HHHH
T ss_pred CCCCCHHH-Hcccc-h---HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC------HHHHHHHHHHHH-HHHH
Confidence 87777763 44433 1 2343 488899999999997666666666655542100 000011121111 2233
Q ss_pred HH-----Hhhhc--ccccHHHHHHHhC---------------------CCHHHHHHHHHHHHhcCeEEEEeccCCcEEEE
Q 014576 327 LV-----VSKYY--SRITLKRLAELLC---------------------LSIQEAEKHLSDMVVSKALVAKIDRPQGIVCF 378 (422)
Q Consensus 327 ~~-----isk~Y--s~Isl~~La~ll~---------------------ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F 378 (422)
.+ .+.+| ++|+++.++..|+ ++++|+|-.++.||.+|.|.|+||+..|+|++
T Consensus 347 irkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVl 426 (455)
T 3t5v_B 347 IKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVV 426 (455)
T ss_dssp HHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEE
T ss_pred HHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEE
Confidence 22 35668 8999999999997 58999999999999999999999999999999
Q ss_pred ccC
Q 014576 379 QVA 381 (422)
Q Consensus 379 ~~~ 381 (422)
.+.
T Consensus 427 SK~ 429 (455)
T 3t5v_B 427 KKT 429 (455)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.80 E-value=0.00091 Score=62.24 Aligned_cols=204 Identities=15% Similarity=0.098 Sum_probs=120.3
Q ss_pred HHHhccCCHHHHHHHHHHhccccccC---CCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHH
Q 014576 138 RLCLDRQDYVRAQILSRKISPRVFDA---DPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEIC 214 (422)
Q Consensus 138 rL~l~~~D~~~a~~~~~K~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~ 214 (422)
+=.++.+||..|...++++....... +|. .......+=...|+.-+++....+|.-+ +
T Consensus 15 ~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~------------------~~~~~~~~ar~vyE~~a~~al~~~D~~~-F 75 (229)
T 4b0z_A 15 ADLYDRKDWNACKKELLKLKVELAKQNLFVPT------------------SDKEKASFARNVFEYGVLVSIQTCDIES-F 75 (229)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCC------------------SCHHHHHHHHHHHHHHHHHHHHTTCHHH-H
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcCCCCCC------------------CChHHHHHHHHHHHHHHHHHHHcCCHHH-H
Confidence 33467889999998888875321110 111 0011112345777777788777766543 3
Q ss_pred HHHHH-HhhcC--CCCCChhhHHHHHHHHHHHHHhCCCChhhhHHhhhhhcccCCCCChhHH---HHHHHhcccccccch
Q 014576 215 RCYKA-IYEIP--YIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFR---LLLKQLVTMEVIQWT 288 (422)
Q Consensus 215 ~~y~e-~~~~~--~~~~d~~~~~~~L~~~v~~~ILa~~~~~rs~ll~~~~~d~~~~~ip~~~---~L~k~f~~~eli~~~ 288 (422)
..|.. +-..+ .....+ .....+.+.++|.++.+-.++....+..+.....+.+-|..+ .|.++...
T Consensus 76 ~~~~~qLk~~Y~~~~~~s~-~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~------- 147 (229)
T 4b0z_A 76 ARYASQVIPFYHDSLVPSS-RMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVME------- 147 (229)
T ss_dssp HHHHHHHHHHHSSCCCCCT-THHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHccCCCCc-cHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHc-------
Confidence 33332 22111 122222 445688888999988887777776666654322112233333 45555544
Q ss_pred hhHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhCCC-HHHHHHHHHHHHhcCeEEE
Q 014576 289 SLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLS-IQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 289 ~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~~~viEhNi~~isk~Ys~Isl~~La~ll~ls-~~e~E~~ls~mI~~~~i~a 367 (422)
..|..+|..... .+.+...-....+..+++..-+..+.+-|.+|+++.++++||++ +++++.++..- | =
T Consensus 148 ---GnY~kff~l~~~-~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---g---w 217 (229)
T 4b0z_A 148 ---GAFDKVASMIRS-CNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---G---W 217 (229)
T ss_dssp ---TCHHHHHHHHHT-CCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---T---C
T ss_pred ---CCHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---C---C
Confidence 345555442111 12222233446677889999999999999999999999999994 78888887663 3 2
Q ss_pred EeccCCcEEEEcc
Q 014576 368 KIDRPQGIVCFQV 380 (422)
Q Consensus 368 kIDq~~giV~F~~ 380 (422)
.|+ +|.|.|.+
T Consensus 218 ~i~--dg~i~F~~ 228 (229)
T 4b0z_A 218 DIR--DGVIYFPK 228 (229)
T ss_dssp EEE--TTEEECC-
T ss_pred EEe--CCEEecCC
Confidence 343 78888864
No 11
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.76 E-value=0.0002 Score=63.51 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=81.1
Q ss_pred HHHHHHHhCCCChhhhHHhhhhh-cccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHH
Q 014576 239 KICWYLVLAPHDPMQSSLLNSTL-EDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDL 317 (422)
Q Consensus 239 ~~v~~~ILa~~~~~rs~ll~~~~-~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L 317 (422)
.++..++.+|.--.=.++|.... +.-+..+-+.+..|++.|....+ ..|...-.....+ . ..+
T Consensus 28 ~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~-------~~y~~~~~~~p~L-----~----~~~ 91 (169)
T 3chm_A 28 PLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTW-------GDYKCNATRLPHL-----S----PDQ 91 (169)
T ss_dssp HHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCH-------HHHHHHGGGSCCC-----C----HHH
T ss_pred HHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCH-------HHHHHhHHhCcch-----H----HHH
Confidence 45567777774322233443221 11011224557789999987655 4554422211111 1 223
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHhCCC-HHHHHHHHH-HHHhcCeEEEEeccCCcEEEEccCC
Q 014576 318 RQRIIEHNILVVSKYYSRITLKRLAELLCLS-IQEAEKHLS-DMVVSKALVAKIDRPQGIVCFQVAK 382 (422)
Q Consensus 318 ~~~viEhNi~~isk~Ys~Isl~~La~ll~ls-~~e~E~~ls-~mI~~~~i~akIDq~~giV~F~~~~ 382 (422)
.+.++.=-+..++.--..|+++.|++.++++ ++++|..+. +.|..|-|.|||||+++.|+..+..
T Consensus 92 ~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~ 158 (169)
T 3chm_A 92 ILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAA 158 (169)
T ss_dssp HHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeec
Confidence 3333333333344347899999999999999 999999999 9999999999999999998776543
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.13 E-value=0.051 Score=44.19 Aligned_cols=156 Identities=10% Similarity=-0.075 Sum_probs=108.0
Q ss_pred CChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcch
Q 014576 5 GDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIY 84 (422)
Q Consensus 5 ~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~ 84 (422)
+|......++..++..++..|+|+.-.+.+.... . ..+..++.
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----------~--------~~~~~~~~------------------- 45 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL----------L--------IAKEFGDK------------------- 45 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------H--------HHHHHTCH-------------------
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------H--------HHHHhCCc-------------------
Confidence 5667778888889999988888887655554311 1 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCC
Q 014576 85 VEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDAD 164 (422)
Q Consensus 85 ~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~ 164 (422)
...+.....+|.++...|++++|.+.+....--....-+.......+.....++...+++..|..+.+++....-...
T Consensus 46 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 46 --AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 113456778999999999999999998875532222334556678888889999999999999999999865432110
Q ss_pred CccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 165 PSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
........+...+..+...++|-+|..+|.++...
T Consensus 124 ------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 124 ------------------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------------------chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11233455667778888999999999999887764
No 13
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.13 Score=48.99 Aligned_cols=111 Identities=10% Similarity=-0.065 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+.+...+|.++...|++++|...+....--....-+.......+.....++...|++..|..+++++........
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 261 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---- 261 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc----
Confidence 4667889999999999999999998875532222334456677888889999999999999999999865432110
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
........+...+..+...++|-+|..+|.++...
T Consensus 262 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 262 --------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 12334456677788899999999999999988864
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.96 E-value=0.22 Score=45.53 Aligned_cols=195 Identities=9% Similarity=0.043 Sum_probs=122.2
Q ss_pred cCCChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhH-----HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh
Q 014576 3 LSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQL-----KQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNS 77 (422)
Q Consensus 3 ~~~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~ql-----k~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~ 77 (422)
.+.|-+....++..++..++..|+|+...+.+....+..... ..........+..+. ..-+.+.-...++....
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKDAANLLNDALA 97 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 356778889999999999999999999888777644321111 011111111111111 12222222333332111
Q ss_pred hh----cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHHHHHhccCCHHHHHH
Q 014576 78 VS----AGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG--AMAKTEKIAFILEQVRLCLDRQDYVRAQI 151 (422)
Q Consensus 78 ~~----~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~--~~~~~eK~e~~Le~~rL~l~~~D~~~a~~ 151 (422)
.. .+. ..........+|.++...|++++|...++...--... .-+.......+....+++...|++..|..
T Consensus 98 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 98 IREKTLGKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp HHHHHHCTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhCCC---ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 11 010 0224667889999999999999999998875432211 12335667788888999999999999999
Q ss_pred HHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 152 LSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 152 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+++++....-...+ .........+...+..+...++|-+|..+|.++...
T Consensus 175 ~~~~a~~~~~~~~~----------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 175 YYQRALEIYQTKLG----------------------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHTSC----------------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998664321100 001223355667788899999999999999998863
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.94 E-value=0.096 Score=48.08 Aligned_cols=111 Identities=10% Similarity=-0.065 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+.+...++.++...|++++|...+....--....-+.......+.....++...|++..|..+++++........
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---- 257 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---- 257 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc----
Confidence 4567788999999999999999998875432222334556677888889999999999999999998865432210
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
........+...+..+...++|-+|..+|.++...
T Consensus 258 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 258 --------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12334456667788899999999999999888764
No 16
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.87 E-value=0.14 Score=48.80 Aligned_cols=111 Identities=11% Similarity=-0.067 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+.....+|.++...|++++|...++...--....-+.......+.....++...|++.+|..++.++....-...
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---- 301 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN---- 301 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC----
Confidence 4567889999999999999999999875532222334556688888899999999999999999999866432110
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. .......+...+..+...++|-+|..+|.++...
T Consensus 302 -------------------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 302 -------------------D-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp -------------------C-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------------C-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 1233456667788899999999999999998875
No 17
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.85 E-value=0.12 Score=49.79 Aligned_cols=112 Identities=6% Similarity=-0.135 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+.....+|.++...|++++|...++...--....-+.......+.....++...|++.+|..+++++....-...
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 337 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG---- 337 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC----
Confidence 4567789999999999999999999875533222334456678888899999999999999999999866432110
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
........+..++..+...++|-+|..+|.++....
T Consensus 338 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 338 --------------------DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 012334566677889999999999999999988754
No 18
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.83 E-value=0.11 Score=50.12 Aligned_cols=111 Identities=9% Similarity=-0.075 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+.....+|.++...|++++|...++...--....-+.......+.....++...|++..|..++.++........
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 297 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG---- 297 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC----
Confidence 4567788999999999999999998875432222234456667888889999999999999999998866432110
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
........+..++..+...++|-+|..+|.++...
T Consensus 298 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 298 --------------------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11233456677788899999999999999988764
No 19
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.65 E-value=0.33 Score=43.34 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=119.7
Q ss_pred CChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhH-----HHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHH--
Q 014576 5 GDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQL-----KQAVTAMVQQAMQYIDQTPDLDTRIELIK-TLN-- 76 (422)
Q Consensus 5 ~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~ql-----k~ai~~~v~~~~~~l~~~~~~~~~~~li~-tL~-- 76 (422)
.|-+....++..++..++..|+|+.-.+.+........+. ..........+.-+. ..-+.+.-...++ .+.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~ 115 (283)
T 3edt_B 37 HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIR 115 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence 3556677888889999999999998887776544322111 111111122122222 2223332233333 222
Q ss_pred -hhhcCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHHHHHhccCCHHHHHHHH
Q 014576 77 -SVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG--AMAKTEKIAFILEQVRLCLDRQDYVRAQILS 153 (422)
Q Consensus 77 -~~~~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~--~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~ 153 (422)
...... ..........+|.++...|++++|...+....--... .-+.......+....+++...|++.+|..++
T Consensus 116 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 116 EKVLGKF---HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HHHHCTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 111110 0234667889999999999999999998876532211 1224456778888899999999999999999
Q ss_pred HHhccccccCC-CccccC--------------CC-CCCC----cccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHH
Q 014576 154 RKISPRVFDAD-PSKEKK--------------KP-KEGD----NVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 213 (422)
Q Consensus 154 ~K~~~~~~~~~-~~~~~~--------------~~-~~~~----~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea 213 (422)
+++........ +...+. .. .... ......+..... .......+..++..+...++|-+|
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A 271 (283)
T 3edt_B 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAA 271 (283)
T ss_dssp HHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88865321100 000000 00 0000 000001111111 122334566778888999999999
Q ss_pred HHHHHHHhhc
Q 014576 214 CRCYKAIYEI 223 (422)
Q Consensus 214 ~~~y~e~~~~ 223 (422)
..+|..+...
T Consensus 272 ~~~~~~al~~ 281 (283)
T 3edt_B 272 HTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999888763
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.63 E-value=0.4 Score=43.82 Aligned_cols=191 Identities=13% Similarity=0.036 Sum_probs=114.5
Q ss_pred ChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHhhhcC
Q 014576 6 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSK---KRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIK-TLNSVSAG 81 (422)
Q Consensus 6 D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k---~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~-tL~~~~~~ 81 (422)
|......++..+...+...|+|+...+.+..... ..+............+.-+. ..-+.+.-...++ .+.-....
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 38 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHh
Confidence 3333456777788888888888887776654321 11111111111111111111 1222222223333 22211110
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHh
Q 014576 82 KIYVEIERARLIKKLAKIKEEQGL--------------------IAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCL 141 (422)
Q Consensus 82 ki~~E~era~l~~~La~i~e~~g~--------------------~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l 141 (422)
. -....+.+...++.++...|+ +++|...+....--....-+.......+.....++.
T Consensus 117 ~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 117 N--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY 194 (338)
T ss_dssp T--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred c--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 0 012246678899999999999 999999887754222122345566778888899999
Q ss_pred ccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Q 014576 142 DRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIY 221 (422)
Q Consensus 142 ~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~ 221 (422)
..|++..|..+.+++....... .........+...+..+...++|-+|-.+|.++.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEF------------------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHH------------------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhc------------------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999886543211 0123334566777888899999999999999887
Q ss_pred hc
Q 014576 222 EI 223 (422)
Q Consensus 222 ~~ 223 (422)
..
T Consensus 251 ~~ 252 (338)
T 3ro2_A 251 LL 252 (338)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 21
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.60 E-value=0.41 Score=43.61 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=115.4
Q ss_pred ChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhH-----HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhh-
Q 014576 6 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQL-----KQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVS- 79 (422)
Q Consensus 6 D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~ql-----k~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~- 79 (422)
|-+....+...++..+...|+|+...+.+.......... ..........+.-+ -..-+.+.-...++......
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888877776544221111 11111111111111 12223332233333222111
Q ss_pred ---cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 014576 80 ---AGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA--MAKTEKIAFILEQVRLCLDRQDYVRAQILSR 154 (422)
Q Consensus 80 ---~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~--~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~ 154 (422)
.+. . .....+...+|.++...|++++|...++...--.... -+.......+....+++...|++.+|..+++
T Consensus 143 ~~~~~~-~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 143 KVLGKD-H--PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp HHHCTT-C--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCC-C--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111 0 2246677889999999999999999998865332111 2244567788888999999999999999998
Q ss_pred HhccccccC-----CCcc------------------ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHH
Q 014576 155 KISPRVFDA-----DPSK------------------EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYL 211 (422)
Q Consensus 155 K~~~~~~~~-----~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ 211 (422)
++....... .+.. .......+.. .++.+... .......+...+..+...++|-
T Consensus 220 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~ 295 (311)
T 3nf1_A 220 EILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG---WYKACKVD-SPTVTTTLKNLGALYRRQGKFE 295 (311)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH---HHhhcCCC-CchHHHHHHHHHHHHHHCCCHH
Confidence 886531100 0000 0000000000 01111111 1223355667778888899999
Q ss_pred HHHHHHHHHhh
Q 014576 212 EICRCYKAIYE 222 (422)
Q Consensus 212 ea~~~y~e~~~ 222 (422)
+|..+|.++..
T Consensus 296 ~A~~~~~~al~ 306 (311)
T 3nf1_A 296 AAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988775
No 22
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.49 E-value=0.087 Score=42.72 Aligned_cols=112 Identities=10% Similarity=-0.065 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
.++.+-..+|.++...|++++|...+....--....-+.......+.....++...+++.+|..+..++....-...
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--- 83 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--- 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---
Confidence 36778899999999999999999998875432222334556677888899999999999999999999876432210
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
........+..++..+...++|-+|..+|.++...
T Consensus 84 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 84 ---------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12334556677788899999999999999888764
No 23
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.43 E-value=0.63 Score=43.71 Aligned_cols=188 Identities=16% Similarity=0.148 Sum_probs=118.3
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHhh-
Q 014576 4 SGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLS---KKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIK-TLNSV- 78 (422)
Q Consensus 4 ~~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~---k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~-tL~~~- 78 (422)
.+|...........+.++...|+|+.-.+.+.... .+.+....+.....+-..-+.. ..+.+.-+..++ .+.-.
T Consensus 29 ~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~~ 107 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD-LQRMPEAVQYIEKASVMYV 107 (307)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 46777778888888888888899998877776433 2233333333333333333332 122221122232 22211
Q ss_pred hcCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Q 014576 79 SAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA-MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 157 (422)
Q Consensus 79 ~~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~-~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~ 157 (422)
..|. + ...+..-..+|.+|+. |++++|...++.-. +.+.. -+.......+.....++...|+|.+|..+++++.
T Consensus 108 ~~g~-~--~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 108 ENGT-P--DTAAMALDRAGKLMEP-LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp TTTC-H--HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCC-H--HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1121 1 1246677899999999 99999999887643 23322 2334557788889999999999999999999997
Q ss_pred cccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Q 014576 158 PRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIY 221 (422)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~ 221 (422)
....... . ......++...+..+...++|-+|-.+|.++.
T Consensus 183 ~~~~~~~-----------------------~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 183 SMYKEME-----------------------N-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTT-----------------------C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcC-----------------------C-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6432210 0 11223456666777888899999999999988
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.39 E-value=0.29 Score=42.27 Aligned_cols=173 Identities=10% Similarity=-0.005 Sum_probs=112.3
Q ss_pred ChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchH
Q 014576 6 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYV 85 (422)
Q Consensus 6 D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~ 85 (422)
+-+....+...++..+...|+++...+.+....+.....-.+.. ..+..+. ...+.+.-...++......+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~--- 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWL---VRAEIYQ-YLKVNDKAQESFRQALSIKPDS--- 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---HHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHH---HHHHHHH-HcCChHHHHHHHHHHHHhCCCC---
Confidence 45667788889999999999999998888765432222111111 1111111 1222333334444333333332
Q ss_pred HHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCC
Q 014576 86 EIERARLIKKLAKIKEEQ-GLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDAD 164 (422)
Q Consensus 86 E~era~l~~~La~i~e~~-g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~ 164 (422)
......+|.++... |++++|...+....- .+ ........+.....++...|++..|..+.+++.....
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 144 (225)
T 2vq2_A 76 ----AEINNNYGWFLCGRLNRPAESMAYFDKALA--DP--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--- 144 (225)
T ss_dssp ----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--ST--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---
T ss_pred ----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--Cc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence 33557899999999 999999999988653 11 1123456777888999999999999999998855321
Q ss_pred CccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 165 PSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+..+...++|-+|...|..+...
T Consensus 145 -----------------------~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 145 -----------------------QFP----PAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp -----------------------TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------------------CCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 001 23456677888899999999999988874
No 25
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.28 E-value=0.34 Score=40.20 Aligned_cols=171 Identities=10% Similarity=-0.047 Sum_probs=108.3
Q ss_pred ChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchH
Q 014576 6 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYV 85 (422)
Q Consensus 6 D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~ 85 (422)
|......+...++..+...|+++...+.+....+.....-.+.. ..+..+. ...+.+.-...++......+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~--- 75 (186)
T 3as5_A 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVAL---HLGIAYV-KTGAVDRGTELLERSLADAPDN--- 75 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHH---HHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---
T ss_pred ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHH---HHHHHHH-HcCCHHHHHHHHHHHHhcCCCC---
Confidence 34455677788888999999999988877654432221111111 1111111 1222333334444333333332
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCC
Q 014576 86 EIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 165 (422)
Q Consensus 86 E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~ 165 (422)
..+...+|.++...|++++|.+.+....--.. .-...+....+++...|++..|..+.+++.....
T Consensus 76 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---- 141 (186)
T 3as5_A 76 ----VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---- 141 (186)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc----
Confidence 34567889999999999999999887552211 1235677788999999999999999998865321
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 166 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. + ...+...+..+...++|-+|..+|..+...
T Consensus 142 ----------------------~--~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 ----------------------N--E--GKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp ----------------------T--C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------c--c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 0 123456677888899999999999887763
No 26
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.26 E-value=0.73 Score=42.75 Aligned_cols=186 Identities=15% Similarity=0.125 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHh-hhcCcchHHH
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQ--AVTAMVQQAMQYIDQTPDLDTRIELIK-TLNS-VSAGKIYVEI 87 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~--ai~~~v~~~~~~l~~~~~~~~~~~li~-tL~~-~~~~ki~~E~ 87 (422)
..+...+..++..++|+.+.+.+....+....... ........+..+.....+.+.-+..++ .|.- ...+..+.
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-- 153 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ-- 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH--
Confidence 34445567778889999998888775543221111 111111111112122223333344444 4431 12222332
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA-MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 166 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~-~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~ 166 (422)
.+.+-..||.+|...|++++|...++...--.... .+.......+.....+|...|+|.+|..+.+++....-....
T Consensus 154 -~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~- 231 (293)
T 3u3w_A 154 -NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS- 231 (293)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-
Confidence 45567899999999999999999988865322111 356677889999999999999999999999998664321100
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhcC
Q 014576 167 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNN-DYLEICRCYKAIYEIP 224 (422)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~-~y~ea~~~y~e~~~~~ 224 (422)
.......|...+..+...+ +|-+|-.+|..+....
T Consensus 232 -----------------------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 232 -----------------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp -----------------------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 0112345566667777777 5788888888777643
No 27
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.26 E-value=0.15 Score=47.59 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhc------CCCCHHHHHHHHHHHHh----hhcCcchHHHHHHHHHHHHHH
Q 014576 29 TLNEQIVNLSKKRGQLKQAVTAMVQQAMQYID------QTPDLDTRIELIKTLNS----VSAGKIYVEIERARLIKKLAK 98 (422)
Q Consensus 29 ~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~------~~~~~~~~~~li~tL~~----~~~~ki~~E~era~l~~~La~ 98 (422)
.+.+.|..+.+.+|-....++..+ -.-..+. ..|+.+.-..+.+.|.. +-.+...-+.+....-...+.
T Consensus 5 ~~g~~i~~~R~~~~~tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~ 83 (293)
T 3u3w_A 5 KLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVI 83 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHH
Confidence 355666777777776655555433 2222221 35777777777776652 222222222233333345577
Q ss_pred HHHHhccHHHHHHHHHHHHHHhhccCch-HHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCc
Q 014576 99 IKEEQGLIAEAADLMQEVAVETFGAMAK-TEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 177 (422)
Q Consensus 99 i~e~~g~~~eAa~iL~~l~vEt~~~~~~-~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~ 177 (422)
.+...|++++|.+.++.+.-.. ...++ .....++.-..-++...+++..|..+.+++........ ++
T Consensus 84 ~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--------~~--- 151 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--------DV--- 151 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--------CT---
T ss_pred HHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--------cH---
Confidence 8899999999999999876422 22222 23356666677888999999999999999976432211 01
Q ss_pred ccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q 014576 178 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 222 (422)
Q Consensus 178 ~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~ 222 (422)
......+...+..|...++|-+|-.+|..+..
T Consensus 152 -------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 152 -------------YQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp -------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12334567778889999999999999999985
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.68 Score=40.78 Aligned_cols=143 Identities=10% Similarity=0.040 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCc--chHH
Q 014576 9 GTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGK--IYVE 86 (422)
Q Consensus 9 s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~k--i~~E 86 (422)
+...++..++..++..|+|+.-.+.+....+.. ..-.+ ....+..+. ...+.+.-+..++......+.. -+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~---~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-- 75 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITY---LNNRAAAEY-EKGEYETAISTLNDAVEQGREMRADY-- 75 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHH---HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCH--
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHH---HHHHHHHHH-HcccHHHHHHHHHHHHHhCcccccch--
Confidence 456778889999999999999888877644332 11011 111111111 1222232233333222222211 11
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccC--------------------chHHHHHHHHHHHHHHhccCCH
Q 014576 87 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAM--------------------AKTEKIAFILEQVRLCLDRQDY 146 (422)
Q Consensus 87 ~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~--------------------~~~eK~e~~Le~~rL~l~~~D~ 146 (422)
.....+...+|.++...|++++|...++...--..... ........+.....++...|++
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 11256778899999999999999998887553110000 1112334445555556666666
Q ss_pred HHHHHHHHHhcc
Q 014576 147 VRAQILSRKISP 158 (422)
Q Consensus 147 ~~a~~~~~K~~~ 158 (422)
..|...++++..
T Consensus 156 ~~A~~~~~~a~~ 167 (258)
T 3uq3_A 156 PNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655543
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.27 Score=43.52 Aligned_cols=99 Identities=9% Similarity=-0.077 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
...+...+|.++...|++++|...+....--... -...+.....++...|++..|..+.+++.... +
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~---- 204 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD---P---- 204 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---H----
Confidence 4567788999999999999999999886532111 24677788899999999999999999986532 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+..++..+...++|-+|..+|..+...
T Consensus 205 -------------------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 -------------------NFV----RAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------HHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 001 23456678888999999999999988764
No 30
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.96 E-value=0.89 Score=41.07 Aligned_cols=184 Identities=13% Similarity=-0.010 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHH
Q 014576 9 GTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIE 88 (422)
Q Consensus 9 s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~e 88 (422)
.+...+...+..++..|+|+...+.+..+.+..................+. ..-+.+.-+..++.+....++.-.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~---- 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPR---- 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTT----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCch----
Confidence 456677888899999999999999888776543322111111112222222 122333334455544444443322
Q ss_pred HHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccC-chHH----------HHHHHHHHHHHHhccCCHHHH
Q 014576 89 RARLIKKLAKIKEE--------QGLIAEAADLMQEVAVETFGAM-AKTE----------KIAFILEQVRLCLDRQDYVRA 149 (422)
Q Consensus 89 ra~l~~~La~i~e~--------~g~~~eAa~iL~~l~vEt~~~~-~~~e----------K~e~~Le~~rL~l~~~D~~~a 149 (422)
.......+|.++.. .|++++|...+..+.-...++. ...- ..+..+...+++...|+|..|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 23456788999999 9999999999998764322221 1111 111226678899999999999
Q ss_pred HHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh----------hccHHHHHHHHHH
Q 014576 150 QILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH----------NNDYLEICRCYKA 219 (422)
Q Consensus 150 ~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~----------~~~y~ea~~~y~e 219 (422)
...++++.......+ ...+. +...+..+.. .++|-+|...|..
T Consensus 168 ~~~~~~~l~~~p~~~-----------------------~~~~a----~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 168 AVTYEAVFDAYPDTP-----------------------WADDA----LVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHCTTST-----------------------THHHH----HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCc-----------------------hHHHH----HHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 999999865431110 01122 2233343433 3889999999998
Q ss_pred HhhcC
Q 014576 220 IYEIP 224 (422)
Q Consensus 220 ~~~~~ 224 (422)
+....
T Consensus 221 ~~~~~ 225 (261)
T 3qky_A 221 LLQIF 225 (261)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 88754
No 31
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.93 E-value=0.96 Score=43.41 Aligned_cols=153 Identities=8% Similarity=-0.032 Sum_probs=90.7
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHhhh
Q 014576 4 SGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLS---KKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIK-TLNSVS 79 (422)
Q Consensus 4 ~~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~---k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~-tL~~~~ 79 (422)
.+|-.....+...++..++..|+++.-.+++..-. ++.+.....+.......-.......+.+.-+..++ ++.-..
T Consensus 136 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 215 (383)
T 3ulq_A 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215 (383)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35566677888888888888888888777765422 12221011111111111111111222222222333 222111
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 80 AGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA-MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 80 ~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~-~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
... -....+.....||.+|...|++++|...+....- .+.. -+.......+.....++...|++.+|..+.+++..
T Consensus 216 ~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 216 AEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA-VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 0122466778899999999999999999887543 2222 23244588888999999999999999999999865
Q ss_pred c
Q 014576 159 R 159 (422)
Q Consensus 159 ~ 159 (422)
.
T Consensus 293 ~ 293 (383)
T 3ulq_A 293 Y 293 (383)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.89 E-value=0.86 Score=40.35 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
......+|.++...|++++|...+....--. . .-...+.....++...|++..|..+++++.....
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------- 206 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-R-----NQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-------- 206 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------
Confidence 3445566777777777777777666543211 0 0134555666667777777777777766643210
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+.++...+++-+|..+|..+...
T Consensus 207 ------------------~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 207 ------------------QNA----RSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ------------------CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------CcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 000 12334456666677777777777666653
No 33
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.87 E-value=0.89 Score=42.31 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHhccccccCCCc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAM-AKTEKIAFILEQVRLCLDR-QDYVRAQILSRKISPRVFDADPS 166 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~-~~~eK~e~~Le~~rL~l~~-~D~~~a~~~~~K~~~~~~~~~~~ 166 (422)
.+..-..++.+|...|++++|...++.-. +.+... +...-...+.....+|... |++.+|..+++++........
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~-- 152 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ-- 152 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--
Confidence 35667789999999999999998877533 222222 2334466777888889986 999999999999976432110
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 167 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
. ...-...+...+..+...++|-+|..+|..+....
T Consensus 153 ---------------------~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 153 ---------------------S-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp ---------------------C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ---------------------C-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 0 11112445666788999999999999999999854
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.68 E-value=1.5 Score=41.43 Aligned_cols=240 Identities=7% Similarity=-0.070 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHHH
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERAR 91 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era~ 91 (422)
..+...+..++..|+|+...+.+....+.....-.+...+. ..+. ..-+.+.-+..++......+.. ..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~-~~g~~~~A~~~~~~al~~~p~~-------~~ 134 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLG---ITQA-ENENEQAAIVALQRCLELQPNN-------LK 134 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH---HHHH-HTTCHHHHHHHHHHHHHHCTTC-------HH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHH---HHHH-HCCCHHHHHHHHHHHHhcCCCC-------HH
Confidence 34567778888889999888887765533222211111111 1111 1222333333444333333332 44
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc-CchH---HHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGA-MAKT---EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~-~~~~---eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
....||.+|...|++++|...+....--.... .... ....+......++...|++.+|..+++++.......
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---- 210 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM---- 210 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc----
Confidence 66889999999999999999988765321110 0000 113344455788999999999999999986642110
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHhC
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLA 247 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ILa 247 (422)
.+. ..+...+..+...++|-+|..+|..+..... .++ .. ....+..|.-+.
T Consensus 211 ----------------------~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~-~~--~~~l~~~~~~~g 261 (365)
T 4eqf_A 211 ----------------------IDP--DLQTGLGVLFHLSGEFNRAIDAFNAALTVRP--EDY-SL--WNRLGATLANGD 261 (365)
T ss_dssp ----------------------CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCH-HH--HHHHHHHHHHTT
T ss_pred ----------------------cCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCH-HH--HHHHHHHHHHcC
Confidence 001 2345667888889999999999999987532 122 11 122222233322
Q ss_pred CCChhhhHHhhhhhcccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhh
Q 014576 248 PHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE 299 (422)
Q Consensus 248 ~~~~~rs~ll~~~~~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~ 299 (422)
.+..-...+-..+..+|. ....+..+..+|.. .=++.+....|...+.
T Consensus 262 ~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPG--FIRSRYNLGISCIN--LGAYREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH--HTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 222222211112222322 13335566666653 4456666566666665
No 35
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.67 E-value=0.1 Score=43.79 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=68.2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCC
Q 014576 95 KLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKE 174 (422)
Q Consensus 95 ~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~ 174 (422)
.|+.++.+.|++++|...++.. .-.+.+....++...++|...|+|.+|..+++++.... |
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a------~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~----p--------- 62 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGS------TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ----E--------- 62 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHH------SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---------
T ss_pred HhHHHHHHcChHHHHHHHHHHh------cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C---------
Confidence 4788889999999999877752 12344666677788999999999999999999986532 1
Q ss_pred CCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 175 GDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 175 ~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+.. ..+...+..+...++|-+|-.+|..+...
T Consensus 63 -------------~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 63 -------------RDP----KAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp -------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CCH----HHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 101 24556778888999999999999999874
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.58 E-value=0.82 Score=39.98 Aligned_cols=167 Identities=6% Similarity=-0.086 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHH
Q 014576 10 TKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIER 89 (422)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~er 89 (422)
...+...++..+...|+++...+.+....+.....-.+...+ +.-+. ...+.+.-...++......+..
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---a~~~~-~~~~~~~A~~~~~~~~~~~~~~------- 124 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA---GNVYV-VKEMYKEAKDMFEKALRAGMEN------- 124 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---HHHHH-HTTCHHHHHHHHHHHHHHTCCS-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH---HHHHH-HhccHHHHHHHHHHHHHhCCCC-------
Confidence 345666677777777887777766655432211111111000 11111 1222232233444333333322
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
..+...+|.++...|++++|...+....--. . .-...+.....++...|++..|..+++++.....
T Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------- 190 (243)
T 2q7f_A 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-E-----NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-------- 190 (243)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------
Confidence 2356678888899999999998887754211 1 1234666778888889999999888888754311
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+..+...++|-+|..+|..+...
T Consensus 191 ------------------~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 191 ------------------GHA----DAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp ------------------TCH----HHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred ------------------ccH----HHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 001 23455667778888888888888888764
No 37
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.56 E-value=0.3 Score=38.09 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+..-..+|..+...|++++|...+....--. . .-...+.....++...+++..|..+++++.......+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-P-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---- 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc----
Confidence 45667889999999999999999998754211 1 1246677788999999999999999999866432110
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
.........+...+..+...++|-+|-.+|..+....
T Consensus 73 -------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 73 -------------------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 0112223456667788889999999999999988754
No 38
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.54 E-value=0.93 Score=38.25 Aligned_cols=167 Identities=13% Similarity=0.016 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHH
Q 014576 10 TKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIER 89 (422)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~er 89 (422)
++.+-..++..+...|+|+.-.+.+....+.....-.+ ...-+.-+. ...+.+.-+..+.......+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~------- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET---LLKLGKTYM-DIGLPNDAIESLKKFVVLDTTS------- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCC-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHH-HCCCHHHHHHHHHHHHhcCchh-------
Confidence 45677889999999999999888877644322111111 111111111 1222333333444333333332
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
......++.++...|++++|...+....--. + .-.+.+.....++...|++.+|...++++.... |.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~----~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~--- 139 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALN----T--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK----PG--- 139 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----c--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc----ch---
Confidence 3456778999999999999999887644211 1 123456667889999999999999999986531 10
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.. ..+...+..+...++|-+|-.+|..+.+.
T Consensus 140 -------------------~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 140 -------------------FI----RAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -------------------CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------------------hh----hHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 01 23456678888999999999999999873
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.53 E-value=0.53 Score=44.22 Aligned_cols=161 Identities=9% Similarity=0.087 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHHH
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERAR 91 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era~ 91 (422)
.+-..+.+.+...|+++.....+...+ ..-...+.....++....+.+. .++.+..+....+..+ ...
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~~-------~~~~~a~~~la~~~~~~~~~~~---A~~~l~~ll~~~~~P~--~~~ 102 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPSS-------APELQAVRMFAEYLASHSRRDA---IVAELDREMSRSVDVT--NTT 102 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTTS-------CHHHHHHHHHHHHHHCSTTHHH---HHHHHHHHHHSCCCCS--CHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcccC-------ChhHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcccCCC--CHH
Confidence 344556777888888888776654311 1111223333344444444443 3333433221111100 234
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCC
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 171 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~ 171 (422)
+...+|.++...|++++|.+.+.. ..-.+.++..+++++..|++..|...++++.... +
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p------- 161 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---E------- 161 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---c-------
Confidence 678899999999999999998876 1224577778889999999999999999986531 1
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 172 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+ +....+......++...++|-+|...|.++...
T Consensus 162 ----------------~--~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 162 ----------------D--ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp ----------------T--CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ----------------C--cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 0 111122223334555678999999999999875
No 40
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.53 E-value=0.97 Score=38.41 Aligned_cols=117 Identities=14% Similarity=0.030 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccC--chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAM--AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 166 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~--~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~ 166 (422)
.+.....+|.++...|++++|...+....- .+... +.......+.....++...|++..|..++.++....-..
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 140 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERE-LLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--- 140 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---
Confidence 466778899999999999999999887542 22223 233677788888999999999999999999986542111
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCCh
Q 014576 167 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDP 230 (422)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~ 230 (422)
.........+..++..+...++|-+|..+|.++........|+
T Consensus 141 ---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 183 (203)
T 3gw4_A 141 ---------------------DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183 (203)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 0012233445677788999999999999999988764433333
No 41
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.52 E-value=1.5 Score=40.52 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHhhhc-CcchHH
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQ---LKQAVTAMVQQAMQYIDQTPDLDTRIELIK-TLNSVSA-GKIYVE 86 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~q---lk~ai~~~v~~~~~~l~~~~~~~~~~~li~-tL~~~~~-~ki~~E 86 (422)
..+...+..+...|+|+...+.+....+.... ....+..... ...+.....+.+.-+..++ .|..... ...+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~- 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYY-VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ- 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH-HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH-
Confidence 34445566778888998888777643322111 1111111111 1111122223333333333 3332111 11122
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCC
Q 014576 87 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 165 (422)
Q Consensus 87 ~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~ 165 (422)
.+.+-..+|.+|...|++++|...++...--... ..+.......+.....+|...|+|.+|..+.+++.........
T Consensus 154 --~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 154 --NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 4667789999999999999999999875521111 1222334478888899999999999999999998664321100
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHhhc
Q 014576 166 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI-CRCYKAIYEI 223 (422)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea-~~~y~e~~~~ 223 (422)
.......|...+..+...++|-+| -.+|..+...
T Consensus 232 ------------------------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 232 ------------------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp ------------------------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 011234566777888889999888 5556666554
No 42
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.38 E-value=0.49 Score=43.48 Aligned_cols=104 Identities=8% Similarity=0.070 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG---AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 166 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~---~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~ 166 (422)
..+...+|.++...|++++|...++...--... ..........+.....++...|++..|..+++++.......
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--- 269 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN--- 269 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc---
Confidence 446678899999999999999988875532211 11113345677788889999999999999999886532110
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 167 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. ..+...+..+...++|-+|..+|..+...
T Consensus 270 -----------------------~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 270 -----------------------A----STYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp -----------------------S----HHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred -----------------------h----HHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 0 23456678888899999999999988864
No 43
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.27 E-value=1.8 Score=39.91 Aligned_cols=101 Identities=12% Similarity=0.001 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCC
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 171 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~ 171 (422)
....+|.++...|++++|...++...-.. .-+.......+.....++...|++..|..+++++.... +
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~------- 303 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME---P------- 303 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---c-------
Confidence 35567999999999999999999865322 22444556677788899999999999999999986531 1
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 172 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
. +. ..+...+..+...++|-+|..+|..+....
T Consensus 304 ----------------~--~~--~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 304 ----------------D--NV--NALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp ----------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ----------------c--cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 0 01 245567788889999999999999999753
No 44
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.26 E-value=2.2 Score=40.85 Aligned_cols=151 Identities=9% Similarity=-0.015 Sum_probs=93.6
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---hhhhhHHHHHHHH-HHHHHhhhcCCCCHHHHHHHHH-HHHhh
Q 014576 4 SGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLS---KKRGQLKQAVTAM-VQQAMQYIDQTPDLDTRIELIK-TLNSV 78 (422)
Q Consensus 4 ~~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~---k~~~qlk~ai~~~-v~~~~~~l~~~~~~~~~~~li~-tL~~~ 78 (422)
..|-.....+...++..++..|+++.-.+++..-. ++.+.....+... ..-...+. ...+.+.-...++ ++.-.
T Consensus 134 ~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~ 212 (378)
T 3q15_A 134 VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELA 212 (378)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 35666777888899999999999998877776432 2222211111111 11111222 2222222222333 33211
Q ss_pred hc-CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 014576 79 SA-GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA-MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKI 156 (422)
Q Consensus 79 ~~-~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~-~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~ 156 (422)
.. +. ....+.+...||.+|...|++++|...+....- .+.. -++.. ...+....+++...|++.+|..+.+++
T Consensus 213 ~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 213 MDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK-VSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 11 123567888999999999999999999887553 2222 23334 888889999999999999999999998
Q ss_pred cccc
Q 014576 157 SPRV 160 (422)
Q Consensus 157 ~~~~ 160 (422)
....
T Consensus 288 l~~~ 291 (378)
T 3q15_A 288 LDHI 291 (378)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7643
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.25 E-value=1.5 Score=38.78 Aligned_cols=171 Identities=11% Similarity=-0.004 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHH
Q 014576 8 AGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEI 87 (422)
Q Consensus 8 ~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~ 87 (422)
.....+...++..+...|+|+...+.+....+.....-.+. ...+.-+. ...+.+.-...++......+.
T Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~~-~~~~~~~A~~~~~~a~~~~~~------ 103 (252)
T 2ho1_A 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAH---AALAVVFQ-TEMEPKLADEEYRKALASDSR------ 103 (252)
T ss_dssp HHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHH---HHHHHHHH-HTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHH---HHHHHHHH-HcCCHHHHHHHHHHHHHHCcC------
Confidence 33467778888888888888877776665432211110111 01111111 122233333344433333222
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
...+...+|.++...|++++|.+.+....- .. ........+.....++...|++..|..+++++.....
T Consensus 104 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------ 172 (252)
T 2ho1_A 104 -NARVLNNYGGFLYEQKRYEEAYQRLLEASQ---DT-LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR------ 172 (252)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---CT-TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------
T ss_pred -cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---Cc-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------
Confidence 134567788888888888888888877442 00 1123455667777888888888888888888754310
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+..+...++|-+|...|..+...
T Consensus 173 --------------------~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 173 --------------------NQP----SVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp --------------------CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------------------ccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000 23445667777888888888888887763
No 46
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.86 Score=44.16 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=111.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhh-----------------hhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh
Q 014576 16 EILQLCFEAKDWKTLNEQIVNLSKK-----------------RGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSV 78 (422)
Q Consensus 16 ~i~~~~~~~~~~~~l~~~i~~l~k~-----------------~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~ 78 (422)
.-++-+.+.|+|+...+.+..+.+. .+..-+++..+.. ......+.+.-.+.+..+...
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~----~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQ----LYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHH----HHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHH
Confidence 3455567788888888877665431 1111222333322 222223333334444433322
Q ss_pred hcCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 79 SAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 79 ~~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
.+. +--..-...+...++.++...|++++|..++.....-+...-............++++...|+|..|..++.++..
T Consensus 85 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 85 MMQ-FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHT-SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHH-ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 221 1000112345667888888899999999988775533322333345677888889999999999999999998865
Q ss_pred ccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 159 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.....+ + ...+..++...++.|...++|-.|-..|..+...
T Consensus 164 ~~~~~~----------------------~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 164 EFKKLD----------------------D--KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHTTSS----------------------C--STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcc----------------------c--chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 432211 1 1356688999999999999999999999887764
No 47
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.08 E-value=0.87 Score=36.79 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+.....|+..+...|+|++|...+.... +. ++ .-...+.....+|+..|+|..|....+++........
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~----~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~---- 76 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAI-EL----DP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR---- 76 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----CC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc----
Confidence 46667789999999999999999887633 11 11 2256777888999999999999999999865422111
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.......+-|..++..+...++|-+|..+|..+...
T Consensus 77 -------------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 -------------------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011233345666788899999999999999988764
No 48
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.07 E-value=2.6 Score=40.73 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccC------chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccC
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAM------AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDA 163 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~------~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~ 163 (422)
......++.++...|++++|...+....--..... ..-.+.+..+.....+...|++..|..+++++.....
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-- 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-- 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--
Confidence 34667899999999999999999988652111110 1112233345568889999999999999999865321
Q ss_pred CCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 164 DPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
...+.....+..++..+...++|-+|...|.++...
T Consensus 289 ------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 289 ------------------------SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp ------------------------SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ------------------------cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 112444566778888999999999999999998864
No 49
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.04 E-value=1.3 Score=39.31 Aligned_cols=151 Identities=12% Similarity=0.049 Sum_probs=92.2
Q ss_pred CChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhH-----HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhh-
Q 014576 5 GDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQL-----KQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSV- 78 (422)
Q Consensus 5 ~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~ql-----k~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~- 78 (422)
.|-+....++..++.++...|+|+...+.+.......... ..........+.-+. ..-+.+.-...++.....
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Confidence 5567778888999999999999999888877644332111 111111111111122 222333333333322211
Q ss_pred --hcCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-c--------------------------------
Q 014576 79 --SAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-A-------------------------------- 123 (422)
Q Consensus 79 --~~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~-------------------------------- 123 (422)
..+.-. ...+.+...||.++...|++++|...+....--... .
T Consensus 158 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3edt_B 158 ATRLGPDD--PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235 (283)
T ss_dssp HHHSCTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred HHhcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 101001 235667889999999999999999999876532110 0
Q ss_pred ----------CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 124 ----------MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 124 ----------~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
-........+.....+|...|++.+|..+++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02245566778889999999999999999998754
No 50
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.01 E-value=2.2 Score=39.50 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=111.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHhh-hcC
Q 014576 7 VAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSK---KRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIK-TLNSV-SAG 81 (422)
Q Consensus 7 ~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k---~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~-tL~~~-~~~ 81 (422)
...........+.++...|+|+.-.+.+..... +.+....+.....+-..-+. ..-+.+.-+..++ ++.-- ..|
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcC
Confidence 455556667777888888888888777764332 22222222222222222222 2222222223333 22211 112
Q ss_pred cchHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 82 KIYVEIERARLIKKLAKIKEEQ-GLIAEAADLMQEVAVETFGA-MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 82 ki~~E~era~l~~~La~i~e~~-g~~~eAa~iL~~l~vEt~~~-~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.. ..-+..-..+|.+|... |++++|...++.-. +.+.. -+...-.+.+.....++...|++..|-.+++++...
T Consensus 112 ~~---~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 112 QF---RRGANFKFELGEILENDLHDYAKAIDCYELAG-EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp CH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CH---HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 11 11355678899999997 99999999887643 22221 122334667888899999999999999999998764
Q ss_pred cccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 160 VFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
....+.. .. . --.++...+..+...++|-+|-.+|......
T Consensus 188 ~~~~~~~---------------------~~-~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 188 SMGNRLS---------------------QW-S-LKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp TSSCTTT---------------------GG-G-HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HhcCCcc---------------------cH-H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3211000 00 0 1124556677888899999999999998864
No 51
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.99 E-value=0.75 Score=39.14 Aligned_cols=112 Identities=8% Similarity=-0.144 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+.+...+|.++...|++++|...+....--....-+.......+.....++...|++..|..+..++....-..+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---- 100 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP---- 100 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----
Confidence 3567788999999999999999998875532222234557778888889999999999999999999876532110
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+........+...+..+...++|-+|..+|.++...
T Consensus 101 -------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 101 -------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 011233455667778888899999999999988864
No 52
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.99 E-value=3.5 Score=41.62 Aligned_cols=169 Identities=7% Similarity=-0.083 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccC
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 170 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~ 170 (422)
.....++.+|...|++++|.+.+....-.. . .-...+.....+|...|++..|..+++++.....
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 472 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLF-Q-----GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--------- 472 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-T-----TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------
Confidence 355678888888888888888887754211 1 1134555667788888999999988888754311
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-CCCCChhhHHHHHHHHHHHHHhCCC
Q 014576 171 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP-YIKEDPAQWMPVLRKICWYLVLAPH 249 (422)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~-~~~~d~~~~~~~L~~~v~~~ILa~~ 249 (422)
. +. ..+..++..+...++|-+|...|.++.... ....+|..+..++..+.....-..-
T Consensus 473 -----------------~--~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 473 -----------------Y--DP--LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp -----------------C--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred -----------------C--Ch--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 0 01 235677788888999999999999887641 1122333223333322222222221
Q ss_pred ChhhhHHhhhhh-cccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhh
Q 014576 250 DPMQSSLLNSTL-EDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE 299 (422)
Q Consensus 250 ~~~rs~ll~~~~-~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~ 299 (422)
..+=...+.+.. .+|. ....+..+...|.. .=+|++....|...+.
T Consensus 532 ~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~--~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTN--DANVHTAIALVYLH--KKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH--hCCHHHHHHHHHHHHh
Confidence 111112222222 2221 23445566666653 3456666556666554
No 53
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.99 E-value=0.82 Score=46.35 Aligned_cols=103 Identities=10% Similarity=-0.093 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
.....++.++...|++++|.+.+....--... ..++......+.....+|...|++..|..+.+++.... +
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p----- 547 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS---T----- 547 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---S-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---C-----
Confidence 45678899999999999999998876432111 22333346788888899999999999999999886532 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+ +. ..+...+..+...+++-+|...|.++.+.
T Consensus 548 ------------------~--~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 ------------------N--DA--NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp ------------------C--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------C--Ch--HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 0 01 34566778888899999999999998875
No 54
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.90 E-value=2.8 Score=40.12 Aligned_cols=118 Identities=6% Similarity=-0.151 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
..+.+...||.++...|++++|.+.+....--....-+.......+.....+|...|++.+|..+.+++....-..
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---- 255 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---- 255 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh----
Confidence 4677888999999999999999998876442221222344667788888999999999999999999996632110
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCCh
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDP 230 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~ 230 (422)
..... ..-+...+..+...++|-+|..+|.++........++
T Consensus 256 --------------------~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 297 (378)
T 3q15_A 256 --------------------VPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK 297 (378)
T ss_dssp --------------------CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred --------------------CChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 00112 3455667788899999999999999999865443343
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.89 E-value=1.3 Score=38.74 Aligned_cols=97 Identities=7% Similarity=-0.088 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccC
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 170 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~ 170 (422)
.+...+|.++...|++++|...+....--. .. -.+.+.....++...|++..|..+++++......
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------- 157 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-ME-----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-------- 157 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CC-----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--------
Confidence 455667788888888888888777654211 11 1335566677778888888888877777543110
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 171 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+. ..+...+..+...++|-+|...|.++...
T Consensus 158 --------------------~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 158 --------------------DT--EARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp --------------------CH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --------------------cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 00 13345566677777787777777777653
No 56
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.77 E-value=2.5 Score=38.92 Aligned_cols=168 Identities=11% Similarity=0.064 Sum_probs=101.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHH
Q 014576 18 LQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLA 97 (422)
Q Consensus 18 ~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era~l~~~La 97 (422)
+..+...|+++...+.+....+.....-.+.. ..+.-+ -...+.+.-...++......+.. ......+|
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la 195 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRE---LRAECF-IKEGEPRKAISDLKAASKLKSDN-------TEAFYKIS 195 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---HHHHHH-HHTTCHHHHHHHHHHHHTTCSCC-------HHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHH---HHHHHH-HHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHH
Confidence 56677777777777666654432221111110 000011 11222232233333333333332 34667899
Q ss_pred HHHHHhccHHHHHHHHHHHHHHhhccC-------chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccC
Q 014576 98 KIKEEQGLIAEAADLMQEVAVETFGAM-------AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 170 (422)
Q Consensus 98 ~i~e~~g~~~eAa~iL~~l~vEt~~~~-------~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~ 170 (422)
.++...|++++|...+....- ..... ..-.++...+....++...|++..|...++++.....
T Consensus 196 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------- 265 (359)
T 3ieg_A 196 TLYYQLGDHELSLSEVRECLK-LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--------- 265 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHcCCHHHHHHHHHHHHh-hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------
Confidence 999999999999999887652 21111 1112333455668889999999999999999865421
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 171 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.........+...+..+...++|-+|...|..+...
T Consensus 266 -----------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 266 -----------------SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp -----------------SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 112444455667788899999999999999999875
No 57
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.74 E-value=0.2 Score=46.74 Aligned_cols=110 Identities=9% Similarity=-0.002 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
...-...+..+...|++++|.+.+....-.....-.......++.....++...+++..|..+++++........+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 150 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---- 150 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc----
Confidence 3344567888999999999999887644221111122345566666778889999999999999998654322110
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.......+...+..|...++|-+|-.+|.++...
T Consensus 151 --------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~ 184 (293)
T 2qfc_A 151 --------------------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1123456777889999999999999999998853
No 58
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.66 E-value=0.97 Score=42.69 Aligned_cols=97 Identities=10% Similarity=-0.047 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccC
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 170 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~ 170 (422)
.+...|+.++...|++++|...+....--.. .-...+.....++...|++..|..+++++.... |
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p----- 278 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRP------EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----P----- 278 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C-----
Confidence 3567889999999999999998887542211 114467777888999999999999999886531 1
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 171 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.. ...+...+..+...++|-+|..+|..+...
T Consensus 279 -----------------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 279 -----------------GF----IRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp -----------------TC----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -----------------Cc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 00 123456677888889999999999988864
No 59
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.64 E-value=0.46 Score=36.12 Aligned_cols=99 Identities=14% Similarity=-0.002 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+..-..+|..+...|++++|...+....-... .-...+.....++...+++..|....+++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------- 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------- 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------
Confidence 345667889999999999999999987553211 1245777788899999999999999999865321
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. .. ..+...+..+...++|-+|...|..+...
T Consensus 70 -------------------~--~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 70 -------------------D--WG--KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp -------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -------------------c--cH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 0 01 23445567788899999999999998874
No 60
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.9 Score=44.75 Aligned_cols=103 Identities=12% Similarity=-0.013 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHhccccccCCCccc
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLD---RQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~---~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
....+|.++...|++++|...+....--....-+.......+.....++.. .|++..|..+++++.... +
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~---- 446 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---P---- 446 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---T----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---c----
Confidence 557789999999999999998887543221221111224467778888899 999999999999886532 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
... ..+...+..+...++|-+|...|..+....
T Consensus 447 -------------------~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 447 -------------------RSE----QAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp -------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------------------ccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 001 234566788888999999999999988753
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.57 E-value=1.4 Score=37.09 Aligned_cols=132 Identities=8% Similarity=-0.077 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHH
Q 014576 10 TKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIER 89 (422)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~er 89 (422)
...+...++.++...|+++...+.+..........-.+...+-. ......+.+.-...+.......+..
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~a~~~~~~~------- 106 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS----ANFMIDEKQAAIDALQRAIALNTVY------- 106 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHhCccc-------
Confidence 34556667777777777777766665543222222111111000 0111222233333333333333332
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
......+|.++...|++++|.+.++...-- ++ .-.+.+.....++...|++.+|....+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----KP-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----cc-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345678999999999999999988875421 11 2245677788999999999999999999854
No 62
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.56 E-value=2.2 Score=38.97 Aligned_cols=166 Identities=8% Similarity=-0.048 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHH
Q 014576 11 KKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERA 90 (422)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era 90 (422)
..++...+..++..|+|+...+.+....+.....-.+....... . . ...+.+.-..+++.+....+.. .
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~-~--~-~~~~~~~A~~~~~~~~~~~~~~-------~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT-L--V-ELNKANELFYLSHKLVDLYPSN-------P 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHH-H--H-HHTCHHHHHHHHHHHHHHCTTS-------T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHH-H--H-HhhhHHHHHHHHHHHHHhCcCC-------H
Confidence 34566778888888999988877765443222111111111110 0 0 1112222233333333333321 3
Q ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 91 RLIKKLAKIKEEQG-LIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 91 ~l~~~La~i~e~~g-~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
.....++.++...| ++++|...++...-- ++ .-.+.+.....++...|++..|...++++.......
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------ 158 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTL-----EK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC------ 158 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-----CT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc------
Confidence 45677899999999 999999988775421 11 123456777888999999999999999886542110
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.+ .+...+..+...++|-+|..+|..+...
T Consensus 159 --------------------~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 159 --------------------HL----PMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp --------------------SH----HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------------------HH----HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 01 1233667788899999999999998874
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.44 E-value=3.6 Score=39.29 Aligned_cols=113 Identities=6% Similarity=-0.155 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
..+.+-..||.+|...|++++|...+....--....-+.......+.....+|...|++.+|..+.+++....-....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-- 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-- 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--
Confidence 357788899999999999999999887754222122334566778888899999999999999999999764321100
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
. .....-+...+..+...++|-+|-.+|.++....
T Consensus 260 --------------------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 260 --------------------L--PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp --------------------G--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------------c--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 0 0113445667788889999999999999988753
No 64
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.44 E-value=2.3 Score=39.70 Aligned_cols=147 Identities=20% Similarity=0.132 Sum_probs=86.6
Q ss_pred ChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHhh-hc
Q 014576 6 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLS---KKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIK-TLNSV-SA 80 (422)
Q Consensus 6 D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~---k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~-tL~~~-~~ 80 (422)
|......++..+..++...|+|+.-.+.+..-. ...|....+.....+-..-+. . .+.+.-+..++ .+.-. ..
T Consensus 71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhC
Confidence 444455566667777777777766665554322 222333222222222222222 2 33333333444 22211 11
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Q 014576 81 GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 157 (422)
Q Consensus 81 ~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~ 157 (422)
|.. ...+.+...+|.+|...|++++|...++...--....-........++....+++..+|+..|..+++++.
T Consensus 149 ~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 149 ERL---RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 221 12466788999999999999999998887543221222233556678888889999999999999999997
No 65
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.32 E-value=2.6 Score=37.15 Aligned_cols=167 Identities=11% Similarity=0.008 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHH
Q 014576 9 GTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIE 88 (422)
Q Consensus 9 s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~e 88 (422)
.+..+...++..+...|+++.-...+....+.-...-.+.. .-...+. ...+.+.-+..++......+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~---~lg~~~~-~~g~~~~A~~~~~~al~~~P~~------ 72 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALY---WLARTQL-KLGLVNPALENGKTLVARTPRY------ 72 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH---HHHHHHH-HTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHH-HcCCHHHHHHHHHHHHHhCCCc------
Confidence 34456677788888889988877776654432211111111 1111111 1122222233344333344442
Q ss_pred HHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Q 014576 89 RARLIKKLAKIKEEQ-----------GLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 157 (422)
Q Consensus 89 ra~l~~~La~i~e~~-----------g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~ 157 (422)
......|+.++... |++++|...+....-- ++ .-.+.+.....++...|++..|...++++.
T Consensus 73 -~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 73 -LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NP-RYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp -HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----Cc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34557788888888 9999999988775421 11 123566677888999999999999999986
Q ss_pred cccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 158 PRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... .. .+ .+...+..+...++|-+|...|..+...
T Consensus 146 ~~~-~~--------------------------~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 146 ALE-DT--------------------------PE----IRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHC-CC--------------------------HH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcc-cc--------------------------hH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 643 11 11 2345667888899999999999998874
No 66
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.32 E-value=0.95 Score=41.42 Aligned_cols=98 Identities=10% Similarity=-0.082 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
..+...+|.++...|++++|...+....-... .-...+.....++...|++..|..+.+++.....
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------- 237 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRP------DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-------- 237 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------
Confidence 45678899999999999999999987542211 1135677788999999999999999998855321
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+..+...++|-+|..+|..+...
T Consensus 238 ------------------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 238 ------------------GYV----RVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp ------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------CCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 001 13445677888899999999999988764
No 67
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.19 E-value=1 Score=36.39 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCC
Q 014576 85 VEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDAD 164 (422)
Q Consensus 85 ~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~ 164 (422)
+.-+.+..-..++..+...|+|++|.+.+....- . ++ .-.+.+......+...|++..|....+++...-
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~-~----~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---- 77 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK-R----DP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---- 77 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h----CC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----
Confidence 3445667778899999999999999998876431 1 11 225677788899999999999999999986531
Q ss_pred CccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 165 PSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
| . .. ..+...+..+...++|-+|..+|..+...
T Consensus 78 p----------------------~--~~--~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 78 S----------------------K--FI--KGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp T----------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h----------------------h--hh--HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 0 01 23456678889999999999999999875
No 68
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=94.17 E-value=3.3 Score=38.60 Aligned_cols=98 Identities=7% Similarity=-0.105 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
..+...+|.++...|++++|...++...--. . .-...+.....++...|++..|..+++++.... +
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~----- 282 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ---P----- 282 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-----
Confidence 3455678888888888888888877644211 1 113466667788888888888888888875431 0
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. .. ..+...+..+...++|-+|..+|..+...
T Consensus 283 ------------------~--~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 283 ------------------G--YI--RSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp ------------------T--CH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------------C--cH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0 00 23455667777888888888888877763
No 69
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.13 E-value=0.9 Score=45.20 Aligned_cols=104 Identities=9% Similarity=-0.078 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDR----------QDYVRAQILSRKISPRV 160 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~----------~D~~~a~~~~~K~~~~~ 160 (422)
.+...+|.++...|++++|...+.....-.....+....+..++....++... |++..|..+++++....
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 35567899999999999999888875432222222223333344555666666 99999999999886532
Q ss_pred ccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 161 FDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
. ... ..+...+..+...++|-+|...|..+....
T Consensus 459 p--------------------------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 459 P--------------------------RSE----QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp T--------------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C--------------------------CCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 001 235567788889999999999999998753
No 70
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.09 E-value=0.82 Score=37.38 Aligned_cols=100 Identities=11% Similarity=-0.029 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
+.+..-..+|..+...|++++|...+....-... .-.+.+.....++...++|..|..+++++......
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 3567778899999999999999999887543211 12567778888999999999999999998654210
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.. ..+...+..+...++|-+|..+|..+...
T Consensus 80 ---------------------~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 80 ---------------------YI----KGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp ---------------------CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------cH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 01 23456678888899999999999998874
No 71
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.88 E-value=0.84 Score=38.12 Aligned_cols=100 Identities=10% Similarity=-0.013 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+..-..+|..+...|+|++|...+....--. + .-...+.....+++..++|..|...++++.... |
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p--- 76 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----P-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD----P--- 76 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C---
Confidence 46677889999999999999999888754211 1 125678888899999999999999999986532 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
. .. ..+...+..+...++|-+|..+|..+....
T Consensus 77 -------------------~--~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 77 -------------------K--YS--KAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------C--CH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 0 11 344566788889999999999999998753
No 72
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.82 E-value=0.96 Score=35.48 Aligned_cols=101 Identities=8% Similarity=-0.128 Sum_probs=72.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCC
Q 014576 94 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 173 (422)
Q Consensus 94 ~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~ 173 (422)
..+|..+...|++++|...+..+.-... +.....+.++....++...|++..|...+.++.......
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------- 72 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP---NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------- 72 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS---SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC----------
Confidence 5678899999999999999998653221 112334677778899999999999999999986542110
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 174 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 174 ~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
.... ..+...+..+...++|-+|...|..+....
T Consensus 73 -------------~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 73 -------------DKAA----GGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -------------TTHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -------------cccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 0001 223455677888999999999999988753
No 73
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.78 E-value=1.1 Score=35.38 Aligned_cols=99 Identities=11% Similarity=-0.043 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.+..-..+|..+...|++++|...+....--. + .-...+......+...|++..|....+++.... |
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p--- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----P-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----P--- 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C---
Confidence 35566788999999999999999888744211 1 124677888899999999999999999986532 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. .. ..+...+..+...++|-+|..+|..+...
T Consensus 70 -------------------~--~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 70 -------------------N--FV--RAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp -------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------C--cH--HHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 0 11 23455678888899999999999988864
No 74
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.71 E-value=5.2 Score=38.52 Aligned_cols=172 Identities=9% Similarity=-0.013 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
..+...++.+|...|++++|...+....-... .-...+.....++...|++..|...++++...... .
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~--- 244 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKN------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---H--- 244 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C---
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---h---
Confidence 34567788888888888888888877542211 12456777788899999999999999988643211 0
Q ss_pred CCCCCCCcccccCCCCccchHHHHH--------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHH
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKR--------IYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKIC 241 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlkl--------k~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~v 241 (422)
..... .-....+..+...++|-+|...|..+...... ++..+..++....
T Consensus 245 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 245 --------------------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERIC 302 (450)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHH
Confidence 01110 01122367888899999999999999874321 3322222332222
Q ss_pred HHHHhCCCChhhhHHhhhh-hcccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhh
Q 014576 242 WYLVLAPHDPMQSSLLNST-LEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE 299 (422)
Q Consensus 242 ~~~ILa~~~~~rs~ll~~~-~~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~ 299 (422)
.+..-..-..+=-..+.+. ..+|. ....+..+..++.. .=+|+.....|...+.
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQMEPD--NVNALKDRAEAYLI--EEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHH--hcCHHHHHHHHHHHHH
Confidence 2221111111111222222 22222 23445566666653 4456666566666665
No 75
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=93.61 E-value=0.68 Score=36.17 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
...-..+|..+...|++++|...+....-. ++ .-.+.+.....++...+++..|..+++++......
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------- 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------- 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------
Confidence 345577899999999999999999875421 11 12567788889999999999999999998653210
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+. ..+...+..+...++|-+|..+|..+...
T Consensus 83 ---------------------~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 83 ---------------------FI--KGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ---------------------CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------ch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 01 23456667888899999999999998874
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.60 E-value=2.4 Score=34.70 Aligned_cols=134 Identities=10% Similarity=-0.039 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHH
Q 014576 9 GTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIE 88 (422)
Q Consensus 9 s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~e 88 (422)
....+...++..+...|+++...+.+....+.....-.+...+ +..+. ...+.+.-...++......++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---a~~~~-~~~~~~~A~~~~~~~~~~~~~~------ 109 (186)
T 3as5_A 40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL---GLTYV-QVQKYDLAVPLLIKVAEANPIN------ 109 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---HHHHH-HHTCHHHHHHHHHHHHHHCTTC------
T ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHH-HhcCHHHHHHHHHHHHhcCcHh------
Confidence 3456778888899999999988887776543322111111111 11111 1122222233444333333332
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
......+|.++...|++++|...+....-... .....+.....++...|++.+|..+.+++...
T Consensus 110 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 -FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP------NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34667899999999999999999988653221 11467777889999999999999999988654
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=93.46 E-value=3.2 Score=36.62 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
.....+|.+|...|++.+|...++.+.-. +.. ...-.+.+......+...|++..|....+++..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~--~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRD-YPD--TQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STT--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHH-CcC--CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 34467899999999999999999986532 211 112336777788999999999999999998865
No 78
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.45 E-value=1.1 Score=35.64 Aligned_cols=101 Identities=8% Similarity=-0.031 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
+.....+|..+...|++++|...+....-. .-+.......+.....++...+++.+|....+++.... |
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~---- 96 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD----G---- 96 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----S----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----c----
Confidence 456678999999999999999999875421 11233457888888999999999999999999886531 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. +. ..+...+..+...++|-+|..+|..+...
T Consensus 97 ------------------~--~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 ------------------G--DV--KALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ------------------C--CH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------------c--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 11 23445667788899999999999998874
No 79
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.34 E-value=2.1 Score=32.83 Aligned_cols=99 Identities=13% Similarity=0.008 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
....-..+|..+...|++++|...+....-.... -...+.....++...+++..|..++.++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------- 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP------- 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------
Confidence 4567788999999999999999998875532111 145677788899999999999999999865321
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. +. ..+...+..+...++|-+|..+|..+...
T Consensus 78 -------------------~--~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 78 -------------------A--YS--KAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------c--CH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 0 01 23456667888999999999999998875
No 80
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.26 E-value=1.3 Score=35.16 Aligned_cols=98 Identities=12% Similarity=-0.015 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
+..-..+|..+...|++++|...+....--. . .-...+.....++...+++..|...++++.... +
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p----- 74 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-P-----LVAVYYTNRALCYLKMQQPEQALADCRRALELD---G----- 74 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-c-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---c-----
Confidence 4456789999999999999999888754221 1 124677888899999999999999999986532 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. .. ..+...+..+...++|-+|-.+|..+...
T Consensus 75 ------------------~--~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 75 ------------------Q--SV--KAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp ------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------h--hH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0 01 23456678888899999999999888764
No 81
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.12 E-value=2.3 Score=35.56 Aligned_cols=99 Identities=6% Similarity=-0.021 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH-HhccCCH--HHHHHHHHHhccccccCCCc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRL-CLDRQDY--VRAQILSRKISPRVFDADPS 166 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL-~l~~~D~--~~a~~~~~K~~~~~~~~~~~ 166 (422)
......+|.++...|++++|...+....--... -...+.....+ +...+++ ..|..++.++.....
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p----- 112 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDS----- 112 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-----
Confidence 346688999999999999999988875422111 14566667777 7888998 999999998865321
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 167 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
. +. ..+...+..+...++|-+|..+|..+....
T Consensus 113 ---------------------~--~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 113 ---------------------N--EI--TALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp ---------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ---------------------C--cH--HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 0 01 234456678888999999999999988754
No 82
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.06 E-value=1.1 Score=37.33 Aligned_cols=105 Identities=11% Similarity=-0.044 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-----cC-c------hHHHHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-----AM-A------KTEKIAFILEQVRLCLDRQDYVRAQILSRKI 156 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-----~~-~------~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~ 156 (422)
.+..-..++..+...|+|++|...+....--... .- + .......+......|+..|+|..|.....++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4566688899999999999999887764321100 00 0 3456678888899999999999999999998
Q ss_pred ccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 157 SPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
...- |. .. +.|...+..+...++|-+|..+|..+...
T Consensus 90 l~~~----p~------------------------~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE----ET------------------------NE--KALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS----TT------------------------CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC----Cc------------------------ch--HHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6531 11 11 23445668888899999999999988874
No 83
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.01 E-value=3.8 Score=34.86 Aligned_cols=168 Identities=8% Similarity=-0.094 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHhhhcCcchHHHHH
Q 014576 11 KKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQT-PDLDTRIELIKTLNSVSAGKIYVEIER 89 (422)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~-~~~~~~~~li~tL~~~~~~ki~~E~er 89 (422)
..+...++..+...|+++...+.+............+...+ +.-+ ... -+.+.-...++.... .+. . ...
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l---~~~~-~~~~~~~~~A~~~~~~~~~-~~~--~--~~~ 112 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY---GWFL-CGRLNRPAESMAYFDKALA-DPT--Y--PTP 112 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---HHHH-HTTTCCHHHHHHHHHHHHT-STT--C--SCH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH---HHHH-HHhcCcHHHHHHHHHHHHc-CcC--C--cch
Confidence 34556667777778888877776655432211111111111 1111 122 333333334442222 101 1 013
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
..+...+|.++...|++++|...+....-.. . .....+...+.++...|++..|..+.+++...... .
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~---- 180 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-P-----QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV--L---- 180 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--C----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----
Confidence 4567889999999999999999988754221 1 12456778889999999999999999998653210 0
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 222 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~ 222 (422)
..+ .+...+.++...+++-+|..++..+..
T Consensus 181 -------------------~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 181 -------------------QAD----DLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp -------------------CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------CHH----HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 011 234556777778888777777666654
No 84
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.97 E-value=1.7 Score=33.08 Aligned_cols=98 Identities=17% Similarity=0.065 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
......+|..+...|++++|.+.+........ .-...+.....++...+++..|..+.+++.... +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~----- 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P----- 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---C-----
Confidence 34567889999999999999999988653211 123567778889999999999999999886531 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+..+...++|-+|...|.++...
T Consensus 75 ------------------~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 75 ------------------NNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------ccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 001 12345567788899999999999988874
No 85
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.91 E-value=2.9 Score=40.96 Aligned_cols=168 Identities=10% Similarity=0.044 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHH
Q 014576 8 AGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEI 87 (422)
Q Consensus 8 ~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~ 87 (422)
+....+...++..+...|+|+...+.+....+.... .......+.-+.. ..+.+.-...++......++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~----- 303 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR----VNSYIYMALIMAD-RNDSTEYYNYFDKALKLDSNN----- 303 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHT-SSCCTTGGGHHHHHHTTCTTC-----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc----HHHHHHHHHHHHH-CCCHHHHHHHHHHHhhcCcCC-----
Confidence 455667777888888888888888777665433333 1111111111211 111111122333222222221
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
..+...+|.++...|++++|...+....-- ... -...+.....++...|++..|..+++++.......
T Consensus 304 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 371 (514)
T 2gw1_A 304 --SSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPE-----NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA---- 371 (514)
T ss_dssp --THHHHHHHHHHHHTTCTTHHHHHHHHHHHT-CSS-----CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC----
T ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-Chh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC----
Confidence 235678999999999999999999875421 111 13467778899999999999999999986532110
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. ..+...+..+...++|-+|..+|..+...
T Consensus 372 ----------------------~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 372 ----------------------P----EVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp ----------------------S----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0 23456678888899999999999988764
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.72 E-value=2.8 Score=37.58 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcC-------CCCHHHHHHHHHHHHhhhcC
Q 014576 9 GTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQ-------TPDLDTRIELIKTLNSVSAG 81 (422)
Q Consensus 9 s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~-------~~~~~~~~~li~tL~~~~~~ 81 (422)
....+...++..++..|+|+.-.+.+....+....-.............+... ..+.+.-+..++.+....++
T Consensus 50 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 50 WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 34778889999999999999998888876654221100111111111112110 00111122233322233333
Q ss_pred cchHH----------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhcc--------
Q 014576 82 KIYVE----------IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDR-------- 143 (422)
Q Consensus 82 ki~~E----------~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~-------- 143 (422)
..+.. ...+.....+|.+|...|++++|...++.+.-....+ ....+.++...+.|...
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~~g~~~~~~~ 206 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT---PWADDALVGAMRAYIAYAEQSVRAR 206 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHhcccchhhc
Confidence 22221 1112234789999999999999999999865322111 12345566667777655
Q ss_pred --CCHHHHHHHHHHhcccc
Q 014576 144 --QDYVRAQILSRKISPRV 160 (422)
Q Consensus 144 --~D~~~a~~~~~K~~~~~ 160 (422)
+++.+|...++++....
T Consensus 207 ~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 207 QPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHC
Confidence 89999999999987643
No 87
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.63 E-value=3.4 Score=34.12 Aligned_cols=99 Identities=12% Similarity=-0.042 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.......+|..+...|++++|...+.....-. + .-.+.+.....++...|+|..|...++++.......
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----- 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----H-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE----- 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----
Confidence 34566789999999999999999988754221 1 124556667888999999999999999986532110
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. ..+...+..+...++|-+|-.+|..+...
T Consensus 89 ---------------------~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 89 ---------------------P----RFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp ---------------------T----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------c----hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 12345578888999999999999988764
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.54 E-value=0.91 Score=37.78 Aligned_cols=98 Identities=9% Similarity=-0.122 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.......||.+|...|++++|.+.+....-- ++ .-.+.+.....++...|++..|...++++.... |
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p--- 96 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELN----P--- 96 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC----C---
Confidence 4455578999999999999999988874421 11 224567778889999999999999999986532 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHhh
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYK-AIYE 222 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~-e~~~ 222 (422)
+..+ .+...+..+...++|-+|+++|. .+..
T Consensus 97 -------------------~~~~----~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 97 -------------------TQKD----LVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp -------------------TCHH----HHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred -------------------CCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1112 23455677778888888888874 3444
No 89
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.53 E-value=2.5 Score=34.28 Aligned_cols=99 Identities=8% Similarity=-0.086 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.......+|..+...|++++|...+.....-. + .-..++.....++...+++..|...++++......
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------ 84 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-----H-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------ 84 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-----C-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------
Confidence 34556788999999999999999998755221 1 12456677788899999999999999998654211
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.. ..+...+..+...++|-+|..+|..+...
T Consensus 85 --------------------~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 85 --------------------EP----RFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp --------------------CT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------Cc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01 12345667888899999999999988764
No 90
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=92.46 E-value=1.4 Score=37.91 Aligned_cols=105 Identities=14% Similarity=-0.081 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-c------C---chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-A------M---AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~------~---~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
.+..-..+|..+...|+|++|...+....--... . . ....+...+.....+++..++|..|..+++++..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4666788999999999999999998875421111 1 0 0112357888889999999999999999999865
Q ss_pred ccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 159 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.. | . .. +.+...+..+...++|-+|..+|..+...
T Consensus 117 ~~----p----------------------~--~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 117 ID----K----------------------N--NV--KALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HS----T----------------------T--CH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hC----c----------------------c--cH--HHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 31 1 0 11 23455667788899999999999988864
No 91
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=92.21 E-value=1.4 Score=38.90 Aligned_cols=95 Identities=12% Similarity=-0.065 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
......++.++...|++++|...++...-- + .-.+.+.....++...|++..|...++++.... |
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P----- 182 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALAL-----E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA---P----- 182 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---T-----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-----
Confidence 345678999999999999999988875421 1 224567778889999999999999999986532 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIY 221 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~ 221 (422)
+..+ .+...+..+...++|-+|..+|..+-
T Consensus 183 ------------------~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 183 ------------------KDLD----LRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ------------------TCHH----HHHHHHHHHTC---------------
T ss_pred ------------------CChH----HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 1112 23455677888899988888876553
No 92
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.19 E-value=7.3 Score=36.17 Aligned_cols=95 Identities=8% Similarity=-0.008 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHHH
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERAR 91 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era~ 91 (422)
..+..++..+...|+|+...+.+....+.....-.+...+ ...+. ..-+.+.-...++......++ ...
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~-~~g~~~~A~~~~~~al~~~~~-------~~~ 133 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL---GTTQA-ENEQELLAISALRRCLELKPD-------NQT 133 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH---HHHHH-HTTCHHHHHHHHHHHHHHCTT-------CHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHH-HCcCHHHHHHHHHHHHhcCCC-------CHH
Confidence 3455677788888888888777765543221111111111 11111 111222223333322222222 133
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVA 117 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~ 117 (422)
....+|.++...|++++|...+....
T Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 134 ALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55677788888888888887777654
No 93
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=92.06 E-value=5.6 Score=34.57 Aligned_cols=101 Identities=12% Similarity=0.033 Sum_probs=76.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCC
Q 014576 94 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 173 (422)
Q Consensus 94 ~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~ 173 (422)
..+|.++...|++++|.+.+....-. + ..-...+.....++...|++.+|...++++.......
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------- 109 (228)
T 4i17_A 46 YNCGVCADNIKKYKEAADYFDIAIKK-----N-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN---------- 109 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT-----T-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------
T ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHh-----C-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----------
Confidence 44899999999999999988875421 1 1245678888999999999999999999986643110
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 174 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 174 ~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+.........+...+..+...++|-+|-.+|..+...
T Consensus 110 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 110 -------------ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred -------------HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 0112233356777888999999999999999999874
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.04 E-value=0.89 Score=43.85 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCC
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKP 172 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~ 172 (422)
...+|.+++..|++++|.+.+...- +.-+...-++.++..+++++..|+...|...+++.....-+ ..
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i----~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d--~~------ 170 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGI----DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED--TV------ 170 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH----TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH--HH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh----ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cc------
Confidence 3689999999999999999998731 11112478899999999999999999999999887542100 00
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
| + .....+..-+..+.+....++|-+|+..|.++.+.+
T Consensus 171 -~------------~-~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 171 -S------------G-DNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp -H------------H-HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred -c------------c-chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 1 0 012322222233344444449999999999998754
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.88 E-value=3.3 Score=31.59 Aligned_cols=129 Identities=16% Similarity=0.060 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHHHH
Q 014576 13 AVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARL 92 (422)
Q Consensus 13 ~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era~l 92 (422)
+...++..+...|+++...+.+....+.....-.+...+. ..+. ...+.+.-...++......++. ...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a---~~~~-~~~~~~~A~~~~~~~~~~~~~~-------~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG---NAYY-KQGDYDEAIEYYQKALELDPRS-------AEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH---HHHH-HHTCHHHHHHHHHHHHHHCTTC-------HHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHH---HHHH-HhcCHHHHHHHHHHHHHHCCCc-------hHH
Confidence 4556778888889998887777654432211111111111 1111 1122333333444333333332 234
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
...+|.++...|++++|.+.+....-... .....+....+++...|++.+|..+.+++..
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 56789999999999999999987553211 1135667778999999999999999888744
No 96
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=91.85 E-value=8 Score=35.88 Aligned_cols=166 Identities=8% Similarity=0.041 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHH
Q 014576 9 GTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKR--GQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVE 86 (422)
Q Consensus 9 s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~--~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E 86 (422)
....++..+++.+...++++..++.+..+.... ..- ... .+....-+.. .-+.+ +.++.+.. ++ .
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~--~~~-~~~la~~~~~-~g~~~---~Al~~l~~--~~--~-- 129 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN--TTF-LLMAASIYFY-DQNPD---AALRTLHQ--GD--S-- 129 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC--HHH-HHHHHHHHHH-TTCHH---HHHHHHTT--CC--S--
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC--HHH-HHHHHHHHHH-CCCHH---HHHHHHhC--CC--C--
Confidence 355677777787777788887777776544221 000 000 0111111111 11111 12233332 11 2
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCc
Q 014576 87 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 166 (422)
Q Consensus 87 ~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~ 166 (422)
..+...++.++...|++++|.+.++.+.-.. ++.....+..--+.++...+++..|...++++.... +
T Consensus 130 ---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---p-- 197 (291)
T 3mkr_A 130 ---LECMAMTVQILLKLDRLDLARKELKKMQDQD----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---S-- 197 (291)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---C--
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---C--
Confidence 2366788999999999999999999865321 222222222223355667789999999999987642 1
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 167 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
. +. ..+..++..+...++|-+|-..|.++....
T Consensus 198 ---------------------~--~~--~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 198 ---------------------P--TL--LLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp ---------------------C--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------------------C--cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0 11 245567788999999999999999999853
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.79 E-value=1.9 Score=33.10 Aligned_cols=95 Identities=17% Similarity=0.056 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCC
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKP 172 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~ 172 (422)
...+|..+...|++++|...+....-... .-...+...+.++...+++..|..+..++.... +
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~-------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P-------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T--------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---C--------
Confidence 45788999999999999999987643211 113456667888999999999999999885531 1
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+..+...++|-+|.+.|.++...
T Consensus 67 ---------------~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 67 ---------------RSA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp ---------------TCH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---------------Cch----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 001 12345567778888999998888887764
No 98
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.79 E-value=1.3 Score=33.27 Aligned_cols=97 Identities=10% Similarity=-0.039 Sum_probs=70.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCC
Q 014576 94 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 173 (422)
Q Consensus 94 ~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~ 173 (422)
..+|.++...|++++|...+....--. . .-...+.....++...+++..|...++++...... .
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~------- 73 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-P-----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED---E------- 73 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-C-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC---T-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-c-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---c-------
Confidence 467889999999999999888754221 1 11346777888999999999999999998653210 0
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhcC
Q 014576 174 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN-NDYLEICRCYKAIYEIP 224 (422)
Q Consensus 174 ~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~-~~y~ea~~~y~e~~~~~ 224 (422)
. .. ..+...+..+... ++|-+|..+|..+....
T Consensus 74 --------------~--~~--~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 74 --------------Y--NK--DVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp --------------T--CH--HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred --------------c--hH--HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 0 01 2345666788888 99999999999988753
No 99
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=91.60 E-value=3.9 Score=36.30 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCC
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKP 172 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~ 172 (422)
...+|..+...|++++|...+....-.... -.+.+.....++...|++..|..+++++.... ..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-------- 70 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NAT-------- 70 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTT--------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-Cch--------
Confidence 356788888899999999888876422111 12255666778888899999998888886521 100
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+.....+...+..+...++|-+|-.+|..+...
T Consensus 71 ------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 71 ------------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp ------------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 111123456667788888898888888888874
No 100
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=91.51 E-value=11 Score=36.97 Aligned_cols=164 Identities=5% Similarity=-0.009 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHHH
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERAR 91 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era~ 91 (422)
.++..+...+...|+|+...+.+....+.... ..........+. ...+.+.-...++......+. ...
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~-------~~~ 311 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT----PNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPE-------YPP 311 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTT-------CHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----chHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCC-------CHH
Confidence 34556667777778887777766654433222 111111111122 222233333444433333333 234
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCC
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 171 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~ 171 (422)
+...+|.++...|++++|...+....--... -...+.....++...|++..|..+++++.......
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------- 377 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-------- 377 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------
Confidence 6688999999999999999998876532111 12556777889999999999999999986542110
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 172 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.+ .+...+..+...++|-+|..+|..+...
T Consensus 378 ------------------~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 378 ------------------PE----VPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp ------------------TH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------hH----HHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 11 2345578888899999999999998764
No 101
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=91.43 E-value=2.1 Score=41.70 Aligned_cols=105 Identities=13% Similarity=-0.022 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc----------CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA----------MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~----------~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
.+..-..+|..+...|++++|...+....--.... -........++....+++..++|.+|..+++++..
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45667889999999999999999887654311000 02345678888999999999999999999999965
Q ss_pred ccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 159 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.. | . .. +.+...+..+...++|-+|..+|..+...
T Consensus 302 ~~----p----------------------~--~~--~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 302 ID----P----------------------S--NT--KALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TC----T----------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC----c----------------------h--hH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 31 1 0 11 23445567788899999999999988874
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.24 E-value=7.2 Score=34.21 Aligned_cols=182 Identities=10% Similarity=0.071 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHH
Q 014576 11 KKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERA 90 (422)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era 90 (422)
...+...+..++..|+|+...+.+..+.+.......+..........+. ...+.+.-+..++.+.+..++.-...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~---- 78 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNID---- 78 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHH----
Confidence 3456677788889999999888888766432211100111111111122 12222333334443333334332110
Q ss_pred HHHHHH------------------HHHHHHhccHHHHHHHHHHHHHHhhccC-ch--HHH--------HHHHHHHHHHHh
Q 014576 91 RLIKKL------------------AKIKEEQGLIAEAADLMQEVAVETFGAM-AK--TEK--------IAFILEQVRLCL 141 (422)
Q Consensus 91 ~l~~~L------------------a~i~e~~g~~~eAa~iL~~l~vEt~~~~-~~--~eK--------~e~~Le~~rL~l 141 (422)
.....+ +..+...|++++|...++.+.-.-..+- .. ..+ .+..+...+++.
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223 3444457899999999998764322221 11 111 122356678899
Q ss_pred ccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Q 014576 142 DRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIY 221 (422)
Q Consensus 142 ~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~ 221 (422)
..|++..|...++++....... ..--..+...+..+...+++-+|...|..+.
T Consensus 159 ~~~~~~~A~~~~~~~l~~~p~~---------------------------~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDYPDT---------------------------QATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTS---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHCcCC---------------------------CccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999999999986643110 1111234456688889999999999998877
Q ss_pred hcC
Q 014576 222 EIP 224 (422)
Q Consensus 222 ~~~ 224 (422)
..+
T Consensus 212 ~~~ 214 (225)
T 2yhc_A 212 ANS 214 (225)
T ss_dssp HCC
T ss_pred hhC
Confidence 654
No 103
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=90.60 E-value=0.41 Score=35.79 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=43.5
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEcc
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 380 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~ 380 (422)
-=+-+.|+.||..||++.+++-.-|-.+..+|+|.|-||-....|.-.+
T Consensus 18 ~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 3456899999999999999999999999999999999999877776543
No 104
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=90.31 E-value=6.4 Score=42.23 Aligned_cols=165 Identities=19% Similarity=0.105 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
+..-..||.+|.+.|++++|...++... +.. + .-.+.+.....++...|++..|...++++.... +
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~----P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P----- 74 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKAL-EVF----P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---P----- 74 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC----S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-----
Confidence 4455788999999999999998887643 111 1 123456667788889999999999999886531 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHhCCC
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPH 249 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ILa~~ 249 (422)
+.. ..|...+..+...++|-+|-.+|..+.... |...........+|.-+..+
T Consensus 75 ------------------~~~----~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-----P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 75 ------------------TFA----DAYSNMGNTLKEMQDVQGALQCYTRAIQIN-----PAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp ------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCH
Confidence 111 234556778888999999999999888742 21111112222233333333
Q ss_pred ChhhhHHhhhhhcccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhh
Q 014576 250 DPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE 299 (422)
Q Consensus 250 ~~~rs~ll~~~~~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~ 299 (422)
..-...+-..+..+|. ....+..|..++. .+-+|++..+.|...+.
T Consensus 128 ~eAi~~~~~Al~l~P~--~~~a~~~L~~~l~--~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKLKPD--FPDAYCNLAHCLQ--IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHCSC--CHHHHHHHHHHHH--HTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--ChHHHhhhhhHHH--hcccHHHHHHHHHHHHH
Confidence 2222222223333432 2334556666664 46677777666765553
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.18 E-value=5.7 Score=33.34 Aligned_cols=100 Identities=11% Similarity=0.013 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
-......+|..+...|++++|...+.....- ++ .-.+++.....++...|+|..|...++|+.......
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~----- 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND----- 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-----
Confidence 4556788999999999999999998875421 11 224467777888999999999999999997642110
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
.+ .+..++..+...++|-+|-.+|..+....
T Consensus 104 ---------------------~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 ---------------------YT----PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ---------------------CH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------------------cH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11 23456688889999999999999988753
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=90.12 E-value=3.8 Score=39.04 Aligned_cols=106 Identities=12% Similarity=0.008 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc--C-------chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA--M-------AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~--~-------~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
..+.....++..+...|++++|...+....--.... . ....+...++....+++..++|.+|...++++..
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778899999999999999999888754221111 1 1223467888889999999999999999999966
Q ss_pred ccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 159 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.. | . .. +.+...+..+...++|-+|-.+|..+...
T Consensus 225 ~~----p----------------------~--~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LD----S----------------------N--NE--KGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HC----T----------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC----C----------------------C--cH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 42 1 0 11 23445667888899999999999998875
No 107
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=90.05 E-value=3.4 Score=32.84 Aligned_cols=94 Identities=11% Similarity=-0.094 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCC
Q 014576 94 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 173 (422)
Q Consensus 94 ~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~ 173 (422)
..+|..+...|++++|...++...-.. + .-.+.+.....++...|++..|...++++.... |
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P-------- 82 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-----P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD----P-------- 82 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--------
Confidence 567888999999999999988755321 1 124566777888999999999999999986532 1
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 174 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 174 ~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+..+ .+...+..+...++|-+|..+|..+...
T Consensus 83 --------------~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 83 --------------KDIA----VHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp --------------TCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --------------CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1112 3345667788899999999999988763
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=89.87 E-value=6.7 Score=31.58 Aligned_cols=137 Identities=9% Similarity=0.014 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHH
Q 014576 8 AGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEI 87 (422)
Q Consensus 8 ~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~ 87 (422)
......+..++..++..|+|+.....+..........-. .....+..+. ...+.+.-+..++......+..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~----- 80 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---YYGNRSLAYL-RTECYGYALGDATRAIELDKKY----- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccc-----
Confidence 345667788899999999999988877754432111101 1111111111 1222333334444333333332
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
......+|.++...|++++|...+....- . .+........+.....++..+++.+|.....++...
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVK-V---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHH-h---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 34667899999999999999999987542 1 122233445566677788899999999888877553
No 109
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=89.76 E-value=8.2 Score=34.89 Aligned_cols=138 Identities=9% Similarity=-0.023 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHH
Q 014576 11 KKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERA 90 (422)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era 90 (422)
..+...++.++...|+++...+.+....+.....-.+.. ..+.-+. ...+.+.-...++......+.. .
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~-------~ 240 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN---KLGATLA-NGNRPQEALDAYNRALDINPGY-------V 240 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---HHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH---HHHHHHH-HcCCHHHHHHHHHHHHHcCCCC-------H
Confidence 455666677777777777776666543322111111110 1011111 1222232233344332233321 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchH-H-----HHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKT-E-----KIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~-e-----K~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.....+|.++...|++++|...++....-........ + ....+....+++...|++..|..+.+++...
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999987653222211111 1 5677788889999999999999998877554
No 110
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=89.37 E-value=5.9 Score=30.22 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
+...+|.++...|++++|...+....--... .-+.......+.....++...+++..|..++.++...
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567899999999999999988875532222 2233344778888899999999999999999988653
No 111
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=89.07 E-value=12 Score=40.20 Aligned_cols=168 Identities=10% Similarity=-0.007 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHH
Q 014576 8 AGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEI 87 (422)
Q Consensus 8 ~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~ 87 (422)
+....++..++.++.+.|+++.-.+.+....+-..+.-.+ ..+-..-+. ..-+.+.-+..++...++.++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a---~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~------ 75 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---HSNLASVLQ-QQGKLQEALMHYKEAIRISPT------ 75 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH---HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC------
Confidence 4556788899999999999999887776533222111111 111111111 112222223333322233333
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
.+..-..||.++.+.|++++|...++...- . ++ .-.+.+.....++...|++.+|...++++.... |
T Consensus 76 -~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~-l----~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P-- 142 (723)
T 4gyw_A 76 -FADAYSNMGNTLKEMQDVQGALQCYTRAIQ-I----NP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK----P-- 142 (723)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----S--
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--
Confidence 245667899999999999999998876431 1 11 224567777889999999999999999986532 1
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 222 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~ 222 (422)
+..+ .+...+..+...++|-+|..+|..+.+
T Consensus 143 --------------------~~~~----a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 --------------------DFPD----AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp --------------------CCHH----HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred --------------------CChH----HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 1112 233455667777888777777776654
No 112
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.87 E-value=5.9 Score=34.97 Aligned_cols=99 Identities=10% Similarity=-0.153 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 168 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~ 168 (422)
.......+|.++...|++++|...+....--. . .-.+.+.....++...|++..|..+++++...... .
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~-- 110 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-P-----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---Y-- 110 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C--
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-C-----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc---c--
Confidence 56677888999999999999998887754211 1 12356677788889999999999999888653210 0
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 169 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. ..+...+..+...++|-+|..+|..+...
T Consensus 111 ---------------------~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 111 ---------------------N----YAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ---------------------T----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------c----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 0 23445667778889999999999988874
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=88.84 E-value=5.2 Score=36.86 Aligned_cols=97 Identities=11% Similarity=-0.037 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccC
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 170 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~ 170 (422)
..-..+|..+...|++++|...+.....-.. .-..++.....++...|++..|...++++.... |
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p----- 69 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELD----G----- 69 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----T-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C-----
Confidence 3456789999999999999998887543211 124677788899999999999999999997632 1
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 171 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. .. +.+...+..+...++|-+|-..|..+...
T Consensus 70 -----------------~--~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 70 -----------------Q--SV--KAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp -----------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------C--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 11 23445677888999999999999988764
No 114
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=88.42 E-value=5 Score=30.86 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=47.8
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEecc--CCcEEEEccCCChHHHHHHHHHHHHHHHHHH
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR--PQGIVCFQVAKDSNDILNSWAMNLEKLLDLV 402 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq--~~giV~F~~~~~~~~~l~~W~~~I~~l~~~v 402 (422)
...++...||+.+|++..-+-+.+..|...|-|...-|. ..+.+.. .....+.+..+...+..+.+.+
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~--t~~g~~~~~~~~~~~~~~~~~~ 101 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYS--AEKPEKVLKEFKSSILGEIERI 101 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEE--ECCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEe--cCcHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999999999999999766654 3333333 2334455555555555544433
No 115
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.26 E-value=3.6 Score=42.03 Aligned_cols=107 Identities=13% Similarity=-0.004 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhccCchH--HHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCC
Q 014576 94 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKT--EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 171 (422)
Q Consensus 94 ~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~--eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~ 171 (422)
...+.-+..+|+|++|..+++...--....+.+. .-+..+-..+.+|...|+|.+|..+..|+.......
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~-------- 384 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL-------- 384 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--------
Confidence 3445557789999999998877654332334332 566777778899999999999999999986643211
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q 014576 172 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 222 (422)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~ 222 (422)
.++..++.- .-+.-.+..|...|+|-+|-..|..+..
T Consensus 385 -------------lG~~Hp~~a-~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 385 -------------YHHNNAQLG-MAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp -------------SCTTCHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------cCCCCHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112223443 3444556778889999999999988776
No 116
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=87.71 E-value=5.9 Score=39.56 Aligned_cols=106 Identities=12% Similarity=0.008 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc--Cc-------hHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA--MA-------KTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~--~~-------~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
..+.....++..+...|+|.+|...+....--.... .+ ...+...++.....++..++|..|...++++..
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 346677889999999999999999887654211111 11 223467888889999999999999999999966
Q ss_pred ccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 159 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... + .. +.+...+..+...++|-+|..+|..+...
T Consensus 346 ~~p--------------------------~--~~--~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LDS--------------------------A--NE--KGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HST--------------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCC--------------------------c--cH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 321 0 11 23445567788899999999999999874
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=87.48 E-value=19 Score=33.94 Aligned_cols=65 Identities=12% Similarity=-0.020 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
++.+...||.+|...|++++|...+....- . ++ .-...+.....++...+++..|...++++...
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~----~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALE-L----DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h----CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 466778999999999999999998887542 1 11 12456777889999999999999999999664
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=87.01 E-value=4 Score=34.91 Aligned_cols=93 Identities=11% Similarity=-0.014 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCC
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 171 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~ 171 (422)
....+|..+...|++++|...+.... ++ -...+.....++...|++..|..+++++.... +
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~------- 68 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD---K------- 68 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---c-------
Confidence 34678999999999999999887642 22 24578888899999999999999999986532 1
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 172 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+..+...++|-+|..+|..+...
T Consensus 69 ----------------~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 69 ----------------HLA----VAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp ----------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------------cch----HHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 001 23445667888899999999999998874
No 119
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.78 E-value=7.2 Score=36.69 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhcC-----CCCCChhhHHHHHHHHHHHHHhCCCChhhhHHhhhhhcc-cCCCC
Q 014576 195 IYYELMIRYYSHNNDYLEICRCYKAIYEIP-----YIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLED-KNLSE 268 (422)
Q Consensus 195 k~~~~~~~~~~~~~~y~ea~~~y~e~~~~~-----~~~~d~~~~~~~L~~~v~~~ILa~~~~~rs~ll~~~~~d-~~~~~ 268 (422)
..|+..+++....+|+-+=-+|+..+-.-. .....+ .....+.+-++|++..+-.++-...|..+-.. +.+.+
T Consensus 60 ~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~-~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~ 138 (274)
T 4b4t_T 60 RILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESD-KKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLED 138 (274)
T ss_dssp -CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSH-HHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhc
Confidence 577888888888888865444444333211 122223 44567777788877765554544445544322 22344
Q ss_pred ChhHH---HHHHHhcccccccchhhHHHHHHHhhhh-hhhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Q 014576 269 IPNFR---LLLKQLVTMEVIQWTSLWNTYKDEFENE-TNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAEL 344 (422)
Q Consensus 269 ip~~~---~L~k~f~~~eli~~~~~~~~y~~~l~~~-~~~~~d~~~~~~~~~L~~~viEhNi~~isk~Ys~Isl~~La~l 344 (422)
-|..+ .+.+++.. ..|..+|.-. ......+...-....+-.+++..-+..+.+-|.+|+++.++++
T Consensus 139 d~~Ik~al~le~al~e----------GnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~ 208 (274)
T 4b4t_T 139 DSLLSYPIKLDRWLME----------GSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKAL 208 (274)
T ss_dssp CHHHHHHHHHHHHHHH----------TCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHc----------CCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 45544 23333332 3455555311 1000011112234566788999999999999999999999999
Q ss_pred hCCC-HHHHHHHHHH
Q 014576 345 LCLS-IQEAEKHLSD 358 (422)
Q Consensus 345 l~ls-~~e~E~~ls~ 358 (422)
|+++ ++++..++.+
T Consensus 209 L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 209 LFFNNEKETEKFALE 223 (274)
T ss_dssp HTCCSHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHH
Confidence 9995 5666655543
No 120
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=86.22 E-value=2.2 Score=32.15 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=35.5
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccC
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRP 372 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~ 372 (422)
++|...||+.||+|...|.+.|.+|..+|.|...-+.|
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 79999999999999999999999999999998776666
No 121
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=86.15 E-value=5.2 Score=36.61 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHh-CCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEc
Q 014576 315 EDLRQRIIEHNILVVSKYYSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 379 (422)
Q Consensus 315 ~~L~~~viEhNi~~isk~Ys~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~ 379 (422)
..|...++..=...+++-|++|+++.++++| ++++++++..+.+- | =++| ++|.|.|.
T Consensus 132 ~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~---G---W~vd-~~g~I~~~ 190 (226)
T 1rz4_A 132 TGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY---G---WSAD-ESGQIFIC 190 (226)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH---T---CEEC-C--CEECC
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC---C---CEEC-CCccEEeC
Confidence 3466778888888999999999999999999 58999999888772 3 1244 66777664
No 122
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.07 E-value=17 Score=31.91 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHHH
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERAR 91 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era~ 91 (422)
.++...+..++..|+|+...+.+....+.....-.+...+ +..+. ...+.+.-+..++......+.. .+ .+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l---~~~~~-~~~~~~~A~~~~~~a~~~~~~~-~~---~~~ 75 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRR---AVCYY-ELAKYDLAQKDIETYFSKVNAT-KA---KSA 75 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHH---HHHHH-HTTCHHHHHHHHHHHHTTSCTT-TC---CHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHH-HHhhHHHHHHHHHHHHhccCch-hH---HHH
Confidence 4566778888899999988877766443221111011111 11111 1122222233333222211111 11 244
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCC
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 171 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~ 171 (422)
.-..+|.++...|++++|.+.+....--.. ...+.+.....++...|++.+|..+.+++.... |.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~----- 140 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDT------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT----TT----- 140 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS----CC-----
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC----CC-----
Confidence 567899999999999999999887553211 123577788899999999999999999997641 10
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 172 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
.... +...+...-..++|-+|-.+|..+....
T Consensus 141 -----------------~~~~----~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 141 -----------------DPKV----FYELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp -----------------CHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -----------------cHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0111 2223312222349999999999998753
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.82 E-value=21 Score=32.69 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
......+|..+...|++++|...++....... .-.+.++...++++..|++..|...++++..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSN------QNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC------cchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34567899999999999999999988653221 1246677788999999999999999998854
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=85.73 E-value=15 Score=31.04 Aligned_cols=131 Identities=9% Similarity=0.025 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHHHHHH
Q 014576 15 TEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIK 94 (422)
Q Consensus 15 ~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era~l~~ 94 (422)
...+..++..|+|+...+.+........ ....+....+. ...+.+.-+..++......++ ......
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~-------~~~~~~ 75 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHS------RICFNIGCMYT-ILKNMTEAEKAFTRSINRDKH-------LAVAYF 75 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCH------HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-------CHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCCh------HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcc-------chHHHH
Confidence 4567778888999988877765432211 11111111111 122223223334422223333 234667
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhccC----------chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 95 KLAKIKEEQGLIAEAADLMQEVAVETFGAM----------AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 95 ~La~i~e~~g~~~eAa~iL~~l~vEt~~~~----------~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.+|.++...|++++|...++...--..+.- ....-.+.+.....++...|++.+|....+++...
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 899999999999999999887553211111 11234577888899999999999999999998653
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=85.04 E-value=15 Score=30.15 Aligned_cols=104 Identities=12% Similarity=-0.006 Sum_probs=74.5
Q ss_pred CChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcch
Q 014576 5 GDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIY 84 (422)
Q Consensus 5 ~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~ 84 (422)
.+-.....++..+...++..|+|+.-.+.+.... . ..|+
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--------------~-------~~p~-------------------- 43 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQAL--------------S-------IAPA-------------------- 43 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------H-------HSTT--------------------
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------H-------hCCc--------------------
Confidence 4455677788888999999999988766654321 1 1121
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 85 VEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 85 ~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
...+...+|.+|...|++++|...+....- . ++ .-...+.....++...+++..|...++++...
T Consensus 44 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 44 ----NPIYLSNRAAAYSASGQHEKAAEDAELATV-V----DP-KYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h----CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 123556789999999999999998876442 1 11 12567777888999999999999999998764
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=85.04 E-value=22 Score=35.35 Aligned_cols=65 Identities=11% Similarity=-0.003 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHhhccCch--HHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 90 ARLIKKLAKIKEEQ--------GLIAEAADLMQEVAVETFGAMAK--TEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 90 a~l~~~La~i~e~~--------g~~~eAa~iL~~l~vEt~~~~~~--~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
......||.+|... |++++|...++...-- ++ ..-.+.+.....++...|++..|...++++...
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44667889999998 9999999988875421 12 145677888899999999999999999998654
No 127
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=84.98 E-value=4.8 Score=30.71 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=49.2
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEe---ccCCcEEEEccCCChHHHHHHHHHHHHHHHHHH
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKI---DRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLV 402 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akI---Dq~~giV~F~~~~~~~~~l~~W~~~I~~l~~~v 402 (422)
..+++..||+.+|+|..-+-..|..|...|-|...- |++...+...+ ...+.+..|...+..+.+.+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~--~g~~~~~~~~~~~~~~~~~~ 98 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITD--FGMEEAKRFLSSLKAVIDGL 98 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECH--HHHHHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999999999998766 44433333332 23355667776666665543
No 128
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=84.34 E-value=35 Score=33.91 Aligned_cols=98 Identities=10% Similarity=0.001 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 89 RARLIKKLAKIKEEQGLI-AEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~-~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
.+.+...+|.++...|++ ++|.+.++...-.. + .-.+.+.....+|...|++..|...++++.... +
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p--- 168 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----P-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---K--- 168 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---C---
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C---
Confidence 467788999999999999 99999988754221 1 124577788899999999999999999996531 0
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHhhc
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN---------NDYLEICRCYKAIYEI 223 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~---------~~y~ea~~~y~e~~~~ 223 (422)
+. ..+...+..+... ++|-+|-.+|.++...
T Consensus 169 -----------------------~~--~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 169 -----------------------NK--VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp -----------------------CH--HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CH--HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 11 3455666777777 9999999999999875
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=84.33 E-value=9.6 Score=35.99 Aligned_cols=102 Identities=13% Similarity=0.027 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
.|..++..+|..+.+.|++++|.+++..+.. ....++ ...-..-+++..++|..|..+++++.... +
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~------~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d--- 166 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPV------AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP---D--- 166 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC------TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS---C---
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC---C---
Confidence 3677889999999999999999998886542 112333 44445569999999999999998553211 0
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
..+.-..+-..+..+...++|-+|-.+|..+...+
T Consensus 167 ----------------------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 167 ----------------------KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred ----------------------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 11122234455688999999999999999998654
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.52 E-value=15 Score=29.10 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHH
Q 014576 7 VAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVE 86 (422)
Q Consensus 7 ~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E 86 (422)
+.....+...++..+++.|+|+.-++.+.. ++ . .-|+.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~----------Al----~-------~~p~~--------------------- 41 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDK----------AI----E-------LDPSN--------------------- 41 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------HH----H-------HCTTC---------------------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----------HH----H-------hCCCC---------------------
Confidence 344556677889999999999987766643 22 1 12221
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 87 IERARLIKKLAKIKEEQGLIAEAADLMQEVA-VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 87 ~era~l~~~La~i~e~~g~~~eAa~iL~~l~-vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
+.+-..+|.+|...|++++|...+.... +......+.......+......+...+++..|..+++|+..
T Consensus 42 ---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 42 ---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2244678999999999999998776532 22112233445567788888899999999999999998854
No 131
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=83.46 E-value=2 Score=32.59 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=33.8
Q ss_pred HHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeE
Q 014576 328 VVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL 365 (422)
Q Consensus 328 ~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i 365 (422)
...+-..+++++.||+.|++|+.-+.+-|..|...|.+
T Consensus 9 ~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 9 DLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 33445678999999999999999999999999999977
No 132
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=83.29 E-value=5.6 Score=30.20 Aligned_cols=64 Identities=11% Similarity=-0.086 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
..+...||.++...|++++|...++...--. . .-...+.....++...|++..|...++++...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-P-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3466789999999999999999998754211 1 11236777889999999999999999998653
No 133
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=83.13 E-value=22 Score=30.66 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHH----------------HHHHHhccCCHHHHHHHHHHh
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILE----------------QVRLCLDRQDYVRAQILSRKI 156 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le----------------~~rL~l~~~D~~~a~~~~~K~ 156 (422)
....|..+...|++++|...+....-.. + .-.+.+.. ...++...|++.+|...++++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-----I-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----H-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3566778889999999999888754211 1 11223333 788899999999999999998
Q ss_pred ccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 157 SPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.... | +.. ..+...+..+...++|-+|-.+|..+...
T Consensus 81 l~~~----p----------------------~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 81 LQKA----P----------------------NNV----DCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHC----T----------------------TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHC----C----------------------CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6542 1 101 23456678888999999999999999985
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.96 E-value=15 Score=28.69 Aligned_cols=104 Identities=8% Similarity=-0.041 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHH
Q 014576 8 AGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEI 87 (422)
Q Consensus 8 ~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~ 87 (422)
+........++..++..|+|+...+.+.... ...|+. .
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---------------------~~~~~~---------------------~ 62 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQAL---------------------GLDATP---------------------Q 62 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH---------------------TSCCCH---------------------H
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------------------HHcccc---------------------h
Confidence 3455667777888888888877655443321 122322 1
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
....+...+|.++...|++++|...+....-- . + .-...+.....++...+++..|..+++++...
T Consensus 63 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~---~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 63 DQAVLHRNRAACHLKLEDYDKAETEASKAIEK-D---G--GDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T---S--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-C---c--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 13456678999999999999999988775421 1 1 11567778888999999999999999998653
No 135
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=82.81 E-value=14 Score=37.44 Aligned_cols=61 Identities=15% Similarity=0.034 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
....||.++...|++++|...++...- .++ .-.+.+.....++...|++..|..+++++..
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLA-----LHP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT-----TST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445556666666666666665554321 111 1133445555556666666666666665543
No 136
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=82.79 E-value=31 Score=32.28 Aligned_cols=95 Identities=8% Similarity=0.003 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCC
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKP 172 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~ 172 (422)
...|+..+...|++++|.+.++...--. + .-.........++...|++..|...+.++.... |
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p------- 166 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYN----P--DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ----P------- 166 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHC----T--TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC----T-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C-------
Confidence 3455556666666666665555433110 0 112233344555666666666666666654321 0
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 173 KEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... ..+...+..+...++|-+|...|..+...
T Consensus 167 ---------------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 167 ---------------NFA----VAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp ---------------TCH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---------------CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 000 12334456666677777777777776653
No 137
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=82.30 E-value=33 Score=32.15 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCC
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 171 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~ 171 (422)
....++.++...|++++|...+....--. + .-...+.....++...|++..|...++++.... |
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p------ 268 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-----P-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ----P------ 268 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----S------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----c-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C------
Confidence 45567777777777777777665533111 1 113445556777888888888888888775421 1
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 172 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
...+ .+...+..+...++|-+|..+|.++...
T Consensus 269 ----------------~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 269 ----------------HFPD----AYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp ----------------SCHH----HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ----------------CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112 2345567777788888888888888764
No 138
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=82.17 E-value=10 Score=37.96 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=69.1
Q ss_pred HhccHHHHHHHHHHHHHHhhccCchH--HHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCccc
Q 014576 102 EQGLIAEAADLMQEVAVETFGAMAKT--EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVV 179 (422)
Q Consensus 102 ~~g~~~eAa~iL~~l~vEt~~~~~~~--eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~ 179 (422)
..|+|++|..+++...--..+.+.+. .-+..+-..+.+|...|+|.+|..+.+|+.......
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~---------------- 373 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH---------------- 373 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH----------------
Confidence 45789999998877553222333332 566667777899999999999999999997643211
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q 014576 180 EEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 222 (422)
Q Consensus 180 ~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~ 222 (422)
.++..++.-. -+.-.+..|.+.++|-+|-..|..+..
T Consensus 374 -----lG~~Hp~~a~-~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 374 -----YPVYSLNVAS-MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -----SCSSCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----cCCCChHHHH-HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1122234433 344557778899999999999988876
No 139
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=82.09 E-value=21 Score=36.18 Aligned_cols=98 Identities=13% Similarity=0.015 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccC
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 170 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~ 170 (422)
.....||.++...|++++|...++...--. + .-.+.+.....++...|++..|..+++++......
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------- 123 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAA-----P-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-------- 123 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Confidence 355789999999999999999888754221 1 12456777889999999999999999998654210
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhhcC
Q 014576 171 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN---NDYLEICRCYKAIYEIP 224 (422)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~---~~y~ea~~~y~e~~~~~ 224 (422)
..+ .+...+..+... +++-+|...|.++....
T Consensus 124 ------------------~~~----~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 124 ------------------EPY----ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp ------------------CHH----HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred ------------------CHH----HHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 011 234455667777 99999999999988753
No 140
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=81.79 E-value=26 Score=30.61 Aligned_cols=134 Identities=10% Similarity=-0.070 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHH
Q 014576 7 VAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVE 86 (422)
Q Consensus 7 ~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E 86 (422)
-+....+...++..+...|+|+.-.+.+....+.....-.+. ...+.-+. ..-+.+.-+..++......++.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~~-~~~~~~~A~~~~~~al~~~~~~---- 110 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF---NYLGIYLT-QAGNFDAAYEAFDSVLELDPTY---- 110 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC----
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH---HHHHHHHH-HccCHHHHHHHHHHHHhcCccc----
Confidence 345677888888888888999888777765443221111111 11111111 1222333334444333333332
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 87 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 87 ~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
......+|.++...|++++|...+....--. ... . .......++...+++..|..+++++..
T Consensus 111 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~-~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 111 ---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PND-P-----FRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-H-----HHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCC-h-----HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3456788999999999999999888754221 111 1 111122344566788888877766644
No 141
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.73 E-value=3.1 Score=31.68 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=33.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccC
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRP 372 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~ 372 (422)
+++...||+.||+|...|.+.|.+|..+|.|.-.-.++
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~ 64 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 64 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 89999999999999999999999999999986543344
No 142
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=81.49 E-value=9.1 Score=39.00 Aligned_cols=109 Identities=8% Similarity=0.012 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-ccC--chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccccc--C
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETF-GAM--AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFD--A 163 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~-~~~--~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~--~ 163 (422)
.+.....||.+|...|+|++|....+... +.+ ..+ +--.-...+.....+|...|+|..|..++.|+....-. +
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMV-DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 57888999999999999999999877643 232 122 22356777888899999999999999999999764321 2
Q ss_pred CCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q 014576 164 DPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 222 (422)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~ 222 (422)
+.+ +.+.++ +......+...+.|.+|-..|+.+-+
T Consensus 429 ~~H--------------------p~~~~~----~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 429 PSH--------------------PITKDL----EAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTS--------------------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--------------------hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 122333 25555677788888888888877754
No 143
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=81.25 E-value=9.7 Score=27.20 Aligned_cols=64 Identities=17% Similarity=0.035 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
+.....+|..+...|++++|...+....--. + .-...+.....++...+++..|..+++++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566789999999999999999888754211 1 11356777788999999999999999998653
No 144
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=81.09 E-value=2.5 Score=32.81 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 327 LVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 327 ~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
+.+.+-..+++++.||+.||+|+.-+.+-|..|...|.+.=
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R 48 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVR 48 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 33444568899999999999999999999999999997753
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=80.93 E-value=10 Score=29.23 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.......||.++...|++++|...++...--. +.. .+.+.....++...|++..|...++++...
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNH--QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678899999999999999999998754221 111 566777788899999999999999998654
No 146
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=80.78 E-value=36 Score=31.67 Aligned_cols=107 Identities=10% Similarity=-0.024 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
.....+|.++...|++++|...+....--... ......-....+-.+.+++..||+..|..++.++...... ++
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~---- 249 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-NN---- 249 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT-TC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC-cc----
Confidence 45668999999999999999999875421111 1111111222223456688999999999999988653210 00
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
..... -+...++.+...++|-+|...+.++...
T Consensus 250 ------------------~~~~~---~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 250 ------------------HFLQG---QWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp ------------------GGGHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------hhhHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 00011 1345578888999999999999887753
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=80.75 E-value=6.9 Score=28.88 Aligned_cols=64 Identities=13% Similarity=-0.078 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHhccc
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDR-QDYVRAQILSRKISPR 159 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~-~D~~~a~~~~~K~~~~ 159 (422)
....+|.++...|++++|...++...-- . +.....+.+.....++... +++..|..+.+++...
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINV-I---EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-S---CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-C---cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 4468899999999999999988875421 1 1112356778888999999 9999999999999664
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=80.50 E-value=11 Score=29.11 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.....+|.++...|++++|...+..+.-.... .....+.++....++...|++..|..+++++...
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35577899999999999999999886532111 1123566777889999999999999999998664
No 149
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=80.04 E-value=15 Score=29.63 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=38.4
Q ss_pred hhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 331 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 331 k~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
.....++.+.||+.+|+++.-+-..+..|+..|-|.-.-|..++
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~ 91 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDR 91 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTB
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCccc
Confidence 34678999999999999999999999999999999877765544
No 150
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=79.81 E-value=28 Score=29.84 Aligned_cols=137 Identities=7% Similarity=-0.054 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHH
Q 014576 11 KKAVTEILQLCFEAKDWKTLNEQIVNLSKKRG--QLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIE 88 (422)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~--qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~e 88 (422)
...+...+..++..|+|+.-.+.+....+... .. . ........+. ...+.+.-+..++......++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~---~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~------- 74 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS-V---TAYNCGVCAD-NIKKYKEAADYFDIAIKKNYN------- 74 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH-H---HHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCS-------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc-H---HHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcc-------
Confidence 36788889999999999999888876443221 11 1 1111111111 122333334444433344444
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA-MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~-~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.......+|.++...|++++|...++...--.... .-.....+.+.....++...|++.+|...++++...
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 34567889999999999999999998754211111 111234577888899999999999999999999653
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=79.56 E-value=16 Score=35.33 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCC
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEV---AVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 165 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l---~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~ 165 (422)
++.+-..||.++...|++++|.+.++.- .-+..+.-....-...+-....+|...|++.+|..++.|+....-....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556667999999999999999888752 1122221112223444556778899999999999999988653211100
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 166 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. . . ....+. -............++|-+|-.+|..+...
T Consensus 130 ~-------~--------~---~~~~~~--~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 130 P-------Y--------R---IESPEL--DCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp S-------S--------C---CCCHHH--HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred c-------c--------c---hhhHHH--HHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 0 0 0 000111 11122234445567899999999988874
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=79.24 E-value=20 Score=27.66 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.+...+|.++...|++++|...+....- . ++ .-...+.....++...|++..|...++++...
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~-~----~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIE-K----DP-NFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-h----CC-CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 3557789999999999999998877442 1 11 12456777888999999999999999988654
No 153
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=79.11 E-value=16 Score=30.33 Aligned_cols=64 Identities=13% Similarity=-0.048 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 157 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~ 157 (422)
......||.++...|++++|...+..+.--. +.......+.....++...|++..|...++++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVN----LGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4577889999999999999999998754211 111112344445677888899988888887763
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=79.04 E-value=18 Score=27.16 Aligned_cols=103 Identities=9% Similarity=-0.104 Sum_probs=71.1
Q ss_pred ChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchH
Q 014576 6 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYV 85 (422)
Q Consensus 6 D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~ 85 (422)
+-+....+...++..++..|+|+...+.+.... . ..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--------------~-------~~~~~-------------------- 45 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAI--------------E-------LNPAN-------------------- 45 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------H-------HCTTC--------------------
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHH--------------H-------cCCCC--------------------
Confidence 445566777788888888888877655543311 1 01210
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 86 EIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 86 E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
......+|.++...|++++|...+....--.. . -...+.....++...+++..|..++.++...
T Consensus 46 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 46 ----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP----A--YSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc----c--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 22456788999999999999998887553211 1 1456777888999999999999999988653
No 155
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=78.60 E-value=27 Score=28.92 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
...+|..+...|++++|...++...-. +..-.+.+.....+++..|++..|...++++..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE------LQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 356788899999999999877753211 112356677778889999999999999988754
No 156
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=78.49 E-value=12 Score=37.40 Aligned_cols=101 Identities=6% Similarity=-0.041 Sum_probs=69.9
Q ss_pred HHHhccHHHHHHHHHHHHHHhh-ccCch--HHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCC
Q 014576 100 KEEQGLIAEAADLMQEVAVETF-GAMAK--TEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGD 176 (422)
Q Consensus 100 ~e~~g~~~eAa~iL~~l~vEt~-~~~~~--~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~ 176 (422)
+..+|+|++|....+... +.. +.+.+ -.-+..+-..+.+|...|+|.+|..+..|+.......
T Consensus 297 ~~~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~------------- 362 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF------------- 362 (429)
T ss_dssp HHHTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHhhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH-------------
Confidence 446789999998887654 233 23333 3567777777889999999999999999987643211
Q ss_pred cccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 177 NVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 177 ~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.++..++.-.- +.-++..|.+.++|-+|-..|..+.+.
T Consensus 363 --------lg~~Hp~~a~~-l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 363 --------FPGSHPVRGVQ-VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp --------SCSSCHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------cCCCChHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11222344333 444567788899999999999888763
No 157
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=78.42 E-value=14 Score=29.68 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=45.6
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcE-EEEccCCChHHHHHHHHHHHH
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI-VCFQVAKDSNDILNSWAMNLE 396 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~gi-V~F~~~~~~~~~l~~W~~~I~ 396 (422)
...++...||+.+|++..-+-..+.+|+..|-|.-..|..++- +.+.-.....+.+..+...+.
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 110 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVG 110 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999998877766663 222222222344555544443
No 158
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=78.40 E-value=11 Score=28.09 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
+.....+|..+...|++++|...++...--. + .-...+.....++...|++..|...++++...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455788999999999999999888754221 1 11456777888999999999999999998654
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=77.92 E-value=22 Score=27.50 Aligned_cols=101 Identities=9% Similarity=-0.059 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHH
Q 014576 9 GTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIE 88 (422)
Q Consensus 9 s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~e 88 (422)
.+...+..++..++..|+|+...+.+.... . ..|+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--------------~-------~~~~~----------------------- 42 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAI--------------T-------RNPLV----------------------- 42 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------H-------HCTTC-----------------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHH--------------h-------hCcCc-----------------------
Confidence 345677788888888888887655554321 1 01211
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV 160 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~ 160 (422)
..+...+|.++...|++++|...+....- .. + .-...+.....++...|++..|...++++....
T Consensus 43 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~----p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 43 -AVYYTNRALCYLKMQQPEQALADCRRALE-LD----G-QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC----c-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 22457789999999999999998887542 11 1 124567778889999999999999999986643
No 160
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.78 E-value=32 Score=34.35 Aligned_cols=70 Identities=10% Similarity=0.066 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 014576 128 EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN 207 (422)
Q Consensus 128 eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~ 207 (422)
+...+...-++++.+.|||..|-.++..+..-.+.. .....|+.|+...+++|.+.
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~------------------------~~~~~kve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS------------------------MEMSEKIQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS------------------------SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------------------ccHHHHHHHHHHHHHHHHHC
Confidence 456666677899999999999999988885433221 12478999999999999999
Q ss_pred ccHHHHHHHHHHHh
Q 014576 208 NDYLEICRCYKAIY 221 (422)
Q Consensus 208 ~~y~ea~~~y~e~~ 221 (422)
+||..|--.+..+.
T Consensus 191 ~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 191 GDYSQATVLSRKIL 204 (445)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99988877766654
No 161
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=77.02 E-value=13 Score=30.52 Aligned_cols=42 Identities=5% Similarity=0.044 Sum_probs=37.1
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|++..-+-..+..|+..|-|.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 457999999999999999999999999999999877665554
No 162
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=77.02 E-value=17 Score=29.39 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=37.5
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|++..-+-..+..|+..|-|.-.-|..++
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 678999999999999999999999999999999877665544
No 163
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=76.86 E-value=13 Score=28.36 Aligned_cols=64 Identities=11% Similarity=-0.150 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
..+...||.++...|++++|...++...--. + .-...+.....++...|++..|...++++...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----P-TYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466789999999999999999988754211 1 12446677788999999999999999988653
No 164
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=76.60 E-value=15 Score=29.50 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=37.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++.+.||+.+|++..-+-+.+..|+..|-|.-.-|..++
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 47999999999999999999999999999999887766555
No 165
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.33 E-value=14 Score=29.72 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=37.8
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcE
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 375 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~gi 375 (422)
...++.+.||+.+|++..-+-..+.+|+..|-|.-.-|..++-
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 3469999999999999999999999999999998777766653
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=76.18 E-value=8.2 Score=29.86 Aligned_cols=89 Identities=10% Similarity=-0.011 Sum_probs=62.2
Q ss_pred HhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCccccc
Q 014576 102 EQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 181 (422)
Q Consensus 102 ~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (422)
..|++++|...++...-. ..++..-...+.....++...|++..|...++++.....
T Consensus 2 ~~g~~~~A~~~~~~al~~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------- 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-------------------- 58 (117)
T ss_dssp -----CCCHHHHHHHHSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------
T ss_pred CCCcHHHHHHHHHHHHHc---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------
Confidence 357888888888764421 122456778888899999999999999999999965421
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 182 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 182 ~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+.. ..+...+..+...++|-+|-..|..+...
T Consensus 59 ------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 59 ------NHQ----ALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp ------TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------Cch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111 23445677888899999999999988874
No 167
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=76.17 E-value=13 Score=29.77 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=38.4
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcE
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 375 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~gi 375 (422)
...++.+.||+.+|++..-+-..+..|+..|-|.-.-|..++-
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 4679999999999999999999999999999998877776663
No 168
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.14 E-value=43 Score=33.06 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCch---------------------HHHHHHH----------------
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAK---------------------TEKIAFI---------------- 133 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~---------------------~eK~e~~---------------- 133 (422)
..-..|+++|.+.|+.++..+++..+.. .++.+++ ...++++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP-FLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT-GGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888887777765431 1122211 1112222
Q ss_pred --H--HHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 014576 134 --L--EQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNND 209 (422)
Q Consensus 134 --L--e~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~ 209 (422)
| ..+.||++.|||.+|...++++....-.. +...+.+..|.+.+++|.+.+|
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~------------------------dd~~~llev~lle~~~~~~~~n 154 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKL------------------------DDKNLLVEVQLLESKTYHALSN 154 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS------------------------SCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc------------------------ccchhHHHHHHHHHHHHHHhcc
Confidence 2 44577999999999998888887643211 1125677889999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 014576 210 YLEICRCYKAIYEIP 224 (422)
Q Consensus 210 y~ea~~~y~e~~~~~ 224 (422)
+..+-..|..+..+.
T Consensus 155 ~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 155 LPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999887777766543
No 169
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=76.11 E-value=9.2 Score=27.33 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHH
Q 014576 124 MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRY 203 (422)
Q Consensus 124 ~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~ 203 (422)
+++....+.+......+...+++.+|..+++++..... . +. ..+...+..
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~--~~--~~~~~l~~~ 52 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------N--NA--EAWYNLGNA 52 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------T--CH--HHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------------------------C--CH--HHHHHHHHH
Confidence 44455667788888999999999999999999865321 0 01 234456678
Q ss_pred HHhhccHHHHHHHHHHHhhc
Q 014576 204 YSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 204 ~~~~~~y~ea~~~y~e~~~~ 223 (422)
+...++|-+|..+|.++...
T Consensus 53 ~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 53 YYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhc
Confidence 88899999999999998874
No 170
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=75.76 E-value=14 Score=29.20 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=37.3
Q ss_pred ccccHHHHHHHh-CCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..+++..||+.+ |++..-+-..|..|...|-|....|..++
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~ 75 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELP 75 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 568999999999 99999999999999999999888876655
No 171
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=75.59 E-value=17 Score=29.18 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=35.8
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++.+.||+.+|+++.-+-..+.+|+..|-|.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 47999999999999999999999999999999877766655
No 172
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=75.51 E-value=19 Score=29.09 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=36.6
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++.+.||+.+|++..-+-..+.+|...|-|.-.-|..++
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 47899999999999999999999999999999877765554
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=75.51 E-value=6.4 Score=37.49 Aligned_cols=105 Identities=9% Similarity=-0.143 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-c----C------chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-A----M------AKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 157 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~----~------~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~ 157 (422)
.+.....++..+...|+|++|...+....--... . . ....+...++....+++..++|..|..+++++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666788999999999999999988763311100 0 0 011123477888889999999999999999986
Q ss_pred cccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 158 PRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
... | . .. +.+...+..+...++|-+|-.+|..+...
T Consensus 258 ~~~----p----------------------~--~~--~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEE----E----------------------K--NP--KALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHC----T----------------------T--CH--HHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhC----C----------------------C--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 531 1 0 11 23445667888999999999999988763
No 174
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=75.33 E-value=20 Score=27.75 Aligned_cols=33 Identities=9% Similarity=-0.025 Sum_probs=31.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEE
Q 014576 336 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368 (422)
Q Consensus 336 Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ak 368 (422)
++..+||..+|+|+.-+.+++..|...|-|.-.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999999999988665
No 175
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=75.25 E-value=27 Score=28.13 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=32.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 336 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 336 Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
+|.+.||+.+|+|..-+-+.|..|...|-|.-.-+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 89999999999999999999999999999965443
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=75.02 E-value=67 Score=31.64 Aligned_cols=66 Identities=9% Similarity=-0.120 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.++.+...+|..|...|++++|...+....- . ++ .-...++.....|+..++|..|...++++...
T Consensus 315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~----~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALG-L----DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c----CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3567788999999999999999998877542 1 11 12456777889999999999999999999764
No 177
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=74.71 E-value=8.9 Score=27.68 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=31.4
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
..++.+.||+.+|+|...+.+.|..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4599999999999999999999999999999754
No 178
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=74.65 E-value=15 Score=29.96 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=36.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++...||+.+|++..-+-..+..|+..|-|.-.-|..++
T Consensus 52 ~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 52 TPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 457999999999999999999999999999999877665444
No 179
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=74.63 E-value=13 Score=30.24 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=36.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc---EEEEc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG---IVCFQ 379 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g---iV~F~ 379 (422)
..++.+.||+.+|+++.-+-+.+..|+..|-|.-.-|..++ .|...
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 98 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLT 98 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEEC
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeEC
Confidence 67999999999999999999999999999999877755444 45443
No 180
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.33 E-value=13 Score=30.23 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=34.5
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|++..-+-..+..|...|-|.-.-|..++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 567999999999999999999999999999999877665444
No 181
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=74.31 E-value=18 Score=29.42 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=36.0
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|++..-+-..+..|...|-|.-.-|..++
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCc
Confidence 357999999999999999999999999999999877665555
No 182
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=74.09 E-value=15 Score=30.56 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=35.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|+++.-+-+.+..|+..|-|.-.-|..++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 367999999999999999999999999999999887766655
No 183
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=73.61 E-value=11 Score=30.33 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=48.5
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc---EEEEccCCChHHHHHHHHHHHHHHHHHH
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG---IVCFQVAKDSNDILNSWAMNLEKLLDLV 402 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g---iV~F~~~~~~~~~l~~W~~~I~~l~~~v 402 (422)
..++.+.||+.++++..-+=+.+.+|+..|-|.-.-|..++ .|... ....+.+......+..++...
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT--~~G~~~~~~~~~~~~~~~~~~ 121 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVN--AQQRKKIESLLSRVNKRITEA 121 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECC--SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC--HHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999776666555 34433 223455555555555555444
No 184
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=73.43 E-value=25 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=33.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
.++...||+.+|+|+.-+-+.|..|...|-|...-+
T Consensus 34 ~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 34 DQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp CBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 489999999999999999999999999999977655
No 185
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=73.34 E-value=14 Score=30.03 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=37.6
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++.+.||+.+|+|..-+=+.+..|...|-|.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 57999999999999999999999999999999888777665
No 186
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=72.87 E-value=20 Score=28.97 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=37.7
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|+++.-+-..+..|+..|-|.-.-|..++
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCC
Confidence 357999999999999999999999999999999888776665
No 187
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=72.53 E-value=16 Score=26.84 Aligned_cols=60 Identities=15% Similarity=-0.048 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHH-HHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 94 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIA-FILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 94 ~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e-~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
..+|..+...|++++|...++...-.. +. -.. .+.....++...+++..|...+.++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE-----PV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-----SS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 467888999999999999998754221 11 123 6677788899999999999999998654
No 188
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=72.45 E-value=13 Score=30.35 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=36.1
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++.+.||+.+|+++.-+-..+..|+..|-|.-.-|..++
T Consensus 44 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 45999999999999999999999999999999876665554
No 189
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=72.27 E-value=20 Score=28.97 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=32.7
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
... ++.+.||+.+|++..-+-..+..|...|-|.-.-|..++
T Consensus 49 ~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~ 90 (146)
T 3tgn_A 49 EES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDA 90 (146)
T ss_dssp TCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred hCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 345 999999999999999999999999999999887765555
No 190
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=71.91 E-value=30 Score=26.17 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=57.9
Q ss_pred CChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcch
Q 014576 5 GDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIY 84 (422)
Q Consensus 5 ~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~ 84 (422)
...+.+...+..++..++..|+|+...+.+....+.....-.+ ....+..+. ...+.+.-+..++......+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~--- 82 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL---YSNRAACYT-KLLEFQLALKDCEECIQLEPT--- 82 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHH---HHHHHHHHT-TTTCHHHHHHHHHHHHHHCTT---
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHH-HhccHHHHHHHHHHHHHhCCC---
Confidence 4556788889999999999999999888777654322211111 111111111 222233333334432223222
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 014576 85 VEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 117 (422)
Q Consensus 85 ~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~ 117 (422)
.......+|.++...|++++|...+....
T Consensus 83 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 83 ----FIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23455677777888888888887776643
No 191
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=71.86 E-value=15 Score=29.47 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=36.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|+++.-+-..+..|+..|-|.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 457999999999999999999999999999999877665554
No 192
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=71.54 E-value=22 Score=29.85 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=37.4
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|++..-+-+.+..|+..|-|.-.-|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 357999999999999999999999999999999887776555
No 193
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=71.33 E-value=18 Score=30.23 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=38.0
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++...||+.+|+++.-+=+.+..|+..|-|.-.-|..++
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 357999999999999999999999999999999888776666
No 194
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=71.01 E-value=28 Score=25.50 Aligned_cols=62 Identities=6% Similarity=-0.202 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 92 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 92 l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
....+|.++...|++++|...+....-. .. .-...+.....++...+++..|..++.++...
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDL-KP-----DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh-Cc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4567888999999999999988875421 11 12456677788899999999999999998653
No 195
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=70.76 E-value=9.4 Score=28.70 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=30.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
.+|+..||+.||+|+.-|.+.|..|...|.|.-
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 499999999999999999999999999998853
No 196
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=70.75 E-value=71 Score=30.60 Aligned_cols=123 Identities=8% Similarity=-0.090 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH-hccCCHHHHHHHHHHhccccccCCCccccCC
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLC-LDRQDYVRAQILSRKISPRVFDADPSKEKKK 171 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~-l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~ 171 (422)
...+|.++...|++++|...++...- ...++..+...++....+. ...+++.+|...+.++............ .
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~--~ 411 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK--M 411 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--H
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--H
Confidence 45789999999999999998886431 1234455555555555443 4678999999988887543110000000 0
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 172 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
......++...-...++ + ...+...+..|...|+|-+|-.+|..+.+..
T Consensus 412 ~~~l~~~~~~~l~~~p~--~--~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGA--D--SEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHCC---C--TTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 00000000000000000 0 0234556777788888888888888888753
No 197
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=70.31 E-value=26 Score=27.89 Aligned_cols=66 Identities=8% Similarity=-0.059 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 014576 128 EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN 207 (422)
Q Consensus 128 eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~ 207 (422)
.-.+.+......++..|+|..|...++++.... |. +. .++...+..+...
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~------------------------~~--~~~~~lg~~~~~~ 65 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HY------------------------DA--RYFLGLGACRQSL 65 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT------------------------CH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----Cc------------------------cH--HHHHHHHHHHHHH
Confidence 446677788899999999999999999986532 10 11 3455667888899
Q ss_pred ccHHHHHHHHHHHhhc
Q 014576 208 NDYLEICRCYKAIYEI 223 (422)
Q Consensus 208 ~~y~ea~~~y~e~~~~ 223 (422)
++|-+|..+|..+...
T Consensus 66 g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 66 GLYEQALQSYSYGALM 81 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999999875
No 198
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=70.30 E-value=32 Score=26.11 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=50.2
Q ss_pred cccccHHHH----HHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHHHHHHHHHHHH
Q 014576 333 YSRITLKRL----AELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVE 403 (422)
Q Consensus 333 Ys~Isl~~L----a~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~~I~~l~~~v~ 403 (422)
...++...| |+.+|++..-+-+.+..|...|-+.-.-|.....+...+ ...+.+..|...+..+...+.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~--~G~~~~~~~~~~~~~~~~~~~ 92 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTE--KGKLFAISLKTAIETYKQIKK 92 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECH--HHHHHHHHHHHHHHHHHHHHh
Confidence 356889999 899999999999999999999999887787444444432 234556666665555555443
No 199
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=70.20 E-value=35 Score=30.17 Aligned_cols=94 Identities=9% Similarity=0.048 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHhccccccCCC
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLD----RQDYVRAQILSRKISPRVFDADP 165 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~----~~D~~~a~~~~~K~~~~~~~~~~ 165 (422)
+.....|+.++...|++++|...++...- .+ -.+.+.....++.. .+|+.+|..+.+++...- .
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~- 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y- 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C-
Confidence 34557788899999999999988876442 11 12345556777888 899999998888885421 0
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHhhc
Q 014576 166 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH----NNDYLEICRCYKAIYEI 223 (422)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~----~~~y~ea~~~y~e~~~~ 223 (422)
.+ .+...+..+.. .++|-+|..+|..+.+.
T Consensus 74 ------------------------~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 74 ------------------------SN----GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp ------------------------HH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ------------------------HH----HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 01 22344566666 88888888888888763
No 200
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=70.09 E-value=21 Score=30.81 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=39.0
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
+...++.+.||+.+|++..-+=..|..|+..|-|.-.-|..++
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 3568999999999999999999999999999999888877776
No 201
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=70.09 E-value=69 Score=29.66 Aligned_cols=110 Identities=9% Similarity=0.042 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
+.....|+.++...|++++|...+....--. ....+......+....+++...||+..|..++.++....-...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~----- 208 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK----- 208 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-----
Confidence 4556779999999999999999988754322 2222223456677789999999999999999998865321100
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
.. ...........+.++...+++-+|...+.++...
T Consensus 209 -----------------~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 209 -----------------YH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp -----------------CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred -----------------cc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 00 0111111123445677899999999999887753
No 202
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.03 E-value=28 Score=28.63 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=36.3
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++...||+.+|++..-+-+.+..|+..|-|.-.-|..++
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 46999999999999999999999999999999877655544
No 203
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=69.77 E-value=34 Score=25.91 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=34.7
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCC
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQ 373 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~ 373 (422)
-..++...||+.+|+|..-+-+.+..|...|-+...-+..+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 45799999999999999999999999999999977655433
No 204
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=69.41 E-value=32 Score=31.44 Aligned_cols=64 Identities=14% Similarity=-0.039 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 157 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~ 157 (422)
..+...||.++...|++++|...+..+.-... .....+....-..++...|+...|...++|+.
T Consensus 219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p----~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 219 AALATQLALQLHQVGRNEEALELLFGHLRXDL----TAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----ccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 56788999999999999999999998764321 11223334445666777788777777777653
No 205
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=69.22 E-value=23 Score=30.47 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=35.6
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE---EEeccC
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 372 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~---akIDq~ 372 (422)
-.+++.+.||+.+|+|+..+-+.+.+|...|.|. +.+|+.
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 3589999999999999999999999999999884 567765
No 206
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=69.20 E-value=37 Score=26.92 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=48.3
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHHHHHHHHH-HHHHHHhhhhhH
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLD-LVEKSCHQIHKE 412 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~~I~~l~~-~v~k~~~lI~ke 412 (422)
...+...||+.+|+|..-+-..|..|...|-|...-+. +.+.+.-....-..+..|-.....+.. .++....++..+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g--r~~~y~l~~~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~ 107 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG--RVRTCAIEKEPFTAVEAWLAEQQELWESRTDRLEQFVTEH 107 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET--TEEEEEECSHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC--CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45799999999999999999999999999999877662 334443333334556666666655442 334444444433
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=69.12 E-value=14 Score=36.85 Aligned_cols=71 Identities=8% Similarity=0.011 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cC--chHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AM--AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV 160 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~~--~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~ 160 (422)
.+.....||.+|...|+|++|....+... +.+. .+ +--.-...+.....+|...|+|..|..++.|+....
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKII-KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 57788999999999999999999887753 2331 22 233667778888999999999999999999997643
No 208
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=68.98 E-value=16 Score=26.99 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=31.7
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
..++.+.||+.+|+|..-+-+.|..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4699999999999999999999999999999874
No 209
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=68.96 E-value=43 Score=28.68 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.++...||.++...|++++|...+....--. + .-.+.++....++...|++..|...++++...
T Consensus 54 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 54 SKLATELALAYKKNRNYDKAYLFYKELLQKA-----P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4456679999999999999999888744211 1 22467778889999999999999999999664
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=68.71 E-value=15 Score=36.62 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-c--CchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-A--MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV 160 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~--~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~ 160 (422)
.+++...||.+|...|+|++|....+... +.+. . -+--.-...+.....+|...|++..|..+++|+....
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L-~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTM-EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 58888999999999999999999888654 2321 1 2233677788889999999999999999999997643
No 211
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=68.51 E-value=8.6 Score=38.68 Aligned_cols=56 Identities=9% Similarity=-0.098 Sum_probs=26.4
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Q 014576 96 LAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 157 (422)
Q Consensus 96 La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~ 157 (422)
+|..+...|++++|.+.++...--. + .-...+.....++...+++..|...++++.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-----P-SNAIYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-----C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444445555555555554422110 0 113344444555555555555555555554
No 212
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=68.50 E-value=10 Score=30.92 Aligned_cols=42 Identities=7% Similarity=0.166 Sum_probs=29.8
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|+++.-+-..+.+|+..|-|.-.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 347999999999999999999999999999999877776665
No 213
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=68.36 E-value=12 Score=30.08 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=36.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|+++.-+-..+.+|...|-|.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 356999999999999999999999999999999877765444
No 214
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=68.13 E-value=24 Score=28.22 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=36.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
.++.+.||+.+|++..-+-..+.+|+..|-|.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 6999999999999999999999999999999877665555
No 215
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=68.01 E-value=29 Score=28.64 Aligned_cols=42 Identities=7% Similarity=0.136 Sum_probs=35.5
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++...||+.+|++..-+-+.+.+|+..|-|.-.-|..++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 457999999999999999999999999999999876654444
No 216
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=67.96 E-value=33 Score=27.85 Aligned_cols=66 Identities=6% Similarity=-0.039 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 014576 128 EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN 207 (422)
Q Consensus 128 eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~ 207 (422)
.-.+.+......++..|+|..|...++++.... | . +. .++...+..+...
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p----------------------~--~~--~~~~~lg~~~~~~ 68 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----H----------------------Y--DS--RFFLGLGACRQAM 68 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----------------------T--CH--HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----c----------------------c--cH--HHHHHHHHHHHHH
Confidence 456677788899999999999999999886531 1 0 01 2345667788899
Q ss_pred ccHHHHHHHHHHHhhc
Q 014576 208 NDYLEICRCYKAIYEI 223 (422)
Q Consensus 208 ~~y~ea~~~y~e~~~~ 223 (422)
++|-+|..+|..+...
T Consensus 69 g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 69 GQYDLAIHSYSYGAVM 84 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999999875
No 217
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=67.62 E-value=23 Score=29.87 Aligned_cols=47 Identities=6% Similarity=0.015 Sum_probs=35.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc---EEEEc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG---IVCFQ 379 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g---iV~F~ 379 (422)
-..++.+.||+.++++..-+=+.|..|+..|-|.-.-|..++ .|...
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 456999999999999999999999999999999877655444 45544
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=67.01 E-value=29 Score=26.51 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFG--AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~--~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.-+..||..+...|+|..|..-++.-. +... ......+.+++......+...|++.+|..+.+++...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al-~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQAL-RQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHH-HhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 346789999999999999999887743 2221 1112356677777788899999999999999999653
No 219
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=66.41 E-value=33 Score=27.70 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=35.6
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 337 TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 337 sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
+.+.||+.+|+++.-+=..+..|...|-|.-.-|..++
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 89 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDR 89 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 99999999999999999999999999999888877766
No 220
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=66.12 E-value=14 Score=29.93 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=37.8
Q ss_pred HHHHHhhhc--ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEE
Q 014576 325 NILVVSKYY--SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376 (422)
Q Consensus 325 Ni~~isk~Y--s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV 376 (422)
-+..+++.+ ..++.+.||+.+|+|+..+.+.+..|...|-|...=.+..|+.
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~ 67 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYV 67 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceE
Confidence 334444444 5689999999999999999999999999998865433334443
No 221
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=66.01 E-value=21 Score=29.64 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=37.1
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc---EEEEc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG---IVCFQ 379 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g---iV~F~ 379 (422)
..++.+.||+.+|++..-+-+.+.+|+..|-|.-.-|..++ .|...
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT 114 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLT 114 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeEC
Confidence 57999999999999999999999999999999877665554 45443
No 222
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=65.93 E-value=20 Score=29.45 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.0
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++...||+.+|++..-+-..+..|+..|-|.-.-|..++
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 457999999999999999999999999999999766554443
No 223
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=65.49 E-value=48 Score=26.04 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHH
Q 014576 8 AGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEI 87 (422)
Q Consensus 8 ~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~ 87 (422)
+.........+..+++.|+|+.-.+.+.... . .-|+.
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al--------------~-------~~p~~---------------------- 46 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAV--------------K-------RDPEN---------------------- 46 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------H-------HCTTC----------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------H-------hCCCC----------------------
Confidence 5566777888899999999988766664321 1 11210
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQE-VAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~-l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
..+-..+|.++...|++++|...+.. |.++... .+.+.....++...|++..|...++++...
T Consensus 47 --~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 47 --AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-------IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12334566666777777777665543 4444442 134556666777777777777777777653
No 224
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=65.41 E-value=34 Score=35.86 Aligned_cols=158 Identities=13% Similarity=0.005 Sum_probs=95.7
Q ss_pred HHhccHHHHHHHHHHHHHHhh---ccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCc
Q 014576 101 EEQGLIAEAADLMQEVAVETF---GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 177 (422)
Q Consensus 101 e~~g~~~eAa~iL~~l~vEt~---~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~ 177 (422)
...|++++|.+.+....--.+ +.. ...-.+.++...++++..|++..|...++++....-
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---------------- 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---------------- 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc----------------
Confidence 678999999999887540000 011 112345788889999999999999999999865321
Q ss_pred ccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHhCCCChhhhHHh
Q 014576 178 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLL 257 (422)
Q Consensus 178 ~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ILa~~~~~rs~ll 257 (422)
+ +. ..+...+..+...++|-+|-.+|..+..... ......+..+.+|.-+..+.. ...+-
T Consensus 465 ----------~--~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 465 ----------W--RW--RLVWYRAVAELLTGDYDSATKHFTEVLDTFP-----GELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp ----------C--CH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred ----------c--hH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 1 11 2344566778889999999999999997432 122222333444555666655 44443
Q ss_pred hhhhcccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhh
Q 014576 258 NSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE 299 (422)
Q Consensus 258 ~~~~~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~ 299 (422)
.-+..+|. ....+..+..++.. .=++++....|...+.
T Consensus 525 ~al~~~P~--~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 525 TVWSTNDG--VISAAFGLARARSA--EGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHCTT--CHHHHHHHHHHHHH--TTCHHHHHHHHHTSCT
T ss_pred HHHHhCCc--hHHHHHHHHHHHHH--cCCHHHHHHHHHhhcc
Confidence 34444543 23345566666653 3344554455555443
No 225
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=65.41 E-value=33 Score=25.96 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=33.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
...+...||+.+|+|..-+-+.|..|...|-+...-+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999999999999987643
No 226
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=65.09 E-value=38 Score=26.36 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=38.2
Q ss_pred cccccHHHHHHHh-CCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...+++..|++.+ |+|+.-+-..|..|...|-|..+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4678999999999 99999999999999999999988886655
No 227
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=64.20 E-value=32 Score=35.43 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHH
Q 014576 195 IYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWY 243 (422)
Q Consensus 195 k~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 243 (422)
++.++.-+||...++|++|++-.+.+-.+ .-.-+-.+|++.|..|+-+
T Consensus 218 ~~~dLLWryy~k~~~~~~AA~VL~~LA~s-~~~i~L~~RIeyLsrA~~~ 265 (525)
T 3i5p_A 218 KISNILWVYYSRRSKFFESAEILYRLATS-NFDITLFERIEFLSRANGF 265 (525)
T ss_dssp CHHHHHHTHHHHCCSHHHHHHHHHHHHSS-SSCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHH
Confidence 46778889999999999999999999986 2222346899999999854
No 228
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=63.56 E-value=57 Score=26.28 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchH
Q 014576 6 DVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYV 85 (422)
Q Consensus 6 D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~ 85 (422)
+.......+...+..+++.|+|+.-.+.+.... ..+ .... ....|+.+... . +
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al----------~~~-~~~~--~~~~~~~~~~~-------~-------~ 58 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDAL----------TRL-DTLI--LREKPGEPEWV-------E-------L 58 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------HHH-HHHH--HTSCTTSHHHH-------H-------H
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHH-HHhc--ccCCCCHHHHH-------H-------H
Confidence 344567788899999999999999877765422 111 1100 01233322110 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 86 EIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 86 E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
......+-..+|..|...|+|++|...+....- . ++ .-...++.....+...|++..|...++++...
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~-~----~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK-R----EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-c----CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 122456778899999999999999998776432 1 11 22456777889999999999999999998664
No 229
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=62.88 E-value=18 Score=29.71 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=37.7
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE--EeccCCc---EEEEc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA--KIDRPQG---IVCFQ 379 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a--kIDq~~g---iV~F~ 379 (422)
...++.+.||+.+|+++.-+-..+..|+..|-|.- .-|..++ .|...
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT 104 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLS 104 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEEC
Confidence 35699999999999999999999999999999987 5555544 45443
No 230
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=62.87 E-value=19 Score=29.25 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=32.8
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|+++.-+-+.+.+|+..|-|.-.-|..++
T Consensus 52 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 458999999999999999999999999999999766655444
No 231
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=62.23 E-value=21 Score=29.47 Aligned_cols=42 Identities=2% Similarity=0.096 Sum_probs=32.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++...||+.+|++..-+-..+..|+..|-|.-.-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 467999999999999999999999999999999766654444
No 232
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=61.60 E-value=19 Score=29.95 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=35.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE---EEeccC
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 372 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~---akIDq~ 372 (422)
-.++++..||+.+|+|+..+-+.+.+|...|.|. +.+|+.
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 3689999999999999999999999999999874 467865
No 233
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=61.10 E-value=19 Score=29.79 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=36.1
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE---EEeccC
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 372 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~---akIDq~ 372 (422)
-..+++...||+.+|+|+..+-+.+.+|...|.|. +.+|+.
T Consensus 16 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 16 KDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 34789999999999999999999999999999885 457765
No 234
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=60.82 E-value=47 Score=24.40 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHH
Q 014576 9 GTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIE 88 (422)
Q Consensus 9 s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~e 88 (422)
....++..++..+...|+|+...+.+....+. .|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~----------------------- 42 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------DPNN----------------------- 42 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC-----------------------
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------CcCc-----------------------
Confidence 34667778888888888888766555432211 1110
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQE-VAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~-l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
......+|.++...|++++|...+.. +...... ...+.....++...+++..|..+.+++...
T Consensus 43 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 43 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 11234556666666777777665543 2222221 123445566666677777777777666653
No 235
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=60.48 E-value=36 Score=25.36 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccH
Q 014576 131 AFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDY 210 (422)
Q Consensus 131 e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y 210 (422)
..+.....++...|++..|...++++...... .. ..+..++..+...++|
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~----~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD--------------------------YV----GTYYHLGKLYERLDRT 57 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CT----HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------cH----HHHHHHHHHHHHcCCH
Confidence 45667788899999999999999999654211 01 1455677888999999
Q ss_pred HHHHHHHHHHhhc
Q 014576 211 LEICRCYKAIYEI 223 (422)
Q Consensus 211 ~ea~~~y~e~~~~ 223 (422)
-+|...|..+...
T Consensus 58 ~~A~~~~~~al~l 70 (100)
T 3ma5_A 58 DDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988864
No 236
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=59.76 E-value=15 Score=30.69 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=40.9
Q ss_pred HHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEE
Q 014576 324 HNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376 (422)
Q Consensus 324 hNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV 376 (422)
|-+..++..+.. +.+.||+.+++|+..+++.+..|...|-|...=. ..|+.
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~ 63 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGAS 63 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCE
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCce
Confidence 455556655566 9999999999999999999999999999977654 44443
No 237
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=59.76 E-value=52 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=34.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEecc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR 371 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq 371 (422)
..++...||+.+|+|..-+-+.+..|...|-+...-|.
T Consensus 37 ~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 37 PGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp CSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 46899999999999999999999999999999766553
No 238
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=58.37 E-value=30 Score=27.96 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=34.8
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+++++.-+-+.+..|+..|-|.-.-|..++
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 568999999999999999999999999999999877766555
No 239
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=58.17 E-value=74 Score=26.20 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=39.2
Q ss_pred HhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 329 VSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 329 isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
+.+.=..++.+.||+.+|+++.-+=..+.+|+..|-|.=.-|..++
T Consensus 40 L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 40 INRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp HHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 3333345677899999999999999999999999999888888777
No 240
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=58.15 E-value=19 Score=29.94 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=35.2
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE---EEeccC
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 372 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~---akIDq~ 372 (422)
-.+++.+.||+.+|+|+..+-+.+.+|...|.|. +.+|..
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 4689999999999999999999999999999874 456754
No 241
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=57.73 E-value=23 Score=29.57 Aligned_cols=53 Identities=19% Similarity=0.086 Sum_probs=40.9
Q ss_pred HHHHHHhhhc--ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEE
Q 014576 324 HNILVVSKYY--SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376 (422)
Q Consensus 324 hNi~~isk~Y--s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV 376 (422)
|-+..++... ..++.+.||+.+|+|+..+++.+..|...|-+...=-+..|+.
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQ 69 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEE
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCee
Confidence 4445555443 3599999999999999999999999999999887544444543
No 242
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=57.60 E-value=24 Score=28.37 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=36.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++...||+.+|++..-+-+.+..|...|-|.-.-|..++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 356999999999999999999999999999999877765444
No 243
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=56.92 E-value=30 Score=27.16 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=47.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc--EEEEccCCChHHHHHHHHHHHHHHHHHHHHH
Q 014576 341 LAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG--IVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 405 (422)
Q Consensus 341 La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g--iV~F~~~~~~~~~l~~W~~~I~~l~~~v~k~ 405 (422)
|++.+++++.-+-..|.+|..+|-|...-+..+| -..|.=.....+.+..|......+...++++
T Consensus 32 l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~ 98 (108)
T 3l7w_A 32 IKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGI 98 (108)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445789999999999999999999887764344 2334333334578888888888887777764
No 244
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=56.39 E-value=1e+02 Score=26.96 Aligned_cols=160 Identities=9% Similarity=0.059 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhc---CCCCHHHHHHHHHHHHhhhcCcchHH
Q 014576 10 TKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYID---QTPDLDTRIELIKTLNSVSAGKIYVE 86 (422)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~---~~~~~~~~~~li~tL~~~~~~ki~~E 86 (422)
...++..+...+...++++.-.+.+..... .+... + ......-+.. ...+.+.-...++..... +
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~-a---~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~----- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENS-G---CFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N----- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHH-H---HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHH-H---HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--C-----
Confidence 456778889999999999998888876554 22221 1 1111112222 133333333333322211 2
Q ss_pred HHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHhcc
Q 014576 87 IERARLIKKLAKIKEE----QGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLD----RQDYVRAQILSRKISP 158 (422)
Q Consensus 87 ~era~l~~~La~i~e~----~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~----~~D~~~a~~~~~K~~~ 158 (422)
.......|+.+|.. .|++++|...++...- . + -.+.+.....+|.. .+|+.+|..+++++..
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~-~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD-L-K------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T-T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH-c-C------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 24466789999999 9999999998886431 1 1 23556667778888 9999999999999865
Q ss_pred ccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHhhc
Q 014576 159 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH----NNDYLEICRCYKAIYEI 223 (422)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~----~~~y~ea~~~y~e~~~~ 223 (422)
.- + .+. +...+..+.. .++|-+|..+|..+.+.
T Consensus 143 ~~---~-------------------------~~a----~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 143 LN---D-------------------------GDG----CTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp TT---C-------------------------HHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cC---c-------------------------HHH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 21 0 011 2234455555 88999999999998874
No 245
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=56.08 E-value=35 Score=27.86 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=33.1
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|+++.-+-..+..|+..|-|.-.-|..++
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~ 94 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDK 94 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCc
Confidence 477999999999999999999999999999999877665555
No 246
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=56.03 E-value=25 Score=28.69 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=32.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++.+.||+.+++++.-+=+.+..|+..|-|.-.-|..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 35899999999999999999999999999999877666655
No 247
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=55.97 E-value=54 Score=34.30 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.....+|..+...|++++|...++...-... .-.+.+.....+++..|++..|...++++...
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVG------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667889999999999999998887553211 12456777788899999999999999998654
No 248
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=55.70 E-value=19 Score=29.99 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=36.0
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE--EeccCCcE
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA--KIDRPQGI 375 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a--kIDq~~gi 375 (422)
..-.|.+.||+.+|+++.++.+.|..|+..|-|.= +.|..+++
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~ 93 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIK 93 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCce
Confidence 45689999999999999999999999999998854 55665443
No 249
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=55.62 E-value=24 Score=29.75 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=35.2
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE---EEeccC
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 372 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~---akIDq~ 372 (422)
..+++...||+.+|+|+..+-+.+.+|...|.|. +.+|..
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 4578999999999999999999999999999874 567754
No 250
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=54.43 E-value=1.8e+02 Score=29.16 Aligned_cols=170 Identities=9% Similarity=0.109 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHhh--h-cCCCC--HHHHHHHHHHHHhhhcCcchH
Q 014576 13 AVTEILQLCFEAKDWKTLNEQIVNLSKKRGQL--KQAVTAMVQQAMQY--I-DQTPD--LDTRIELIKTLNSVSAGKIYV 85 (422)
Q Consensus 13 ~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~ql--k~ai~~~v~~~~~~--l-~~~~~--~~~~~~li~tL~~~~~~ki~~ 85 (422)
++...++.|.+.|+++...+.+..+.. +|-- -.+-+.+|.-+... . ...+. .+.-..+++.+. ...+-.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~---~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI---VDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH---HTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH---HhCCCC
Confidence 466777888888888887777766432 2211 11222333322110 0 00111 111122333222 111111
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCC
Q 014576 86 EIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 165 (422)
Q Consensus 86 E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~ 165 (422)
. ...-..|...|...|++++|.+++.++... |-.++ +..+--.+.-|...|++..|..+.......-..
T Consensus 104 d---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--- 172 (501)
T 4g26_A 104 N---EATFTNGARLAVAKDDPEMAFDMVKQMKAF--GIQPR---LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV--- 172 (501)
T ss_dssp C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC---
T ss_pred C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCc---cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC---
Confidence 0 123356778889999999999999998743 22221 223445667788999999999998887543211
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 166 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+ +. .-|..++..+...+++-+|...|.+.-+.
T Consensus 173 ---------------------P---d~--~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 173 ---------------------P---EE--PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp ---------------------C---CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------C---CH--HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 1 11 35678888899999999999999988764
No 251
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=54.25 E-value=3.2e+02 Score=31.96 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 94 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 94 ~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
..+|..++++|+|++|...... ...+...++.+...|++..|-..++|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~k--------------A~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNN--------------VSNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHh--------------hhHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 3699999999999999986665 24777888888888999999999999865
No 252
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=54.16 E-value=18 Score=29.87 Aligned_cols=44 Identities=7% Similarity=0.151 Sum_probs=34.3
Q ss_pred hhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 331 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 331 k~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
.....++...||+.+|++..-+-..+..|+..|-|.-.-|..++
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 34567999999999999999999999999999999766555444
No 253
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=53.96 E-value=61 Score=27.57 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=42.4
Q ss_pred HHHHHHhhhc--ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEE
Q 014576 324 HNILVVSKYY--SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 377 (422)
Q Consensus 324 hNi~~isk~Y--s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~ 377 (422)
|-+..++... ..++.+.||+.+|+|+..+++.+..|...|-+...=-+..|+.-
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 86 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVL 86 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEE
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEe
Confidence 4444455443 35999999999999999999999999999999887555556543
No 254
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=53.39 E-value=1e+02 Score=26.12 Aligned_cols=117 Identities=12% Similarity=-0.130 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccC------c-hHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 87 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAM------A-KTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 87 ~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~------~-~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
++.+..-..++..+...|+|++|........--. ... + .......+......+...|+|..|-..++|+...
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456666888999999999999998666422111 110 1 1123347778888899999999999999999764
Q ss_pred cccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 160 VFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
+-...+ +.++..+.-++=+-..+..+..-++|-+|-.+|..+.+.
T Consensus 87 ~n~~~e-------------------~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 87 FNRRGE-------------------LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHCC-------------------TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccc-------------------CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 100000 001211221111145567788899999999999999874
No 255
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=53.33 E-value=17 Score=27.41 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=32.5
Q ss_pred HhhhcccccHHHHHHHh-CCCHHHHHHHHHHHHhcCeE
Q 014576 329 VSKYYSRITLKRLAELL-CLSIQEAEKHLSDMVVSKAL 365 (422)
Q Consensus 329 isk~Ys~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i 365 (422)
.++.=++-.|..++.++ +..+-++-+.+..||.+|++
T Consensus 15 k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 15 KSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVL 52 (78)
T ss_dssp HHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred cccccccchHHHHHHHccccCHHHHHHHHHHHHhcCce
Confidence 34455677799999999 99999999999999999987
No 256
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=53.16 E-value=39 Score=28.19 Aligned_cols=41 Identities=5% Similarity=0.046 Sum_probs=35.1
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++...||+.+|++..-+-..|..|+..|-|.-.-|..++
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 101 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENR 101 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCC
Confidence 47999999999999999999999999999999888887777
No 257
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=52.78 E-value=54 Score=25.50 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=33.7
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
..+++..||+.+|+|+.-+-..|..|...|-|...-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987643
No 258
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=52.29 E-value=47 Score=25.10 Aligned_cols=45 Identities=7% Similarity=0.059 Sum_probs=36.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEc
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 379 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~ 379 (422)
.++...||+.+|++..-+=+.+..|...|-|...-|+-...|...
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 389999999999999999999999999999944445544455554
No 259
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=52.10 E-value=31 Score=28.53 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=35.5
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeE---EEEeccC
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL---VAKIDRP 372 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i---~akIDq~ 372 (422)
-.++++..||+.+|+|+.-+-+.+.+|...|-| .+.+|+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 368999999999999999999999999999987 4567765
No 260
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=51.96 E-value=51 Score=25.61 Aligned_cols=63 Identities=11% Similarity=-0.057 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
......||.++...|++++|...++...- . ++. -.+.+.....++...|++..|...++++..
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l----~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARM-L----DPK-DIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34667899999999999999998876432 1 111 234667778889999999999999998865
No 261
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=51.17 E-value=56 Score=27.46 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=36.5
Q ss_pred hhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeE---EEEeccC
Q 014576 331 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL---VAKIDRP 372 (422)
Q Consensus 331 k~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i---~akIDq~ 372 (422)
+-=.++++..||+.+|+|+..+-+-+.+|...|.| .|.+|..
T Consensus 13 ~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 13 QEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp TTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 33467899999999999999999999999999976 4778865
No 262
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=50.69 E-value=38 Score=24.55 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHH
Q 014576 134 LEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 213 (422)
Q Consensus 134 Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea 213 (422)
+.....++..+++..|...++++.... | ...+ +.+...+..+...++|-+|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~----p----------------------~~~~---~~~~~lg~~~~~~~~~~~A 54 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE----P----------------------VGKD---EAYYLMGNAYRKLGDWQKA 54 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC----S----------------------STHH---HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----C----------------------CcHH---HHHHHHHHHHHHcCCHHHH
Confidence 456778899999999999999986532 1 1011 1445667788889999999
Q ss_pred HHHHHHHhhc
Q 014576 214 CRCYKAIYEI 223 (422)
Q Consensus 214 ~~~y~e~~~~ 223 (422)
..+|..+...
T Consensus 55 ~~~~~~al~~ 64 (99)
T 2kc7_A 55 LNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998875
No 263
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=49.76 E-value=28 Score=27.08 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=32.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ak 368 (422)
..++...||+.+|+|..-+-+.+..|...|-+...
T Consensus 32 ~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 32 TEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp SCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 36899999999999999999999999999998654
No 264
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=49.63 E-value=15 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.6
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHH
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDM 359 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~m 359 (422)
|=+.+++.+|..+|++++++|..+..+
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 889999999999999999999988643
No 265
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=49.59 E-value=25 Score=28.74 Aligned_cols=43 Identities=5% Similarity=0.088 Sum_probs=33.6
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE--EeccCCc
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA--KIDRPQG 374 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a--kIDq~~g 374 (422)
....++.+.||+.+|++..-+-+.+..|+..|-|.- ..|..++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 457899999999999999999999999999999985 3355555
No 266
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=49.27 E-value=42 Score=33.48 Aligned_cols=95 Identities=5% Similarity=-0.167 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
+.....+|..|...|++++|...++...- +++ .-...+.....++...+++.+|...++++.......
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------ 107 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIE-----LDK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD------ 107 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----SCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence 44667899999999999999998876442 111 124566777889999999999999999986642110
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYK 218 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~ 218 (422)
.+. .+.......+...++|.+|-..|.
T Consensus 108 --------------------~~~--~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 108 --------------------KDA--KMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --------------------TTH--HHHHHHHHHHHHHHHHCCC-----
T ss_pred --------------------HHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 011 122222333666788988888887
No 267
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=48.83 E-value=1.5e+02 Score=26.76 Aligned_cols=99 Identities=7% Similarity=0.083 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
..+...++.+++..|++++|..+++...- . ++..-...++.-+.++...|++..|..+++++.... |.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~--- 166 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLA-I----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RT--- 166 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST----TC---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CC---
Confidence 34677899999999999999998887542 1 111100166777788888999999999999986531 11
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHhhc
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRY-YSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~-~~~~~~y~ea~~~y~e~~~~ 223 (422)
. .+. +...+.. +...+++-+|...|..+...
T Consensus 167 ------------------~-~~~----~~~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 167 ------------------R-HHV----YVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp ------------------C-THH----HHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred ------------------C-HHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 112 1222222 12358999999999888775
No 268
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=48.69 E-value=46 Score=33.46 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=63.1
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 80 AGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 80 ~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
+.+.++. .+.--..||..+..-|+|.+|.+..... .....+....-.|...|+|..|+....++.
T Consensus 140 eA~~~Y~--~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-- 204 (449)
T 1b89_A 140 AAKLLYN--NVSNFGRLASTLVHLGEYQAAVDGARKA-----------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-- 204 (449)
T ss_dssp THHHHHH--HTTCHHHHHHHHHTTTCHHHHHHHHHHH-----------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT--
T ss_pred HHHHHHH--HhhhHHHHHHHHHHhccHHHHHHHHHHc-----------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH--
Confidence 3344443 3455667888888888888877644432 123455556677888889988866544321
Q ss_pred cccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 160 VFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
. .++ + ...++.+|...|.|.||.+.|......
T Consensus 205 --~-----------------------~ad--~-----l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 205 --V-----------------------HAD--E-----LEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp --T-----------------------CHH--H-----HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred --h-----------------------CHh--h-----HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 0 011 2 235778889999999999999988864
No 269
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=48.46 E-value=42 Score=26.45 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=33.7
Q ss_pred cccHHHHHHHh-CCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 335 RITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 335 ~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
++++..|++.+ |+|+.-+-+.|..|...|-|.-+.+
T Consensus 42 ~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 42 RQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp CBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 36699999999 9999999999999999999998888
No 270
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=48.37 E-value=24 Score=30.28 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=35.3
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE---EEeccC
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 372 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~---akIDq~ 372 (422)
-.++++..||+.+|+|+..+-+.+.+|...|.|. |.+|..
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 4689999999999999999999999999999874 567753
No 271
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=48.22 E-value=46 Score=26.30 Aligned_cols=45 Identities=9% Similarity=0.179 Sum_probs=38.0
Q ss_pred hhcccc-cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEE
Q 014576 331 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 377 (422)
Q Consensus 331 k~Ys~I-sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~ 377 (422)
.|=+++ +...||+.+|+|..-+-+.+..|..+|-|..+ +..|+..
T Consensus 28 ~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V 73 (113)
T 3tqn_A 28 VEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLV 73 (113)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEE
Confidence 567788 99999999999999999999999999987644 5566544
No 272
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=48.19 E-value=38 Score=27.62 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=34.4
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...++.+.||+.+|++..-+-+.+.+|+..|-|.-.-|..++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 467999999999999999999999999999999877655444
No 273
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=46.95 E-value=26 Score=29.14 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=34.5
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE---EEecc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDR 371 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~---akIDq 371 (422)
-.++++..||+.+|+|+..+-+.+.+|...|.|. +.+|.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 3689999999999999999999999999999873 55665
No 274
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=46.95 E-value=17 Score=27.69 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=30.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 336 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 336 Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
++...||+.||+|...+-+.|-.|..+|.|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999998866
No 275
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=46.68 E-value=4.1 Score=38.22 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=0.0
Q ss_pred ccccHHHHHHHh-CCCHHHHHHHHHHHHhcCeEEEEecc
Q 014576 334 SRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDR 371 (422)
Q Consensus 334 s~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i~akIDq 371 (422)
.=|+++.|++.| +++++++.+.+-.|+.+|.||..||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 456778899888 79999999999999999999999995
No 276
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=44.96 E-value=29 Score=28.19 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=31.5
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
-.+++++.||+.+|+|+.-+-+.+.+|...|-|.
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 4678999999999999999999999999999874
No 277
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=44.11 E-value=70 Score=23.92 Aligned_cols=63 Identities=5% Similarity=-0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccH
Q 014576 131 AFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDY 210 (422)
Q Consensus 131 e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y 210 (422)
..+.....++...|++..|...++++..... ... ..+...+..+...++|
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------------------~~~----~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP--------------------------TYS----VAWKWLGKTLQGQGDR 69 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCH----HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--------------------------CcH----HHHHHHHHHHHHcCCH
Confidence 5677788899999999999999999865321 001 2344567888889999
Q ss_pred HHHHHHHHHHhhc
Q 014576 211 LEICRCYKAIYEI 223 (422)
Q Consensus 211 ~ea~~~y~e~~~~ 223 (422)
-+|...|..+...
T Consensus 70 ~~A~~~~~~al~~ 82 (115)
T 2kat_A 70 AGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 278
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=43.47 E-value=66 Score=27.80 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 014576 130 IAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNND 209 (422)
Q Consensus 130 ~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~ 209 (422)
.-.+++|++-.+..+-|..|+....++....-..+.. . ..+.+-.-+-+.+..+-++++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~-------------------~--sp~~~~~~l~~ladalf~~~e 78 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPEL-------------------F--SPPQKYQLLVYHADSLFHDKE 78 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTS-------------------S--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccc-------------------c--cHHHHHHHHHHHHHHHHcccH
Confidence 3457899999999999999999999976643221110 0 135555666677788889999
Q ss_pred HHHHHHHHHHHhh
Q 014576 210 YLEICRCYKAIYE 222 (422)
Q Consensus 210 y~ea~~~y~e~~~ 222 (422)
|..|...|..+..
T Consensus 79 yrrA~~~y~qALq 91 (167)
T 3ffl_A 79 YRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 279
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=42.90 E-value=53 Score=24.45 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHhcCeEEE
Q 014576 348 SIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 348 s~~e~E~~ls~mI~~~~i~a 367 (422)
|.++++.+|..+|.+|++.+
T Consensus 46 t~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 46 TLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp CHHHHHHHHHHHHHTTSEEC
T ss_pred CHHHHHHHHHHHHhCCeEEE
Confidence 45788889999999998853
No 280
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=42.69 E-value=1.4e+02 Score=26.78 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHHH
Q 014576 11 KKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERA 90 (422)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~era 90 (422)
...+...+..++..|+|+...+.+....+.....-. -..+.+.-+. ..-+.+.-+..++......++. .
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~-------~ 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---YYTNRALCYL-KMQQPEQALADCRRALELDGQS-------V 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---HHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTC-------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---HHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC-------H
Confidence 456778889999999999988877654432221111 1111111111 1122222233333333333332 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEV 116 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l 116 (422)
.....+|..+...|++++|...++..
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46678899999999999999888764
No 281
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=42.69 E-value=37 Score=25.61 Aligned_cols=45 Identities=4% Similarity=-0.020 Sum_probs=35.6
Q ss_pred cccHHHHHHHhCCCHHH-HHHHHHHHHhcCeEE-EEeccCCcEEEEc
Q 014576 335 RITLKRLAELLCLSIQE-AEKHLSDMVVSKALV-AKIDRPQGIVCFQ 379 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e-~E~~ls~mI~~~~i~-akIDq~~giV~F~ 379 (422)
.++.+.||+.+|+++.- +=+.+.+|+..|-|. ..-|+....|...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT 76 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLT 76 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEEC
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEEC
Confidence 69999999999999999 999999999999997 2223333344443
No 282
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=42.38 E-value=2.4e+02 Score=27.05 Aligned_cols=99 Identities=7% Similarity=-0.102 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCC-HHHHHHHHHHhccccccCCCcc
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQD-YVRAQILSRKISPRVFDADPSK 167 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D-~~~a~~~~~K~~~~~~~~~~~~ 167 (422)
-+.+...++.++...|++++|...+.....-. + .-.+.+.....++...|+ +..|-..++++......
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----- 164 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-----A-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----- 164 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----c-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-----
Confidence 35566777888888888888888777644211 1 123344555566666774 88888888877553210
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 014576 168 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 223 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~ 223 (422)
..+ .+...+..+...++|-+|-.+|..+...
T Consensus 165 ---------------------~~~----a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 165 ---------------------NYQ----VWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp ---------------------CHH----HHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ---------------------CHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 011 2334445566667777777777777763
No 283
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=42.27 E-value=1.4e+02 Score=24.39 Aligned_cols=26 Identities=0% Similarity=-0.139 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHH
Q 014576 10 TKKAVTEILQLCFEAKDWKTLNEQIV 35 (422)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~l~~~i~ 35 (422)
...++..+...++..|+|+.-.+.+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~ 60 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFR 60 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555666666666666554444
No 284
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=42.16 E-value=21 Score=29.15 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=27.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++.+.||+.+|+++.-+=..+.+|+..|-|.-.-|..++
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~Dr 96 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNA 96 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 57999999999999999999999999999999776665555
No 285
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=41.99 E-value=1.2e+02 Score=25.62 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 90 ARLIKKLAKIKEEQG---LIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 90 a~l~~~La~i~e~~g---~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
......+|-.+-..+ ++.++..+|+++--+. ++..+-+.+....--|...+||.+|..+.+++...
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 346666676666666 8889999999966432 34456666666677789999999999999999663
No 286
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=41.68 E-value=56 Score=26.33 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=38.3
Q ss_pred hhcccc-cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEE
Q 014576 331 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCF 378 (422)
Q Consensus 331 k~Ys~I-sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F 378 (422)
+|=+++ |...||+.+|+|..-+-+.+..|..+|-|..+ +..|...-
T Consensus 32 ~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~ 78 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVT 78 (125)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEe
Confidence 567788 69999999999999999999999999988653 45575443
No 287
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=41.59 E-value=66 Score=27.92 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=38.6
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHH
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWA 392 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~ 392 (422)
-.++-+.||..+|++++-+-+.+.+|..+|-|.- ..|-|...++ +.|..+.
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~----~~L~~~~ 229 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL----DGKRIKIIDC----DRLQKTA 229 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH----HHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee----CCCEEEEeCH----HHHHHHh
Confidence 4688999999999999999999999999998743 2344555443 4455443
No 288
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=40.85 E-value=39 Score=27.17 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=35.8
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++.+.||+.+|++..-+-+.+..|...|-|.-..|..++
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 47999999999999999999999999999999776654443
No 289
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=40.66 E-value=47 Score=28.55 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=34.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEcc
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 380 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~ 380 (422)
.++-+.||..+|++++-+-+.+.+|-.+|-|.- ..|-|...+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeC
Confidence 678899999999999999999999999998842 245555443
No 290
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=40.38 E-value=40 Score=27.71 Aligned_cols=40 Identities=8% Similarity=0.144 Sum_probs=35.1
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE---EeccC
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA---KIDRP 372 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a---kIDq~ 372 (422)
-.+++...||+.+|+|+..+-+.+..|...|-|.. .+|..
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 34799999999999999999999999999998854 67753
No 291
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=40.33 E-value=2.1e+02 Score=25.79 Aligned_cols=69 Identities=6% Similarity=0.004 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV 160 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~ 160 (422)
..+...++.++...|++++|..+++..... ..+++....+++..-+++....|++..|..+.+++....
T Consensus 203 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTS--GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS--SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 456788899999999999999998875421 124554566778878888888999999999999987643
No 292
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=40.20 E-value=3.6e+02 Score=31.50 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc------cCchHHHHHHHHHHHHHHhccC---------------C
Q 014576 87 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG------AMAKTEKIAFILEQVRLCLDRQ---------------D 145 (422)
Q Consensus 87 ~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~------~~~~~eK~e~~Le~~rL~l~~~---------------D 145 (422)
-|.+.+...+.-+|...|+|+.|+..+.+=+-+++. .+++..-.|++-+.+..|++.+ |
T Consensus 1352 ~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD 1431 (1630)
T 1xi4_A 1352 AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLD 1431 (1630)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCC
Confidence 467889999999999999999999888876555542 2355566778888888888888 8
Q ss_pred HHHHHHHHHHhcc
Q 014576 146 YVRAQILSRKISP 158 (422)
Q Consensus 146 ~~~a~~~~~K~~~ 158 (422)
+.|+-...+|...
T Consensus 1432 ~~R~V~l~~~~~~ 1444 (1630)
T 1xi4_A 1432 HTRAVNYFSKVKQ 1444 (1630)
T ss_pred hHHHHHHHHHcCC
Confidence 8888888887755
No 293
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=39.94 E-value=60 Score=26.97 Aligned_cols=37 Identities=16% Similarity=-0.018 Sum_probs=32.2
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
..++.+.||+.+|+|+..+++.+..|...|-+...=-
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC
Confidence 3589999999999999999999999999999876533
No 294
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=39.72 E-value=2.5e+02 Score=26.50 Aligned_cols=139 Identities=6% Similarity=-0.032 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cCchHHHHHHHHHHHHHHhccC--CHHHHHHHHHHhccccccCCC
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQ--DYVRAQILSRKISPRVFDADP 165 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~-~~~~~eK~e~~Le~~rL~l~~~--D~~~a~~~~~K~~~~~~~~~~ 165 (422)
-..+...++.++...|+.+.|.+.++.++- ... ......-+-+.|-.+.+.+..| ++..|--++.........
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--- 210 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTN-AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--- 210 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS---
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC---
Confidence 344778899999999999999999998752 110 0111455566666675555544 899998888887553210
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-CCCCC----ChhhHHHHHHHH
Q 014576 166 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI-PYIKE----DPAQWMPVLRKI 240 (422)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~-~~~~~----d~~~~~~~L~~~ 240 (422)
| ....+- +. .+.+.++|-+|-..+..+... |.+.. || +--.+|.++
T Consensus 211 --------~-------------~~~~lL---ln----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p-~~~~~LaN~ 261 (310)
T 3mv2_B 211 --------W-------------KTQLGL---LN----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL-YKPTFLANQ 261 (310)
T ss_dssp --------H-------------HHHHHH---HH----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS-SHHHHHHHH
T ss_pred --------c-------------ccHHHH---HH----HHHHcCCHHHHHHHHHHHHHhcccccccccCCC-CCHHHHHHH
Confidence 0 011221 11 578889999988888754432 11100 12 123567676
Q ss_pred HHHHHhCCCChhhhHHhhhhhc
Q 014576 241 CWYLVLAPHDPMQSSLLNSTLE 262 (422)
Q Consensus 241 v~~~ILa~~~~~rs~ll~~~~~ 262 (422)
|.+.....- +-.+++.++..
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHhCh--HHHHHHHHHHH
Confidence 666666543 44677777775
No 295
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=39.14 E-value=96 Score=26.54 Aligned_cols=92 Identities=15% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccC----CHHHHHHHHHHhccccccCCC
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQ----DYVRAQILSRKISPRVFDADP 165 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~----D~~~a~~~~~K~~~~~~~~~~ 165 (422)
......|+.+|...|++++|.. .+..--..--.+-+.....+|.. + |+.+|..+++++...-..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~--------~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~--- 85 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEY--------WAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSK--- 85 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHhcCCCHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCH---
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHhh
Q 014576 166 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH----NNDYLEICRCYKAIYE 222 (422)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~----~~~y~ea~~~y~e~~~ 222 (422)
.-+...+.+|.. .+|+.+|..+|..+.+
T Consensus 86 -----------------------------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 86 -----------------------------SGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp -----------------------------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred -----------------------------HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
No 296
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=38.89 E-value=39 Score=28.81 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=40.0
Q ss_pred HHHHHHhhh-cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEE
Q 014576 324 HNILVVSKY-YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 376 (422)
Q Consensus 324 hNi~~isk~-Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV 376 (422)
|-+..++.. =..++.+.||+.+|+|+..+++.+..|...|-+.+.=-+..|+.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQ 69 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeE
Confidence 344444432 24599999999999999999999999999998876644444543
No 297
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.68 E-value=2.7e+02 Score=26.67 Aligned_cols=141 Identities=14% Similarity=0.150 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHhhhc---CCCCHHHHHHHHHHHHhhhcC----
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSK---KRGQLKQAVTAMVQQAMQYID---QTPDLDTRIELIKTLNSVSAG---- 81 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k---~~~qlk~ai~~~v~~~~~~l~---~~~~~~~~~~li~tL~~~~~~---- 81 (422)
+....|..-|.++++|+..++.+..-+. +.+|.-.+. .+.-.+++.+. ..++.+.+-++++.++.+.+.
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~-DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r 114 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG-DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR 114 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH
Confidence 3445566667788899988887764332 334443332 22222222222 224455555555555533321
Q ss_pred cchHHH-------------HHHHHHHHHHHHHHHhccHHHHH-----------HHHHHHHHHhhccCchHHHHHHHHHHH
Q 014576 82 KIYVEI-------------ERARLIKKLAKIKEEQGLIAEAA-----------DLMQEVAVETFGAMAKTEKIAFILEQV 137 (422)
Q Consensus 82 ki~~E~-------------era~l~~~La~i~e~~g~~~eAa-----------~iL~~l~vEt~~~~~~~eK~e~~Le~~ 137 (422)
+-|+.. ---.|-..+|.+|.++|++.+|- +.+.++.+|++..-++.+.--|+.+-+
T Consensus 115 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaV 194 (336)
T 3lpz_A 115 KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAV 194 (336)
T ss_dssp HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 111100 00346778999999999999883 577788888876656778877888878
Q ss_pred HHHhccCCHHHHHHHH
Q 014576 138 RLCLDRQDYVRAQILS 153 (422)
Q Consensus 138 rL~l~~~D~~~a~~~~ 153 (422)
=-||..+|..-|....
T Consensus 195 L~yL~l~n~~~A~~~~ 210 (336)
T 3lpz_A 195 LPYLLVANVRAANTAY 210 (336)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 7899999998887643
No 298
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=38.32 E-value=86 Score=23.67 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccH
Q 014576 131 AFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDY 210 (422)
Q Consensus 131 e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y 210 (422)
+-++++.+.+...+||.+|...++++....-... . .+ .. +...+...+.-+...|+|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~---------~~---------~~----~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-I---------ST---------ID----KVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-C---------CS---------SC----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-C---------Cc---------cc----HHHHHHHHHHHHHHccCH
Confidence 4577889999999999999999999876532110 0 00 01 113456667778889999
Q ss_pred HHHHHHHHHHhhc
Q 014576 211 LEICRCYKAIYEI 223 (422)
Q Consensus 211 ~ea~~~y~e~~~~ 223 (422)
.+|-.+|.++..-
T Consensus 63 ~~A~~~~~~al~l 75 (104)
T 2v5f_A 63 DKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998863
No 299
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=38.23 E-value=1.5e+02 Score=24.21 Aligned_cols=62 Identities=5% Similarity=0.101 Sum_probs=46.6
Q ss_pred cccccHHHHHHHh-CCCHHHHHHHHHHHHhcCeEEEEeccCCc-EEEEccCCC------hHHHHHHHHHH
Q 014576 333 YSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG-IVCFQVAKD------SNDILNSWAMN 394 (422)
Q Consensus 333 Ys~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i~akIDq~~g-iV~F~~~~~------~~~~l~~W~~~ 394 (422)
....+++.|++.+ |+|+.-+-..|..|..+|-|.-+.+..++ .|.+.-... .-..+.+|...
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~ 106 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGES 106 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHH
Confidence 4678999999999 99999999999999999999877766544 233332222 23567788754
No 300
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=38.18 E-value=64 Score=26.05 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=38.6
Q ss_pred hhcccc-cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEE
Q 014576 331 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCF 378 (422)
Q Consensus 331 k~Ys~I-sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F 378 (422)
+|=.++ +...||+.+|+|..-+-+.+..|..+|-|.. -+..|+..-
T Consensus 30 ~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~ 76 (126)
T 3by6_A 30 SANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFIT 76 (126)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEc
Confidence 456789 9999999999999999999999999998854 455676443
No 301
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=36.97 E-value=87 Score=26.90 Aligned_cols=33 Identities=6% Similarity=0.025 Sum_probs=30.4
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
-.++-+.||..+|++++-+-+.+++|-.+|-|.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 457889999999999999999999999999884
No 302
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=36.19 E-value=20 Score=32.03 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=35.7
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCC-------ChHHHHHHHHHHHHHHHHHHH
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAK-------DSNDILNSWAMNLEKLLDLVE 403 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~-------~~~~~l~~W~~~I~~l~~~v~ 403 (422)
-.++-+.||..+|++++-+-+.+++|..+|-|.- ..|-|..-++. ....-+..|+..+++|=+.++
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~ 248 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALD 248 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEESCHHHHHHHHTSSCCCC---------------
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhc
Confidence 4679999999999999999999999999998743 23333333221 011236677877777765554
No 303
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=36.15 E-value=61 Score=27.54 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=34.8
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEcc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 380 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~ 380 (422)
-.++-+.||..+|++++-+-+.+.+|..+|-|.- + .|-|...+
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~--~~~i~i~d 187 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRS--G--YGKIQLLD 187 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--E--TTEEEESC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--C--CCEEEEeC
Confidence 3578899999999999999999999999998852 2 35555543
No 304
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=36.08 E-value=98 Score=28.95 Aligned_cols=63 Identities=11% Similarity=-0.077 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
.+...||.+|...|+|++|...+....- . ++ .-...++.....|...++|..|...++++...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~-~----~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLT-E----EE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHH-H----CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4668899999999999999998877542 1 11 22456777889999999999999999999664
No 305
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=35.98 E-value=83 Score=25.67 Aligned_cols=42 Identities=12% Similarity=0.244 Sum_probs=36.3
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
-..++.+.||+.++++..-+=+.+.+|+..|-|.=.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp GGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 446999999999999999999999999999999988887777
No 306
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=35.55 E-value=95 Score=23.28 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=31.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ak 368 (422)
..++...||+.+|+|..-+-+.|..|...|-|...
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45899999999999999999999999999998754
No 307
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=35.26 E-value=72 Score=27.58 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=34.2
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEcc
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 380 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~ 380 (422)
.++-+.||..+|++++-+-+.+++|..+|-|.- ..|-|...+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 218 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISD 218 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcC
Confidence 578999999999999999999999999998743 235555443
No 308
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=35.01 E-value=41 Score=30.59 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=39.7
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEcc
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 380 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~ 380 (422)
-....+.+.||+.+|+|+..|+..|.+|...|-+. -..+|.|..+.
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~~ 220 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLDE 220 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEECH
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEecH
Confidence 46889999999999999999999999999999887 33567777764
No 309
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=34.87 E-value=1.2e+02 Score=23.20 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=36.1
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 379 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~ 379 (422)
..+++..||+.+|+|..-+-..|..|...|-+...-+ .+.+.|.
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~--gr~~~y~ 81 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ--GQSMIYS 81 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe--CCEEEEE
Confidence 4579999999999999999999999999999976544 2344444
No 310
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=34.86 E-value=74 Score=26.87 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=34.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEcc
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 380 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~ 380 (422)
.++-+.||+.+|+|++-+-+.+.+|..+|-|.- + .|-|...+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~--~~~i~i~d 180 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIAT--A--YRRVYLLD 180 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE--E--TTEEEECC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--c--CCEEEEeC
Confidence 578899999999999999999999999998742 2 34455543
No 311
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=34.70 E-value=1.7e+02 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=32.8
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
...++..||+.+|+|..-+-..|..|...|-+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3579999999999999999999999999998876543
No 312
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=34.50 E-value=1.3e+02 Score=21.66 Aligned_cols=65 Identities=9% Similarity=-0.054 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 014576 130 IAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNND 209 (422)
Q Consensus 130 ~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~ 209 (422)
.+.+......+...|+|.+|...++++..... . +. ..+...+..+...++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------~--~~--~~~~~lg~~~~~~g~ 53 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--------------------------Q--NP--VGYSNKAMALIKLGE 53 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------------------------T--CH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------C--CH--HHHHHHHHHHHHhcC
Confidence 45567778889999999999999999865321 0 01 234566788889999
Q ss_pred HHHHHHHHHHHhhcC
Q 014576 210 YLEICRCYKAIYEIP 224 (422)
Q Consensus 210 y~ea~~~y~e~~~~~ 224 (422)
|-+|-.+|..+....
T Consensus 54 ~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 54 YTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998753
No 313
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=34.26 E-value=2.2e+02 Score=29.31 Aligned_cols=90 Identities=9% Similarity=-0.097 Sum_probs=54.9
Q ss_pred HHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCccccCCCCCCCccc
Q 014576 100 KEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVV 179 (422)
Q Consensus 100 ~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~ 179 (422)
...-|++++|.++...+ +.. ..+-..+++++..+|+..|+..+.++...-.. .-++
T Consensus 662 ~l~~~~~~~A~~~~~~~--------~~~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l-------------~~l~ 717 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--------SAE---MKWRALGDASLQRFNFKLAIEAFTNAHDLESL-------------FLLH 717 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--------CCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH-------------HHHH
T ss_pred hhhcCCHHHHHHHHHhh--------CcH---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhh-------------HHHH
Confidence 45567777777754432 222 35556678899999999999998888552100 0000
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q 014576 180 EEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 222 (422)
Q Consensus 180 ~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~ 222 (422)
... ++. .....++......++|..|..+|...++
T Consensus 718 ---~~~-~~~-----~~~~~~~~~a~~~~~~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 718 ---SSF-NNK-----EGLVTLAKDAETTGKFNLAFNAYWIAGD 751 (814)
T ss_dssp ---HHT-TCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ---HHc-CCH-----HHHHHHHHHHHHcCchHHHHHHHHHcCC
Confidence 000 010 1223556777788999999999888765
No 314
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=34.21 E-value=56 Score=31.74 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHHHHHH---HhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 322 IEHNILV---VSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 322 iEhNi~~---isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
.++|.+. +.+-...+|-..||+.+|+|..-+-+.+.+|+.+|-+.-
T Consensus 14 r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4455433 334567899999999999999999999999999998843
No 315
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=33.86 E-value=1.8e+02 Score=23.30 Aligned_cols=57 Identities=7% Similarity=0.288 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccc-cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEE
Q 014576 315 EDLRQRIIEHNILVVSKYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 377 (422)
Q Consensus 315 ~~L~~~viEhNi~~isk~Ys~I-sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~ 377 (422)
..++..|....+ +|=+++ +...||+.||+|..-+-+-+..|..+|-|..+ +..|..+
T Consensus 21 ~~i~~~I~~G~l----~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V 78 (134)
T 4ham_A 21 QKIKEQVVKGVL----QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFI 78 (134)
T ss_dssp HHHHHHHHHTSS----CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred HHHHHHHHcCCC----CCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEE
Confidence 444444444443 677888 88999999999999999999999999998765 5567644
No 316
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=33.30 E-value=63 Score=31.75 Aligned_cols=46 Identities=13% Similarity=-0.004 Sum_probs=37.2
Q ss_pred HHHHHHHHh---hhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 322 IEHNILVVS---KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 322 iEhNi~~is---k~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
.++|.+.|- +-...+|-..||+.+|+|..-+-+.+.+|+.+|-|.-
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 345544333 4467899999999999999999999999999998754
No 317
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=33.29 E-value=1.8e+02 Score=22.94 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=32.3
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ak 368 (422)
..+++..||+.+|+|..-+-..|..|...|-+...
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56899999999999999999999999999988764
No 318
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=33.22 E-value=40 Score=28.71 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=30.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
.++-+.||..+|++++-+-+.+.+|..+|-|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 58899999999999999999999999999874
No 319
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.85 E-value=72 Score=27.95 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=35.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
..++...||+.+|++..-+=+.|.+|+..|-|.-.-|..++
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~Dr 101 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDK 101 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC----
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 56999999999999999999999999999999888876666
No 320
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.67 E-value=2.5e+02 Score=27.22 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--HhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 014576 91 RLIKKLAKIKEEQGLIAEAADLMQEVAV--ETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSR 154 (422)
Q Consensus 91 ~l~~~La~i~e~~g~~~eAa~iL~~l~v--Et~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~ 154 (422)
.+....+.+|...||..+|-.+|.++.- +..+..+..-...|+.-...+|-..++|..+....-
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l 193 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSL 193 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4567788889999999999999988763 222345556677777777888888899877664433
No 321
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=32.57 E-value=1e+02 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=32.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ak 368 (422)
.+++...||+.+|+|+.-+-+.+..|...|-|...
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999999999765
No 322
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=32.56 E-value=80 Score=22.04 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=25.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHh
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVV 361 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~ 361 (422)
+...|.+.+|+.+|+|+.-|...+.+...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48999999999999999999999887664
No 323
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=32.37 E-value=98 Score=25.52 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=37.7
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
....+++.|++.+|++..-+-..|..|...|-|.-..+..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 457899999999999999999999999999999988876554
No 324
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=32.22 E-value=41 Score=32.55 Aligned_cols=48 Identities=21% Similarity=0.130 Sum_probs=35.6
Q ss_pred HHHHHHH---HHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 319 QRIIEHN---ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 319 ~~viEhN---i~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
+.+..+| |....+ ...+|-..||+.+|+|..-+-+.+.+|+.+|-|.-
T Consensus 15 ~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 15 KSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp -------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3444444 344445 78899999999999999999999999999998853
No 325
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=32.19 E-value=94 Score=25.19 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=38.0
Q ss_pred hhcccc-cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEE
Q 014576 331 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 377 (422)
Q Consensus 331 k~Ys~I-sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~ 377 (422)
+|=+++ +...||+.||+|..-+-+.+..|..+|-|.. -+..|...
T Consensus 23 ~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V 68 (129)
T 2ek5_A 23 SIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFV 68 (129)
T ss_dssp CTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEE
Confidence 466788 9999999999999999999999999998854 45567544
No 326
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=32.03 E-value=91 Score=23.99 Aligned_cols=42 Identities=12% Similarity=-0.055 Sum_probs=37.2
Q ss_pred cccccHHHHHHHh-CCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
...+++..|++.+ |+++.-+-..|..|...|-|.-+.|..++
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4568999999999 59999999999999999999988876554
No 327
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=31.77 E-value=75 Score=25.41 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=32.5
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEE
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 367 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~a 367 (422)
.-..++++.||+.+|++..-+-+.+..|...|-|.-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 446799999999999999999999999999997764
No 328
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=31.69 E-value=78 Score=27.55 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=32.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEcc
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 380 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~ 380 (422)
.+|-+.||..+|++++-+-+.+.+|..+| | ..+ .|-|...+
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~~--~~~i~I~d 218 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TVK--RNHAEIED 218 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--ECC--TTEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Eee--CCEEEEcC
Confidence 35578999999999999999999999999 6 343 34444433
No 329
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=31.17 E-value=3.4e+02 Score=25.60 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 014576 10 TKKAVTEILQLCFEAKDWKTLNEQIVNLS 38 (422)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~l~~~i~~l~ 38 (422)
....+..+...+++.|+|+...+.+....
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl 250 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVL 250 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34456677888889999998877776533
No 330
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=31.01 E-value=2.8e+02 Score=24.71 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhc--cC----chH--HHHHHHHHH-HHHHhccCCHHHHHHHHHHhccccccCCCc
Q 014576 96 LAKIKEEQGLIAEAADLMQEVAVETFG--AM----AKT--EKIAFILEQ-VRLCLDRQDYVRAQILSRKISPRVFDADPS 166 (422)
Q Consensus 96 La~i~e~~g~~~eAa~iL~~l~vEt~~--~~----~~~--eK~e~~Le~-~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~ 166 (422)
|.+.++ .+|++.|.++|..+.++-.. .. +.. .-...++|+ ++++++.+|......+.......+.+..+
T Consensus 14 L~~~~~-~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~- 91 (229)
T 4b0z_A 14 LADLYD-RKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLV- 91 (229)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCC-
T ss_pred HHHHHH-hccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCC-
Confidence 444444 67999999999998876542 11 222 234455555 68899999999888888877776543211
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHH
Q 014576 167 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 213 (422)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea 213 (422)
+. ..+..|.-+...|+...++.-|-
T Consensus 92 --------------------~s--~~~~e~~~~~LL~lL~~~~~~ef 116 (229)
T 4b0z_A 92 --------------------PS--SRMGLVTGLNLLYLLSENRIAEF 116 (229)
T ss_dssp --------------------CC--TTHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------CC--ccHHHHHHHHHHHHHHcCCchHH
Confidence 00 12335666667777888877663
No 331
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=30.99 E-value=45 Score=28.56 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=35.6
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEcc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 380 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~ 380 (422)
--.++-+.||..+|++++-+-+.+++|..+|-|. ++ .|-|...+
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~--~~--~~~i~i~d 204 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVR--LG--PGTVEVRE 204 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--ec--CCEEEEeC
Confidence 4567899999999999999999999999999885 22 35555543
No 332
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=30.90 E-value=47 Score=28.91 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=31.0
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
--.++-+.||..+|++++-+-+.+++|..+|-|.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 3467899999999999999999999999999885
No 333
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.81 E-value=73 Score=21.47 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.6
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHh
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVV 361 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~ 361 (422)
++.-.+...+|+.+|+|+.-+...+.+...
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 567778999999999999999998887653
No 334
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=30.69 E-value=2.3e+02 Score=27.87 Aligned_cols=101 Identities=7% Similarity=0.079 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhccccccCCCcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 169 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~~~~~~~~~~ 169 (422)
..+...++.+++..|++++|..+++...- . ++..-...++.-+++....|++..|..++.++.... |.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~-~----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~~--- 388 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLA-I----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RT--- 388 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-S----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----TC---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhC-c----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----CC---
Confidence 45677889999999999999999887542 1 111112467777788888899999999999986531 11
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Q 014576 170 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 224 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~ 224 (422)
. ... |......-+...+++-+|...|..+....
T Consensus 389 ------------------~-~~~---~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 389 ------------------R-HHV---YVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp ------------------C-THH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ------------------c-hHH---HHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 0 011 11111111235788999999999887753
No 335
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=30.64 E-value=47 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=30.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
.++-+.||..+|++++-+-+.+++|..+|-|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 67899999999999999999999999999875
No 336
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=30.43 E-value=2e+02 Score=22.75 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=41.4
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHHHHHHHHHH
Q 014576 336 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDL 401 (422)
Q Consensus 336 Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~~I~~l~~~ 401 (422)
+..+.++...|+++++++..+..++..|.+..- +..++...|.. +.+..|...+...+..
T Consensus 18 ~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~~~l~~~L~~ 77 (135)
T 2v9v_A 18 LDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAIST-----ERYQAWWQAVTRALEE 77 (135)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEE-EETTEEEEEEH-----HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEE-ecCCCeEEecH-----HHHHHHHHHHHHHHHH
Confidence 444999999999999999999999999986543 33222212332 4666677666655543
No 337
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=30.36 E-value=43 Score=27.62 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.7
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHH
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDM 359 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~m 359 (422)
|=+.+++.+|..+|++++++|..+..+
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~i 63 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQKV 63 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 889999999999999999999988643
No 338
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=30.21 E-value=40 Score=27.38 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=31.4
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 336 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 336 Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
+|.+.||+.+|+|+..+-+.|..|+..|-|.=+-|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 89999999999999999999999999998765544
No 339
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=29.51 E-value=2.2e+02 Score=22.87 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=37.8
Q ss_pred cccccHHHHHHHh-CCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 333 YSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 333 Ys~Isl~~La~ll-~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
....++..|++.+ |++..-+=..|..|...|-|.-+.|..++
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 4578999999999 79999999999999999999988886555
No 340
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=29.25 E-value=51 Score=28.56 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=29.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
.++-+.||..+|++++-+-+.+++|..+|-|.
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999885
No 341
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=29.12 E-value=49 Score=24.83 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=30.8
Q ss_pred ccccHHHHHHHhCCCHH-HHHHHHHHHHhcCeEE
Q 014576 334 SRITLKRLAELLCLSIQ-EAEKHLSDMVVSKALV 366 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~-e~E~~ls~mI~~~~i~ 366 (422)
--.+-..||+.||+++. .|-+.|..|-.+|.+.
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 35789999999999999 9999999999999997
No 342
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.08 E-value=1.3e+02 Score=21.76 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=36.9
Q ss_pred ccccHHHHHHHh-----CCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEc
Q 014576 334 SRITLKRLAELL-----CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 379 (422)
Q Consensus 334 s~Isl~~La~ll-----~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~ 379 (422)
.-++.+.|++.+ ++|..-+-+.|..|...|.+. ++.-++|...|+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~-~~~~~~~~~~y~ 81 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT-RHNFEGGKSVFE 81 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE-EEECGGGCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE-EEeeCCCceEee
Confidence 358999999999 999999999999999999886 445555555553
No 343
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.78 E-value=2.4e+02 Score=31.52 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhc--c-Cc--------------hHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 014576 93 IKKLAKIKEEQGLIAEAADLMQEVAVETFG--A-MA--------------KTEKIAFILEQVRLCLDRQDYVRAQILSRK 155 (422)
Q Consensus 93 ~~~La~i~e~~g~~~eAa~iL~~l~vEt~~--~-~~--------------~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K 155 (422)
+..+|.++.+.|++++|+..++.--.-... . .. ..-...||+.+++|+=..+-+..+-.+++.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 588999999999999999988652110000 0 00 001236899999999888888888777777
Q ss_pred hccccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHH
Q 014576 156 ISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMP 235 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~ 235 (422)
+-...-. +..+++..++...-.++..-+.|-+|+..-...-+ ++.+..
T Consensus 925 Ai~~~~~-------------------------~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-------~~~r~~ 972 (1139)
T 4fhn_B 925 ADASKET-------------------------DDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-------TPLKKS 972 (1139)
T ss_dssp HHHHCCS-------------------------CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-------SSSCHH
T ss_pred HHHhccC-------------------------CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-------HHHHHH
Confidence 7432110 12344444555555777778888877666544433 124467
Q ss_pred HHHHHHH
Q 014576 236 VLRKICW 242 (422)
Q Consensus 236 ~L~~~v~ 242 (422)
||+..|.
T Consensus 973 cLr~LV~ 979 (1139)
T 4fhn_B 973 CLLDFVN 979 (1139)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 344
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.64 E-value=77 Score=22.49 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=24.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHH
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMV 360 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI 360 (422)
...|...+|+.+|+|+.-|...+.+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 789999999999999999988877654
No 345
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=28.34 E-value=54 Score=29.00 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=30.6
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
-.++-+.||..+|++++-+-+.+++|..+|-|.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 467889999999999999999999999999885
No 346
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=28.34 E-value=55 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=29.7
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKAL 365 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i 365 (422)
-.++-+.||+.+|+|++-+-+.+.+|..+|-|
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 197 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL 197 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE
Confidence 46889999999999999999999999999976
No 347
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=27.68 E-value=1.9e+02 Score=21.62 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=34.2
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccC
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRP 372 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~ 372 (422)
...++..||+.+|+|..-+-..|..|...|-+...-+..
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 358999999999999999999999999999998765433
No 348
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.61 E-value=1.6e+02 Score=20.76 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=26.3
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHh
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVV 361 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~ 361 (422)
++...+...+|+.+|+|+.-+...+.+...
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578889999999999999999988887654
No 349
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=27.56 E-value=2.1e+02 Score=22.00 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=34.0
Q ss_pred cccccHHHHHHHhC----CCHHHHHHHHHHHHhcCeEEEEec
Q 014576 333 YSRITLKRLAELLC----LSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 333 Ys~Isl~~La~ll~----ls~~e~E~~ls~mI~~~~i~akID 370 (422)
...++...||+.++ ++..-+=..|.+|+..|-|.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 45799999999999 889999999999999999976655
No 350
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=27.50 E-value=2.4e+02 Score=27.16 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccc
Q 014576 85 VEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV 160 (422)
Q Consensus 85 ~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~ 160 (422)
++..|..+...++..+.+.|++.+|...+..+... . +-.|. .+-..|+.+...|+...|-..++++....
T Consensus 166 l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~--P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 166 LVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--H--PYREP--LWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S--TTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C--CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44455666677888899999999999988886422 1 22343 56667999999999999999999887644
No 351
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.36 E-value=1.8e+02 Score=22.51 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRL 139 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL 139 (422)
.+|.-..-|+=+...|+|.+|.-++.++.-.|- .-...+-.+|+|+.-|=
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te-n~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSD-NEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc-CHHHHHHHHHHHHHHHH
Confidence 577778888889999999999999999875442 22334666789887653
No 352
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=27.08 E-value=80 Score=24.55 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=37.2
Q ss_pred hhcccc-cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEE
Q 014576 331 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 377 (422)
Q Consensus 331 k~Ys~I-sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~ 377 (422)
++=.++ +...||+.||+|..-+-+.+..|..+|.|...=.-..|+..
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 455667 99999999999999999999999999988664311346543
No 353
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=26.57 E-value=2.5e+02 Score=22.44 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhc-CCCCHHHHHHHHHHHHhhhcCcchHHH
Q 014576 10 TKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQ-YID-QTPDLDTRIELIKTLNSVSAGKIYVEI 87 (422)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~-~l~-~~~~~~~~~~li~tL~~~~~~ki~~E~ 87 (422)
...+...++..+...|+|+.-.+.+....+.....-.+. ...+.- +.. .....+.-...++......++.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----- 114 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY---AALATVLYYQASQHMTAQTRAMIDKALALDSNE----- 114 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHH---HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-----
Confidence 345667778888888888887777665442221111111 111111 111 1110022233344333333332
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 014576 88 ERARLIKKLAKIKEEQGLIAEAADLMQEVA 117 (422)
Q Consensus 88 era~l~~~La~i~e~~g~~~eAa~iL~~l~ 117 (422)
......||.++...|++++|...+....
T Consensus 115 --~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 115 --ITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3355678888888888888888887754
No 354
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=26.49 E-value=53 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
.++-+.||..+|++++-+-+.+.+|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47899999999999999999999999999764
No 355
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.46 E-value=89 Score=21.52 Aligned_cols=29 Identities=3% Similarity=-0.004 Sum_probs=25.1
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHH
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMV 360 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI 360 (422)
|+...|...+|+.+|+|+.-+...+.+..
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57889999999999999999888877654
No 356
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.18 E-value=2.9e+02 Score=23.07 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHhCCCChhhhHHhhhhhcccCCCCC
Q 014576 190 LELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEI 269 (422)
Q Consensus 190 ~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ILa~~~~~rs~ll~~~~~d~~~~~i 269 (422)
.+++-+.......|+. .+|.-||++|..|+-. |.-...+.+.+|..++=.+....| ++
T Consensus 6 eel~kki~~lL~EY~~-~~D~~EA~~cl~EL~~-------p~f~~e~V~~~i~~alE~~~~~~r-e~------------- 63 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLL-SGDISEAEHCLKELEV-------PHFHHELVYEAIVMVLESTGESAF-KM------------- 63 (152)
T ss_dssp CHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHTC-------GGGHHHHHHHHHHHHHHCCSSHHH-HH-------------
T ss_pred HHHHHHHHHHHHHHHh-CCCHHHHHHHHHHhCC-------CcchHHHHHHHHHHHHcCCChHHH-HH-------------
Confidence 4677777777767665 5899999999999864 223334555444443332222222 11
Q ss_pred hhHHHHHHHhcccccccchhhHHHHHHHhhhhhhhc-CCchhhhHHHHHHHHHHHHHHHHHhhhcccccHHHHHH
Q 014576 270 PNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNML-GGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAE 343 (422)
Q Consensus 270 p~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~-~d~~~~~~~~~L~~~viEhNi~~isk~Ys~Isl~~La~ 343 (422)
+..|+....+..++....+...|...+..-.++. +-|....++..+-.+.+..++ |+++.++.
T Consensus 64 --~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~---------l~~~~~~~ 127 (152)
T 2ion_A 64 --ILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGI---------ISKQLRDL 127 (152)
T ss_dssp --HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTC---------SCHHHHHT
T ss_pred --HHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCC---------CCHHHHHh
Confidence 2233333333455555555555666555322222 224455555555544444444 56666655
No 357
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=26.06 E-value=64 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=30.5
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHhcCe
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKA 364 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~ 364 (422)
+=...+++.+|+.-|+++..++.+|+.+|.+|.
T Consensus 29 ~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 29 IDRKVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 447789999999999999999999999999995
No 358
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.05 E-value=1e+02 Score=26.91 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=38.1
Q ss_pred cccHHHHHHHhCCCH-HHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHH
Q 014576 335 RITLKRLAELLCLSI-QEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM 393 (422)
Q Consensus 335 ~Isl~~La~ll~ls~-~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~ 393 (422)
.++-+.||..+|+++ +-+-+.+.+|..+|-|.-. .|-|...++ +.|..+..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~----~~~i~I~d~----~~L~~~~~ 220 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK----NSCFYVQNL----DYLKRYAP 220 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE----TTEEEESCH----HHHHHHCH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec----CCEEEEeCH----HHHHHHhc
Confidence 688899999999999 8999999999999987432 444555433 34555443
No 359
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=25.97 E-value=49 Score=21.58 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHH
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDM 359 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~m 359 (422)
.+++..+|..+|+++.++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4678899999999999887777664
No 360
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=25.58 E-value=56 Score=28.63 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=30.5
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
-.++-+.||+.+|++++-+-+.+.+|..+|-|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 468899999999999999999999999999875
No 361
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=25.56 E-value=51 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=23.4
Q ss_pred HHHHHHhCCCH---HHHHHHHHHHHhcCeEEEEec
Q 014576 339 KRLAELLCLSI---QEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 339 ~~La~ll~ls~---~e~E~~ls~mI~~~~i~akID 370 (422)
+||+..==+-| +.+|..|.+|...|+|.++||
T Consensus 23 eRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 23 SRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 34444333444 478999999999999999886
No 362
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=25.44 E-value=1.7e+02 Score=21.90 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=33.7
Q ss_pred HHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 326 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 326 i~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
|.++..-=+=++-..||+.+|++..++.+.+-+|=.+|+|.
T Consensus 25 Le~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 25 LQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 33444444567889999999999999999999999999864
No 363
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=25.32 E-value=82 Score=27.01 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhcccccHHHHHHHhC--CCHHHHHHHHHHHHhc----CeEEEEeccCCcEEEEccCCChHHHHH
Q 014576 319 QRIIEHNILVVSKYYSRITLKRLAELLC--LSIQEAEKHLSDMVVS----KALVAKIDRPQGIVCFQVAKDSNDILN 389 (422)
Q Consensus 319 ~~viEhNi~~isk~Ys~Isl~~La~ll~--ls~~e~E~~ls~mI~~----~~i~akIDq~~giV~F~~~~~~~~~l~ 389 (422)
.+++|--|.+..+| ++++.||+.++ +++++++..|.+|..+ ++ --.|=+.+|--.|..++.-.+.+.
T Consensus 9 ~~~iEAlLf~~~~p---vs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~r-g~~l~~v~~gy~l~t~~~~~~~v~ 81 (162)
T 1t6s_A 9 LRSLEALIFSSEEP---VNLQTLSQITAHKFTPSELQEAVDELNRDYEATGR-TFRIHAIAGGYRFLTEPEFADLVR 81 (162)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTC-SEEEEEETTEEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCC-CEEEEEECCEEEEEEcHHHHHHHH
Confidence 45677767666566 99999999999 9999999999998753 21 123444555556655443333333
No 364
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=25.23 E-value=54 Score=27.74 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=32.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCc
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 374 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~g 374 (422)
.++.+.||+.+|++..-+-..+.+|...|-|.-.-|..++
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 125 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDR 125 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-----
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCC
Confidence 4999999999999999999999999999999766554444
No 365
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=25.16 E-value=1.3e+02 Score=22.34 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=31.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEE
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ak 368 (422)
.++...||..||++-.++-+.|-.|-..|.+...
T Consensus 29 ~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 29 YTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp EECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 3899999999999999999999999999988764
No 366
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.07 E-value=92 Score=23.06 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=25.1
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHh
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVV 361 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~ 361 (422)
...|...+|+.+|+|+.-|...+.+...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998887653
No 367
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=24.94 E-value=4.7e+02 Score=25.15 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=11.4
Q ss_pred hccHHHHHHHHHHHhhc
Q 014576 207 NNDYLEICRCYKAIYEI 223 (422)
Q Consensus 207 ~~~y~ea~~~y~e~~~~ 223 (422)
.+++-+|...|..+.+.
T Consensus 164 ~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 56777777777766653
No 368
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=24.93 E-value=4.4e+02 Score=24.81 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHhhhc---CCCCHHHHHHHHHHHHhhhc----C
Q 014576 12 KAVTEILQLCFEAKDWKTLNEQIVNLSK---KRGQLKQAVTAMVQQAMQYID---QTPDLDTRIELIKTLNSVSA----G 81 (422)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~l~~~i~~l~k---~~~qlk~ai~~~v~~~~~~l~---~~~~~~~~~~li~tL~~~~~----~ 81 (422)
+....+..-|.++++|+..++.+..-+. ++||.-.+.. +.-.+++.+. ..++.+.+.++++.+..+.+ .
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~D-La~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r 112 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTD-LIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNL 112 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchH
Confidence 3344555566677888888887765554 3566544332 2222222221 22233444444444332211 1
Q ss_pred cchHHH-------------HHHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHHHhhcc---CchHHHHHHHH
Q 014576 82 KIYVEI-------------ERARLIKKLAKIKEEQGLIAEAAD-----------LMQEVAVETFGA---MAKTEKIAFIL 134 (422)
Q Consensus 82 ki~~E~-------------era~l~~~La~i~e~~g~~~eAa~-----------iL~~l~vEt~~~---~~~~eK~e~~L 134 (422)
+-|+.. ---.+-..+|..|..+|++.+|-. .+.++.+|++.. -.+.+.--|+.
T Consensus 113 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~ 192 (312)
T 2wpv_A 113 KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS 192 (312)
T ss_dssp HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 112210 014578889999999999998865 467777777754 44566666666
Q ss_pred HHHHHHhccCCHHHHHHHHH
Q 014576 135 EQVRLCLDRQDYVRAQILSR 154 (422)
Q Consensus 135 e~~rL~l~~~D~~~a~~~~~ 154 (422)
+-+=-||..++..-|.....
T Consensus 193 RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 66666888888888776544
No 369
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=24.93 E-value=54 Score=24.81 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=34.6
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHH----HHHHHHHHHHHHHh
Q 014576 337 TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM----NLEKLLDLVEKSCH 407 (422)
Q Consensus 337 sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~----~I~~l~~~v~k~~~ 407 (422)
.-..||+.||++..+++.+-.. +.++...|+.|.. .+++|+..+.++.+
T Consensus 23 dW~~LA~~Lg~~~~~I~~~~~~----------------------~~pt~~lL~~W~~r~~atv~~L~~aL~~igR 75 (85)
T 1ngr_A 23 TWRHLAGELGYQPEHIDSFTHE----------------------ACPVRALLASWGAQDSATLDALLAALRRIQR 75 (85)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHS----------------------SCHHHHHHHHGGGSTTCBHHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCCHHHHHHHHcC----------------------CCHHHHHHHHHHhCCCCCHHHHHHHHHHcCc
Confidence 3467999999998888776431 2345688999976 37777777766543
No 370
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.73 E-value=2.7e+02 Score=22.36 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Q 014576 190 LELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 222 (422)
Q Consensus 190 ~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~ 222 (422)
.+++-+.......|+. .+|.-||++|..|+..
T Consensus 4 eel~kki~~ll~EY~~-~~D~~Ea~~cl~eL~~ 35 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLL-SGDISEAEHCLKELEV 35 (129)
T ss_dssp CHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhCC
Confidence 3666677777667664 5899999999999863
No 371
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.54 E-value=2e+02 Score=22.99 Aligned_cols=30 Identities=7% Similarity=0.233 Sum_probs=26.6
Q ss_pred hhcccccHHHHHHHhCCCHHHHHHHHHHHH
Q 014576 331 KYYSRITLKRLAELLCLSIQEAEKHLSDMV 360 (422)
Q Consensus 331 k~Ys~Isl~~La~ll~ls~~e~E~~ls~mI 360 (422)
.++...|...+|+.+|+|+.-|...+.+..
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 588999999999999999999988877654
No 372
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.43 E-value=75 Score=19.77 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=22.2
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHH
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDM 359 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~m 359 (422)
....+...+|+.+|+|..-+.+.+.+.
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 456799999999999999888876543
No 373
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=24.32 E-value=79 Score=28.54 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhc----CeEEEEeccCCcEEEEccCCC
Q 014576 319 QRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVS----KALVAKIDRPQGIVCFQVAKD 383 (422)
Q Consensus 319 ~~viEhNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~----~~i~akIDq~~giV~F~~~~~ 383 (422)
++++|--|.+..+| ++++.||+.+++++++++..|.+|..+ ++ --.|=+.+|--.|..++.
T Consensus 17 ~~~iEAlLf~a~ep---vs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~r-Giel~~v~~gy~l~T~~e 81 (219)
T 2z99_A 17 KRVLEALLLVIDTP---VTADALAAATEQPVYRVAAKLQLMADELTGRDS-GIDLRHTSEGWRMYTRAR 81 (219)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC-SEEEEEETTEEEEEECGG
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCC-CEEEEEECCEEEEEEcHH
Confidence 56788777777777 999999999999999999999998753 22 123444556556655443
No 374
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.80 E-value=1.3e+02 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=26.0
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHh
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMVV 361 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~ 361 (422)
++.-.+...+|+.+|+|+.-|...+.+...
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999999998887653
No 375
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=23.80 E-value=37 Score=26.13 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=36.2
Q ss_pred hcccc-cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEE
Q 014576 332 YYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 377 (422)
Q Consensus 332 ~Ys~I-sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~ 377 (422)
+=..+ +...||+.+|+|..-+-+.+..|..+|-|..+ +..|+..
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v 75 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVV 75 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEES
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEE
Confidence 44677 99999999999999999999999999988653 4456543
No 376
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=23.78 E-value=71 Score=28.65 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=30.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEE
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 366 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ 366 (422)
.++-+.||..+|++++-+-+.+++|..+|-|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 67889999999999999999999999999875
No 377
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.55 E-value=1e+02 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=26.1
Q ss_pred hhcccccHHHHHHHhCCCHHHHHHHHHHHH
Q 014576 331 KYYSRITLKRLAELLCLSIQEAEKHLSDMV 360 (422)
Q Consensus 331 k~Ys~Isl~~La~ll~ls~~e~E~~ls~mI 360 (422)
.||.-.|...+|+.+|+|+.-|...+.+..
T Consensus 49 ~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 49 SYYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 478899999999999999999988877654
No 378
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.47 E-value=1.3e+02 Score=20.90 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.6
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHH
Q 014576 332 YYSRITLKRLAELLCLSIQEAEKHLSDMV 360 (422)
Q Consensus 332 ~Ys~Isl~~La~ll~ls~~e~E~~ls~mI 360 (422)
++...+...+|+.+|+|+.-+...+.+..
T Consensus 23 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667999999999999999998888755
No 379
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=23.44 E-value=2.7e+02 Score=25.78 Aligned_cols=136 Identities=8% Similarity=-0.044 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhcCcchHHHHH
Q 014576 10 TKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIER 89 (422)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~~ki~~E~er 89 (422)
-..+-...+.++...|+|+.-.+.+..+.-... ... ...+.-.+-+- ..+.+ ..+..+..... .--....
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~-~~~~~a~l~~~--~~r~~---dA~~~l~~a~~--~~d~~~~ 170 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHL-VAWMKAVVYGA--AERWT---DVIDQVKSAGK--WPDKFLA 170 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHH-HHHHHHHHHHH--TTCHH---HHHHHHTTGGG--CSCHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chH-HHHHHHHHHHH--cCCHH---HHHHHHHHhhc--cCCcccH
Confidence 345566677888888999998888865432111 111 11111111111 11111 12222221111 1011123
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 158 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~ 158 (422)
......|+..++..|++++|...++... .+..++..-.+.++.+...+...|+...|...++++..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~---~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEAN---DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHh---cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5578999999999999999999999754 13322444778888899999999999999999999865
No 380
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=22.35 E-value=5.4e+02 Score=24.97 Aligned_cols=69 Identities=6% Similarity=-0.010 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccc
Q 014576 90 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV 160 (422)
Q Consensus 90 a~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~ 160 (422)
..+-..++.++...|++++|..+++...- ....++.....++..-+++....||...+..+.+|+...+
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~--~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLT--SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHH--SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667788888888999999988887432 1234555566677777777777899999988888886643
No 381
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.22 E-value=2.9e+02 Score=21.80 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=36.3
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEc
Q 014576 333 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 379 (422)
Q Consensus 333 Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~ 379 (422)
...++.+.||+.+|+|+.-+-+.+..|...|-|.-. +.+.+...
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEc
Confidence 356999999999999999999999999999988654 34555554
No 382
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=22.12 E-value=77 Score=31.51 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 014576 187 PSLLELKRIYYELMIRYYSHNNDYLEICRCYK 218 (422)
Q Consensus 187 ~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~ 218 (422)
...+|+.++|...+...|...++|.||+.|+.
T Consensus 4 ~~~pdl~~~wl~~La~~h~~~~n~~EAa~cl~ 35 (428)
T 2wm9_A 4 ASTPELRKTWLDSMARIHVKNGDLSEAAMCYV 35 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35579999999999999999999999999986
No 383
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=21.90 E-value=1.9e+02 Score=19.45 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=32.9
Q ss_pred ccccHHHHHHHh-----CCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEc
Q 014576 334 SRITLKRLAELL-----CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 379 (422)
Q Consensus 334 s~Isl~~La~ll-----~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~ 379 (422)
..+|.+.|++.| ++|..-+-+.|.++ |.+ ++..++|...|.
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v--~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV--KVPTNNGSYKYS 63 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE--EEEETTTEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE--EEecCCCceeee
Confidence 568999999999 99999999988844 655 777777876663
No 384
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=21.33 E-value=3.2e+02 Score=21.83 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=47.7
Q ss_pred hCCCHHHHHHHHHHHHhcCeEEEEeccCCc--EEEEccCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 014576 345 LCLSIQEAEKHLSDMVVSKALVAKIDRPQG--IVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQ 408 (422)
Q Consensus 345 l~ls~~e~E~~ls~mI~~~~i~akIDq~~g--iV~F~~~~~~~~~l~~W~~~I~~l~~~v~k~~~l 408 (422)
+++++--+-..|.+|..+|-|...-+..+| -..|.=....-+.+..|......+...++++-.-
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~~~~~~~~i~~il~~ 113 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQWHVLCDGVGKLLET 113 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 689999999999999999999887643222 2333323334578999999999998888876543
No 385
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=21.14 E-value=2.6e+02 Score=23.13 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=33.8
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
...+...||+.+|++..-+-..|..|...|-|...-|
T Consensus 70 ~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~ 106 (151)
T 3f6v_A 70 GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD 106 (151)
T ss_dssp CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 5689999999999999999999999999999987643
No 386
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.06 E-value=1.4e+02 Score=23.13 Aligned_cols=28 Identities=7% Similarity=0.110 Sum_probs=23.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHh
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVV 361 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~ 361 (422)
...|++.+|+.+|+|+.-|...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6799999999999999988888766543
No 387
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.95 E-value=5.8e+02 Score=24.72 Aligned_cols=128 Identities=14% Similarity=0.002 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHhhhcCCCCHHHHHHHHHHHHhhh-cCcchHHHH
Q 014576 13 AVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVT---AMVQQAMQYIDQTPDLDTRIELIKTLNSVS-AGKIYVEIE 88 (422)
Q Consensus 13 ~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~---~~v~~~~~~l~~~~~~~~~~~li~tL~~~~-~~ki~~E~e 88 (422)
+...+++++++.|+++...+.+..+...-...+..+. ..|+.++. ..|...-...+.....+. ++. . ..-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~----~~d~~~~~~~~~ka~~~~~~~~-d-~~~ 206 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF----YNDQLYVKEKLEAVNSMIEKGG-D-WER 206 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTCC-C-THH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhhcCC-C-HHH
Confidence 4456778888888888887777655433222222221 22222221 112211122233222211 111 1 123
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHH
Q 014576 89 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYV 147 (422)
Q Consensus 89 ra~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~ 147 (422)
+.++...-+.++...++|.+|++.+-++. +|+...+.-...++.+--+=+++...+..
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~-~t~~~~e~~~~~~~~~y~~l~al~~~~r~ 264 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSL-ATFTSIELTSYESIATYASVTGLFTLERT 264 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHH-HHSCCSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHh-ccCCccchhhHHHHHHHHHHHHHhcCCHH
Confidence 56777777888889999999999998874 67765555555555555555555555543
No 388
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=20.81 E-value=2.9e+02 Score=21.18 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=31.6
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEE
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ak 368 (422)
..+++..+|+.+|+|..-+-+.|..|...|-+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 36899999999999999999999999999987543
No 389
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=20.81 E-value=91 Score=30.20 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHh-hhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEE
Q 014576 314 AEDLRQRIIEHNILVVS-KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 368 (422)
Q Consensus 314 ~~~L~~~viEhNi~~is-k~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~ak 368 (422)
.+.++..+.++...-.. +||-..+...+|+++|+|+..++..+.+|-..|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (403)
T 3ez9_A 21 LKAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNK 76 (403)
T ss_dssp GGGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCE
T ss_pred HHHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCc
Confidence 35566777777765555 78999999999999999999999999988878777666
No 390
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=20.72 E-value=2.7e+02 Score=24.98 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=39.4
Q ss_pred hhhcccc-cHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEE
Q 014576 330 SKYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 377 (422)
Q Consensus 330 sk~Ys~I-sl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~ 377 (422)
-++=+++ +-..||+.+|+|..-+-+-+..|+.+|-|.. +..|...
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V 75 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVV 75 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEE
Confidence 4566889 9999999999999999999999999998876 7778644
No 391
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=20.58 E-value=1.5e+02 Score=29.65 Aligned_cols=92 Identities=15% Similarity=0.236 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh---------hhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhh----
Q 014576 13 AVTEILQLCFEAKDWKTLNEQIVNLS---------KKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVS---- 79 (422)
Q Consensus 13 ~~~~i~~~~~~~~~~~~l~~~i~~l~---------k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~---- 79 (422)
....|++.|++.|.|+.-...+...+ -+-|+...||....+ ..+..+...++.+.....
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~K--------A~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK--------ANSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp -------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHH--------HTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHH--------cCCchhHHHHHHHHHHcCcHHH
Confidence 66778888888888888777765433 234444444433222 134445455555444221
Q ss_pred ----cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 014576 80 ----AGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQE 115 (422)
Q Consensus 80 ----~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~ 115 (422)
.-.|-+..+. -..++.+|+..|.|++|+..|..
T Consensus 196 A~~~~l~L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 196 AQMCGLHIVVHADE---LEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHTTTTTTTCHHH---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCHhh---HHHHHHHHHHCCCHHHHHHHHHH
Confidence 1122111111 22588999999999999998876
No 392
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=20.42 E-value=1.7e+02 Score=22.20 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHH
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSD 358 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~ 358 (422)
..++++.||+.+|+|+....+...+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5899999999999999877776544
No 393
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.27 E-value=1.7e+02 Score=21.93 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=20.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHH
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDM 359 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~m 359 (422)
.++++.||+.+|+|+..+.+...+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999998877765543
No 394
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=20.25 E-value=5.8e+02 Score=24.46 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHhcc
Q 014576 91 RLIKKLAKIKEE----QGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLD----RQDYVRAQILSRKISP 158 (422)
Q Consensus 91 ~l~~~La~i~e~----~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~----~~D~~~a~~~~~K~~~ 158 (422)
.....|+.+|.. .+++++|...++... +. + -.+-+.....+|.. .+|+.+|..+++|+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~-~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQ-G------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT-T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC-C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 345668888888 788888888777632 11 1 12334445555665 6778888877777743
No 395
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=20.17 E-value=1.8e+02 Score=21.88 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=35.3
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccC
Q 014576 334 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVA 381 (422)
Q Consensus 334 s~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~ 381 (422)
...+...||+.+|+|..-+-..+..|... -+..+-+ .+-+.|.-.
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~--gr~~~y~l~ 84 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ--GLEIYYSIN 84 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE--TTEEEEECC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe--CcEEEEEEC
Confidence 45899999999999999999999999998 7766543 334555433
No 396
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=20.09 E-value=2.3e+02 Score=22.04 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=32.2
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEec
Q 014576 335 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 370 (422)
Q Consensus 335 ~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akID 370 (422)
..+...||+.+|+|..-+-+.|..|...|-+...-|
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 468899999999999999999999999999977644
No 397
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=20.03 E-value=4.5e+02 Score=28.10 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHhccc
Q 014576 129 KIAFILEQVRLCLDRQDYVRAQILSRKISPR 159 (422)
Q Consensus 129 K~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~ 159 (422)
..+++..|++.++.++||.-|-.+++++-..
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~ 366 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTEL 366 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Confidence 4568889999999999999999999998553
Done!