BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014577
(422 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/413 (84%), Positives = 389/413 (94%), Gaps = 1/413 (0%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KVK+YAS+A IEVFSPVSHTLFNPADIIQKNGGKPPL+YQSFLK+AGQP WASSPLP ++
Sbjct: 124 KVKEYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPSWASSPLPTTI 183
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
SSLPPVGDVG EISEVPT+EELGY Q+E +PFRGGESEALK+LRE I++KEWVANF
Sbjct: 184 SSLPPVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESEALKRLREKITNKEWVANF 243
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA++KPATTVLSPYLKFGCLSSRYFYQCL DVY+NV KHTSPPVSL+GQLLWR
Sbjct: 244 EKPKGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVGKHTSPPVSLLGQLLWR 303
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTVAFGTPNFD+MK NRICKQIPW+ DDELL+AWREARTGYPWIDAIMVQLRKWGWM
Sbjct: 304 DFFYTVAFGTPNFDQMKENRICKQIPWNEDDELLSAWREARTGYPWIDAIMVQLRKWGWM 363
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARHCVACFLTRGD+FVHWEKGR+VF+RLLIDSDWAINNGNWLWLSCSSFFYQYNRIY
Sbjct: 364 HHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 423
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP+SFGKKYDPNGNYI+HFLPVLKDMPKEYIYEPWTAPL++QT+AKCIIGRDYP PVV+H
Sbjct: 424 SPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEPWTAPLSVQTKAKCIIGRDYPKPVVAH 483
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQE-SGRRQKQK 413
DSASKECK+KL E+YALNQKLNG++ E+ L+NLRRK E +++QE G+RQ+ K
Sbjct: 484 DSASKECKKKLAESYALNQKLNGKLGEEDLRNLRRKLEQDQDQEHKGKRQRLK 536
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera]
Length = 564
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/417 (83%), Positives = 384/417 (92%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVK+YAS AGIEVFSPVSHTLF+ A+IIQKNGG+PPL+YQSFLKLAGQP WASSPL +
Sbjct: 148 IKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFLKLAGQPSWASSPLLTT 207
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
LS LPPVGDVG EIS VPTV+ELGY+ GQ+E +PF+GGESEALK+LRESI DKEWVAN
Sbjct: 208 LSWLPPVGDVGTCEISNVPTVKELGYEEIGQDESTPFKGGESEALKRLRESIRDKEWVAN 267
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFYQCLTDVY+N+K HTSPPVSLVGQLLW
Sbjct: 268 FEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNMKWHTSPPVSLVGQLLW 327
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
RDFFYTV FGTPNFDRMKGNRICKQIPW++DDELLAAWREARTGYPWIDAIMVQLRKWGW
Sbjct: 328 RDFFYTVGFGTPNFDRMKGNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGW 387
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARHCVACFLTRGD+FVHWEKGRDVF+RLLIDSDWAINNGNWLWLSCSSFFYQYNRI
Sbjct: 388 MHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRI 447
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP+SFGKKYDPNGNYIRHFLP+LKDMPKEYIYEPWTAP +IQ +AKCIIG+DYP PVV
Sbjct: 448 YSPISFGKKYDPNGNYIRHFLPILKDMPKEYIYEPWTAPPSIQAKAKCIIGKDYPKPVVC 507
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLTG 417
HDSA KECKRKL EAYALN++L+G V+E+ LK LRRK E +EN ES + ++ L G
Sbjct: 508 HDSAIKECKRKLAEAYALNKRLDGSVTEEDLKKLRRKLEEDENPESNTSRTRQKLIG 564
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/417 (83%), Positives = 384/417 (92%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVK+YAS AGIEVFSPVSHTLF+ A+IIQKNGG+PPL+YQSFLKLAGQP WASSPL +
Sbjct: 122 IKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFLKLAGQPSWASSPLLTT 181
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
LS LPPVGDVG EIS VPTV+ELGY+ GQ+E +PF+GGESEALK+LRESI DKEWVAN
Sbjct: 182 LSWLPPVGDVGTCEISNVPTVKELGYEEIGQDESTPFKGGESEALKRLRESIRDKEWVAN 241
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFYQCLTDVY+N+K HTSPPVSLVGQLLW
Sbjct: 242 FEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNMKWHTSPPVSLVGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
RDFFYTV FGTPNFDRMKGNRICKQIPW++DDELLAAWREARTGYPWIDAIMVQLRKWGW
Sbjct: 302 RDFFYTVGFGTPNFDRMKGNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARHCVACFLTRGD+FVHWEKGRDVF+RLLIDSDWAINNGNWLWLSCSSFFYQYNRI
Sbjct: 362 MHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRI 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP+SFGKKYDPNGNYIRHFLP+LKDMPKEYIYEPWTAP +IQ +AKCIIG+DYP PVV
Sbjct: 422 YSPISFGKKYDPNGNYIRHFLPILKDMPKEYIYEPWTAPPSIQAKAKCIIGKDYPKPVVC 481
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLTG 417
HDSA KECKRKL EAYALN++L+G V+E+ LK LRRK E +EN ES + ++ L G
Sbjct: 482 HDSAIKECKRKLAEAYALNKRLDGSVTEEDLKKLRRKLEEDENPESNTSRTRQKLIG 538
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/415 (84%), Positives = 387/415 (93%), Gaps = 2/415 (0%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
++VK+YAS AGIEVFSPVSHTLFNPADIIQ+NGGKPPLTYQSFLKLAGQP WASSPL S
Sbjct: 123 IRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQPSWASSPLLTS 182
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+SSLPPVGDVG EISEVPT+++LGY G ++E PFRGGESEALK+L+ESISDKEWVAN
Sbjct: 183 ISSLPPVGDVGSCEISEVPTIKDLGY-GDIEQEWIPFRGGESEALKRLKESISDKEWVAN 241
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKG+PSA++KPATTVLSPYLKFGCLSSRYFYQCL DVY+NV+KHTSPPVSL GQLLW
Sbjct: 242 FEKPKGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVQKHTSPPVSLAGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
RDFFYTVAFGTPNFDRM+GN++CKQIPW++DDELLAAWREARTGYPWIDAIMVQLRKWGW
Sbjct: 302 RDFFYTVAFGTPNFDRMEGNKLCKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARH VACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNWLWLSCSSFFYQYNRI
Sbjct: 362 MHHLARHSVACFLTRGDLFLHWERGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRI 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP+SFGKKYDPNG+YIRHFLPVLKDMPKEYIYEPWTAP IQ +AKCIIGRDYP PVV
Sbjct: 422 YSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPPGIQRKAKCIIGRDYPKPVVY 481
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESG-RRQKQKT 414
HDSASKECKRKL EAYALN+KLNGQ+S++ L NLRRK E +E+QE RRQ+QK
Sbjct: 482 HDSASKECKRKLAEAYALNKKLNGQLSQEDLDNLRRKLEQDEDQEPKIRRQRQKV 536
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
Length = 536
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/414 (85%), Positives = 388/414 (93%), Gaps = 1/414 (0%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVKD+AS+ GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK+AG+P WASSPL +S
Sbjct: 122 VKVKDFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKVAGEPSWASSPLSIS 181
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+SSLPPVGDVG EISEVPTVEELGY Q+E +PFRGGESEALK LRESI DKEW+AN
Sbjct: 182 ISSLPPVGDVGSCEISEVPTVEELGYGDVEQDEWTPFRGGESEALKSLRESIKDKEWIAN 241
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDPSA++KPATTVLSPYLKFGCLSSRYF+QCL DVY+NVKKHTSPPVSLVGQLLW
Sbjct: 242 FEKPKGDPSAFVKPATTVLSPYLKFGCLSSRYFFQCLQDVYRNVKKHTSPPVSLVGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
RDFFYTVAFGTPNFD+MK NRICKQIPW+ D ELLAAWR+ARTGYPWIDAIMVQLRKWGW
Sbjct: 302 RDFFYTVAFGTPNFDQMKDNRICKQIPWNEDTELLAAWRDARTGYPWIDAIMVQLRKWGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARHCVACFLTRGD+FVHWEKGRDVF+RLLIDSDWAINNGNWLWLSCSSFFYQYNRI
Sbjct: 362 MHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRI 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP+SFGKKYDPNGNYIRHFLPVLKDMPKE+IYEPWTAPL++QT+AKCIIGRDYP PVVS
Sbjct: 422 YSPISFGKKYDPNGNYIRHFLPVLKDMPKEFIYEPWTAPLSVQTKAKCIIGRDYPKPVVS 481
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESG-RRQKQK 413
HDSASKECKRKL EAYALNQKLNGQ++E+ L NL+RK + +++QE RQKQK
Sbjct: 482 HDSASKECKRKLAEAYALNQKLNGQLTEEDLGNLKRKLQQDQDQERKITRQKQK 535
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
Length = 537
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/415 (76%), Positives = 377/415 (90%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVKDYAS+ G+EVFSPVSHTLFNPA II+KNGGKPPL+YQSFLK+AG+P A S L +S
Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 181
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
SSLPP+GD+G ISEVP++EELGYK Q + +PFRGGESEALK+L +SISDK WVAN
Sbjct: 182 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 241
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLLW
Sbjct: 242 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT AFGTPNFD+MKGNRICKQIPW+ D +LAAWR+ +TGYPWIDAIMVQL KWGW
Sbjct: 302 REFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ+NRI
Sbjct: 362 MHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRI 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP+SFGKKYDP+G YIRHFLPVLKDMPK+YIYEPWTAPL++QT+A CI+G+DYP P+V
Sbjct: 422 YSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVL 481
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
HDSASKECKRK+GEAYALN+K++G+V E+ L++LRRK + +E++ES R ++ L
Sbjct: 482 HDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPKL 536
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/421 (75%), Positives = 383/421 (90%), Gaps = 1/421 (0%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
++V+++AS AGIEVFSPVSHTLFNPADIIQKNGG PPL+YQSFLKLAG+P WA +PL +
Sbjct: 122 IRVQNHASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFLKLAGEPSWACAPLSTT 181
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+SSLPPVGD G EIS+VPT+++LGY+ +++ +PFRGGE+EALK+L+ES+S+K+WVA
Sbjct: 182 VSSLPPVGDTGRSEISDVPTIKDLGYEDMAKDDWTPFRGGETEALKRLKESMSNKDWVAK 241
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFYQC+ ++Y+NVK HTSPPVSLVGQLLW
Sbjct: 242 FEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCIQEIYKNVKGHTSPPVSLVGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT AFGTPNFDRMK N+ICKQIPW++D+ELLAAWR+ARTG+PWIDAIMVQLRKWGW
Sbjct: 302 REFFYTAAFGTPNFDRMKDNKICKQIPWNDDNELLAAWRDARTGFPWIDAIMVQLRKWGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARHCVACFLTRGD+FVHWEKGRDVF+RLLIDSDWAINN NWLWLSCSSFFYQYNR+
Sbjct: 362 MHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNANWLWLSCSSFFYQYNRV 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP++FGKKYDPNG++IRHFLPVLKDMPK+YIYEPWTAPL+IQ +AKCIIG DYP PVVS
Sbjct: 422 YSPITFGKKYDPNGDFIRHFLPVLKDMPKQYIYEPWTAPLSIQKKAKCIIGEDYPKPVVS 481
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNL-RRKFEGEENQESGRRQKQKTLTGWL 419
HD A KEC++K+GEAY LN++L G +S++ L+NL +R E ++ Q + ++K++TL W+
Sbjct: 482 HDIAIKECRKKMGEAYELNKRLKGLISDEDLENLKKRNSEEDQRQNAQTKRKRQTLIDWI 541
Query: 420 K 420
+
Sbjct: 542 Q 542
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/415 (76%), Positives = 377/415 (90%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVKDYAS+ G+EVFSPVSHTLFNPA II+KNGGKPPL+YQSFLK+AG+P A S L +S
Sbjct: 141 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 200
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
SSLPP+GD+G ISEVP++EELGYK Q + +PFRGGESEALK+L +SISDK WVAN
Sbjct: 201 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 260
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLLW
Sbjct: 261 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLW 320
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT AFGTPNFD+MKGNRICKQIPW+ D +LAAWR+ +TGYPWIDAIMVQL KWGW
Sbjct: 321 REFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGW 380
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ+NRI
Sbjct: 381 MHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRI 440
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP+SFGKKYDP+G YIRHFLPVLKDMPK+YIYEPWTAPL++QT+A CI+G+DYP P+V
Sbjct: 441 YSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVL 500
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
HDSASKECKRK+GEAYALN+K++G+V E+ L++LRRK + +E++ES R ++ L
Sbjct: 501 HDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPKL 555
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max]
Length = 535
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/417 (77%), Positives = 371/417 (88%), Gaps = 3/417 (0%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVK++A AGIEVFSPVSHTLFNP DII+KNGGKPPL+YQSF+KLAG+P S L
Sbjct: 122 VKVKNFALAAGIEVFSPVSHTLFNPTDIIEKNGGKPPLSYQSFVKLAGEP---PSSLSTV 178
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
SSLPPVG++G +ISEVPT+ +LGY Q+E SPF+GGESEALK+L E + DK+WVAN
Sbjct: 179 YSSLPPVGNLGSCDISEVPTIRDLGYGDAEQDEFSPFKGGESEALKRLDECMKDKKWVAN 238
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKG+PSA+LKPATTVLSPYLKFGCLS RYFYQ + DVY+++ KHT PPVSL+GQLLW
Sbjct: 239 FEKPKGNPSAFLKPATTVLSPYLKFGCLSPRYFYQSIQDVYKSMPKHTLPPVSLIGQLLW 298
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT AFGTPNFDRMKGNRICKQIPW +DD+LL AWREARTG+PWIDAIMVQLRKWGW
Sbjct: 299 REFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMVQLRKWGW 358
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARH VACFLTRGD+FVHWEKGRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQYNRI
Sbjct: 359 MHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRI 418
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP +FGKKYDPNG+YIRHFLPVLKDMP+EYIYEPWTAP +IQT+A CIIG+DYP PVVS
Sbjct: 419 YSPTTFGKKYDPNGDYIRHFLPVLKDMPREYIYEPWTAPKSIQTKANCIIGKDYPMPVVS 478
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLTG 417
HDSASKEC+RK+GEAYALN++LNG VSED LKNLRRK + E QE+G ++ ++ L G
Sbjct: 479 HDSASKECRRKMGEAYALNKELNGLVSEDDLKNLRRKLDESEGQEAGAKRYKQQLIG 535
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 549
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/426 (74%), Positives = 382/426 (89%), Gaps = 6/426 (1%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
++V+++AS AGIEVFSPVSHTLFNPADIIQKNGG PPL+YQSFLKLAG+P WA +PL +
Sbjct: 122 IRVQNHASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFLKLAGEPSWACAPLSTT 181
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS-----DK 115
+SSLPPVGD G EIS+VPT+++LGY+ +++ +PFRGGE+EALK+L+ES+S +
Sbjct: 182 VSSLPPVGDTGRSEISDVPTIKDLGYEDMAKDDWTPFRGGETEALKRLKESMSFLIGSLQ 241
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+WVA FEKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFYQC+ ++Y+NVK HTSPPVSLV
Sbjct: 242 DWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCIQEIYKNVKGHTSPPVSLV 301
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYT AFGTPNFDRMK N+ICKQIPW++D+ELLAAWR+ARTG+PWIDAIMVQL
Sbjct: 302 GQLLWREFFYTAAFGTPNFDRMKDNKICKQIPWNDDNELLAAWRDARTGFPWIDAIMVQL 361
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
RKWGWMHHLARHCVACFLTRGD+FVHWEKGRDVF+RLLIDSDWAINN NWLWLSCSSFFY
Sbjct: 362 RKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNANWLWLSCSSFFY 421
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QYNR+YSP++FGKKYDPNG++IRHFLPVLKDMPK+YIYEPWTAPL+IQ +AKCIIG DYP
Sbjct: 422 QYNRVYSPITFGKKYDPNGDFIRHFLPVLKDMPKQYIYEPWTAPLSIQKKAKCIIGEDYP 481
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNL-RRKFEGEENQESGRRQKQKT 414
PVVSHD A KEC++K+GEAY LN++L G +S++ L+NL +R E ++ Q + ++K++T
Sbjct: 482 KPVVSHDIAIKECRKKMGEAYELNKRLKGLISDEDLENLKKRNSEEDQRQNAQTKRKRQT 541
Query: 415 LTGWLK 420
L W++
Sbjct: 542 LIDWIQ 547
>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
Length = 633
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/414 (78%), Positives = 354/414 (85%), Gaps = 28/414 (6%)
Query: 4 KDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS 63
K+YAS AGIEVFSPVSHTLF+ ADIIQKNGG+PPL+YQSFLKLAGQP WASSPL +LS
Sbjct: 248 KNYASAAGIEVFSPVSHTLFDSADIIQKNGGRPPLSYQSFLKLAGQPSWASSPLSTTLSW 307
Query: 64 LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEK 123
LPPVGDVG EIS VPTV+ELGY+ GQ+EL+PF+GGESEALK+LRESI DK+WVANFEK
Sbjct: 308 LPPVGDVGTCEISNVPTVKELGYEEIGQDELTPFKGGESEALKRLRESIRDKDWVANFEK 367
Query: 124 PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDF 183
PKGDPSA+LKPATTVLSPYLKFGCLSSRYFYQCLTDVY+NVK+HTSPPVSLVGQLLWRDF
Sbjct: 368 PKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNVKRHTSPPVSLVGQLLWRDF 427
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
FYTV FGTPNFDRMKGNRICKQIPW++DDELLAAWREARTGYPWIDAIMVQLRKWGWMHH
Sbjct: 428 FYTVGFGTPNFDRMKGNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 487
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
LARHCVACFLTRGD+FVHWEKGRDVF+RLLIDSDWAINNGNWLWLSCSSFFYQ
Sbjct: 488 LARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQ------- 540
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
DMPKEYIYEPWTAP +IQ +AKCIIG+DYP PVV HDS
Sbjct: 541 ---------------------PDMPKEYIYEPWTAPPSIQXKAKCIIGKDYPKPVVCHDS 579
Query: 364 ASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLTG 417
A KECKRKL EAYALN++L+G V+E+ LK LRRK E +EN ES + ++ L G
Sbjct: 580 AXKECKRKLAEAYALNKRLDGSVTEEDLKKLRRKLEEDENXESNTSRTRQKLIG 633
>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/424 (73%), Positives = 369/424 (87%), Gaps = 9/424 (2%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVKDYAS+ G+EVFSPVSHTLFNPAD+I+KNGGKPPL+YQSFLK+AG+P A S L +S
Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFLKIAGEPSCAKSELVMS 181
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYG-QEELSPFRGGESEALKKLRESISDKEWVA 119
SSLPPVGDVG ISEVP++EELGY+ Q + +PFRGGESEALK+L +SISDK WVA
Sbjct: 182 YSSLPPVGDVGNLGISEVPSLEELGYRDDDEQADWTPFRGGESEALKRLTKSISDKAWVA 241
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
NFEKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLL
Sbjct: 242 NFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLL 301
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+FFYT AFGTPNFD+MKGNRICKQIPW+ D +LAAWR+ +TGYPWIDAIMVQL KWG
Sbjct: 302 WREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWG 361
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
WMHHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ +
Sbjct: 362 WMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQAIK 421
Query: 300 --------IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+ + KYDP+G YIRHFLPVLKDMPK+YIYEPWTAPL++QT+A CI+G
Sbjct: 422 ATFVMLTLVSQCIVMVSKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVG 481
Query: 352 RDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQK 411
+DYP P+V HDSASKECKRK+GEAYALN+K++G+V E+ L++LRRK E +E++ES R +
Sbjct: 482 KDYPKPMVLHDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLEKDEHEESKIRNQ 541
Query: 412 QKTL 415
+ L
Sbjct: 542 RPKL 545
>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
Length = 551
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/414 (72%), Positives = 349/414 (84%), Gaps = 3/414 (0%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV D+A+ +GI+VFSPVSHTLF+PA+II+KNGG+PP+TYQSF+ +AG+P P+
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEP---PEPIMEEY 193
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPPVGD G +E+ VP VEELGY QE+LSPFRGGE+EALK++RES+ DKEWVA F
Sbjct: 194 SELPPVGDTGEYELLPVPRVEELGYGDISQEDLSPFRGGETEALKRMRESLHDKEWVAKF 253
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFY C+ DVY++ KKHT+PPVSL GQLLWR
Sbjct: 254 EKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDVYRSTKKHTNPPVSLTGQLLWR 313
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTVAFGTPNFD+MKGN+ICKQIPW+ ++EL AWR+ RTGYPWIDAIM+QLRKWGWM
Sbjct: 314 DFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWM 373
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGD+F+HWEKGRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQY+RIY
Sbjct: 374 HHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIY 433
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP SFGKKYDPNGNYIRHF+PVLKDMPKEYIYEPWTAPL+IQ +A CIIG+DYP PVV H
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
ASKECK+ +GEAYA N+ + + + N R+ +Q + K K L
Sbjct: 494 AIASKECKKMMGEAYASNRLDDDKPDKGKSSNSSRRKLSAGSQVTPNSSKTKQL 547
>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
Length = 551
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/414 (71%), Positives = 348/414 (84%), Gaps = 3/414 (0%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV D+A+ +GI+VFSPVSHTLF+PA+II+KNGG+PP+TYQSF+ +AG+P P+
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEP---PEPIMEEY 193
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPPVGD G +E+ VP VEELGY QE+LS FRGGE+EALK++RES+ DKEWVA F
Sbjct: 194 SELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKF 253
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFY C+ D+Y++ KKHT+PPVSL GQLLWR
Sbjct: 254 EKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPVSLTGQLLWR 313
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTVAFGTPNFD+MKGN+ICKQIPW+ ++EL AWR+ RTGYPWIDAIM+QLRKWGWM
Sbjct: 314 DFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWM 373
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGD+F+HWEKGRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQY+RIY
Sbjct: 374 HHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIY 433
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP SFGKKYDPNGNYIRHF+PVLKDMPKEYIYEPWTAPL+IQ +A CIIG+DYP PVV H
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
ASKECK+ +GEAYA N+ + + + N R+ +Q + K K L
Sbjct: 494 AIASKECKKMMGEAYASNRLDDDKPDKGKSSNSSRRKLSAGSQVTPNSSKTKQL 547
>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
gi|306756329|sp|Q0E2Y1.1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
Length = 551
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/414 (71%), Positives = 348/414 (84%), Gaps = 3/414 (0%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV D+A+ +GI+VFSPVSHTLF+PA+II+KNGG+PP+TYQSF+ +AG+P P+
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEP---PEPIMEEY 193
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPPVGD G +E+ VP VEELGY QE+LS FRGGE+EALK++RES+ DKEWVA F
Sbjct: 194 SELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKF 253
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFY C+ D+Y++ KKHT+PPVSL GQLLWR
Sbjct: 254 EKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPVSLTGQLLWR 313
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTVAFGTPNFD+MKGN+ICKQIPW+ ++EL AWR+ RTGYPWIDAIM+QLRKWGWM
Sbjct: 314 DFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWM 373
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGD+F+HWEKGRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQY+RIY
Sbjct: 374 HHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIY 433
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP SFGKKYDPNGNYIRHF+PVLKDMPKEYIYEPWTAPL+IQ +A CIIG+DYP PVV H
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
ASKECK+ +GEAYA N+ + + + N R+ +Q + K K L
Sbjct: 494 AIASKECKKMMGEAYASNRLDDDKPDKGKSSNSSRRKLSAGSQVTPNSSKTKQL 547
>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
Length = 550
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/414 (70%), Positives = 353/414 (85%), Gaps = 4/414 (0%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV D+A +GIEVF+PVSHTLF+PA+II+KNGG+PPLTYQSF+ +AG+P P+
Sbjct: 134 KVTDFALASGIEVFTPVSHTLFDPAEIIKKNGGRPPLTYQSFVSIAGEP---PDPIMEEY 190
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPP+GD G +E+ VPTVEELGY +EE+ PFRGGE+EAL++++ES+ +KEWVA F
Sbjct: 191 SELPPLGDTGEYELLPVPTVEELGYVDISEEEIPPFRGGETEALRRMKESLQNKEWVAKF 250
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA+LKP+TTVLSPYLKFGCLSSRYFY C+ DVY++V+ HT PPVSL+GQLLWR
Sbjct: 251 EKPKGDPSAFLKPSTTVLSPYLKFGCLSSRYFYHCIQDVYKSVRNHTKPPVSLIGQLLWR 310
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTV++GTPNFDRMKGN+ICKQIPWS ++EL AWR+ +TGYPWIDAIM+QLRKWGWM
Sbjct: 311 DFFYTVSYGTPNFDRMKGNKICKQIPWSENEELFVAWRDGQTGYPWIDAIMIQLRKWGWM 370
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGDMF+HWEKGRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQY+RIY
Sbjct: 371 HHLARHSVACFLTRGDMFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIY 430
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP++FGKKYDPNGNYIRHF+PVLKDMP+EYIYEPWTAPL+IQ +A CIIG+DYP PVV H
Sbjct: 431 SPITFGKKYDPNGNYIRHFIPVLKDMPREYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 490
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
++ASKECK+++GEAYA + +L+ ++ N R+ +Q++ K L
Sbjct: 491 ETASKECKKRMGEAYA-SSRLDANPTKGKTLNSSRRKMPHGDQDTSNSTISKLL 543
>gi|357139910|ref|XP_003571518.1| PREDICTED: (6-4)DNA photolyase-like [Brachypodium distachyon]
Length = 547
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 291/415 (70%), Positives = 351/415 (84%), Gaps = 10/415 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V D+A+ GIEVF+PVSHTLF+PA+II+KNGG+PPLTYQSFL +AG+P P+
Sbjct: 134 RVTDFAAALGIEVFTPVSHTLFDPAEIIEKNGGRPPLTYQSFLAIAGEP---PKPVMAEY 190
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LP +GD G +E+ VP +EELGY QE +SPFRGGE+EALK++RES+ DKEWV+ F
Sbjct: 191 SELPLIGDTGEYELLPVPKLEELGYGDISQENISPFRGGETEALKRMRESLQDKEWVSMF 250
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFY C+ +VY++ KKHT PPVSL GQLLWR
Sbjct: 251 EKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQEVYRSTKKHTKPPVSLTGQLLWR 310
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTV+FGT +FD MKGN+ICKQIPW ++EL AWR+ RTGYPWIDAIM+QLRKWGWM
Sbjct: 311 DFFYTVSFGTLSFDHMKGNKICKQIPWRQNEELFVAWRDGRTGYPWIDAIMIQLRKWGWM 370
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGD+F+HWEKGRDVF+RLLIDSDWAINNGNWLWLSCSSFFYQY+RIY
Sbjct: 371 HHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYHRIY 430
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP+SFGKKYDPNG+YIRHF+PVLKDMPKEYIYEPWTAPL++Q +A+CI+GRDYP PVV H
Sbjct: 431 SPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPLSVQEKARCIVGRDYPKPVVDH 490
Query: 362 DSASKECKRKLGEAYALNQ----KLNGQVSEDGLKNLRRKFEGEENQESGRRQKQ 412
++ASKEC++++GEAYA N+ +NG+ SE + R+ +G ++ + KQ
Sbjct: 491 EAASKECRKRMGEAYASNRLGGNTVNGKTSE---SSRRKSSDGGQDASDLSKSKQ 542
>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
Length = 560
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 297/423 (70%), Positives = 348/423 (82%), Gaps = 12/423 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQK---------NGGKPPLTYQSFLKLAGQPLW 52
KV D+A+ +GI+VFSPVSHTLF+PA+II+K NGG+PP+TYQSF+ +AG+P
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGGRPPMTYQSFVAIAGEP-- 194
Query: 53 ASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESI 112
P+ S LPPVGD G +E+ VP VEELGY QE+LS FRGGE+EALK++RES+
Sbjct: 195 -PEPIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESL 253
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
DKEWVA FEKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFY C+ D+Y++ KKHT+PPV
Sbjct: 254 HDKEWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPV 313
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
SL GQLLWRDFFYTVAFGTPNFD+MKGN+ICKQIPW+ ++EL AWR+ RTGYPWIDAIM
Sbjct: 314 SLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIM 373
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
+QLRKWGWMHHLARH VACFLTRGD+F+HWEKGRDVF+RLLIDSDWAINNGNW+WLSCSS
Sbjct: 374 IQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSS 433
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
FFYQY+RIYSP SFGKKYDPNGNYIRHF+PVLKDMPKEYIYEPWTAPL+IQ +A CIIG+
Sbjct: 434 FFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGK 493
Query: 353 DYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQ 412
DYP PVV H ASKECK+ +GEAYA N+ + + + N R+ +Q + K
Sbjct: 494 DYPKPVVDHAIASKECKKMMGEAYASNRLDDDKPDKGKSSNSSRRKLSAGSQVTPNSSKT 553
Query: 413 KTL 415
K L
Sbjct: 554 KQL 556
>gi|413936069|gb|AFW70620.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 548
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 283/397 (71%), Positives = 344/397 (86%), Gaps = 4/397 (1%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV D+A +GIEV +PVSHTLF+P +II+KNGG+PPLTYQSF+ +AG+P +P
Sbjct: 133 KVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIAGEP---PAPAMEEY 189
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPP+GD G +E+ VPTVEELGY QEE+ PF GGE+EAL++++ES+ +KEWVA F
Sbjct: 190 SELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKESLQNKEWVAKF 249
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA++KP+TTVLSPYLKFGCLSSRYFY C+ DV+++V+ HT PPVSL GQLLWR
Sbjct: 250 EKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKPPVSLTGQLLWR 309
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTV++GTPNFDRMKGN+ICKQIPWS +++L AWR+ +TGYPWIDAIM+QLR WGWM
Sbjct: 310 DFFYTVSYGTPNFDRMKGNKICKQIPWSENEDLFVAWRDGQTGYPWIDAIMIQLRNWGWM 369
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGDMF+HWEKGRDVF+RLLIDSDWAINNGNWLWLSCSSFFYQY+RIY
Sbjct: 370 HHLARHSVACFLTRGDMFIHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYHRIY 429
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP++FGKKYDPNGNYIRHF+PVLKDMP+EYIYEPWTAP +IQ +A CIIG+DYP PVV H
Sbjct: 430 SPITFGKKYDPNGNYIRHFIPVLKDMPREYIYEPWTAPTSIQKKANCIIGKDYPKPVVDH 489
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKF 398
++ASKEC++++GEAYAL+ +++ + S+ N RRK
Sbjct: 490 ETASKECRKRMGEAYALS-RVDAKPSKGKTLNSRRKM 525
>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust.
Identities = 286/412 (69%), Positives = 342/412 (83%), Gaps = 4/412 (0%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V D+A+ +GIEVFSPVSHTLF+PA+II+KNGG+PPLTYQSF+ AG+P P+
Sbjct: 133 RVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSFVATAGEP---PKPVMEEY 189
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPP+GD G +E+ VP +EELGY QE + PFRGGE+EALK++RES+ DKEWVA F
Sbjct: 190 SVLPPIGDTGGYELLPVPKLEELGYGDLSQEYIPPFRGGETEALKRMRESLQDKEWVAKF 249
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA++KPATTVLSPYLKFGCLS RYFY C+ DVY++ K HT PPVSL GQLLWR
Sbjct: 250 EKPKGDPSAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTKPPVSLAGQLLWR 309
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTV+ GTPNFD M+GN ICKQIPW +EL AWR+ RTGYPWIDAIM+QLRKWGWM
Sbjct: 310 DFFYTVSLGTPNFDHMEGNPICKQIPWRESEELFVAWRDGRTGYPWIDAIMIQLRKWGWM 369
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGD+++HWE+GRDVF+RLLIDSDWAINNGNWLWLSCSSFFYQY+RIY
Sbjct: 370 HHLARHSVACFLTRGDLYIHWEQGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYHRIY 429
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP+SFGKKYDPNG+YIRHF+PVLKDMPKEYIYEPWTAPL++Q +A+CI+G+DYP PVV H
Sbjct: 430 SPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPLSVQEKARCIVGKDYPKPVVDH 489
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKF-EGEENQESGRRQKQ 412
++ASK C+R++GEAYA N+ V + + RRK G ++ + KQ
Sbjct: 490 EAASKGCRRRMGEAYASNRLGGSTVKGNSSNSSRRKLCHGGQDVPDSSKSKQ 541
>gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis]
Length = 431
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/423 (65%), Positives = 344/423 (81%), Gaps = 13/423 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
VK++A G++VF+P+SHT+F+P +II+KNGGKPPLTYQSF+KL G P PLP+
Sbjct: 15 VKEFALKLGVDVFTPISHTIFSPEEIIKKNGGKPPLTYQSFIKLIGLP-----PLPLGNG 69
Query: 63 S--LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
S +PPVG ++ +PT+ +LG+ QEE +PF GGE+EALK++ SI D++WVA
Sbjct: 70 SPSIPPVGIDNSNDLP-IPTLTDLGFGDVSQEECNPFIGGETEALKRMDASIQDQKWVAA 128
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDP+A+LKPATTVLSPYLKFGCLSSR FYQ L +VY+ VKKHT PPVSL GQLLW
Sbjct: 129 FEKPKGDPTAFLKPATTVLSPYLKFGCLSSRLFYQRLQEVYRKVKKHTEPPVSLEGQLLW 188
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYTVA+GTP FD+M+GN ICKQIPW++DD LL+AWR+ +TGYPWIDA+MVQLRKWGW
Sbjct: 189 REFFYTVAYGTPKFDQMEGNPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGW 248
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARH VACFLTRGD+FVHWEKGRDVFDRLLIDSDWAINN NW+WLSCS+FF QY+RI
Sbjct: 249 MHHLARHAVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSAFFSQYHRI 308
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP+SFGKKYDP+G Y+R+FLPVLKDMPKEYIYEPWTAP+ +Q +AKCIIG+DYP P+VS
Sbjct: 309 YSPISFGKKYDPDGKYVRYFLPVLKDMPKEYIYEPWTAPIDVQRKAKCIIGKDYPEPLVS 368
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQ-----KQKTL 415
H ASK CK K+ AYALN+++ G+ ++ L+ +++ N + +Q +QK L
Sbjct: 369 HLGASKNCKEKIAAAYALNKQIKGERNQVQLQGVKKNSSDSRNTDDVIKQPPKKLRQKKL 428
Query: 416 TGW 418
T +
Sbjct: 429 TSY 431
>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
Length = 526
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 262/408 (64%), Positives = 313/408 (76%), Gaps = 20/408 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS-- 60
+K A+ G+EVFSPVSHTLFNP D I+KNGG+ PLTYQ+FLKL G+P PLPV+
Sbjct: 122 IKKLATKYGVEVFSPVSHTLFNPIDTIRKNGGQTPLTYQAFLKLTGKP-----PLPVTAP 176
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
L P D+ + VP +E+LGY EE SP GGE+EAL++L +S+ +++WV +
Sbjct: 177 LQIPSPPEDLNDVHVVPVPKLEDLGYVNL-DEEFSPHPGGETEALRRLDKSLVNQKWVCD 235
Query: 121 FEKPKGDPSAYLKPATTVLSPYLK------------FGCLSSRYFYQCLTDVYQNVKKHT 168
FEKPKG+P+A+++PATTVLSPYLK FGCLS R F+Q L VY KKH+
Sbjct: 236 FEKPKGNPTAFIEPATTVLSPYLKASNLGFLLKPMLFGCLSCRLFHQRLLAVYSQNKKHS 295
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
SPPVSL GQLLWR+FFYT +GTPNFDRM GN ICKQIPW +DD LLAAWR+ +TGYPWI
Sbjct: 296 SPPVSLEGQLLWREFFYTAGYGTPNFDRMLGNPICKQIPWKDDDRLLAAWRDGQTGYPWI 355
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA MVQLRKWGWMHHLARH VACFLTRGDMFV+WEKGRDVFDRLLIDSDWAINNGNWLWL
Sbjct: 356 DAAMVQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDSDWAINNGNWLWL 415
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
S S+FF+QY+RIYSPV+FGKKYDP+G Y++HFLPVLKDMPK YIYEPWTAPL +Q +A C
Sbjct: 416 SASAFFHQYHRIYSPVTFGKKYDPDGLYVKHFLPVLKDMPKYYIYEPWTAPLAVQKKANC 475
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRR 396
IIG DYP P+V H A+KEC+ K+G AY+ N+ ++ RR
Sbjct: 476 IIGVDYPRPIVDHSIANKECREKMGIAYSQNRSQAAPSVSSTMRKRRR 523
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/419 (60%), Positives = 315/419 (75%), Gaps = 13/419 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K+K++A GIE+ PVSHT+FNP +I KNGGK PLT+QSF K + A+ P+
Sbjct: 118 KIKEHAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCK---NLVPATKPIGNGP 174
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S++PP GD+ ++ VPT+EELGY + E+ SPFRGGE+ AL +L +S+++++WV F
Sbjct: 175 SAIPPTGDLHGIKVVPVPTLEELGYADF-HEDFSPFRGGETVALTRLEDSLANEKWVCEF 233
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDP+A++KPATTVLSPYLKFGCLSSR Y + +VY K TSPPVSL QLLWR
Sbjct: 234 EKPKGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRVKEVYSRAKSFTSPPVSLEAQLLWR 293
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+FFYT A+ T NFD+M GN ICKQIPW +DDELL+AWR+ RTGYPWIDA M QLRKWGWM
Sbjct: 294 EFFYTAAYATANFDKMVGNPICKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWM 353
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGDMFV+WEKGRDVFDRLLID+DW+INNGNWLWLS S+FF QY+RIY
Sbjct: 354 HHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQYHRIY 413
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP++F KKYD GNYI+HFLP E+IYEPW AP IQ +AKCIIG+DYP PV+ H
Sbjct: 414 SPITFAKKYDRQGNYIKHFLP-------EFIYEPWKAPAEIQRKAKCIIGKDYPTPVLDH 466
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEG--EENQESGRRQKQKTLTGW 418
+ASK C+ ++G AYAL++ +G VS + + L+ + +RQKQ +T +
Sbjct: 467 AAASKICRERMGAAYALSKSSHGNVSREQVDELQDTLTDVPTSSTSKNKRQKQSRITDY 525
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 237/296 (80%), Positives = 271/296 (91%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVKDYAS+ G+EVFSPVSHTLFNPA II+KNGGKPPL+YQSFLK+AG+P A S L +S
Sbjct: 141 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 200
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
SSLPP+GD+G ISEVP++EELGYK Q + +PFRGGESEALK+L +SISDK WVAN
Sbjct: 201 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 260
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLLW
Sbjct: 261 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLW 320
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT AFGTPNFD+MKGNRICKQIPW+ D +LAAWR+ +TGYPWIDAIMVQL KWGW
Sbjct: 321 REFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGW 380
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
MHHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ
Sbjct: 381 MHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ 436
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/365 (60%), Positives = 272/365 (74%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K+ A AGIEV S VSHTL++ +D++ KNGGK PLTY+ F K +P+
Sbjct: 117 KITAAAQEAGIEVISCVSHTLYDTSDVVAKNGGKAPLTYKGFEKAITALGPPPAPVEDPP 176
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
+ LPP+ SE +V L GY E + +GGE+EAL +L E +SDK WVA F
Sbjct: 177 AKLPPLAADSKGTDSETTSVPSLRELGYPDEASTDIKGGETEALARLAEQLSDKGWVAAF 236
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDP+A++KPATTVLSP+LKFGCLS R FY+ L VY+ K+H+ PPVSL+GQLLWR
Sbjct: 237 EKPKGDPTAFIKPATTVLSPHLKFGCLSPRLFYEALQRVYKEKKEHSKPPVSLLGQLLWR 296
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+F+Y A TPN+ RM+GN ICKQIPW N+ E AW E+RTGYPWIDAIM QLR+ GWM
Sbjct: 297 EFYYVAAAHTPNYHRMEGNPICKQIPWDNNAEFYRAWEESRTGYPWIDAIMAQLRRTGWM 356
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARHCVACFLTRGD++V WEKGRD FDRLLID D ++N+GNW+WLS SSFFYQY R+Y
Sbjct: 357 HHLARHCVACFLTRGDLYVSWEKGRDTFDRLLIDGDPSLNSGNWMWLSASSFFYQYFRVY 416
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP+++GKKYDP G Y++HFLP+LKD P +YI+EPW AP +Q +A CIIG+DYPAP+V H
Sbjct: 417 SPITYGKKYDPEGKYVKHFLPILKDYPPKYIWEPWKAPKEVQEQAGCIIGKDYPAPIVDH 476
Query: 362 DSASK 366
SK
Sbjct: 477 AEVSK 481
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/382 (58%), Positives = 278/382 (72%), Gaps = 14/382 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA---GQPLWASSPLP 58
+V D A AG+EV SHTL++ ++++N GK PLT Q+F KL G PL A LP
Sbjct: 160 RVDDMAREAGVEVKKHWSHTLYDTDMLVRENKGKAPLTMQAFEKLVDRVGHPLTA---LP 216
Query: 59 VSLSSLPPVGDVGYFEISE----VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
+ LPPV DV I + VPT +E+G+K + + F+GGE+EALK+L + D
Sbjct: 217 APTARLPPV-DVSLPGIKDAEVGVPTWQEMGFK---EAPTAIFKGGETEALKRLEHYMKD 272
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+W A+FEKP DPSA+ +P+TT LSPYLKFGCLS+R+F+Q L DVY+ KH+ PP+SL
Sbjct: 273 TKWXASFEKPSTDPSAFTEPSTTALSPYLKFGCLSARFFHQRLLDVYRLHPKHSQPPMSL 332
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQLLWR+FFYT+ TPNFDR+ GN IC+QI W + LL AWR+ TGYPWIDA M Q
Sbjct: 333 RGQLLWREFFYTLGSHTPNFDRIAGNPICRQITWDTNPALLKAWRDGATGYPWIDAAMTQ 392
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+WGWMHHLARH VACFLTRGD+++ WE G++VF+ LL+D+D+ IN NW+WLS S+FF
Sbjct: 393 LREWGWMHHLARHSVACFLTRGDLYLSWESGKEVFEELLLDADYFINAANWMWLSASAFF 452
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
QY R+YSPV FGKKYD G YIR FLPVLKDMP +YIYEPWTAP +Q RA CIIGRDY
Sbjct: 453 AQYFRVYSPVVFGKKYDKEGAYIRKFLPVLKDMPAKYIYEPWTAPKEVQQRANCIIGRDY 512
Query: 355 PAPVVSHDSASKECKRKLGEAY 376
PAP+V H ASKEC ++G AY
Sbjct: 513 PAPIVDHAVASKECIARMGAAY 534
>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
Length = 433
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/324 (65%), Positives = 258/324 (79%), Gaps = 4/324 (1%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K+K++A GIE+ VSHT+FNP +I KNGGK PLT+QSF K + A+ P+
Sbjct: 110 KIKEHAKDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCK---NLVPATKPIGNGP 166
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
SS+PP GD+ ++ VPT+EELGY + E+ SPFRGGE+ L +L +S+++++WV F
Sbjct: 167 SSIPPTGDLHGIKVVPVPTLEELGYTDF-HEDFSPFRGGETVGLTRLEDSLANEKWVCEF 225
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDP+A++KPATTVLSPYLKFGCLSSR FY + +VY K TSPPVSL QLLWR
Sbjct: 226 EKPKGDPTAFIKPATTVLSPYLKFGCLSSRLFYSRVKEVYSRAKSFTSPPVSLEAQLLWR 285
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+FFYT A+ T NFD+M GN CKQIPW +DDELL+AWR+ RTGYPWIDA M QLRKWGWM
Sbjct: 286 EFFYTAAYATANFDKMVGNPTCKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWM 345
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGDMFV+WEKGRDVFDRLLID+DW+INNGNWLWLS S+FF QY+RIY
Sbjct: 346 HHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQYHRIY 405
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLK 325
SP++F KKYD GNYI+HFLPV+K
Sbjct: 406 SPITFAKKYDRQGNYIKHFLPVIK 429
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/381 (56%), Positives = 269/381 (70%), Gaps = 14/381 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-------PLWASS 55
V+ A+ AG+EV +P+SHTL++ ++ +NGG PLT QSF KL + +
Sbjct: 117 VRRLAAEAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKLVDRVGDPPAPAPDPPA 176
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
+P +P + VPT +E+G+K + L+ F+GGE+EAL +L + D
Sbjct: 177 AMPPPAEDMPSAAPAA----TGVPTWQEVGFK---EPPLTVFKGGETEALARLEAAFQDP 229
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+WVA F+KP DPSA+ KPATTVLSPYLKFGCLS+R F+ L +VY+ H+ PPVSL
Sbjct: 230 KWVAGFQKPDTDPSAWEKPATTVLSPYLKFGCLSARLFHARLLEVYRRHPAHSQPPVSLR 289
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYTV TPNF RM GN +CKQI W ++ E LAAWREARTG+PWIDAIM QL
Sbjct: 290 GQLLWREFFYTVGSTTPNFHRMAGNPVCKQIDWDDNPEFLAAWREARTGFPWIDAIMTQL 349
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
WGWMHHLARH VACFLTRGD++V WE+G +VF+ LID D +N NW+WLS S+FF
Sbjct: 350 VTWGWMHHLARHSVACFLTRGDLYVSWERGMEVFEEHLIDQDHYLNAANWMWLSASAFFS 409
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV FGKKYDP G +IR FLPVLKDMP +YIYEPWTAPL +Q +A C++GRDYP
Sbjct: 410 QYFRVYSPVVFGKKYDPEGRFIRKFLPVLKDMPAKYIYEPWTAPLEVQRKAGCVVGRDYP 469
Query: 356 APVVSHDSASKECKRKLGEAY 376
AP+V H ASK C ++ AY
Sbjct: 470 APIVDHAVASKACIARMAAAY 490
>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260, partial [Chlorella
variabilis]
Length = 491
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/381 (55%), Positives = 274/381 (71%), Gaps = 5/381 (1%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+ V+ A AG+EV +PVSHTL++P ++Q+NGG+ PLT QSF KL A+ ++
Sbjct: 115 VAVRQLAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLVDGGGCAAGYRCIA 174
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
S P + ++ VP++ ++GY G +PF+GGES AL ++ + +SDK WV
Sbjct: 175 APSWPQAAALVSSSVA-VPSLTDIGYPPTGT---TPFKGGESAALARMADYLSDKGWVCA 230
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY-QNVKKHTSPPVSLVGQLL 179
FEKPKG+P+A+++P+TTVLSPYLKFGCLS R F+ L +Y + HT PPVSL GQLL
Sbjct: 231 FEKPKGNPAAFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAERNGMHTQPPVSLRGQLL 290
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+FF PNFDRM GN ICKQIPW +D E +AAW +RTGYPWIDAIM QLR+ G
Sbjct: 291 WREFFTLCGAAIPNFDRMAGNPICKQIPWVDDPERIAAWEHSRTGYPWIDAIMAQLRQQG 350
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
WMHHLARH VACFLTRGD++ WE G+ VFD+ LID+DW++N NW WLS S+FF QY R
Sbjct: 351 WMHHLARHSVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQYFR 410
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+YSP++FGK+YD NG+YIR FLPVLKDMP YIYEPWTAPL++Q A C++G+DYP P+V
Sbjct: 411 VYSPIAFGKQYDKNGDYIRRFLPVLKDMPVRYIYEPWTAPLSVQQAAGCVVGKDYPRPIV 470
Query: 360 SHDSASKECKRKLGEAYALNQ 380
H +A KE ++ AY ++
Sbjct: 471 DHQAAMKENMARMKAAYGASK 491
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/434 (48%), Positives = 282/434 (64%), Gaps = 51/434 (11%)
Query: 2 KVKDYA-----STAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------P 50
K++D A AG+E + HTL++ ++++K G PP TYQ F K+ + P
Sbjct: 1203 KIRDAAVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAP 1262
Query: 51 LWASSPLPVSLSSLPPVGDV---GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKK 107
+ A +P S +S G + +PT+E+LGY+ G +E P GGE+E L++
Sbjct: 1263 IDAMEKMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGETEGLRR 1322
Query: 108 LRESISDKEWVANFEKPKGDPS------------------------------------AY 131
LR ++ KEW+ FEKP +P+ A
Sbjct: 1323 LRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTSGAEAL 1382
Query: 132 LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFYTVAFG 190
+ P+TT LSPY+KFGC+S R FY LT VY+ ++ KH+ PP SL+GQL+WR+F+Y VA G
Sbjct: 1383 MIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYYLVAAG 1442
Query: 191 TPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
T NFD+M+GN IC+QIPW D EL AAW A+TG+PWIDA M QLR+ GW+HHLARH VA
Sbjct: 1443 TKNFDKMEGNAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAVA 1502
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKY 310
CFLTRGD+F+HWE GRD FDR L+D+DWA+NNGNW+WLSCS+FFYQY R+YSP++F KKY
Sbjct: 1503 CFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAFFYQYFRVYSPIAFAKKY 1562
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKR 370
D +G Y+RH+LPVLK+MP +Y+YEPW APL +Q +A C++G DYPAP+V H +ASK C
Sbjct: 1563 DKDGQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSAASKRCVD 1622
Query: 371 KLGEAYALNQKLNG 384
+ AYA ++ N
Sbjct: 1623 DIATAYAAHKDANA 1636
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/428 (48%), Positives = 279/428 (65%), Gaps = 46/428 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
V+ AG+E + HTL++ ++++K G PP TYQ F K+ + P+ A
Sbjct: 122 VRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAMEK 181
Query: 57 LPVSLSSLPPVGDV---GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
+P S +S G + +PT+E+LGY+ G +E P GGE+E L++LR ++
Sbjct: 182 MPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGETEGLRRLRLMLA 241
Query: 114 DKEWVANFEKPKGDPS------------------------------------AYLKPATT 137
KEW+ FEKP +P+ A + P+TT
Sbjct: 242 RKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTSGAEALMIPSTT 301
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDR 196
LSPY+KFGC+S R FY LT VY+ ++ KH+ PP SL+GQL+WR+F+Y VA GT NFD+
Sbjct: 302 ALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYYLVAAGTKNFDK 361
Query: 197 MKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRG 256
M+GN IC+QIPW D EL AAW A+TG+PWIDA M QLR+ GW+HHLARH VACFLTRG
Sbjct: 362 MEGNAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAVACFLTRG 421
Query: 257 DMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNY 316
D+F+HWE GRD FDR L+D+DWA+NNGNW+WLSCS+FFYQY R+YSP++F KKYD +G Y
Sbjct: 422 DLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAFFYQYFRVYSPIAFAKKYDKDGQY 481
Query: 317 IRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
+RH+LPVLK+MP +Y+YEPW APL +Q +A C++G DYPAP+V H +ASK C + AY
Sbjct: 482 VRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSAASKRCVDDIATAY 541
Query: 377 ALNQKLNG 384
A ++ N
Sbjct: 542 AAHKDANA 549
>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
Length = 621
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/379 (54%), Positives = 264/379 (69%), Gaps = 8/379 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+++ A AG+ V++ VSHTL+ G P+ +L P P
Sbjct: 116 RIQGLADEAGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGGRRGPACE 175
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
++ P D + VPT +E+G+ + + F+GGE+EALK+L S++D +WVA+F
Sbjct: 176 NA--PSTDAA---TTAVPTWQEVGFT---EAPTTIFKGGETEALKRLSASLADSKWVADF 227
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+KP DP+A+ +PATTVLSPY+KFGCLS R F+ L +VY+ + H+ PPVSL GQLLWR
Sbjct: 228 KKPDTDPAAFERPATTVLSPYVKFGCLSPRLFHARLLEVYRRHRGHSQPPVSLRGQLLWR 287
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+FFYTV TPNF RM GN +CKQI W +D+ELLAAWREARTG+PWIDAIM QLR+WGWM
Sbjct: 288 EFFYTVGAHTPNFHRMDGNPLCKQIDWDDDEELLAAWREARTGFPWIDAIMTQLRQWGWM 347
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGD++V WE+G VF+ LLID D +N NW+WLS S+FF QY R+Y
Sbjct: 348 HHLARHSVACFLTRGDLYVSWERGMQVFEELLIDQDHYLNAANWMWLSASAFFSQYFRVY 407
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP+SFGKKYDP G +IR FLPVLKDMP +YIYEPWTAP +Q RA C+IGRDYP PVV H
Sbjct: 408 SPISFGKKYDPEGKFIRKFLPVLKDMPSKYIYEPWTAPSEVQRRAGCVIGRDYPHPVVDH 467
Query: 362 DSASKECKRKLGEAYALNQ 380
SK+ ++ AY N+
Sbjct: 468 ALVSKQNIARMAAAYRSNK 486
>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
Length = 507
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/374 (53%), Positives = 271/374 (72%), Gaps = 16/374 (4%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL---AGQP---LWAS 54
+ V+ AS G+EV + V+HTL++ +++NGG PPLTY+ FLK+ G+P +
Sbjct: 117 VAVRKIASDMGVEVVTHVAHTLYDIDRTVERNGGTPPLTYRKFLKVYNEMGKPPKEKETA 176
Query: 55 SPLPVSLSSLPP--VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESI 112
+ + +LPP + D + ++ T+EELG + + + F GGE+EAL++L +S+
Sbjct: 177 TTEHFANCTLPPEALQDKKF----DMVTLEELGMRC---DFPAKFVGGETEALRRLEKSL 229
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
DK+WV FEKPK P++ L P+TTVLSPY+ GCLS+R FY L +Y K H+ PPV
Sbjct: 230 EDKDWVLKFEKPKTSPNSLL-PSTTVLSPYITVGCLSARLFYHQLDKIYSKAKNHSQPPV 288
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
SL GQL+WR+FFYT A TPNF++M+GNR+C QIPW+ +DE L WR A+TG+PWIDA M
Sbjct: 289 SLHGQLIWREFFYTAAAHTPNFNQMEGNRVCLQIPWNKNDEHLTRWRNAQTGFPWIDAAM 348
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
QLRK GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N GNW+WLS S+
Sbjct: 349 TQLRKEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSLNAGNWMWLSASA 408
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
FF+QY R+YSP+ FGKK DP G +IRH+LPVLK+ PKEYIYEPW AP +Q +A CI+G+
Sbjct: 409 FFHQYFRVYSPIVFGKKTDPKGTFIRHYLPVLKNFPKEYIYEPWKAPRNVQEKAGCIVGK 468
Query: 353 DYPAPVVSHDSASK 366
DYP P+V H AS+
Sbjct: 469 DYPRPIVDHKEASQ 482
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/452 (48%), Positives = 277/452 (61%), Gaps = 61/452 (13%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKN-GGKPPLTYQSFLKLAG------------- 48
V + A G+EV +PVSHTL++ ++ K G+PP Y SFLK+A
Sbjct: 114 VNEAARALGVEVHAPVSHTLWDLDRLLAKCPRGEPPTAYASFLKIAHGVGPVPPVAPDVP 173
Query: 49 --QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALK 106
PL L + + DV S +P++E LGY+ E P RGGE+E L
Sbjct: 174 SITPLSDGDALSDGKDLVDALRDV--VTGSGIPSLERLGYEPIKAGEGFPARGGETEGLA 231
Query: 107 KLRESISDKEWVANFEKPKGDPS------------------------------------- 129
+LR+ ++ ++A F+KP+ +P+
Sbjct: 232 RLRKMLARTTYIAEFKKPQTNPTELWTPVLGKEGKVKGAPPANPFEAAKKSSKEPKSTQL 291
Query: 130 --AYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY--QNVKKHTSPPVSLVGQLLWRDFFY 185
A++ PATT LSPYLKFGC+S R F+ L V + KH+ PP SL GQLLWR+F+Y
Sbjct: 292 AEAFMAPATTALSPYLKFGCVSPRTFWHELRAVLDVELGGKHSKPPESLEGQLLWREFYY 351
Query: 186 TVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+GTPN+DRM GNRIC+QIPW+ D+E LAAW E+RTG+PWIDA M+QL++ GWMHHLA
Sbjct: 352 LAGYGTPNYDRMAGNRICRQIPWTWDEERLAAWEESRTGFPWIDACMMQLKQEGWMHHLA 411
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
RH VACFLTRGD+FVHWE G VFDR L+D+DWA+NNGNW+WLSCS FFYQY R+Y PVS
Sbjct: 412 RHAVACFLTRGDLFVHWEAGAAVFDRELVDADWALNNGNWMWLSCSCFFYQYFRVYGPVS 471
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSAS 365
FGKKYD G YIR +LP LKDMP +YIYEPWTAP+ +Q +A C++G DYPAP+V H AS
Sbjct: 472 FGKKYDKEGAYIRKYLPQLKDMPAKYIYEPWTAPIEVQRKAGCVVGVDYPAPIVDHAVAS 531
Query: 366 KECKRKLGEAYALNQKLNGQVSEDGLKNLRRK 397
KEC K+ AY N NG +RK
Sbjct: 532 KECIEKIAAAY--NAHKNGTAGSIVAAGKKRK 561
>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/421 (51%), Positives = 269/421 (63%), Gaps = 53/421 (12%)
Query: 11 GIEVFSPVSHTLFNPADIIQKN-GGKPPLTYQSFLKLAGQPLWASSPLP----------- 58
G EV + SHTL++ ++ K G PP +Y SFLK+AG + P P
Sbjct: 126 GAEVKTFASHTLYDMERLLSKCPKGAPPTSYASFLKIAGSCGAVAKPAPPPPASMPGSPD 185
Query: 59 ----VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
V L ++ + DV VPT+EELGY +E P RGGE+E L +LR +S
Sbjct: 186 GKSHVELVAM--IEDVVSSAEVGVPTLEELGYPELPDDEGFPARGGETEGLDRLRRMLSR 243
Query: 115 KEWVANFEKPKGDPS----------------------------------AYLKPATTVLS 140
K W+A F+KP P+ A+L P+TT LS
Sbjct: 244 KTWIAEFQKPMTSPTSLWAVVGADGKTQKPANPFEAASKASKSKTVGAEAFLAPSTTALS 303
Query: 141 PYLKFGCLSSRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG 199
PYLKFGC+S R FY L DV + K KH++PPVSL GQLLWR+F+Y AFGTPN+ +M+G
Sbjct: 304 PYLKFGCVSPRTFYHELKDVLNDAKGKHSAPPVSLEGQLLWREFYYLAAFGTPNYHKMEG 363
Query: 200 NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMF 259
N IC+QIPW+ D+E LAAW E RTG+PWIDA M QLR+ GW+HHLARH VACFLTRGD+F
Sbjct: 364 NPICRQIPWTWDEERLAAWEEGRTGFPWIDACMHQLRQEGWLHHLARHAVACFLTRGDLF 423
Query: 260 VHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRH 319
VHWE G VFDR L+D+D A+N GNW+WLSCS FFYQY R+Y PVSFGKKYD +G +IR
Sbjct: 424 VHWEAGAKVFDRDLVDADPALNYGNWMWLSCSCFFYQYFRVYGPVSFGKKYDKDGTFIRK 483
Query: 320 FLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALN 379
+LPVLKDMP +YIYEPWTAP +Q +A C+IG DYP P+V H ASKEC KL AY +
Sbjct: 484 YLPVLKDMPAKYIYEPWTAPADVQKKAGCVIGVDYPPPIVDHAVASKECIEKLAVAYKAH 543
Query: 380 Q 380
+
Sbjct: 544 K 544
>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 540
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/388 (53%), Positives = 257/388 (66%), Gaps = 10/388 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGG--KPPLTYQSF----LKLAGQPLWASS 55
+ ++ A GIEV + V HTL +P I K GG K PLTY SF +L P S+
Sbjct: 114 QARELAEKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAALSA 173
Query: 56 PLPVSL--SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
P SS D +VP+++++GY+ E F GGE+EAL+++R +
Sbjct: 174 PTKEDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRHLQ 233
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K W+A+FEKPK P+ L+P+TT LSPYLKFGCLS R FY L VY + H PPVS
Sbjct: 234 RKAWIAHFEKPKTSPNT-LEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRDHAKPPVS 292
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FF+ + NFDRM+GNRIC+QI W +D LLAAW ARTGYPWIDA M
Sbjct: 293 LHGQLLWREFFHMCGYAVKNFDRMEGNRICRQIDWDTNDALLAAWENARTGYPWIDACMT 352
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD++ WEKG VFDRLL+D+DW +N+ NW+WLSCSSF
Sbjct: 353 QLRREGWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMWLSCSSF 412
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
FYQY R+YSPV+FGKK DP+G YIR +LP LK P +YIYEPW AP +Q CIIG+D
Sbjct: 413 FYQYFRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEPWKAPPGVQRSCGCIIGKD 472
Query: 354 YPAPVVSHDSASKECKRKLGEAY-ALNQ 380
YP P+V H S K ++ Y AL Q
Sbjct: 473 YPEPIVDHAEVSAANKARIRACYDALKQ 500
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas]
Length = 510
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/386 (52%), Positives = 269/386 (69%), Gaps = 10/386 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-S 60
++K A ++V S VSHTLF+P II KNGGK PLTYQ + S P PV S
Sbjct: 112 EIKKLADEHNVKVTSCVSHTLFDPQRIISKNGGKAPLTYQRLQTVLSS--LGSPPKPVDS 169
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWV 118
S + + + VP++E+LG ++E P F GGE+EAL++L + K WV
Sbjct: 170 PSECKTKTESDHDKKYGVPSLEDLGK---SEKECGPLLFPGGETEALRRLESMMGKKNWV 226
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
FEKPK P++ L+P+TTVLSPYLKFGCLS R FY L +VY N KHTSPPVSL+GQL
Sbjct: 227 CTFEKPKTAPNS-LEPSTTVLSPYLKFGCLSPRMFYYKLQEVY-NKAKHTSPPVSLLGQL 284
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+F+Y VA TPNFD+M+GN +CKQIPW ++ L AW+E RTGYP+IDA+M QLR+
Sbjct: 285 LWREFYYCVAVDTPNFDKMEGNPVCKQIPWDTNESYLKAWKEGRTGYPFIDAVMTQLRQE 344
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD++++WE+G VF+ L+D+DW++N GNW+WLS S+FF+QY
Sbjct: 345 GWIHHLARHSVACFLTRGDLWINWEEGMKVFEEYLLDADWSLNAGNWMWLSASAFFHQYF 404
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
R+YSP+ FGKK D +G+ IR ++P L P YIYEPW APL +Q +A CI+G+DYP P+
Sbjct: 405 RVYSPIEFGKKTDKDGDNIRKYVPQLSKYPTAYIYEPWKAPLKVQEKAGCIVGKDYPKPI 464
Query: 359 VSHDSASKECKRKLGEAYALNQKLNG 384
V HD K+ ++ +AY ++ G
Sbjct: 465 VEHDKIRKKNIERMAQAYNASKTEGG 490
>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
Length = 531
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/414 (50%), Positives = 277/414 (66%), Gaps = 20/414 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLW-ASSPLP 58
V+ A+ ++V VS+TL+ II +N GKPPLTY Q+ L L G P P
Sbjct: 113 VEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLALLGPPKRPVQVPTQ 172
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
++ + Y E VPT+EELG +L P + GGESEAL +L +
Sbjct: 173 ENMKDCCTLWKSSYNEKYGVPTLEELGQDSL---KLGPRLYPGGESEALSRLELHMKRTT 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WV NF+KP+ +P++ L P+TTVLSPY+KFGCLS+R F+ + D+YQ KKH+ PPVSL G
Sbjct: 230 WVCNFKKPETEPNS-LTPSTTVLSPYVKFGCLSARTFWWRIADIYQG-KKHSDPPVSLHG 287
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT G PNF++M+GN +C Q+ W N+ E L AW E RTGYP+IDAIM QLR
Sbjct: 288 QLLWREFFYTAGVGIPNFNKMEGNTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DW++N GNW WLS S+FF+Q
Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASTFFHQ 407
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ R+YSPV+FGKK D NG+YI+ +LP+LK P EYIYEPW AP ++Q RA CIIG+DYP
Sbjct: 408 FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPK 467
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQ 410
P+V HD ASK+ +++ AYA +V +D G+ N+ +R+
Sbjct: 468 PIVEHDVASKQNIQRMKAAYARRSGSTAEVDKDS---------GQSNKNGAKRK 512
>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
Length = 533
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 266/383 (69%), Gaps = 9/383 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP--- 58
+V A+ G+++ VSHTL++ I+ KNGG PLTY+ F + ++PLP
Sbjct: 116 EVLKIANKLGVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLPAID 175
Query: 59 ---VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
V+ + P + + +I VPT+EE+G + + + GGE+EAL++L + +
Sbjct: 176 KKMVAGCNTPTTAN--HDKIYGVPTLEEIGQEVPEESREVLYPGGETEALERLEVYMKKE 233
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+WV FEKP P++ ++P+TTVLSPY+ +GCLS+R FY L ++Y KKH+ PPVSL
Sbjct: 234 DWVCKFEKPNTAPNS-IEPSTTVLSPYMTYGCLSARLFYTRLAEIYAKKKKHSQPPVSLH 292
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FF T A+ TPNF++M GN +C Q+PW +DE LAAW EARTGYP+IDAIM QL
Sbjct: 293 GQLLWREFFTTAAYKTPNFNKMVGNSLCLQVPWDQNDEYLAAWAEARTGYPYIDAIMTQL 352
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G VF+RLLID DW +N GNW+WLS SSFF+
Sbjct: 353 RREGWVHHLARHSVACFLTRGDLWISWEEGLKVFERLLIDHDWNLNAGNWMWLSASSFFH 412
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y R+YSPV+FGKK DPNG+YIR ++P L P +YIYEPW APL +Q +A C+IGRDYP
Sbjct: 413 AYFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNAPLAVQEKAGCVIGRDYP 472
Query: 356 APVVSHDSASKECKRKLGEAYAL 378
P+V H+ ++ EA +L
Sbjct: 473 CPIVDHNKVVTRNMSRMKEARSL 495
>gi|348500170|ref|XP_003437646.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 522
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/383 (53%), Positives = 268/383 (69%), Gaps = 13/383 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLP 58
KV A G+EV VSHTL+N II++N GKPPLTY Q+ +K G P P+P
Sbjct: 112 KVTSLAKEHGVEVIYKVSHTLYNIDRIIEENNGKPPLTYTKLQAIVKTIGPP---KRPIP 168
Query: 59 V----SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
+ + + + +PT+EELG E F GGE EAL++L E +
Sbjct: 169 APTMDDMKDVKTPSSENHEKEYGIPTLEELGLDTAPLGE-DLFPGGEQEALRRLDEHMKR 227
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+WV +FEKP+ P++ L P+TTVLSPY+ FGCLS R F+ LT+VY+ KH+ PPVSL
Sbjct: 228 TKWVCSFEKPQTSPNS-LSPSTTVLSPYVTFGCLSVRTFWWRLTEVYRG-NKHSDPPVSL 285
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQLLWR+FFYT + G PNF++M+GN +C Q+ W + + LAAWREARTGYP+IDAIM Q
Sbjct: 286 HGQLLWREFFYTASLGIPNFNKMEGNSVCTQVDWDTNPDYLAAWREARTGYPFIDAIMTQ 345
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW WLS S+FF
Sbjct: 346 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEQLLLDGDWALNAGNWQWLSASTFF 405
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+QY R+YSPV+FGKK D NG+YIR +LP+LK P EYIYEPW AP +IQ A CI+G+DY
Sbjct: 406 HQYFRVYSPVAFGKKTDKNGDYIRKYLPLLKKFPAEYIYEPWKAPRSIQQAAGCIVGKDY 465
Query: 355 PAPVVSHDSASKECKRKLGEAYA 377
P P+V H+ SK+ +++ AYA
Sbjct: 466 PHPIVQHEVISKKNIQRMKLAYA 488
>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
Length = 540
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/387 (51%), Positives = 272/387 (70%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A T G++V + SHT++NP +I KN GK P+TYQ FL + Q P SP +
Sbjct: 122 VQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGSPEKL 181
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
+ + PP +V +++ + PT+E+L + EEL P F GGE+EAL+++ +S+ D+
Sbjct: 182 TNITSPPKDEVEQEDLAAYDCPTMEQLVKR---PEELGPNKFPGGETEALRRMEDSLKDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R FYQ LT++ + KH+ PPVSL+
Sbjct: 239 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFYQKLTEIIKRQSKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 298 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FFY
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFY 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCVLGTDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ K+ +++G AY +N+++
Sbjct: 478 HRIVKHEVVHKDNIKRMGAAYKVNREV 504
>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
Length = 490
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/386 (50%), Positives = 264/386 (68%), Gaps = 16/386 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
++ A G+ V SP +HTL++P ++I+ GK P TY +F +LA + +P+ S S
Sbjct: 112 IRSMAERVGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLGEPDAPV-ASPS 170
Query: 63 SLPPVG--DVGYFEISEVPTVEELGYKGYGQEELSPFRG-----GESEALKKLRESISDK 115
LPP G D Y +PT+ ELGY + P RG GE E L++L +SD+
Sbjct: 171 HLPPPGELDADY----GIPTLAELGYP----DPECPSRGIIPPGGEGEGLRRLHVYLSDR 222
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+ A F KP DP+A+ P+TT L +LKFGCLS+R FY + VY+ V +HT PP+SL+
Sbjct: 223 QRSAGFAKPDTDPTAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYREVGEHTEPPMSLI 282
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQ+LWR+FFYTV + TPN+DR++GN +C+QIPW ++ E LAAW EARTG+PWIDA M QL
Sbjct: 283 GQILWREFFYTVGYATPNYDRIEGNPVCRQIPWDDNPEYLAAWSEARTGFPWIDAAMTQL 342
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R GW+HHL+RH VACFLTRGD++V WEKG+ VF+RLL+D DW++N NW+WLS S+FF
Sbjct: 343 RTEGWLHHLSRHAVACFLTRGDLWVSWEKGQAVFERLLLDQDWSLNASNWMWLSASAFFN 402
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y R+YSP+SF KKYDP G Y+R +LP L +P E+IYEPW APL +Q +A C++GRDYP
Sbjct: 403 AYYRVYSPISFAKKYDPEGRYVRRYLPKLARVPAEFIYEPWRAPLLVQKQAGCVVGRDYP 462
Query: 356 APVVSHDSASKECKRKLGEAYALNQK 381
P+V H+ A ++ AY N K
Sbjct: 463 DPIVDHEQAKACNLERMRLAYEQNAK 488
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/384 (52%), Positives = 265/384 (69%), Gaps = 17/384 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLPV 59
V A GI+V VSHTLF+ II++N GK PLTY Q+ +K G P P+
Sbjct: 112 VTRLAEEHGIDVVCKVSHTLFDINRIIEENNGKTPLTYKSMQAIVKKLGPP-----KRPL 166
Query: 60 SLSSLPPVGDVG------YFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
S S+ + DV + + +PT+E+ G+ E F GGE EAL++L E +
Sbjct: 167 SAPSMEDLKDVNTPCSESHEKKYRIPTLEDFGHNLADLPE-EQFPGGEQEALRRLEEHMK 225
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
WV NFEKPK P++ L P+TTVLSPY+ FGCLS R F+ L+DVY+ KKH++PPVS
Sbjct: 226 RTAWVCNFEKPKTSPNS-LSPSTTVLSPYVTFGCLSVRTFWWRLSDVYEG-KKHSAPPVS 283
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT + G NF++M N +C Q+ W + E LAAWREARTG+P+IDA+M
Sbjct: 284 LHGQLLWREFFYTASVGISNFNKMVDNPVCTQVDWDINSEYLAAWREARTGFPFIDAVMT 343
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D DWA+N GNW WLS S+F
Sbjct: 344 QLRQQGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSASAF 403
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F+Q+ R+YSPV+FGKK D NG+YI+ FLP LK P EYI+EPW AP ++Q A CI+G+D
Sbjct: 404 FHQFFRVYSPVAFGKKTDKNGDYIKKFLPHLKKFPAEYIFEPWKAPQSVQQAAGCIVGKD 463
Query: 354 YPAPVVSHDSASKECKRKLGEAYA 377
YP P+V H+ SK+ +++ AYA
Sbjct: 464 YPHPIVQHEVVSKKNIQRMKAAYA 487
>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
Length = 616
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/383 (52%), Positives = 266/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MDPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ PV D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITAEVMEKCTTPVSD-DHDEKYGVPSLEELGFDTEGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L +TT LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-STTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FGK+ DPNG+YIR +LP+LK P +YIY+PW AP T+Q AKCIIG +
Sbjct: 406 FQQFFHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/414 (49%), Positives = 276/414 (66%), Gaps = 20/414 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLW-ASSPLP 58
V+ A+ ++V VS+TL+ II +N GKPPLTY Q+ L G P P
Sbjct: 113 VEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVPTQ 172
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
++ + Y E VPT+EELG +L P + GGESEAL +L +
Sbjct: 173 ENMKDCCTLWKSSYNEKYGVPTLEELGQDSL---KLGPRLYPGGESEALSRLELHMKRTT 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WV NF+KP+ +P++ L P+TTVLSPY+KFGCLS+R F+ + ++YQ KKH+ PPVSL G
Sbjct: 230 WVCNFKKPETEPNS-LTPSTTVLSPYVKFGCLSARTFWWRIAEIYQG-KKHSDPPVSLHG 287
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT G PNF++M+GN +C Q+ W N+ E L AW E RTGYP+IDAIM QLR
Sbjct: 288 QLLWREFFYTAGVGIPNFNKMEGNTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DW++N GNW WLS S+FF+Q
Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASTFFHQ 407
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ R+YSPV+FGKK D NG+YI+ +LP+LK P EYIYEPW AP ++Q RA CIIG+DYP
Sbjct: 408 FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPK 467
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQ 410
P+V HD ASK+ +++ AYA +V +D G+ N+ +R+
Sbjct: 468 PIVEHDVASKQNIQRMKAAYARRSGSTAEVDKDS---------GQSNKNGAKRK 512
>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2050
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 260/369 (70%), Gaps = 17/369 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLPV 59
V A +G++V VSHTL++ ++++N GKPPLTY Q+ +K G P P+
Sbjct: 112 VTTLAEESGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKR-----PI 166
Query: 60 SLSSLPPVGDVGY--FEISE----VPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
S S+ + V E E +PT+E+LG+ G E F GGE EAL++L + +
Sbjct: 167 SAPSMDDLKGVSTPCLEDHEKKYGIPTLEDLGHDPAGLPE-EKFPGGEQEALRRLEDQMK 225
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
WV NFEKP+ P++ L P+TTVLSPY+ FGCLS+R F+ L+DVY KKH++PPVS
Sbjct: 226 KTSWVCNFEKPQTSPNS-LSPSTTVLSPYVTFGCLSARTFWWRLSDVYSG-KKHSAPPVS 283
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT + G PNF++M N +C Q+ W D E LAAWREARTG+P+IDAIM
Sbjct: 284 LHGQLLWREFFYTASVGIPNFNKMADNPVCTQVDWDTDSEYLAAWREARTGFPFIDAIMT 343
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D DWA+N GNW WLS S+F
Sbjct: 344 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSASAF 403
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F+Q+ R+YSPV+FGKK D NG+YI+ +LP LK P +YIYEPW AP +IQ A CIIG+D
Sbjct: 404 FHQFFRVYSPVAFGKKTDKNGDYIKKYLPHLKKFPAQYIYEPWKAPQSIQKAAGCIIGKD 463
Query: 354 YPAPVVSHD 362
YP P+V H+
Sbjct: 464 YPHPIVKHE 472
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/419 (48%), Positives = 279/419 (66%), Gaps = 17/419 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A + G++V + SHT++NP +I KN GK P+TYQ FL + + P P +
Sbjct: 122 VQKLAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPTVLDLPEKL 181
Query: 60 SLSSLPPVGDVGY--FEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP D+ E + PT+E+L + E+L P F GGE+EAL+++ ES+ D+
Sbjct: 182 KEKVQPPKDDIEEKDSEAYDCPTMEQLVKR---PEDLGPLKFPGGETEALRRMEESLKDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLSSR F+Q L ++ + KH+ PPVSL+
Sbjct: 239 LWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSSRLFHQRLKEILKRQTKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQ++WR+F+YTVA PNFDRM GN C QIPW + L AW +TGYP+IDAIM QL
Sbjct: 298 GQMMWREFYYTVAAAEPNFDRMLGNVYCLQIPWEEHPDHLKAWTYGQTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP GNYIR ++P L P IYEPW A L+ Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGNYIRKYVPELAKYPAGCIYEPWKASLSDQRAYGCVLGTDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKT 414
+V H+ KE +++G AY +N+++ ED + E E SG+R+ KT
Sbjct: 478 HRIVKHEVVHKENIKRMGAAYKVNREVRTGKQEDSFE------EKPETSTSGKRKLGKT 530
>gi|404312667|ref|NP_001017311.2| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
Length = 618
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/383 (51%), Positives = 267/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ PV D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITAEVMEKCTTPVLD-DHDEKYGVPSLEELGFDTEGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L +TT LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-STTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LP+LK P +YIY+PW AP T+Q AKCIIG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
Length = 616
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/383 (52%), Positives = 266/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MDPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ PV D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITAEVMEKCTTPVSD-DHDEKYGVPSLEELGFDTEGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L +TT LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-STTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPCFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FGK+ DPNG+YIR +LP+LK P +YIY+PW AP T+Q AKCIIG +
Sbjct: 406 FQQFFHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
Length = 546
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/419 (50%), Positives = 277/419 (66%), Gaps = 11/419 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-PLWASSPLPVSL 61
V+ A AGI+V + SHT++NP +I KN GK P+TYQ FL L + L P L
Sbjct: 123 VQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLAKVLDKPEKL 182
Query: 62 SSLP-PVGDVGYFE---ISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
+L P D E + + P+ E+L K EL P F GGE+E L+++ +S++D+
Sbjct: 183 DALTQPSRDELEQENDKVYDCPSQEQLVKKP---NELGPNIFPGGETEGLRRMEDSLNDE 239
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLSSR FYQ L ++ KH+ PPVSLV
Sbjct: 240 LWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSSRLFYQRLKEILAKHPKHSQPPVSLV 298
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQ+LWR+F+YTVA PNFDRM GN C QIPW E L AW RTGYP+IDAIM QL
Sbjct: 299 GQVLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEHPEHLEAWTYGRTGYPFIDAIMRQL 358
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 359 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 418
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP GNYIR + P L + P + IYEPW A L Q C++G DYP
Sbjct: 419 QYFRVYSPVAFGKKTDPQGNYIRKYCPELANYPNKQIYEPWLATLQAQREYGCVLGEDYP 478
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKT 414
+V H+ KE +K+ EAY +N+++ ED + N ++ +G+R+ K
Sbjct: 479 HRIVKHELVHKENIKKMSEAYKINREVRTGKQEDSMLNDDNDELEDDRSATGKRKGNKA 537
>gi|187608706|ref|NP_001120012.1| uncharacterized protein LOC100144974 [Xenopus (Silurana)
tropicalis]
gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/414 (49%), Positives = 276/414 (66%), Gaps = 20/414 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLW-ASSPLP 58
V+ A+ ++V VS+TL+ II +N GKPPLTY Q+ L G P P
Sbjct: 113 VEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVPTQ 172
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
++ + Y E VPT+EELG +L P + GGESEAL +L +
Sbjct: 173 ENMKDCCTLWKSSYNEKYGVPTLEELGQDSL---KLGPRLYPGGESEALSRLELHMKRTT 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WV NF+KP+ +P++ L P+TTVLSPY+KFGCLS+R F+ + ++YQ KKH+ PPVSL G
Sbjct: 230 WVCNFKKPETEPNS-LTPSTTVLSPYVKFGCLSARTFWWRIAEIYQG-KKHSDPPVSLHG 287
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT G PNF++M+GN +C Q+ W N+ E L AW E RTGYP+IDAIM QLR
Sbjct: 288 QLLWREFFYTAGVGIPNFNKMEGNIVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLR 347
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DW++N GNW WLS S+FF+Q
Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASTFFHQ 407
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ R+YSPV+FGKK D NG+YI+ +LP+LK P EYIYEPW AP ++Q RA CIIG+DYP
Sbjct: 408 FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPK 467
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQ 410
P+V HD ASK+ +++ AYA +V +D G+ N+ +R+
Sbjct: 468 PIVEHDVASKQNIQRMKAAYARRSGSTAEVDKDS---------GQSNKNGAKRK 512
>gi|28279917|gb|AAH44204.1| Cry5 protein, partial [Danio rerio]
Length = 545
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/386 (52%), Positives = 267/386 (69%), Gaps = 19/386 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLP 58
+V A G+EV +SHTL+N II +N GK P+TY QS +K G P P+P
Sbjct: 138 EVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHP---KKPIP 194
Query: 59 VSLSS-----LPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRES 111
+ P+ D + E +PT+E+LG L P F GGE EAL++L E
Sbjct: 195 APTNEDMRGVSTPLSD-DHEEKFGIPTLEDLGL---DTSSLGPHLFPGGEQEALRRLDEH 250
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
+ WV FEKPK P++ L P+TTVLSPY++FGCLS+R F+ L DVY+ K H+ PP
Sbjct: 251 MERTNWVCKFEKPKTSPNS-LIPSTTVLSPYVRFGCLSARIFWWRLADVYRG-KTHSDPP 308
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
VSL GQLLWR+FFYT A G PNF++M+GN C Q+ W N+ E LAAWREARTG+P+IDAI
Sbjct: 309 VSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDWDNNPEHLAAWREARTGFPFIDAI 368
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QLR+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+DSDW++N GNW WLS S
Sbjct: 369 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSAS 428
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+FF+QY R+YSP++FGKK D +G+YI+ +LPVLK P EYIYEPW AP ++Q RA CI+G
Sbjct: 429 TFFHQYFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVG 488
Query: 352 RDYPAPVVSHDSASKECKRKLGEAYA 377
+DYP P+V H+ K+ ++ AYA
Sbjct: 489 KDYPRPIVDHEVVHKKNILRMKAAYA 514
>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
Length = 605
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/383 (51%), Positives = 267/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 106 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 161
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ PV D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 162 TITAEVMEKCTTPVLD-DHDEKYGVPSLEELGFDTEGLPS-AVWPGGETEALTRLERHLE 219
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L +TT LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 220 RKAWVANFERPRMNANSLLA-STTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 278
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 279 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 338
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSF
Sbjct: 339 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 398
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LP+LK P +YIY+PW AP T+Q AKCIIG +
Sbjct: 399 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVN 458
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 459 YPKPMVNHAEASRLNIERMKQIY 481
>gi|449482006|ref|XP_002196554.2| PREDICTED: cryptochrome-1 [Taeniopygia guttata]
Length = 715
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/380 (51%), Positives = 265/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 208 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 267
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 268 EVMKKCTTPVSDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 324
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 325 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 383
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 384 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 443
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 444 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 503
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +YP
Sbjct: 504 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPK 563
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 564 PMVNHAEASRLNIERMKQIY 583
>gi|82091801|sp|Q6ZZY0.1|CRY1_SYLBO RecName: Full=Cryptochrome-1
gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
Length = 620
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/380 (51%), Positives = 265/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 173 EVMKKCTTPVSDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
Length = 519
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/386 (52%), Positives = 266/386 (68%), Gaps = 19/386 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLP 58
+V A G+EV +SHTL+N II +N GK P+TY QS +K G P P+P
Sbjct: 112 EVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHP---KKPIP 168
Query: 59 VSLSS-----LPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRES 111
+ P+ D + E +PT+E+LG L P F GGE EAL++L E
Sbjct: 169 APTNEDMRGVSTPLSD-DHEEKFGIPTLEDLGL---DTSSLGPHLFPGGEQEALRRLDEH 224
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
+ WV FEKPK P++ L P+TTVLSPY++FGCLS+R F+ L DVY+ K H+ PP
Sbjct: 225 MERTNWVCKFEKPKTSPNS-LIPSTTVLSPYVRFGCLSARTFWWRLADVYRG-KTHSDPP 282
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
VSL GQLLWR+FFYT A G PNF++M+GN C Q+ W N+ E LAAWREARTG+P+ID I
Sbjct: 283 VSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDWDNNPEHLAAWREARTGFPFIDTI 342
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QLR+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+DSDW++N GNW WLS S
Sbjct: 343 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSAS 402
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+FF+QY R+YSP++FGKK D +G+YI+ +LPVLK P EYIYEPW AP ++Q RA CI+G
Sbjct: 403 TFFHQYFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVG 462
Query: 352 RDYPAPVVSHDSASKECKRKLGEAYA 377
+DYP P+V H+ K+ ++ AYA
Sbjct: 463 KDYPRPIVDHEVVHKKNILRMKAAYA 488
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/428 (47%), Positives = 270/428 (63%), Gaps = 50/428 (11%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA---GQPLWA-----S 54
V+ AG+E S HTL++ +++ K GKPP TY FLK+ G P A +
Sbjct: 121 VRGALERAGVECASSSGHTLYDVEEMLAKCHGKPPTTYSQFLKIVDKMGAPAAALDAPKA 180
Query: 55 SPLPVSLSSLPPVGDV-GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
P P + ++ V G + +PT+EELGY+ +E GGE+E L++LR +S
Sbjct: 181 MPAPFTGTAEETKELVAGVADAYGIPTLEELGYEAMHDDEGFQAIGGETEGLRRLRRQLS 240
Query: 114 DKEWVANFEKPKGDPSAY--------------------------------------LKPA 135
EWV F+KP +P+ + P+
Sbjct: 241 RTEWVHTFQKPDTNPTTLFHALGAKKPKPKSPFEIAARDAGSKNDATNTAANSDMLMTPS 300
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDV---YQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP 192
TT LSPY+KFGC+S R FY L V ++ + + PPVSL+GQL+WR+F+Y V GTP
Sbjct: 301 TTALSPYMKFGCVSPRVFYHELNAVLAKFEGKGQPSQPPVSLMGQLMWREFYYLVGAGTP 360
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
NFD+M+GN IC+QIPW+ D EL AAW A+TG+PWIDA M QLR GW+HHLARH VACF
Sbjct: 361 NFDKMEGNPICRQIPWNKDRELFAAWENAQTGFPWIDAAMTQLRLEGWIHHLARHAVACF 420
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDP 312
LTRGD+FVHWE GRD FDR L+D+DWA+NNGNW+WLSCS FFYQY R+Y P SF KKYD
Sbjct: 421 LTRGDLFVHWEWGRDTFDRDLVDADWALNNGNWMWLSCSCFFYQYFRVYGPHSFAKKYDK 480
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
+G Y++H+LPVLK+MP +Y+YEPW APL +Q +A C++G DYPAP+V H +ASK C K+
Sbjct: 481 DGAYVKHYLPVLKNMPAKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHATASKACIDKI 540
Query: 373 GEAYALNQ 380
AYA ++
Sbjct: 541 ATAYAAHK 548
>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
Length = 611
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/380 (51%), Positives = 265/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 103 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 162
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
V PV D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 163 -EVMQKCTTPVSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 219
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 220 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 278
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 279 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 338
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 339 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 398
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP ++Q AKC+IG +YP
Sbjct: 399 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPK 458
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 459 PMVNHAEASRLNIERMKQIY 478
>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
gi|82104700|sp|Q8QG61.1|CRY1_CHICK RecName: Full=Cryptochrome-1
gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
Length = 621
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/380 (51%), Positives = 265/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 173 EVMQKCTTPVSDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP ++Q AKC+IG +YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>gi|449276417|gb|EMC84949.1| Cryptochrome-1, partial [Columba livia]
Length = 570
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/380 (51%), Positives = 265/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ + L + P+ +P
Sbjct: 63 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRYQTLISRMEPLEMPVETITP 122
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 123 EVMEKCTTPVSDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 179
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 180 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 238
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 239 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 298
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 299 QEGWIHHLARHAVACFLTRGDLWISWEEGVKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 358
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +YP
Sbjct: 359 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPK 418
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 419 PMVNHAEASRLNIERMKQIY 438
>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
Length = 587
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/380 (51%), Positives = 265/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 173 EVMKKCTTPVSDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>gi|345326794|ref|XP_001508613.2| PREDICTED: cryptochrome-1-like [Ornithorhynchus anatinus]
Length = 721
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/379 (51%), Positives = 263/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
+K AS AG+EV +SHTL+ II+ NGG+PPLTY+ F L + + P+
Sbjct: 218 IKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMDPLAMPVETITA 277
Query: 59 -VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
V + P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 278 EVMGKCMTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKAW 335
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 336 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 394
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 395 LLWREFFYTAATSNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQ 454
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 455 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 514
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKCIIG +YP P
Sbjct: 515 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKAAKCIIGVNYPKP 574
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 575 MVNHAEASRLNIERMKQIY 593
>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
Length = 526
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/420 (49%), Positives = 281/420 (66%), Gaps = 30/420 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLP 58
+V+ A+ ++V VS+TL++ II +N GKPPLTY Q+ L G P P
Sbjct: 112 EVEKLAAEHDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLAPLGPP-----KRP 166
Query: 59 VSLSSLPPVGDV------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRE 110
+ +L + D Y E VPT+EELG +L P + GGESEAL +L
Sbjct: 167 IKAPTLENMKDCHTPWKSSYDEKYGVPTLEELGQDPM---KLGPHLYPGGESEALSRLDL 223
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP 170
+ WV NF+KP+ +P++ L P+TTVLSPY+KFGCLS+R F+ + D+YQ KKH+ P
Sbjct: 224 HMKRTSWVCNFKKPETEPNS-LTPSTTVLSPYVKFGCLSARTFWWKIADIYQG-KKHSDP 281
Query: 171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
PVSL GQLLWR+F+YT G PNF++M+GN +C Q+ W N+ E L AW E RTGYP+IDA
Sbjct: 282 PVSLHGQLLWREFYYTTGAGIPNFNKMEGNPVCVQVDWDNNKEHLEAWSEGRTGYPFIDA 341
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
IM QLR GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DW++N GNWLWLS
Sbjct: 342 IMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWLWLSA 401
Query: 291 SSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
S+FF+Q+ R+YSPV+FGKK D NG+YI+ +LP+LK P EYIYEPW +P ++Q RA CII
Sbjct: 402 SAFFHQFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKSPRSLQERAGCII 461
Query: 351 GRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQ 410
G+DYP P+V H+ SK+ +++ AYA V +D G+ N++ G+R+
Sbjct: 462 GKDYPKPIVEHNVVSKQNIQRMKAAYARRSGSTEGVDKDS---------GQNNKKGGKRK 512
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
Length = 533
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/395 (50%), Positives = 268/395 (67%), Gaps = 11/395 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A GI+V + SHT++NP +I KN GK P+TYQ FL + Q P P +
Sbjct: 122 VQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVDQLKVPKVLELPEKL 181
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
+ +LPP +V + + + PT+E+L + E+L P F GGE+E L++++ES+ D+
Sbjct: 182 AKKALPPKDEVEQQDDNAYDCPTLEQLVKRP---EDLGPNKFPGGETEGLRRMKESLRDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F+Q L + + KH+ PPVSL+
Sbjct: 239 LWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFHQQLKAILKRQSKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 298 GQLLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
+V H+ KE +++ AY +N++ ED
Sbjct: 478 HRIVKHELVHKENIKRMSAAYKVNREARTGKEEDS 512
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata]
Length = 589
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 277/427 (64%), Gaps = 21/427 (4%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V VSHTL+ +II+KNGGKPPLTY F + P
Sbjct: 125 RVRDHNISALCKELGISVVQKVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVACMDVPEPP 184
Query: 57 LPVSL-----SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP-FRGGESEALKKLRE 110
+P S+ PV + + + VPT+EELG+ G L P + GGESEAL +L
Sbjct: 185 VPTVTFACVGSAYTPVKE-DHDDHYGVPTLEELGFDTEGL--LPPVWVGGESEALARLER 241
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP 170
+ K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK P
Sbjct: 242 HLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-AVP 299
Query: 171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
P+SL GQLLWR+FFY A PNFDRM+GN IC QIPW + E LA W +TG+PWIDA
Sbjct: 300 PLSLHGQLLWREFFYCAATNNPNFDRMQGNPICVQIPWDKNIEALAKWANGQTGFPWIDA 359
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
IM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLSC
Sbjct: 360 IMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSC 419
Query: 291 SSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
SSFF Q+ Y P+ FG+K DPNG+YIR +LPVLK+ P YI+EPW APL++Q AKCII
Sbjct: 420 SSFFQQFFHCYCPIRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQRAAKCII 479
Query: 351 GRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVS-----EDGLKNLRRKFEGEENQE 405
G+DYP P+V+H +S+ ++ + Y K G + GL N + N+E
Sbjct: 480 GKDYPLPMVNHSKSSRINIERMKQVYQQLNKYRGNGAPIKGETVGLLNTLSPPVTKGNEE 539
Query: 406 SGRRQKQ 412
++Q Q
Sbjct: 540 EKKKQVQ 546
>gi|426374041|ref|XP_004053891.1| PREDICTED: cryptochrome-1 [Gorilla gorilla gorilla]
Length = 583
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 264/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + +P+ S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLETPVETITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
Length = 621
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/383 (51%), Positives = 264/383 (68%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL+ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISR----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ PV D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITAEVMSKCTTPVSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +Q AKCIIG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQMY 488
>gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
Length = 556
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/433 (47%), Positives = 277/433 (63%), Gaps = 24/433 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+ PLTY+ F L + +P +
Sbjct: 113 IKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVVTPAETITA 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVMGPCTTPLSD-DHDEKFGVPSLEELGFDTEGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PVSFG++ DPNG+YIR +LPVL+ P +YIY+PW AP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMP 469
Query: 358 VVSHDSASK-------------ECKRKLGEAYALNQKLNGQV---SEDGLKNLRRKFEGE 401
+V H AS+ C R LG + NG +D + R
Sbjct: 470 MVHHAEASRLNIERMKQIYQQLSCYRGLGLLAMVPSNPNGSTMCYRQDAQQITGRGLHSS 529
Query: 402 ENQESGRRQKQKT 414
Q SG+R +++
Sbjct: 530 IIQTSGKRHSEES 542
>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
Length = 589
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/383 (51%), Positives = 264/383 (68%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL+ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISR----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ PV D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITAEVMSKCTTPVSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +Q AKCIIG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQMY 488
>gi|334348060|ref|XP_003342014.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Monodelphis
domestica]
Length = 585
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/379 (51%), Positives = 265/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + ++P+
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLATPVETITP 172
Query: 59 -VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
V + P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVMHKCVTPLSD-EHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
Length = 623
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 263/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
+K A+ AG+EV +SHTL++ II+ NGG+ PLTY+ F L + +P
Sbjct: 113 IKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITA 172
Query: 59 -VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
V + PV D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVMGTCTTPVSD-DHDEKFGVPSLEELGFDTEGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS + FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCQLFYFKLTDLYRKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTTATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PVSFG++ DPNG+YIR +LPVL+ P +YIY+PWTAP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWTAPESVQKAAKCIIGVHYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V H AS+ ++ + Y
Sbjct: 470 MVHHAEASRLNIERMKQIY 488
>gi|354486342|ref|XP_003505340.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Cricetulus
griseus]
Length = 583
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P S
Sbjct: 109 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPAETITS 168
Query: 63 S-----LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 169 DVIGKCMTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 226
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 227 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 285
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 286 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 345
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 346 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 405
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 406 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 465
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 466 MVNHAEASRLNIERMKQIY 484
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
Length = 538
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 271/383 (70%), Gaps = 9/383 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A++ G++V + SHT++NP +I +N GKPP+TYQ FL + + P + P +
Sbjct: 122 VQQLAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFLGIVEKLKLPKVLNKPKKL 181
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
+ P+ D +I + PT+E+L K ++ F GGESEAL+++ S++D++WVA
Sbjct: 182 P-DGMQPLADS---DIYDYPTLEQL-VKRPEDLGINKFPGGESEALRRMEASLADEQWVA 236
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
FEKPK P++ L+P+TTVLSPYLKFGCLS+R F++ L ++ KH+ PPVSLVGQLL
Sbjct: 237 KFEKPKTAPNS-LEPSTTVLSPYLKFGCLSARLFHERLQEILARQPKHSKPPVSLVGQLL 295
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+F+YTVA PNFDRM GN C QIPW E L AW RTGYP+IDAIM QLR+ G
Sbjct: 296 WREFYYTVAAAEPNFDRMLGNAYCLQIPWQEQPEHLEAWAHGRTGYPFIDAIMRQLRQEG 355
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+QY R
Sbjct: 356 WIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFR 415
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+YSPV+FGKK DP G+YI+ ++P L P + IYEPW A L Q C++G DYP +V
Sbjct: 416 VYSPVAFGKKTDPKGDYIKKYVPELAKYPAKCIYEPWKATLGEQRDYGCVLGSDYPHRIV 475
Query: 360 SHDSASKECKRKLGEAYALNQKL 382
+HD KE +++ +AY +N+++
Sbjct: 476 NHDVVHKENIKRMSDAYKVNREV 498
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
Length = 540
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/387 (50%), Positives = 267/387 (68%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A AG++V + SHT++NP +I KN GK P+TYQ FL + Q P +P +
Sbjct: 122 VQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGAPEKL 181
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
+ PP +V + + + PT+E+L + EEL P F GGE+EAL+++ +S+ D+
Sbjct: 182 QNITTPPNDEVEQEDSAAYDCPTMEQLVKR---PEELGPNKFPGGETEALRRMEDSLKDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 239 LWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW L AW RTGYP+IDAIM QL
Sbjct: 298 GQLMWREFYYTVAAAEPNFDRMMGNVYCMQIPWQEHPNHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCVLGTDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 478 HRIVKHEVVHKENIKRMGAAYKVNREV 504
>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
Length = 587
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ PV D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSDVIEKCTTPVSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E +TG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGQTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGIN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+ PLTY+ F L + +P +
Sbjct: 113 IKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITA 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVMGPCTTPLSD-DHDEKFGVPSLEELGFDTEGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PVSFG++ DPNG+YIR +LPVL+ P +YIY+PW AP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V H AS+ ++ + Y
Sbjct: 470 MVHHAEASRLNIERMKQIY 488
>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1 [Pongo abelii]
Length = 586
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 263/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|390979651|ref|NP_001070765.2| cryptochrome 1a [Danio rerio]
gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+ PLTY+ F L + +P +
Sbjct: 113 IKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITA 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVMGPCTTPLSD-DHDEKFGVPSLEELGFDTEGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PVSFG++ DPNG+YIR +LPVL+ P +YIY+PW AP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V H AS+ ++ + Y
Sbjct: 470 MVHHAEASRLNIERMKQIY 488
>gi|410965445|ref|XP_003989258.1| PREDICTED: cryptochrome-1 [Felis catus]
Length = 587
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/379 (51%), Positives = 263/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
L P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 ELIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
Length = 586
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 263/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
gi|397525251|ref|XP_003832588.1| PREDICTED: cryptochrome-1 [Pan paniscus]
gi|410216796|gb|JAA05617.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410256668|gb|JAA16301.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410295158|gb|JAA26179.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410354849|gb|JAA44028.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
Length = 586
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
gi|74735764|sp|Q16526.1|CRY1_HUMAN RecName: Full=Cryptochrome-1
gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
Length = 586
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 555
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/418 (48%), Positives = 275/418 (65%), Gaps = 9/418 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 DVIGKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
+V+H AS+ ++ + Y + G G + G+ Q + +Q + ++
Sbjct: 470 MVNHAEASRLNIERMKQIYQQLSRYRGLDCSQG-SGILHYAHGDSQQTNPLKQGRSSM 526
>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
gi|402887532|ref|XP_003907145.1| PREDICTED: cryptochrome-1 [Papio anubis]
gi|355564646|gb|EHH21146.1| hypothetical protein EGK_04148 [Macaca mulatta]
gi|355786488|gb|EHH66671.1| hypothetical protein EGM_03711 [Macaca fascicularis]
gi|380809804|gb|AFE76777.1| cryptochrome-1 [Macaca mulatta]
gi|383415927|gb|AFH31177.1| cryptochrome-1 [Macaca mulatta]
gi|384945408|gb|AFI36309.1| cryptochrome-1 [Macaca mulatta]
Length = 586
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGIN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|403275987|ref|XP_003929699.1| PREDICTED: cryptochrome-1 [Saimiri boliviensis boliviensis]
Length = 586
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
gi|81882230|sp|P97784.1|CRY1_MOUSE RecName: Full=Cryptochrome-1
gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
Length = 606
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172
Query: 63 S-----LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 DVIGKCMTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|118572249|sp|Q5IZC5.2|CRY1_ERIRU RecName: Full=Cryptochrome-1
gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
Length = 620
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/380 (51%), Positives = 264/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 173 EVMKKCTTPVFDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 SVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
Length = 618
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITA 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ PV D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVMSKCTTPVSD-DHDEKCGVPSLEELGFDTGGLPS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLAR VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +Q AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCVIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHTEASRLNIERMKQIY 488
>gi|73969270|ref|XP_862753.1| PREDICTED: cryptochrome-1 isoform 2 [Canis lupus familiaris]
Length = 587
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVVEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
gi|118572250|sp|Q32Q86.1|CRY1_RAT RecName: Full=Cryptochrome-1
gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 588
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 DVIGKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
Length = 588
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 DVIGKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|405952216|gb|EKC20054.1| Cleavage stimulation factor 77 kDa subunit [Crassostrea gigas]
Length = 1237
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/381 (51%), Positives = 257/381 (67%), Gaps = 12/381 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
++ A AG+EV SHTL++ II NGG PPLTY+ F + + S P S
Sbjct: 808 IQMLAKEAGVEVIVKTSHTLYDLQKIIAMNGGSPPLTYKRFQSVLAKMEAPSEPEETINS 867
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
P+ + + + VPT+EELG+ G L P F GGE+EAL +L + K
Sbjct: 868 GFLVKTKTPIAE-DHDDKYGVPTLEELGFDTEG---LGPAVFHGGEAEALTRLERHLERK 923
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA+FE+PK + L P+ VLSPYL+FGCLS+R FY L ++Y+ VKK PP+SL
Sbjct: 924 AWVASFERPKMSQQS-LFPSQNVLSPYLRFGCLSARLFYWKLRELYRKVKKRKDPPLSLH 982
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYTVA PNFDRMK N +C QIPW + E LA W E +TG+PWIDAIM+QL
Sbjct: 983 GQLLWREFFYTVATNNPNFDRMKDNPLCVQIPWDKNPEALAKWAEGKTGFPWIDAIMMQL 1042
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+H+LARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSFF
Sbjct: 1043 RQTGWIHNLARHSVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFFQ 1102
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Q+ Y PV FGK+ DP G++IR +LPVLK P +YIYEPWTAP ++Q AKCIIG+DYP
Sbjct: 1103 QFFHCYCPVGFGKRADPTGDFIRTYLPVLKGYPAKYIYEPWTAPESVQRAAKCIIGKDYP 1162
Query: 356 APVVSHDSASKECKRKLGEAY 376
P+V+H SK ++ + Y
Sbjct: 1163 VPMVNHAEVSKLNTGRMKQVY 1183
>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
Length = 587
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
Length = 587
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/387 (50%), Positives = 265/387 (68%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A G++V + SHT++NP +I KN GK P+TYQ FL + Q P P +
Sbjct: 122 VQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGVPEKL 181
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP +V + + + PT+E+L + EEL P F GGE+EAL+++ ES+ D+
Sbjct: 182 KKMHTPPKDEVEQKDSAAYDCPTMEQLVKR---PEELGPNKFPGGETEALRRMEESLKDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 239 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 298 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCVLGTDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 478 HRIVKHEVVHKENIKRMGAAYKVNREV 504
>gi|75048080|sp|Q8WP19.1|CRY1_MACFA RecName: Full=Cryptochrome-1
gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
Length = 586
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VK+++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKRNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGIN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1 [Sus scrofa]
Length = 588
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
Length = 587
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIIRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVMEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|417403044|gb|JAA48347.1| Putative deoxyribodipyrimidine photolyase/cryptochrome [Desmodus
rotundus]
Length = 587
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LP+L+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
Length = 540
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/387 (50%), Positives = 265/387 (68%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A G++V + SHT++NP +I KN GK P+TYQ FL + Q P P +
Sbjct: 122 VQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGVPEKL 181
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP +V + + + PT+E+L + EEL P F GGE+EAL+++ ES+ D+
Sbjct: 182 KKMPTPPKDEVEQKDSAAYDCPTMEQLVKR---PEELGPNKFPGGETEALRRMEESLKDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 239 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 298 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQKHPDHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCVLGTDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 478 HRIVKHEVVHKENIKRMGAAYKVNREV 504
>gi|387015300|gb|AFJ49769.1| Cryptochrome-1-like [Crotalus adamanteus]
Length = 622
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/379 (51%), Positives = 263/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+
Sbjct: 113 IKKLATEAGLEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITA 172
Query: 59 -VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
V + + PV D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVMSTCITPVSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGVKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LP+L+ P +YIY+PW AP +Q AKC IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNAPEGVQKAAKCTIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
Length = 587
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/380 (51%), Positives = 264/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 173 EVMKKCTTPVFDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 SVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>gi|344266586|ref|XP_003405361.1| PREDICTED: cryptochrome-1-like [Loxodonta africana]
Length = 583
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIGKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|348553110|ref|XP_003462370.1| PREDICTED: cryptochrome-1-like [Cavia porcellus]
Length = 675
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/383 (51%), Positives = 264/383 (68%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVVEKCVTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD++V WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWVSWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V H AS+ ++ + Y
Sbjct: 466 YPKPMVHHAEASRLNIERMKQIY 488
>gi|395819912|ref|XP_003783322.1| PREDICTED: cryptochrome-1 [Otolemur garnettii]
Length = 587
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/378 (51%), Positives = 261/378 (69%), Gaps = 6/378 (1%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172
Query: 63 SLPPVGDVGYFEISE----VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+ F+ + VP++EELG+ G + + GGE+EAL +L + K WV
Sbjct: 173 EIIEKCTTPLFDDHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKAWV 231
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
ANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQL
Sbjct: 232 ANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQL 290
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 291 LWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFF 410
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
Y P SFG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P+
Sbjct: 411 HCYCPASFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPM 470
Query: 359 VSHDSASKECKRKLGEAY 376
V+H AS+ ++ + Y
Sbjct: 471 VNHAEASRLNIERMKQIY 488
>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
Length = 788
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/398 (50%), Positives = 269/398 (67%), Gaps = 18/398 (4%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL-AGQPLWASS 55
+V+D+ T GI V S VSHTL+ II++NGGK PLTY F L A P +
Sbjct: 138 RVRDHNITTKCREVGINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPQPA 197
Query: 56 PLPVSLSSL----PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLR 109
P+S+ +L PV V + + VPT+EELG++ E+L P + GGESEAL +L
Sbjct: 198 EAPISIETLNGAKTPVS-VDHDDRFGVPTLEELGFET---EDLKPPMWMGGESEALARLD 253
Query: 110 ESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS 169
+ K WVA+F +PK P + L + T LSPYL+FGCLS+R FY LT++Y+ +K+
Sbjct: 254 RHLERKAWVASFGRPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTELYKKIKR-VR 311
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229
PP+SL GQ+LWR+FFY A PNFDRM+GN IC QIPW + E L+ W +TGYPWID
Sbjct: 312 PPLSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPWEKNQEALSKWANGQTGYPWID 371
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
AIM+QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD L++D+DW++N G W+WLS
Sbjct: 372 AIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELMLDADWSVNAGMWMWLS 431
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
CSSFF Q+ Y PV FG+K DPNG++IR ++P LK+MP YI+EPW AP ++Q A+C+
Sbjct: 432 CSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWVAPESVQQAAQCV 491
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVS 387
+G DYP P++ H AS+ ++ + YA K QV+
Sbjct: 492 VGCDYPLPMLDHTKASQINLERIKQVYAQLAKYKPQVT 529
>gi|296487421|tpg|DAA29534.1| TPA: cryptochrome 1 (photolyase-like) [Bos taurus]
Length = 543
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|404313305|gb|AFR54427.1| cryptochrome 2 [Mythimna separata]
Length = 757
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/375 (52%), Positives = 258/375 (68%), Gaps = 13/375 (3%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL-AGQPLWASSPLPVSLSSL---- 64
GI V S VSHTL+ II++NGGK PLTY F L A P + P++ +L
Sbjct: 139 VGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPKAEAPITAQTLNGAT 198
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFE 122
PV D + + VPT+EELG++ G L P + GGESEAL +L + K WVA+F
Sbjct: 199 TPVTD-DHDDRFGVPTLEELGFETEG---LKPPVWVGGESEALARLERHLERKAWVASFG 254
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+PK P + L + T LSPYL+FGCLS+R FY LT++Y+ VK+ PP+SL GQ+LWR+
Sbjct: 255 RPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTELYKRVKR-VRPPLSLHGQILWRE 312
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFY A PNFDRM+GN IC QIPW + E LA W +TGYPWIDAI++QLR+ GW+H
Sbjct: 313 FFYCAATRNPNFDRMEGNPICVQIPWEKNQEALAKWASGQTGYPWIDAIIIQLREEGWIH 372
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLSCSSFF Q+ Y
Sbjct: 373 HLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 432
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG+K DPNG++IR ++P LK+MP YI+EPW AP ++Q A+CIIGRDYP P+V H
Sbjct: 433 PVRFGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPESVQQSARCIIGRDYPMPMVDHA 492
Query: 363 SASKECKRKLGEAYA 377
AS+ ++ + YA
Sbjct: 493 KASQVNIERIKQVYA 507
>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
Length = 535
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/412 (50%), Positives = 277/412 (67%), Gaps = 19/412 (4%)
Query: 3 VKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL-AGQPLWASSP 56
V+D+ T GI V VSHTL++ DII +NGG+ PLTY FL + A
Sbjct: 122 VRDHNLTTLCQELGISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACMGPPPQPE 181
Query: 57 LPVSLSSL----PPVGDVGYFEISEVPTVEELGYKGYGQEELSP-FRGGESEALKKLRES 111
PV+ +SL P+ D + E VPT+EELG+ G+ L P ++GGESEAL +L
Sbjct: 182 PPVTFNSLNGAHTPLTD-DHDEKYGVPTLEELGFDTEGR--LPPVWQGGESEALARLERH 238
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
+ K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK PP
Sbjct: 239 LERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-AFPP 296
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
+SL GQLLWR+FFY A PNFD+M GN IC QIPW + E LA W +TG+PWIDAI
Sbjct: 297 LSLHGQLLWREFFYCAATKNPNFDKMIGNPICVQIPWDKNAEALAKWANGQTGFPWIDAI 356
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCS
Sbjct: 357 MTQLREEGWIHHLARHAVACFLTRGDLWLSWEEGMKVFEELLLDADWSVNAGMWMWLSCS 416
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
SFF Q+ Y P+ FG+K DPNG+YIR +LPVLK+MP +YI+EPWTAP +Q AKCIIG
Sbjct: 417 SFFQQFFHCYCPIKFGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAAKCIIG 476
Query: 352 RDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEEN 403
+DY P+V+H +AS+ +++ + Y Q+L+ + D + F+ + N
Sbjct: 477 KDYSLPMVNHAAASRVNIQRMKQVY---QQLSNYRNVDNSAKFKDGFQEQPN 525
>gi|443710319|gb|ELU04573.1| hypothetical protein CAPTEDRAFT_178510 [Capitella teleta]
Length = 597
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/402 (49%), Positives = 261/402 (64%), Gaps = 10/402 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
+ AGIEV SHTLFN I+ KN G PPLTY+ F ++ + P PV +
Sbjct: 132 SQDAGIEVIIKTSHTLFNLQKILDKNSGVPPLTYKRFQRILAR--MDPPPRPVEAVTSVT 189
Query: 67 VGDV------GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+G V + + VPT+E+LG+ E + ++GGE+EAL +L + K WVA+
Sbjct: 190 IGSVVTPINSDHDDQYGVPTLEDLGFDT-DNLEAAVWKGGETEALSRLDRHLERKAWVAS 248
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPK P + L + T LSPYL+FGCLS+R FY LTD+Y+ VKK T P+S+ GQLLW
Sbjct: 249 FEKPKMTPQS-LMASPTGLSPYLRFGCLSTRLFYWRLTDLYRKVKKRTDMPLSIHGQLLW 307
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM GN IC Q+PW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 308 REFFYTAATNNPKFDRMVGNPICVQVPWDKNPEALAKWAECKTGFPWIDAIMTQLRQEGW 367
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD+++ WE+G VF+ L+D+DW+IN G WLWLSCSSFF Q+
Sbjct: 368 IHHLARHSVACFLTRGDLWISWEEGMKVFEEQLLDADWSINAGMWLWLSCSSFFQQFFHT 427
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y P SFG+K DP G+YIR +LPVLK P +YIYEPWTAP+ IQ +C+IG DYP P+V+
Sbjct: 428 YCPASFGRKADPTGDYIRKYLPVLKAFPTKYIYEPWTAPMEIQVAVRCVIGVDYPLPIVN 487
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEE 402
H S+ ++ + Y +G +S+ + R E E
Sbjct: 488 HAEISQINMERMKQIYHQISLKSGPLSKYVRRRQRHMMEMTE 529
>gi|449018268|dbj|BAM81670.1| 6-4 photolyase [Cyanidioschyzon merolae strain 10D]
Length = 519
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/384 (51%), Positives = 269/384 (70%), Gaps = 20/384 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKP-PLTYQSFLKLA----GQPLWA-SS 55
+V+ + GIEV + +HTL++P DI ++ G +P PLTY+SF GQP+ A +
Sbjct: 119 QVRRLCAELGIEVRTRATHTLYDPEDIRRELGDRPTPLTYKSFYAFVTERLGQPMSALDA 178
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISD 114
P P S P V + VP++ EL Y+G E +PFRGGE+EAL+++ + +
Sbjct: 179 PAPASGFQTPDVD----LDTYTVPSLSELEAYQGLEVE--TPFRGGETEALRRMENFLRE 232
Query: 115 K-EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
+ + V +F KP P+A+ +TT LSPY KFGCLS R F + + ++++ PPVS
Sbjct: 233 RADEVRSFAKPATSPTAWPVASTTQLSPYFKFGCLSPRLFVERV----RSLRPLQQPPVS 288
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW--SNDDELLAAWREARTGYPWIDAI 231
L+GQ+ WR+FF VA+ TP+F +M+GN IC+QIPW + DD AW EARTGYPWIDA
Sbjct: 289 LIGQIWWREFFTYVAYVTPHFHQMQGNPICRQIPWREAADDARYRAWEEARTGYPWIDAC 348
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
MVQLR+ GW+HHLARH VACFLTRGD++V WE+GR+ FDRLL+D+D+++NN NWLWLS S
Sbjct: 349 MVQLRQEGWLHHLARHAVACFLTRGDLWVSWERGRETFDRLLVDADYSLNNANWLWLSSS 408
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+FF+QY R+YSP+SF +KYDPNG Y+RHFLPVLK+MP +YIY PW AP+ +Q +AKCIIG
Sbjct: 409 AFFHQYYRVYSPISFPQKYDPNGEYVRHFLPVLKEMPSKYIYTPWLAPVVVQKKAKCIIG 468
Query: 352 RDYPAPVVSHDSASKECKRKLGEA 375
DYP P+V H +E R++ EA
Sbjct: 469 EDYPHPIVDHAVVMRENMRRMREA 492
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti]
Length = 820
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/380 (51%), Positives = 256/380 (67%), Gaps = 11/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP-VSL 61
+ + GIEV S VSHTL+ II+KNGG+ PLTY F + P P ++L
Sbjct: 154 ISEMCKELGIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITL 213
Query: 62 SSLPPVGDVGYFEISE---VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
++ Y + + VPT+EELG++ G L P + GGE+EAL +L + K
Sbjct: 214 DTIANATTPQYEDHDDKYGVPTLEELGFETEG---LKPPIWVGGETEALARLERHLERKA 270
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVA+F +PK P + L + T LSPYL+FGCLS+R FY LTD+Y+ +KK PP+SL G
Sbjct: 271 WVASFGRPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-ACPPLSLHG 328
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFY A PNFD+M GN IC QIPW + E LA W +TG+PWIDAIM QLR
Sbjct: 329 QLLWREFFYCAATKNPNFDKMAGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLR 388
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSFF Q
Sbjct: 389 EEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFFQQ 448
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW AP T+Q AKCIIG++YP
Sbjct: 449 FFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPETVQRTAKCIIGKEYPL 508
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 509 PMVNHAIASRANMERIKQVY 528
>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome-1 [Equus caballus]
Length = 587
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 264/383 (68%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPAGLSPYLRFGCLSCRLFYFRLTDLYRKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|226494726|ref|NP_001146620.1| uncharacterized protein LOC100280217 [Zea mays]
gi|219888051|gb|ACL54400.1| unknown [Zea mays]
Length = 421
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 180/262 (68%), Positives = 219/262 (83%), Gaps = 3/262 (1%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV D+A +GIEV +PVSHTLF+P +II+KNGG+PPLTYQSF+ +AG+P +P
Sbjct: 133 KVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIAGEP---PAPAMEEY 189
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPP+GD G +E+ VPTVEELGY QEE+ PF GGE+EAL++++ES+ +KEWVA F
Sbjct: 190 SELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKESLQNKEWVAKF 249
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA++KP+TTVLSPYLKFGCLSSRYFY C+ DV+++V+ HT PPVSL GQLLWR
Sbjct: 250 EKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKPPVSLTGQLLWR 309
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTV++GTPNFDRMKGN+ICKQIPWS +++L AWR+ +TGYPWIDAIM+QLR WGWM
Sbjct: 310 DFFYTVSYGTPNFDRMKGNKICKQIPWSENEDLFVAWRDGQTGYPWIDAIMIQLRNWGWM 369
Query: 242 HHLARHCVACFLTRGDMFVHWE 263
HHLARH VACFLTRGDM E
Sbjct: 370 HHLARHSVACFLTRGDMCCRCE 391
>gi|413936068|gb|AFW70619.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 397
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 3/257 (1%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV D+A +GIEV +PVSHTLF+P +II+KNGG+PPLTYQSF+ +AG+P +P
Sbjct: 133 KVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIAGEP---PAPAMEEY 189
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPP+GD G +E+ VPTVEELGY QEE+ PF GGE+EAL++++ES+ +KEWVA F
Sbjct: 190 SELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKESLQNKEWVAKF 249
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA++KP+TTVLSPYLKFGCLSSRYFY C+ DV+++V+ HT PPVSL GQLLWR
Sbjct: 250 EKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKPPVSLTGQLLWR 309
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTV++GTPNFDRMKGN+ICKQIPWS +++L AWR+ +TGYPWIDAIM+QLR WGWM
Sbjct: 310 DFFYTVSYGTPNFDRMKGNKICKQIPWSENEDLFVAWRDGQTGYPWIDAIMIQLRNWGWM 369
Query: 242 HHLARHCVACFLTRGDM 258
HHLARH VACFLTRGDM
Sbjct: 370 HHLARHSVACFLTRGDM 386
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/387 (50%), Positives = 264/387 (68%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A G+ V + SHT++NP +I KN GK P+TYQ FL + Q P P +
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP +V + + + PT+++L + EEL P F GGE+EAL+++ ES+ D+
Sbjct: 182 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKR---PEELGPNKFPGGETEALRRMEESLKDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 239 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 298 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 478 HRIVKHEVVHKENIKRMGAAYKVNREV 504
>gi|432852920|ref|XP_004067451.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 521
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 264/382 (69%), Gaps = 14/382 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLPV 59
V A I+V +SHTL++ II++N GKPPLTY + +K G P P+P
Sbjct: 113 VTMLAEEQRIQVIYKISHTLYDIDRIIEENNGKPPLTYNRLRDIVKALGSP---KKPIPA 169
Query: 60 ----SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
+ ++ P + E +P++EELG E F GGE EAL++L +
Sbjct: 170 PTVEDMKNIAPFSEKHKPEYG-IPSLEELGLDTSSLAE-EIFPGGEQEALRRLDTYMQRP 227
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WV +FEKP P++ L P+TTVLSPY+ FGCLS+R F+ L +VYQ KKH+ PPVSL
Sbjct: 228 GWVCSFEKPNTSPNS-LSPSTTVLSPYVTFGCLSARTFWWRLAEVYQG-KKHSDPPVSLH 285
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYT + G PNF++M GN C Q+ W + E LAAWREARTG+P+IDAIM QL
Sbjct: 286 GQLLWREFFYTASVGIPNFNKMTGNPACTQVDWDENQEYLAAWREARTGFPFIDAIMTQL 345
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW WLS S+FF+
Sbjct: 346 RQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEKLLLDGDWALNAGNWQWLSASTFFH 405
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Q+ R+YSPV+FGKK D NG+YI+ +LP+LK P +YIYEPW AP ++Q A CI+G+DYP
Sbjct: 406 QFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPPQYIYEPWKAPRSVQQAAGCIVGKDYP 465
Query: 356 APVVSHDSASKECKRKLGEAYA 377
P++ H+ SK+ +++ +AYA
Sbjct: 466 KPIIEHEVISKKNIQRMKQAYA 487
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/387 (50%), Positives = 264/387 (68%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A G+ V + SHT++NP +I KN GK P+TYQ FL + Q P P +
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP +V + + + PT+++L + EEL P F GGE+EAL+++ ES+ D+
Sbjct: 182 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKR---PEELGPNKFPGGETEALRRMEESLKDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 239 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 298 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 478 HRIVKHEVVHKENIKRMGAAYKVNREV 504
>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
Length = 540
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/387 (50%), Positives = 263/387 (67%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A G+ V + SHT++NP + KN GK P+TYQ FL + Q P P +
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 181
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP +V + + + PT+++L + EEL P F GGE+EAL+++ ES+ D+
Sbjct: 182 KKMPTPPKDEVEQKDSAAYDCPTIKQLVKR---PEELGPNKFPGGETEALRRMEESLKDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 239 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 298 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPATCIYEPWKASLVDQRAYGCVLGTDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 478 HRIVKHEVVHKENIKRMGAAYKVNREV 504
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/387 (50%), Positives = 264/387 (68%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A G+ V + SHT++NP +I KN GK P+TYQ FL + Q P P +
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP +V + + + PT+++L + EEL P F GGE+EAL+++ ES+ D+
Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKR---PEELGPNKFPGGETEALRRMEESLKDE 261
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 262 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 320
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 321 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 380
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 381 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 440
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 441 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYP 500
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 501 HRIVKHEVVHKENIKRMGAAYKVNREV 527
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris]
Length = 574
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/398 (51%), Positives = 264/398 (66%), Gaps = 22/398 (5%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V VSHTL+ +II++NGGKPPLTY F + P
Sbjct: 125 RVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVAS---MDPP 181
Query: 57 LP-VSLSSLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSP-FRGGESEALKK 107
P VS + +G Y + E VPT+EELG+ G L P + GGESEAL +
Sbjct: 182 EPSVSTVTSACIGS-AYTPLKEDHDDHYGVPTLEELGFDTEGL--LPPVWVGGESEALAR 238
Query: 108 LRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH 167
L + K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK
Sbjct: 239 LERHLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKA 297
Query: 168 TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
PP+SL GQLLWR+FFY A PNFDRM+GN IC QIPW + E LA W +TG+PW
Sbjct: 298 V-PPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPW 356
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+W
Sbjct: 357 IDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW 416
Query: 288 LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
LSCSSFF Q+ Y PV FG+K DPNG+YIR +LP+LK+ P YI+EPW APL++Q AK
Sbjct: 417 LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPILKNFPTRYIHEPWNAPLSVQRAAK 476
Query: 348 CIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
CIIG+DY P+V+H +S+ ++ + Y K G
Sbjct: 477 CIIGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGN 514
>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
Length = 523
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/380 (51%), Positives = 261/380 (68%), Gaps = 7/380 (1%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-- 59
+V A G+E+ VSHTL+N II++N GK PLTY L P+P
Sbjct: 112 EVGRLAEEHGVEIIYKVSHTLYNIDRIIEENNGKAPLTYNRLQTLVSSIGPPKRPIPAPT 171
Query: 60 --SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ + + E + T+E+L Y+ F GGE EAL++L + ++ KEW
Sbjct: 172 CDDMKDVKTPCSEKHEENYGISTLEKL-YQDPESLTEELFPGGEQEALRRLDQHMARKEW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V FEKP+ P++ L P+TTVLSPY+ FGCLS+R F+ LTDVYQ KKH+ PPVSL GQ
Sbjct: 231 VCGFEKPQTSPNS-LSPSTTVLSPYMTFGCLSARTFWWSLTDVYQG-KKHSQPPVSLHGQ 288
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT G PNFD+M+GN +C Q+ W ++ E LAAW EARTG+P+IDAIM QLR+
Sbjct: 289 LLWREFFYTAGLGIPNFDKMEGNPVCTQVDWDSNFEYLAAWAEARTGFPFIDAIMTQLRQ 348
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D DW++N GNW WLS S+FF+Q+
Sbjct: 349 EGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWSLNAGNWQWLSASTFFHQF 408
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
R+YSP++FGKK D NG+YI+ +LP LK P +YIYEPW AP ++Q A CI+G+DYP P
Sbjct: 409 FRVYSPIAFGKKTDKNGDYIKKYLPHLKKYPAQYIYEPWKAPRSVQEAAGCIVGKDYPRP 468
Query: 358 VVSHDSASKECKRKLGEAYA 377
+V H+ SK+ +++ AYA
Sbjct: 469 IVEHEVISKKNIQRMKAAYA 488
>gi|444245671|gb|AGD94517.1| cryptochrome, partial [Solenopsis invicta]
Length = 573
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/394 (51%), Positives = 266/394 (67%), Gaps = 21/394 (5%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V +SHTL+ +II++N GKPPLTY F + SP
Sbjct: 127 RVRDHNISALCEELGISVVQRISHTLYKLDEIIERNSGKPPLTYHQFQNVVAGMGPPESP 186
Query: 57 LPVSL-----SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLR 109
+P S+ P+ D + + VPT+EELG+ E L P + GGESEAL +L
Sbjct: 187 VPTVTAACIGSAYTPLKD-DHDDHYGVPTLEELGFD---TESLLPPVWVGGESEALARLE 242
Query: 110 ESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS 169
+ K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK
Sbjct: 243 RHLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-AV 300
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229
PP+SL GQLLWR+FFY A PNFDRM+GN IC QIPW + E LA W +TG+PWID
Sbjct: 301 PPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWID 360
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
AIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLS
Sbjct: 361 AIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLS 420
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
CSSFF Q+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW APL++Q AKCI
Sbjct: 421 CSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQHAAKCI 480
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAYALNQKLN 383
IG++Y P+V+H +S+ ++ + Y Q+LN
Sbjct: 481 IGKEYSLPMVNHSKSSRINIERMKQVY---QQLN 511
>gi|432959668|ref|XP_004086356.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 653
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 261/380 (68%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K A AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ S
Sbjct: 113 IKKLAMEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRLDPPEMPVETLSD 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ P D G E VP++EELG+ G + + GGE+EAL ++ + K
Sbjct: 173 TLMGCCVTPVSEDHG--EKYGVPSLEELGFDTEGLPS-AVWPGGETEALTRIERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC +IPW + E LA W EARTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVRIPWDKNPEALAKWAEARTGFPWIDAIMSQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG++IR +LP+L+ P ++IY+PW AP ++Q AKCIIG YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKFIYDPWNAPESVQAAAKCIIGVHYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V H AS+ ++ + Y
Sbjct: 469 PMVHHAEASRLNIERMKQIY 488
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
Length = 558
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/395 (51%), Positives = 263/395 (66%), Gaps = 23/395 (5%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V VSHTL+ +II+KNGGKPPLTY F + P
Sbjct: 158 RVRDHNISALCKELGISVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVAS---MEPP 214
Query: 57 LPVSLSSLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSP-FRGGESEALKKL 108
P L+ Y + + VPT+EELG+ G L P + GGESEAL +L
Sbjct: 215 EPPVLTVTSACIGSAYTPLKDDHDDHYGVPTLEELGFDTEGL--LPPVWVGGESEALARL 272
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+ K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK
Sbjct: 273 ERHLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-A 330
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
PP+SL GQLLWR+FFY A PNFDRM+GN IC QIPW + E LA W +TG+PWI
Sbjct: 331 MPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWI 390
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WL
Sbjct: 391 DAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWL 450
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
SCSSFF Q+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW APL+IQ AKC
Sbjct: 451 SCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKC 510
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLN 383
I+G++Y P+V+H +S+ ++ + Y Q+LN
Sbjct: 511 IVGKEYSLPMVNHSKSSRINIERMKQVY---QQLN 542
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens]
gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
Length = 574
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/397 (50%), Positives = 263/397 (66%), Gaps = 20/397 (5%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V VSHTL+ +II++NGGKPPLTY F +
Sbjct: 125 RVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPS 184
Query: 57 LPVSLSSLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSP-FRGGESEALKKL 108
+P S+ +G Y + E VPT+EELG+ G L P + GGESEAL +L
Sbjct: 185 VPTVTSAC--IGS-AYTPLKEDHDDHYGVPTLEELGFDTEGL--LPPVWVGGESEALARL 239
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+ K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK
Sbjct: 240 ERHLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV 298
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
PP+SL GQLLWR+FFY A PNFDRM+GN IC QIPW + E LA W +TG+PWI
Sbjct: 299 -PPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWI 357
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WL
Sbjct: 358 DAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWL 417
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
SCSSFF Q+ Y PV FG+K DPNG+YIR +LP+LK+ P YI+EPW APL++Q AKC
Sbjct: 418 SCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPILKNFPTRYIHEPWNAPLSVQRAAKC 477
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
IIG+DY P+V+H +S+ ++ + Y K G
Sbjct: 478 IIGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGN 514
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus]
Length = 742
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/383 (51%), Positives = 258/383 (67%), Gaps = 13/383 (3%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL-AGQPLWASSPLPVSLSSL---- 64
GI+V S VSHTL+ DII+KNGGK PLTY F L A P S+ +SL +L
Sbjct: 146 VGIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALIASMPPPPSAEPTISLETLNRAV 205
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFE 122
P+ D + E VPT+EELG+ G L P + GGE+EAL +L + K WVA+F
Sbjct: 206 TPISD-NHDERFGVPTLEELGFDTEG---LKPPIWIGGENEALLRLERHLERKAWVASFG 261
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+PK P + L + T LSPYL+FGCLS+R FY L+++Y+ +K+ PP+SL GQ+LWR+
Sbjct: 262 RPKMTPESLLS-SQTGLSPYLRFGCLSTRLFYYQLSELYKRIKQE-RPPLSLHGQILWRE 319
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFY A PNFDRM+GN IC QIPW + E L W +TG+PWIDAIM+QLR GW+H
Sbjct: 320 FFYCAATRNPNFDRMEGNPICVQIPWEKNQEALKKWANGQTGFPWIDAIMIQLRNDGWIH 379
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLSCSSFF Q+ Y
Sbjct: 380 HLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 439
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG+K DPNG++IR ++PVLK+MP YI+EPW P IQ +CIIG+DYP P+V H
Sbjct: 440 PVRFGRKTDPNGDFIRKYIPVLKNMPTRYIHEPWVCPEEIQKSIRCIIGKDYPMPIVDHT 499
Query: 363 SASKECKRKLGEAYALNQKLNGQ 385
AS+ ++ + YA K Q
Sbjct: 500 KASEINLERIKQVYAQLAKFKPQ 522
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
Length = 1043
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/383 (50%), Positives = 254/383 (66%), Gaps = 15/383 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+ + GIEV S SHTL+N II+KNGG+ PLTY F + + P P +
Sbjct: 215 NISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIAS--MDAPPQPETT 272
Query: 62 SSLPPVGDV------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESIS 113
+L +G + + VPT+EELG++ E L P + GGE+EAL +L +
Sbjct: 273 ITLEAIGGATTPLYDDHDDKYGVPTLEELGFE---TEALRPPVWIGGETEALARLERHLE 329
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVA+F +PK P + L + T LSPYL+FGCLS+R FY LTD+Y+ +KK PP+S
Sbjct: 330 RKAWVASFGRPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-ACPPLS 387
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFY A P FD+M GN IC QIPW + E LA W +TG+PWIDAIM
Sbjct: 388 LHGQLLWREFFYCAATKNPTFDKMAGNPICVQIPWDRNSEALAKWASGQTGFPWIDAIMT 447
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSF
Sbjct: 448 QLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSF 507
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG+K DPNG+YIR +LPVLK+ P +I+EPW AP +Q AKC+IG+D
Sbjct: 508 FQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNAPENVQRAAKCLIGKD 567
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 568 YPLPMVNHAIASRANMERIKQVY 590
>gi|432943720|ref|XP_004083252.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 624
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/383 (50%), Positives = 263/383 (68%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV VSHTL++ II+ NGG+ PLTY+ F L + P+ + +
Sbjct: 113 IKKLASEAGVEVTVRVSHTLYDLDQIIELNGGQSPLTYKRFQTLISR----MDPVEMPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
S+ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 SITAEVMGKCTTPLSD-DHDEKFGVPSLEELGFDTEGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+ N IC Q+PW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPCFDKMESNPICVQMPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LP+L+ P +YIY+PW AP ++Q AKCIIG
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNAPDSVQKAAKCIIGVH 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRINIERMKQIY 488
>gi|81864807|sp|Q70AD6.1|CRY1_SPAJD RecName: Full=Cryptochrome-1
gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
Length = 587
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/383 (50%), Positives = 263/383 (68%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
+ WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RRAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLT D+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST]
gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST]
Length = 1056
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/382 (50%), Positives = 255/382 (66%), Gaps = 15/382 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ + GIEV S SHTL+N II+KNGG+ PLTY F + + P P +
Sbjct: 209 ISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIAS--MDAPPQPEAAI 266
Query: 63 SLPPVGDVGYFEISE------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISD 114
+L +G+ + + VPT+EELG++ E L P + GGE+EAL +L +
Sbjct: 267 TLDVIGNANTPQYDDHDDKYGVPTLEELGFE---TEALRPPVWIGGETEALARLERHLER 323
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
K WVA+F +PK P + L + T LSPYL+FGCLS+R FY LTD+Y+ +KK PP+SL
Sbjct: 324 KAWVASFGRPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-ACPPLSL 381
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQLLWR+FFY A P FD+M GN IC QIPW + E LA W +TG+PWIDAIM Q
Sbjct: 382 HGQLLWREFFYCAATKNPTFDKMAGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQ 441
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSFF
Sbjct: 442 LREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF 501
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Q+ Y PV FG+K DPNG+YIR +LPVLK+ P +I+EPW A ++Q AKC+IG+DY
Sbjct: 502 QQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDY 561
Query: 355 PAPVVSHDSASKECKRKLGEAY 376
P P+V+H AS+ ++ + Y
Sbjct: 562 PLPMVNHAIASRANMERIKQVY 583
>gi|348517126|ref|XP_003446086.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 800
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/379 (50%), Positives = 263/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +
Sbjct: 113 IKKLAMEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRLDPPEMPVEMLTD 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+L PV + + + VP++EELG+ G + + GGE+EAL ++ + K W
Sbjct: 173 TLMGRCVTPVSE-DHGDKYGVPSLEELGFDTEGLPS-AVWPGGETEALTRIERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC +IPW + E LA W EA+TG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG++IR +LPVL+ P ++IY+PW AP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDFIRRYLPVLRGFPAKFIYDPWNAPESVQAAAKCIIGVHYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V H AS+ ++ + Y
Sbjct: 470 MVHHAEASRLNIERMKQIY 488
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/412 (48%), Positives = 264/412 (64%), Gaps = 10/412 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ + G EV S VSH+L+N I+ NGG PPLTY+ FL L G P L
Sbjct: 114 IQRLGAELGFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPELPVRNLTA 173
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
+ G E VP +L E LSP+RGGE+E L++L + + D+ WV
Sbjct: 174 EDFQRCRAPEPGLAECYRVPLPVDLKI---SPESLSPWRGGETEGLRRLEQHLIDQGWVT 230
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
+F KP+ P++ L P+TT LSPY GCLS R F+ L+++Y K H+ PPVSL GQLL
Sbjct: 231 SFAKPRTSPNSLL-PSTTGLSPYFSMGCLSVRTFFYRLSNIYAQAKHHSLPPVSLQGQLL 289
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+FFYTVA TPNF +M GN IC QI W D E L W+ A+TG+PWIDAIM QLR+ G
Sbjct: 290 WREFFYTVASATPNFTQMAGNPICLQISWYKDAERLHKWKTAKTGFPWIDAIMTQLRQEG 349
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+D++IN GNW+WLS S+FF+QY R
Sbjct: 350 WIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHQYTR 409
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
I+ PV FGK+ DP GNYIR +LP+LK+ P +YIYEPWTA Q A CIIG+DYP P+V
Sbjct: 410 IFCPVRFGKRTDPQGNYIRKYLPILKNFPSKYIYEPWTASEEEQKLAGCIIGQDYPFPMV 469
Query: 360 SHDSASK---ECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGR 408
+H AS + +++ E +L ++D ++ ++ EEN G+
Sbjct: 470 NHKEASDHNLQLMKQVREEQHRTVQLTRDDADDPMEIRVKRDHSEENISKGK 521
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/387 (50%), Positives = 264/387 (68%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A G+ V + SHT++NP +I KN GK P+TYQ FL + Q P P +
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP +V + + + PT+++L + EEL P F GGE+EAL+++ ES+ D+
Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKR---PEELGPNKFPGGETEALRRMEESLKDE 261
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 262 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 320
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 321 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 380
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+H+LARH VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 381 RQEGWIHNLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 440
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 441 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYP 500
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 501 HRIVKHEVVHKENIKRMGAAYKVNREV 527
>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
Length = 655
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/380 (50%), Positives = 260/380 (68%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K A AG+EV SHTL+N II+ NGG+PPLTY+ F L + P+ S
Sbjct: 113 IKKLAMEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSN 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ P D G + VP++EELG+ G + + GGE+EAL ++ + K
Sbjct: 173 SIMGCCVTPVAEDHG--DKYGVPSLEELGFDIEGLPS-AVWPGGETEALTRIERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK ++PP+SL G
Sbjct: 230 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC +IPW + E LA W EA+TG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATTNPRFDKMEGNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG++IR +LP+L+ P +YIY+PW AP ++Q AKCIIG YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
Length = 961
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/382 (50%), Positives = 255/382 (66%), Gaps = 15/382 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ + GIEV S SHTL+N II+KNGG+ PLTY F + + P P +
Sbjct: 114 ISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIAS--MDAPPQPEAAI 171
Query: 63 SLPPVGDVGYFEISE------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISD 114
+L +G+ + + VPT+EELG++ E L P + GGE+EAL +L +
Sbjct: 172 TLDVIGNANTPQYDDHDDKYGVPTLEELGFE---TEALRPPVWIGGETEALARLERHLER 228
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
K WVA+F +PK P + L + T LSPYL+FGCLS+R FY LTD+Y+ +KK PP+SL
Sbjct: 229 KAWVASFGRPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-ACPPLSL 286
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQLLWR+FFY A P FD+M GN IC QIPW + E LA W +TG+PWIDAIM Q
Sbjct: 287 HGQLLWREFFYCAATKNPTFDKMAGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQ 346
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSFF
Sbjct: 347 LREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF 406
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Q+ Y PV FG+K DPNG+YIR +LPVLK+ P +I+EPW A ++Q AKC+IG+DY
Sbjct: 407 QQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDY 466
Query: 355 PAPVVSHDSASKECKRKLGEAY 376
P P+V+H AS+ ++ + Y
Sbjct: 467 PLPMVNHAIASRANMERIKQVY 488
>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
Length = 671
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/394 (51%), Positives = 265/394 (67%), Gaps = 21/394 (5%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V VSHTL+ +II++N GKPPLTY F + P
Sbjct: 127 RVRDHNISALCKELGISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGMDPPEPP 186
Query: 57 LPVSL-----SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLR 109
P S+ P+ D + + VPT+EELG+ E L P + GGESEAL +L
Sbjct: 187 APTVTAACIGSAYTPLKD-DHDDHYGVPTLEELGFD---TESLLPPVWVGGESEALARLE 242
Query: 110 ESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS 169
+ K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK
Sbjct: 243 RHLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV- 300
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229
PP+SL GQLLWR+FFY A PNFD+M+GN IC QIPW + E LA W +TG+PWID
Sbjct: 301 PPLSLHGQLLWREFFYCAATKNPNFDKMQGNPICVQIPWDKNVEALAKWANGQTGFPWID 360
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
AIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLS
Sbjct: 361 AIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLS 420
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
CSSFF Q+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW APL+IQ AKCI
Sbjct: 421 CSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCI 480
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAYALNQKLN 383
IG++Y P+V+H+ +S+ ++ + Y Q+LN
Sbjct: 481 IGKEYSLPMVNHNKSSRINIERMKQVY---QQLN 511
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/387 (50%), Positives = 263/387 (67%), Gaps = 11/387 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ A G+ V + SHT++NP +I KN GK P+TYQ FL + Q P P +
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKL 204
Query: 60 SLSSLPPVGDVGYFEIS--EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
PP +V + + + PT+++L + EEL P F GGE+EAL+++ ES+ D+
Sbjct: 205 KNMPTPPKDEVEQKDSAAYDCPTMKQLVKR---PEELGPNKFPGGETEALRRMEESLKDE 261
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F Q L ++ + KH+ PPVSL+
Sbjct: 262 IWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLI 320
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 321 GQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 380
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLAR VACFLTRGD+++ WE+G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 381 RQEGWIHHLARMAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 440
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 441 QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYP 500
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ KE +++G AY +N+++
Sbjct: 501 HRIVKHEVVHKENIKRMGAAYKVNREV 527
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
Length = 541
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/415 (48%), Positives = 276/415 (66%), Gaps = 16/415 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-PLWASSPLPVSL 61
V+ AS G++V + SHT++NP +I KN GK P+TYQ FL + + L +P L
Sbjct: 122 VQKIASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIVDKLKLPKVLAVPEGL 181
Query: 62 -SSLPPVGDVGYFE-----ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
+ P+ D FE + + PT+++L K + ++ F GGE+EAL+++ S+ D+
Sbjct: 182 PDGIKPIAD--EFEAVDSCVYDCPTLDQL-VKRPQELGVNKFPGGETEALRRMEASLIDE 238
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R ++ L ++ KH+ PPVSLV
Sbjct: 239 NWVAAFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLLHERLKEILVRKPKHSKPPVSLV 297
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+IDAIM QL
Sbjct: 298 GQLLWREFYYTVAAADPNFDRMLGNAYCLQIPWQKQPDHLEAWTHGRTGYPFIDAIMRQL 357
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE G+ VF++LL+D DWA+N GNW+WLS S+FF+
Sbjct: 358 RQEGWIHHLARHAVACFLTRGDLWISWEDGQRVFEQLLLDQDWALNAGNWMWLSASAFFH 417
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G YIR ++P L P IYEPW A L+ Q C++G DYP
Sbjct: 418 QYFRVYSPVAFGKKTDPTGAYIRKYVPELAKYPAGCIYEPWKATLSAQREYGCVLGVDYP 477
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQ 410
+V+HD KE +++ AY +N+++ ED + +E +Q +G+R+
Sbjct: 478 HRIVNHDIVHKENIKRMSAAYKVNREVRTGKQED-----QNDYEPSPSQSTGKRK 527
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 268/418 (64%), Gaps = 9/418 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK---LAGQP-LWASSPLP 58
++ G +V S + H+L+N I++ NGG PPLTY+ FL+ L G P + +P
Sbjct: 114 IRGLGEELGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLGDPEVPVRNPTA 173
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
P ++G E VP +L E +SP+RGGESE L++L + ++D+ WV
Sbjct: 174 EDFQRCSP-PELGLAECYGVPLPTDLKIP---PESISPWRGGESEGLQRLEQHLADQGWV 229
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
A+F KPK P++ L P+TT LSPY GCLS R F+ L+++Y K H+ PPVSL GQL
Sbjct: 230 ASFTKPKTVPNSLL-PSTTGLSPYFSTGCLSVRSFFYRLSNIYAQAKHHSLPPVSLQGQL 288
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYTVA TPNF +M GN IC QI W D E L W+ A+TG+PWIDAIM QLR+
Sbjct: 289 LWREFFYTVASATPNFTKMAGNPICLQIRWYEDAERLHKWKTAQTGFPWIDAIMTQLRQE 348
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH ACFLTRGD+++ WE+G VF+ LL+D+D++IN GNW+WLS S+FF+ Y
Sbjct: 349 GWIHHLARHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHHYT 408
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI+ PV FG++ DP G YIR +LP+LK+ P +YIYEPWTA Q +A CIIGRDYP P+
Sbjct: 409 RIFCPVRFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPM 468
Query: 359 VSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLT 416
V H AS + + +A ++ +D + K + + ++ES + K +T
Sbjct: 469 VDHKEASDHNLQLMKQAREEQHRIAQLTRDDADDPMEMKLKRDHSEESFTKTKAARMT 526
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/394 (49%), Positives = 267/394 (67%), Gaps = 7/394 (1%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSP--L 57
V+D A+ G++V + SHT++NP +I KN G+ P+TYQ FL + + P P L
Sbjct: 122 VQDIAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKVLDKPQRL 181
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + + ++G ++ E PT+++L K + ++ F GGE EAL++L S+SD+ W
Sbjct: 182 PNGVQPIADELEMGQSDVYECPTLDQL-VKRPQELGINKFPGGEREALRRLDTSLSDEHW 240
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VA+FEKP P++ L+P+TTVLSPYLKFGCLS+R +Q L ++ + KH+ PPVSLVGQ
Sbjct: 241 VASFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLVHQRLHEILKRHPKHSKPPVSLVGQ 299
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+F+YT A PNFDRM GN C QIPW + L AW RTGYP+IDAIM QLR+
Sbjct: 300 LLWREFYYTAAAVEPNFDRMLGNVYCLQIPWQERPDHLDAWAHGRTGYPFIDAIMRQLRQ 359
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D DWA+N GNW+WLS S+FF+QY
Sbjct: 360 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDHDWALNAGNWMWLSASAFFHQY 419
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
R+YSPV+FGKK D G YIR ++P L P IYEPW A L Q C++G DYP
Sbjct: 420 FRVYSPVAFGKKTDRTGAYIRKYVPELAKYPAGCIYEPWKATLADQREFGCVLGIDYPHR 479
Query: 358 VVSHDSASKECKRKLGEAYALNQKLNGQVSEDGL 391
+V+HD KE +++ AY +N+++ ED +
Sbjct: 480 IVNHDIVHKENIKRMSAAYKINREVRTGKQEDEI 513
>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
Length = 658
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/379 (50%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A AG+EV SHTL+N II+ NGG+PPLTY+ F L + P+ +
Sbjct: 113 IKKLAMEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSN 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
S+ PV + + + VP++EELG+ G + + GGE+EAL ++ + K W
Sbjct: 173 SIMGCCVTPVSE-DHGDKYGVPSLEELGFDIEGLPS-AVWPGGETEALTRIERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK ++PP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKTSTPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC +IPW + E LA W EA+TG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATTNPRFDKMEGNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG++IR +LP+L+ P +YIY+PW AP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>gi|348519202|ref|XP_003447120.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 570
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/379 (50%), Positives = 260/379 (68%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP-----L 57
++ A+ AG+EV +SHTL+N II+ NG +PPLTY+ F + + P
Sbjct: 113 IQKLANEAGVEVMVRISHTLYNLDKIIELNGNQPPLTYKRFQAVINRMDAVEMPAETITF 172
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
V + + P+ + + E VP++EELG++ G + + GGE+EAL +L + K W
Sbjct: 173 EVLKNCVTPISE-DHDEKFGVPSLEELGFETEGLTT-AVWPGGETEALMRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK+ +PP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNHTPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTTATNNPCFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHGVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LP+L+ P +YIY+PW AP +Q AKCIIG YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNAPEEVQKAAKCIIGVHYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRINIERMKQIY 488
>gi|432090377|gb|ELK23803.1| Cryptochrome-2 [Myotis davidii]
Length = 539
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/388 (50%), Positives = 260/388 (67%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+
Sbjct: 78 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVASVTR 137
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ S P + E VPT+EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 138 HQMESCPAEIQENHDETYGVPTLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKA 194
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK+++SPP+SL G
Sbjct: 195 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSSPPLSLFG 253
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDRM+GN IC QIPW ++ E LA W E +TG+PWIDAIM QLR
Sbjct: 254 QLLWREFFYTAATNNPRFDRMEGNPICIQIPWDHNPEALAKWAEGKTGFPWIDAIMTQLR 313
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 314 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 373
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP
Sbjct: 374 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPR 433
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 434 PIVNHAETSRLNIERMKQIYQQLSRYRG 461
>gi|348529122|ref|XP_003452063.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 630
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/383 (50%), Positives = 258/383 (67%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV SHTL+ II+ NGG+ PLTY+ F L + P+ V
Sbjct: 113 IKKLASEAGVEVTVRTSHTLYELDKIIELNGGQSPLTYKRFQTLISR----MDPVEVPAE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
S+ P+ + + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 SITAEIMGKCTTPLSE-DHDEKFGVPSLEELGFDTEGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+ N IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPCFDKMESNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +Q AKCIIG
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEVVQKAAKCIIGVH 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V H AS+ ++ + Y
Sbjct: 466 YPKPMVHHAEASRLNIERMKQIY 488
>gi|302745154|gb|ADL62680.1| criptochrome 1b, partial [Phreatichthys andruzzii]
Length = 564
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/379 (50%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EVF +SHTL++ II+ NGG+ PLTY+ F L + P +
Sbjct: 70 IKKLATEAGVEVFVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISKMDPVEIPAETITA 129
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ PV D + + VP++EELG++ G + + GGE+EAL +L + K W
Sbjct: 130 EVMGKCATPVSD-DHDDKFGVPSLEELGFETDGLSS-AVWPGGETEALTRLERHLERKAW 187
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++ PP+SL GQ
Sbjct: 188 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSLPPLSLYGQ 246
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P+FD+M+ N IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 247 LLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQ 306
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 307 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 366
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LP+L+ P ++IY+PW AP ++Q AKCIIG YP P
Sbjct: 367 FHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKP 426
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 427 MVNHAEASRINIERMKQIY 445
>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
Length = 570
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/405 (51%), Positives = 265/405 (65%), Gaps = 25/405 (6%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V VSHTL+ +II++NG KPPLTY F Q + AS
Sbjct: 125 RVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQF-----QTVVASMD 179
Query: 57 LPVSLSSLPPVGDVG--YFEISE-------VPTVEELGYKGYGQEELSP-FRGGESEALK 106
P VG Y + E VPT+EELG+ G L P + GGESEAL
Sbjct: 180 PPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGL--LPPVWVGGESEALA 237
Query: 107 KLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK 166
+L + K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK
Sbjct: 238 RLERHLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK 296
Query: 167 HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
PP+SL GQLLWR+FFY A PNFDRM+GN IC QIPW + E LA W +TG+P
Sbjct: 297 -AVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFP 355
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
WIDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+
Sbjct: 356 WIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWM 415
Query: 287 WLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
WLSCSSFF Q+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW APL +Q A
Sbjct: 416 WLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAA 475
Query: 347 KCIIGRDYPAPVVSHDSASKECKRKLGEAY-ALNQKLNGQVSEDG 390
KCIIG+DY P+V+H +S+ ++ + Y LN+ VS G
Sbjct: 476 KCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGNGVSLKG 520
>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
Length = 545
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/383 (51%), Positives = 260/383 (67%), Gaps = 17/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A GI+V SHTL+ II KNGGK PLTY++F + PLP S
Sbjct: 117 ITHIAREMGIQVIIKTSHTLYKLEKIISKNGGKLPLTYKTFQNVLST--MEPPPLPASPV 174
Query: 63 SLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESIS 113
++ VGD + I E VPT+EELG++ E L+P ++GGESEAL +L +
Sbjct: 175 TVRDVGD-AFTPIDEDHDEKYGVPTLEELGFE---TENLAPSIWKGGESEALARLEHHLE 230
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVA+F +PK P + L P+ T LSPYL+FGCLS+R F+ L D+Y+ +KK + P+S
Sbjct: 231 RKAWVASFGRPKMTPQS-LYPSRTGLSPYLRFGCLSARRFFAELNDLYRKIKK-SPAPLS 288
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+F+YT A P FD M+GN IC QIPW + E LA W RTG+PWIDAIM
Sbjct: 289 LHGQLLWREFYYTAATNNPKFDHMEGNPICVQIPWDKNAEALAKWAHGRTGFPWIDAIMS 348
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLRK GW+H++ARH VACFLTRGD++V WE+G VFD LL+D+DW++N G+W+WLSCSSF
Sbjct: 349 QLRKEGWIHNVARHAVACFLTRGDLWVSWEEGMKVFDELLLDADWSVNAGSWMWLSCSSF 408
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV +G+K DPNG+YIR +LPVLK+ P +YI+EPWTAP +Q ++KC+IGRD
Sbjct: 409 FQQFFHCYCPVRYGRKADPNGDYIRTYLPVLKNFPTKYIHEPWTAPENVQKQSKCVIGRD 468
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V H S+ ++ + Y
Sbjct: 469 YPMPMVDHVKQSQANLMRMKQVY 491
>gi|399220399|gb|AFP33463.1| cryptochrome 2 [Dicentrarchus labrax]
Length = 668
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/380 (50%), Positives = 259/380 (68%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K A AG+EV SHTL++ II+ NG +PPLTY+ F L + P+ S
Sbjct: 113 IKKLAMEAGVEVIVKTSHTLYDLDKIIELNGAQPPLTYKRFQTLISRLDPPEMPVETLSD 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ P D G + VP++EELG+ G + + GGE+EAL ++ + K
Sbjct: 173 TLMGRCVTPISEDHG--DKYGVPSLEELGFDIEGLPT-AVWPGGETEALTRIERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC +IPW + E LA W EA+TG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG++IR +LP+L+ P +YIY+PW AP ++Q AKCIIG YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPESVQAAAKCIIGVHYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V H AS+ ++ + Y
Sbjct: 469 PMVHHAEASRLNIERMKQIY 488
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
Length = 730
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/377 (50%), Positives = 253/377 (67%), Gaps = 17/377 (4%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
GI V S VSHTL+ II++NGGK PLTY F L P P ++ P + +
Sbjct: 150 VGITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIAS---MPPPPPAEVTITPQMLN 206
Query: 70 VGYFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
I++ VPT+EELG++ G L P + GGESEAL +L + K WVA+
Sbjct: 207 GATTPITDNHDDRFGVPTLEELGFETEG---LKPPIWIGGESEALARLERHLERKAWVAS 263
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
F +PK P + L + T LSPYL+FGCLS+R FY LT++Y+ VK+ PP+SL GQ+LW
Sbjct: 264 FGRPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTELYKRVKR-VRPPLSLHGQILW 321
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFY A PNFDRM+GN IC QIPW + + LA W +TGYPWIDAIM+QLR+ GW
Sbjct: 322 REFFYCAATRNPNFDRMEGNPICVQIPWEKNQDALAKWANGQTGYPWIDAIMIQLREEGW 381
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHL+RH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+W SCSSFF Q+
Sbjct: 382 IHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWFSCSSFFQQFFHC 441
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG+K DPNG++IR ++P LK+MP YI+EPW AP ++Q A+C IGRDYP P+V
Sbjct: 442 YCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVD 501
Query: 361 HDSASKECKRKLGEAYA 377
H AS+ ++ + YA
Sbjct: 502 HTKASQINIERIKQVYA 518
>gi|333755446|gb|ADN94465.2| cryptochrome 2 [Helicoverpa armigera]
Length = 657
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/375 (51%), Positives = 251/375 (66%), Gaps = 13/375 (3%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSL----- 64
GI V S VSHTL+ II++NGGK PLTY F L + +
Sbjct: 153 VGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGAT 212
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFE 122
P+ D + + VPT+EELG++ G L P + GGESEAL +L + K WVA+F
Sbjct: 213 TPLND-DHDDRFGVPTLEELGFETEG---LKPPVWIGGESEALARLERHLERKAWVASFG 268
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+PK P + L + T LSPYL+FGCLS+R FY LT++Y+ VK+ PP+SL GQ+LWR+
Sbjct: 269 RPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTELYKRVKR-VRPPLSLHGQILWRE 326
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFY A PNFDRM+GN IC QIPW + E LA W +TG+PWIDAIM+QLR+ GW+H
Sbjct: 327 FFYCAATRNPNFDRMEGNPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIH 386
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLSCSSFF Q+ Y
Sbjct: 387 HLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 446
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG+K DPNG++IR ++P LK+MP YI+EPW AP +Q A+CIIGRDYP P+V H
Sbjct: 447 PVRFGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPEAVQQSARCIIGRDYPMPMVDHS 506
Query: 363 SASKECKRKLGEAYA 377
AS+ ++ + YA
Sbjct: 507 KASQVNIERIKQVYA 521
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/422 (46%), Positives = 275/422 (65%), Gaps = 19/422 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK---LAGQPLWASSPLP 58
+++ G EV S V+HTL++ I+ N GKPPLTY++FL+ + G P + +
Sbjct: 113 RIRAMGQELGFEVVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGNPDKPARQIT 172
Query: 59 VS--LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P + E +P E+LG ++ + + GGESEAL +L + + +
Sbjct: 173 SEDFIKCITPT-KLAAEEYYRIPKPEDLGI---SKDCPTNWIGGESEALSRLEQHLEKQG 228
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANF+KP+ P++ L P+TT LSPY GCLS R F+ L+++Y K H+ PPVSL G
Sbjct: 229 WVANFKKPQTIPNSLL-PSTTGLSPYFSLGCLSVRVFFHRLSNIYAQSKNHSLPPVSLQG 287
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYTVA TPNF M GN IC QI W ++E L W+EA+TG+PWIDAIM QL
Sbjct: 288 QLLWREFFYTVASSTPNFTHMVGNPICLQIDWYKNEEQLQKWKEAKTGFPWIDAIMTQLH 347
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
GW+HHLARH VACFLTRGD+++ WE+G VF+ L+D+D+ IN GNW+WLS S+FF+
Sbjct: 348 NEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEFLLDADYCINAGNWMWLSASAFFHH 407
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y RI+ PV FGK+ DP GNYIR +LPVLK+ P +YIYEPWTAP IQ +A C+IG+DYP
Sbjct: 408 YTRIFCPVRFGKRSDPEGNYIRKYLPVLKNFPAKYIYEPWTAPEEIQKQAGCLIGKDYPL 467
Query: 357 PVVSHDSASK---ECKRKLGEAYALNQKLNGQVSEDGLK-NLRRKFE-----GEENQESG 407
P+V H +AS+ + R++ E +L +++D ++ NL+ F+ G EN +
Sbjct: 468 PMVDHKTASEHNLQLMRQVREEQQKTAQLTKDIADDPMELNLKHPFKNDKECGLENNKVK 527
Query: 408 RR 409
RR
Sbjct: 528 RR 529
>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
Length = 556
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/399 (49%), Positives = 264/399 (66%), Gaps = 15/399 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSPL 57
V++ A +EV SHT+F+P I++KNGGKPPLTYQ + LA QPL L
Sbjct: 121 VEEQARKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQRYATLASACKIPQPLPVPQKL 180
Query: 58 PVSLSSLPPVGDVGYFE---ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
P +S P D + + PT+EEL + + F GGESEAL+++ E +S
Sbjct: 181 PAKETS--PEADKEERKNPSCYDPPTMEELDIEEASMGQCK-FPGGESEALRRMNEILSR 237
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
K WV FEKP P++ L+P+TTVLSPYLKFGCLS R FY + + + +KH+ PPVSL
Sbjct: 238 KAWVCKFEKPNTSPNS-LEPSTTVLSPYLKFGCLSVRLFYSRIAETIKG-QKHSQPPVSL 295
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+GQ++WR+F+Y VA TPN+D+M GN IC QI W + + L AW RTGYP+IDAIM Q
Sbjct: 296 IGQVMWREFYYCVAAATPNYDKMVGNGICTQIDWDTNKDYLEAWTHGRTGYPFIDAIMRQ 355
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DWA+N GNW+WLS S+FF
Sbjct: 356 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFF 415
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+QY R+YSPV+FGKK DP G +I+ ++P L P IYEPW A L Q + CIIG+DY
Sbjct: 416 HQYFRVYSPVAFGKKTDPEGKFIKKYVPELARFPAGIIYEPWKANLETQKKLGCIIGKDY 475
Query: 355 PAPVVSHDSASKECKRKLGEAYALN--QKLNGQVSEDGL 391
P +V H+ SK +++ AY N QK G +D +
Sbjct: 476 PMRIVVHEDISKVNIQRMSAAYKRNKAQKDGGTEQDDSV 514
>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
Length = 535
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/380 (50%), Positives = 259/380 (68%), Gaps = 7/380 (1%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS- 60
+V+ A G++V VSHT++N +++ NGG P+TYQ F+ + G P+P
Sbjct: 126 QVEQLARKHGVKVEQKVSHTIYNTELVLRANGGSVPMTYQKFVSVVGSMPTPRRPIPAPD 185
Query: 61 -LSSLPPVGDVGYFEISEVPTVEEL-GYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
L S + D +VPT++EL KG+ EL P + GGE EAL++L E + +K
Sbjct: 186 MLPSECLLDDDLNNPEFDVPTLDELLTLKGFNPAELKPCLYPGGEKEALRRLEEYMKNKT 245
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WV FEKP P++ LKP+TTVLSPY+KFGCLS+ +FY L +V N H+ PPVSL+G
Sbjct: 246 WVCKFEKPNTSPNS-LKPSTTVLSPYMKFGCLSASHFYYRLKEVIGN-SPHSKPPVSLIG 303
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QL WR+F+YTV TPNFD+M GN IC Q+PW N+ + L AW +TGYP+IDAIM QLR
Sbjct: 304 QLYWREFYYTVGASTPNFDKMVGNSICCQVPWDNNPDALEAWTNGKTGYPFIDAIMRQLR 363
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
GW+HHLARH VACFLTRGD+++ WEKG VF+ LL+D+DW++N GNW+WLS S+FF+Q
Sbjct: 364 DEGWIHHLARHAVACFLTRGDLWISWEKGLAVFEELLLDADWSMNAGNWMWLSASAFFHQ 423
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ R+YSPV+FGKK D +G+YIR ++P L P +YIYEPW+AP +IQ RA C++G YP
Sbjct: 424 FFRVYSPVAFGKKTDKSGDYIRKYIPELAKYPDQYIYEPWSAPKSIQERAGCVVGVHYPK 483
Query: 357 PVVSHDSASKECKRKLGEAY 376
VV H+ K K+ AY
Sbjct: 484 RVVVHEDVYKNNIAKMSLAY 503
>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 625
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/385 (50%), Positives = 263/385 (68%), Gaps = 20/385 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+ PLTY+ F L + P+ V
Sbjct: 141 IKKLASEAGVEVTVCISHTLYDLDKIIELNGGQSPLTYKRFQTLISR----MDPVEVPAE 196
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRES 111
S+ P+ D + + VP++EELG+ E LS + GGE+EAL +L
Sbjct: 197 SITAEIMGKCTTPLSD-DHDDKYGVPSLEELGFD---TEVLSSAVWPGGETEALTRLERH 252
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
+ K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP
Sbjct: 253 LERKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPP 311
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
+SL GQLLWR+FFYT A P FD+M+ N IC QIPW + E LA W E RTG+PWIDAI
Sbjct: 312 LSLYGQLLWREFFYTAATNNPCFDKMENNPICVQIPWDRNPEALAKWAEGRTGFPWIDAI 371
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCS
Sbjct: 372 MTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMWLSCS 431
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
SFF Q+ Y PV FG++ DPNG+YIR +LP+L+ P +YIY+PW AP ++Q AKC+IG
Sbjct: 432 SFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNAPESVQKAAKCLIG 491
Query: 352 RDYPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 492 VHYPKPMVNHAEASRLNIERMKQIY 516
>gi|399220401|gb|AFP33464.1| cryptochrome 1 [Dicentrarchus labrax]
Length = 567
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/381 (50%), Positives = 257/381 (67%), Gaps = 12/381 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
++ A A +EV VSHTL+N II+ N G PPLTY+ F L + + LP
Sbjct: 113 IQKLACEAEVEVMVQVSHTLYNLVKIIELNDGHPPLTYKRFQALINR--MDAVELPAETI 170
Query: 63 SLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
+L + + ISE VP++EELG++ G + + GGE+EAL +L + K
Sbjct: 171 TLEVIRNCAT-PISEDHDDKFGVPSLEELGFETEGLTT-AIWPGGETEALMRLERHLERK 228
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK+ SPP+SL
Sbjct: 229 AWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFRLTDLYRKVKKNNSPPLSLY 287
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYT A FD+M+GN +C QIPW + E LA W E +TG+PWIDAIM QL
Sbjct: 288 GQLLWREFFYTTATNNSCFDKMEGNPVCVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQL 347
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LLID DW++N G+W+WLSCSSFF
Sbjct: 348 RQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLIDVDWSVNAGSWMWLSCSSFFQ 407
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Q+ Y PV FG++ DPNG+YIR +LP+L+ P +YIY+PW AP +Q AKCIIG YP
Sbjct: 408 QFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNAPEEVQKAAKCIIGVHYP 467
Query: 356 APVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 468 KPMVNHAEASRVNIERMKQIY 488
>gi|386762985|gb|AFJ22639.1| cryptochrome 2 [Agrotis ipsilon]
Length = 812
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 253/383 (66%), Gaps = 13/383 (3%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL-----SSL 64
GI V S VSHTL+ II++NGGK PLTY F L +
Sbjct: 177 VGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAKTLNGAT 236
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFE 122
PV D + + VPT+EELG++ G L P + GGESEAL +L + K WVA+F
Sbjct: 237 TPVTD-DHDDRFGVPTLEELGFETEG---LKPPVWIGGESEALARLERHLERKAWVASFG 292
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+PK P + L + T LSPYL+FGCLS+R FY LT++Y+ VK+ PP+SL GQ+LWR+
Sbjct: 293 RPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTELYKRVKR-VRPPLSLHGQILWRE 350
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFY A PNFDRM+GN IC QIPW + E LA W ++G+PWIDAIM+QLR+ GW+H
Sbjct: 351 FFYCAATRNPNFDRMEGNPICVQIPWEKNQEALAKWASGQSGFPWIDAIMIQLREEGWIH 410
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLSCSSFF Q+ Y
Sbjct: 411 HLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 470
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG+K DPNG++IR ++P LK+MP YI+EPW AP ++Q A+CIIGRDYP P+V H
Sbjct: 471 PVRFGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPESVQQAARCIIGRDYPMPMVDHA 530
Query: 363 SASKECKRKLGEAYALNQKLNGQ 385
AS+ ++ + YA K Q
Sbjct: 531 KASQVNIERIKQVYAQLAKFKPQ 553
>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
Length = 598
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/374 (48%), Positives = 252/374 (67%), Gaps = 6/374 (1%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV----SLS 62
A G+E SHTL+NP II+ N PPLT++ F + + PLP ++
Sbjct: 117 AQEYGVETVVRNSHTLYNPDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMA 176
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+ E VP++EELG++ G + L ++GGE+EAL++L + + K WVANFE
Sbjct: 177 RCRTQISDNHDEHYGVPSLEELGFRTQG-DSLHVWKGGETEALERLNKHLDRKAWVANFE 235
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+P+ + L P+ T LSPYL+FGCLS R FY L D++ +++ +SPP+SL GQLLWR+
Sbjct: 236 RPRISGQS-LFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRRSSPPLSLFGQLLWRE 294
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFYT PNFD M+GN IC QIPW ++ E LA W E RTG+PWIDAIM QLR+ GW+H
Sbjct: 295 FFYTAGTNNPNFDHMEGNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIH 354
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE G VF+ LL+D+DW++N G+W+WLSCS+FF Q+ Y
Sbjct: 355 HLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCSAFFQQFFHCYC 414
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG++ DP+G+YIR ++P LKD P YIYEPW AP ++Q A CI+G DYP P+++H
Sbjct: 415 PVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMINHA 474
Query: 363 SASKECKRKLGEAY 376
+S+ ++ + Y
Sbjct: 475 ESSRLNIERMKQVY 488
>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
Length = 556
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 279/424 (65%), Gaps = 16/424 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA---GQPLWASSPLP 58
+++ G +V S V+HTL++ I+ N GKPPLTY++FL++ G P + +
Sbjct: 113 RIRAMGQELGFDVVSKVAHTLYDVKSILALNYGKPPLTYKNFLRVLSVLGDPDKPARQIT 172
Query: 59 VS--LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP-FRGGESEALKKLRESISDK 115
+ + P + E +P E+LG + +P ++GGESEAL +L + + +
Sbjct: 173 LEDFIKCTTPT-EFAAEEYYRIPKPEDLGIC----RDCAPNWKGGESEALCRLEQHLEKQ 227
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVANF+KP+ P++ L P+TT LSPY FGCLS+R FY L+++Y K H+ PPVSL
Sbjct: 228 GWVANFQKPQTVPNSLL-PSTTGLSPYFSFGCLSARVFYHRLSNIYAQSKNHSLPPVSLQ 286
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYT A TPNF M GN IC QI W ++E L WRE +TG+PWIDAIM QL
Sbjct: 287 GQLLWREFFYTAASSTPNFTHMVGNPICLQIEWYKNEEQLQKWREGKTGFPWIDAIMAQL 346
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+D++IN GNW+WLS S+FF+
Sbjct: 347 HEEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH 406
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI+ PV FG++ DP GNYIR +LPVLK+ P +YIY PWTAP IQ ++ C+IG+DYP
Sbjct: 407 HYTRIFCPVRFGRRTDPEGNYIRKYLPVLKNFPAKYIYAPWTAPEEIQKQSGCLIGKDYP 466
Query: 356 APVVSHDSASK---ECKRKLGEAYALNQKLNGQVSEDGLK-NLRRKFEGEENQESGRRQK 411
P+V H +AS+ + R + EA +L +++D ++ NL+ F+ ++ + K
Sbjct: 467 LPMVDHTTASEHNLQLMRLVREAQQKTAQLTTDIADDPMELNLKHPFKTDKESVLENKVK 526
Query: 412 QKTL 415
++ L
Sbjct: 527 RRCL 530
>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
Length = 625
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/375 (51%), Positives = 252/375 (67%), Gaps = 13/375 (3%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSL----- 64
GI V S VSHTL+ II++NGGK PLTY F L + +
Sbjct: 154 VGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGAT 213
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFE 122
P+ D + + VPT+EELG++ G L P + GGESEAL +L + K WVA+F
Sbjct: 214 TPLTD-DHDDRFGVPTLEELGFETEG---LKPPVWIGGESEALARLERHLERKAWVASFG 269
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+PK P + L + T LSPYL+FGCLS+R FY LT++Y+ VK+ PP+SL GQ+LWR+
Sbjct: 270 RPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTELYKRVKR-VRPPLSLHGQILWRE 327
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFY A PNFDRM+GN IC QIPW + E LA W +TG+PWIDAIM+QLR+ GW+H
Sbjct: 328 FFYCAATRNPNFDRMEGNPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIH 387
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLSCSSFF Q+ Y
Sbjct: 388 HLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 447
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG+K DPNG++IR ++P LK+MP YI+EPW AP ++Q A+CIIGRDYP P+V H
Sbjct: 448 PVRFGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPESVQQSARCIIGRDYPLPMVDHS 507
Query: 363 SASKECKRKLGEAYA 377
AS+ ++ + YA
Sbjct: 508 KASQVNIERIKQVYA 522
>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
Length = 558
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/386 (48%), Positives = 258/386 (66%), Gaps = 9/386 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPV 59
V+ +A + VSHT+F+P I+++NGGKPPLTYQ ++ LA PL +P +
Sbjct: 121 VEGHAREHNVTTHVEVSHTIFHPETIVKRNGGKPPLTYQKYVSLASACTIPLPLPAPQKL 180
Query: 60 SLSSLPPVGDVGYFEISEV---PTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ P D + PT+ EL E F GGE+EAL ++ + +S K
Sbjct: 181 PGKGVEPEKDSQERKDQSCYDPPTMNELDIDEGSLLECK-FPGGETEALSRMEQCLSRKA 239
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
W+ +FEKP P++ L+P+TTVLSPYLKFGCLS+R FY + + + +KH+ PPVSL+G
Sbjct: 240 WICSFEKPNTSPNS-LEPSTTVLSPYLKFGCLSARLFYSRIQETIKG-QKHSQPPVSLIG 297
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
Q++WR+F+Y VA TPNFD+M GN +C Q+ W + E L AW E RTGYP+IDAIM QLR
Sbjct: 298 QMMWREFYYCVAAVTPNFDKMSGNDVCIQVDWDTNKEYLNAWTEGRTGYPFIDAIMRQLR 357
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DWA+N GNW+WLS S+FF+Q
Sbjct: 358 QEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFFHQ 417
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y R+YSPV+FGKK DP G YI+ ++P L P IYEPW A L Q + CIIG+DYP
Sbjct: 418 YFRVYSPVAFGKKTDPEGKYIKKYVPELARFPSGIIYEPWKANLETQKKLGCIIGKDYPK 477
Query: 357 PVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ SK +++ AY N+ L
Sbjct: 478 RIVVHEEISKTNIQRMSAAYRRNKAL 503
>gi|380017772|ref|XP_003692819.1| PREDICTED: cryptochrome-1-like [Apis florea]
Length = 571
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/397 (51%), Positives = 262/397 (65%), Gaps = 27/397 (6%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V VSHTL+ +II++NG K PLTY F Q + AS
Sbjct: 125 RVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDKSPLTYHQF-----QTVVASMD 179
Query: 57 LPVSLSSLPPVGDVG--YFEISE-------VPTVEELGYKGYGQEELSP-FRGGESEALK 106
P VG Y + E VPT+EELG+ G L P + GGESEAL
Sbjct: 180 PPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGL--LPPVWVGGESEALA 237
Query: 107 KLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK 166
+L + K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ +KK
Sbjct: 238 RLERHLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK 296
Query: 167 HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
PP+SL GQLLWR+FFY A PNFDRM+GN IC QIPW + E LA W +TG+P
Sbjct: 297 -AVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFP 355
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
WIDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+
Sbjct: 356 WIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWM 415
Query: 287 WLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
WLSCSSFF Q+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW APL +Q A
Sbjct: 416 WLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAA 475
Query: 347 KCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLN 383
KCIIG+DY P+V+H +S+ ++ + Y Q+LN
Sbjct: 476 KCIIGKDYSLPMVNHSKSSRINIERMKQVY---QQLN 509
>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
Length = 596
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/400 (50%), Positives = 263/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 135 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAI------------ISRM 182
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P +RGGE+EA
Sbjct: 183 ELPRKPVGSVTSQQMEGCQAEIQESHDETYGVPSLEELGFPTEG---LGPAVWRGGETEA 239
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVA++E+P+ + S+ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 240 LARLDKHLERKAWVASYERPRMNASSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYRKV 298
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 299 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 358
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 359 FPWIDAIMAQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 418
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 419 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 478
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H AS+ ++ + Y + G
Sbjct: 479 AAKCIIGVDYPRPIVNHAEASRLNIERMKQVYQQLSRYRG 518
>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
Length = 606
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/379 (49%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
++ A+ AG+EVF +SHTL++ II+ NGG+ PLTY+ F L + P +
Sbjct: 113 IRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITA 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ PV D + + VP++EELG++ G + + GGE+EAL +L + K W
Sbjct: 173 EIMGKCSTPVSD-DHDDKFGVPSLEELGFETEGLST-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK+++P +SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P+FD+M+ N IC QIPW + E LA W E +TG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LP+L+ P ++IY+PW AP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRINIERMKQIY 488
>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
Length = 598
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/374 (48%), Positives = 252/374 (67%), Gaps = 6/374 (1%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV----SLS 62
A G+E +HTL+NP II+ N PPLT++ F + + PLP ++
Sbjct: 117 AQEYGVETVVRNTHTLYNPDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMA 176
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+ E VP++EELG++ G + L ++GGE+EAL++L + + K WVANFE
Sbjct: 177 RCRTQISDNHDEHYGVPSLEELGFRTQG-DSLHVWKGGETEALERLNKHLDRKAWVANFE 235
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+P+ + L P+ T LSPYL+FGCLS R FY L D++ +++ +SPP+SL GQLLWR+
Sbjct: 236 RPRISGQS-LFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRRSSPPLSLFGQLLWRE 294
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFYT PNFD M+GN IC QIPW ++ E LA W E RTG+PWIDAIM QLR+ GW+H
Sbjct: 295 FFYTAGTNNPNFDHMEGNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIH 354
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE G VF+ LL+D+DW++N G+W+WLSCS+FF Q+ Y
Sbjct: 355 HLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCSAFFQQFFHCYC 414
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG++ DP+G+YIR ++P LKD P YIYEPW AP ++Q A CI+G DYP P+++H
Sbjct: 415 PVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMINHA 474
Query: 363 SASKECKRKLGEAY 376
+S+ ++ + Y
Sbjct: 475 ESSRLNIERMKQVY 488
>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/379 (49%), Positives = 261/379 (68%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
++ A+ AG+EVF +SHTL++ II+ NGG+ PLTY+ F L + P +
Sbjct: 113 IRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITA 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ PV D + VP++EELG++ G + + GGE+EAL +L + K W
Sbjct: 173 EIMGKCSTPVSD-DHDNKFGVPSLEELGFETEGLST-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK+++P +SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P+FD+M+ N IC QIPW + E LA W E +TG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LP+L+ P ++IY+PW AP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRINIERMKQIY 488
>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/379 (49%), Positives = 261/379 (68%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
++ A+ AG+EVF +SHTL++ II+ NGG+ PLTY+ F L + P +
Sbjct: 113 IRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITA 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ PV D + VP++EELG++ G + + GGE+EAL +L + K W
Sbjct: 173 EIMGKCSTPVSD-DHDNKFGVPSLEELGFETEGLST-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK+++P +SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSTPSLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P+FD+M+ N IC QIPW + E LA W E +TG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LP+L+ P ++IY+PW AP ++Q AKCIIG YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRINIERMKQIY 488
>gi|149725124|ref|XP_001490350.1| PREDICTED: cryptochrome-2-like [Equus caballus]
Length = 579
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 123 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 170
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 171 ELPRKPVGSVTSQQMESCRADIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 227
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + +A L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 228 LARLDKHLERKAWVANYERPRMN-AASLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKV 286
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W EA+TG
Sbjct: 287 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEAKTG 346
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 347 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 406
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +Q
Sbjct: 407 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPEAVQK 466
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 467 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 506
>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
Length = 538
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 251/374 (67%), Gaps = 15/374 (4%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
I V S V+HTL+ II++NGG+ PLTY F + S PLPV + VGD
Sbjct: 122 NITVISLVAHTLYKLECIIERNGGRAPLTYHQFQSVVAS--MESPPLPVPPVTSTVVGDA 179
Query: 71 ------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFE 122
+ E VPT+EELG+ G L P ++GGESEAL +L + K WVA+F
Sbjct: 180 VSPISDDHDEKYGVPTLEELGFDTEG---LLPGVWQGGESEALSRLERHLERKAWVASFG 236
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
KPK P + L P+ T LSPYL+FGCLS+R FY L D+Y+ +KK PP+SL GQ+LWR+
Sbjct: 237 KPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLNDLYRKIKK-AVPPLSLHGQVLWRE 294
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFY A PNFDRM GN IC Q+PW + E LA W +TG+PWIDAIM QLR+ GW+H
Sbjct: 295 FFYCAATKNPNFDRMIGNPICVQVPWDKNPEALAKWANGQTGFPWIDAIMTQLREEGWIH 354
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSFF Q+ Y
Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 414
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG+K DPNG+YIR +LPVLK+MP +YI+EPW P ++Q AKC IG DYP P+++H
Sbjct: 415 PVRFGRKADPNGDYIRKYLPVLKNMPTKYIHEPWNCPESVQKAAKCTIGVDYPLPMLNHS 474
Query: 363 SASKECKRKLGEAY 376
SK ++ + Y
Sbjct: 475 VVSKHNIERMKQVY 488
>gi|359073433|ref|XP_002693610.2| PREDICTED: cryptochrome-2 [Bos taurus]
Length = 591
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 130 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAI------------ISRM 177
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 178 ELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 234
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 235 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 293
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 294 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 353
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 354 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 413
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 414 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 473
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKC+IG DYP P+V+H AS+ ++ + Y + G
Sbjct: 474 AAKCVIGVDYPRPIVNHAEASRLNIERMKQVYQQLSRYRG 513
>gi|355681095|gb|AER96735.1| cryptochrome 2 [Mustela putorius furo]
Length = 521
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/400 (48%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 60 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAI------------ISRM 107
Query: 63 SLP--PVGDVGYFEISE--------------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V ++ VP++EELG+ G L P ++GGE+EA
Sbjct: 108 ELPKKPVGSVTSQQMESCRADIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 164
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 165 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 223
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 224 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 283
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 284 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 343
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP+LK P YIYEPW AP +IQ
Sbjct: 344 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQK 403
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 404 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 443
>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
Length = 525
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/405 (49%), Positives = 265/405 (65%), Gaps = 27/405 (6%)
Query: 2 KVKDYASTA-----GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP 56
+V+D+ +A GI V VSHTL+ +II++N GKPPLTY F + + P
Sbjct: 127 RVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNNGKPPLTYHQFQNIVAS-MNPPEP 185
Query: 57 LPVSLSSLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSP-FRGGESEALKKL 108
PVS + +G+ Y + + VPT+EELG+ G L P + GGESEAL +L
Sbjct: 186 -PVSTVTAACIGN-AYTPLKDDHDDHYGVPTLEELGFDTEGL--LPPVWVGGESEALARL 241
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK--- 165
+ K WVA+F +PK P + L P+ T LSPYL+FGCLS+R FY LTD+Y+ V+
Sbjct: 242 ERHLERKAWVASFGRPKMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKVQDDC 300
Query: 166 -----KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWRE 220
K PP+SL GQLLWR+FFY A NFDRM+GN IC QIPW + E LA W
Sbjct: 301 NPIVIKKAVPPLSLHGQLLWREFFYCAATKNSNFDRMQGNPICVQIPWDKNVEALAKWAN 360
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
+TG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++
Sbjct: 361 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSV 420
Query: 281 NNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPL 340
N G W+WLSCSSFF Q+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW APL
Sbjct: 421 NAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPL 480
Query: 341 TIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
+IQ AKC+IG++Y P+V+H+ S+ ++ + Y K G+
Sbjct: 481 SIQHAAKCVIGKEYSLPMVNHNKTSRINIERMKQVYQQLNKYRGE 525
>gi|440895552|gb|ELR47705.1| Cryptochrome-2, partial [Bos grunniens mutus]
Length = 564
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 103 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAI------------ISRM 150
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 151 ELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 207
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 208 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 266
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 267 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 326
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 327 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 386
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 387 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 446
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKC+IG DYP P+V+H AS+ ++ + Y + G
Sbjct: 447 AAKCVIGVDYPRPIVNHAEASRLNIERMKQVYQQLSRYRG 486
>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
Length = 514
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/392 (48%), Positives = 263/392 (67%), Gaps = 14/392 (3%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWAS 54
M V A AG++V SHTL+ DII NGG+PPLTY+ F + QP+ +
Sbjct: 113 MAVMKLAKEAGVKVILRTSHTLYKLQDIIDVNGGQPPLTYKRFQAILSKMDPPDQPVDSI 172
Query: 55 SPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESI 112
+ V + P D + E VP++EELG+ + L+P + GGE+EAL +L +
Sbjct: 173 TASTVDNLTTPIRDD--HDEKFGVPSLEELGFD---TDNLNPVVWPGGETEALTRLERHL 227
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
K WVA+FE+PK S+ L + T LSPYL+FGCLS R FY+ LT++Y+ VK+ PP+
Sbjct: 228 ERKAWVASFERPKMTASSLLA-SPTGLSPYLRFGCLSPRLFYKKLTELYKKVKRSNHPPL 286
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
SL GQLLWR+FFYT A PNFD+M N IC QIPW + E LA W E +TG+PWIDAIM
Sbjct: 287 SLYGQLLWREFFYTAATNNPNFDKMVNNTICVQIPWDKNPEALAKWAEGQTGFPWIDAIM 346
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
QL++ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSS
Sbjct: 347 AQLQQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSS 406
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
FF Q+ +Y PV+FG++ DPNG++IR +LP L+ P +YIY+PW +P ++Q AKCIIG+
Sbjct: 407 FFQQFFHVYCPVNFGRRTDPNGDFIRKYLPKLRGFPAKYIYDPWNSPESVQKAAKCIIGK 466
Query: 353 DYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
DYP P+V+H S+ ++ + Y + G
Sbjct: 467 DYPLPMVNHAETSRINVERMKQVYQQLSRYRG 498
>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome-2 [Bos taurus]
gi|296479702|tpg|DAA21817.1| TPA: cryptochrome 2-like [Bos taurus]
Length = 585
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 124 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAI------------ISRM 171
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 172 ELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 228
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 229 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 287
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 288 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 347
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 348 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 407
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 408 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 467
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKC+IG DYP P+V+H AS+ ++ + Y + G
Sbjct: 468 AAKCVIGVDYPRPIVNHAEASRLNIERMKQVYQQLSRYRG 507
>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
Length = 524
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/385 (50%), Positives = 258/385 (67%), Gaps = 21/385 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQP---LWASS 55
++K A + V + VSHT+++ + + NG K PLTY QS + G P L A
Sbjct: 118 EIKKLADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVVAKFGTPEKALNAPG 177
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEEL--GYKGYGQEELSPFRGGESEALKKLRESIS 113
LP +L + VP +EE+ G G+E +RGGE+EAL ++ + +S
Sbjct: 178 KLPKQCQTL------LLSDKYNVPLLEEMQVDLTGLGKEL---YRGGETEALARMEKYMS 228
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
++WV F KP P++ ++P+TTVLSPYLKFGCLS R Y L ++ +KHTSPP S
Sbjct: 229 QQDWVCKFSKPDTSPNS-IEPSTTVLSPYLKFGCLSPRLMYHRLHEIIDG-RKHTSPPTS 286
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND--DELLAAWREARTGYPWIDAI 231
L GQ+LWR+F+YT TPNF+RM GN +CKQIPW D DE AW+ RTGYP+IDAI
Sbjct: 287 LTGQMLWREFYYTCGAYTPNFNRMVGNPVCKQIPWKVDPEDEHFVAWKNGRTGYPFIDAI 346
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M+QLR GW+HHLARH VACFLTRGD++V WE G+ VF+ LL+D+DWA+N GNW+WLS S
Sbjct: 347 MIQLRTEGWIHHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADWALNAGNWMWLSAS 406
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+FF+ Y R+YSPV+FGKK D +G+YI+ +LPVLK P EYIYEPW APL++Q A CIIG
Sbjct: 407 AFFHSYFRVYSPVAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPLSVQQTAGCIIG 466
Query: 352 RDYPAPVVSHDSASKECKRKLGEAY 376
+DYP +V HD KE K+ +AY
Sbjct: 467 KDYPKRIVDHDVVMKENLAKMKKAY 491
>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 539
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/419 (47%), Positives = 273/419 (65%), Gaps = 18/419 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V++ A A +EV S T+++P +I++KNGGK PLTYQ + LA +P P+ +
Sbjct: 100 VRELARQAKVEVQVEKSLTIYDPDEILKKNGGKIPLTYQKYGSLASM---CKTPGPIGVP 156
Query: 63 SLPPVGDVGYFEISEV--------PTVEELGYKGYGQEELSP--FRGGESEALKKLRESI 112
P V + E PT++EL + QE+L F GGE+EAL++L++ +
Sbjct: 157 DKVPAESVPEKDKRERKDGKCYDPPTLDELKVR---QEDLGECKFPGGETEALRRLQDYM 213
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
S K WV FEKP P++ L+P+TTVLSPY+KFGCLS+R F L V +KH+ PPV
Sbjct: 214 SRKSWVCAFEKPNTSPNS-LEPSTTVLSPYVKFGCLSARLFMAELKKVLAG-QKHSQPPV 271
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
SLVGQL+WR+F+Y A PNFD+M GN +C Q+PW + E LAAW RTGYP+IDAIM
Sbjct: 272 SLVGQLMWREFYYCAAAAEPNFDKMVGNSVCLQVPWETNPEHLAAWTHGRTGYPFIDAIM 331
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
QLR+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DWA+N GNW+WLS S+
Sbjct: 332 RQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASA 391
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
FF+Q+ R+YSPV+FGKK DP G YI+ ++P L P IYEPW A L Q + CIIG+
Sbjct: 392 FFHQFFRVYSPVAFGKKTDPEGKYIKKYVPELAKFPAGIIYEPWKANLETQKKLGCIIGK 451
Query: 353 DYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQK 411
DYP +V H+ SK+ ++ EAY N+ L + + + G E SG+++K
Sbjct: 452 DYPHRIVIHEEISKKNISRMSEAYRKNKALKEGGAATTKEVDSKSDAGMEPTPSGKKRK 510
>gi|406507547|gb|AFS34617.1| cryptochrome 2 [Clunio marinus]
Length = 657
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/381 (50%), Positives = 253/381 (66%), Gaps = 13/381 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-----PLWASSPL 57
+ + IEV S VSHTL+ II+KN GK PLTY F + P A+
Sbjct: 122 ITEMCKELNIEVISAVSHTLYKLEKIIEKNNGKAPLTYHQFQAIIASMEPPPPAEATIAE 181
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
+ ++ P+ D + + VPT+EELG+ G L P + GGE+EAL +L + K
Sbjct: 182 DIIGNTRTPIDD-DHDDRYGVPTLEELGFDTEG---LKPPIWIGGETEALARLERHLERK 237
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVA+F +PK P + L + T LSPYL+FGCLS+R FY LTD+Y+ +KK T PP+SL
Sbjct: 238 AWVASFGRPKMSPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-TCPPLSLH 295
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFY A PNFD+M GN IC QIPW + E LA W +TGYPWIDAIM QL
Sbjct: 296 GQLLWREFFYCCATKNPNFDKMSGNPICVQIPWDKNPEALAKWANGQTGYPWIDAIMSQL 355
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRG++++ WE+G VF+ LL+D+DW++N G WLWLSCSSFF
Sbjct: 356 REEGWIHHLARHAVACFLTRGNLWISWEEGMKVFEELLLDADWSVNAGMWLWLSCSSFFQ 415
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Q+ Y PV FG+K DPNG+YIR ++P LK+ P +YI+EPW A IQ AKCIIG+DYP
Sbjct: 416 QFFHCYCPVKFGRKADPNGDYIRKYIPALKNFPTKYIHEPWVASEAIQRTAKCIIGKDYP 475
Query: 356 APVVSHDSASKECKRKLGEAY 376
P+++H AS+ ++ + Y
Sbjct: 476 LPMINHVIASRNNMGRMKQVY 496
>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
Length = 580
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/400 (48%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 120 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAI------------ISRM 167
Query: 63 SLP--PVGDVGYFEISE--------------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V ++ VP++EELG+ G L P ++GGE+EA
Sbjct: 168 ELPKKPVGSVTSQQMESCRADIQESHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 224
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 225 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 283
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 284 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 343
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 344 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 403
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP+LK P YIYEPW AP +IQ
Sbjct: 404 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQK 463
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 464 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 503
>gi|395815587|ref|XP_003781307.1| PREDICTED: cryptochrome-2 [Otolemur garnettii]
Length = 612
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 151 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 198
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 199 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 255
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 256 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 314
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 315 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 374
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N+G+
Sbjct: 375 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNSGS 434
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 435 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 494
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 495 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 534
>gi|345483304|ref|XP_001606405.2| PREDICTED: cryptochrome-1 [Nasonia vitripennis]
Length = 627
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/372 (51%), Positives = 256/372 (68%), Gaps = 11/372 (2%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPVSL--SSLP 65
GI V VSHTL+ +II+KNGGKPPLTY F + + P + ++ + + S+
Sbjct: 181 GITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIARMDPPEYPAAAVTAACIGSAYT 240
Query: 66 PVGDVGYFEISEVPTVEELGYKGYGQEELSP-FRGGESEALKKLRESISDKEWVANFEKP 124
P+ D + + VPT+EELG+ G ++P + GGE+EAL +L + K WVA+F +P
Sbjct: 241 PLKD-DHDDFFGVPTLEELGFDTEGL--MAPVWVGGETEALARLERHLERKAWVASFGRP 297
Query: 125 KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFF 184
K P + L P+ T LSPYL+FGCLS+R FY L D+Y+ +KK T PP+SL GQLLWR+FF
Sbjct: 298 KMTPQSLL-PSQTGLSPYLRFGCLSTRLFYYQLADLYKKIKK-TIPPLSLHGQLLWREFF 355
Query: 185 YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
Y A PNFDRM GN IC QIPW + L+ W +TG+PWIDAIM QLR+ GW+H L
Sbjct: 356 YCAATNNPNFDRMHGNPICVQIPWDKNVVALSKWANGQTGFPWIDAIMTQLREEGWIHQL 415
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPV 304
ARH VACFLTRGD+++ WE+G VFD LL+D+DW+IN G W+WLSCSSFF Q+ Y PV
Sbjct: 416 ARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSINAGMWMWLSCSSFFQQFFHCYCPV 475
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
FG+K DPNG+YIR +LPVLK+ P YI+EPW APL++Q AKCIIG++Y P+V+H +
Sbjct: 476 RFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQRAAKCIIGQEYALPMVNHSKS 535
Query: 365 SKECKRKLGEAY 376
S+ ++ Y
Sbjct: 536 SRINVERMKRVY 547
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/397 (48%), Positives = 262/397 (65%), Gaps = 13/397 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ A G++ ++ +SHTL++ I++ NGG PPLTY+ FL + G+P V
Sbjct: 114 IQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEP--EKPARDV 171
Query: 60 SLSSLPP-VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
S+ V V + VP++ +LG + E L P GGES AL++L + + WV
Sbjct: 172 SIEDFQRCVTPVDVDRVYAVPSLADLGLQ-VEAEVLWP--GGESHALQRLEKHFQSQGWV 228
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
ANF KP+ P++ L P+TT LSPYL GCLS R FY L +Y K H+ PPVSL GQ+
Sbjct: 229 ANFSKPRTIPNSLL-PSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSKNHSLPPVSLQGQV 287
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYTVA TPNF +M+GN IC QI W +D E L WR A+TG+PWIDAIM QLR+
Sbjct: 288 LWREFFYTVASATPNFTKMEGNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQE 347
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD+++ WE+G VF+ L+D+D+++N GNW+WLS S+FF++Y
Sbjct: 348 GWIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHKYT 407
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI+ PV FG++ DP G Y+R +LPVLK+ P +YIYEPW AP +Q A CIIG+DYP P+
Sbjct: 408 RIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPI 467
Query: 359 VSHDSASKE---CKRKLGEAYALNQKLNGQVSEDGLK 392
VSH AS+ R++ +L V++D ++
Sbjct: 468 VSHIEASQRNLALMRQVRTEQQTTAELTRDVADDPME 504
>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
Length = 581
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/400 (48%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 120 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAI------------ISRM 167
Query: 63 SLP--PVGDVGYFEISE--------------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V ++ VP++EELG+ G L P ++GGE+EA
Sbjct: 168 ELPKKPVGSVTSQQMESCRADIQESHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 224
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 225 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 283
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 284 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 343
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 344 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 403
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP+LK P YIYEPW AP +IQ
Sbjct: 404 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQK 463
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 464 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 503
>gi|410973791|ref|XP_003993331.1| PREDICTED: cryptochrome-2, partial [Felis catus]
Length = 582
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II NG KPPLTY+ F + +S
Sbjct: 121 IMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAI------------ISRM 168
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 169 ELPKKPVGSVTSQQMESCRAEIQENHDEAYGVPSLEELGFPTEG---LGPAVWQGGETEA 225
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 226 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 284
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 285 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 344
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 345 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 404
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP+LK P YIYEPW AP +IQ
Sbjct: 405 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPMLKGFPSRYIYEPWNAPESIQK 464
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 465 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 504
>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
gi|402893708|ref|XP_003910033.1| PREDICTED: cryptochrome-2 [Papio anubis]
gi|355566579|gb|EHH22958.1| Cryptochrome-2 [Macaca mulatta]
gi|355752191|gb|EHH56311.1| Cryptochrome-2 [Macaca fascicularis]
Length = 593
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAI------------ISRM 179
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 180 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 236
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 237 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 295
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 355
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 356 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 415
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 416 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 475
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 476 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/397 (48%), Positives = 262/397 (65%), Gaps = 13/397 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ A G++ ++ +SHTL++ I++ NGG PPLTY+ FL + G+P V
Sbjct: 135 IQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEP--EKPARDV 192
Query: 60 SLSSLPP-VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
S+ V V + VP++ +LG + E L P GGES AL++L + + WV
Sbjct: 193 SIEDFQRCVTPVDVDRVYAVPSLADLGLQ-VEAEVLWP--GGESHALQRLEKHFQSQGWV 249
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
ANF KP+ P++ L P+TT LSPYL GCLS R FY L +Y K H+ PPVSL GQ+
Sbjct: 250 ANFSKPRTIPNSLL-PSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSKNHSLPPVSLQGQV 308
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYTVA TPNF +M+GN IC QI W +D E L WR A+TG+PWIDAIM QLR+
Sbjct: 309 LWREFFYTVASATPNFTKMEGNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQE 368
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD+++ WE+G VF+ L+D+D+++N GNW+WLS S+FF++Y
Sbjct: 369 GWIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHKYT 428
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI+ PV FG++ DP G Y+R +LPVLK+ P +YIYEPW AP +Q A CIIG+DYP P+
Sbjct: 429 RIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPI 488
Query: 359 VSHDSASKE---CKRKLGEAYALNQKLNGQVSEDGLK 392
VSH AS+ R++ +L V++D ++
Sbjct: 489 VSHIEASQRNLALMRQVRTEQQTTAELTRDVADDPME 525
>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
Length = 594
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F L +S
Sbjct: 131 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAL------------ISRM 178
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 179 ELPKKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 235
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 236 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYRKV 294
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 295 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 354
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 355 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 414
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q
Sbjct: 415 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQK 474
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 475 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 514
>gi|73983386|ref|XP_540761.2| PREDICTED: cryptochrome-2 [Canis lupus familiaris]
Length = 593
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/400 (48%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAI------------ISRM 179
Query: 63 SLP--PVGDVGYFEISE--------------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V ++ VP++EELG+ G L P ++GGE+EA
Sbjct: 180 ELPKKPVGSVTSQQMESCRADIQDNHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 236
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 237 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 295
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 355
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 356 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 415
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP+LK P YIYEPW AP +IQ
Sbjct: 416 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQK 475
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 476 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2 isoform 1 [Sus scrofa]
Length = 594
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F L +S
Sbjct: 133 IMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAL------------ISRM 180
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 181 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 237
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 238 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 296
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 297 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 356
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 357 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 416
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q
Sbjct: 417 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQK 476
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 477 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 516
>gi|390470436|ref|XP_003734285.1| PREDICTED: cryptochrome-2 isoform 2 [Callithrix jacchus]
Length = 560
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 99 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 146
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 147 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 203
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 204 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 262
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 263 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 322
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 323 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 382
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 383 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 442
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 443 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 482
>gi|335281976|ref|XP_003353935.1| PREDICTED: cryptochrome-2 isoform 2 [Sus scrofa]
Length = 461
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/396 (49%), Positives = 260/396 (65%), Gaps = 34/396 (8%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLP- 65
A AG+EV + SHTL++ II+ NG KPPLTY+ F L +S LP
Sbjct: 4 AKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAL------------ISRMELPK 51
Query: 66 -PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKL 108
PVG V + E VP++EELG+ G L P ++GGE+EAL +L
Sbjct: 52 KPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARL 108
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+ + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK+++
Sbjct: 109 DKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNS 167
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
+PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWI
Sbjct: 168 TPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWI 227
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WL
Sbjct: 228 DAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWL 287
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
SCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q AKC
Sbjct: 288 SCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKC 347
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
IIG DYP P+V+H S+ ++ + Y + G
Sbjct: 348 IIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 383
>gi|380797951|gb|AFE70851.1| cryptochrome-2 isoform 1, partial [Macaca mulatta]
Length = 579
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 118 IMKMAKEAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAI------------ISRM 165
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 166 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 222
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 223 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 281
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 282 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 341
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 342 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 401
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 402 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 461
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 462 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 501
>gi|426368089|ref|XP_004051045.1| PREDICTED: cryptochrome-2 isoform 2 [Gorilla gorilla gorilla]
Length = 532
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 71 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 118
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 119 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 175
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 176 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 234
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 235 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 294
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 295 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 354
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 355 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQK 414
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 415 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 454
>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
gi|397473569|ref|XP_003808280.1| PREDICTED: cryptochrome-2 isoform 2 [Pan paniscus]
Length = 532
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 71 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 118
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 119 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 175
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 176 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 234
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 235 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 294
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 295 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 354
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 355 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQK 414
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 415 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 454
>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
gi|81882058|sp|Q9R194.1|CRY2_MOUSE RecName: Full=Cryptochrome-2
gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
Length = 592
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/391 (49%), Positives = 262/391 (67%), Gaps = 16/391 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F L + P V++S
Sbjct: 131 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKP-AVAVS 189
Query: 63 SLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESIS 113
S + EI E VP++EELG+ G L P ++GGE+EAL +L + +
Sbjct: 190 S--QQMESCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLE 244
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+S
Sbjct: 245 RKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLS 303
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM
Sbjct: 304 LFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMT 363
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+F
Sbjct: 364 QLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAF 423
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q AKCIIG D
Sbjct: 424 FQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVD 483
Query: 354 YPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
YP P+V+H S+ ++ + Y + G
Sbjct: 484 YPRPIVNHAETSRLNIERMKQIYQQLSRYRG 514
>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
Length = 553
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/375 (50%), Positives = 256/375 (68%), Gaps = 17/375 (4%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
IEV + SHTL++P II+KNGGK PLTY+ F + + P P S + +G
Sbjct: 129 NIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNIIASV--DAPPPPESDITFESIGR- 185
Query: 71 GYFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANF 121
GY + E VPT+EELG+ G L P + GGE+EAL +L + K WVA+F
Sbjct: 186 GYTPMDESMDDRFSVPTLEELGFDTDG---LMPAVWHGGETEALTRLERHLERKAWVASF 242
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+PK P + L + T LSPYL+FGCLS R F+Q LT++Y+ +KK PP+SL GQ+LWR
Sbjct: 243 GRPKMTPQSLLA-SQTGLSPYLRFGCLSVRLFHQQLTNLYKKIKK-AQPPLSLHGQVLWR 300
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+FFY A PNFD+M GN IC QIPW ++ E LA W +TG+PWIDAIM QLR+ GW+
Sbjct: 301 EFFYCAATNNPNFDKMIGNPICVQIPWDSNAEALAKWANGQTGFPWIDAIMTQLREEGWI 360
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSFF+Q+ Y
Sbjct: 361 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGTWMWLSCSSFFHQFFHCY 420
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
PV FG+K DPNG++I+ + PVLK+ P +YI+EPW AP ++Q AKC+IG+DYP P+V+H
Sbjct: 421 CPVRFGRKVDPNGDFIKKYQPVLKNFPLQYIHEPWNAPESVQRAAKCVIGKDYPLPMVNH 480
Query: 362 DSASKECKRKLGEAY 376
S+ ++ + Y
Sbjct: 481 LEVSQLNIERMKQVY 495
>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
Length = 589
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/388 (49%), Positives = 259/388 (66%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ +
Sbjct: 128 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 187
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ S + E VP++EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 188 QQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKA 244
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL G
Sbjct: 245 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFG 303
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR
Sbjct: 304 QLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 363
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 364 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 423
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP
Sbjct: 424 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPR 483
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 484 PIVNHAETSRLNIERMKQIYQQLSRYRG 511
>gi|118572252|sp|Q49AN0.2|CRY2_HUMAN RecName: Full=Cryptochrome-2
gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
Length = 593
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/388 (49%), Positives = 259/388 (66%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ +
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 191
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ S + E VP++EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 192 QQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKA 248
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL G
Sbjct: 249 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFG 307
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR
Sbjct: 308 QLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 367
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 368 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 427
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP
Sbjct: 428 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPR 487
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 488 PIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|431915736|gb|ELK16069.1| Cryptochrome-2 [Pteropus alecto]
Length = 593
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 179
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 180 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 236
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 237 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 295
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 355
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 356 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 415
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 416 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 475
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 476 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/416 (47%), Positives = 269/416 (64%), Gaps = 20/416 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-SL 61
++ + G EV S V H+L++ I+ NGG PPLTY+ FL + Q +PV +L
Sbjct: 114 IRRLGAELGFEVLSRVGHSLYDTKRILDLNGGSPPLTYKRFLHILSQ--LGDPEVPVRNL 171
Query: 62 SS------LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
++ + P + G E VP +L + LSP+ GGE+E L++L + ++D+
Sbjct: 172 TAEDFQRCMSP--EPGLAERYRVPVPADLEIP---PQSLSPWTGGETEGLRRLEQHLTDQ 226
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVANF KP+ P++ L P+TT LSPY GCLS R F+Q L+++Y K H+ PPVSL
Sbjct: 227 GWVANFTKPRTIPNSLL-PSTTGLSPYFSMGCLSVRTFFQRLSNIYAQAKHHSLPPVSLQ 285
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYTVA T NF +M GN IC QI W D E L W+ A+TG+PWIDAIM QL
Sbjct: 286 GQLLWREFFYTVASATQNFTQMAGNPICLQIHWYEDAERLHKWKTAQTGFPWIDAIMTQL 345
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+D++IN GNW+WLS S+FF+
Sbjct: 346 RQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH 405
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI+ PV FGK+ DP G YIR +LPVLK+ P +YIYEPWTA Q +A CIIGRDYP
Sbjct: 406 HYTRIFCPVRFGKRTDPEGQYIRKYLPVLKNFPTKYIYEPWTASEEEQRQAGCIIGRDYP 465
Query: 356 APVVSHDSASK---ECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGR 408
P+V+H AS + R++ E +L ++D ++ R EEN G+
Sbjct: 466 FPMVNHKEASDRNLQLMRRVREEQRGTAQLTRDDADDPMEMKRDC--SEENTARGK 519
>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/388 (49%), Positives = 259/388 (66%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ +
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 191
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ S + E VP++EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 192 QQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKA 248
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL G
Sbjct: 249 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKRVKRNSTPPLSLFG 307
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR
Sbjct: 308 QLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 367
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 368 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 427
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP
Sbjct: 428 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPR 487
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 488 PIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/388 (49%), Positives = 259/388 (66%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ +
Sbjct: 153 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 212
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ S + E VP++EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 213 QQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKA 269
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL G
Sbjct: 270 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFG 328
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR
Sbjct: 329 QLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 388
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 389 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 448
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP
Sbjct: 449 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPR 508
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 509 PIVNHAETSRLNIERMKQIYQQLSRYRG 536
>gi|344247813|gb|EGW03917.1| Cryptochrome-2 [Cricetulus griseus]
Length = 577
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 116 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 163
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 164 ELPKKPVGAVTSQQMENCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 220
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 221 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 279
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 280 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 339
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 340 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 399
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q
Sbjct: 400 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQK 459
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 460 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 499
>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 isoform 1 [Callithrix jacchus]
Length = 593
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 179
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 180 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 236
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 237 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 295
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 355
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 356 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 415
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 416 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 475
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 476 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
Length = 532
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/388 (49%), Positives = 259/388 (66%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ +
Sbjct: 71 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 130
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ S + E VP++EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 131 QQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKA 187
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL G
Sbjct: 188 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFG 246
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR
Sbjct: 247 QLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 306
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 307 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 366
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP
Sbjct: 367 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPR 426
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 427 PIVNHAETSRLNIERMKQIYQQLSRYRG 454
>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
Length = 584
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/391 (49%), Positives = 262/391 (67%), Gaps = 16/391 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F L + P V++S
Sbjct: 123 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKP-AVAVS 181
Query: 63 SLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESIS 113
S + EI E VP++EELG+ G L P ++GGE+EAL +L + +
Sbjct: 182 S--QQMESCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLE 236
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+S
Sbjct: 237 RKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLS 295
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM
Sbjct: 296 LFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMT 355
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+F
Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAF 415
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q AKCIIG D
Sbjct: 416 FQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVD 475
Query: 354 YPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
YP P+V+H S+ ++ + Y + G
Sbjct: 476 YPRPIVNHAETSRLNIERMKQIYQQLSRYRG 506
>gi|444707572|gb|ELW48837.1| Cryptochrome-2 [Tupaia chinensis]
Length = 577
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 116 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 163
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 164 ELPRKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 220
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 221 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 279
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 280 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 339
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 340 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 399
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q
Sbjct: 400 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQK 459
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKC+IG DYP P+V+H S+ ++ + Y + G
Sbjct: 460 AAKCVIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 499
>gi|351696947|gb|EHA99865.1| Cryptochrome-2 [Heterocephalus glaber]
Length = 593
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 179
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 180 ELPKKPVGAVSSQQMKSCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 236
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 237 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 295
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 355
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 356 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 415
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q
Sbjct: 416 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQK 475
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 476 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|348558770|ref|XP_003465189.1| PREDICTED: cryptochrome-2 [Cavia porcellus]
Length = 593
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 262/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 179
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 180 ELPKKPVGAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 236
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 237 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 295
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 355
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 356 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 415
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 416 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 475
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 476 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2 [Pongo abelii]
Length = 614
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 153 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 200
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 201 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 257
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 258 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 316
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 317 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 376
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 377 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 436
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 437 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQK 496
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 497 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 536
>gi|403254649|ref|XP_003920073.1| PREDICTED: cryptochrome-2 [Saimiri boliviensis boliviensis]
Length = 593
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 179
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 180 ELPKKPVGSVTSQQMDSCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 236
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 237 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 295
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 355
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 356 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 415
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 416 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 475
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 476 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|426368087|ref|XP_004051044.1| PREDICTED: cryptochrome-2 isoform 1 [Gorilla gorilla gorilla]
Length = 614
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 153 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 200
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 201 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 257
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 258 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 316
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 317 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 376
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 377 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 436
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 437 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQK 496
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 497 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 536
>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
gi|397473567|ref|XP_003808279.1| PREDICTED: cryptochrome-2 isoform 1 [Pan paniscus]
Length = 614
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 153 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 200
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 201 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 257
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 258 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 316
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 317 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 376
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 377 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 436
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 437 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQK 496
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 497 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 536
>gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens]
Length = 461
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/384 (49%), Positives = 258/384 (67%), Gaps = 10/384 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV----SLS 62
A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ + +
Sbjct: 4 AKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQME 63
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
S + E VP++EELG+ G L P ++GGE+EAL +L + + K WVAN
Sbjct: 64 SCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKAWVAN 120
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL GQLLW
Sbjct: 121 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLW 179
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 180 REFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 239
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 240 IHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHC 299
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP P+V+
Sbjct: 300 YCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVN 359
Query: 361 HDSASKECKRKLGEAYALNQKLNG 384
H S+ ++ + Y + G
Sbjct: 360 HAETSRLNIERMKQIYQQLSRYRG 383
>gi|390355184|ref|XP_785873.3| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 754
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/380 (49%), Positives = 254/380 (66%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF---LKLAGQPLWASSPLPV 59
+ A AG++V S VSHTL++P +I+ N +PPLTY+ F + L G P++ + L
Sbjct: 128 ISTLAQEAGVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLMGIPIYPAEALEA 187
Query: 60 S-LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ L D + + +PT+EELG+ E++ P + GGE+EA ++L + K
Sbjct: 188 EDVEGLDTFIDPNHEDKYGIPTLEELGFD---PEDVPPPMWIGGETEAKQRLDRHLERKA 244
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ P A L + LSPYL+FGCLS R FY LT++YQ V+K T+ P+SL G
Sbjct: 245 WVANFERPRMSP-ASLMASPAGLSPYLRFGCLSPRTFYWKLTELYQKVRKTTNTPLSLHG 303
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FF+TVA FD M N IC QIPW + LL W TGYPWIDAIM QLR
Sbjct: 304 QLLWREFFFTVACNNRQFDHMVDNPICIQIPWDKNTALLNKWANGETGYPWIDAIMTQLR 363
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
GW+H LARH VACFLTRGD+++ WE+G VFD L+D+DW++N GNW+WLSCSSF+ Q
Sbjct: 364 LEGWIHPLARHAVACFLTRGDLWISWEEGMKVFDEYLLDADWSVNAGNWIWLSCSSFYQQ 423
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+Y+R +LP LK+ P +YI+EPWTAP+ +Q +AKCIIG+DYP
Sbjct: 424 FFHCYCPVKFGRRTDPNGDYVRKYLPFLKNFPSKYIFEPWTAPIEVQEKAKCIIGKDYPL 483
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V H AS ++ + Y
Sbjct: 484 PIVDHAEASHRNIERMRKVY 503
>gi|432862559|ref|XP_004069915.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 562
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/449 (45%), Positives = 277/449 (61%), Gaps = 37/449 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP-----L 57
++ AS A +EV +SHTL++ II+ NGG PPLTY+ F L + P L
Sbjct: 113 IQKLASEAAVEVVVRISHTLYDLDRIIELNGGPPPLTYKRFQALINRMDAVELPAERITL 172
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
S + PV + + + V ++EELG++ G + + GGE+EAL +L + K W
Sbjct: 173 ETMQSCVTPVSE-NHDDKFGVLSLEELGFETEGLPT-AVWPGGETEALLRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VAN+E+P+ + ++ L T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANYERPRMNANSLLATPTG-LSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN +C QIPW + E LA W E RTG+ WIDAIM QLR+
Sbjct: 290 LLWREFFYTTATNNPCFDKMEGNPVCVQIPWDRNPEALAKWAEGRTGFAWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGVKVFEELLLDADWSVNAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +Q A+CIIG YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEEVQKAARCIIGVHYPKP 469
Query: 358 VVSHDSASK-------------ECKRKLGEAYAL----------NQKLNGQVSE------ 388
+V H AS+ C R LG ++ Q+ + +V E
Sbjct: 470 MVHHAEASRINIERMKQIYQQLSCYRGLGLLASIPTNPSSDADEGQRGSSEVPEGASRSG 529
Query: 389 DGLKNLRRKFEGEENQESGRRQKQKTLTG 417
G +R+ E + S R KQ L G
Sbjct: 530 GGPSTQKRRHEDAPSASSSRSLKQSKLGG 558
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/396 (47%), Positives = 258/396 (65%), Gaps = 11/396 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ A G++ ++ VSHTL++ I++ NGG PPLTY+ FL + G+P V
Sbjct: 114 IQTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEP--EKPARDV 171
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
S+ V ++ V V L + G E + GGES AL++L + + WVA
Sbjct: 172 SIEDFQRC--VTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVA 229
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
NF KP+ P++ L P+TT LSPYL GCLS R FY L +Y K H+ PPVSL GQ+L
Sbjct: 230 NFSKPRTIPNSLL-PSTTGLSPYLSLGCLSVRTFYHRLNCIYAQSKNHSLPPVSLQGQVL 288
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+FFYTVA TPNF +M+GN IC QI W +D E L WR A+TG+PWIDAIM QL + G
Sbjct: 289 WREFFYTVASATPNFTKMEGNSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLLQEG 348
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+HHLARH VACFLTRGD+++ WE+G VF+ L+D+D+++N GNW+WLS S+FF++Y R
Sbjct: 349 WIHHLARHAVACFLTRGDLWISWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHKYTR 408
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
I+ PV FG++ DP G Y+R +LPVLK+ P +YIYEPW AP +Q A CIIG+DYP P+V
Sbjct: 409 IFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIV 468
Query: 360 SHDSASK---ECKRKLGEAYALNQKLNGQVSEDGLK 392
SH AS+ E R++ +L V++D ++
Sbjct: 469 SHIEASQRNLELMRQVRTEQQTTAELTRDVADDPME 504
>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
Length = 531
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/384 (48%), Positives = 258/384 (67%), Gaps = 10/384 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV SHTL+N II+ NG KPPLTY+ F + + P+ +S
Sbjct: 75 AKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQME 134
Query: 67 VGDVGYFE----ISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
V E + VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN
Sbjct: 135 TCKVDIQENHDDVYGVPSLEELGFPTDG---LAPAVWQGGETEALARLDKHLERKAWVAN 191
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQLLW
Sbjct: 192 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLW 250
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 251 REFFYTAATNNPKFDRMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 310
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 311 IHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHC 370
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG++ DP+G+Y++ +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+
Sbjct: 371 YCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVN 430
Query: 361 HDSASKECKRKLGEAYALNQKLNG 384
H S+ ++ + Y + G
Sbjct: 431 HAETSRLNIERMKQIYQQLSRYRG 454
>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
gi|81867613|sp|Q923I8.1|CRY2_RAT RecName: Full=Cryptochrome-2
gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
Length = 594
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F L +S
Sbjct: 131 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAL------------ISRM 178
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 179 ELPKKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 235
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 236 LVRLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYRKV 294
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 295 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 354
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 355 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 414
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q
Sbjct: 415 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQK 474
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
A CIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 475 AANCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 514
>gi|344280774|ref|XP_003412157.1| PREDICTED: cryptochrome-2 [Loxodonta africana]
Length = 593
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/400 (48%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 179
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ G L P ++GGE+EA
Sbjct: 180 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEA 236
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ V
Sbjct: 237 LARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKV 295
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 355
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 356 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 415
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ
Sbjct: 416 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQK 475
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 476 AAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 515
>gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens]
Length = 461
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/384 (49%), Positives = 257/384 (66%), Gaps = 10/384 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV----SLS 62
A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ + +
Sbjct: 4 AKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQME 63
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
S + E VP++EELG+ G L P ++GGE+EAL +L + + K WVAN
Sbjct: 64 SCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKAWVAN 120
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL GQLLW
Sbjct: 121 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLW 179
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 180 REFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 239
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSC +FF Q+
Sbjct: 240 IHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCGAFFQQFFHC 299
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP P+V+
Sbjct: 300 YCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVN 359
Query: 361 HDSASKECKRKLGEAYALNQKLNG 384
H S+ ++ + Y + G
Sbjct: 360 HAETSRLNIERMKQIYQQLSRYRG 383
>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
Length = 569
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/388 (49%), Positives = 260/388 (67%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP-LPVSL 61
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F L + P + VS
Sbjct: 108 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSS 167
Query: 62 SSLPPVG---DVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
S + + + VP++EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 168 SRMESCRAEIQKNHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKA 224
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL G
Sbjct: 225 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFG 283
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDR++GN IC QIPW + E LA W E +TG+PWIDAIM QLR
Sbjct: 284 QLLWREFFYTAATNNPRFDRVEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 343
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 344 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 403
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q AKCIIG DYP
Sbjct: 404 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPR 463
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 464 PIVNHAETSRLNIERMKQIYQQLSRYRG 491
>gi|390339199|ref|XP_788938.2| PREDICTED: cryptochrome-2-like [Strongylocentrotus purpuratus]
Length = 524
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/419 (47%), Positives = 268/419 (63%), Gaps = 19/419 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL---AGQPLWAS-SPL 57
+V + A +EV + VSHTL++ I+ N KPP+TYQ + L G P PL
Sbjct: 113 EVIELAKKNDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPL 172
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
+ + + + VP++E+LG G L P + GGE+E L+++ ++ K
Sbjct: 173 MANFTGVATPVKPDHDNEYGVPSLEDLGLDLEG---LGPRLYPGGETEGLQRMDLHLARK 229
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WV FEKPK P++ L+P+TTVLSPYLK+GCLS R FY + +VY T PPVSL+
Sbjct: 230 SWVCGFEKPKTSPNS-LEPSTTVLSPYLKWGCLSPRKFYYAIKEVYAQQTNCTKPPVSLM 288
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+FFYTVA GTPNF +M+ N IC Q+PW + E LAAW+E RTGYP+IDAIM QL
Sbjct: 289 GQLIWREFFYTVAAGTPNFHQMEENPICIQVPWDENPEFLAAWKEGRTGYPYIDAIMTQL 348
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R GW+HHLARH ACFLTRGD++ W KG++VFD L+D+D+++N NW+WLS S+FF+
Sbjct: 349 RTEGWIHHLARHSAACFLTRGDLWQSWVKGQEVFDEWLLDADYSLNAANWMWLSSSAFFH 408
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV FGKK D G YIR ++P L +P EYIYEPWTAP ++Q A CIIGRDYP
Sbjct: 409 QYYRVYSPVVFGKKTDKTGEYIRKYIPALNKLPAEYIYEPWTAPRSVQEAAGCIIGRDYP 468
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKT 414
P+V H SK ++ +A A + G K +R E + +G++ ++ T
Sbjct: 469 RPIVDHSIVSKRNIGRMKDARA---------CQPGKKAEKRPAEPSKQDNNGKKVRKIT 518
>gi|118572251|sp|Q8QG60.2|CRY2_CHICK RecName: Full=Cryptochrome-2
Length = 582
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/384 (48%), Positives = 258/384 (67%), Gaps = 10/384 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV SHTL+N II+ NG KPPLTY+ F + + P+ +S
Sbjct: 126 AKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQME 185
Query: 67 VGDVGYFE----ISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
V E + VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN
Sbjct: 186 TCKVDIQENHDDVYGVPSLEELGFPTDG---LAPAVWQGGETEALARLDKHLERKAWVAN 242
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQLLW
Sbjct: 243 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 302 REFFYTAATNNPKFDRMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 362 IHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHC 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG++ DP+G+Y++ +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+
Sbjct: 422 YCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVN 481
Query: 361 HDSASKECKRKLGEAYALNQKLNG 384
H S+ ++ + Y + G
Sbjct: 482 HAETSRLNIERMKQIYQQLSRYRG 505
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/418 (45%), Positives = 261/418 (62%), Gaps = 8/418 (1%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ G EV S + H+L+N I++ NGG PPLTY+ FL L G P L
Sbjct: 114 IRALGEELGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLGDPEMPIRNLTA 173
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE-WV 118
++ E VP +L E +SP+RGGESE L++L + ++D+ WV
Sbjct: 174 EDFQRCSPPELCLAECYRVPLPTDLKIP---PESISPWRGGESEGLQRLEQHLADRSGWV 230
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
A+F KPK P++ L P+TT LSPY GCLS R F+ L+++Y K H+ PPVSL GQL
Sbjct: 231 ASFTKPKTVPNSLL-PSTTGLSPYFSMGCLSVRSFFYRLSNIYAQAKHHSLPPVSLQGQL 289
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYTVA TPNF +M GN IC QI W D E L W+ A+TG+PWIDAIM QLR+
Sbjct: 290 LWREFFYTVASATPNFTKMAGNPICLQIRWYEDAERLHRWKTAQTGFPWIDAIMTQLRQE 349
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH ACFLTRGD+++ WE+G VF+ LL+D+D++IN GNW+WLS S+FF+ Y
Sbjct: 350 GWIHHLARHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHHYT 409
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI+ PV FG++ DP G YIR +LP+LK+ P +YIYEPWTA Q +A CIIGRDYP P+
Sbjct: 410 RIFCPVRFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPM 469
Query: 359 VSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTLT 416
V H AS + + + + +D + K + + ++E+ + K +T
Sbjct: 470 VDHKEASDHNLQLMKQVREEQYRTAQLTRDDADDPMEMKLKRDHSEENLTKTKAARMT 527
>gi|348523572|ref|XP_003449297.1| PREDICTED: cryptochrome-2-like [Oreochromis niloticus]
Length = 672
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/377 (48%), Positives = 251/377 (66%), Gaps = 12/377 (3%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP-VSLSSL- 64
A G+E SHTL+N II+ N PPLT++ F + + PLP ++ +
Sbjct: 117 AQEFGVETIVRNSHTLYNLDRIIEMNNNSPPLTFKRFQTIVSRLELPRRPLPPITQQQMD 176
Query: 65 ---PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVA 119
+GD + ++ +P++EELG++ G L P +RGGES+AL +L + + K WV
Sbjct: 177 KCHTKIGD-NHDQLYSIPSLEELGFRTAG---LPPAVWRGGESQALDRLSKHLDKKVWVT 232
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
+ E P+ + + L + T LSPYL+FGCLS R Y L ++Y V+K SPP+SL GQLL
Sbjct: 233 SLEHPRVN-TCSLYASPTGLSPYLRFGCLSCRVLYYNLRELYMKVRKRCSPPLSLFGQLL 291
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+FFYT A PNFDRM GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ G
Sbjct: 292 WREFFYTAATNNPNFDRMDGNPICVQIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEG 351
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+HHLARH VACFLTRGD+++ WE G VF+ LL+D+DW++N G+W+WLSCS+FF Q+
Sbjct: 352 WIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCSAFFQQFFH 411
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
Y PV FG++ DP G+YIRH++P+LKD P YIYEPW AP ++Q A C++G DYP P++
Sbjct: 412 CYCPVGFGRRTDPTGDYIRHYIPILKDYPNRYIYEPWNAPESLQKAANCVVGVDYPKPMI 471
Query: 360 SHDSASKECKRKLGEAY 376
+H +S+ ++ + Y
Sbjct: 472 NHAESSRLNIERMKQVY 488
>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome-2, partial [Taeniopygia guttata]
Length = 540
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/384 (48%), Positives = 258/384 (67%), Gaps = 10/384 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV SHTL++ II+ NG KPPLTY+ F + + P+ +S
Sbjct: 84 AKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQME 143
Query: 67 VGDVGYFE----ISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
V E + VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN
Sbjct: 144 TCKVDIQENHDDVYGVPSLEELGFPTDG---LAPAVWQGGETEALARLDKHLERKAWVAN 200
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQLLW
Sbjct: 201 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLW 259
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 260 REFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 319
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 320 IHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHC 379
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG++ DP+G+Y++ +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+
Sbjct: 380 YCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVN 439
Query: 361 HDSASKECKRKLGEAYALNQKLNG 384
H S+ ++ + Y + G
Sbjct: 440 HAETSRLNIERMKQIYQQLSRYRG 463
>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
Length = 540
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/384 (48%), Positives = 258/384 (67%), Gaps = 10/384 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV SHTL++ II+ NG KPPLTY+ F + + P+ +S
Sbjct: 84 AKEAGVEVVVENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQME 143
Query: 67 VGDVGYFEISE----VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
V E + VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN
Sbjct: 144 TCKVDIQENHDDMYGVPSLEELGFPTDG---LAPAVWQGGETEALARLDKHLERKAWVAN 200
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQLLW
Sbjct: 201 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLW 259
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 260 REFFYTAATNNPKFDRMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 319
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 320 IHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHC 379
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG++ DP+G+Y++ +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+
Sbjct: 380 YCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVN 439
Query: 361 HDSASKECKRKLGEAYALNQKLNG 384
H S+ ++ + Y + G
Sbjct: 440 HAETSRLNIERMKQIYQQLSRYRG 463
>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
Length = 582
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/384 (48%), Positives = 259/384 (67%), Gaps = 10/384 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV SHTL++ II+ NG KPPLTY+ F + + P+ +S
Sbjct: 126 AKEAGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQME 185
Query: 67 VGDV----GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
V + ++ VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN
Sbjct: 186 TCKVDIQENHDDVYGVPSLEELGFPTDG---LAPAVWQGGETEALARLDKHLERKAWVAN 242
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQLLW
Sbjct: 243 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 302 REFFYTAATNNPKFDRMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 362 IHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHC 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG++ DP+G+Y++ +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+
Sbjct: 422 YCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVN 481
Query: 361 HDSASKECKRKLGEAYALNQKLNG 384
H S+ ++ + Y + G
Sbjct: 482 HAETSRLNIERMKQIYQQLSRYRG 505
>gi|302745160|gb|ADL62683.1| cryptochrome 3, partial [Phreatichthys andruzzii]
Length = 475
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/374 (47%), Positives = 251/374 (67%), Gaps = 5/374 (1%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV----SLS 62
A G++ +HTL+NP II+ N PPLT++ F + + PLP ++
Sbjct: 95 AQEYGVQTVVRNTHTLYNPDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMA 154
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+ E VP++EELG+K ++ ++GGE+EA+++L + + K WVANFE
Sbjct: 155 RCRTQISDNHDEHYGVPSLEELGFKT-QRDSSHVWKGGETEAMERLNKHLDRKGWVANFE 213
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+P+ + L + T LSPYL+FGCLS R FY L +++ +++ +SPP+SL GQLLWR+
Sbjct: 214 RPRIITAQSLFASPTGLSPYLRFGCLSCRVFYYNLRELFMKLRRRSSPPLSLFGQLLWRE 273
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFYT PNFDRM+GN IC QIPW ++ E LA W E RTG+PWIDAIM QLR+ GW+H
Sbjct: 274 FFYTAGTNNPNFDRMEGNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIH 333
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE G VF+ LL+D+DW++N G+W+WLSCS+FF Q+ Y
Sbjct: 334 HLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCSAFFQQFFHCYC 393
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG++ DP+G+YIR ++P LKD P YIYEPW AP ++Q A CI+G DYP P+++H
Sbjct: 394 PVGFGRRTDPSGDYIRRYIPKLKDYPNCYIYEPWNAPESVQKAANCIVGVDYPKPMINHA 453
Query: 363 SASKECKRKLGEAY 376
+S+ ++ + Y
Sbjct: 454 ESSRLNIERMKQVY 467
>gi|380254429|dbj|BAL72539.1| cryptochrome3 [Siganus guttatus]
Length = 507
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/375 (48%), Positives = 251/375 (66%), Gaps = 8/375 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL-PVSLSSL- 64
A G+E SHTL+N II+ N PPLT++ F + + PL P++ +
Sbjct: 117 AQEFGVETIVRNSHTLYNLDRIIEMNSNNPPLTFKRFQTIVRRLELPRRPLAPITQQQMD 176
Query: 65 ---PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
+ D + ++ +P++EELG++ G + +RGGESEAL +L + + K WVAN
Sbjct: 177 KCRTKIAD-NHDQLYSIPSLEELGFRTEGLPA-AVWRGGESEALDRLNKHLDKKVWVANL 234
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
E P+ + + L + T LSPYL+FGCLS R Y L ++Y + KH+SPP+SL GQLLWR
Sbjct: 235 EHPRVN-TCSLYASPTGLSPYLRFGCLSCRVLYYNLRELYMKLCKHSSPPLSLFGQLLWR 293
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+FFYT A PNFDRM+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ GW+
Sbjct: 294 EFFYTAATNNPNFDRMEGNPICVQIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HH+ARH VACFLTRGD+++ WE G VF+ LL+D+DW++N G+W+WLSCS+FF Q+ Y
Sbjct: 354 HHVARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCSAFFQQFFHCY 413
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
PV FG++ DP+G+YIR ++P+LKD P YIYEPW AP ++Q A C++G DYP P+++H
Sbjct: 414 CPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPESVQKAANCVVGVDYPKPMINH 473
Query: 362 DSASKECKRKLGEAY 376
S+ ++ + Y
Sbjct: 474 AEGSRLNIERMKQVY 488
>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
Length = 586
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/386 (48%), Positives = 263/386 (68%), Gaps = 14/386 (3%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF------LKLAGQPLWASSPLPVS 60
A AG+EV + SHTL++ II+ NG KPPLTY+ F + L +P+ + + +
Sbjct: 124 AKEAGVEVITENSHTLYDLDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASITHQQME 183
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWV 118
+ + D + E VP++EELG+ E L+P + GGE+EAL +L + + K WV
Sbjct: 184 MCKTE-IQD-NHDETYGVPSLEELGFP---TESLAPAVWLGGETEALTRLDKHLERKAWV 238
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
AN+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQL
Sbjct: 239 ANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQL 297
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+
Sbjct: 298 LWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 357
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD+++ WE G VFD LL+D+D+++N+G+W+WLSCS+FF Q+
Sbjct: 358 GWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNSGSWMWLSCSAFFQQFF 417
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
Y PV FG++ DP+G+Y+R +LP LK P YIYEPW AP ++Q AKCIIG DYP P+
Sbjct: 418 HCYCPVGFGRRTDPSGDYVRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPM 477
Query: 359 VSHDSASKECKRKLGEAYALNQKLNG 384
V+H S+ ++ + Y + G
Sbjct: 478 VNHAETSRLNIERMKQIYQQLSRYRG 503
>gi|355681092|gb|AER96734.1| cryptochrome 1 [Mustela putorius furo]
Length = 449
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 248/354 (70%), Gaps = 8/354 (2%)
Query: 28 IIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSL-----PPVGDVGYFEISEVPTVE 82
II+ NGG+PPLTY+ F L + P+ S + P+ D + E VP++E
Sbjct: 1 IIELNGGQPPLTYKRFQTLISKMEPLEMPVETITSEVIEKCTTPLSD-DHDEKYGVPSLE 59
Query: 83 ELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPY 142
ELG+ G + + GGE+EAL +L + K WVANFE+P+ + ++ L ++T LSPY
Sbjct: 60 ELGFDTDGLPS-AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLA-SSTGLSPY 117
Query: 143 LKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRI 202
L+FGCLS R FY LTD+Y+ VKK++SPP+SL GQLLWR+FFYT A P FD+M+GN I
Sbjct: 118 LRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPI 177
Query: 203 CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHW 262
C QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD+++ W
Sbjct: 178 CVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISW 237
Query: 263 EKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLP 322
E+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+ Y PV FG++ DPNG+YIR +LP
Sbjct: 238 EEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLP 297
Query: 323 VLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
VL+ P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 298 VLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIY 351
>gi|149635020|ref|XP_001507425.1| PREDICTED: cryptochrome-2 [Ornithorhynchus anatinus]
Length = 582
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/389 (48%), Positives = 259/389 (66%), Gaps = 12/389 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ S
Sbjct: 119 IVKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTS 178
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
+ D + + VP++EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 179 QQMEGCKAEIQD-NHDDTYGVPSLEELGFPTDG---LGPAVWQGGETEALARLDKHLERK 234
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL
Sbjct: 235 AWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLY 293
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QL
Sbjct: 294 GQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQL 353
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF
Sbjct: 354 RQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQ 413
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Q+ Y PV FG++ DP+G++IR +LP LK P YIYEPW AP ++Q AKC+IG DYP
Sbjct: 414 QFFHCYCPVGFGRRTDPSGDFIRRYLPKLKAFPSRYIYEPWNAPESVQKAAKCVIGVDYP 473
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 474 RPIVNHAETSRLNIERMKQIYQQLSRYRG 502
>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 530
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/382 (50%), Positives = 251/382 (65%), Gaps = 11/382 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-S 60
+V A+ G++V VSHTL++ II +N GK PLTY L P+P
Sbjct: 111 EVVRLAAEHGVQVIQKVSHTLYDTERIIVENSGKAPLTYTRLQTLVASLGPPKQPVPAPK 170
Query: 61 LSSL----PPVGDVGYFEISEVPTVEELGYK-GYGQEELSPFRGGESEALKKLRESISDK 115
L + PV + E P+ EELG L P GGE+EAL +L +
Sbjct: 171 LEDMKDCCTPVKEDHDLEYG-TPSYEELGQDPKTAGPHLYP--GGETEALARLDLHMKRT 227
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WV NF+KP+ P++ L P+TTVLSPY+KFGCLS R F+ L +VYQ +KH+ PPVSL
Sbjct: 228 SWVCNFKKPETHPNS-LTPSTTVLSPYVKFGCLSVRMFWWKLAEVYQG-RKHSDPPVSLH 285
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYT G PNFDRM+ N +C Q+ W N+ E L AWRE +TGYP+IDAIM QL
Sbjct: 286 GQLLWREFFYTAGAGIPNFDRMENNPVCVQVDWDNNQEYLRAWREGQTGYPFIDAIMTQL 345
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DW++N NW WLS S+FF+
Sbjct: 346 RTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAANWQWLSASAFFH 405
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Q+ R+YSPV+FGKK D NG YI+ +LP L+ +YIYEPW AP ++Q RA CIIG+DYP
Sbjct: 406 QFFRVYSPVTFGKKTDKNGEYIKKYLPFLRKFSNDYIYEPWKAPRSLQERAGCIIGQDYP 465
Query: 356 APVVSHDSASKECKRKLGEAYA 377
P+V H+ K ++ AYA
Sbjct: 466 KPIVEHEKVYKRNLERMKAAYA 487
>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
Length = 606
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/390 (48%), Positives = 262/390 (67%), Gaps = 14/390 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF------LKLAGQPLWASSP 56
+ A AG+EV + SHTL++ II NG KPPLTY+ F ++L +P+ A +
Sbjct: 145 IMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTS 204
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISD 114
+ S + D + + VP++EELG+ G L P ++GGE+EAL +L + +
Sbjct: 205 QQME-SCRAEIQD-NHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLER 259
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL
Sbjct: 260 KAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSL 318
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM Q
Sbjct: 319 FGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQ 378
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACF TRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF
Sbjct: 379 LRQEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFF 438
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ A+CIIG DY
Sbjct: 439 QQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDY 498
Query: 355 PAPVVSHDSASKECKRKLGEAYALNQKLNG 384
P P+V+H S+ ++ + Y + G
Sbjct: 499 PRPMVNHAETSRLNIERMKQIYQQLSRYRG 528
>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
Length = 591
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/390 (48%), Positives = 262/390 (67%), Gaps = 14/390 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF------LKLAGQPLWASSP 56
+ A AG+EV + SHTL++ II NG KPPLTY+ F ++L +P+ A +
Sbjct: 130 IMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTS 189
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISD 114
+ S + D + + VP++EELG+ G L P ++GGE+EAL +L + +
Sbjct: 190 QQME-SCRAEIQD-NHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLER 244
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL
Sbjct: 245 KAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSL 303
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM Q
Sbjct: 304 FGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQ 363
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACF TRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF
Sbjct: 364 LRQEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFF 423
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ A+CIIG DY
Sbjct: 424 QQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDY 483
Query: 355 PAPVVSHDSASKECKRKLGEAYALNQKLNG 384
P P+V+H S+ ++ + Y + G
Sbjct: 484 PRPMVNHAETSRLNIERMKQIYQQLSRYRG 513
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae]
Length = 586
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/382 (50%), Positives = 249/382 (65%), Gaps = 15/382 (3%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GI V + VSHTL+ +II+ NGGK PLTY F + P P + P +
Sbjct: 126 GISVITRVSHTLYRLENIIENNGGKAPLTYHQFQTVIAS---MGPPPPAEPNISPKFMNG 182
Query: 71 GYFEISE-------VPTVEELGYKGYGQEELSP-FRGGESEALKKLRESISDKEWVANFE 122
Y I + VPT+EELG+ G L P ++GGE EAL +L + K WVA+F
Sbjct: 183 AYTPIGDDHDDKYGVPTLEELGFDIEGL--LPPVWQGGEPEALARLERHLERKAWVASFG 240
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+PK P + L + T LSPYL+FGCLS+R FY LTD+Y+ +KK PP+SL GQLLWR+
Sbjct: 241 RPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLTDLYEKIKK-ACPPLSLHGQLLWRE 298
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFY A PNFD+M GN IC QIPW + E LA W +TG+PWIDAIM QLR+ GW+H
Sbjct: 299 FFYCAATRNPNFDKMMGNPICVQIPWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIH 358
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSC SFF Q+ Y
Sbjct: 359 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCPSFFQQFFHCYC 418
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG+K DPNG+YIR +LPVLK+ P YI+EPW AP ++ AKCIIG++Y P+V+H
Sbjct: 419 PVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVPKAAKCIIGKEYSLPMVNHA 478
Query: 363 SASKECKRKLGEAYALNQKLNG 384
AS+ ++ + Y K G
Sbjct: 479 VASRINIERMKQVYQQLSKYRG 500
>gi|422295899|gb|EKU23198.1| cryptochrome [Nannochloropsis gaditana CCMP526]
Length = 560
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/406 (49%), Positives = 255/406 (62%), Gaps = 32/406 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKP-PLTYQSFLKL-AGQPLWASSPLPVS 60
V + A+ + V + SHTL +P + + GK P YQSF+KL A A V
Sbjct: 127 VCELAAKHQVHVQTFPSHTLHDPEAYVARLQGKDVPTVYQSFVKLFASMGPVAPVASTVD 186
Query: 61 LSSLPPV-----------------GDVGYFEISE---------VPTVEELGYKGYGQEEL 94
LPP G G EI E VP + +GY L
Sbjct: 187 AKRLPPPAPEYLSGQDGKKAGQGNGHAGGEEIEEDRTRGDDFSVPDLSGIGYPETDAPTL 246
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
P GGE+ AL +++E +++ +++ FEKPK P+A L+P+TTVLSPYLK G LSSR FY
Sbjct: 247 YP--GGETAALARMQEHLANVKYIVTFEKPKTSPNA-LRPSTTVLSPYLKHGALSSRLFY 303
Query: 155 QCLTDVY-QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDE 213
L + Q+ HT PPVSLVGQLLWR+FFY TPNFD+M GN IC+QIPW + E
Sbjct: 304 HSLRSILAQHKGPHTQPPVSLVGQLLWREFFYLQGHATPNFDKMVGNPICRQIPWGKNAE 363
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
LL AW EARTGYP+IDA M QLR+ GW+HHLARH +ACFLTRGD++ WE+G VF++ L
Sbjct: 364 LLGAWEEARTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEKYL 423
Query: 274 IDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+D+DW++N GNWLWLS S+FF+QY R+YSPV+FG K D G YIR +LPVL+ MP +YIY
Sbjct: 424 LDADWSVNTGNWLWLSASAFFHQYFRVYSPVAFGAKTDKEGEYIRKYLPVLRKMPIKYIY 483
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALN 379
EPW AP +Q A C++GRDYP PVV H + SK+ K+ AY N
Sbjct: 484 EPWKAPKGVQETAGCVVGRDYPHPVVDHATVSKQLMGKMKAAYDAN 529
>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
Length = 506
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/392 (49%), Positives = 253/392 (64%), Gaps = 13/392 (3%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA---GQPLWASSPL 57
+ + GI V S SHTL+ II+KNGG PPLTY F + G P +
Sbjct: 119 LNIMAMCKELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIANIGPPPEPEETV 178
Query: 58 PVSL--SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESIS 113
+L S P+ D + VPT+EELG++ ++L P + GGESEAL +L +
Sbjct: 179 TANLLEGSQTPLSD-DHDNKYGVPTLEELGFE---TDKLKPTVWSGGESEALARLERHLE 234
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVA+F PK P + L + T LSPYL+FGCLS+R FY L ++Y+ +KK PP+S
Sbjct: 235 RKAWVASFGHPKMTPQSLLA-SQTGLSPYLRFGCLSTRLFYYQLVELYKKIKK-AMPPLS 292
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFY A PNFD+M N IC QIPW + + LA W +TG+PWIDAIM
Sbjct: 293 LHGQLLWREFFYCAATKNPNFDKMNENPICVQIPWDENAQALAKWANGQTGFPWIDAIMT 352
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+WLSCSSF
Sbjct: 353 QLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSF 412
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG+K DPNG+YIR +LP+LK+ P +YI+EPW AP T Q AKCIIG+D
Sbjct: 413 FQQFFHCYCPVRFGRKADPNGDYIRKYLPILKNFPTKYIHEPWLAPETEQRAAKCIIGKD 472
Query: 354 YPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
+P P+V+H SK ++ + Y K Q
Sbjct: 473 FPLPMVNHSIVSKINIERMKQVYRQLSKYRSQ 504
>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
Length = 501
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/386 (48%), Positives = 258/386 (66%), Gaps = 17/386 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS-- 60
++++ I V + HT+++ +++KN G PLTYQ FL L + + +S
Sbjct: 117 IEEFCEANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSD-VQVKDIIQISKG 175
Query: 61 LSSLPPVGDV---GYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESISDK 115
+S D GY ++P++EE G + ELS + GGESE LK+L ++ K
Sbjct: 176 VSDECKASDYDSQGY----DIPSLEEFGV---NESELSECKYPGGESEGLKRLDVYMAKK 228
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+WV NFEKPK P++ ++P+TTVLSPY+ GCLS++ FY L V +N KHT PPVSL+
Sbjct: 229 QWVCNFEKPKSSPNS-IEPSTTVLSPYISHGCLSAKLFYHKLKQV-ENGSKHTLPPVSLM 286
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+YT GT NFD+M GN +C QIPW +D L AW E +TGYP++DAIM QL
Sbjct: 287 GQLMWREFYYTAGSGTENFDKMVGNSVCTQIPWKKNDAHLKAWAEGKTGYPFVDAIMRQL 346
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
++ GW+HHLARH VACFLTRGD+++ WE+G VF+ L+D DW++N GNW+WLS S+FFY
Sbjct: 347 KQEGWIHHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYDWSLNAGNWMWLSASAFFY 406
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
+Y R+YSPV+FGKK D +G YIR ++P LK P E+IYEPW AP +Q A CIIG YP
Sbjct: 407 KYYRVYSPVAFGKKTDKDGLYIRKYVPELKKYPSEFIYEPWKAPKGVQKTAGCIIGEGYP 466
Query: 356 APVVSHDSASKECKRKLGEAYALNQK 381
+V HD K+ +K+ AY +N++
Sbjct: 467 NRIVDHDKVHKDNIQKMNAAYKVNKE 492
>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
Length = 570
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/378 (48%), Positives = 251/378 (66%), Gaps = 6/378 (1%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV SHTL++ +I+ NG PPLTY+ F + + P P
Sbjct: 117 IMKLAKEAGVEVIVENSHTLYDLDRVIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTR 176
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+ + + E VP++EELG+ + + + GGE+EAL +L + K WV
Sbjct: 177 QQMEACRAEIKRNHDETYGVPSLEELGFHSENKGH-AIWPGGETEALARLDRHLERKAWV 235
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
AN+E+P+ ++ L + T LSPYL+FGCLS R FY L ++YQ VKK++ PP+SL GQL
Sbjct: 236 ANYERPRMSANSLLA-SPTGLSPYLRFGCLSCRLFYYRLQELYQKVKKNSPPPLSLYGQL 294
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A P FD+M+GN IC QIPW + + LA W E +TG+PWIDAIM QLR+
Sbjct: 295 LWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKALAKWTEGKTGFPWIDAIMTQLRQE 354
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 355 GWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSAFFQQFF 414
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
Y PV FG++ DP+G+Y++ +LPVLK P YIYEPW+AP ++Q AKCIIG DYP P+
Sbjct: 415 HCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPI 474
Query: 359 VSHDSASKECKRKLGEAY 376
V+H AS+ ++ + Y
Sbjct: 475 VNHAEASRMNIERMKQTY 492
>gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 438
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/370 (51%), Positives = 245/370 (66%), Gaps = 19/370 (5%)
Query: 28 IIQKNGGKPPLTYQSFLKLA---GQPLWASSPLPVSLSS-LPPVGDVGYFEISEVPTVEE 83
I++ N G PPLTY+ FL++ G P L S L P+ + E VP E+
Sbjct: 47 IVELNRGTPPLTYKRFLQILTTLGDPEMPVEDLTAENSQKLCPLPEEDLDECYRVPLPED 106
Query: 84 LGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYL 143
LG +E LSP+RGGE+ L++L E + ++ W+A F KP+ P++ L P+TT LSPY
Sbjct: 107 LGI---SKEHLSPWRGGETTGLQRLEEHMKNQGWIAKFTKPRTIPNSLL-PSTTGLSPYF 162
Query: 144 KFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC 203
GCLS R F+ L+ +Y K H+ PPVSL GQLLWR+FFYTVA TPNF +M GN IC
Sbjct: 163 SLGCLSVRMFFYRLSKIYAQSKNHSLPPVSLQGQLLWREFFYTVASATPNFTKMVGNPIC 222
Query: 204 KQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWE 263
QI W D E L W+ A+TG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE
Sbjct: 223 LQIEWYEDAEKLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWE 282
Query: 264 KGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPV 323
+G VF+ LL+DSD++IN GNW+WLS S+FF+QY+RI+ PV FGK+ DP G+YIR +LPV
Sbjct: 283 EGMKVFEELLLDSDYSINAGNWMWLSASAFFHQYSRIFCPVRFGKRTDPEGHYIRKYLPV 342
Query: 324 LKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLN 383
LK+ P +YIYEPWTAP Q A CIIG++YP P+V+H S N +L
Sbjct: 343 LKNFPSKYIYEPWTAPAEAQREAGCIIGKEYPFPMVNHKEVSDN-----------NLQLM 391
Query: 384 GQVSEDGLKN 393
QV E+ K
Sbjct: 392 KQVREEQYKT 401
>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
Length = 486
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/379 (47%), Positives = 238/379 (62%), Gaps = 33/379 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ D A +EV + H L +P ++K GG
Sbjct: 115 INDLAKKHNVEVIAEAGHMLHDPESYLKKCGG---------------------------- 146
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+ D Y +VPT++E+GY ++ F GGE EALK+L I K W+A FE
Sbjct: 147 ASKDRQDKSY----DVPTLKEMGYSPIKAPQMVLFPGGEREALKRLEHFIKKKNWIATFE 202
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
KPK +P+A L P TT LSPY+K GCLS R F+ + VY K H++PP SL GQLL+R+
Sbjct: 203 KPKTNPAA-LDPDTTGLSPYMKMGCLSVRKFWYDVQKVYDEKKDHSTPPESLHGQLLFRE 261
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + NFD+MKGNRIC+QI W ++ L AW ++TGYPWIDA M QLR GWMH
Sbjct: 262 LFHLCGYAVKNFDKMKGNRICRQIDWDYSEKFLDAWENSKTGYPWIDACMAQLRHEGWMH 321
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD++ WE G +F++ L+D+DW +NN NW+WLSCSSFFYQY R+YS
Sbjct: 322 HLARHAVACFLTRGDLYQSWEHGARIFEKHLVDADWHLNNANWMWLSCSSFFYQYFRVYS 381
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
P+ FG+KYD G +IR +LPVLKDMPK+YIYEPW AP +Q +AKCIIG+DYP P+V H
Sbjct: 382 PIGFGQKYDKEGAFIRKYLPVLKDMPKKYIYEPWKAPKEVQQKAKCIIGKDYPEPIVDHS 441
Query: 363 SASKECKRKLGEAYALNQK 381
S+ K ++ Y +++
Sbjct: 442 DVSETNKDRMKACYDAHKR 460
>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
Length = 557
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/386 (47%), Positives = 254/386 (65%), Gaps = 6/386 (1%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV SHTL++ II+ NG PPLTY+ F + + P P
Sbjct: 111 IMKLAKEAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTR 170
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+ + + E VP+++ELG+ + S + GGE+EAL +L + K WV
Sbjct: 171 QQMEACRAEIKRNHDETYGVPSLDELGFHSEIKGP-SIWPGGETEALARLDRHLERKAWV 229
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
AN+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VKK++ PP+SL GQL
Sbjct: 230 ANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLKELYKKVKKNSPPPLSLYGQL 288
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A P FD+M+GN IC QIPW + + LA W E +TG+PWIDAIM QLR+
Sbjct: 289 LWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQE 348
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 349 GWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSAFFQQFF 408
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
Y PV FG++ DP+G+Y+R +LPVLK P YIYEPW+AP ++Q AKCIIG DYP P+
Sbjct: 409 HCYCPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPI 468
Query: 359 VSHDSASKECKRKLGEAYALNQKLNG 384
V+H AS+ ++ + Y + G
Sbjct: 469 VNHAEASRMNIERMKQTYQQLSRYRG 494
>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
Length = 543
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/386 (47%), Positives = 252/386 (65%), Gaps = 6/386 (1%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV SHTL++ II+ NG PPLTY+ F + + P+P
Sbjct: 118 IMKLAKEAGVEVIVESSHTLYDLDKIIELNGNSPPLTYKRFQAIVSRMELPRRPVPSITR 177
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+ + + VP++EELG+ + + GGE+EAL +L + K WV
Sbjct: 178 QQMEKCRAEIKSTHDDTYGVPSLEELGFP-RDNPGAAVWPGGETEALARLDRHLERKAWV 236
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
A++E+P+ + ++ L + T LSPYL+FGCLS R FY L ++YQ VKK++ PP+SL GQL
Sbjct: 237 AHYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLRELYQKVKKNSPPPLSLFGQL 295
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A P FD+M+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+
Sbjct: 296 LWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPEALAKWTEGKTGFPWIDAIMTQLRQE 355
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 356 GWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSAFFQQFF 415
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
Y PV FG++ DP+G+Y+R +LPVLK P YIYEPW AP ++Q AKCI+G DYP PV
Sbjct: 416 HCYCPVGFGRRTDPSGDYVRRYLPVLKGYPSRYIYEPWNAPESVQKEAKCIVGVDYPKPV 475
Query: 359 VSHDSASKECKRKLGEAYALNQKLNG 384
V+H AS+ ++ + Y + G
Sbjct: 476 VNHAEASRLNIERMKQTYQQLSRYRG 501
>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
Length = 501
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/386 (47%), Positives = 253/386 (65%), Gaps = 6/386 (1%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV SHTL++ II+ NG PPLTY+ F + + P P
Sbjct: 50 IMKLAKEAGVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSVTR 109
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+ + + E VP++EELG+ + + + GGE+EAL +L + K WV
Sbjct: 110 QQMEACRAEIKRNHDETYGVPSLEELGFHRENKGS-AIWPGGETEALARLDRHLERKAWV 168
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
AN+E+P+ + ++ L + T LSPYL+FGCLS + FY L ++Y+ VKK+ PP+SL GQL
Sbjct: 169 ANYERPRMNANSLLA-SPTGLSPYLRFGCLSCKLFYYRLQELYRKVKKNNPPPLSLFGQL 227
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A P FD+M+GN IC QIPW + + LA W E +TG+PWIDAIM QLR+
Sbjct: 228 LWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQE 287
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 288 GWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSAFFQQFF 347
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
Y PV FG++ DPNG++IR +LPVLK P YIYEPW+AP ++Q +AKCIIG DYP P+
Sbjct: 348 HCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGIDYPKPI 407
Query: 359 VSHDSASKECKRKLGEAYALNQKLNG 384
V+H AS ++ + Y + G
Sbjct: 408 VNHAEASSMNIERMKQTYQQLSRYRG 433
>gi|387015302|gb|AFJ49770.1| Cryptochrome-2-like [Crotalus adamanteus]
Length = 590
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/388 (47%), Positives = 257/388 (66%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG++V + SHTL++ II+ NG KPPLTY+ F + + P+ S
Sbjct: 127 IVKLAKEAGVKVTTENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMDLPKKPVSTITS 186
Query: 63 SLPPVGDV----GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ + E VP++EELG+ G L+P ++GGE+EAL +L + + K
Sbjct: 187 QQMEMCQTKIQENHDETYGVPSLEELGFFTEG---LAPAVWQGGETEALTRLDKHLERKA 243
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL G
Sbjct: 244 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYG 302
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR
Sbjct: 303 QLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 362
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH ACFLTRGD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 363 QEGWIHHLARHAAACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 422
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW A ++Q AKCIIG DYP
Sbjct: 423 FFHCYCPVGFGRRTDPSGDYIRRYLPQLKGFPSRYIYEPWNASESVQKAAKCIIGVDYPK 482
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 483 PMVNHAETSRLNIERMKQIYQQLSRYRG 510
>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
Length = 643
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/392 (48%), Positives = 258/392 (65%), Gaps = 15/392 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL-PVSL 61
+K A+ AG+EV S +SHTL++ II+ NGG PPLT++ F L +P+ +S
Sbjct: 113 IKKLATEAGVEVVSRISHTLYDLDKIIELNGGHPPLTFKHFQTLVDSMPPPDAPVEALSR 172
Query: 62 SSL----PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESIS-- 113
+S+ PV D + + VP +EELG+ G L+P + GGESEAL ++ +
Sbjct: 173 ASMGRCVTPVSD-NHRDKYGVPLLEELGFDTEG---LAPAVWPGGESEALTRIERQLGPD 228
Query: 114 -DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
W NFE + S L P+ LSPYL+FGCLS R FY L ++Y+ VK + SPP+
Sbjct: 229 LSTAWQVNFESTRKTASPLL-PSPLGLSPYLRFGCLSCRLFYSKLAELYKKVKTNGSPPI 287
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
SL +LLWR+FFYT A P FD+M GN IC +IPW + E LA W EA+TG+PWIDAIM
Sbjct: 288 SLYDKLLWREFFYTAATNNPRFDKMDGNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIM 347
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+WL SCSS
Sbjct: 348 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSS 407
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
FF Q+ Y PV FG+K DP G++IR +LPVLKDMP +YIY+PW AP+ +Q AKC++G
Sbjct: 408 FFQQFFHCYCPVGFGRKIDPKGDFIRRYLPVLKDMPDKYIYDPWNAPIEVQRAAKCVVGV 467
Query: 353 DYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
DYP P+V+H AS+ ++ + Y K G
Sbjct: 468 DYPKPMVNHAEASRLNIERMRQMYQQLSKYRG 499
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/382 (46%), Positives = 257/382 (67%), Gaps = 9/382 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQK-NGGKPPLTYQSFLKLAGQPLWASSPLPV- 59
KV G++ F HTL++ ++ K NG PP SFLK Q P P+
Sbjct: 162 KVLQRMKGLGVQCFVESGHTLYDLDMLVAKLNGNSPPTQMTSFLKFIEQ--IGPPPKPIE 219
Query: 60 SLSSLPPVGD--VGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKE 116
++ ++PP+ + IS+VP +EE+ GY+ + PF+GGES+AL++++++++ ++
Sbjct: 220 TVRNIPPLRKELLSSISISKVPEIEEIPGYELITEPTPCPFQGGESKALERMQQALNREQ 279
Query: 117 --WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
W+ F KP P + P+TTVLSPY+K G LS R F+ L V + T PPVSL
Sbjct: 280 GKWIVRFSKPHTSPVSLDPPSTTVLSPYIKCGALSVRLFFWELKRVEDSFSVKTKPPVSL 339
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+GQL WR+ FY + + P+FD+++GN +CK IPW + E AW +A+TGYP+IDA M Q
Sbjct: 340 IGQLYWREHFYLLGYTIPHFDQIQGNPLCKTIPWEHRQEWFQAWEQAQTGYPFIDAAMTQ 399
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L++WGW+HHL RH VACFLTRGD+++ WEKG++ F++ LID DW+IN NW+WLSCS+FF
Sbjct: 400 LKQWGWLHHLTRHVVACFLTRGDLWISWEKGKETFEKYLIDGDWSINAANWMWLSCSAFF 459
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+Y R+YSP++F KKYDP+GNYIR+FLPVL++MP +YIYEPW APL +Q CI+G+DY
Sbjct: 460 TRYFRVYSPIAFPKKYDPHGNYIRYFLPVLRNMPNKYIYEPWKAPLKVQKEVNCILGKDY 519
Query: 355 PAPVVSHDSASKECKRKLGEAY 376
P P+V H+ K +K+ + +
Sbjct: 520 PLPIVDHEEMKKRNIQKMIQVF 541
>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
Length = 570
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/385 (48%), Positives = 254/385 (65%), Gaps = 20/385 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV SHTL++ +I+ NG PPLTY+ F Q + + LP L+
Sbjct: 117 IMKLAKEAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRF-----QAIISRMELPRRLA 171
Query: 63 SLPPVG-----------DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
P V + E VP++EELG+ + + + GGE+EAL +L
Sbjct: 172 --PSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGP-AIWPGGETEALARLDRH 228
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
+ K WVAN+E+P+ ++ L + T LSPYL+FGCLS R FY L ++YQ VKK++ PP
Sbjct: 229 LERKAWVANYERPRMSANSLLA-SPTGLSPYLRFGCLSCRLFYYRLQELYQKVKKNSPPP 287
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
+SL GQLLWR+FFYT A P FD+M+GN IC QIPW + + LA W E +TG+PWIDAI
Sbjct: 288 LSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKALAKWTEGKTGFPWIDAI 347
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QLR+ GW+HHLARH VACFLTRGD++ WE G VFD LL+D+D+++N G+W+WLSCS
Sbjct: 348 MTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCS 407
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+FF Q+ Y PV FG++ DP+G+Y++ +LPVLK P YIYEPW+AP ++Q AKCIIG
Sbjct: 408 AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIG 467
Query: 352 RDYPAPVVSHDSASKECKRKLGEAY 376
DYP P+V+H AS+ ++ + Y
Sbjct: 468 IDYPKPIVNHAEASRMNIERMKQTY 492
>gi|432863953|ref|XP_004070204.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 667
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/378 (48%), Positives = 248/378 (65%), Gaps = 14/378 (3%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL----- 61
A G+E SHTL+N II+ N PPLT++ F + + PLP
Sbjct: 117 AQEFGVETVVRNSHTLYNLDRIIELNNNSPPLTFKRFQTIVSRLELPRRPLPAITQQQMD 176
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVA 119
S +GD + ++ +P++EELG++ E L P +RGGESEAL +L + + K WVA
Sbjct: 177 SCQRQIGD-NHDQLYSIPSLEELGFR---TERLPPAVWRGGESEALDRLSKHLDKKVWVA 232
Query: 120 NFEKPKGDP-SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
+ E + + S Y P T LSPYL+FGCLS R Y L ++Y ++K SPP+SL GQL
Sbjct: 233 SVEHTRVNKCSLYASP--TGLSPYLRFGCLSCRVLYYNLRELYMKLRKRCSPPLSLFGQL 290
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A PNFDRM+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 291 LWREFFYTAATNNPNFDRMEGNPICVQIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQE 350
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD+++ W G VF+ LL+D+ W++N G+W+WLSCS+FF Q+
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWVSGMKVFEELLLDAGWSVNAGSWMWLSCSAFFQQFF 410
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
Y PV FG++ DP+G+YIR ++P+LKD P YIYEPW AP ++Q A C++G DYP P+
Sbjct: 411 HCYCPVGFGRRTDPSGDYIRRYIPILKDFPNRYIYEPWNAPESVQKAANCVVGVDYPKPM 470
Query: 359 VSHDSASKECKRKLGEAY 376
V+H +S+ ++ + Y
Sbjct: 471 VNHAESSRLNIERMKQVY 488
>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
Length = 568
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/386 (47%), Positives = 252/386 (65%), Gaps = 6/386 (1%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A G+EV SHTL++ II+ NG PPLTY+ F + + P P
Sbjct: 117 IMKLAKEGGVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSVTR 176
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+ + + E VP++EELG+ + + + GGE+EAL +L + K WV
Sbjct: 177 QQMEACRAEIKRNHDETYGVPSLEELGFHRENKGS-AIWPGGETEALARLDRHLERKAWV 235
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
AN+E+P+ + ++ L + T LSPYL+FGCLS + FY L ++Y+ VKK+ PP+SL GQL
Sbjct: 236 ANYERPRMNANSLLA-SPTGLSPYLRFGCLSCKLFYYRLQELYRKVKKNNPPPLSLFGQL 294
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A P FD+M+GN IC QIPW + + LA W E +TG+PWIDAIM QLR+
Sbjct: 295 LWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQE 354
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRGD++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 355 GWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSAFFQQFF 414
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
Y PV FG++ DPNG++IR +LPVLK P YIYEPW+AP ++Q +AKCIIG DYP P+
Sbjct: 415 HCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGIDYPKPI 474
Query: 359 VSHDSASKECKRKLGEAYALNQKLNG 384
V+H AS ++ + Y + G
Sbjct: 475 VNHAEASSMNIERMKQTYQQLSRYRG 500
>gi|357624446|gb|EHJ75225.1| (6-4) photolyase [Danaus plexippus]
Length = 370
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/371 (49%), Positives = 252/371 (67%), Gaps = 17/371 (4%)
Query: 18 VSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS--LSSLPPVGDV---GY 72
+ HT+++ +++KN G PLTYQ FL L + + +S +S D GY
Sbjct: 1 MQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSD-VQVKDIIQISKGVSDECKASDYDSQGY 59
Query: 73 FEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESISDKEWVANFEKPKGDPSA 130
++P++EE G + ELS + GGESE LK+L ++ K+WV NFEKPK P++
Sbjct: 60 ----DIPSLEEFGV---NESELSECKYPGGESEGLKRLDVYMAKKQWVCNFEKPKSSPNS 112
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFG 190
++P+TTVLSPY+ GCLS++ FY L V +N KHT PPVSL+GQL+WR+F+YT G
Sbjct: 113 -IEPSTTVLSPYISHGCLSAKLFYHKLKQV-ENGSKHTLPPVSLMGQLMWREFYYTAGSG 170
Query: 191 TPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
T NFD+M GN +C QIPW +D L AW E +TGYP++DAIM QL++ GW+HHLARH VA
Sbjct: 171 TENFDKMVGNSVCTQIPWKKNDAHLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVA 230
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKY 310
CFLTRGD+++ WE+G VF+ L+D DW++N GNW+WLS S+FFY+Y R+YSPV+FGKK
Sbjct: 231 CFLTRGDLWISWEEGAKVFEDFLLDYDWSLNAGNWMWLSASAFFYKYYRVYSPVAFGKKT 290
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKR 370
D +G YIR ++P LK P E+IYEPW AP +Q A C+IG YP +V HD K+ +
Sbjct: 291 DKDGLYIRKYVPELKKYPSEFIYEPWKAPKGVQKTAGCVIGEGYPNRIVDHDKVHKDNIQ 350
Query: 371 KLGEAYALNQK 381
K+ AY +N++
Sbjct: 351 KMNSAYKVNKE 361
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti]
Length = 553
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/387 (46%), Positives = 257/387 (66%), Gaps = 12/387 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSPL 57
V++ A G+++ S T+++P I++ N G+PPLTYQ + LA +P+ +
Sbjct: 121 VEEQAKKHGVKIQIEKSLTIYDPDAILKMNAGRPPLTYQKYGSLASTLKIPEPVATPKEI 180
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
P + + P + ELG K +E+L F GGE+EAL++L + + K
Sbjct: 181 PSDCVPKQDSNERKRANCYDPPLLVELGVK---EEDLGECKFPGGETEALRRLEDHMKRK 237
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WV +FEKP P++ L+P+TTVLSPY+KFGCLS+R F + L V + +KH+ PPVSL+
Sbjct: 238 SWVCSFEKPNTSPNS-LEPSTTVLSPYVKFGCLSARLFMRELQTVIKG-QKHSQPPVSLI 295
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQL+WR+F+Y A PNFD+M GN IC +PW ++ E L AW RTGYP+IDAIM QL
Sbjct: 296 GQLMWREFYYCAAADEPNFDKMVGNSICLHVPWDSNKEFLEAWTHGRTGYPFIDAIMRQL 355
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ L+D+DWA+N GNW+WLS S+FF+
Sbjct: 356 RQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEFLLDADWALNAGNWMWLSASAFFH 415
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R+YSPV+FGKK DP G +I+ ++P L P IYEPW A + +Q + CIIG+DYP
Sbjct: 416 QYFRVYSPVAFGKKTDPEGKFIKKYVPELAKYPSGIIYEPWKASVDVQKKLGCIIGKDYP 475
Query: 356 APVVSHDSASKECKRKLGEAYALNQKL 382
+V H+ K+ +K+ EAY N+ +
Sbjct: 476 NRIVIHEEIHKKNIQKMTEAYRKNKAV 502
>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
Length = 639
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/452 (45%), Positives = 278/452 (61%), Gaps = 41/452 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A AG+EV +SHTL++ II+ NGG+ PLTY+ F Q L +S P
Sbjct: 113 IKKLACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRF-----QTLVSSMEPPDPPL 167
Query: 63 SLPPVGDVG--YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRES 111
S P G +G ISE VP +EELG+ G L+P + GGESEALK++
Sbjct: 168 SSPDRGMMGKCVTPISENHRDKYGVPLLEELGFDTEG---LAPAVWPGGESEALKRMERH 224
Query: 112 I---SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+ S W NFE+PK + S L + LSPYL+FGCLS R FY LT +Y+ VKK+
Sbjct: 225 LGPDSTVAWQENFERPKMNASP-LMASPLGLSPYLRFGCLSCRLFYCKLTQLYKKVKKNM 283
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
+P +SL ++LWR+FFYT A P FDRM+GN IC +IPW + E LA W EA+TG+PWI
Sbjct: 284 NPSISLYDKILWREFFYTAATNNPRFDRMEGNPICIRIPWDRNAEALAKWAEAKTGFPWI 343
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DAIM+QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+WL
Sbjct: 344 DAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCH 403
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
SCSSFF Q+ Y PV FG++ DPNG++IR +LPVL+D P +YIY+PW AP +Q AKC
Sbjct: 404 SCSSFFQQFFHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKC 463
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG---------QVSEDGLKNL----- 394
+IG DYP P+V+H AS+ ++ + Y + G ED N+
Sbjct: 464 VIGVDYPKPMVNHAEASRLNIERMRQIYQQLSRYRGLSLLATVPSNHIEDAAANVNRGAM 523
Query: 395 ----RRKFEGEENQESGRRQKQKTLTGWLKDH 422
RRK + + +G R++Q +G H
Sbjct: 524 APPTRRKTRNDASSYTGVRREQPGPSGAKHRH 555
>gi|410926431|ref|XP_003976682.1| PREDICTED: cryptochrome-2-like [Takifugu rubripes]
Length = 718
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/377 (48%), Positives = 244/377 (64%), Gaps = 12/377 (3%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP-VSLSSLP 65
A G+E SHTL+N II+ N PPLT++ F + + PLP V+ +
Sbjct: 117 AQQFGVETIVRNSHTLYNLDRIIEVNNNSPPLTFKRFQTIVSRLELPRRPLPTVTQHQIH 176
Query: 66 PVGDV---GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
G ++ +P++EELG++ G L P +RGGESEAL++L + + K WVAN
Sbjct: 177 KCGAKMADSQEQLYSIPSLEELGFRTEG---LPPAVWRGGESEALERLHKHLDKKVWVAN 233
Query: 121 FEKPK-GDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
E + S Y PA LSPYL+FGCLS R Y L ++Y ++K SPP SL GQLL
Sbjct: 234 LEHSRVSTCSLYASPAG--LSPYLRFGCLSCRVLYYNLRELYVKLRKGCSPPPSLFGQLL 291
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+FFYT A PNFDRM+GN IC QIPW + E LA W E TG+PWIDAIM QLR+ G
Sbjct: 292 WREFFYTAATNNPNFDRMEGNPICVQIPWDQNPEALAKWAEGHTGFPWIDAIMTQLRQEG 351
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+HH AR VACFLTRGD+++ WE G VF+ LL+D+DW++N G+W+WLSCS+FF Q+ +
Sbjct: 352 WIHHQARRAVACFLTRGDLWISWECGMKVFEELLLDADWSVNAGSWMWLSCSAFFQQFFK 411
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
Y PV FG++ DP+G+YIR ++P+LKD P YIYEPW AP +Q A C++G DYP P++
Sbjct: 412 CYCPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMI 471
Query: 360 SHDSASKECKRKLGEAY 376
+H S+ ++ + Y
Sbjct: 472 NHAEGSRLNIERMKQVY 488
>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
Length = 552
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 267/419 (63%), Gaps = 15/419 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA---GQPLWASSPLPV 59
++ A +G+EV SHTL++P II+ N G PLTY+ FL + G P + L V
Sbjct: 137 IRLLAQESGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCATLDV 196
Query: 60 SL---SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
L S P D + E VP+++ELG + + GGE+EAL +L + K
Sbjct: 197 HLLGGCSTPVSED--HEEKFGVPSLKELGLD-VAKLSTEIWHGGETEALIRLDRHLERKA 253
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
W+A+FEKPK P++ L P+ T LSPYL+FGCLS R FY L+++Y+ VK PP+SL G
Sbjct: 254 WIASFEKPKVTPNS-LFPSPTGLSPYLRFGCLSPRLFYHRLSELYRKVK-CKDPPISLYG 311
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FF+TVA PNFD+M N +C QIPW+ + E L W + +TG+PWIDAIM+QL+
Sbjct: 312 QLLWREFFFTVAANNPNFDQMDENPVCLQIPWTANPEWLKKWEQGQTGFPWIDAIMIQLK 371
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ G +HHLARH V CFLTRGD+++ WE+G VF+R L+D++W++N GNW+WLSCS+FF Q
Sbjct: 372 QEGXIHHLARHAVGCFLTRGDLWISWEEGMKVFERWLLDAEWSLNAGNWMWLSCSAFFQQ 431
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ PV FG+K DPNG+Y+R +LPVLK P +YI+ PWTAP +Q A+CIIG+DYP
Sbjct: 432 FFNCICPVGFGRKLDPNGDYVRKYLPVLKGFPAKYIHAPWTAPENVQRAARCIIGKDYPR 491
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
P+V H S K+ + K + E + K +G +++++ +Q+ L
Sbjct: 492 PIVDHHKVSTANLEKMRNVF----KALLRYKESTVVATSEKSDGSKDKQAKLKQQMLNL 546
>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
Length = 512
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/383 (48%), Positives = 251/383 (65%), Gaps = 14/383 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+K S GI V + SHTL+ II NGGK PLTY F KL L P ++
Sbjct: 113 NIKVMCSEMGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKL----LECIDPPERAV 168
Query: 62 SSLPP--VGDV------GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
S+ +G+ + EI VPT+EELG+K + GGE+EAL +L+ +
Sbjct: 169 PSIDKEFLGNAFTPIKYDHDEIFGVPTLEELGFKEINNITRHVWVGGETEALIRLQCHLE 228
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K ++A+F KPK P + L + T L+PYLKFGCLS+R F+ L ++Y+ ++K + PP+S
Sbjct: 229 RKAFIASFGKPKMTPQS-LVASPTGLAPYLKFGCLSTRLFFSELNELYKKIRK-SQPPLS 286
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWRDFFY + PNFDRM GN IC QIPW + L+ W +TGYPWIDAIM+
Sbjct: 287 LHGQLLWRDFFYCASTNNPNFDRMVGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMI 346
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+H +ARH VACFLTRGD+++ WE+G VFD LL+D+DW++N G W+W SCSSF
Sbjct: 347 QLRQEGWIHCIARHAVACFLTRGDLWLSWEEGMKVFDELLLDADWSVNAGYWMWYSCSSF 406
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
+ ++ Y PV FG+K DPNG+YIR ++P L +MP +YI+EPW AP +IQ A CIIG D
Sbjct: 407 YQEFIHCYCPVRFGRKVDPNGDYIRRYIPALNNMPNQYIHEPWLAPESIQFSANCIIGID 466
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H +ASK ++ AY
Sbjct: 467 YPLPIVNHINASKINLERMKLAY 489
>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
Length = 531
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 181/385 (47%), Positives = 247/385 (64%), Gaps = 17/385 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP-VSL 61
+ A AG+EV SHTL++ II+ NG PPLTY+ F + + P P V+
Sbjct: 91 IMKLAKEAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTR 150
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVA 119
+ + G+ E P + GGE+EAL +L + K WVA
Sbjct: 151 QQMEGCNSLCI-------------ASGFHSEIKGPSIWPGGETEALARLDRHLERKAWVA 197
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
N+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VKK++ PP+SL GQLL
Sbjct: 198 NYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLKELYKKVKKNSPPPLSLYGQLL 256
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+FFYT A P FD+M+GN IC QIPW + + LA W E +TG+PWIDAIM QLR+ G
Sbjct: 257 WREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEG 316
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+HHLARH VACFLTRGD++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 317 WIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSAFFQQFFH 376
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
Y PV FG++ DP+G+Y+R +LPVLK P YIYEPW+AP ++Q AKCIIG DYP P+V
Sbjct: 377 CYCPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIV 436
Query: 360 SHDSASKECKRKLGEAYALNQKLNG 384
+H AS+ ++ + Y + G
Sbjct: 437 NHAEASRMNIERMKQTYQQLSRYRG 461
>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
Length = 542
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/394 (47%), Positives = 250/394 (63%), Gaps = 10/394 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPAD---IIQKNGGKPPLTYQSFLKLAGQPLWASSPLP 58
+V A AG++V + TL N + ++ K G TY +FLKL P
Sbjct: 117 EVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAP 176
Query: 59 VSLSSLPPVG---DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
LP G D ++ +P++ +LG + + FRGGE EAL +L ++ +
Sbjct: 177 DISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKA--LKFRGGEREALARLERVMARE 234
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+W++ FEKPK P++ ++P+TTVLS Y+ GCLS+R F+ L VY K + PPVSL
Sbjct: 235 DWISKFEKPKTSPNS-IEPSTTVLSMYISHGCLSTRRFWHALCKVYTK-KGGSKPPVSLK 292
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLW++F Y + P+FD+M GN + +QIPW D+E L AW+EARTG+PWIDA M QL
Sbjct: 293 GQLLWKEFNYFSGYSIPSFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQL 352
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
+ GW+HHLARH VACFLTRGD++ WE G VFD LL+D+DW+INN NW WLSCS+FFY
Sbjct: 353 KDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFY 412
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
QY R YSP++FGKK D NG+YI+ +LP L+ P +YIYEPWTAPL +Q CIIG+DYP
Sbjct: 413 QYFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYP 472
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSED 389
P+V H SK K+ +AY +Q+ S D
Sbjct: 473 KPIVDHADTSKANMAKMNDAYDAHQEAQAAESHD 506
>gi|412988942|emb|CCO15533.1| predicted protein [Bathycoccus prasinos]
Length = 574
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 200/432 (46%), Positives = 264/432 (61%), Gaps = 47/432 (10%)
Query: 12 IEVFSPVSHTLFNPADIIQKNGGK--PPLTYQSFLKLAGQ----PLWASSPLPVSLSSLP 65
++V + SHTL++ ++ K K PP T +F K+ P P SL +P
Sbjct: 144 VDVNTYASHTLYDQEFLLSKASAKGIPPSTMGAFQKVLANVGEPPSPVPEPPKNSLRVIP 203
Query: 66 PVGDVGYFEI---SEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK----EWV 118
GD E + +PT+E+LGYK +GGE+E L+++R ++ ++V
Sbjct: 204 NAGDALSKEFKYANGIPTLEDLGYKAKSLS-FKGGKGGETEGLRRMRGALCRGGDGYKYV 262
Query: 119 ANFEKPKGDP-------------------------------SAYLKPATTVLSPYLKFGC 147
F+KP+ P + L P+TT LSP+LKFG
Sbjct: 263 QEFDKPQSSPCQLFAKEKGSGKALNPFEMAKKASSSSSPKEESLLWPSTTALSPHLKFGT 322
Query: 148 LSSRYFYQCLTDVYQN--VKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQ 205
+S R FY L D+ +N KHT+PP SL+GQ+LWR+F+Y A GTPN+D+M GNRICKQ
Sbjct: 323 VSVRQFYFELQDILKNELKGKHTNPPTSLMGQILWREFYYVNACGTPNYDKMVGNRICKQ 382
Query: 206 IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
I W +D E LA W A+TG+PWIDA M QL++ GWMHHLARH VACFLTRGD+F+ WE+G
Sbjct: 383 IKWKHDPENLAKWENAQTGFPWIDAAMTQLKEEGWMHHLARHAVACFLTRGDLFISWEEG 442
Query: 266 RDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
VFDR L+D+DWA+NNGNW+WLS SSFFYQY R+Y P SF KKYD G Y++HFLPVLK
Sbjct: 443 ARVFDRDLVDADWALNNGNWMWLSASSFFYQYFRVYGPHSFAKKYDKEGAYVKHFLPVLK 502
Query: 326 DMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
DMP +Y+YEPWTAPL +Q +A CI+G DYP P+V H ASK+C + EAYA ++
Sbjct: 503 DMPSKYVYEPWTAPLEVQKKAGCIVGVDYPKPMVDHAIASKQCMAWMNEAYAAGKEKKSG 562
Query: 386 VSEDGLKNLRRK 397
E K + K
Sbjct: 563 GEEKSNKKAKTK 574
>gi|344253241|gb|EGW09345.1| Cryptochrome-1 [Cricetulus griseus]
Length = 428
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 169/299 (56%), Positives = 222/299 (74%), Gaps = 2/299 (0%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
VP++EELG+ G + + GGE+EAL +L + K WVANFE+P+ + ++ L + T
Sbjct: 33 VPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLA-SPT 90
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQLLWR+FFYT A P FD+M
Sbjct: 91 GLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKM 150
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD
Sbjct: 151 EGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGD 210
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+ Y PV FG++ DPNG+YI
Sbjct: 211 LWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYI 270
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
R +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 271 RRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIY 329
>gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens]
Length = 427
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 169/299 (56%), Positives = 222/299 (74%), Gaps = 2/299 (0%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
VP++EELG+ G + + GGE+EAL +L + K WVANFE+P+ + ++ L + T
Sbjct: 33 VPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLA-SPT 90
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQLLWR+FFYT A P FD+M
Sbjct: 91 GLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKM 150
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD
Sbjct: 151 EGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGD 210
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+ Y PV FG++ DPNG+YI
Sbjct: 211 LWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYI 270
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
R +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 271 RRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIY 329
>gi|395543767|ref|XP_003775403.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Sarcophilus
harrisii]
Length = 597
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/370 (48%), Positives = 247/370 (66%), Gaps = 14/370 (3%)
Query: 23 FNPADIIQKNGGKPPLTYQSF------LKLAGQPLWASSPLPVSLSSLPPVGDVGYFEIS 76
F II+ NG KPPLTY+ F ++L +P+ + + D + E
Sbjct: 156 FGIRRIIELNGQKPPLTYKRFQAIISRMELPRKPVSGVTRQQMERCQAEIRED--HDEAY 213
Query: 77 EVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKP 134
VP++EELG+ G L P ++GGE+EAL +L + + K WVAN+E+P+ + ++ L
Sbjct: 214 GVPSLEELGFPTDG---LGPAVWQGGETEALARLDKHLERKAWVANYERPRMNATSLLA- 269
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
+ T LSPYL+FGCLS R FY L ++Y+ VK++ +PP+SL GQLLWR+FFYT A P F
Sbjct: 270 SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNNTPPLSLYGQLLWREFFYTAATNNPKF 329
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
DRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW+HHLARH VACFLT
Sbjct: 330 DRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 389
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNG 314
RGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+ Y PV FG++ DP+G
Sbjct: 390 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSG 449
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGE 374
+Y+R +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+H S+ ++ +
Sbjct: 450 DYVRRYLPQLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 509
Query: 375 AYALNQKLNG 384
Y + G
Sbjct: 510 IYQQLSRYRG 519
>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
Length = 638
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 184/383 (48%), Positives = 250/383 (65%), Gaps = 14/383 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-----PLWASSPL 57
+K A AG+EV +SHTL++ II+ NGG+ PLTY+ F L P AS
Sbjct: 113 IKKLACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLASPDR 172
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESI--S 113
+ + P+ + + + VP +EELG+ G L+P + GGESEALK++ +
Sbjct: 173 GMMGKCVTPISE-NHRDKYGVPLLEELGFDTEG---LAPAVWPGGESEALKRMERHLGPD 228
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
W NFE+PK + S L + LSPYL+FGCLS R FY + VKK+ +P +S
Sbjct: 229 STAWQENFERPKMNASP-LMASPLGLSPYLRFGCLSCRLFYCNSLSSTKKVKKNMNPSIS 287
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L ++LWR+FFYT A P FDRM+GN IC +IPW + E LA W EA+TG+PWIDAIM+
Sbjct: 288 LYDKILWREFFYTAATNNPRFDRMEGNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMM 347
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+WL SCSSF
Sbjct: 348 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSF 407
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG++IR +LPVL+D P +YIY+PW AP +Q AKC IG D
Sbjct: 408 FQQFFHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCAIGVD 467
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 468 YPKPMVNHAEASRLNIERMRQIY 490
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
Length = 828
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 180/382 (47%), Positives = 240/382 (62%), Gaps = 35/382 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ + I+V S VSHTL+ II+KN G+ PLTY F + + P P
Sbjct: 158 ISEMCKELNIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIAS--MDAPPQPEPAI 215
Query: 63 SLPPVGDVGYFEISE------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISD 114
+L +G + + VPT+EELG++ G L P + GGE+EAL +L +
Sbjct: 216 TLAAIGRAVTPQCDDHDDKYGVPTLEELGFETEG---LKPPIWVGGETEALARLERHLGT 272
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ T LSPYL+FGCLS+R FY LTD+Y+ +KK PP+SL
Sbjct: 273 Q---------------------TGLSPYLRFGCLSTRLFYYQLTDLYKKIKK-AYPPLSL 310
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQL WR+FFY A PNFD+M GN IC QIPW + E LA W +TG+PWIDAIM Q
Sbjct: 311 HGQLFWREFFYCAATKNPNFDKMAGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQ 370
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSFF
Sbjct: 371 LREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF 430
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Q+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW AP ++Q A+CIIG++Y
Sbjct: 431 QQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCIIGKNY 490
Query: 355 PAPVVSHDSASKECKRKLGEAY 376
P P+V+H AS+ ++ + Y
Sbjct: 491 PLPMVNHAIASRANMERIKQVY 512
>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
Length = 512
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/380 (47%), Positives = 248/380 (65%), Gaps = 8/380 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLP 58
+K S GI V + SHTL+ II NGGK PLTY Q+ L+ P A +
Sbjct: 113 NIKVMCSELGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSID 172
Query: 59 VSL--SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
++ P + +I VPTVEELG++ + GGE+EAL +L+ + K
Sbjct: 173 KEFLGNAFTPT-KYDHDKIFGVPTVEELGFEEINNIARHVWVGGETEALIRLQCHLERKA 231
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
++A+F KPK P + L + T L+PYLKFGCLS+R ++ L ++Y+ ++K + PP+SL G
Sbjct: 232 FIASFGKPKMTPQSLLA-SPTGLAPYLKFGCLSTRLYFSELNELYKKIRK-SQPPLSLHG 289
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWRDFFY + PNFDRM GN IC QIPW + L+ W +TGYPWIDAIM+QLR
Sbjct: 290 QLLWRDFFYCASTNNPNFDRMVGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLR 349
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+H +ARH VACFLT GD+++ WE+G VFD LL+D+DW++N G W+W SCSSF+ +
Sbjct: 350 QEGWIHCIARHAVACFLTWGDLWLSWEEGMKVFDELLLDADWSVNAGYWMWYSCSSFYKE 409
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG+K DPNG+YIR ++P L +MP +YI+EPW AP +IQ A CIIG DYP
Sbjct: 410 FIHCYCPVRFGRKVDPNGDYIRRYIPALNNMPNKYIHEPWLAPESIQITANCIIGIDYPL 469
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H +ASK ++ AY
Sbjct: 470 PIVNHINASKINIERMKLAY 489
>gi|395538375|ref|XP_003771158.1| PREDICTED: cryptochrome-1 [Sarcophilus harrisii]
Length = 671
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 179/374 (47%), Positives = 239/374 (63%), Gaps = 46/374 (12%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL+ D+ + G L +
Sbjct: 219 IKKLASEAGVEVIVRISHTLY---DLDKPEAGLQKLVW---------------------- 253
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
D F+ +P+ + + GGE+EAL +L + K WVANFE
Sbjct: 254 ------DEEGFDTDGLPS--------------AVWPGGETEALTRLERHLERKAWVANFE 293
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQLLWR+
Sbjct: 294 RPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWRE 352
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ GW+H
Sbjct: 353 FFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIH 412
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+ Y
Sbjct: 413 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYC 472
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P+V+H
Sbjct: 473 PVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHA 532
Query: 363 SASKECKRKLGEAY 376
AS+ ++ + Y
Sbjct: 533 EASRLNIERMKQIY 546
>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 550
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/374 (48%), Positives = 245/374 (65%), Gaps = 16/374 (4%)
Query: 18 VSHTLFNPAD--IIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-SLSSLP----PVGDV 70
+HTL +P + + Q P TY SF K+ + A V + SLP + +
Sbjct: 147 ATHTL-HPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKEVNEVKEVPSLPNKSVKLLEK 205
Query: 71 GYFEISEVPTVEELGYKGYGQEELS------PFRGGESEALKKLRESISDKEWVANFEKP 124
+ E +PT+++LGY + + F GGE+ A++ L ++++ +WVA FEKP
Sbjct: 206 SFAEALRMPTLKDLGYAAAADDMKNSGKGGYAFAGGENAAIELLAKNMARSQWVATFEKP 265
Query: 125 KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ--NVKKHTSPPVSLVGQLLWRD 182
K P+ +P+TT LSPY+K GC+S R FY L+ VY N K+ + PPVSL GQL+WRD
Sbjct: 266 KTSPNDATRPSTTALSPYVKHGCISPRRFYHELSKVYSKYNSKETSKPPVSLHGQLMWRD 325
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F Y V + TPNFD+M N I +QIPW +D +LL AW+ ++TGYP+IDAIM QLR+ GW+H
Sbjct: 326 FNYLVGYSTPNFDKMIDNPIARQIPWDDDPDLLLAWKMSKTGYPYIDAIMTQLRETGWIH 385
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
HLARH VACFLTRGD++ WE G VF+ LID+DW+INN NW WLSC++ FYQY R YS
Sbjct: 386 HLARHSVACFLTRGDLWQSWEDGATVFEEYLIDADWSINNFNWQWLSCTAHFYQYFRCYS 445
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
P++FGKK DPNG+YIR +LP KDMP +YIYEPW AP+ +Q + I+G +YP P+V H
Sbjct: 446 PIAFGKKTDPNGDYIRKWLPQFKDMPAKYIYEPWEAPIELQKKVGVIVGENYPHPIVDHK 505
Query: 363 SASKECKRKLGEAY 376
SK ++ EAY
Sbjct: 506 LVSKNNMSRMKEAY 519
>gi|302745156|gb|ADL62681.1| criptochrome 2a, partial [Phreatichthys andruzzii]
Length = 488
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 163/299 (54%), Positives = 221/299 (73%), Gaps = 2/299 (0%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
VP++EELG+ G + + GGE+EAL ++ + K WVANFE+P+ + ++ L + T
Sbjct: 44 VPSLEELGFDIEGLPS-AVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLA-SPT 101
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
LSPYL+FGCLS R FY LTD+Y+ VKK +PP+SL GQLLWR+FFYT A P FD+M
Sbjct: 102 GLSPYLRFGCLSCRLFYFKLTDLYRKVKKTNTPPLSLYGQLLWREFFYTAATSNPRFDKM 161
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+GN IC +IPW + E LA W EA+TG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD
Sbjct: 162 EGNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGD 221
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+ Y PV FG++ DPNG++I
Sbjct: 222 LWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFI 281
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
R +LP+L+ P +YIY+PW AP ++Q AKCIIG YP P+V+H AS+ ++ + Y
Sbjct: 282 RRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQIY 340
>gi|343959648|dbj|BAK63681.1| cryptochrome 2 [Pan troglodytes]
Length = 380
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 163/303 (53%), Positives = 218/303 (71%), Gaps = 3/303 (0%)
Query: 84 LGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSP 141
+ + G+ E L P ++GGE+EAL +L + + K WVAN+E+P+ + ++ L + T LSP
Sbjct: 1 MTWTGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLA-SPTGLSP 59
Query: 142 YLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNR 201
YL+FGCLS R FY L D+Y+ VK++++PP+SL GQLLWR+FFYT A P FDRM+GN
Sbjct: 60 YLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNP 119
Query: 202 ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVH 261
IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V
Sbjct: 120 ICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVS 179
Query: 262 WEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFL 321
WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +L
Sbjct: 180 WESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYL 239
Query: 322 PVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQK 381
P LK P YIYEPW AP +IQ AKCIIG DYP P+V+H S+ ++ + Y +
Sbjct: 240 PKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSR 299
Query: 382 LNG 384
G
Sbjct: 300 YRG 302
>gi|403373370|gb|EJY86604.1| Cryptochrome 5 [Oxytricha trifallax]
Length = 570
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/391 (45%), Positives = 251/391 (64%), Gaps = 15/391 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PV 59
KV AG++V HTL +D+ + G+ Y F K SPL P
Sbjct: 116 KVVQICEKAGVQVHRNTGHTLLKLSDLA--DAGETCKNYGDFQKFMRDKK-IESPLDKPK 172
Query: 60 SLSSLPPVGD--VGYFEI---SEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
L LP + + + +I ++VP++ +L ++ + F GGE++AL+ + E I D
Sbjct: 173 ELPQLPNNYEKLLKHLKIEYSNDVPSISDLDRNE--KDVTTHFIGGETKALEIMEEYIKD 230
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
K V +F KP P++ LKP+TT LSPYLKFGCLS R F++ + V ++ T PPVSL
Sbjct: 231 KRRVNSFSKPFTSPNS-LKPSTTALSPYLKFGCLSIRLFHEKVKSVLRS--DCTQPPVSL 287
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+GQ+ WR+FFY ++ NF M+GN +CKQI W+ D+E++ W +TG+P IDA+M Q
Sbjct: 288 IGQIYWREFFYAKSYTVKNFHFMQGNPLCKQINWNKDEEIIKKWEMGQTGFPAIDAVMNQ 347
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GWMHHLARH VACFLTRG ++ HWE+GRDVFD+ L+D+D+A+NN NW+WLSCS+FF
Sbjct: 348 LRQEGWMHHLARHLVACFLTRGHLYQHWERGRDVFDKYLLDADYALNNANWMWLSCSAFF 407
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
QY ++YSPVSF +K D NG++IR ++P LK P EYIYEP AP+ +Q RAKCIIG DY
Sbjct: 408 SQYWKVYSPVSFFQKTDKNGDFIRKYVPALKHFPSEYIYEPSKAPVAVQKRAKCIIGEDY 467
Query: 355 PAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
P P+V + + KL +A ++ LN +
Sbjct: 468 PFPIVDYKAEQALNINKLKIIFAQSKDLNSK 498
>gi|410994568|gb|AFV96168.1| cryptochrome 2 [Talitrus saltator]
Length = 565
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 184/373 (49%), Positives = 242/373 (64%), Gaps = 5/373 (1%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVSLSSLP 65
A GIEV SHTL+ II+K GGKPPLTY++F LA P+ S L
Sbjct: 165 AQEMGIEVIVRTSHTLYELDKIIKKKGGKPPLTYKTFQNILAMMDPPPPPVAPIEASDLK 224
Query: 66 PVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFEK 123
+ + V L + G+ E L P ++GGE+EAL +L+ + K WVA+F +
Sbjct: 225 HAYTPLQHDHDDKYGVPNLEHLGFETEHLPPAVWKGGETEALSRLKHHLERKAWVASFGR 284
Query: 124 PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDF 183
PK P + L T LSPYL+FGCLS+R FY L +Y +KK PVSL G LLWR+F
Sbjct: 285 PKMTPQS-LFACPTGLSPYLRFGCLSARKFYTELNVLYTKIKK-VPAPVSLHGHLLWREF 342
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
FYT A P FD MKGN IC QIPW + E LA W +TG+PWIDAIM QLR GW+H+
Sbjct: 343 FYTAATNNPKFDHMKGNPICVQIPWDKNPEALAKWAHGQTGFPWIDAIMTQLRTEGWIHN 402
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
+ARH VACFLTRG+++V WE+G VFD LL+D+DW++N G+W+WLSCSSFF Q+ Y P
Sbjct: 403 VARHAVACFLTRGNLWVSWEEGMKVFDELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCP 462
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
V +G+K DPNG++IR +LPVLK+ P +YI+EPW AP ++Q A+CIIG+ YP P+V H +
Sbjct: 463 VRYGRKADPNGDFIRTYLPVLKNFPTKYIHEPWMAPESVQRNARCIIGQHYPLPMVDHGT 522
Query: 364 ASKECKRKLGEAY 376
S+ ++ + Y
Sbjct: 523 QSQNNIERMKQVY 535
>gi|384080881|dbj|BAM11103.1| cryptochrome 2 (photolyase-like), partial [Siebenrockiella
crassicollis]
Length = 358
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 163/309 (52%), Positives = 222/309 (71%), Gaps = 8/309 (2%)
Query: 78 VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN+E+P+ + ++ L +
Sbjct: 41 VPSLEELGFPTDG---LAPAVWKGGETEALARLDKHLERKAWVANYERPRMNANSLLA-S 96
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T LSPYL+FGCLS R FY L ++Y+ VK+ +PP+SL GQLLWR+FFYT A P FD
Sbjct: 97 PTGLSPYLRFGCLSCRLFYYRLWELYKKVKR--TPPLSLYGQLLWREFFYTAATNNPKFD 154
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
RM+GN IC QIPW + E LA W E +TG+PWIDAIM QL++ GW+HHLARH VACFLTR
Sbjct: 155 RMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLKQEGWIHHLARHAVACFLTR 214
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGN 315
GD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+ Y PV FG++ DP+G+
Sbjct: 215 GDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGD 274
Query: 316 YIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
Y+R +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+H S+ ++ +
Sbjct: 275 YVRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQI 334
Query: 376 YALNQKLNG 384
Y + G
Sbjct: 335 YQQLSRYRG 343
>gi|348681082|gb|EGZ20898.1| DNA photolyase [Phytophthora sojae]
Length = 516
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 234/391 (59%), Gaps = 39/391 (9%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A + G++ + L+N +I NGG+ P TYQ FL+ + + PLP + P
Sbjct: 121 AKSLGVQTHVTRGYELYNMDAVIAGNGGRAPKTYQMFLRAVAKQAKPAEPLPAPETLPAP 180
Query: 67 VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKG 126
V +P Y GGE +AL L+E +D+E VA FEKP
Sbjct: 181 V----------IPEKHSFIY------------GGEKKALSALKEYFADEERVAKFEKPNT 218
Query: 127 DPSAYL-KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFY 185
P+ PATT+LSP+L +GCLS R FY L D+ Q K + PPVSL GQLLWR+F++
Sbjct: 219 SPAQTPPSPATTILSPHLFYGCLSPRTFYHQLRDILQRHKNPSKPPVSLEGQLLWREFYH 278
Query: 186 TVAFGTPNFDRMKGNRICKQIPW------------SNDDEL----LAAWREARTGYPWID 229
P FD+M+ + C Q+ W ++DD+L AW+E RTG+PWID
Sbjct: 279 CHGHANPYFDKMEESPTCLQVDWRWHTIPEKEEDMTDDDKLARSQFEAWKEGRTGFPWID 338
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
AIM+QL++ GWMHHLARH VACFLTRGD+++ W +G +VF LID DW++N GNWLWLS
Sbjct: 339 AIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLS 398
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
S FF Y R+YSP++FGKK+DP G +I+ ++P LK P +YIYEPW APLT+Q A C
Sbjct: 399 SSYFFTAYFRVYSPIAFGKKWDPEGKFIKKYIPALKKFPAKYIYEPWKAPLTLQHAAGCR 458
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAYALNQ 380
IG+DYP+P+V+H A C + +YA Q
Sbjct: 459 IGKDYPSPIVAHKEAMGRCLEGMKRSYANGQ 489
>gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis]
gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis]
Length = 303
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 158/282 (56%), Positives = 204/282 (72%), Gaps = 1/282 (0%)
Query: 108 LRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH 167
++ES+ D+ WVA FEKP P++ L+P+TTVLSPYLKFGCLS+R F+Q L + + KH
Sbjct: 1 MKESLRDELWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARIFHQQLKAILKRQSKH 59
Query: 168 TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
+ PPVSL+GQLLWR+F+YTVA PNFDRM GN C QIPW + L AW RTGYP+
Sbjct: 60 SQPPVSLIGQLLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEQADHLEAWTHGRTGYPF 119
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE G+ VF++LL+D DWA+N GNW+W
Sbjct: 120 IDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEAGQRVFEQLLLDQDWALNAGNWMW 179
Query: 288 LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
LS S+FF+QY R+YSPV+FGKK DP G+YIR ++P L P IYEPW A L Q
Sbjct: 180 LSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYG 239
Query: 348 CIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSED 389
C++G DYP +V H+ KE +++ AY +N++ ED
Sbjct: 240 CVLGVDYPHRIVKHELVHKENIKRMSAAYKVNREARTGKEED 281
>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
Length = 606
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 178/388 (45%), Positives = 249/388 (64%), Gaps = 31/388 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A AG+EV +SHTL++ II+ NGG+PPLTY+ F L + +PV +
Sbjct: 80 IKKLAKEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISR--MDPPEMPVEML 137
Query: 63 S-------LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
S + P+ + + E VP++EELG+ G + + GGE+EAL ++ + K
Sbjct: 138 SGNLMGRCVTPISE-DHGEKFGVPSLEELGFDIEGLPS-AVWPGGETEALTRIERHLERK 195
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK+TSPP+SL
Sbjct: 196 AWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNTSPPLSLY 254
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYT A P FD+M+GN IC +IPW + E LA W EA+TG+PWIDAIM QL
Sbjct: 255 GQLLWREFFYTAATNNPRFDKMEGNPICVRIPWDRNMEALAKWAEAKTGFPWIDAIMTQL 314
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF
Sbjct: 315 RQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQ 374
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFL----------PVLKDMPKEYIYEPWTAPLTIQTR 345
Q+ Y PV FG++ DPNG++I L P ++ +P+ + P +I
Sbjct: 375 QFFHCYCPVGFGRRTDPNGDFISRSLLASSSDGGRSPSVRLLPRPALSTP-----SISDS 429
Query: 346 AKCIIGRDYPAPVVSHDSASKECKRKLG 373
+CI+ P VS S++ K+G
Sbjct: 430 QRCIV----LPPTVSAPSSTPSSDGKVG 453
>gi|379326851|gb|AFD01671.1| cryptochrome 1, partial [Parus major]
Length = 281
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 155/270 (57%), Positives = 203/270 (75%), Gaps = 1/270 (0%)
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VK+++SPP+SL
Sbjct: 1 KAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKENSSPPLSL 59
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM Q
Sbjct: 60 YGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 119
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF
Sbjct: 120 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFF 179
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +Y
Sbjct: 180 QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNY 239
Query: 355 PAPVVSHDSASKECKRKLGEAYALNQKLNG 384
P P+V+H AS+ ++ + Y + G
Sbjct: 240 PKPMVNHAEASRLNIERMKQIYQQLSRYRG 269
>gi|432094365|gb|ELK25942.1| Cryptochrome-1 [Myotis davidii]
Length = 535
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/379 (46%), Positives = 239/379 (63%), Gaps = 36/379 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ S
Sbjct: 113 IKKLATEAGVEVIVQISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACF+TRGD+++ WE+G Q+
Sbjct: 350 EGWIHHLARHAVACFVTRGDLWISWEEG----------------------------MKQF 381
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKC+IG +YP P
Sbjct: 382 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKVAKCLIGINYPKP 441
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 442 MVNHAEASRLNIERMKQIY 460
>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 568
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/450 (41%), Positives = 251/450 (55%), Gaps = 51/450 (11%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A + G++ + L++ +I + GK P TYQ FLK G P+P + P
Sbjct: 119 AKSLGVQTHVTKGYNLYDLEVVIASHSGKAPKTYQRFLKAVGAQPTPREPIPTPETLPSP 178
Query: 67 VGDVGYF---------------------------EISEVP------TVEELGYKGYGQEE 93
+I ++ T+ +L Y GY E
Sbjct: 179 TRKHSELYEQIANYWKDRKLSDEEKEDDLEERERQIDQIAGPEHDFTLPDLTYFGYETPE 238
Query: 94 LSPF-RGGESEALKKLRESISDKEWVANFEKPKGDPSAYL-KPATTVLSPYLKFGCLSSR 151
F GGE +AL+ L+ SD++ VA FEKPK P+ P+TTVLSPY+ +GCLS R
Sbjct: 239 KHSFIYGGEQKALEMLKNYCSDQDRVALFEKPKTSPAQIPPTPSTTVLSPYMFYGCLSPR 298
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW--- 208
FY + + + KK + PPVSL+GQLLWRDF++ P FD+M+ + C Q+ W
Sbjct: 299 TFYHQVRSIQRGRKKVSVPPVSLIGQLLWRDFYHCHGRANPYFDKMEESSTCLQVNWRYH 358
Query: 209 ---------SNDDEL----LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
S+DD+L AWR+ RTG+PWIDAIM+QL++ GWMHHLARH VACFLTR
Sbjct: 359 TIPENEEDLSDDDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTR 418
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGN 315
GD+++ W +G +VF LID DW++N GNWLWLS S FF Y R+YSP+SFGKK DP G
Sbjct: 419 GDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTAYFRVYSPISFGKKSDPEGL 478
Query: 316 YIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
+I+ ++P LK+ P +YIYEPW APLT+Q A C IG+DYP P++ H +A K C L +
Sbjct: 479 FIKKYIPALKNFPAKYIYEPWKAPLTLQHAAGCRIGKDYPTPIIEHKTAMKRCVEGLKMS 538
Query: 376 YALNQKLNGQVSEDGLKNLRRKFEGEENQE 405
YA Q S+ K R + E Q+
Sbjct: 539 YANGQYGIPPTSQTSKKRQREGSDDESKQQ 568
>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
Length = 378
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/326 (51%), Positives = 225/326 (69%), Gaps = 16/326 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 60 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 115
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 116 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 173
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 174 RKAWVANFERPRMNANSLLA-SPAGLSPYLRFGCLSCRLFYFRLTDLYRKVKKNSSPPLS 232
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 233 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 292
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 293 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 352
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRH 319
F Q+ Y PV FG++ DPNG+YIR
Sbjct: 353 FQQFFHCYCPVGFGRRTDPNGDYIRR 378
>gi|403177785|ref|XP_003336224.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173202|gb|EFP91805.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 731
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 189/447 (42%), Positives = 252/447 (56%), Gaps = 81/447 (18%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL---PVSLSS 63
A AG+E+ + HTL+ ++ G P +Y+ FL A + L SP P SL +
Sbjct: 216 AKDAGVEILTSPGHTLYPQEQVMAAAKGNLPASYRGFLS-AIEKLGPPSPAHDAPGSLPN 274
Query: 64 ---------LPP--------------------------------------VGDVGYFEIS 76
LPP G G FEI
Sbjct: 275 PGSTTLDDPLPPEFLEKWKKAWTDRLATEKDVNKKNRVAEDKAYQSPHPLSGPTGQFEI- 333
Query: 77 EVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPAT 136
PT+EELG Q S RGGE+ AL+KL E + DKE V FEKPK P+ + +T
Sbjct: 334 --PTMEELGI----QPATSHHRGGETVALQKLEEYLKDKEKVLKFEKPKTSPAEFNPAST 387
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDV-YQNVK-KHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
T LS + KFG LSSR FY L + +N K K +SPP SL+GQLLWRDFF+ N+
Sbjct: 388 TTLSAHFKFGTLSSRLFYARLKQLEKENPKIKASSPPESLIGQLLWRDFFHLQQSQIENY 447
Query: 195 DRMKGNRICKQIPWSNDDEL---------------------LAAWREARTGYPWIDAIMV 233
+++GNR+C+ W D + L AW + TG+PWIDAIM
Sbjct: 448 HQIEGNRVCRYFDWRLKDRIRRKDVEADGPEDNQDPEAQKNLRAWIDGMTGFPWIDAIMR 507
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QL+ GW+HHLARH VACFLTRG +++ WE+G +VFD LLID D ++N+GNW+WLS S++
Sbjct: 508 QLKTEGWIHHLARHSVACFLTRGHLYISWERGAEVFDDLLIDWDPSLNSGNWMWLSASAY 567
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F QY R+YSP+ FGKK+DPNGN+IRHF P LKD PK++IY+PW AP +Q +A C++G+D
Sbjct: 568 FQQYFRVYSPIQFGKKFDPNGNFIRHFCPELKDFPKQFIYQPWEAPTAVQKKANCVVGKD 627
Query: 354 YPAPVVSHDSASKECKRKLGEAYALNQ 380
YPAP+V+ A + C +K+ E Y N+
Sbjct: 628 YPAPIVNEKEARESCLKKMKEGYEKNR 654
>gi|440907719|gb|ELR57829.1| Cryptochrome-1 [Bos grunniens mutus]
Length = 589
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 178/382 (46%), Positives = 249/382 (65%), Gaps = 12/382 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 EVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKG--RDVFDRLL-IDSDWAINNGNWLWLSCSSFF 294
GW+HHLARH VACFLTRGD+++ WE+G + +F + I+ ++ + ++L L C+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKQSLFYKFKNINHFASLQHHSFLVLLCNVMH 409
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+ +Y V + DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +Y
Sbjct: 410 TTFCHLYLIVPI-MRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNY 468
Query: 355 PAPVVSHDSASKECKRKLGEAY 376
P P+V+H AS+ ++ + Y
Sbjct: 469 PKPMVNHAEASRLNIERMKQIY 490
>gi|380254427|dbj|BAL72538.1| cryptochrome1 [Siganus guttatus]
Length = 581
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/386 (44%), Positives = 239/386 (61%), Gaps = 9/386 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
V AS AG+EV +SHTL++ A II+ N G PPLTY+ F + Q P
Sbjct: 113 VHKLASEAGVEVIVRISHTLYSLAKIIELNDGHPPLTYKRFQDIISQMDAVEHPAETVTQ 172
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
L + + VP++EELG++ G + + GGE+EAL +L + + +E V
Sbjct: 173 RDLDKCTTPISKNHSDKFGVPSLEELGFETEGLSA-AVWPGGETEALMRLEQHLEWRESV 231
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
N D + L TVL PYL+FGCLS R FY LT++++ +K++ PP QL
Sbjct: 232 LNHGCSHIDARSLLA-NPTVLCPYLRFGCLSCRLFYFRLTELHKKIKQNNIPPPYFYDQL 290
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LW +F YTV+ P FD+M+GN +C QIPW + E LA W E RTG+PWIDAIM QL++
Sbjct: 291 LWSEFLYTVSTNNPCFDKMEGNPVCIQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLKQE 350
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+H LA++ VACFLTRGD+++ WE+G F+ LLID+DW++N G+W+W SCSSFF Q+
Sbjct: 351 GWIHSLAKYSVACFLTRGDLWISWEEGMKAFEELLIDADWSMNAGSWMWFSCSSFFRQFF 410
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
PV G++ DP G+YIR +LPVL+ P +YIY+PW AP +Q A CIIG YP P+
Sbjct: 411 HCRCPVESGRRKDPQGDYIRRYLPVLRGFPAKYIYDPWNAPEEVQKEANCIIGVHYPKPM 470
Query: 359 VSHDSASKECKRKLGEAYALNQKLNG 384
V+H AS ++ + Y Q+L+G
Sbjct: 471 VNHAEASCINIERMKQIY---QQLSG 493
>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 639
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 251/437 (57%), Gaps = 63/437 (14%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA-------------- 47
+V++ A++ + V + +TL++ +I+KNGGK P TY +FL+
Sbjct: 173 QVRELAASLNVHVETTHGYTLYDQDKVIEKNGGKAPATYTAFLRTVATFPEPPKPLPVPL 232
Query: 48 ----------------------GQP-LWASSPLPVSLSSLPPV-GDV--GYFEISEVPTV 81
GQ L + +LSS DV G ++ VP +
Sbjct: 233 RVSGWDDCREGLYECLVEFAQKGQDCLDEENQTTKTLSSFSQSWIDVIAGPEKLFRVPEL 292
Query: 82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYL-KPATTVLS 140
E G++ G+ S GGE+ ALK L+ ++ V FEKPK P+ +TT LS
Sbjct: 293 SEFGFEKPGRH--SFIYGGENIALKILQTYCKNEGQVVKFEKPKTSPAETCPSKSTTSLS 350
Query: 141 PYLKFGCLSSRYFYQCLTDVY-QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG 199
PYL FGC+S+R FY + D+ ++ K ++PPVSL GQLLWR+FF+ P FD+M+G
Sbjct: 351 PYLYFGCMSTRTFYHRVRDIQNRHAKASSAPPVSLDGQLLWREFFHCNGHANPQFDKMEG 410
Query: 200 NRICKQIPWS--------------NDDELLA-----AWREARTGYPWIDAIMVQLRKWGW 240
N +C I W +DE LA AW+E +TGYPWIDAIM+QL++ GW
Sbjct: 411 NPLCLYIDWRWHTLPSTKEEEDALPEDEKLAKAQFEAWKEGQTGYPWIDAIMIQLKEEGW 470
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARH VACFLTRGD+++ W +G +VF LID DW+IN GNWLWLS S+FF Y R+
Sbjct: 471 MHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASAFFTAYFRV 530
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP +FGKK+D G +IR ++P L MP +YIYEPW AP+T+Q A C++G+DYP P+V
Sbjct: 531 YSPSTFGKKWDAEGKFIRKYIPALAKMPSKYIYEPWKAPVTVQRLANCLVGKDYPFPIVD 590
Query: 361 HDSASKECKRKLGEAYA 377
H A + C + +YA
Sbjct: 591 HKIAMRRCMAGMKASYA 607
>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
Length = 541
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/377 (45%), Positives = 234/377 (62%), Gaps = 10/377 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV S SHTL++ II +NGG PPLTY+ FL + P+P S
Sbjct: 135 AREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQE 194
Query: 67 VGDV----GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+G + E+ VPT+EELG + + + + GGE+EALK+L + K W+A+F
Sbjct: 195 LGHTPLSDNHDELYGVPTMEELGLET-SKLFVEVWHGGETEALKRLDRHLERKAWIASFG 253
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
KPK + + + V SPYL+FGCLS R FY L D+Y+ VK PP SL GQLLWR+
Sbjct: 254 KPKVTSDSLMASPSGV-SPYLRFGCLSPRLFYYRLMDLYRKVKG-GPPPTSLYGQLLWRE 311
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDEL---LAAWREARTGYPWIDAIMVQLRKWG 239
FF+ V+ PNFD+M+ N IC I W D ++ L W +A+TG+PWIDAIM QL++ G
Sbjct: 312 FFFVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEG 371
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+H+LAR +A FLTRG +++ WE G VF L+D+DW+ N GNW+W S S+F Q+
Sbjct: 372 WIHYLARVAIASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWWSYSAFSQQFFN 431
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
PV F K D +G+YIR +LPVLK P YI+EPW APL +Q AKCIIG+ YP+P+V
Sbjct: 432 PPCPVEFSKSLDASGDYIRKYLPVLKGFPARYIHEPWKAPLNVQKMAKCIIGKSYPSPMV 491
Query: 360 SHDSASKECKRKLGEAY 376
H+ A + ++ Y
Sbjct: 492 DHEKAVSKNMEEMTSVY 508
>gi|348680511|gb|EGZ20327.1| hypothetical protein PHYSODRAFT_492233 [Phytophthora sojae]
Length = 650
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 179/416 (43%), Positives = 243/416 (58%), Gaps = 37/416 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQ-------PLWA 53
+ D A GI+ +TL++ +I N G+PP TY +FL+ LA Q P
Sbjct: 201 RAVDLARHLGIQTHVTHGYTLYDLDAVIAGNEGEPPKTYTAFLRSLAMQSKPPKPLPTPE 260
Query: 54 SSPLPVSLSSLPPVGDVGYFEISEVP----------TVEELGYKGYGQEELSPF-RGGES 102
P P + S V Y+++ P T+ E+ GY E PF GGE
Sbjct: 261 KLPTPTWMPSELYQQVVDYWKVRMKPEKIAGPEQQFTLPEVTDFGYAAPERHPFIYGGEQ 320
Query: 103 EALKKLRESISDKEWVANFEKPKGDPSAYLKPA-TTVLSPYLKFGCLSSRYFYQCLTDVY 161
AL LR+ ++ V FEKPK P+ A TT LSPYL FGC+S R F + +
Sbjct: 321 IALSILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGCISPRTFLHHVQSIQ 380
Query: 162 QN-VKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW------------ 208
++ K ++ PVSL GQLLWR+FF+ P FD+M+ + C QI W
Sbjct: 381 EHHAKALSATPVSLDGQLLWREFFHCHGRANPYFDKMEESPTCLQIDWRWHTIPEKEEDL 440
Query: 209 SNDDEL----LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEK 264
++DD+L AW++ RTG+PWIDAIM+QL++ GWMHHLARH VACFLTRGD+++ W +
Sbjct: 441 TDDDKLARSQFEAWKDGRTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVR 500
Query: 265 GRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
G ++F LID DW+IN GNWLWLS S FF Y R+YSP +FGKK+DP G +IR ++P L
Sbjct: 501 GLEIFQERLIDHDWSINAGNWLWLSSSYFFSAYFRVYSPSTFGKKWDPEGLFIRKYVPAL 560
Query: 325 KDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQ 380
MP +YIYEPW AP+T+Q A C+IG+DYP P+V H A + C + ++YA+ Q
Sbjct: 561 SKMPVKYIYEPWRAPMTVQHAAGCLIGKDYPFPIVDHKIAMRRCMAGMKKSYAIGQ 616
>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Nomascus
leucogenys]
Length = 543
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 166/334 (49%), Positives = 221/334 (66%), Gaps = 34/334 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + +S
Sbjct: 155 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAI------------ISRM 202
Query: 63 SLP--PVGDV--------------GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V + E VP++EELG+ E L P ++GGE+EA
Sbjct: 203 ELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFP---TEGLGPAVWQGGETEA 259
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 260 LARLDKHLERKAWVANYERPRMSANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKV 318
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 319 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 378
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 379 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 438
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIR 318
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR
Sbjct: 439 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 472
>gi|431905253|gb|ELK10298.1| Cryptochrome-1 [Pteropus alecto]
Length = 513
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 169/383 (44%), Positives = 232/383 (60%), Gaps = 58/383 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLY------------ 273
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
K+IPW + E LA W E RTG+PWIDAIM
Sbjct: 274 ------------------------------KKIPWDKNPEALAKWAEGRTGFPWIDAIMT 303
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 304 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 363
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 364 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 423
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 424 YPKPMVNHAEASRLNIERMKQIY 446
>gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens]
Length = 336
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 145/253 (57%), Positives = 185/253 (73%)
Query: 132 LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGT 191
L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL GQLLWR+FFYT A
Sbjct: 6 LLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNN 65
Query: 192 PNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW+HHLARH VAC
Sbjct: 66 PRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVAC 125
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYD 311
FLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+ Y PV FG++ D
Sbjct: 126 FLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 185
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRK 371
P+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP P+V+H S+ +
Sbjct: 186 PSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIER 245
Query: 372 LGEAYALNQKLNG 384
+ + Y + G
Sbjct: 246 MKQIYQQLSRYRG 258
>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 789
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 164/382 (42%), Positives = 219/382 (57%), Gaps = 59/382 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ + I+V S VSHTL+ II+KN G+ PLTY F + + P P
Sbjct: 160 ISEMCKELNIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIAS--MDAPPQPEPAI 217
Query: 63 SLPPVGDVGYFEISE------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISD 114
+L +G + + VPT+EELG++ G L P + GGE+EAL +L +
Sbjct: 218 TLAAIGRAVTPQCDDHDDKYGVPTLEELGFETEG---LKPPIWVGGETEALARLERHLER 274
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
K W +KK PP+SL
Sbjct: 275 KAW---------------------------------------------KIKK-AYPPLSL 288
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
GQL WR+FFY A PNFD+M GN IC QIPW + E LA W +TG+PWIDAIM Q
Sbjct: 289 HGQLFWREFFYCAATKNPNFDKMAGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQ 348
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G W+WLSCSSFF
Sbjct: 349 LREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFF 408
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Q+ Y PV FG+K DPNG+YIR +LPVLK+ P YI+EPW AP ++Q A+CIIG++Y
Sbjct: 409 QQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCIIGKNY 468
Query: 355 PAPVVSHDSASKECKRKLGEAY 376
P P+V+H AS+ ++ + Y
Sbjct: 469 PLPMVNHAIASRANMERIKQVY 490
>gi|443724902|gb|ELU12703.1| hypothetical protein CAPTEDRAFT_226189 [Capitella teleta]
Length = 564
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 14/387 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY---QSFLKLAGQPLWASSPLP 58
KVKD + +SHTLF+P D+I+ NGG PP T+ + L + G P SS
Sbjct: 136 KVKDLCMKRDVTYVERISHTLFHPDDVIEANGGNPPHTFSLMKQVLNMLGDPERPSSSPD 195
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR---GGESEALKKL--RESIS 113
+SL SLP D + + + T+++ + +E+ P GGES AL L R +
Sbjct: 196 LSLVSLPLSND--FDDRCALDTLKDFAGEYEMEEQEEPINKWIGGESRALDLLQGRLKLE 253
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
+ + F +P + P T LSP+L+FGCLS RYFY + D+Y V++ +P S
Sbjct: 254 ENAFKGGFLQPNQYRPDLIGPPLT-LSPHLRFGCLSVRYFYWAIHDIYSEVREELAPQ-S 311
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
+ QL+WR++FY ++ N+ +M+ N IC QIPW DD L W +TGYPWIDA M
Sbjct: 312 ITSQLIWREYFYIMSVKNRNYAQMENNPICLQIPWYRDDNQLERWEMGKTGYPWIDACMN 371
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HH+ RH V+CFLTRGD+++HWE G VF + L+D+DW++ GNW+W+S S+F
Sbjct: 372 QLRREGWIHHVGRHAVSCFLTRGDLWIHWEDGLKVFLKYLLDADWSVCAGNWMWVSSSAF 431
Query: 294 --FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
Q + +SP+ +G + DP G Y+R ++P L+ +P +Y++ PW AP +Q +A CI+G
Sbjct: 432 ENCLQCPQCFSPIMYGMRMDPTGEYVRRYVPELRQVPLKYLFHPWKAPKEVQEKAGCIVG 491
Query: 352 RDYPAPVVSHDSASKECKRKLGEAYAL 378
DYPAP+V H++ASK+CK ++ AL
Sbjct: 492 TDYPAPMVDHNTASKDCKDRMQAVKAL 518
>gi|388582367|gb|EIM22672.1| hypothetical protein WALSEDRAFT_53945 [Wallemia sebi CBS 633.66]
Length = 554
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 177/438 (40%), Positives = 243/438 (55%), Gaps = 60/438 (13%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSP 56
K+K A+ A +EV HTL++ +I+KN G+P T Q F L +P +
Sbjct: 113 KIKQIATDAKVEVLDITGHTLYDIDAVIEKNKGEPTTTAQGFKNLVKDMEIPRPTEGPTS 172
Query: 57 LPVS-----------LSSLPPVGDV----------------GYFEISEVPTVEELGYKGY 89
+P + + P D+ G +I PT+EELGY
Sbjct: 173 MPKADNLKLEAIRKEVKLFKPGHDINAEHRKGRMTVYDSVTGVKDILASPTLEELGYDV- 231
Query: 90 GQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
+E + GGE EAL++L + I D++ A F KP+ P+ Y PATT LSPY+KFG L
Sbjct: 232 -KEATTQIPGGEDEALRRLDKWIQDEDATATFRKPQTSPAEYDPPATTQLSPYIKFGALG 290
Query: 150 SRYFYQCLTDVYQNVKKHTSP-PVSLVGQLLWRDFFYT--VAFGTPNFDRMKGNRICKQI 206
R FY + D+ TS P +L GQL++R+ ++ +A G P F +++GN+IC+ I
Sbjct: 291 VREFYWKVVDLMDQYDGETSSEPENLPGQLIFREMYFAAQLAIGKP-FGQIRGNKICRLI 349
Query: 207 PWS--------------------NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
W D+E L W + TG+PWIDA M QL++ GWMHHLAR
Sbjct: 350 DWKLCNVYDENGEQIIPRPKGPKEDEEALQKWADGFTGFPWIDAAMRQLKQEGWMHHLAR 409
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
H VACFLTRG +++ WE+G +VFDR L+D D A N GNW+WLSCS FF+QY R Y +F
Sbjct: 410 HSVACFLTRGQLYISWERGAEVFDRYLVDRDPASNAGNWMWLSCSCFFHQYYRNYGTTTF 469
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
KYD G +R ++P LKD P +YIY+PW AP +Q +A CIIG+DYP P+V AS
Sbjct: 470 PAKYDKTGKLVRKYVPELKDYPDKYIYKPWEAPEDVQKKAGCIIGKDYPKPMVDEKRASS 529
Query: 367 ECKRKLGEAYALNQKLNG 384
EC K+ + YA +KL G
Sbjct: 530 ECMAKMKDQYA--KKLYG 545
>gi|358055721|dbj|GAA98066.1| hypothetical protein E5Q_04748 [Mixia osmundae IAM 14324]
Length = 601
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 262/480 (54%), Gaps = 79/480 (16%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVSL 61
V+ A AG++V HTL++ I K GKP ++Y F+K L G P P P+
Sbjct: 115 VEKLAKDAGVKVHVVHGHTLYDAEAIEAKTKGKPYVSYGPFVKILEGLP---QPPRPIDA 171
Query: 62 -SSLPPVG--DVGYFEISE----------------------------------VPTVEEL 84
SSLP G D+ + SE VPT+EEL
Sbjct: 172 PSSLPNPGPTDLADLKRSEHSVDTWKKNDNNAENRDGEDKIYASFTGPDGKFSVPTMEEL 231
Query: 85 GY-KGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYL 143
G K G + P GGE+EALK+L + DKE + NFEKPK +P A+ ATTVLSPYL
Sbjct: 232 GMAKATG---IHP--GGETEALKRLEAYMKDKEAIINFEKPKTNPGAFDPAATTVLSPYL 286
Query: 144 KFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC 203
KFG LS R FY L DV + K HT PPVSL+GQ LWR+FF+ TPN+ ++GN IC
Sbjct: 287 KFGALSVRTFYWRLQDVVKGTK-HTQPPVSLIGQCLWREFFHYNMRVTPNWHEIRGNPIC 345
Query: 204 KQIPWSNDD------------------------ELLAAWREARTGYPWIDAIMVQLRKWG 239
K I W DD ++L AW +TG+PWIDAIM QL+ G
Sbjct: 346 KYIDWRLDDRYDDKGEPIPRSEWKLSDEEKEAEKVLEAWTHGQTGFPWIDAIMRQLKMHG 405
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+HHLARH VACFLTRG ++ W +G++VF+R LID D A+N GNW+WLS S+F+ Q+ R
Sbjct: 406 WIHHLARHSVACFLTRGHAYISWVRGKEVFERWLIDHDPAMNTGNWMWLSASAFYSQWFR 465
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+Y +++G +D +G IR F P L +P +YIYEPW AP+++ A +G+ YP P+
Sbjct: 466 VYG-MAYGSNWDKSGALIREFCPELNKLPDKYIYEPWKAPVSVLKEAGVTLGQTYPRPIF 524
Query: 360 SHDSASKECKRKLGEAYALN------QKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQK 413
+A E + K+ AY +N LNG ++ + +GEE++ +K+K
Sbjct: 525 DDKAAKAETQAKMKNAYHVNIHGDHEAVLNGTAAKMLKEGAAAAGDGEESESKSPSKKRK 584
>gi|302745164|gb|ADL62685.1| cryptochrome 5, partial [Phreatichthys andruzzii]
Length = 411
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 208/305 (68%), Gaps = 11/305 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V A G+EV +SHTL+N II++N GKPP+TY FL + P+P
Sbjct: 112 EVMKLAEENGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSPKKPVPAPT 171
Query: 62 SSLPPVGDVGYFEISE----VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDK 115
+FE E +PT+E+LG L P F GGE EAL++L E +
Sbjct: 172 KEDMKGVSTPFFEDHEEEFRIPTLEDLGLD---TSSLGPNLFPGGEQEALRRLDEHMERT 228
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
WV FEKP+ P++ + P+TTVLSPY++FGCLS+R F+ L DVY+ K+H+ PPVSL
Sbjct: 229 TWVCKFEKPQTSPNSII-PSTTVLSPYIRFGCLSARTFWWRLADVYRG-KQHSEPPVSLH 286
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
GQLLWR+FFYT A G PNF+RM+GNR C Q+ W N+ E LAAWREARTG+P+IDAIM QL
Sbjct: 287 GQLLWREFFYTTAVGIPNFNRMEGNRHCVQVDWDNNPEHLAAWREARTGFPFIDAIMTQL 346
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+DW++N GNW WLS S+FF+
Sbjct: 347 CQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASAFFH 406
Query: 296 QYNRI 300
Q+ R+
Sbjct: 407 QFFRV 411
>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
Length = 522
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 165/377 (43%), Positives = 230/377 (61%), Gaps = 16/377 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF---LKLAGQPLWASSPLPV 59
V+ A G+EV + V+HTL+N II+ NGG PLTY+ F LK G P AS
Sbjct: 119 VRKIAVDEGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVLKDFGAPPQASETATA 178
Query: 60 S-LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+S + E + T+EELG + E S F GGE+E L+++ + + ++ WV
Sbjct: 179 EHFASCSVPLEALRDERYNMVTLEELGMRC---EHPSKFVGGETEGLRRVEKHLQNQGWV 235
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
FEKPK P++ L P+TT LSPY FGCLS R+FY L +Y ++ H + S +
Sbjct: 236 TQFEKPKTAPTSLL-PSTTGLSPYFSFGCLSVRHFYHRLDKIYAKLRSHQTSASSKSRVM 294
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND------DELLAAWRE--ARTGYPWIDA 230
+ R + R+ I W N + +A + A TG+PWIDA
Sbjct: 295 IERTRCVLLLEMLSRTCRLIARLIFLLCNWHNRFLQLTISDFVACFLSSVAETGFPWIDA 354
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
IM QL+K GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL+D+D+++N GNW+WLS
Sbjct: 355 IMSQLQKEGWVHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADYSVNAGNWMWLSG 414
Query: 291 SSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
S+F++QY RI+ PV FGK+ DP+G +IR +LPVLKD P +YIYEPW APL +Q A CI+
Sbjct: 415 SAFYHQYTRIFCPVRFGKRTDPDGTFIRAYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIV 474
Query: 351 GRDYPAPVVSHDSASKE 367
G DYP P+V H+ S++
Sbjct: 475 GMDYPFPMVDHEIVSQQ 491
>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
CCMP1335]
gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1, partial [Thalassiosira pseudonana
CCMP1335]
Length = 556
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 177/436 (40%), Positives = 245/436 (56%), Gaps = 32/436 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFN----PADIIQKNGG---KPPLTYQSFLKLAGQPLWASS 55
V+ A G++V S TL P + GG P T SF L G+ +
Sbjct: 129 VRSVAKKNGVQVMEFRSETLRPLGNVPGGYVANVGGAVNSVPSTMSSFQGLLGRIDGGNI 188
Query: 56 PLPVSLSS---LPPVGDVG----YFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL 108
PLP+ + P + D Y + E+ G +GGE+ AL +L
Sbjct: 189 PLPLDAPTKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGI-------VKGGETLALAQL 241
Query: 109 RESISDK-EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-- 165
+ +++ + +W A+FEKPK + P+TTVLSPYL GCLS R + + D +
Sbjct: 242 QSTVTARPDWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAVADANRKASSK 301
Query: 166 -KHTSPPVSLVGQLLWRDFFYTVAFGTP-----NFDRMKGNRICKQIPWSNDDELLAAWR 219
T PPVSL GQLLWRDF +A ++ RM+ N C+ +PWS+D +LL AW+
Sbjct: 302 VNKTKPPVSLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPWSSDPKLLKAWK 361
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
+ +TG+PWIDA M QLR GW+HHL RH VACFLTRGD++ WE G D F+ L+D+D+A
Sbjct: 362 DGKTGFPWIDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHFEGELLDADYA 421
Query: 280 INNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
+NN NWLWLSCS FFYQY R YSPV+F KK D NGNYIR ++P L +P +YIYEPW AP
Sbjct: 422 LNNFNWLWLSCSGFFYQYFRCYSPVAFQKKNDVNGNYIRKWVPELAGLPAKYIYEPWKAP 481
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFE 399
++ A +G +YP P+V H SKE K+ AY +++ +G+ E K +
Sbjct: 482 SSVLNAAGIKLGDNYPNPIVDHAFVSKENMSKMSLAYDMHK--DGEKQEGSKKAAATSSK 539
Query: 400 GEENQESGRRQKQKTL 415
+ + + ++QKQ TL
Sbjct: 540 NKSSDPAKKKQKQMTL 555
>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 656
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 177/414 (42%), Positives = 237/414 (57%), Gaps = 43/414 (10%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASS-------PLP 58
A G+E +TL++ +I N G+PP TY +FL+ LA QP P P
Sbjct: 212 ARQLGVETHVTHGYTLYDLDAVIAGNNGEPPKTYTAFLRALAMQPKPPKPLPTPEKVPAP 271
Query: 59 VSLSS-------------LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF-RGGESEA 104
V L S L P G + +P V + G+ E PF GGE A
Sbjct: 272 VYLPSELYQQVIDYWQNRLKPDSIAGPEQQFTLPEVTDFGFVA---PERHPFIYGGEQIA 328
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPA-TTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L LR+ ++ V FEKPK P+ A TT LSPYL FG +S R F + + ++
Sbjct: 329 LGILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGSISPRTFLHHVRGIQEH 388
Query: 164 -VKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW------------SN 210
K ++ PVSL GQLLWR+FF+ FD+M+ + C QI W ++
Sbjct: 389 HAKALSATPVSLDGQLLWREFFHCHGRANAYFDKMEESPTCLQIDWRWHTIPEREEDMTD 448
Query: 211 DDEL----LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGR 266
DD+L AW + +TG+PWIDAIM+QL++ GWMHHLARH VACFLTRGD+++ W +G
Sbjct: 449 DDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVRGL 508
Query: 267 DVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKD 326
+VF LID DW+IN GNWLWLS S FF Y R+YSP +FGKK+DP G +IR ++P L
Sbjct: 509 EVFQERLIDHDWSINCGNWLWLSASYFFSAYFRVYSPSTFGKKWDPEGLFIRKYVPALSK 568
Query: 327 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQ 380
MP +YIYEPW AP+T+Q A C+IG+DYP P+V H A + + ++YALN+
Sbjct: 569 MPVKYIYEPWKAPMTVQHAAGCLIGKDYPFPIVDHKIAMRRSMAGMKKSYALNE 622
>gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti]
gi|108881984|gb|EAT46209.1| AAEL002602-PA [Aedes aegypti]
Length = 321
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/307 (51%), Positives = 207/307 (67%), Gaps = 9/307 (2%)
Query: 28 IIQKNGGKPPLTYQSFLKLAGQPLWASSPLP-VSLSSLPPVGDVGYFEISE---VPTVEE 83
II+KNGG+ PLTY F + P P ++L ++ Y + + VPT+EE
Sbjct: 18 IIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATTPQYEDHDDKYGVPTLEE 77
Query: 84 LGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYL 143
LG++ G + L RG E+EAL +L + K WVA+F +PK P + L T LSPYL
Sbjct: 78 LGFETEGLKPLIWVRG-ETEALARLERHLERKAWVASFGRPKMTPQSLLARQTG-LSPYL 135
Query: 144 KFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC 203
+FGCLS+R FY LTD+Y+ +KK PP+SL GQLLWR+FFY A PNFD+M GN IC
Sbjct: 136 RFGCLSTRLFYYQLTDLYKKIKK-ACPPLSLYGQLLWREFFYCAATKNPNFDKMAGNPIC 194
Query: 204 KQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWE 263
QI W + E LA W +TG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD+++ E
Sbjct: 195 VQISWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISCE 254
Query: 264 KGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPV 323
+G VF+ LL+D+DW++N G +WLSCSSFF Q+ Y PV FG+K DPNG+YIR +LPV
Sbjct: 255 EGMKVFEELLLDADWSVNAG--MWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPV 312
Query: 324 LKDMPKE 330
LK++ K+
Sbjct: 313 LKEVNKK 319
>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
Length = 498
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 233/380 (61%), Gaps = 12/380 (3%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPA---DIIQKNGGKPPLTYQSFLKLAGQPLWASSPL 57
+ VK A AG++V SHTL++ I++ N GKPP+ ++ F + + +P+
Sbjct: 110 LAVKRIAEKAGVDVIVCSSHTLYDIECIEQILEMNEGKPPVLFKDFEAIVRKLGPPENPV 169
Query: 58 PVS-----LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESI 112
++ + P+ + E VP++ ELG K + GGE EAL +L I
Sbjct: 170 ESITRKSFMNCICPITST-HSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRL--GI 226
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
+ + + + D S+ L P+ T LSPYL+FGCLS + +Y+ LT Y ++ + PP+
Sbjct: 227 LEDKILGSNSSKNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQ-FSPPPM 285
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
SL QL+WR+FF+T+A PN D++ N +C QI W + + W++ TG+PWIDAIM
Sbjct: 286 SLYRQLIWREFFFTLASKNPNMDQVNDNPLCIQISWEENKDHFLCWKQGNTGFPWIDAIM 345
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
QL+K GW+HHLAR V CFLTRG +++ WE+G F+ L +D++W++N+G+WLWLSCS+
Sbjct: 346 RQLQKEGWIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLWLSCSA 405
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
FF+ + PV GKK DP+G+YIR ++P L+ MP +Y+YEPWTAP IQ A C+IG
Sbjct: 406 FFHGQIPWFCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEPWTAPDDIQRAAMCVIGE 465
Query: 353 DYPAPVVSHDSASKECKRKL 372
DYP P+V H K C ++L
Sbjct: 466 DYPHPIVDHIEQRKACLQRL 485
>gi|397603437|gb|EJK58421.1| hypothetical protein THAOC_21454 [Thalassiosira oceanica]
Length = 564
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 195/293 (66%), Gaps = 7/293 (2%)
Query: 99 GGESEALKKLRESISDK-EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCL 157
GGES AL +L+++I+ + W A +EKPK + P+TTVLSPYL GC+S R + +
Sbjct: 244 GGESYALDRLQKTITARPNWTAQYEKPKTSCTEVSDPSTTVLSPYLSIGCISPRTVWHAI 303
Query: 158 TDVYQNVKKH-TSPPVSLVGQLLWRDFFYTVAFGTPN-----FDRMKGNRICKQIPWSND 211
+ K + T PPVSL GQLLWRDF +A + + ++K N C+ IPWS+D
Sbjct: 304 ETANKQAKTNRTQPPVSLHGQLLWRDFNNLMAHSANSQHAGSWGQIKNNAFCRDIPWSSD 363
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+L++W+E RTGYPWIDA M QLR GW+HHL RH VACFLTRGD++ W +G D F+
Sbjct: 364 PNMLSSWKEGRTGYPWIDACMAQLRSEGWIHHLGRHAVACFLTRGDLWQSWVEGADHFEA 423
Query: 272 LLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
L+D+D+A+N+ NW+WLS S FFYQY R YSP+ F KK DPNGNYIR ++P L +MP ++
Sbjct: 424 ELLDADYALNSFNWMWLSASGFFYQYFRCYSPIQFQKKNDPNGNYIRKWVPELAEMPAKH 483
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
IYEPW A ++I A +G+ YP P+V H SKE K+ AY L++K G
Sbjct: 484 IYEPWKANVSILKTAGVKLGKTYPRPIVDHAVVSKENMSKMKLAYDLHKKSQG 536
>gi|341616316|gb|AEK86195.1| CRY1A, partial [Halichoeres trimaculatus]
Length = 309
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 155/313 (49%), Positives = 211/313 (67%), Gaps = 12/313 (3%)
Query: 32 NGGKPPLTYQSFLKLAGQ-----PLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGY 86
N G+PP+TY+ F L Q P + L + S P+ + + VPT+EELG+
Sbjct: 2 NDGQPPVTYKRFQALISQMDPVEPPAETVTLDIINSCATPISP-DHDDKFGVPTLEELGF 60
Query: 87 KGYGQEELSP--FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLK 144
+ G LSP + GGE+EALK+L + + K W A+ E+P+ +P++ L + T LS YL+
Sbjct: 61 ETEG---LSPAVWPGGETEALKRLEQHLEKKAWGAHCERPRMNPNSLLA-SPTELSAYLR 116
Query: 145 FGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICK 204
FGCLS R Y LTD+Y VK++ + P S GQLL R+FF+T A P FD+M+GN +C
Sbjct: 117 FGCLSCRLLYFKLTDLYHKVKQNNAVPYSPYGQLLCREFFFTTATNNPCFDKMEGNPVCV 176
Query: 205 QIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEK 264
QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HHLAR VACFLTRGD+++ WE+
Sbjct: 177 QIPWERNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARRAVACFLTRGDLWISWEE 236
Query: 265 GRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
G VF+ LLID+DW+ N G+W+WLSCS+FF Q+ + PV FG++ DP G+YIR +LPVL
Sbjct: 237 GVKVFEELLIDADWSGNAGSWMWLSCSAFFQQFFQCCCPVGFGRRTDPKGDYIRRYLPVL 296
Query: 325 KDMPKEYIYEPWT 337
+ P +YIY+PW
Sbjct: 297 RGFPDKYIYDPWN 309
>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 234/402 (58%), Gaps = 26/402 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL- 61
++ A+ AG+EV TLF+ +++++N G+P ++ K Q PV
Sbjct: 120 IRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRPVDAP 179
Query: 62 SSLP-PVGDVGYFEIS-----EVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
+P P+G+ +IS +PT++EL + SP GGES AL+ L +
Sbjct: 180 ERIPDPLGEEKMRDISPKGDFSIPTLDELSIDP--SQATSPHHGGESIALEMLTTYLQQN 237
Query: 116 E-WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP---- 170
E ++A FEKPK P+A+ ATT+LSP+L FG LS R F+ + D Q + P
Sbjct: 238 EDYIATFEKPKTSPAAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDL 297
Query: 171 PVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
P +L GQLL+R+ F+ A G P + + +GN+I + + W+E RTG+PWI
Sbjct: 298 PTNLPGQLLFREMFFAAQAALG-PVYAQTRGNKIVR----FQAEVWFRRWKEGRTGFPWI 352
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA+M QL+ GW+HHL RH VACFLTRG +VHWE+G +VF+ LID + A N GNW+WL
Sbjct: 353 DALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWL 412
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
SC++FF QYNR YSPV+FGKK+DP G +IRH++P L+ K+YIYEPW APL Q R K
Sbjct: 413 SCTAFFTQYNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRWKS 472
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
YP P+ D + C ++ EAY ++ N + DG
Sbjct: 473 -----YPEPMFDFDERRQTCIAQMKEAYEVHLMGNDEKVMDG 509
>gi|405961052|gb|EKC26912.1| Cryptochrome-1 [Crassostrea gigas]
Length = 517
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 157/360 (43%), Positives = 218/360 (60%), Gaps = 31/360 (8%)
Query: 32 NGGKPPLTYQSFLKLAG----------QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTV 81
NGG PPLT+ F + P + LPVS + G +PT+
Sbjct: 118 NGGSPPLTFSLFNLVTSTIGPPPRPVEDPDFTDISLPVSQNHDKQFG---------IPTL 168
Query: 82 EELGYKGYGQEE---LSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAY----LKP 134
E+L + +E+ L + GGES+AL+ L +I K +E P+ Y L P
Sbjct: 169 EDLNVRPECEEQNKRLVEWLGGESKALELL--AIRMKHEETAYENGYVMPNQYHPDLLSP 226
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
+ LS +L+FGCLS R FY + D ++ VK PVSL QL+WR++FYT+A N+
Sbjct: 227 PLS-LSAHLRFGCLSVRKFYWSIHDKFEEVKPSIGAPVSLSAQLMWREYFYTMAINNINY 285
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
D+M+ N IC IPW ++ E W + TGYPWIDAIM QLR GW+HH+ARH V+CFLT
Sbjct: 286 DKMETNPICLNIPWYDNPEHEEKWTKGETGYPWIDAIMKQLRYEGWVHHVARHAVSCFLT 345
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDP 312
RGD++++WE G VF + L+D+DW++ GNW+W+S S+F Q + PV +GK+ DP
Sbjct: 346 RGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMWVSSSAFEKVLQCPNCFCPVRYGKRMDP 405
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
+G Y+R +LPVLKDMP Y++EPW APL +Q +AKCI+G DYP P+V H ASKEC + +
Sbjct: 406 SGEYVRRYLPVLKDMPLRYLFEPWKAPLPVQQKAKCIVGVDYPKPMVDHQKASKECIQNM 465
>gi|389748358|gb|EIM89535.1| DNA photolyase [Stereum hirsutum FP-91666 SS1]
Length = 629
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 167/435 (38%), Positives = 249/435 (57%), Gaps = 48/435 (11%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+ V+ AG+EV V TL++P ++++KNGG+ +T + +K+ + +SPLP
Sbjct: 115 IDVEAKVREAGVEVVKAVGRTLWDPKEVVEKNGGQATMTLNALMKITAKLATPASPLPTP 174
Query: 61 LSSLPPVGDVGYFEISE-----------VPTVEELGYKGYGQEELSPFRGGESEALKKLR 109
+SLP G+ +E +PT+ ELG +P RGGES ALK L+
Sbjct: 175 -TSLPNPGNFTLSVANEQPPGSLSDEFSIPTLAELGIPASAVT--TPHRGGESLALKNLQ 231
Query: 110 ESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY---QCLTDVYQNVKK 166
+SDK ++A FEKPK P+A+ ATT+LSP+L FG LS R F+ Q + Y +K
Sbjct: 232 TLLSDKTYIATFEKPKTAPTAFEPAATTILSPHLHFGSLSVRKFHFEVQRIIAEYSESRK 291
Query: 167 HTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPWS-------------ND 211
++PP +L GQL +R+ ++ A G P F ++ GN + + IPW
Sbjct: 292 ASTPPANLPGQLYFREMYFCAQYAIGHP-FSQIAGNSVARYIPWHLPSTIPYSPTTPYTI 350
Query: 212 DELLA-----AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGR 266
D LA W TG+P++DA+M QLR+ GW+HHL RH VACFLTRG ++ WE+G
Sbjct: 351 DSPLAHRWFFRWAWGITGFPFVDALMRQLRQEGWIHHLGRHMVACFLTRGGAYISWERGA 410
Query: 267 DVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKD 326
++F+ LLID + A N GNW+WLSC++FF QY R YSPV+FGKK+DP G ++R ++P LKD
Sbjct: 411 EIFEELLIDHEPASNAGNWMWLSCTAFFSQYYRCYSPVAFGKKWDPQGIFVRRYIPELKD 470
Query: 327 MPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQV 386
P +++YEP AP + Q +A C+ V+S + A ++ + L + + +
Sbjct: 471 FPDKWVYEPHLAPESGQRKAGCL--------VLSFEDADEDGRSILPDLTVAHAR--PPP 520
Query: 387 SEDGLKNLRRKFEGE 401
+GL L+R GE
Sbjct: 521 PRNGLLPLKRPLTGE 535
>gi|452989588|gb|EME89343.1| hypothetical protein MYCFIDRAFT_201892 [Pseudocercospora fijiensis
CIRAD86]
Length = 655
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 172/450 (38%), Positives = 239/450 (53%), Gaps = 80/450 (17%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-------QPLWAS 54
KV + A AG+EV TLF+P DI++ NGGKP ++ S L+ AG QP+ A
Sbjct: 116 KVTEAAKKAGVEVIIKNGRTLFDPDDIVKANGGKPTMSI-SQLQQAGAKIGDIEQPIDAP 174
Query: 55 SPLP------VSLSSLPP----------------------VGDVGYFEISEVPTVEELGY 86
LP + + P G G F+ PT+ ELG
Sbjct: 175 KSLPDPGDMTLKIEQTKPDPNPDFNESHRESDDATFDSGIAGPSGKFD---PPTLAELGM 231
Query: 87 KGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFG 146
K SP +GGES L L ++D+++ A F+KPK P+A+ +T + SPYL FG
Sbjct: 232 KA----ATSPHKGGESVVLHSLENILADEDYAATFQKPKTSPAAFEPQSTFLTSPYLHFG 287
Query: 147 CLSSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDFFYTVAFGTP-NFDRMKGNR 201
LS RYFY + ++ + KK +SPP SL GQLL+RD ++ +F + N
Sbjct: 288 ALSCRYFYHRVAEIVERRKKEKKPTSSPPESLAGQLLFRDMYFAAQASLGWSFGQTYNNS 347
Query: 202 ICKQIPW-----------------SNDDEL----LAAWREARTGYPWIDAIMVQLRKWGW 240
C+ +PW DDE WR TG+PWIDAIM QLR GW
Sbjct: 348 HCRFVPWHLPSKVDILSKRTTGAYEIDDEEKEIWFQRWRSGTTGFPWIDAIMRQLRAEGW 407
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRG ++ WE+G +VF+ LLID + A N GNW WLSC++FF Q+ R
Sbjct: 408 IHHLARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAFFAQFYRC 467
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD------- 353
YSP++FGKK+DP+G+++R ++P LKD PK++IYEP AP+ Q +A +I D
Sbjct: 468 YSPIAFGKKWDPDGDFVRKYVPELKDFPKKFIYEPHKAPIADQKKAGVLIKGDGSDTEMD 527
Query: 354 ----YPAPVVSHDSASKECKRKLGEAYALN 379
YP P+ + + C + + AY +
Sbjct: 528 GLKVYPKPMFDFNERREICLQGMKNAYQVG 557
>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
Length = 492
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 225/388 (57%), Gaps = 13/388 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-----PLWASSPL 57
++ A A +++ +H L++ ++++ N GK P+T+ K A Q P +
Sbjct: 112 IQMLAENANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDK 171
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF-RGGESEALKKLRESISDKE 116
V + + PVG + + E VP + + G K G+ F +GGE EA+++L ++ K+
Sbjct: 172 TVFGACITPVG-LDHAEKYGVPQLSDFGGKELGRATAKLFWKGGELEAMRRLNLALQKKK 230
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
++ KP L + LSPY++FGCLS Y LT YQ + PP +L
Sbjct: 231 FI----KPPLSADTLLA-SDRALSPYMRFGCLSPCYILDRLTTEYQRTMG-SKPPETLYT 284
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+FF+ A P+ RM GN + QIPW E L+ W++ +TG+PWIDAIM QLR
Sbjct: 285 NLLWREFFFATASTNPDHHRMMGNPLALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQLR 344
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLAR V CFLTRG ++V WE+G FD L +D++W++N GNWLWLSCSS+ +
Sbjct: 345 EEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSSYVHG 404
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y PV GK+ DP G YIR F+P L+ +P ++++EPW AP ++Q A CI+G+DYP
Sbjct: 405 AVPWYCPVEVGKQVDPTGEYIRTFVPELRRLPTKFLHEPWKAPSSVQREAGCIVGKDYPQ 464
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H C +K+ LNG
Sbjct: 465 PMVNHLERRVVCVQKMQNFTQTLALLNG 492
>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 616
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 226/429 (52%), Gaps = 60/429 (13%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASS 55
K+ A T I V + TL +P +I+ N + PL +Q+FL + PL S
Sbjct: 182 KIMSMAQTLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVSDMPQPRLPLLTPS 241
Query: 56 PLP-----VSLSSLPPVGDVGYFE-----ISE-----------------VPTVEELGYKG 88
LP +S+ +L Y I+E +P ++ GY
Sbjct: 242 QLPSFESVISVETLCECFQAEYLSQSLLNITEAQLLIDTIIGKAYGLLTIPALDVFGYLT 301
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
Q GGES AL++L S +E V FEKPK P P+TT LSPYL FGCL
Sbjct: 302 PSQHSF--LYGGESVALERLEVFCSIEERVGCFEKPKTSPVQMNPPSTTALSPYLAFGCL 359
Query: 149 SSRYFYQCLTDVYQNVKKHT--SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQI 206
S R + + + N + SP SL GQL+WR+FFY A P F + N +C++I
Sbjct: 360 SVRALFYRIMFIQLNFSSVSKGSPATSLDGQLMWREFFYCYAHNVPEFASPEQNPLCRKI 419
Query: 207 PW---------------SNDDELLAA-----WREARTGYPWIDAIMVQLRKWGWMHHLAR 246
W S +++L+A+ W +TG+PWIDAIM Q+ GW HHLAR
Sbjct: 420 GWRLQNEDSDPLTTHSSSKEEDLVASEQFTCWARGKTGFPWIDAIMRQILTEGWAHHLAR 479
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
H VACFLTRGD+++ W G +F LLID DWAIN GNWLW+S S FF+ + ++SP +F
Sbjct: 480 HAVACFLTRGDLYISWIHGAKLFQELLIDMDWAINVGNWLWVSASCFFHDFQNVFSPSTF 539
Query: 307 GKKY---DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
++Y YI+H++P L++MP Y++EPW APL IQ C+IG+DYP P++ H
Sbjct: 540 PQQYYNEQEAAIYIKHYIPELQNMPDRYVFEPWRAPLNIQKSVNCLIGKDYPFPILDHHV 599
Query: 364 ASKECKRKL 372
ASK+C L
Sbjct: 600 ASKKCILAL 608
>gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus]
Length = 237
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 131/234 (55%), Positives = 176/234 (75%), Gaps = 1/234 (0%)
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
+ L ++GGE+EAL++L + + K WVANFE+P+ + L + T LSPYL+FGCLS R
Sbjct: 5 DSLHVWKGGETEALERLNKHLDRKAWVANFERPRITAQS-LFASPTGLSPYLRFGCLSCR 63
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND 211
FY L ++Y +++ +SPP+SL GQLLWR+FFYT PNFD M+GN IC QIPW ++
Sbjct: 64 VFYYNLWELYMKLRRSSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEGNPICVQIPWDHN 123
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
E LA W E RTG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE G VF+
Sbjct: 124 PEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEE 183
Query: 272 LLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
LL+D+DW++N G+W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR ++P LK
Sbjct: 184 LLLDADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYIPKLK 237
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 165/431 (38%), Positives = 228/431 (52%), Gaps = 56/431 (12%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW--------- 52
+V+ A T ++V S TL++P +II+ NGG+PP Y+ L++
Sbjct: 234 RVRAVAETLDVKVTSIRGVTLYDPHEIIRLNGGQPPTDYERLLEITDNMPQPAQPIPAPV 293
Query: 53 ----ASSPLPVSLSSL--------PPVGDV--GYFEISEVPTVEELGYKGYGQEELSP-- 96
A++ P L S P +V G E T E L+P
Sbjct: 294 KLSNAAAFTPDQLFSWLKHFYRQDPSAANVIAGVEAEKEGATPEPFVVPPLTALGLTPPS 353
Query: 97 ----FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
F GGESEA+K+L ++ V FEKPK P A+ P+TT LS YL FGCLS+R
Sbjct: 354 PHAAFYGGESEAMKRLDAFCQEERRVGLFEKPKTSPVAFDPPSTTTLSAYLTFGCLSARE 413
Query: 153 FYQCLTDVYQNVKKHTSPP-VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW--- 208
F+ + + P V+L GQL+WR+FFY A GTP FD K N CKQI W
Sbjct: 414 FFYRIMFIQLKFPLRPGPTQVTLEGQLMWREFFYCYACGTPGFDSQKQNPGCKQIDWRLR 473
Query: 209 ------------------SNDDELLA-----AWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ DE LA W+E RTG+PWIDA+M Q+ + GW HH
Sbjct: 474 AEVYDSHPEQHHQGAIVTKDADEKLALHQLQCWKEGRTGFPWIDAVMRQINQEGWAHHAG 533
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
RH VACFLTRG +++ W +G F LID DW IN GNWLW+S S FF Y R+ SP +
Sbjct: 534 RHAVACFLTRGVLYISWLQGAAYFQEKLIDMDWPINIGNWLWVSASCFFSNYRRVASPTT 593
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSAS 365
F +++D +G +IR ++P L++MP ++I+EPW APL +Q A C++G+DYP P+V +A
Sbjct: 594 FPQRWDQHGEFIRKYIPALRNMPDKFIFEPWKAPLRVQRDACCLMGKDYPFPIVDSKTAM 653
Query: 366 KECKRKLGEAY 376
C + +A+
Sbjct: 654 SRCAAGMSQAF 664
>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
Length = 641
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 172/467 (36%), Positives = 243/467 (52%), Gaps = 82/467 (17%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL- 61
++ A+ AG+EV TLF+ +++++N G+P ++ K Q PV
Sbjct: 120 IRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRPVDAP 179
Query: 62 SSLP-PVGDVGYFEIS------------------------------------EVPTVEEL 84
+P P+G+ +IS +PT++EL
Sbjct: 180 ERIPDPLGEEKMRDISGLEHEVPDHEDDINAAHRTKHNDNQYNNIAGPKGDFSIPTLDEL 239
Query: 85 GYKGYGQEELSPFRGGESEALKKLRESISDKE-WVANFEKPKGDPSAYLKPATTVLSPYL 143
+ SP GGES AL+ L + E ++A FEKPK P+A+ ATT+LSP+L
Sbjct: 240 SIDP--SQATSPHHGGESIALEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATTLLSPHL 297
Query: 144 KFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFYTV--AFGTPNFDRM 197
FG LS R F+ + D Q + P P +L GQLL+R+ F+ A G P + +
Sbjct: 298 HFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMFFAAQAALG-PVYAQT 356
Query: 198 KGNRICKQIPW-----------------SNDDELLAAW----REARTGYPWIDAIMVQLR 236
+GN+I + +PW + DDE W +E RTG+PWIDA+M QL+
Sbjct: 357 RGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTGFPWIDALMRQLK 416
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
GW+HHL RH VACFLTRG +VHWE+G +VF+ LID + A N GNW+WLSC++FF Q
Sbjct: 417 NEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFFTQ 476
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG----- 351
YNR YSPV+FGKK+DP G +IRH++P L+ K+YIYEPW APL Q R KC +
Sbjct: 477 YNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRWKCRVTGDGMV 536
Query: 352 --------RDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
R YP P+ D + C ++ EAY ++ N + DG
Sbjct: 537 EKDEETGLRAYPEPMFDFDERRQTCIAQMKEAYEVHLMGNDEKVMDG 583
>gi|452848446|gb|EME50378.1| hypothetical protein DOTSEDRAFT_145202, partial [Dothistroma
septosporum NZE10]
Length = 640
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 167/460 (36%), Positives = 244/460 (53%), Gaps = 78/460 (16%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V A AG+EV TL++P ++++ +GGKP ++ L+ AG + P+ +
Sbjct: 116 QVVKMAEDAGVEVIVKTGRTLWDPDELVKAHGGKPTMSINQ-LQAAGAKIGEIEPIVETP 174
Query: 62 SSLPPVGDVGYFEISEV---------------------------------PTVEELGYKG 88
+SLPP GD+ I + P++EELG
Sbjct: 175 TSLPPPGDMK-LNIEQTQPAPEPDINKKHRDGEESSYSAGIAGPKGDFAPPSLEELGMPA 233
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
SP +GGE+ L++LR+ + D+++ F+KPK P+A+ +T + SPYL FG L
Sbjct: 234 ----ATSPHKGGETVILERLRKILEDEDYCGTFQKPKTSPAAFEPQSTFLTSPYLHFGAL 289
Query: 149 SSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRI 202
S RYFY + ++ + KK ++PP SL GQLL+RD ++ A G +F + N
Sbjct: 290 SCRYFYHKIEEIVKKRKKANKTVSTPPESLAGQLLFRDMYFAAQAALGY-SFGQTYNNPN 348
Query: 203 CKQIPW-----------------SNDDEL----LAAWREARTGYPWIDAIMVQLRKWGWM 241
C+ IPW DD + W + TG+PWIDAIM QLR+ GW+
Sbjct: 349 CRFIPWHLPSKIDLKTKLITGEYEVDDPVKETEFKRWADGTTGFPWIDAIMRQLRQEGWI 408
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRG ++ WE+G +VF+ LLID + A N GNW WLSC++FF Q+ R Y
Sbjct: 409 HHLARHSVACFLTRGGAYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAFFAQFYRCY 468
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD-------- 353
SP++FGKK+DPNG+YIR + P L D+P +YI+EP AP+ Q AK + D
Sbjct: 469 SPIAFGKKWDPNGDYIRKYCPELADVPAKYIFEPHKAPIADQKSAKVRVDGDGTEKQRDG 528
Query: 354 ---YPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
YP P+ ++ + C + + AY + N DG
Sbjct: 529 LALYPKPMFDFNTQREICIQGMKNAYHVGLYGNNPKVMDG 568
>gi|371574660|gb|AEX49898.1| cryptochrome 1 [Helicoverpa armigera]
Length = 528
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/397 (39%), Positives = 227/397 (57%), Gaps = 21/397 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
VK G+ VSHTL+ P +I+ NGG PPLTYQ FL P+P
Sbjct: 114 VKSACKEIGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIGDPPRPVPNIDF 173
Query: 59 --VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESIS- 113
V SLP + + P E+LG E++ R GGE+ ALK++++ +S
Sbjct: 174 TGVKFGSLPECFYQEFTVYDKTPKPEDLGVF-LENEDIRMIRWVGGETTALKQMQQRLSV 232
Query: 114 --DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK----H 167
+ ++ G+P P + LSP L+FGCLS R FY + D+++ V +
Sbjct: 233 EYETFLRGSYLPTHGNPDLLGPPIS--LSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTT 290
Query: 168 TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYP 226
S + GQL+WR++FYT++ PN+ +M GN IC IPW N + + L W E RTG+P
Sbjct: 291 NSASHFITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKNPEGDELQRWVEGRTGFP 350
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
++DA M QLR GW+HH AR+ VA FLTRG +++ WE G + F + L+D+DW++ GNW+
Sbjct: 351 FVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWM 410
Query: 287 WLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+S S+F PV G++ DP+G Y+R ++P L MP EYIYEPW AP+ +Q
Sbjct: 411 WVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQE 470
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQK 381
RA C+IG+DYPAPVV+H A++ K + E + QK
Sbjct: 471 RATCVIGKDYPAPVVNHLVAAQRNKNAMKELRHMLQK 507
>gi|392587897|gb|EIW77230.1| hypothetical protein CONPUDRAFT_129501 [Coniophora puteana
RWD-64-598 SS2]
Length = 658
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 226/441 (51%), Gaps = 73/441 (16%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA--------------- 47
VK + G EV + HTL++P ++ N GKP ++ S+ K A
Sbjct: 119 VKRVRALGGTEVLAVHGHTLYDPQRVVAANHGKPTMSLASWRKAAQGLPEPERPLPPPEK 178
Query: 48 ----------------GQPLWASSPL-----PVSLSSLPPVGDVGYFEISEVPTVEELGY 86
QP+ + L L + G +P+++ELG
Sbjct: 179 LPPPGDTDLGDAFTRKNQPIGCDTDLNEDTRETELHCYDHIA--GPNNEFAIPSMDELGL 236
Query: 87 KGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFG 146
+ GGE+EAL++L DK VA F KPK P+ + PATT+LSPYLKFG
Sbjct: 237 P----PATTSIYGGETEALRRLDAYCRDKVRVATFAKPKTSPAEFDPPATTLLSPYLKFG 292
Query: 147 CLSSRYFYQCLTDVY----------QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP-NFD 195
CLSSR F + D + K + PP +L GQLL+R+ +Y NF
Sbjct: 293 CLSSREFLWRVRDAVDEYVKSNGDAKKSKPASKPPENLEGQLLFREMYYAAECAQGINFG 352
Query: 196 RMKGNRICKQIPW--------------------SNDDELLAAWREARTGYPWIDAIMVQL 235
+++GN IC+ I W + D+E +W+E +TG+PWIDAIM QL
Sbjct: 353 QVRGNSICRFIDWKLPNQYAADGSKLVPRPRGNAVDEERFQSWKEGKTGFPWIDAIMRQL 412
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R GW+HHLARH VACFLTRG ++ WE+G +VFD LLID D N GNW+WLSCS+FF
Sbjct: 413 RLEGWIHHLARHSVACFLTRGQCYISWERGAEVFDELLIDWDPCSNAGNWMWLSCSAFFS 472
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y R+Y SF +K+D G +R F P L P +YIY P TAP+ +Q +A CIIGRDYP
Sbjct: 473 SYYRVYGVKSFPEKFDKTGKLVRKFCPELAKFPDKYIYAPHTAPIDVQKKAGCIIGRDYP 532
Query: 356 APVVSHDSASKECKRKLGEAY 376
P++ + C ++ AY
Sbjct: 533 MPILDDKLEKERCISRIKMAY 553
>gi|350633368|gb|EHA21733.1| Hypothetical protein ASPNIDRAFT_184343 [Aspergillus niger ATCC
1015]
Length = 640
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 170/456 (37%), Positives = 236/456 (51%), Gaps = 82/456 (17%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL- 61
V A AG+EV TLF+ ++++ N G+P ++ K Q PV
Sbjct: 120 VTKLAKEAGVEVIVKSGRTLFDSDEVVKHNKGEPTMSIHQVEKAIEQINNGVPDRPVDAP 179
Query: 62 SSLP-PVGDVGYFEIS------------------------------------EVPTVEEL 84
+P P+G+ +IS VPT++EL
Sbjct: 180 ERIPDPLGEEKMRDISGLEHEVPDQEDDINAAHRTKHNDNQYKNIAGPKDDFSVPTLDEL 239
Query: 85 GYKGYGQEELSPFRGGESEALKKLRESISDKE-WVANFEKPKGDPSAYLKPATTVLSPYL 143
+ SP GGES AL+ L + E ++A FEKPK P+A+ ATT+LSP+L
Sbjct: 240 SIDP--SQATSPHHGGESIALEMLTTYLQQNEDFIATFEKPKTSPAAFHPQATTLLSPHL 297
Query: 144 KFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFYTV--AFGTPNFDRM 197
FG LS R F+ + D Q + P P +L GQLL+R+ F+ A G P + +
Sbjct: 298 HFGSLSVRKFWHDVQDTLQQHESAHKPTSDLPTNLPGQLLFREMFFAAQAALG-PVYAQT 356
Query: 198 KGNRICKQIPW-----------------SNDDELLAAW----REARTGYPWIDAIMVQLR 236
+GN+I + +PW + DDE W +E RTG+PWIDA+M QL+
Sbjct: 357 RGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTGFPWIDALMRQLK 416
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
GW+HHL RH VACFLTRG +VHWE+G +VF+ LID + A N GNW+WLSC++FF Q
Sbjct: 417 NEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFFTQ 476
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG----- 351
YNR YSPV+FGKK+DP G ++RH++P L+ K+YIYEPW APL Q R KC +
Sbjct: 477 YNRCYSPVAFGKKWDPEGRFVRHYIPELEHYDKKYIYEPWKAPLEDQKRWKCRVAGDGMV 536
Query: 352 --------RDYPAPVVSHDSASKECKRKLGEAYALN 379
R YP P+ D + C ++ EAY ++
Sbjct: 537 EKDEETGLRAYPEPMFDFDERRQTCIAQMKEAYEVH 572
>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 217/378 (57%), Gaps = 10/378 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-----PLWASSPL 57
V A G+EV VSHTL++ +++ N GK P+T+ K A Q P +
Sbjct: 126 VTHLAKNLGVEVIQRVSHTLYDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDK 185
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF-RGGESEALKKLRESISDKE 116
V + L PVG + + VP + E G K + + GGE EAL++L ++ K+
Sbjct: 186 TVFGACLTPVGP-DHADKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAAL--KK 242
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
N + +G + LSPY++FGCLS R +YQ L Y KK + PP +L
Sbjct: 243 CAENDFEERGWTIDEMFSNDAHLSPYMRFGCLSPRLYYQQLALTYMKEKK-SIPPATLFT 301
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
L+ R+ F VA + D+M N + Q PW + E L W+E +TG+PWIDAIM QLR
Sbjct: 302 GLVRRELFLHVASHNADLDKMLDNPLSVQFPWEENKEGLERWKEGKTGFPWIDAIMRQLR 361
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLAR V CFLTRG ++V WE+G FD L +D++W++N NWLWLSCSS+ +
Sbjct: 362 EEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLWLSCSSYVHG 421
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y PV GKK DP G+YI+ ++P ++ +P EY+ EPW APL++Q +C++G DYP+
Sbjct: 422 AVPWYCPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSVQKACRCVVGEDYPS 481
Query: 357 PVVSHDSASKECKRKLGE 374
P+V H C +++ +
Sbjct: 482 PIVDHMEQRMICVQRMQQ 499
>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
Length = 548
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 223/388 (57%), Gaps = 21/388 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
VK G+ VSHTL+ P +I+ NGG PPLTYQ FL P+P
Sbjct: 114 VKSACKEIGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIGDPPRPVPNIDF 173
Query: 59 --VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESIS- 113
V SLP + + P E+LG E++ R GGE+ ALK++++ +S
Sbjct: 174 TGVKFGSLPECFYQEFTVYDKTPKPEDLGVF-LENEDIRMIRWVGGETTALKQMQQRLSV 232
Query: 114 --DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK----H 167
+ ++ G+P P + LSP L+FGCLS R FY + D+++ V +
Sbjct: 233 EYETFLRGSYLPTHGNPDLLGPPIS--LSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTT 290
Query: 168 TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYP 226
S + GQL+WR++FYT++ PN+ +M GN IC IPW N + + L W E RTG+P
Sbjct: 291 NSASHFITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKNPEGDELQRWVEGRTGFP 350
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
++DA M QLR GW+HH AR+ VA FLTRG +++ WE G + F + L+D+DW++ GNW+
Sbjct: 351 FVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWM 410
Query: 287 WLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+S S+F PV G++ DP+G Y+R ++P L MP EYIYEPW AP+ +Q
Sbjct: 411 WVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQE 470
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKL 372
RA C+IG+DYPAPVV+H A++ K +
Sbjct: 471 RATCVIGKDYPAPVVNHLVAAQRNKNAM 498
>gi|398412077|ref|XP_003857369.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
gi|339477254|gb|EGP92345.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
Length = 670
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 169/458 (36%), Positives = 237/458 (51%), Gaps = 74/458 (16%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V + A AG+EV + TL++ +I++KNG KP +T + L+ AG + +
Sbjct: 116 QVLESAREAGVEVITKFGRTLWDSDEIVKKNGNKPTMTIKQ-LEAAGDKIGEVEKPIDAP 174
Query: 62 SSLPPVGDVGY-FEISE-------------------------------VPTVEELGYKGY 89
+P GD+ FE ++ VP++EELG
Sbjct: 175 KKIPDPGDMSLDFEQTQPKTKPDFNEKFREGEDGSYGSGVAGPKGDFAVPSLEELGMP-- 232
Query: 90 GQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
+ RGGE+ LK+L + D+++ FEKPK P+A+ +T + SPYL FG LS
Sbjct: 233 --VATTQHRGGETIGLKQLEGILKDEDYTGTFEKPKTSPAAFEPQSTFLTSPYLHFGALS 290
Query: 150 SRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDFFYTVAFGTP-NFDRMKGNRICK 204
RYFY + D+ + KK +SPP SL+GQLL+RD ++ +F + N C+
Sbjct: 291 VRYFYHRVQDIIEKRKKSKQPTSSPPESLIGQLLFRDMYFGAQASLGWSFGQTYNNPHCR 350
Query: 205 QIPWS---------------------NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
IPW DE W TG+PWIDAIM QLR+ GW+HH
Sbjct: 351 FIPWHLPSKVNTASRLITGEYEVDSPEADEWFKRWSNGTTGFPWIDAIMRQLRQEGWIHH 410
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
LARH VACFLTRG ++ WE+G +VF+ LLID + A N GNW WLSC++FF Q+ R YSP
Sbjct: 411 LARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAFFAQFYRCYSP 470
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------- 353
V+FGKK+D G YIR ++P L DMPK+YIYEP AP+ Q +AK +I D
Sbjct: 471 VAFGKKWDDEGAYIRKYVPELADMPKKYIYEPHKAPIVDQKKAKVLIKGDGSEKEADGVK 530
Query: 354 -YPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
YP P+ C + +AY + + + DG
Sbjct: 531 VYPKPMFDFAQRRDVCLAGMKKAYEVKLYGDAKQVMDG 568
>gi|408391364|gb|EKJ70743.1| hypothetical protein FPSE_09113 [Fusarium pseudograminearum CS3096]
Length = 637
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 179/468 (38%), Positives = 241/468 (51%), Gaps = 71/468 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS---PLPV 59
V A AG+EV TL++ I++K+GGKP ++ L+ AG L P P
Sbjct: 117 VTQAAKDAGVEVIIRSGRTLWDSDQIVEKHGGKPTMSITQ-LQAAGSKLGQVKKPIPAPK 175
Query: 60 SL----------------------SSLPPVGDVGYFEIS------EVPTVEELGYKGYGQ 91
+L S + GD Y +IS + T+EELG+
Sbjct: 176 NLPDPGDMPVNFDQNEPDTKPDFNSEIRTEGDKAYTKISGPKGDFAIETMEELGFP---- 231
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
+P RGGE+ ALK L E I+DK++ A F+KPK P+ + ATT+LSP+L FG LS R
Sbjct: 232 PAATPHRGGETLALKALDEIIADKKYTATFQKPKTSPAQFEPQATTLLSPHLHFGSLSVR 291
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPW- 208
FY + DV + K +SPP SL+GQLL+RD ++ A G F + N C+ IPW
Sbjct: 292 EFYWRVKDVVDSYKGASSPPESLIGQLLFRDMYFAAQAALGY-VFSQTANNPYCRFIPWH 350
Query: 209 -------------------SNDDEL-LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHC 248
S + E+ WR TG+PWIDA+M QL+ GW+HHL RH
Sbjct: 351 LPSKRDPETGLVTGEYHVDSEEAEIWFKRWRAGMTGFPWIDALMRQLKDEGWIHHLGRHA 410
Query: 249 VACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGK 308
VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSCS+FF QY R YSPV+FG+
Sbjct: 411 VACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCSAFFSQYFRCYSPVAFGQ 470
Query: 309 KYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------YPAPVV 359
K+D G IR ++P LK+M +YIYEPW APL Q +A + D YP P+
Sbjct: 471 KWDKKGELIRRYVPELKNMDAKYIYEPWKAPLPDQKKAGVRVKGDGLNNVEEGTYPKPMF 530
Query: 360 SHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESG 407
C + AY + N + DG RR F + + G
Sbjct: 531 DFAKRRDVCISSMKAAYQVGLHGNDGQALDG--TWRRLFPTDRGEVQG 576
>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
Length = 685
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 174/451 (38%), Positives = 234/451 (51%), Gaps = 69/451 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS---PLPV 59
V A AG+EV TL++ I++K+GGKP ++ L+ AG L P P
Sbjct: 169 VTQAAKDAGVEVIIRSGRTLWDSDQIVEKHGGKPTMSITQ-LQAAGSKLGQVKKPIPAPK 227
Query: 60 SL----------------------SSLPPVGDVGYFEIS------EVPTVEELGYKGYGQ 91
+L S + GD Y +IS + T+EELG+
Sbjct: 228 NLPDPGDMPVNFDQDEPDTKPDFNSEIRTEGDKTYTKISGPKGDFAIETMEELGFP---- 283
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
+P RGGE+ ALK L E I+DK++ A F+KPK P+ + ATT+LSP+L FG LS R
Sbjct: 284 PATTPHRGGETLALKALDEIIADKKYTATFQKPKTSPAQFEPQATTLLSPHLHFGSLSVR 343
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPW- 208
FY + DV + K +SPP SL+GQLL+RD ++ A G F + N C+ IPW
Sbjct: 344 EFYWRVKDVVDSYKGASSPPESLIGQLLFRDMYFAAQAALGYV-FSQTANNPYCRFIPWH 402
Query: 209 --------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHC 248
D W+ TG+PWIDA+M QL+ GW+HHL RH
Sbjct: 403 LPSKRDPETGLVTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLKDEGWIHHLGRHA 462
Query: 249 VACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGK 308
VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSCS+FF QY R YSPV+FG+
Sbjct: 463 VACFLTRGGCYIDWERGCEVFEEWLIDHEPACNVGNWQWLSCSAFFSQYFRCYSPVAFGQ 522
Query: 309 KYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------YPAPVV 359
K+D G +IR ++P LK+M +YIYEPW APLT Q +A + D YP P+
Sbjct: 523 KWDKKGEFIRRYVPELKNMDAKYIYEPWKAPLTDQKKAGVRVKGDGLNNVEEGTYPKPMF 582
Query: 360 SHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
C + AY + N + DG
Sbjct: 583 DFAKRRDVCISSMKVAYQVGLHGNDGQALDG 613
>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
Length = 628
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/463 (37%), Positives = 244/463 (52%), Gaps = 75/463 (16%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-------------QPLWA 53
AS AG+EV TL++ ++ K+GGKP ++ S L+ AG Q L
Sbjct: 122 ASEAGVEVIVKSGRTLWDSDAVVAKHGGKPTMSI-SQLQTAGAKVGPIAKPIPAPQSLPN 180
Query: 54 SSPLPVSLSSLPPV------------GDVGYFEIS------EVPTVEELGYKGYGQEELS 95
+PV PP GD Y +I+ + T+EELG+ +
Sbjct: 181 PGEMPVDFGQTPPETEPDFNAEQRTEGDAAYAKIAGPEGDFAIETMEELGFPPAS----T 236
Query: 96 PFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY- 154
P RGGE+ AL L E ++DK++ A FEKPK P+A+ +TT +SP+L FG LS R FY
Sbjct: 237 PHRGGETRALGMLEEILADKKYTATFEKPKTSPAAFEPQSTTFMSPFLHFGALSVREFYW 296
Query: 155 --QCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPW-- 208
+ + D Y K + P SL+GQLL+RD ++ A G +F + N C+ IPW
Sbjct: 297 RVRAVVDAYG--KGASKVPESLLGQLLFRDMYFAAHAALGY-SFTQTANNPYCRFIPWHL 353
Query: 209 -------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCV 249
+ DE W+ TG+PWIDA+M QLR+ GW+HHL RH V
Sbjct: 354 PSKVDAKTGLVTGEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQLREEGWIHHLGRHSV 413
Query: 250 ACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKK 309
ACFLTRG ++ WE+G +VF+ L+D + A N GNW WLSC++FF QY R YSPVSFG+K
Sbjct: 414 ACFLTRGGCYIDWERGCEVFEEWLLDHEPACNAGNWQWLSCTAFFSQYFRCYSPVSFGQK 473
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC-IIGRD-------YPAPVVSH 361
+D G Y+R ++P LKD+ +YIYEPW APL Q +A + GR YP P+
Sbjct: 474 WDKQGAYVRRWVPELKDLDAKYIYEPWKAPLPDQKKAGVRVTGRGETQERGVYPKPMFDF 533
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQ 404
+ C + +AY + N DG + R+ F G++ +
Sbjct: 534 NERRTACLAAMKKAYEVGLHGNDDKVLDG--SWRKLFAGQDTE 574
>gi|449304579|gb|EMD00586.1| hypothetical protein BAUCODRAFT_175264 [Baudoinia compniacensis
UAMH 10762]
Length = 647
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 172/460 (37%), Positives = 244/460 (53%), Gaps = 78/460 (16%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V + A AG+EV TL++ DI++ + GKP ++ S L+ AG + LP+
Sbjct: 116 QVVESARKAGVEVIVKSGRTLWDSDDIVKAHNGKPTMSI-SQLQSAGSKV-GDIALPIEP 173
Query: 62 -SSLPPVGDVG-----------------YFEISE---------------VPTVEELGYKG 88
S+P GD Y + E VPT++ELG K
Sbjct: 174 PKSIPNPGDTNLDIKQERPSSEPDINEQYRDADEGSYSFGIAGPNGDYSVPTLKELGLKA 233
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
+P RGGES L KL ++D+++ FEKPK P+A+ AT + SPYL FG L
Sbjct: 234 ----ATTPHRGGESVVLGKLHIILADEDYTGTFEKPKTSPAAFEPQATCLTSPYLHFGAL 289
Query: 149 SSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRI 202
S RYFY + ++ + +K + PP SL GQLL+RD ++ A G +F + N
Sbjct: 290 SCRYFYHRIEEIVERRRKAKRPVSEPPTSLTGQLLFRDMYFAAQAALGY-SFGQTYNNDH 348
Query: 203 CKQIPW-----------------SNDDEL----LAAWREARTGYPWIDAIMVQLRKWGWM 241
C+ IPW DDE+ WRE +TG+PWIDAIM QL+ GW+
Sbjct: 349 CRFIPWHLPSRIDVSTKLITGDYEVDDEVKQREFIRWREGKTGFPWIDAIMRQLKYEGWI 408
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++F+ Q+ R Y
Sbjct: 409 HHLARHAVACFLTRGGCYISWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFYSQFYRCY 468
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD-------- 353
SP++FG+K+D NG++IR ++P LKDMPK+YIYEP AP+ Q +A +I D
Sbjct: 469 SPIAFGRKWDDNGDFIRKYVPELKDMPKKYIYEPHKAPVQDQKKAGVLIKGDGEEEERDG 528
Query: 354 ---YPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
YP P+ + + C + + AY + + DG
Sbjct: 529 TRVYPKPMFDFPTQREICIQGMKAAYHVGLRGKSPQVLDG 568
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus]
Length = 534
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/399 (39%), Positives = 229/399 (57%), Gaps = 28/399 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
V+ G+ V+HTL+NP +I+ NGG PPLTYQ FL ++ G P P PV
Sbjct: 114 VRALCRDIGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNP-----PRPV 168
Query: 60 --------SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLR 109
+ SLP + + P E+LG E++ R GGE+ ALK+++
Sbjct: 169 DDVDLNGVNFGSLPESFYREFVVFDKAPKPEDLGVF-LENEDIRMIRWVGGETAALKQMQ 227
Query: 110 ESIS---DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK 166
E ++ + ++ G+P P + LSP L+FGCLS R FY L D++Q V +
Sbjct: 228 ERLAVEYETFCRGSYLPTHGNPDLLGPPIS--LSPALRFGCLSVRRFYWSLQDLFQQVHQ 285
Query: 167 HTSPPVSLV-GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTG 224
+ GQL+WR++FYT++ PN+ +M GN IC IPW +++ L W+E RTG
Sbjct: 286 GRLASTQFITGQLIWREYFYTMSVNNPNYAQMSGNPICLDIPWKEPENDELQRWKEGRTG 345
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+P++DA M QLR GW+HH+ R+ VA FLTRG +++ WE G F + L+D+DW++ GN
Sbjct: 346 FPFVDAAMRQLRTEGWLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADWSVCAGN 405
Query: 285 WLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTI 342
W+W+S S+F PV G++ +P G+Y+R ++P L MP EYIYEPW APL +
Sbjct: 406 WMWVSSSAFEALLDSGECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEV 465
Query: 343 QTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQK 381
Q A C+IGRDYPAPVV H +A+ + + E L +K
Sbjct: 466 QEAAGCVIGRDYPAPVVDHTAAAARNRANMQELRRLLEK 504
>gi|404313303|gb|AFR54426.1| cryptochrome 1 [Mythimna separata]
Length = 528
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/399 (39%), Positives = 225/399 (56%), Gaps = 25/399 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS-- 60
VK G+ VSHTL+ P +I+ NGG PPLTYQ FL P PVS
Sbjct: 114 VKAACKEIGVVCKENVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATI--GDPPRPVSNV 171
Query: 61 ------LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESI 112
SLP + + P E+LG E++ R GGE+ ALK++++ +
Sbjct: 172 DFTGVKFGSLPECFYQEFTVFDKTPKPEDLGVF-LENEDIRMIRWVGGETTALKQMQQRL 230
Query: 113 S---DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK--- 166
+ + ++ G+P P + LSP L+FGCLS R FY L D+++ V +
Sbjct: 231 AVEYETFLRGSYLPTHGNPDLLGPPIS--LSPALRFGCLSVRSFYWALQDLFRQVHQGRL 288
Query: 167 -HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTG 224
S + GQL+WR++FYT++ PN+ +M GN IC IPW + L W E RTG
Sbjct: 289 ATQSASHVIAGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKEPQGDELQRWVEGRTG 348
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+P++DA M QLR GW+HH AR+ VA FLTRG +++ WE G + F + L+D+DW++ GN
Sbjct: 349 FPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGN 408
Query: 285 WLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTI 342
W+W+S S+F PV G++ DP+G Y+R ++P L MP +YIYEPW AP+ +
Sbjct: 409 WMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEPWKAPIDV 468
Query: 343 QTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQK 381
Q RA CIIG+DYP PVV+H A+++ K + E + QK
Sbjct: 469 QERATCIIGKDYPGPVVNHLVAAQKNKNAMKELRHILQK 507
>gi|345570555|gb|EGX53376.1| hypothetical protein AOL_s00006g242 [Arthrobotrys oligospora ATCC
24927]
Length = 637
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 162/438 (36%), Positives = 227/438 (51%), Gaps = 75/438 (17%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG++ TL++ DI+ NGG T Q L+ AGQ + + S+PP
Sbjct: 120 AKEAGVQCIVKYGRTLWDSDDIVGINGGPTMTTMQ--LQKAGQKIGPPPRPIPAPISIPP 177
Query: 67 VGDVGYFEISE------------------------------------VPTVEELGYKGYG 90
GD+ +++ VPT+EEL
Sbjct: 178 PGDLSLEHVTQDKPGPQYFNADQNQSNRSSEDSTYHAGLRGPKGDFSVPTMEELKMTA-- 235
Query: 91 QEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSS 150
+P RGGE AL+ L I DKE+ A F KP+ P+A+ +T +LSP++ FG +S
Sbjct: 236 ---TTPHRGGEKIALEVLENVIKDKEYTATFSKPETAPTAFQPASTCLLSPHMHFGSISC 292
Query: 151 RYFYQCLTDVYQ----NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN-FDRMKGNRICKQ 205
R FY + +V + + KK T PP SL GQL +RD ++ G F + N +
Sbjct: 293 RKFYWDVLEVVEEWEKSGKKATEPPCSLTGQLFFRDMYFAAQAGIGTCFGQTLHNSKVRY 352
Query: 206 IPWS---------------------------NDDELLAAWREARTGYPWIDAIMVQLRKW 238
IPW+ +E WRE RTG+PWIDAIM+QL+
Sbjct: 353 IPWNLPSKHQPNPDDPKKSLSIKGTYHVDSEEAEEWFIRWREGRTGFPWIDAIMIQLKTE 412
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW+HHLARH VACFLTRG ++ WE+G +VF+ L+D + + N GNW WLSC++FF QY
Sbjct: 413 GWIHHLARHAVACFLTRGGCYIDWERGAEVFEEWLLDHEISCNAGNWQWLSCTAFFSQYM 472
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RIYSP++F +K D GNY+RH++P LK+ P++YIYEPW P+ Q A CIIG+DYP P+
Sbjct: 473 RIYSPIAFPQKTDKEGNYVRHYIPQLKNFPEKYIYEPWKCPIPDQRAAGCIIGKDYPKPM 532
Query: 359 VSHDSASKECKRKLGEAY 376
+ C R + A+
Sbjct: 533 FDWKDRKEICIRGMKAAF 550
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/432 (36%), Positives = 226/432 (52%), Gaps = 57/432 (13%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V+ A + + V + TL+NP +II+ N G+ P Y+ L++ + + P+P +
Sbjct: 214 RVRAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMPQPTQPIPAPV 273
Query: 62 SSLPP-----------VGDVGYFEISEVPTVEEL-GYKGYGQEEL--------------- 94
L + DV SE + + G + EL
Sbjct: 274 KLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPPLTAFGLTPPT 333
Query: 95 --SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR- 151
+P GGES A+K+L + D+ V FEKPK P + P+TT LS YL FGCLS+R
Sbjct: 334 PHAPLIGGESAAMKRLDDFCEDERRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGCLSARE 393
Query: 152 YFYQCLTDVYQNVKKHTSPP-VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW-- 208
+FY+ + Q + P V+L GQL+WR+FFY GT NFD + N CKQI W
Sbjct: 394 FFYRIMFIQLQYPHRPGLPTQVTLEGQLMWREFFYCYMCGTRNFDSQELNPSCKQIDWRL 453
Query: 209 -------------------SNDDELLA-----AWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ DE LA W++ RTG+PWIDA+M Q+ + GW HH
Sbjct: 454 LNEYYVSHPEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAVMRQINQEGWTHHA 513
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPV 304
RH VACFLTRG +++ W +G F +ID DW IN GNWLW+S S FF Y R+ SP
Sbjct: 514 GRHAVACFLTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSASCFFTNYRRMASPS 573
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+F +++D G +IR ++P L++MP +Y++EPW APL +Q A C+IG++YP P+V A
Sbjct: 574 TFPQRWDQQGQFIRKYIPALRNMPDKYVFEPWKAPLKVQRDADCLIGKNYPFPIVDSKLA 633
Query: 365 SKECKRKLGEAY 376
C + ++
Sbjct: 634 MSRCIAGMSRSF 645
>gi|386762983|gb|AFJ22638.1| cryptochrome 1 [Agrotis ipsilon]
Length = 528
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 157/397 (39%), Positives = 228/397 (57%), Gaps = 21/397 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
VK G+ VSHTL+ P +I+ NGG PPLTYQ FL +P+
Sbjct: 114 VKAACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVTTIGDPPRPVHDIDL 173
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESISD 114
V SLP + + P E+LG E++ R GGES ALK++++ ++
Sbjct: 174 RRVKFGSLPECFYNEFTVFDKAPKPEDLGVF-LENEDIRMIRWVGGESTALKQMQQRLAV 232
Query: 115 KEWV---ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK--KHTS 169
+ ++ G+P P + LSP L+FGCLS R FY + D+++ V + T+
Sbjct: 233 EHETFLRGSYLPTHGNPDLLGPPIS--LSPALRFGCLSVRSFYWSVQDLFRKVHQGRLTT 290
Query: 170 PPVS--LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYP 226
S + GQL+WR++F+T++ PN+ +M GN IC IPW N + + L W + RTG+P
Sbjct: 291 QSASHFITGQLIWREYFHTMSVNNPNYGQMSGNPICLDIPWKNPEGDELKRWEDGRTGFP 350
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
++DA M QL+ GW+HH AR+ VA FLTRG +++ WE G + F + L+D DW++ GNW+
Sbjct: 351 FVDATMRQLKTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDVDWSVCAGNWM 410
Query: 287 WLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+S S+F PV G++ DP+G Y+R ++P L MP EYIYEPW AP+ IQ
Sbjct: 411 WVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELACMPVEYIYEPWKAPIDIQG 470
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQK 381
RA CIIG+DYPAPVV+H A++ K + E + QK
Sbjct: 471 RANCIIGKDYPAPVVNHLVAAQRNKNTMKELRHILQK 507
>gi|346324524|gb|EGX94121.1| cryptochrome-2 [Cordyceps militaris CM01]
Length = 902
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 236/453 (52%), Gaps = 72/453 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWA-SSPLPVSL 61
VK A AG++V + TL++ I+ KN GKP ++ L+ AG+ L A P+P
Sbjct: 117 VKAAAKDAGVKVITCSGRTLWDSDAIVAKNNGKPTMSTTQ-LQSAGKKLGAIDRPIPAP- 174
Query: 62 SSLPPVG-------------------------DVGYFEIS------EVPTVEELGYKGYG 90
SSLP G D Y I+ + T+EELG+
Sbjct: 175 SSLPDPGEMPLDFEHEQPTSKPDANSERRTKKDTEYRSIAGPKGDFSIETMEELGFP--- 231
Query: 91 QEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSS 150
+P +GGE+ ALK L + DK++ A FEKPK P+ + +TT+LSP+L FG LS
Sbjct: 232 -SATTPHKGGETRALKLLDDIAKDKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSV 290
Query: 151 RYFYQCLTDVYQNVKKHTS-PPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIP 207
R FY + D+ K S PP SL GQL +RD ++ A G P F + GN C+ IP
Sbjct: 291 REFYWRVQDIVDKYGKGASMPPASLTGQLFFRDMYFAAQAAIG-PKFTQTLGNDHCRFIP 349
Query: 208 W---SNDDELLAA------------------WREARTGYPWIDAIMVQLRKWGWMHHLAR 246
W S DE W+ TG+PWIDA+M QLR GW+HHL R
Sbjct: 350 WHLPSKVDEETGLSTGEYRVDSPEAEQWFQRWKVGMTGFPWIDALMRQLRHDGWIHHLGR 409
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
H VACFLTRG +V WE+G +VF+ L+D + A N GNW WLSC++FF QY R+YSPVSF
Sbjct: 410 HSVACFLTRGGCYVDWERGAEVFEEYLLDHEPACNAGNWQWLSCTAFFSQYFRMYSPVSF 469
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------YPAP 357
+K+D NG+++R ++P LKD+ +YIYEPW APL Q +A + D YP P
Sbjct: 470 PQKWDKNGDFVRRWVPELKDLSAKYIYEPWKAPLLDQKQAGVRVTGDGLSGDKDKTYPKP 529
Query: 358 VVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
+ + C + AY N N + DG
Sbjct: 530 MFDFSKRREVCLAAMKTAYEANLLGNDERVADG 562
>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
Length = 1229
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 174/472 (36%), Positives = 249/472 (52%), Gaps = 75/472 (15%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWA-SSPLPVS 60
KV + A AG+EV V TL++P +++++N GKP ++ ++ AG+ + A P+P
Sbjct: 683 KVMEIAKEAGVEVVIKVGRTLYDPDELVKENNGKPTMSITQ-VQNAGKKIGAIPRPIPAP 741
Query: 61 LSSLPPVGDVGYFEISE-------------------------------VPTVEELGYKGY 89
+LP G + E VPT++ELG K
Sbjct: 742 -KTLPDPGKTDFNFDQEKPAQDPDINAVQRDGDEASYSTLAGPNGDFAVPTMQELGLK-- 798
Query: 90 GQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
E + RGGE+ ALK L E+I++ E+ A FEKPK P+A+ +TT+LSP+L FG LS
Sbjct: 799 --EATTQHRGGETLALKTLDETIANSEYTATFEKPKTAPTAFSPQSTTLLSPHLHFGSLS 856
Query: 150 SRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFY--TVAFGTPNFDRMKGNRICKQI 206
R FY + D+ + K K + PP SL GQLL+RD ++ A G +F + N C+ I
Sbjct: 857 VREFYWRVQDIVTSFKGKASQPPASLTGQLLFRDMYFGAQAALGY-SFGQTYNNPACRFI 915
Query: 207 PWSND----------------DELLAA-----WREARTGYPWIDAIMVQLRKWGWMHHLA 245
PW D LA W+ RTG+PWIDA+M QL + GW+HHL
Sbjct: 916 PWHLPSAIDPATNLITGKYLVDSALAESHFQRWKHGRTGFPWIDALMRQLAREGWIHHLG 975
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
RH VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF Q+ R YSPV+
Sbjct: 976 RHAVACFLTRGGCYIDWERGAEVFEEFLIDHESACNIGNWQWLSCTAFFAQFFRCYSPVA 1035
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR---------DYPA 356
F K+D NG+++R ++P L K++IYEPW AP+ Q + C I +YP
Sbjct: 1036 FPAKWDKNGDFVRRYVPELAHFDKKFIYEPWKAPIADQKKWGCRIVESVDGYVQEGEYPK 1095
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFE-GEENQESG 407
P++ + C + + AY + N DG + R+ FE G E G
Sbjct: 1096 PMLDFNERRDTCIQAMKNAYRVGLYGNDPKVLDG--SWRKLFEDGAEGPTEG 1145
>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
Length = 539
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 229/392 (58%), Gaps = 28/392 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS-- 60
VK + GI+ VSHTL+NP D+I+ NGG PPLT++ F+ + P PV
Sbjct: 120 VKKFCKENGIKCIERVSHTLWNPHDVIKTNGGIPPLTFEMFVHTVS--VIGPPPRPVEDV 177
Query: 61 -----------LSSLPPVGDVGYFEISEVPTVEELGYKGY--GQEELSPFRGGESEALKK 107
+SS+P D+ F+ PT E+ G + + GGES+AL+
Sbjct: 178 EWSVVNFGVLPMSSIP--SDIKVFK--NFPTPEDFGISSEVGNMNRIIQWIGGESQALRH 233
Query: 108 LRESISDKE--WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK 165
L+E + +E + + P L P T+ S L+FGCLS R FY + D+Y ++
Sbjct: 234 LQERLKVEENAFREGYCLPNQARPDLLGPPTS-QSAALRFGCLSVRKFYWSIQDMYSSIC 292
Query: 166 KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND-DELLAAWREARTG 224
SP ++ QL+WR++FYT++ G + M N IC IPW ND W+E +TG
Sbjct: 293 G-PSPNQNITSQLIWREYFYTMSVGNEYYAEMDRNPICLNIPWKNDYGSDFNKWKEGKTG 351
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
YP+IDAIM QL + GW+HH+AR+ VACFLTRGD+++ WE+G + F + L+D+DW++ GN
Sbjct: 352 YPFIDAIMRQLIQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLLDADWSVCAGN 411
Query: 285 WLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTI 342
W+W+S S+F + PV++G++ DP G YI+ ++P LK+ P EY+YEPW APL +
Sbjct: 412 WMWVSSSAFEQLLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYLYEPWKAPLHV 471
Query: 343 QTRAKCIIGRDYPAPVVSHDSASKECKRKLGE 374
Q A CI+G+DYP ++ H AS++ + + E
Sbjct: 472 QETAGCIVGKDYPERIIDHQIASEKNRSYMDE 503
>gi|400602563|gb|EJP70165.1| DNA photolyase [Beauveria bassiana ARSEF 2860]
Length = 623
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/436 (38%), Positives = 232/436 (53%), Gaps = 72/436 (16%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ---PLWASSPLPVSL------ 61
G++V + TL++ I+ KN GKP ++ L+ AG+ P+ P P SL
Sbjct: 125 GVKVVTRSGRTLWDSDQIVAKNHGKPTMSITQ-LQAAGKKLGPIDRPIPAPSSLPDPGDM 183
Query: 62 ---------SSLPPV-------GDVGYFEIS------EVPTVEELGYKGYGQEELSPFRG 99
SS P V D Y I+ + T+EELG+ +P RG
Sbjct: 184 PLDFEHEHPSSKPDVNSVRRTKNDTEYKSIAGPKGDFGIETMEELGFP----SATTPHRG 239
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+ ALK L + DK++ A FEKPK P+ + +TT+LSP+L FG LS R Y + D
Sbjct: 240 GETRALKMLDDIAKDKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSVRELYWRVQD 299
Query: 160 VYQNV-KKHTSPPVSLVGQLLWRDFFYTV-AFGTPNFDRMKGNRICKQIPWS-------- 209
+ K +SPP SL GQLL+RD ++ A P+F + GN CK IPW
Sbjct: 300 IVTAYGKGASSPPASLTGQLLFRDMYFAAQAAIGPSFTQTNGNGHCKFIPWHLPSKVDLA 359
Query: 210 -------------NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRG 256
++ A W+ TG+PWIDA+M QLR GW+HHL RH VACFLTRG
Sbjct: 360 TGISTGEYRVDSPEAEQWFARWKAGMTGFPWIDALMRQLRHDGWIHHLGRHSVACFLTRG 419
Query: 257 DMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNY 316
+V WE+G VF+ L+D + A N GNW WLSC++FF QY R+YSPVSF +K+D NG++
Sbjct: 420 GCYVDWERGAQVFEEYLLDHEPACNAGNWQWLSCTAFFSQYFRMYSPVSFPQKWDKNGDF 479
Query: 317 IRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII-------------GRDYPAPVVSHDS 363
+R ++P LKD+P +YIYEPW APL Q +A + G+ YP P+
Sbjct: 480 VRRWVPELKDLPAKYIYEPWKAPLLDQKQAGVRVTGDGLSSSSDGGTGKTYPKPLFDFGE 539
Query: 364 ASKECKRKLGEAYALN 379
+ C + +AY +N
Sbjct: 540 RREICLAAMKKAYEVN 555
>gi|453088843|gb|EMF16883.1| FAD_binding_7-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 637
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 232/447 (51%), Gaps = 74/447 (16%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V A AG+EV V TL++P +++ NGGKP ++ L+ AG + +
Sbjct: 116 QVVRVAGEAGVEVIVKVGRTLYDPDALVKANGGKPTMSMTQ-LQHAGAKIGDIEQPVETP 174
Query: 62 SSLPPVGDVG-----------------YFEISEV---------------PTVEELGYKGY 89
+SLP GD+ + E V PT+EELG
Sbjct: 175 TSLPDPGDMTLDIEQEEPEAVPDINAKHREKDAVTFSSGIAGPKGDFSPPTLEELGMA-- 232
Query: 90 GQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
SP +GGE+ L+ L + + D+E+ + FEKPK P+A+ +T + SPYL FG LS
Sbjct: 233 --PATSPHKGGETVILEALEKILQDEEYTSTFEKPKTSPAAFEPQSTFLTSPYLHFGALS 290
Query: 150 SRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDFFYTV-AFGTPNFDRMKGNRICK 204
RYFY + ++ + KK ++PP SL GQLL+RD ++ A G + + GN C+
Sbjct: 291 CRYFYHRVAEIVEKRKKEKKPTSAPPESLTGQLLFRDMYFAAQAHGGWQYGQTLGNAHCR 350
Query: 205 QIPW---------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
IPW +E W + TG+PWIDA M LR GW+HH
Sbjct: 351 FIPWHLPSKVDMDTKRITAEHEIDDEEKEEWFQRWSQGTTGFPWIDAHMRALRSTGWIHH 410
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
LARH VACFLTRG ++ WE+G +VF+ LLID + A N GNW WLSC++FF Q+ R YSP
Sbjct: 411 LARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAFFSQFFRCYSP 470
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------- 353
++FGKK+D NG YIR ++P LKD+P +YIYEP AP+ Q +A + D
Sbjct: 471 IAFGKKWDANGLYIRRWIPELKDLPNKYIYEPHKAPVQDQKKAGVRVDGDGSKAEQDGLK 530
Query: 354 -YPAPVVSHDSASKECKRKLGEAYALN 379
YP P+ + C + +AY +
Sbjct: 531 LYPKPMFDFNERRDICISAMKQAYHVG 557
>gi|302745162|gb|ADL62684.1| cryptochrome 4, partial [Phreatichthys andruzzii]
Length = 274
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/240 (54%), Positives = 175/240 (72%), Gaps = 4/240 (1%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
VP++ +LG + + L P GGE+ AL++L + + WV +F K + P++ L P++T
Sbjct: 39 VPSLADLGLE-VEFDVLWP--GGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLL-PSST 94
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
LSPYL GCLS R FY L+ VY K H+ PP+SL GQ+LWR+FFYTVA TPNF +M
Sbjct: 95 GLSPYLSLGCLSVRTFYHQLSSVYAQSKNHSLPPLSLQGQVLWREFFYTVASSTPNFTKM 154
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+GN IC QI W +D E L WR A+TG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD
Sbjct: 155 EGNPICLQIQWYHDPEALEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGD 214
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
+++ WE+G VF+ LL+D+D++IN GNW+WLS S+FF++Y RI+ PV FG++ DP G Y+
Sbjct: 215 LWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHKYTRIFCPVRFGRRTDPQGQYL 274
>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
Length = 548
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/405 (38%), Positives = 231/405 (57%), Gaps = 24/405 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
VK+ G+ VSHTL+ P +I+ NGG PPLTYQ FL +P+
Sbjct: 114 VKNACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVGEVDF 173
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESIS- 113
V SLP + + P E+LG E++ R GGE+ ALK++++ ++
Sbjct: 174 TGVKFGSLPESFYNEFTVFDKTPKPEDLGVF-LETEDIRMIRWVGGETTALKQMQQRLTV 232
Query: 114 --DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK--KHTS 169
+ ++ G+P P + LSP L+FGCLS R FY + D+++ V + TS
Sbjct: 233 EYETFLRGSYLPTHGNPDLLGPPIS--LSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTS 290
Query: 170 PPVS--LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYP 226
S + GQL+WR++FYT++ PN+ +M GN IC IPW + L W E RTG+P
Sbjct: 291 NSASHFITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKTPSGDELQRWMEGRTGFP 350
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
++DA M QLR GW+HH AR+ VA FLTRG +++ WE G + F + L+D+DW++ GNW+
Sbjct: 351 FVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWM 410
Query: 287 WLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+S S+F PV G++ DP+G Y+R ++P L MP EYIYEPW AP+ +Q
Sbjct: 411 WVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQE 470
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSED 389
RA CIIG+DYP PVV+H A+ +R L++ + G++ +D
Sbjct: 471 RASCIIGKDYPDPVVNHLVAA---QRNRNAMKWLSRSVAGRLQKD 512
>gi|342883710|gb|EGU84160.1| hypothetical protein FOXB_05337 [Fusarium oxysporum Fo5176]
Length = 637
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 172/452 (38%), Positives = 239/452 (52%), Gaps = 70/452 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-------QPLWASS 55
V A AG+EV TL++ I++K+GGKP ++ L+ AG +P+ A
Sbjct: 117 VVQAAKDAGVEVLVRSGRTLWDSDQIVEKHGGKPTMSITQ-LQTAGSKLGEIRKPIPAPK 175
Query: 56 PLP------VSLSSLPPV------------GDVGYFEIS------EVPTVEELGYKGYGQ 91
LP V+ P GD Y I+ + T+EELG+
Sbjct: 176 HLPDPGDMPVNFEQDEPSTKPDFNAGFRTEGDKAYTRIAGPNDDFAIETMEELGFP---- 231
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
+P RGGE+ ALK+L + I+DK++ A F+KPK +P+ + ATT+LSP+L FG LS R
Sbjct: 232 PATTPHRGGETRALKELNKLIADKKYTATFQKPKTNPAQFEPQATTLLSPFLHFGALSVR 291
Query: 152 YFYQCLTDVYQNVKKHTS-PPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPW 208
FY + ++ + K S PP SL+GQLL+RD ++ A G F + N C+ IPW
Sbjct: 292 LFYWRVREIVDSYGKGASTPPESLIGQLLFRDMYFAAQAALGYV-FSQTANNPYCRFIPW 350
Query: 209 --------------------SNDDEL-LAAWREARTGYPWIDAIMVQLRKWGWMHHLARH 247
S + E+ WR TG+PWIDA+M QL+ GW+HHL RH
Sbjct: 351 HLPSKRDSETGLITGEYHIDSEEAEIWFRRWRVGMTGFPWIDALMRQLKDEGWIHHLGRH 410
Query: 248 CVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFG 307
VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF QY R YSP++FG
Sbjct: 411 AVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCTAFFSQYFRCYSPIAFG 470
Query: 308 KKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------YPAPV 358
+K+D GN+IR ++P LK+M +YIYEPW APL Q +A I D YP P+
Sbjct: 471 QKWDKEGNFIRRYVPELKNMDSKYIYEPWKAPLPDQKKAGVRIKGDGLNGTEEGTYPKPM 530
Query: 359 VSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
C + AY + N + DG
Sbjct: 531 FDFAKRRDVCISAMKTAYQVGLHGNDGQALDG 562
>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
Length = 525
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/397 (38%), Positives = 228/397 (57%), Gaps = 24/397 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK---LAGQPLWASSPLP- 58
VK G+ VSHTL+ P +I+ NGG PPLTYQ FL + G P P+P
Sbjct: 114 VKSACREIGVACREYVSHTLWEPDTVIRANGGIPPLTYQMFLHTVTIVGDP---PRPVPD 170
Query: 59 -----VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRES 111
++ +LP + + P E+LG E++ R GGE+ ALK++++
Sbjct: 171 VDMSGITFGTLPDCFYQEFTVFDKTPKPEDLGVF-LENEDIRMIRWVGGETAALKQMQQR 229
Query: 112 ISDKEWV---ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK-H 167
++ + ++ G P P + LSP L+FGCLS R FY + D+++ V +
Sbjct: 230 LAVEHETFRKGSYLPTHGSPDLLGPPIS--LSPALRFGCLSVRSFYWSVQDLFRQVHQGR 287
Query: 168 TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYP 226
S + GQL+WR++FYT++ PN+ +M N IC IPW + + + L W E RTG+P
Sbjct: 288 LSSAHFITGQLIWREYFYTMSVNNPNYGQMADNPICLDIPWKHPEGDELQRWIEGRTGFP 347
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M QLR GW+HH R+ VA FLTRG +++ WE G + F + L+D+DW++ GNW+
Sbjct: 348 FIDAAMRQLRAEGWLHHAVRNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWM 407
Query: 287 WLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+S S+F PV G++ DP+G Y+R ++P + MP +YIYEPW APL +QT
Sbjct: 408 WVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPEIARMPVDYIYEPWKAPLDVQT 467
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQK 381
RA CIIG+ YPAP+V+H A++ + + E + QK
Sbjct: 468 RASCIIGKHYPAPLVNHIVAAQRNRNAMKELRQILQK 504
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
Length = 548
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 222/390 (56%), Gaps = 25/390 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS-- 60
VK G+ VSHTL+ P +I+ NGG PPLTYQ FL P PVS
Sbjct: 114 VKSACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATI--GDPPRPVSDI 171
Query: 61 ------LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESI 112
SLP + + P E+LG E++ R GGE+ ALK++++ +
Sbjct: 172 DFTGVKFGSLPESFYHEFTVYDKTPKPEDLGVF-LENEDIRMIRWVGGETTALKQMQQRL 230
Query: 113 S---DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS 169
+ + ++ G+P P + LSP L+FGCLS R FY + D+++ V +
Sbjct: 231 AVEYETFLRGSYLPTHGNPDLLGPPIS--LSPALRFGCLSVRSFYWSVQDLFRQVHQGRL 288
Query: 170 PPVS----LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTG 224
S + GQL+WR++FYT++ PN+ +M GN IC IPW + + L W E RTG
Sbjct: 289 ATQSASHFITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKEPEGDELQRWVEGRTG 348
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+P++DA M QLR GW+HH AR+ VA FLTRG +++ WE G + F + L+D+DW++ GN
Sbjct: 349 FPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGN 408
Query: 285 WLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTI 342
W+W+S S+F PV G++ DP+G Y+R ++P L MP +YIYEPW AP+ I
Sbjct: 409 WMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEPWKAPIDI 468
Query: 343 QTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
Q RA CIIG+DYPAPVV+H A++ K +
Sbjct: 469 QERATCIIGKDYPAPVVNHLVAAQRNKNAM 498
>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
Length = 691
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 173/482 (35%), Positives = 236/482 (48%), Gaps = 99/482 (20%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV A AG++V V TL++P +I++ NGGKP ++ L+ AG + +
Sbjct: 116 KVMHMAGEAGVKVIVKVGRTLYDPDEIVKNNGGKPTMSITQ-LQHAGNKIGEIEEPVETP 174
Query: 62 SSLPPVGDVGYFEISEV---------------------------------PTVEELGYKG 88
+SLP G++ EI PT+EELG
Sbjct: 175 TSLPDPGEMK-LEIEHTEPEAEPDINAKHREKDTVTFSSGIAGPKGDFSPPTLEELGMPA 233
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
SP +GGES L++L E D+++ F+KPK P+A+ +T + SPYL FG L
Sbjct: 234 ----ATSPHKGGESVVLERLEEMFKDEDYTGTFQKPKTSPAAFEPQSTFLTSPYLHFGAL 289
Query: 149 SSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDFFYTVAFGTP-NFDRMKGNRIC 203
S RYFY + ++ K +SPP SL GQLL+RD ++ F + GN C
Sbjct: 290 SCRYFYHRVAEIVAKRNKEKKPTSSPPESLAGQLLFRDMYFAAQAALGWQFGQTLGNSHC 349
Query: 204 KQIPW--------------------SNDDEL-----------------------LAAWRE 220
+ IPW S + EL L W
Sbjct: 350 RFIPWHLPSKVDMSSKRITGAHEIDSEETELWLQRWTHGITGFPWIDSEETELWLQRWTH 409
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
TG+PWID IM QLR GW+HHLARH VACFLTRG ++ WE+G +VF+ LLID + A
Sbjct: 410 GTTGFPWIDVIMRQLRHEGWIHHLARHSVACFLTRGGCYISWERGLEVFEELLIDHESAC 469
Query: 281 NNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPL 340
N GNW WLSC++FF Q+ R YSPV+FGKK+D NG++IR F+P L PK+YIYEP APL
Sbjct: 470 NIGNWQWLSCTAFFAQFYRCYSPVAFGKKWDENGDFIRKFVPELAHFPKKYIYEPHKAPL 529
Query: 341 TIQTRAKCII--------GRD----YPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSE 388
Q +A + G+D YP P+ + + C R + AY + N +
Sbjct: 530 ADQKKAGVRVDGDGSETKGKDGLALYPKPMFDFNERREICLRGMKAAYRVGLYGNDEKVL 589
Query: 389 DG 390
DG
Sbjct: 590 DG 591
>gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis]
gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis]
Length = 253
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 129/227 (56%), Positives = 167/227 (73%), Gaps = 2/227 (0%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GGE+EAL +L + K WVA+F PK P + L + T LSPYL+FGCLS+R FY L
Sbjct: 28 GGETEALARLERHLERKAWVASFGSPKMTPKSLLA-SQTGLSPYLRFGCLSARLFYHQLA 86
Query: 159 DVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAW 218
D+Y+ +KK ++PP+SL GQLLWR+FFY A PNFDRM N IC QIPW + E LA W
Sbjct: 87 DLYRKIKK-SNPPLSLQGQLLWREFFYCAATRNPNFDRMHNNPICVQIPWDVNAEALAKW 145
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
+TGYPWIDAIM QLR+ GW+HH+AR+ VACFLTRGD+++ WE+G VFD LL+D+DW
Sbjct: 146 ANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRGDLWLSWEEGMKVFDELLLDADW 205
Query: 279 AINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
++N G+W+WLSCSSFF Q+ +Y PV FG+K DP+G++I F +L
Sbjct: 206 SVNAGSWMWLSCSSFFQQFFHLYCPVRFGRKADPSGDFISSFEFILN 252
>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
Length = 520
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 156/394 (39%), Positives = 230/394 (58%), Gaps = 20/394 (5%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP-- 58
+ + A GIEV S VSHTL++P + + G PL + F + Q P+P
Sbjct: 126 LVISHLAKENGIEVISRVSHTLYDPRILRGLSSGIVPLLFDEFKESVLQKRQPEKPVPKV 185
Query: 59 ---VSLSSLPPVGDVGYFEISEVPTVEELGYK----GYGQEELSPFRGGESEALKKLRES 111
+ + + PVG + + VP ++E+G K G EL ++GGESEALK++ +
Sbjct: 186 GRKLFGACVTPVGS-DHQQCYGVPRLDEIGGKFSKSGSVCSEL--YKGGESEALKRMETA 242
Query: 112 ISDKEWVA--NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS 169
+ +W+ +F +P+ + L AT LSPYL+ GCLS R +Q +T+ Y K S
Sbjct: 243 L---QWMVKNDFTEPEITIHSLLXSATH-LSPYLRCGCLSPRLLHQRITEEYIK-SKGVS 297
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229
PP L +LLWR+FF+ V P+ M N I +IPW + E L W++ TG+PWID
Sbjct: 298 PPSELFVKLLWREFFFVVGGQIPDAHEMINNPISLEIPWEDSVEYLERWKKGTTGFPWID 357
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
AIM QLR GW+H++AR VA FLTRG ++V+WE+G VFD +D++ ++N GNWLW+S
Sbjct: 358 AIMRQLRTEGWIHNIARRAVASFLTRGCLWVNWEEGFKVFDEFQLDAERSLNVGNWLWVS 417
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
S+F + PV GKK DP G Y+R ++P ++++P EYI+EPW P +Q C+
Sbjct: 418 TSTFVKGPVPWFCPVGVGKKIDPTGEYVRKYVPEIRNLPTEYIFEPWLTPRDLQRSYGCV 477
Query: 350 IGRDYPAPVVSHDSASKECKRKLGE-AYALNQKL 382
IGRDYPAP+V+H C +++ E A+ L K+
Sbjct: 478 IGRDYPAPIVNHVKQRAICVQRMQELAFKLASKI 511
>gi|346975848|gb|EGY19300.1| cryptochrome-1 [Verticillium dahliae VdLs.17]
Length = 652
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 169/463 (36%), Positives = 240/463 (51%), Gaps = 72/463 (15%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSPLP-- 58
A AG+EV TL++ DI++ NGGKP ++ K + P+ A + LP
Sbjct: 121 AREAGVEVIMRSGRTLWDSDDIVRANGGKPTMSMSQLQKAGSRVGDIPRPVAAPTKLPDP 180
Query: 59 ----VSLSSLPP--------------VGDVGYFEISE------VPTVEELGYKGYGQEEL 94
V P GD GY I+ + T+EELG+
Sbjct: 181 GEMPVDFEQERPNTTPDFNAAQRTAEAGDQGYASIAGPNGDFGIETMEELGFP----SAT 236
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
+P RGGES AL+ L+E + D ++ A F KP+ P+A+ +TT+LSP++ FG LS R FY
Sbjct: 237 TPHRGGESRALETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTLLSPHMHFGSLSVREFY 296
Query: 155 -QCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPW--- 208
Q + V K + PP SL GQLL+RD ++ A G F++ +GN C+ IPW
Sbjct: 297 WQAVDAVKAFGKGASGPPESLTGQLLFRDMYFAAQAALGY-KFEQTRGNAYCRFIPWHLP 355
Query: 209 -----------------SNDDEL-LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
S + +L W+ +TG+PWIDA+M QL + GW+HHL RH VA
Sbjct: 356 SKVNTETGLITGEYHVDSEEADLWFRRWKAGQTGFPWIDALMRQLAEEGWIHHLGRHSVA 415
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKY 310
CFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF QY R YSPVSFG+K+
Sbjct: 416 CFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCAAFFSQYFRCYSPVSFGQKW 475
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------YPAPVVSH 361
D G ++R ++P LKD+ +YIYEPW AP +A +G + YP P+
Sbjct: 476 DKEGLFVRRWVPELKDLDAKYIYEPWKAPKPDLKKAGVKLGGNGLDDREEGTYPKPMFDF 535
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQ 404
+ C +AY + L+G E R F+G + +
Sbjct: 536 NERRTACLAATKKAYGVG--LHGADDEVADGTWRDMFDGVDGE 576
>gi|451847270|gb|EMD60578.1| hypothetical protein COCSADRAFT_244496 [Cochliobolus sativus
ND90Pr]
Length = 654
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 234/457 (51%), Gaps = 74/457 (16%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV + A AG++V + TL++P D+++ N GKP ++ A + P+P
Sbjct: 116 KVMEIAKQAGVDVITKTGRTLYDPDDLVKNNNGKPTMSMAQVQAAAKKIGPVPRPIPAP- 174
Query: 62 SSLPPVGDV-------------------------GYFEIS------EVPTVEELGYKGYG 90
SLP G+V Y ++ VPT+E+LG K
Sbjct: 175 KSLPDPGEVHLQFDQEKPESHPDINSIQRDGNEASYTALAGPNGDFAVPTMEDLGLK--- 231
Query: 91 QEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSS 150
+P RGGE+ AL+ L + I+D+E+ A FEKP P+A+ +TT+LSP++ FG LS
Sbjct: 232 -LATTPHRGGETVALQALDKIIADEEYTATFEKPNTAPTAFEPQSTTLLSPHMHFGSLSC 290
Query: 151 RYFYQCLTDVYQNVKKHTS-PPVSLVGQLLWRDFFY--TVAFGTPNFDRMKGNRICKQIP 207
R FY DV K S PP SL GQLL+RD ++ + G +F + N C+ IP
Sbjct: 291 RLFYWRAQDVADKYKGRASQPPTSLTGQLLFRDMYFGAQASLGY-SFGQTYNNSHCRFIP 349
Query: 208 W---------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
W + + W++ RTG+PWIDA+M QL + GW+HHL R
Sbjct: 350 WHLPSKVDTSSSLITGEYTIDNAEAESHFQRWKQGRTGFPWIDALMRQLAQEGWIHHLGR 409
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
H VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF Q+ R YSPV+F
Sbjct: 410 HAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQFYRCYSPVAF 469
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD------------- 353
+K+D GN+IR ++P L K+YIYEP AP+ Q + C+I D
Sbjct: 470 PQKWDKEGNFIRRYVPELAKFDKKYIYEPHKAPIADQKKWGCLIKGDGTAGSGVDGALKT 529
Query: 354 YPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
YP P+ + C + + AY +N N DG
Sbjct: 530 YPKPMFDFPTRRDICLQGMKNAYRVNLYGNSPQVLDG 566
>gi|451997801|gb|EMD90266.1| hypothetical protein COCHEDRAFT_1139413, partial [Cochliobolus
heterostrophus C5]
Length = 650
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 164/458 (35%), Positives = 238/458 (51%), Gaps = 82/458 (17%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV + A AG++V + TL++P D+++ N GKP ++ A + P+P
Sbjct: 116 KVMEIAKQAGVDVITKTGRTLYDPDDLVKNNNGKPTMSMAQVQAAAKKIGPVPRPIPAP- 174
Query: 62 SSLPPVGDVGYFEISE--------------------------------VPTVEELGYKGY 89
+LP G+V + E + VPT+EELG K
Sbjct: 175 KTLPDPGEV-HLEFDQEKPESQPDINSIQRDGKEASYTALAGPNGDFAVPTMEELGLK-- 231
Query: 90 GQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
+P RGGE+ AL+ L + I+++++ A FEKP P+A+ +TT+LSP++ FG LS
Sbjct: 232 --PATTPHRGGETIALQALDKIIANEKYTATFEKPNTAPTAFEPQSTTLLSPHMHFGSLS 289
Query: 150 SRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFY--TVAFGTPNFDRMKGNRICKQI 206
R FY DV K K + PP SL GQLL+RD ++ + G +F + N C+ I
Sbjct: 290 CRLFYWRAQDVADKYKGKASQPPTSLTGQLLFRDMYFGAQASLGY-SFGQTYNNSHCRFI 348
Query: 207 PWSNDDELLAA---------------------WREARTGYPWIDAIMVQLRKWGWMHHLA 245
PW ++ A+ W++ RTG+PWIDA+M QL + GW+HHL
Sbjct: 349 PWHLPSKIDASSGLITGEYTIDNAEAESHFQRWKQGRTGFPWIDALMRQLAQEGWIHHLG 408
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
RH VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF Q+ R YSPV+
Sbjct: 409 RHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQFYRCYSPVA 468
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD------------ 353
F +K+D GN+IR ++P L K+YIYEP AP+ Q + C+I D
Sbjct: 469 FPQKWDKEGNFIRRYVPELAKFDKKYIYEPHKAPIADQKKWGCLIKGDGTAGSGADDGLQ 528
Query: 354 -YPAPVVSHDSASKECKRKLGEAYALN------QKLNG 384
YP P+ + C + + AY +N Q LNG
Sbjct: 529 TYPKPMFDFPTRRDICLKGMKNAYRVNLYGNSPQVLNG 566
>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
Length = 308
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/282 (49%), Positives = 187/282 (66%), Gaps = 6/282 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS AG+EV +SHTL++ II+ NGG+ PLTY+ F L + P +
Sbjct: 29 IKKLASEAGVEVTVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMDAVEVPAESITA 88
Query: 63 SLPPVGDVGYFEISE----VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+ E + VP++EELG+ G + + GGE+EAL +L + K WV
Sbjct: 89 EIMGKCTTPLSEDHDDKFGVPSLEELGFDTEGLSS-AVWPGGETEALTRLERHLERKAWV 147
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
ANFE+P+ + ++ L + T LSPY +FGCLS R FY LTD+Y+ VKK++SPP+SL GQL
Sbjct: 148 ANFERPRMNANSLLA-SPTGLSPYPRFGCLSCRLFYFKLTDLYRKVKKNSSPPLSLYGQL 206
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYT A P FD+M+ N IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 207 LWREFFYTAATNNPCFDKMESNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 266
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++
Sbjct: 267 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSV 308
>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
Length = 613
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 169/463 (36%), Positives = 234/463 (50%), Gaps = 81/463 (17%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA--------GQPLWASSPLP 58
A AG+EV + TLF+P ++++KNGGKP ++ K A QPL A +P
Sbjct: 120 ARDAGVEVIVQMGRTLFDPDELVRKNGGKPTMSIAQVQKAAEKIGDGTPAQPLEAPQSVP 179
Query: 59 -------VSLSSL--------PPVG-------DVGYFEIS------EVPTVEELGYKGYG 90
+ L L P + DV Y + VPT+EE+G G
Sbjct: 180 DPWKWEKMGLDGLGQDVVDARPDLNAPYRTSSDVQYSALMGPGRDFAVPTMEEIGIDG-- 237
Query: 91 QEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSS 150
SP RGGE+ AL+ L I D E+V FEKPK P+A+ ATT+LSP+L FG LS
Sbjct: 238 SLARSPHRGGETAALRVLAGYIQDGEYVGTFEKPKTSPAAFEPQATTLLSPHLHFGSLSV 297
Query: 151 RYFYQCLTDVYQNVKK----HTSPPVSLVGQLLWRDFFYTVAFGTPN-FDRMKGNRICKQ 205
R F+ + V Q +K + S P +L GQLL+RD ++ + F + GN+ +
Sbjct: 298 RKFWWDVQGVLQQRRKQKKANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRF 357
Query: 206 IPW------------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
I W S + W+E RTG+PWIDA+M QL+ GW+
Sbjct: 358 IDWHLPTNYITTEEGKYQPDGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWI 417
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHL RH VACFLTRG +V WE+G +VF+ L+D + A N GNW WLSC++F+ QY Y
Sbjct: 418 HHLGRHSVACFLTRGGCYVSWERGAEVFEDWLVDHETACNVGNWQWLSCTAFYSQYYHCY 477
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD-------- 353
SP++FGKK+DP G ++R + P L + K+YIYEPW APL Q + C + D
Sbjct: 478 SPIAFGKKWDPEGEFVRRYCPELANFDKKYIYEPWKAPLPDQKKWGCRVTGDGSGSDDSK 537
Query: 354 ------YPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
YP P+ D + C + AY++ + DG
Sbjct: 538 HEGLAVYPKPMFDFDERRRICLDGMKHAYSIGLHGDDPEVRDG 580
>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
Length = 604
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 171/439 (38%), Positives = 231/439 (52%), Gaps = 66/439 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA---GQ---PLWASSP 56
V A AG+EV TL++ +I+ + GKP ++ L A GQ P+ A
Sbjct: 108 VAKAAKEAGVEVVIRSGRTLWDSDEIVAHHDGKPTMSMTQLLSAAKKVGQVPRPIAAPKG 167
Query: 57 LP----VSL-------SSLPPVG-------DVGYFEIS------EVPTVEELGYKGYGQE 92
LP + L S+ P V D Y I+ + T+EELG+
Sbjct: 168 LPDPGDMPLDFEQHVPSNAPDVNAQAREKKDTAYKSIAGPKGDFAIETLEELGFPA---- 223
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+P+RGGES ALK L E I +K++ A FEKPK P+ + +TT+LSP+L FG LS R
Sbjct: 224 ATTPYRGGESIALKDLAEIIENKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSVRE 283
Query: 153 FYQCLTDVYQNVKKHTS-PPVSLVGQLLWRDFFYTV-AFGTPNFDRMKGNRICKQIPW-- 208
FY + DV + K S PP SL GQL++RD ++ A F + GN C+ IPW
Sbjct: 284 FYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQTAGNPYCRFIPWHL 343
Query: 209 ------------------SNDDEL-LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCV 249
S+D E W+ TG+PWIDA+M QL GWMHHL RH V
Sbjct: 344 PSERDSQTGLVTDKYKVDSDDAEKWFQRWKRGVTGFPWIDALMRQLVHTGWMHHLGRHSV 403
Query: 250 ACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKK 309
ACFLTRG +V WE+G +VF+ L+D + A N GNW WLSC++FF QY R YSPVSFG+K
Sbjct: 404 ACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLSCTAFFSQYFRCYSPVSFGQK 463
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------YPAPVVS 360
+D NG+ IR ++P LK++ +YIYEPW AP+ Q +A + D YP P+
Sbjct: 464 WDKNGDLIRKWVPELKNLDSKYIYEPWKAPIQDQKKAGVRVVGDGLDDQEQGTYPKPMFD 523
Query: 361 HDSASKECKRKLGEAYALN 379
+ C + AY +
Sbjct: 524 FGKRRETCINAMKIAYGVG 542
>gi|392574712|gb|EIW67847.1| hypothetical protein TREMEDRAFT_21150, partial [Tremella
mesenterica DSM 1558]
Length = 548
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/429 (36%), Positives = 223/429 (51%), Gaps = 57/429 (13%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
+K A G+ V LF+P + + NGGKP +T Q + + QP +
Sbjct: 114 IKRLAKEKGVVVVDVPGRHLFDPDLVGRMNGGKPTMTLQQWQNITKKIGKVEQPSLTPTI 173
Query: 57 LP------------------VSLSSLPPVGDVGYFE-------ISEVPTVEELGYKGYGQ 91
LP V L++ G F+ VPT+ ++GY
Sbjct: 174 LPDPGETTLRYSRKVYKWDKVDLNAHLRTGKDTCFDHFTGPEGDFSVPTLSQMGYP---- 229
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
+ RGG ++A +L +S + VA F KP P+A L+P+TT+LSPYLKFGC+ R
Sbjct: 230 PSTTSIRGGTTQAHLRLNTFLSHPQAVATFSKPHTAPTA-LEPSTTLLSPYLKFGCVGVR 288
Query: 152 YFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW-- 208
+ V + K + T P ++ GQL +RD + P+F+R++GN +C+ I W
Sbjct: 289 EIWWGCKRVVEAYKGEKTKEPENMFGQLEFRDMYACAEALQPHFERIRGNSVCRYIDWGL 348
Query: 209 ------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
D+ AWRE TG+PWIDA M QL+ GW+HHLARH VA
Sbjct: 349 QNQYDEQGREILPRPRGKEEDERRFEAWREGCTGFPWIDACMRQLKSEGWIHHLARHSVA 408
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKY 310
CFLTRG ++ WE+G +VFD LID D A N GNW+WLSCS+FF QY R+Y VS+ +K
Sbjct: 409 CFLTRGQCYISWERGMEVFDEWLIDWDPASNPGNWMWLSCSAFFSQYYRVYGLVSWPQKT 468
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKR 370
D G +R + P L+ P +YIY P TAPL++Q A C+IG+DYP P++ + C
Sbjct: 469 DKTGALVRKYCPELEKFPDKYIYAPHTAPLSVQEAAGCVIGQDYPLPILDERAEKDRCLA 528
Query: 371 KLGEAYALN 379
++ AY L
Sbjct: 529 RIKNAYQLG 537
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
Length = 536
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 219/385 (56%), Gaps = 18/385 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
VK G+ VSHTL+ P +I+ NGG PPLTYQ FL +P+ +
Sbjct: 114 VKTACREIGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVDNAKL 173
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKLRESIS- 113
+ +LP + +VP E+LG E++ R GGE+ ALK+++ ++
Sbjct: 174 RGIKFGTLPLCFYEEFTVYDKVPNPEDLGVF-LENEDIRMIRWVGGETAALKQMQHRLAV 232
Query: 114 --DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
+ ++ G P P + LSP L+FGCLS R FY L D++Q V + +
Sbjct: 233 EYETFCRGSYLPTHGSPDLLGPPIS--LSPALRFGCLSVRKFYWSLQDLFQQVHQGSLCS 290
Query: 172 VS-LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW-SNDDELLAAWREARTGYPWID 229
+ GQL+WR++FYT++ P++ +M N IC IPW S + + L W RTG+P++D
Sbjct: 291 TQYITGQLIWREYFYTMSVNNPHYGQMTDNPICLDIPWKSPEGDELERWASGRTGFPFVD 350
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
A M QLR GW+HH R+ VA FLTRG +++ WE G F + L+D+DW++ GNW+W+S
Sbjct: 351 AAMRQLRLEGWLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLLDADWSVCAGNWMWVS 410
Query: 290 CSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
S+F PV G++ DP+G Y+R ++P L +P EYIYEPW APL +Q RA
Sbjct: 411 SSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARVPTEYIYEPWKAPLDVQERAN 470
Query: 348 CIIGRDYPAPVVSHDSASKECKRKL 372
CIIG+DYPAPVV+H A++ + +
Sbjct: 471 CIIGKDYPAPVVNHIVAAQRNRNAM 495
>gi|425767796|gb|EKV06352.1| DNA photolyase, putative [Penicillium digitatum Pd1]
gi|425769478|gb|EKV07970.1| DNA photolyase, putative [Penicillium digitatum PHI26]
Length = 604
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/484 (35%), Positives = 249/484 (51%), Gaps = 74/484 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA--------GQPLWAS 54
V A AG+EV + TLF+P D+++KN GKP ++ K A +PL +
Sbjct: 122 VMRLAQKAGVEVIVKMGRTLFDPDDVVRKNNGKPTMSITQLEKAAVKINNGNPEKPLDSP 181
Query: 55 SPLP-------VSLSSLP-------PVGDVGYFEISEVPTVEELG--------YKGYG-- 90
+ +P + LSSL P + Y ++ + +G ++ G
Sbjct: 182 NSIPDPWDEERMDLSSLKRESIENRPDLNAEYRTKTDEQFADLMGPSRDFAVPWQDIGID 241
Query: 91 -QEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
+ +P RGGE EAL+ L E I +++++ FEKP P+ + +TT+LSP+L FG LS
Sbjct: 242 LSQATTPHRGGEQEALRILGECIKNEDYIGRFEKPNTSPADFEPQSTTLLSPHLHFGSLS 301
Query: 150 SRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFYTVAFGTPN-FDRMKGNRICK 204
R F+ + V +K P P +L GQLL+RD ++ + F R GN I +
Sbjct: 302 VRKFWWDVEGVLNKHRKAKKPVSTVPTNLPGQLLFRDMYFAAQAPLGHAFSRTYGNEIAR 361
Query: 205 QIPW-------SND--------------DELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
I W S D +E W++ RTG+PWIDA+M QLR+ GW+HH
Sbjct: 362 FIDWHLQTNPPSQDGSIEGSYEVDSQEAEEWFQRWKDGRTGFPWIDALMRQLRQEGWIHH 421
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
L RH VACFLTRG +V WE+G VF+ LLID + A N GNW+WLSC++FF Q+ R YSP
Sbjct: 422 LGRHSVACFLTRGGCYVSWERGAAVFEELLIDHEVACNVGNWMWLSCTAFFAQFYRCYSP 481
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG------------ 351
++FGKK+DP G+ IR + P L K++IYEPW AP+ Q R C I
Sbjct: 482 IAFGKKWDPEGSLIRKYCPELAKFDKKHIYEPWKAPIADQKRWGCRITGDGSSSGSLDSE 541
Query: 352 RDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQK 411
YP P+ + + C + AY + N +DG + ++ F G++ +E+G +
Sbjct: 542 HTYPKPMFDFNKRRETCLAGMKHAYGVGLHGNDTKVKDG--SWKKDF-GDDGEEAGDSRP 598
Query: 412 QKTL 415
K L
Sbjct: 599 AKRL 602
>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 166/454 (36%), Positives = 231/454 (50%), Gaps = 74/454 (16%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V A AG+EV TL++ I++K+GGKP ++ + + P+P
Sbjct: 117 VTRAAKEAGVEVIVRTGRTLWDSDQIVEKHGGKPTMSITQLQQAGARLGEVRKPIPAP-K 175
Query: 63 SLPPVG-------------------------DVGYFEIS------EVPTVEELGYKGYGQ 91
LP G D Y +I+ + T+EELG+
Sbjct: 176 HLPDPGEMPVDFEQEQPKTKPDFNSEQRTEKDQTYTKIAGPNGDFAIETMEELGFPS--- 232
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
+P RGGE+ AL+ L + I+DK++ A FEKPK P+ + +TT+LSP+L FG LS R
Sbjct: 233 -ATTPHRGGETLALEALDKIIADKKYTAKFEKPKTSPARFEPQSTTLLSPFLHFGALSVR 291
Query: 152 YFY---QCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQI 206
FY Q + D Y K ++PP SL+GQLL+RD ++ A G +K N C+ I
Sbjct: 292 EFYWRVQEVVDAYG--KGASTPPESLIGQLLFRDMYFAAQAALGDVFMQTVK-NPHCRFI 348
Query: 207 PW---------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
PW D W+ TG+PWIDA+M QL++ GW+HHL
Sbjct: 349 PWHLPSKRDPKTGLVTGEYHVDSEEADIWFKRWKTGMTGFPWIDALMRQLKEEGWIHHLG 408
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
RH VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF QY R YSPVS
Sbjct: 409 RHAVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCTAFFSQYFRCYSPVS 468
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------YPA 356
FG+K+D G++IR ++P LK+M +YIYEPW APL Q +A + D YP
Sbjct: 469 FGQKWDKQGDFIRRYVPELKNMDAKYIYEPWKAPLPDQKKAGVRVKGDGLNDVQEGTYPK 528
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
P+ C + AY + N + DG
Sbjct: 529 PMFDFSKRRDACLAAMKTAYKVGLHGNDEKVLDG 562
>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
Length = 655
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 168/467 (35%), Positives = 243/467 (52%), Gaps = 83/467 (17%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-S 60
KV + A AG+EV TL++P +++ +N GKP ++ ++ AG+ + P P+ +
Sbjct: 116 KVLEIAKKAGVEVVVKTGRTLYDPDELVMQNHGKPTMSITQ-VQAAGKKI-GRIPRPIPA 173
Query: 61 LSSLPPVGDV-------------------------GYFEIS------EVPTVEELGYKGY 89
S+P GD Y ++ VPT+EELG K
Sbjct: 174 PKSIPNPGDTDLKFDQERPESQPDVNAIQRDGHEASYTALAGPNSDFAVPTMEELGLK-- 231
Query: 90 GQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
+ RGGE+EAL+ L E I+++E+ A FEKPK P+A+ +TT+LSP++ FG LS
Sbjct: 232 --PATTAHRGGETEALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLS 289
Query: 150 SRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFY--TVAFGTPNFDRMKGNRICKQI 206
R FY DV K K + PPVSL GQLL+RD ++ A G +F + N C+ I
Sbjct: 290 CRLFYWRAQDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAALGY-SFGQTYNNPNCRFI 348
Query: 207 PW---------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
PW + + W+ +TG+PWIDA+M QL + GW+HHL
Sbjct: 349 PWHLPSKIDTKSGLITGEYMVDNAEAETHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLG 408
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
RH VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF Q+ R YSP++
Sbjct: 409 RHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQFYRCYSPIA 468
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD-----------Y 354
F +K+D G ++R ++P L K+YIYEP AP+ Q + C+I D Y
Sbjct: 469 FPQKWDKEGEFVRKYVPELARFDKKYIYEPHKAPIVDQKKWGCLIKGDGLAAAEGSMKTY 528
Query: 355 PAPVVSHDSASKECKRKLGEAYALN------QKLNG---QVSEDGLK 392
P P+ C + AY +N Q L+G ++ EDG K
Sbjct: 529 PKPMFDFAQRRDICLAGMKNAYHVNLYGNSPQVLDGSWREMFEDGAK 575
>gi|358394356|gb|EHK43749.1| DNA photolyase [Trichoderma atroviride IMI 206040]
Length = 625
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 234/453 (51%), Gaps = 72/453 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW-ASSPLPVSL 61
V A AG++V TL++ I++K+GGKP ++ L+ AG+ + + PLP
Sbjct: 117 VAKAAQEAGVKVIIRSGRTLWDSDGIVEKHGGKPTMSITQ-LQAAGKKIGPVAKPLPAP- 174
Query: 62 SSLPPVGDV-------------------------GYFEIS------EVPTVEELGYKGYG 90
P GD+ GY I+ + T+EELG+
Sbjct: 175 ERFPDPGDMPVDFEQHVPDKHPDFNAGYRSEKDTGYNAIAGPNGDFAIETLEELGFA--- 231
Query: 91 QEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSS 150
+P RGGES ALK L I +K + A FEKPK P+ + +TT+LSP+ FG LS
Sbjct: 232 -PATTPHRGGESIALKTLDGLIKNKRYTATFEKPKTSPAQFEPQSTTLLSPFFHFGALSV 290
Query: 151 RYFYQCLTDVYQNVKKHTS-PPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIP 207
R FY + +V ++ K S PP SL+GQ+L+RD ++ A G +F + N C+ IP
Sbjct: 291 RLFYWRVHEVVESYGKGASTPPASLIGQVLFRDMYFAAQAALGQ-SFAQTATNAYCRFIP 349
Query: 208 WS---------------------NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
W +E W+ TG+PWIDA+M QL++ GW+HHL R
Sbjct: 350 WHLPSKRDPETGFATGDYHIDKPKAEEWFQRWKAGVTGFPWIDALMRQLKQEGWIHHLGR 409
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
H +ACFLTRG +V WE+G +VF+ LLID + A N GNW WL+C +FF QY R YSPVSF
Sbjct: 410 HSLACFLTRGGCYVDWERGAEVFEELLIDHEPACNIGNWQWLACVAFFAQYYRCYSPVSF 469
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG---------RDYPAP 357
G+K+D NG++IR ++P LK + +YIYEPW PL Q +A + YP P
Sbjct: 470 GQKWDKNGDFIRRWVPELKKVKAKYIYEPWKMPLVDQKQAGVRVTGGGLSERQEGSYPKP 529
Query: 358 VVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
+ D C + AYA+ N + DG
Sbjct: 530 MFDFDERRSICLSAMKNAYAVGLHGNDEKVLDG 562
>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
Length = 542
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 220/392 (56%), Gaps = 37/392 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ GIE VSHTL+NP +I+ NGG PPLTYQ FL ++ G P P PV
Sbjct: 121 IRSLCHELGIEFVEKVSHTLWNPQSVIETNGGIPPLTYQMFLHTVQILGLP-----PRPV 175
Query: 60 SLSSLPPVG----------DVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKK 107
+ + L ++GY E ++PT E G LS R GGE +AL
Sbjct: 176 NDARLEDASFVQMDPELLRNLGYLE--QIPTPEHFNVYGDNMGFLSKIRWRGGERQALLL 233
Query: 108 LRESISDKEWVANFEKPKGDPSAYL---KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L E + ++ FEK P+ L + +SP+L+FGCLS R FY + D+++NV
Sbjct: 234 LDERLKVEQ--HAFEKGYYMPNQALPNIQETPKSMSPHLRFGCLSVRRFYWSVHDLFKNV 291
Query: 165 K-------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDEL-LA 216
+ + + GQL+WR++FYT++ PN+DRM GN IC IPW+ DE L
Sbjct: 292 QLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMDGNEICLSIPWAKRDETQLQ 351
Query: 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS 276
WR +TG+P IDA M QL GW+HH+ R+ VA FLTRG ++ WE G F R L+D+
Sbjct: 352 KWRLGQTGFPLIDAAMRQLLAEGWLHHVLRNTVATFLTRGGLWQSWEHGVQHFLRYLLDA 411
Query: 277 DWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYE 334
DW++ GNW+W+S S+F + + PV+ K+ DP+G YIR ++P LK++P+E+I+E
Sbjct: 412 DWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGAYIRQYVPELKNVPREFIHE 471
Query: 335 PWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
PW L Q + +C+IG YP ++ A K
Sbjct: 472 PWRMNLQQQEQYECLIGVHYPDRLIDLSKAVK 503
>gi|340518659|gb|EGR48899.1| DNA photolyase [Trichoderma reesei QM6a]
Length = 628
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 166/450 (36%), Positives = 236/450 (52%), Gaps = 73/450 (16%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW-ASSPLPVSLSSLP 65
A AG+EV + TL++ +I+ + GKP +T + L+ AG+ + + P+P SLP
Sbjct: 121 AKEAGVEVITRSGRTLWDSDEIVAHHDGKPTMTIAA-LQAAGKKIGPVAKPIPAP-KSLP 178
Query: 66 PVGDV-------------------------GYFEIS------EVPTVEELGYKGYGQEEL 94
GD+ Y IS + T+EELG+
Sbjct: 179 DPGDMPVDFEQHRPDPKPDINESHKTREDTAYKHISGPNGDFAIETLEELGFA----PAT 234
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
+P RGGE+ AL++L E I DK ++A F+KPK P+ + PATT+LSP+ FG LS R FY
Sbjct: 235 TPIRGGETLALERLDELIKDKTYIATFKKPKTSPAQFDPPATTLLSPFFHFGALSVRLFY 294
Query: 155 QCLTDVYQNVKK-HTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPW--- 208
+ +V + +SPP SL+GQ+L+RD ++ A G +F + N C+ +PW
Sbjct: 295 HRVQEVIDSFGPGASSPPESLIGQVLFRDMYFAAQAALGA-SFAQTATNPYCRFVPWHLP 353
Query: 209 ----------SNDDEL--------LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
+ D + W+ TG+PWIDA+M QLR GW+HHL RH VA
Sbjct: 354 SKRDPHTGLTTGDHHIDSDQAETWFRRWKAGTTGFPWIDALMRQLRHDGWIHHLGRHSVA 413
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKY 310
CFLTRG +V WE+G +VF+ LL+D + A N GNW WLSC +FF QY R+YSPVSFG+K+
Sbjct: 414 CFLTRGGCYVDWERGAEVFEELLLDHEPACNIGNWQWLSCVAFFAQYYRVYSPVSFGQKW 473
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD----------YPAPVVS 360
D +G IR ++P L+++ +YIYEPW PL Q A I D YP P+
Sbjct: 474 DRDGALIRRWVPELRNVKPKYIYEPWKMPLPDQKAAGVRITGDGLEEQHDEGTYPKPMFD 533
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDG 390
C + AY++ N + DG
Sbjct: 534 FSERRGICIGAMKNAYSVGLHGNDEQVLDG 563
>gi|396460940|ref|XP_003835082.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
gi|312211632|emb|CBX91717.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
Length = 709
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 171/460 (37%), Positives = 238/460 (51%), Gaps = 82/460 (17%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLKLAGQ---PLWASS 55
+V + A TAG+EV TL++P +++++N GKP ++ Q+ K GQ P+ A
Sbjct: 162 QVMELAKTAGVEVVVKTGRTLYDPDELVRQNHGKPTMSINQVQAAGKKIGQIPRPIPAPK 221
Query: 56 PLP-----------------------------VSLSSLP-PVGDVGYFEISEVPTVEELG 85
LP S SSL P GD VPT++ELG
Sbjct: 222 SLPGPGKVDFDFHQEKPSNSPDINDAQRNTDEASYSSLAGPNGDFA------VPTMKELG 275
Query: 86 YKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKF 145
K S RGGE+ AL+ L + I+++E+ A FEKPK P+A+ ATT+LSP+L F
Sbjct: 276 LK----LATSTHRGGETLALEALEKIIANEEYTATFEKPKTAPTAFEPQATTLLSPHLHF 331
Query: 146 GCLSSRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFY--TVAFGTPNFDRMKGNRI 202
G LS R FY + DV K K + PP SL GQLL+RD ++ A G +F + N
Sbjct: 332 GSLSCREFYWRVQDVVDRFKGKASQPPTSLTGQLLFRDMYFGAQAALGY-SFSQTYNNPQ 390
Query: 203 CKQIPWS------------------NDDEL---LAAWREARTGYPWIDAIMVQLRKWGWM 241
C+ IPW +D E W+E TG+PWIDA+M QL++ GW+
Sbjct: 391 CRFIPWHLPSKIDIKSSMTTGEYLVDDAEAEIHFKRWKEGCTGFPWIDALMRQLKREGWI 450
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHL RH VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF Q+ R Y
Sbjct: 451 HHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQFFRCY 510
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII----------- 350
SP++F +K+D G +++ ++P L K+YIYEPW AP+ Q + C I
Sbjct: 511 SPIAFPQKWDKEGEFVKRYVPELAKFDKKYIYEPWKAPIADQKKWGCRIEGDGLSVAKGE 570
Query: 351 GRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
G YP P+ + C + AY + N DG
Sbjct: 571 GETYPKPMFDFPTRRDICLDGMKNAYHVGLYGNDPKVIDG 610
>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
gi|122106526|sp|Q17DK5.1|CRY1_AEDAE RecName: Full=Cryptochrome-1
gi|108880271|gb|EAT44496.1| AAEL004146-PA [Aedes aegypti]
Length = 545
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 225/393 (57%), Gaps = 41/393 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK---LAGQPLWASSPLPV 59
+++ ++ VSHTL++P II+ NGG PPLTYQ FL + G+P P PV
Sbjct: 119 IQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKP-----PRPV 173
Query: 60 SLSSLPPVGDVGYFEISEVPTV---------------EELGYKGYGQEELS--PFRGGES 102
+ S + E +P++ E+ G G ++S + GGE+
Sbjct: 174 AAPSFE------FVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGET 227
Query: 103 EALKKLRESISDKE--WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160
+AL+ L + +E ++ + P +L P T+ +S L+FGCLS R FY C+ D+
Sbjct: 228 KALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVPPTS-MSAALRFGCLSVRMFYWCVHDL 286
Query: 161 YQNVK---KHTSPP-VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELL 215
Y+ V+ ++ +P + GQL+WR++FYT++ P++ M+ N IC IPW D+ L
Sbjct: 287 YEKVQANNQYRNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDDSL 346
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
W+E RTG+P IDA M QL GW+HH+ R+ A FLTRG +++ WE G F + L+D
Sbjct: 347 DRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLD 406
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + SP++ ++ DP G Y+R +LP LK++P Y++
Sbjct: 407 ADWSVCAGNWMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVH 466
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
EPW APL +Q CI+GRDYPAP++ +AS+
Sbjct: 467 EPWKAPLDVQKECGCIVGRDYPAPMIDLAAASR 499
>gi|389622365|ref|XP_003708836.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|351648365|gb|EHA56224.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|440473506|gb|ELQ42297.1| cryptochrome-1 [Magnaporthe oryzae Y34]
gi|440489726|gb|ELQ69353.1| cryptochrome-1 [Magnaporthe oryzae P131]
Length = 679
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/416 (37%), Positives = 218/416 (52%), Gaps = 68/416 (16%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
VK A AG++V + TL++ I++ NGG+P ++ + + P+P +
Sbjct: 117 VKKAAQAAGVKVITRYGRTLWDSDAIVKANGGEPTMSMARLRTVGAKVGSIPRPIPAPKA 176
Query: 63 -------------SLPPVG------------DVGYFEIS------EVPTVEELGYKGYGQ 91
LP VG + Y I+ + T+EELGY
Sbjct: 177 LPDPGEMPLDFNLDLPDVGQDYNAKWRSEGKEKAYGAIAGPNGDFAIETLEELGYP---- 232
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
+P++GGES AL++L I ++ + A F KP+ P+A+ +TT+LSP + FG LS R
Sbjct: 233 PATTPYKGGESLALRELDAIIENQVYTATFRKPQTSPAAFEPQSTTLLSPAMHFGSLSVR 292
Query: 152 YFY---QCLTDVYQNVKKHTS--PPVSLVGQLLWRDFFYTV-AFGTPNFDRMKGNRICKQ 205
FY Q D Y KK + PP SL GQLL+RD ++ A P F + GN C+
Sbjct: 293 LFYHRVQDTVDAYNQAKKKGASLPPESLTGQLLFRDMYFAAQAAIGPCFSQTAGNAHCRF 352
Query: 206 IPW-------------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
IPW + W +TG+PWIDA+M QLR GW
Sbjct: 353 IPWHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEAGQTGFPWIDALMRQLRVEGW 412
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHL RH VACFLTRG +V WE+G DVF+ LL+D + A N GNW WLSC++FF QY R
Sbjct: 413 IHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPACNAGNWQWLSCTAFFSQYFRC 472
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII--GRDY 354
YSP+SFGKK+DP+G +IR ++P L + K+YIYEPW AP RA ++ G D+
Sbjct: 473 YSPISFGKKWDPDGTFIRKWVPELASLDKKYIYEPWKAPEAELRRAGVVMVSGHDF 528
>gi|361124167|gb|EHK96280.1| putative Cryptochrome-2 [Glarea lozoyensis 74030]
Length = 586
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/388 (40%), Positives = 217/388 (55%), Gaps = 61/388 (15%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-SLSSLP 65
A AG+EV TL++ ++++KNGG +T ++ AG P P P+ + S+P
Sbjct: 70 AKEAGVEVIVKSGRTLWDSDELVKKNGGNATMTITQ-VQTAG-PKVGPVPRPIPAPKSIP 127
Query: 66 PVG-------------------------DVGYFEIS------EVPTVEELGYKGYGQEEL 94
G D Y IS VP++EELG Q
Sbjct: 128 DPGELELHFEQEQPTSKPDFNSGPRRHDDKSYENISGPNGDFAVPSLEELGM----QPAT 183
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
+ RGGES ALK L + I+DK++ A FEKPK P+ + ATT+LSP+L FG LS R FY
Sbjct: 184 TKHRGGESLALKALSKIIADKKYTATFEKPKTAPTDFEPQATTLLSPHLHFGSLSIREFY 243
Query: 155 QCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFYTV-AFGTPNFDRMKGNRICKQIPWS--- 209
+ D + K K + PPVSL+GQL +RD ++ A G + + N C+ IP+S
Sbjct: 244 WQVQDTIASYKGKSSEPPVSLLGQLYFRDMYFGAQAAGGWYYAQTINNPHCRFIPFSLPA 303
Query: 210 ------------------NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
+E W+ TG+PWIDA+M QLR GW+HHL RH VAC
Sbjct: 304 KIDPDTKLITGEFQSTDSQAEEWFVRWKYGLTGFPWIDALMRQLRLEGWIHHLGRHAVAC 363
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYD 311
FLTRG F+HWE+G +VF+ LID + A N GNW WLSC++F+ Y R+YSP++FG+K+D
Sbjct: 364 FLTRGGCFIHWERGAEVFEEWLIDHEVASNVGNWQWLSCTAFYSMYYRMYSPIAFGQKWD 423
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
P G ++R+F+P LKD+ ++YIYEPW AP
Sbjct: 424 PEGKFVRNFVPELKDLDRKYIYEPWKAP 451
>gi|443894766|dbj|GAC72113.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 685
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 168/487 (34%), Positives = 240/487 (49%), Gaps = 87/487 (17%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
+++ A + IEV + H LF+P ++ ++N GKP + + K+ +PL A
Sbjct: 118 IREAAKKSKIEVVAVQGHHLFDPEEVAKRNKGKPTMAMSTLQKIVSDMGDVPKPLDAPKD 177
Query: 57 LPV--------------------SLSSLPPVGDVG------------------------- 71
LPV SL LP G
Sbjct: 178 LPVPQLKDSKSKTLKDLLAELADSLDGLPHYTGKGREGPASVDLNSTELGGQRDKEVTCY 237
Query: 72 ------YFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPK 125
E+ VPT+E +G ++ +GGE AL+KL + D E+VA F KPK
Sbjct: 238 NTVNGEAAELFAVPTLESIGMDASKGKDT--IKGGEPLALEKLAKICKDAEYVATFAKPK 295
Query: 126 GDPSAYLK-PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK--KHTSPPVSLVGQLLWRD 182
P + P+TT+LSPYLKFGCLS R + + + K T PP +L GQLL+RD
Sbjct: 296 TSPGQSAEDPSTTLLSPYLKFGCLSVRKLWWDAEEAKKKYKGGSKTGPPENLNGQLLFRD 355
Query: 183 FFYTV--AFGTPNFDRMKGNRICKQIPW--------------------SNDDELLAAWRE 220
+ A G +F R++GN +C+ + W + + L+A++
Sbjct: 356 MYACAEHAIGD-DFQRVRGNEVCRYMDWYLPTHYDKNGEVILPRPPGDAVSEARLSAFKL 414
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
+TG+PWIDA+M QLR GWMHHL RH VA FLTRG ++ WE+G ++FD LID D
Sbjct: 415 GQTGFPWIDALMRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCS 474
Query: 281 NNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPL 340
N GNW+WLSCS+FF QY R+Y +F KYD G +R + P L P +YIYEP+ AP
Sbjct: 475 NPGNWMWLSCSAFFTQYFRLYGLATFPAKYDKTGALVRKYCPELAKFPDKYIYEPFNAPK 534
Query: 341 TIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKN--LRRKF 398
+Q +A CIIG+DYP P++ E +++ Y N + DG + LR+K
Sbjct: 535 DVQQKAGCIIGKDYPFPMLDEKETKGENMQRMKICYQANLHGTSKEVLDGKADDMLRKKH 594
Query: 399 EGEENQE 405
+E +E
Sbjct: 595 GFKEPKE 601
>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 655
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 169/474 (35%), Positives = 243/474 (51%), Gaps = 77/474 (16%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-S 60
KV + A +G+EV TL++P +++++N GKP ++ ++ AG+ + P P+ +
Sbjct: 116 KVLEIARKSGVEVVVKTGRTLYDPDELVKQNHGKPTMSITQ-VQAAGKKI-GRIPRPIPA 173
Query: 61 LSSLPPVGDV-------------------------GYFEIS------EVPTVEELGYKGY 89
S P GD Y ++ VPT+EELG K
Sbjct: 174 PKSFPNPGDTDLKFDQERPESQPDVNAIQRDGDEASYTALAGPNGDFAVPTMEELGLK-- 231
Query: 90 GQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
+ RGGE+EAL+ L E I+++E+ A FEKPK P+A+ +TT+LSP++ FG LS
Sbjct: 232 --PATTAHRGGETEALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLS 289
Query: 150 SRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFY--TVAFGTPNFDRMKGNRICKQI 206
R FY DV K K + PPVSL GQLL+RD ++ A G +F + N C+ I
Sbjct: 290 CRLFYWRAQDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAALGY-SFGQTYNNPNCRFI 348
Query: 207 PW---------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
PW + + W+ +TG+PWIDA+M QL + GW+HHL
Sbjct: 349 PWHLPSKIDTKSGLITGEYMVDNAEAEAHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLG 408
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
RH VACFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF Q+ R YSP++
Sbjct: 409 RHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQFYRCYSPIA 468
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD-----------Y 354
F +K+D G +R ++P L K+YIYEP AP+ Q + C+I D Y
Sbjct: 469 FPQKWDKEGKLVRKYVPELAKFDKKYIYEPHKAPIVDQKKWGCLIKGDGSAAAEGSMKTY 528
Query: 355 PAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFE-GEENQESG 407
P P+ C + AY +N N DG + R+ FE G E G
Sbjct: 529 PKPMFDFAERRDICLAGMKNAYHVNLYGNSPQVLDG--SWRKVFEDGAEGPTEG 580
>gi|429854958|gb|ELA29939.1| DNA photolyase [Colletotrichum gloeosporioides Nara gc5]
Length = 445
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 154/397 (38%), Positives = 214/397 (53%), Gaps = 56/397 (14%)
Query: 57 LPVSLSSLPPV------------GDVGYFEIS------EVPTVEELGYKGYGQEELSPFR 98
+PV PP GD Y +IS + T+EELG+ +P R
Sbjct: 1 MPVDFEPTPPKTKPDFNKEQRTEGDSAYKKISGPDGDFAIETMEELGFPS----ATTPHR 56
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GGE++AL L E + DK++ A FEKPK P+A+ +TT+LSP+L FG LS R FY
Sbjct: 57 GGETKALAMLEEILKDKKYTATFEKPKTSPAAFEPQSTTLLSPFLHFGALSVREFYWRAK 116
Query: 159 DVYQNVKKHTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPW-------- 208
+ K P +L+GQLL+RD ++ A G F + N C+ IPW
Sbjct: 117 EGIDKYKGAAKIPENLLGQLLFRDMYFAAHAALGY-KFTQTANNPYCRFIPWHLPSKVDS 175
Query: 209 -------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
DE W+ TG+PWIDA+M Q+R+ GW+HHL RH VACFLTR
Sbjct: 176 NTGLITGEYHVDSKQADEWFRRWKYGLTGFPWIDALMRQMREEGWIHHLGRHSVACFLTR 235
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGN 315
G ++ WE+G +VF+ LID + A N GNW WLSC++FF QY R YSPVSFG+K+D +G+
Sbjct: 236 GGCYIDWERGCEVFEEWLIDHEPAANAGNWQWLSCTAFFSQYFRCYSPVSFGQKWDKHGD 295
Query: 316 YIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC-IIGRD-------YPAPVVSHDSASKE 367
++R ++P LK + +YIYEPW APL Q +A + GR YP P+ +
Sbjct: 296 FVRRWVPELKKLDAKYIYEPWKAPLPDQKKAGVRVTGRGEKTEEGVYPKPMFDFNERRTI 355
Query: 368 CKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQ 404
C R + +AY + N + DG + R FEG++ +
Sbjct: 356 CLRAMKQAYQVGLHGNDKKVRDG--SWRELFEGDDTE 390
>gi|402076336|gb|EJT71759.1| cryptochrome-1 [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 661
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/416 (36%), Positives = 220/416 (52%), Gaps = 74/416 (17%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL- 61
V A AG+ V + TL++ ++ NGG+P ++ L++AG + PLP++
Sbjct: 117 VTQAARDAGVRVITRCGRTLWDSDRVVIANGGEPTMSITQ-LRVAGAKV-GPIPLPIAAP 174
Query: 62 SSLPPVGDVGY-FEIS--------------------------------------EVPTVE 82
++LP G++ FE+ V T+
Sbjct: 175 TTLPDPGEMPVDFEVHLPNAEASIDINSKWRSEGKDTTYGKGSVGEIAGPNGDFAVETLA 234
Query: 83 ELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPY 142
ELGY +P +GGE+ AL++L E ++D+E+ A F KP+ P+ + P+TT+LSP+
Sbjct: 235 ELGYP----PATTPHKGGETLALQRLDELMADQEYTATFRKPQSSPADFDPPSTTLLSPF 290
Query: 143 LKFGCLSSRYFYQCLTD-----VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN-FDR 196
L FG LS R FY + D V K + PP SL GQLL+RD ++ + F +
Sbjct: 291 LHFGALSVRLFYHRVQDAVDAYVKSRKKGASQPPESLTGQLLFRDMYFAAQAAIGDVFGQ 350
Query: 197 MKGNRICKQIPW----------------------SNDDELLAAWREARTGYPWIDAIMVQ 234
GN C+ IPW + ++ W RTG+PWIDA+M Q
Sbjct: 351 TAGNPRCRFIPWHLPSRLEGDAGPLRSFAYDVDSAQAEDWFRRWEAGRTGFPWIDALMRQ 410
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR GW+HHL RH VACFLTRG +V WE+G DVF+ LL+D + + N GNW WLSC++FF
Sbjct: 411 LRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPSCNAGNWQWLSCTAFF 470
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
QY R YSPVSFG+K+DP G ++R ++P L + K+YIYEPW AP RA ++
Sbjct: 471 SQYFRCYSPVSFGRKWDPEGTFVRRWVPELAALDKKYIYEPWKAPEAELRRAGVVL 526
>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 228/390 (58%), Gaps = 21/390 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP----- 56
KVK + I+ VSHTL+NP II+KNGG PP T++ F A Q SP
Sbjct: 111 KVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVD 170
Query: 57 -LPVSLSSLPPVGDVGYFEISEVPTVEELG-YKGYGQEELSPFR--GGESEALKKLRESI 112
L V LP F+ PT E G Y + S +R GGE+ AL++L+E +
Sbjct: 171 WLSVIFEELP-ASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERL 229
Query: 113 S-DKE-WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN-VKKHTS 169
+KE +V F P L P ++ LS L++GCLS R FY LT ++ N +
Sbjct: 230 EYEKEAFVNGFYLPNQVNPDLLSPPSS-LSAALRYGCLSIRKFYWELTKLFINKFEGDLL 288
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-----DDELLAAWREARTG 224
P S+ QL+WRD+FYT++ NF +++ N C IPW++ + ++L W+ +TG
Sbjct: 289 PMYSVTSQLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTGKTG 348
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
YP+IDA M QL + GW+HH+ R+ +A FLTRGD+++ W +G + F + L+D+D+++ +GN
Sbjct: 349 YPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGN 408
Query: 285 WLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTI 342
W+W+S S+F PVS+G + DP+G YI+ ++P LK+MP +++YEPW P ++
Sbjct: 409 WIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESV 468
Query: 343 QTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
Q + CIIG+DYP +V H ASK ++K+
Sbjct: 469 QKQVGCIIGKDYPNCIVDHTIASKGNRKKM 498
>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 228/390 (58%), Gaps = 21/390 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP----- 56
KVK + I+ VSHTL+NP II+KNGG PP T++ F A Q SP
Sbjct: 111 KVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVD 170
Query: 57 -LPVSLSSLPPVGDVGYFEISEVPTVEELG-YKGYGQEELSPFR--GGESEALKKLRESI 112
L V LP F+ PT E G Y + S +R GGE+ AL++L+E +
Sbjct: 171 WLSVIFEELP-ASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERL 229
Query: 113 S-DKE-WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN-VKKHTS 169
+KE +V F P L P ++ LS L++GCLS R FY LT ++ N +
Sbjct: 230 EYEKEAFVNGFYLPNQVNPDLLSPPSS-LSAALRYGCLSIRKFYWELTKLFINKFEGDLL 288
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-----DDELLAAWREARTG 224
P S+ QL+WRD+FYT++ NF +++ N C IPW++ + ++L W+ +TG
Sbjct: 289 PMYSVTSQLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTGKTG 348
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
YP+IDA M QL + GW+HH+ R+ +A FLTRGD+++ W +G + F + L+D+D+++ +GN
Sbjct: 349 YPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGN 408
Query: 285 WLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTI 342
W+W+S S+F PVS+G + DP+G YI+ ++P LK+MP +++YEPW P ++
Sbjct: 409 WIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESV 468
Query: 343 QTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
Q + CIIG+DYP +V H ASK ++K+
Sbjct: 469 QKQVGCIIGKDYPNCIVDHTIASKGNRKKM 498
>gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23]
gi|374257344|gb|AEZ01569.1| (6-4)PP photolyase [Metarhizium robertsii]
Length = 566
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 168/443 (37%), Positives = 234/443 (52%), Gaps = 68/443 (15%)
Query: 21 TLFNPADIIQKNGGKPPLTYQSFLKLA---GQ---PLWASSPLP----VSL-------SS 63
TL++ +I+ + GKP ++ L A GQ P+ A LP + L SS
Sbjct: 87 TLWDSDEIVAHHDGKPAMSMTQLLSAAKKVGQVPRPIAAPKSLPDPGDMPLDFGQHVPSS 146
Query: 64 LPPVG-------DVGYFEIS------EVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
+P V D Y I+ + T+EELG+ +P+RGGES ALK L +
Sbjct: 147 VPDVNAQTREKKDTAYKSIAGPKGDFAIETLEELGFPA----ATTPYRGGESIALKNLAD 202
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
+K++ A FEKPK P+ + +TT+LSP+L FG LS R FY + DV + K S
Sbjct: 203 IAKNKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSVREFYWRVQDVVEAYGKGAST 262
Query: 170 PPVSLVGQLLWRDFFYTV-AFGTPNFDRMKGNRICKQIPW-------------------- 208
PP SL GQL++RD ++ A F + GN C+ IPW
Sbjct: 263 PPASLTGQLIFRDMYFAAQAAVGAKFTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYTVD 322
Query: 209 SNDDEL-LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRD 267
S+D E W+ TG+PWIDA+M QL GW+HHL RH +ACFLTRG +V WE+G +
Sbjct: 323 SDDAEKWFQRWKRGVTGFPWIDALMRQLLHTGWIHHLGRHSLACFLTRGGCYVDWERGAE 382
Query: 268 VFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDM 327
VF+ L+D + A N GNW WLSC++FF QY R YSPVSFG+K+D NG+ IR ++P LK++
Sbjct: 383 VFEVHLLDHEPACNAGNWQWLSCTAFFSQYFRCYSPVSFGQKWDKNGDLIRKWVPELKNL 442
Query: 328 PKEYIYEPWTAPLTIQTRAKCIIGRD---------YPAPVVSHDSASKECKRKLGEAYAL 378
+YIYEPW AP+ Q +A + D YP P+ + C + AY +
Sbjct: 443 DSKYIYEPWKAPIQDQKKAGVRVVGDGLGDQEQGTYPKPMFDFGKRRETCINAMKIAYGV 502
Query: 379 NQKLNGQVSEDGLKNLRRKFEGE 401
+ + DG + R FEG+
Sbjct: 503 GLYGDDERVLDG--SWRELFEGK 523
>gi|343429136|emb|CBQ72710.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 684
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 159/468 (33%), Positives = 234/468 (50%), Gaps = 87/468 (18%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
+++ A + +EV + H L++P +++++N GKP + + K+ +P+ A +
Sbjct: 118 IREAAKKSNVEVVAVQGHHLYDPEEVVKRNKGKPTMALSTLQKIVANMGDVPKPIDAPTD 177
Query: 57 LPV--------------------SLSSLPPVGDVG------------------------- 71
LP+ SL LP G
Sbjct: 178 LPLPTLNDSKSKPLKDTLSELATSLDGLPHYTGKGREGPASVDLNSSELGGQRDEKVTCY 237
Query: 72 ------YFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPK 125
E+ VPT+ LG + +GGE AL+KL + D E+VA F KPK
Sbjct: 238 ETVSGDASELFGVPTLASLGMDASKVRDT--IKGGEPLALEKLAKICKDAEYVATFAKPK 295
Query: 126 GDPSAYLK-PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK--KHTSPPVSLVGQLLWRD 182
P + P+TT++SPYLKFGCLS R F+ + + + K T PP +L GQLL+RD
Sbjct: 296 TSPGDSAEDPSTTLMSPYLKFGCLSVRKFWWDVEEAKKKYKGGSKTGPPENLNGQLLFRD 355
Query: 183 FFYTV--AFGTPNFDRMKGNRICKQIPW--------------------SNDDELLAAWRE 220
+ A G +F R++GN +C+ + W + + L+A++
Sbjct: 356 MYACAEHAIGD-DFQRVRGNEVCRYMDWYLPTQYDKNGEVIVPRPAGDAVSEARLSAYKL 414
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
+TG+PWIDA+M QLR GWMHHL RH VA FLTRG ++ WE+G ++FD LID D
Sbjct: 415 GQTGFPWIDALMRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCS 474
Query: 281 NNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPL 340
N GNW+WLSCS+FF QY R+Y +F KYD G +R + P L P +YIYEP+ AP
Sbjct: 475 NPGNWMWLSCSAFFTQYFRLYGLATFPAKYDKTGALVRKYFPELAKFPDKYIYEPFNAPK 534
Query: 341 TIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSE 388
+Q +A CIIG+DYP P++ + +++ Y N L+G E
Sbjct: 535 DVQQQAGCIIGKDYPFPMLDEKETKGDNMQRMKICYQAN--LHGTSKE 580
>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
Length = 525
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/404 (36%), Positives = 222/404 (54%), Gaps = 30/404 (7%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA----------GQP 50
+ K+ S IEV+ V+HTL++P DII NGG PPLTY+ F+ +A P
Sbjct: 108 IAAKNLCSELDIEVYEHVAHTLWDPMDIIASNGGTPPLTYEMFVHVAMSVGDPPKPVADP 167
Query: 51 LWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGY--KGYGQEELSPFRGGESEALKK- 107
W V +L P + VPT+ ++G G F GGE+ ALK
Sbjct: 168 EWKG----VKFLTLEPFESNRFTLFGGVPTLSQIGVPENPVGCRGRRIF-GGETNALKHF 222
Query: 108 -LRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK 166
+R + + + F +P L P + LS + G +S R FY + +++ V +
Sbjct: 223 AIRLQAEETAFRSGFYQPNQARPDLLGPPLS-LSAAISVGAISVRLFYWRIHEIFDKVNR 281
Query: 167 HTSPP-VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGY 225
P + + GQ++WRD+FY ++ P FD+ N IC QIPW ++E W+ +TGY
Sbjct: 282 GNPPAWLGITGQIIWRDYFYAMSRMNPKFDKEVDNPICLQIPWVENEEFFEKWKNGQTGY 341
Query: 226 PWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNW 285
P+IDA M QL + GWMHH R+ VA FLTRGD++++W+ G + L+DSDW++N+GNW
Sbjct: 342 PFIDAGMRQLNQEGWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVNSGNW 401
Query: 286 LWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQ 343
+W+S S+F + + V +GK+ +P+G+YIR ++P L + EYI+EPW AP+ IQ
Sbjct: 402 MWVSSSAFERLLDCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEPWKAPIDIQ 461
Query: 344 TRAKCIIGRDYPAPVVSHDSA-------SKECKRKLGEAYALNQ 380
A CIIG+DYPA +V H+ KE ++K E A Q
Sbjct: 462 RTANCIIGQDYPAQMVVHEEVLPRNLEWMKEFRQKFKETPAHCQ 505
>gi|406867153|gb|EKD20192.1| cryptochrome-2 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 650
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 160/441 (36%), Positives = 234/441 (53%), Gaps = 79/441 (17%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV-SLSSLP 65
A AG+EV TL++ ++++KN GKP ++ S ++ AG P P P+ + S+P
Sbjct: 121 AKEAGVEVIVRSGRTLWDSDELVKKNRGKPTMSI-SQVQAAG-PKVGPIPRPIPAPESIP 178
Query: 66 PVG-------------------------DVGYFEIS------EVPTVEELGYKGYGQEEL 94
G D Y I+ PT+EELG+
Sbjct: 179 DPGETSLDFEQHHPERDPDFNRRTREKSDKSYESIAGPNGDFAPPTLEELGFPA----AT 234
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
+P RGGE+ ALK L + I+++++ A FEKP P+A+ +TT+LSP+L FG L R FY
Sbjct: 235 TPHRGGETVALKALDKLIANEKYTATFEKPNTAPTAFEPQSTTLLSPHLHFGSLGIREFY 294
Query: 155 QCLTDVYQNVK-KHTSPPVSLVGQLLWRDFFYTV------AFGTPNFDRMKGNRICKQIP 207
+ DV + K + PPVSL GQLL+RD ++ AFG + N C+ IP
Sbjct: 295 WRVQDVVDSFSGKASGPPVSLTGQLLFRDMYFGAQASLGYAFGQTMY-----NSHCRFIP 349
Query: 208 W------SNDDELLAA---------------WREARTGYPWIDAIMVQLRKWGWMHHLAR 246
W ++D +L+ W+ TG+PWIDA+M QL++ GW+HHL R
Sbjct: 350 WHLPSKVNHDTKLVMGEYHIDSPQAEEWFQRWKNGVTGFPWIDALMRQLKQEGWIHHLGR 409
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
H VACFLTRG ++ WE+G +VF+ LL+D + A N GNW WLSC++FF Q+ R YSPV+F
Sbjct: 410 HAVACFLTRGGCYISWERGAEVFEELLLDHETACNAGNWQWLSCTAFFAQFYRCYSPVAF 469
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD--------YPAPV 358
+K+D G ++R ++P L + K++IYEPW APL+ Q +A + D YP P+
Sbjct: 470 PQKWDKEGKFVRKYVPELAKLDKKFIYEPWRAPLSEQKKAGVSVKGDGQGKEKGVYPKPM 529
Query: 359 VSHDSASKECKRKLGEAYALN 379
C + EAY +
Sbjct: 530 FEFAERRTVCMEGMKEAYKVG 550
>gi|358368155|dbj|GAA84772.1| DNA photolyase [Aspergillus kawachii IFO 4308]
Length = 664
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 170/485 (35%), Positives = 240/485 (49%), Gaps = 104/485 (21%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ--------PLWA--SSP 56
A AG+EV TLF+ ++++ N G+P ++ K Q P+ A S P
Sbjct: 125 AKEAGVEVIVKSGRTLFDSDEVVKHNKGEPTMSIHQVEKAVEQINNGVPDRPVDAPKSVP 184
Query: 57 LPVSLSSLPPV----------------------GDVGYFEIS------EVPTVEELGYKG 88
P+ + + D Y I+ +P +EEL
Sbjct: 185 DPLGEEEMRAICGVEHEVPDQEDDLNAAHRTEHNDNQYKNIAGTNGDFSIPKLEELSIDP 244
Query: 89 YGQEELSPFRGGESEALKKLRESISDKE-WVANFEKPKGDPSAYLKPATTVLSPYLKFGC 147
+ +P GGES AL+ LR + E +VA FEKPK P+A+ ATT+LSP+L FG
Sbjct: 245 --SQATTPHHGGESIALEMLRTYLQQNEDFVATFEKPKTSPAAFHLQATTLLSPHLHFGS 302
Query: 148 LSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNR 201
LS R F+ + D + P P +L GQLL+R+ F+ A G P + + +GN+
Sbjct: 303 LSVRKFWHDVQDTLHERESAHKPTSNLPTNLPGQLLFREMFFAAQAALG-PVYAQARGNK 361
Query: 202 ICKQIPW---SNDDELLA------------------AWREARTGYPWIDAIMVQLRKWGW 240
I + IPW SN DE W+E RTG+PWIDA+M QL+ GW
Sbjct: 362 IARFIPWHLQSNYDEETGLVDRTYTIDDEQAEVWFRRWKEGRTGFPWIDALMRQLKYEGW 421
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID---------SDW------------- 278
+HHL RH VACFLTRG +VHWE+G +VF+ L+D SD+
Sbjct: 422 IHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLVDRISPILFSRSDFDSYDTNNRVIDET 481
Query: 279 AINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
A N GNW WLSC++FF Q+ R YSPV+FGKK+DP G ++RH++P L+ K+YIYEPW A
Sbjct: 482 ASNVGNWSWLSCTAFFTQFYRCYSPVAFGKKWDPEGLFVRHYVPELEHYDKKYIYEPWKA 541
Query: 339 PLTIQTRAKCII-------------GRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
P+ Q R +C + R YP P+ D + C ++ EAY ++ + +
Sbjct: 542 PVEDQKRWECRVTGDGMVEKDEETGSRTYPEPMFDFDERRQTCIAQMKEAYGVHLMGDDE 601
Query: 386 VSEDG 390
DG
Sbjct: 602 RVMDG 606
>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
morsitans]
Length = 536
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 223/390 (57%), Gaps = 33/390 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
VK + GI+ +SHTL+NP +IQ NGG PPLTYQ FL ++ G P P P
Sbjct: 115 VKVLCNELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQMFLHTVQVIGLP-----PRPA 169
Query: 60 SLSSLPPVGDVGYFE--------ISEVPTVEELGY--KGYGQEELSPFRGGESEALKKLR 109
++ V + E +E+P E+ + + L ++GGE+EAL L
Sbjct: 170 ENANWKGVDILNINETILEKLPGFTEIPQPEQFNVFAEDLNRLALVKWKGGETEALILLE 229
Query: 110 E--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK 166
E + + + + P + +P+ P + +SP+L+FGCLS R FY + D++++V++
Sbjct: 230 ERLKVEGEAFKRGYYLPNQANPNILETPKS--MSPHLRFGCLSVRKFYWAVHDLFEDVQQ 287
Query: 167 HTS-------PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWS-NDDELLAAW 218
H + GQL+WR++FYT++ P +DRM+ N IC IPW+ +DE L W
Sbjct: 288 HVKMFGFQIMSGAHITGQLIWREYFYTMSVNNPYYDRMEENEICLNIPWAPVNDEQLENW 347
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
+ +TG+P +DA M QL GW+HH R+ VA FLTRG ++ +WE G F + L+D+DW
Sbjct: 348 KLGKTGFPLVDAAMRQLLAEGWIHHTLRNTVATFLTRGGLWFNWEHGLQHFLKYLLDADW 407
Query: 279 AINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW 336
++ GNW+W+S S+F + + P++ K+ DP G YI+ ++P L +PKEYI+EPW
Sbjct: 408 SVCAGNWMWVSSSAFERLLDSSLVTCPLAMAKRLDPFGQYIKQYVPELAHVPKEYIHEPW 467
Query: 337 TAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
PL+ Q R+KCIIG YP ++ A++
Sbjct: 468 RMPLSEQKRSKCIIGEHYPKRIIDFVKAAE 497
>gi|358385715|gb|EHK23311.1| putative photolyase class 1 [Trichoderma virens Gv29-8]
Length = 627
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 232/445 (52%), Gaps = 72/445 (16%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW-ASSPLPVSLSSLPPVGD 69
G+EV TL++ DI++ +GGKP ++ L+ AG+ + + P+P SLP GD
Sbjct: 125 GVEVIIRPGRTLWDSDDIVKHHGGKPTMSITQ-LQAAGKKIGPVAKPIPAP-ESLPDPGD 182
Query: 70 V-------------------------GYFEIS------EVPTVEELGYKGYGQEELSPFR 98
+ Y I+ + T+EELG+ +P R
Sbjct: 183 MPVDFERHLPETKPDFNESYRSEEDTEYKHIAGPNGDFAIETLEELGFP----PATTPHR 238
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GGE+ ALK L E + DK++ A F+KPK P+ + +TT+LSP+ FG LS R FY +
Sbjct: 239 GGETRALKALDELLKDKKYTATFQKPKTSPAQFNPQSTTLLSPFFHFGALSVRLFYWRVH 298
Query: 159 DVYQNV-KKHTSPPVSLVGQLLWRDFFYT--VAFGTPNFDRMKGNRICKQIPWS-----N 210
+ ++ K +SPP SL+GQ+L+RD ++ A G +F + N C+ IPW +
Sbjct: 299 AIVESYGKAASSPPESLIGQVLFRDMYFAAQAALGA-SFAQTAMNPYCRFIPWHLPSKRD 357
Query: 211 DDELLAA----------------WREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
D LA W+ TG+PWIDA+M QLR GW+HHL RH VACFLT
Sbjct: 358 PDTGLATGDHHIDNQQAETWFQRWKAGVTGFPWIDALMRQLRHDGWIHHLGRHSVACFLT 417
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNG 314
RG +V WE+G +VF+ LID + A N GNW WLSC++FF QY R YSPVSFG+K+D +G
Sbjct: 418 RGGCYVDWERGAEVFEEWLIDHEPACNIGNWQWLSCTAFFTQYFRCYSPVSFGQKWDKDG 477
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD---------YPAPVVSHDSAS 365
IR ++P L + +YIYEPW PL Q A + D YP P+ +
Sbjct: 478 ALIRQWVPELSRVKAKYIYEPWKMPLFDQKEAGVRVTGDGLSGRQEATYPKPMFDFNERR 537
Query: 366 KECKRKLGEAYALNQKLNGQVSEDG 390
C + +AYA+ N DG
Sbjct: 538 DICMAAMKKAYAVGLYGNDDRVIDG 562
>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
Length = 377
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/271 (50%), Positives = 180/271 (66%), Gaps = 16/271 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K AS A +EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLASEAAVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ PV D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITAEVMGKCTTPVSD-DHDEKYGVPSLEELGFDTEGLPS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L +TT LSPYL+FGCLS FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-STTGLSPYLRFGCLSCCLFYFKLTDLYKMVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEK 264
QLR+ GW+HHLARH VACFLTRGD+++ K
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISGRK 376
>gi|210136298|gb|ACJ08741.1| cryptochrome [Neobellieria bullata]
Length = 542
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/412 (35%), Positives = 223/412 (54%), Gaps = 32/412 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
VK+ GI +SHTL++P +I NGG PPLTYQ FL P+P
Sbjct: 118 VKNLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQIIGLPPRPVPDPDW 177
Query: 59 -----VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR--GGESEALKKL--R 109
V LS + D+G F E PT E+ L+ + GGE++AL L R
Sbjct: 178 HNVKFVKLSE-KLIKDLGVF--LESPTPEDFSVYPDSLSYLAKVKWIGGETQALLHLDQR 234
Query: 110 ESISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+ + + + P + P+ P + +S +L+FGCLS R FY + D++++V++
Sbjct: 235 LKVEESAFKCGYYLPNQAKPNILESPKS--MSAHLRFGCLSVRKFYWDVHDLFKDVQQQA 292
Query: 169 -------SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDEL-LAAWRE 220
S + GQL+WR++FYT++ PN+DRM+GN IC IPW+ + + L W +
Sbjct: 293 ECLGMLMSGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLNIPWAETNHIQLQRWTQ 352
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
+TG+P IDA M QL GW+HH R+ VA FLTRG ++ +WE G F + L+D+DW++
Sbjct: 353 GKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHGLRYFLKYLLDADWSV 412
Query: 281 NNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
GNW+W+S S+F + + P++ K+ DP G YI+ ++P L ++PKEYI+EPW
Sbjct: 413 CAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRM 472
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
P+ IQ + C+IG YP ++ + A CKR L L + + D
Sbjct: 473 PMNIQEDSDCVIGIHYPERLIDLNVA---CKRNTIAMRTLRNALIAEGAPDN 521
>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
Length = 539
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/387 (37%), Positives = 214/387 (55%), Gaps = 27/387 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK------LAGQPLWASSP 56
VK GIE VSHTL++P +I NGG PLTYQ FL L +P+ +
Sbjct: 121 VKSLCRELGIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPVRDPNF 180
Query: 57 LPVSLSSLPPV--GDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
V L P D+G FE++ P + G + GGE++AL L E +
Sbjct: 181 EGVKFVQLSPELRHDIGCFEMTPTPEHFNVYSDNMGYLAKINWVGGETQALLLLGERLKV 240
Query: 115 KEWVANFEK-----PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK---- 165
++ FE+ + P+ P + +S +L+FGCLS R FY C+ D+++NV+
Sbjct: 241 EQHA--FERGYYLPNQAMPNILDTPKS--MSAHLRFGCLSVRRFYWCMHDLFKNVQLRAC 296
Query: 166 ---KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREA 221
S + GQL+WR++FYT++ P +DRM+GN IC IPW+ D E L WR
Sbjct: 297 VRGVQMSGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPWAKPDAEQLQRWRLG 356
Query: 222 RTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAIN 281
+TG+P ID+ M QL GW+HH R+ VA FLTRG ++ +WE G F + L+D+DW++
Sbjct: 357 QTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVC 416
Query: 282 NGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
GNW+W+S S+F + + PV+ K+ DPNG YI+ ++P L+ +PKEYI+EPW
Sbjct: 417 AGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPNGQYIKQYVPELQHVPKEYIHEPWLMS 476
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASK 366
Q R +C+IG YP ++ ASK
Sbjct: 477 AEEQKRYECLIGVHYPDRIIDLSLASK 503
>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
Length = 684
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 162/489 (33%), Positives = 236/489 (48%), Gaps = 94/489 (19%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
+ + A + ++V + H L++P ++ KN GKP ++ + K+ +P+ A
Sbjct: 118 ILEAAEKSNVKVVAVQGHHLYDPEQVVNKNKGKPTMSMSTLQKIVADMGDVPKPIDAPED 177
Query: 57 LPV--------------------SLSSLP----------------------------PVG 68
LP+ SL LP
Sbjct: 178 LPLPTLKDSKSKSLQDTLPELARSLEGLPYYTGKGREGPESIDLNSTELGGQRDKKVSCY 237
Query: 69 DVGYFEISEV---PTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPK 125
D E SE+ PT+ LG ++ +GGE AL+KL D ++VA F KPK
Sbjct: 238 DTVQGEASELFSAPTLASLGMDASKVKDT--IKGGEPIALEKLANICKDAKYVATFAKPK 295
Query: 126 GDPSAYLK-PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK--KHTSPPVSLVGQLLWRD 182
P + P+TT+LSPYLKFGCLS R + + K T PP +L GQLL+RD
Sbjct: 296 TSPGQSAEDPSTTLLSPYLKFGCLSVRKLWWDAEEAKNRYKGGSKTGPPENLNGQLLFRD 355
Query: 183 FFYTVAFGTPN-FDRMKGNRICKQIPW--------------------SNDDELLAAWREA 221
+ + + F R++GN +C+ + W + + L+A++
Sbjct: 356 MYACAEYAIGDAFGRVRGNEVCRYMDWYLPTHYDENGEVVLPRPAGDAVSEARLSAYKLG 415
Query: 222 RTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAIN 281
+TG+PWIDA+M QLR GWMHHL RH VA FLTRG ++ WE+G ++FD LID D N
Sbjct: 416 QTGFPWIDALMRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSN 475
Query: 282 NGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
GNW+WLSCS+FF QY R+Y +F KYD G +R + P L P +YIYEP+ AP
Sbjct: 476 PGNWMWLSCSAFFTQYFRLYGLATFPAKYDKTGALVRKYCPELAKFPDKYIYEPFNAPKE 535
Query: 342 IQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALN------QKLNGQVSE-----DG 390
+Q +A CIIG+DYP P++ A E ++ Y N + L G+ E G
Sbjct: 536 VQQKAGCIIGKDYPLPMLDEKEAKAENMARMKICYQANLYGTSKEVLEGKADEMLRKKHG 595
Query: 391 LKNLRRKFE 399
K+ ++F+
Sbjct: 596 FKDAPKEFD 604
>gi|340376095|ref|XP_003386569.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 550
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/379 (37%), Positives = 218/379 (57%), Gaps = 23/379 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ + AS IEV +HTL++P ++I+ N GKP LT++ F L + +P+S
Sbjct: 172 ISEMASMMNIEVEEFHNHTLYSPTELIKLNEGKPILTFKDFRTLLSK--LKPPAVPISSP 229
Query: 63 SLP--------PVGDVGYFEISEVPTVEELGYKGYGQE-ELSPFRGGESEALKKLRESIS 113
S P+ V F+I P++ LG Y E P+ GGE+EALK+L +
Sbjct: 230 STKQKYNEDNIPMFKVQTFQI---PSLASLG--CYDVELGTGPWVGGETEALKRLDNYCT 284
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
+ KP + L T+ LSPY++FGCLS R+F+ + + K +
Sbjct: 285 VRS------KPFDNFLDCLFDKTS-LSPYVRFGCLSVRHFWHYVRQLASTDKSKMTLVQE 337
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
+ +LL R+F++ V+ PNFD N IC Q+PW D + L WR TGYPWIDA +
Sbjct: 338 VSSKLLQREFYFLVSSQVPNFDTDTQNPICIQLPWEFDADGLRRWRSGMTGYPWIDAAIR 397
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
Q+ K GW+H+L R +A FLTRGD+++ W KG + F+ ++D + +++ G W+ S ++F
Sbjct: 398 QMLKEGWIHNLLRESIATFLTRGDLWISWLKGAESFEMYMLDYEPSVSCGCWMKSSSTAF 457
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y+P+S+G++ DPNG+YIRHF+P +K++PKEYI+ PW AP+ +Q A CI+G D
Sbjct: 458 ITGTIEHYNPISYGQQLDPNGDYIRHFVPEVKNLPKEYIFCPWMAPIEVQREAGCIVGTD 517
Query: 354 YPAPVVSHDSASKECKRKL 372
YP PVV H +A C +L
Sbjct: 518 YPHPVVDHMTAGVICMERL 536
>gi|389622363|ref|XP_003708835.1| cryptochrome-1, variant [Magnaporthe oryzae 70-15]
gi|351648364|gb|EHA56223.1| cryptochrome-1, variant [Magnaporthe oryzae 70-15]
Length = 528
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 184/310 (59%), Gaps = 37/310 (11%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
+ T+EELGY +P++GGES AL++L I ++ + A F KP+ P+A+ +TT
Sbjct: 72 IETLEELGYP----PATTPYKGGESLALRELDAIIENQVYTATFRKPQTSPAAFEPQSTT 127
Query: 138 VLSPYLKFGCLSSRYFY---QCLTDVYQNVKKHTS--PPVSLVGQLLWRDFFYTV-AFGT 191
+LSP + FG LS R FY Q D Y KK + PP SL GQLL+RD ++ A
Sbjct: 128 LLSPAMHFGSLSVRLFYHRVQDTVDAYNQAKKKGASLPPESLTGQLLFRDMYFAAQAAIG 187
Query: 192 PNFDRMKGNRICKQIPWS----NDDELLAA---------------------WREARTGYP 226
P F + GN C+ IPW +D ++ W +TG+P
Sbjct: 188 PCFSQTAGNAHCRFIPWHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEAGQTGFP 247
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
WIDA+M QLR GW+HHL RH VACFLTRG +V WE+G DVF+ LL+D + A N GNW
Sbjct: 248 WIDALMRQLRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPACNAGNWQ 307
Query: 287 WLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
WLSC++FF QY R YSP+SFGKK+DP+G +IR ++P L + K+YIYEPW AP RA
Sbjct: 308 WLSCTAFFSQYFRCYSPISFGKKWDPDGTFIRKWVPELASLDKKYIYEPWKAPEAELRRA 367
Query: 347 KCII--GRDY 354
++ G D+
Sbjct: 368 GVVMVSGHDF 377
>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
gi|205696352|sp|Q293P8.2|CRY1_DROPS RecName: Full=Cryptochrome-1
gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 215/405 (53%), Gaps = 50/405 (12%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP---- 66
GIE VSHTL++P +I+ NGG PPLTYQ FL V + +PP
Sbjct: 129 GIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLH------------TVQIIGVPPRPAI 176
Query: 67 ---VGDVGYFEIS-----------EVPTVEELGYKGYGQEELSPF--RGGESEALKKLRE 110
+ D + +++ +VP E L+ RGGE++AL L E
Sbjct: 177 DAHINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEE 236
Query: 111 SISDKEWVANFEKPKGDPSAY---LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-- 165
+ + FE+ P+ ++ A +S +L+FGCLS R FY + D+++NV+
Sbjct: 237 RLKVER--NAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLA 294
Query: 166 -----KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDE-LLAAWR 219
+ GQL+WR++FYT++ PN+DRM+GN IC IPW+ DE LL WR
Sbjct: 295 ACVRGVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLTIPWAKPDENLLQRWR 354
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
+TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D+DW+
Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWS 414
Query: 280 INNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
+ GNW+W+S S+F + + PV+ K+ DP G YIR ++P LK++PKEYI+EPW
Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIHEPWR 474
Query: 338 APLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
Q + +C+IG YP ++ SK KR + AL L
Sbjct: 475 LSAEQQVKFECLIGVHYPERII---DLSKAVKRNMMAMTALRNSL 516
>gi|444511893|gb|ELV09967.1| Cryptochrome-1 [Tupaia chinensis]
Length = 463
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 142/190 (74%)
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HHLAR
Sbjct: 199 AATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLAR 258
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
H VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+ Y PV F
Sbjct: 259 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGF 318
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
G++ DPNG+YIR +LPVL+ P +YIY+PW AP +Q AKC+IG +YP P+V+H AS+
Sbjct: 319 GRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGVNYPKPMVNHAEASR 378
Query: 367 ECKRKLGEAY 376
++ + Y
Sbjct: 379 LNIERMKQIY 388
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 14/92 (15%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SL---------PPVGDVGYFEISEVPTVEELG 85
++ P+ D + E VP++EEL
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKFGVPSLEELA 199
>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
Length = 539
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 214/388 (55%), Gaps = 29/388 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLP- 58
K IE VSHTL++P +I NGG PLTYQ FL ++ G P P+P
Sbjct: 121 TKSLCRELNIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLP---PRPIPD 177
Query: 59 -----VSLSSLPPV--GDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
VS++ LP D+G E + P + G + GGE++AL L E
Sbjct: 178 PNFEGVSIAQLPQELRKDIGCLEKTPTPEDFNIYSDNMGYLAKMNWIGGETQALSLLGER 237
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTV---LSPYLKFGCLSSRYFYQCLTDVYQNVKK-- 166
+ ++ FE+ P+ L +S +L+FGCLS R FY + D+++NV+
Sbjct: 238 LKVEQHA--FERGYYLPNQALPNILETPKSMSAHLRFGCLSVRRFYWSMHDLFKNVQMRA 295
Query: 167 -----HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWRE 220
+ + GQL+WR++FYT++ P +DRM+GN IC IPWS D + L WR
Sbjct: 296 CVRGVQMTGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPWSKPDADQLQRWRL 355
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
+TG+P ID+ M QL GW+HH R+ VA FLTRG ++ +WE G + F + L+D+DW++
Sbjct: 356 GQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELGLEHFLKYLLDADWSV 415
Query: 281 NNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
GNW+W+S S+F + + PV+ K+ DPNG YI+ ++P LK++PKE+I+EPW
Sbjct: 416 CAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPNGAYIKQYVPELKNVPKEFIHEPWRM 475
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASK 366
Q R +C++G YP ++ ASK
Sbjct: 476 SSEQQERYECLLGFHYPQRIIDLSLASK 503
>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
Length = 543
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 212/390 (54%), Gaps = 33/390 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
VK GIE VSHTL++P +I+ NGG PPLTYQ FL LP +
Sbjct: 123 VKSLCQELGIEWVEMVSHTLWDPHTVIETNGGIPPLTYQMFLHTV-----EIIGLPPRPT 177
Query: 63 SLPPVGDVGYFEISE-----------VPTVEELGY--KGYGQEELSPFRGGESEALKKLR 109
+ P +VG+ EIS+ PT E G +RGGE+EAL L+
Sbjct: 178 NDPNWNNVGFVEISQELQRELKYLQHFPTPEYFNIYCDNMGYLAKINWRGGETEALLLLQ 237
Query: 110 ESISDKEWVANFEKPKGDPSAYLKPATTV---LSPYLKFGCLSSRYFYQCLTDVYQNVKK 166
E + ++ + FE+ P+ L +SP+L+FGCLS R FY + D+++NV+
Sbjct: 238 ERLKVEQ--SAFERGYYLPNQALPNILDTPKSMSPHLRFGCLSVRRFYWNVHDLFKNVQL 295
Query: 167 HT-------SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAW 218
+ + GQL+WR++FYT++ N+DRM GN IC IPWS +E L W
Sbjct: 296 QACVRGVQMTGGSHITGQLIWREYFYTMSVNNSNYDRMDGNEICLNIPWSKPHEEKLERW 355
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
R +TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D+DW
Sbjct: 356 RLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGVQHFLKYLLDADW 415
Query: 279 AINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW 336
++ GNW+W+S S+F + + + K+ DP+G YI+ ++P L+++PKEYI+EPW
Sbjct: 416 SVCAGNWMWVSSSAFERLLDSSLVTCSQAMAKRLDPDGLYIKQYVPELRNVPKEYIHEPW 475
Query: 337 TAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
Q R +C+IG YP P++ A K
Sbjct: 476 RMSAEDQERYECLIGVHYPEPIIDLSLALK 505
>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
Length = 463
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 143/325 (44%), Positives = 195/325 (60%), Gaps = 11/325 (3%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV S SHTL++ II +NGG PPLTY+ FL + P+P S
Sbjct: 135 AREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQK 194
Query: 67 VGDV----GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+G + E+ VPT+EELG + + + + GGE+EALK+L + K W+A+F
Sbjct: 195 LGHTPLSDNHDELYGVPTMEELGLET-SKLFVEVWHGGETEALKRLDRHLERKAWIASFG 253
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
KPK + + + V SPYL+FGCLS R FY L D+Y+ VK PP SL GQLLWR+
Sbjct: 254 KPKVTSDSLMASPSGV-SPYLRFGCLSPRLFYYRLMDLYRKVKG-GPPPTSLYGQLLWRE 311
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDEL---LAAWREARTGYPWIDAIMVQLRKWG 239
FF+ V+ PNFD+M+ N IC I W D ++ L W +A+TG+PWIDAIM QL++ G
Sbjct: 312 FFFVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEG 371
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
W+H+LAR VA FLTRG +++ WE G VF L+D+DW+ N GNW+W S S+F Q+
Sbjct: 372 WIHYLARVAVASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWWSYSAFSQQFFN 431
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVL 324
PV F Y + + F PV+
Sbjct: 432 PPCPVEFS-NYSGDSLFFILFPPVI 455
>gi|390351006|ref|XP_786331.2| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 439
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 193/328 (58%), Gaps = 11/328 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS- 60
+VK +E VSHTL+NP II+KNGG PP+TY F++ + P+P
Sbjct: 113 RVKALCKEMKVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTEIGHPPRPMPDPI 172
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYK-GYGQEELSPFRGGESEALKKLRESISDKEWVA 119
L+ + + E +P++E +G ++E ++GGE+ AL+ R I +E
Sbjct: 173 LTKVNMKIPSDFEERCALPSLEVMGVNMECTEQEKKVWKGGETRALELFRVRILHEE--E 230
Query: 120 NFEKPKGDPSAYLKPATTV---LSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
F+ P+ Y+ LS YL+FGCLS R FY + D Y +KK SP L
Sbjct: 231 AFKGGYCLPNQYMPDLLGTPKSLSAYLRFGCLSVRRFYWKIHDTYSELKKEVSPS-HLTA 289
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
Q++WR++FYT++ G +F++MK N IC I W DDE L AW + RTGYPWIDA M QL+
Sbjct: 290 QVIWREYFYTMSVGNIHFNKMKENPICLNIEWKEDDEKLKAWTDGRTGYPWIDACMKQLK 349
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF--F 294
GW+H + RH ACFLTRGD+++ WE G VFD+ L+D+DW+I GNW+W+S S+F F
Sbjct: 350 YEGWIHQVGRHATACFLTRGDLWISWEDGLQVFDKYLLDADWSICAGNWMWISSSAFEKF 409
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLP 322
Q + PV +G++ DP G Y+R F+P
Sbjct: 410 LQCPNCFCPVRYGRRMDPTGEYVR-FVP 436
>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 233/432 (53%), Gaps = 43/432 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
V+ + IE VSHTL++P +I NGG PPLTYQ FL ++ G P P PV
Sbjct: 123 VRSLCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVP-----PRPV 177
Query: 60 SLSSLPPVGDVGYFEISE-----------VPTVEELGYKGYGQEELSPFR--GGESEALK 106
P V + ++++ PT E+ ++ + GGE +AL
Sbjct: 178 ED---PDWDGVEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALL 234
Query: 107 KLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L E + ++ + + P + +P+ P + +S +L+FGCLS R FY + D++++
Sbjct: 235 HLDERLKVEERAFKNGYYLPNQANPNILESPKS--MSAHLRFGCLSVRRFYWSVHDLFKH 292
Query: 164 V-------KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELL 215
V + H + + GQL+WR++FYT++ P +DRM+GN IC IPW+ + E L
Sbjct: 293 VQIEALRQRVHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLNIPWAAPNKEQL 352
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
+WR +TG+P IDA M QL GW+HH R+ VA FLTRG ++ WE G F + L+D
Sbjct: 353 QSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLD 412
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + + P++F K+ DP G YIR ++P L ++P+EYI+
Sbjct: 413 ADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELANVPQEYIH 472
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL-NGQVSEDGLK 392
EPW P +Q +C+IG YP +V + S KR + L Q L G ++G
Sbjct: 473 EPWRMPQELQENCECVIGVQYPERIVDLANVS---KRNVXAMQTLRQSLIAGGAPDEGPP 529
Query: 393 NLRRKFEGEENQ 404
+ R E E +Q
Sbjct: 530 HCRPSNEEEVHQ 541
>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
gi|205696380|sp|Q7PYI7.4|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
Length = 545
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 215/397 (54%), Gaps = 21/397 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
V T + VSHTL+NP ++IQ NG PPLTYQ FL +P+ A +
Sbjct: 121 VAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDPPRPVGAPNF 180
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELG--YKGYGQEELSPFRGGESEALKKLRESISD 114
V +P + ++P ++ G Y G + + GGE+ AL+ L +
Sbjct: 181 EYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEALGARLKQ 240
Query: 115 KE--WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
+E + + P L PAT+ +S L+FGCLS R FY C+ D++ V+ ++
Sbjct: 241 EEEAFREGYYLPTQAKPEILGPATS-MSAALRFGCLSVRMFYWCVHDLFAKVQSNSQFKY 299
Query: 173 ----SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYPW 227
+ GQL+WR++FYT++ P++ M+ N IC IPW +D+ L W+E RTG+P
Sbjct: 300 PGGHHITGQLIWREYFYTMSVQNPHYGEMERNPICLNIPWYKPEDDSLTRWKEGRTGFPM 359
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDA M QL GW+HH+ R+ A FLTRG +++ WE+G F + L+D+DW++ GNW+W
Sbjct: 360 IDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAGNWMW 419
Query: 288 LSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
+S S+F ++ P++ ++ DP G+Y++ +LP L + P ++++EPW A Q
Sbjct: 420 VSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFVHEPWKASREQQIE 479
Query: 346 AKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
C+IG YPAP+V S KR +L +KL
Sbjct: 480 YGCVIGEKYPAPMVDLAIVS---KRNAHTMASLREKL 513
>gi|380479795|emb|CCF42805.1| DNA photolyase [Colletotrichum higginsianum]
Length = 461
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 201/375 (53%), Gaps = 45/375 (12%)
Query: 68 GDVGYFEIS------EVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
GD Y I+ + T+EELG+ +P RGGE+ AL L +D+++ A F
Sbjct: 55 GDAAYQRIAGPEGDFAIETMEELGFP----PASTPHRGGETRALAMLEAMAADEKYTATF 110
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP-PVSLVGQLLW 180
EKPK P+A+ +TT LSP+L FG LS R FY + V K S P SL GQLL+
Sbjct: 111 EKPKTSPAAFEPQSTTFLSPFLHFGALSVREFYWRVQGVVARYGKGASKVPESLTGQLLF 170
Query: 181 RDFFYTV--AFGTPNFDRMKGNRICKQIPW---------------------SNDDELLAA 217
RD ++ A G F + N C+ IPW DE
Sbjct: 171 RDMYFAAHAALGH-RFTQTANNPYCRFIPWHLPSKVDAETGLVTGEYHVDSEQADEWFRR 229
Query: 218 WREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSD 277
W+ TG+PWIDA+M QLR+ GW+HHL RH VACFLTRG +V WE+G +VF+ L+D +
Sbjct: 230 WKYGMTGFPWIDALMRQLREEGWIHHLGRHAVACFLTRGGCYVDWERGCEVFEEWLLDHE 289
Query: 278 WAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
A N GNW WLSC++FF QY R YSPV+FG+K+D G ++R ++P L ++ +YIYEPW
Sbjct: 290 PACNAGNWQWLSCTAFFSQYFRCYSPVAFGQKWDRQGAFVRRWVPELANLDAKYIYEPWK 349
Query: 338 APLTIQTRAKC-IIGRD-------YPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSED 389
APL Q +A + GR YP P+ D C + +AY + + N D
Sbjct: 350 APLPDQKKAGVRVTGRGGEREAGVYPKPMFDFDERRTACLAAMKKAYGVGLQGNDDKVRD 409
Query: 390 GLKNLRRKFEGEENQ 404
G + R F GE +
Sbjct: 410 G--SWRELFAGEGTE 422
>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
Length = 542
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 217/393 (55%), Gaps = 39/393 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ I+ VSHTL++P +I+ NGG PPLTYQ FL ++ G P P P
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP-----PRPT 175
Query: 60 SLSSLPPVGDVGYFEIS-----------EVPTVEELGYKGYGQEELSPF--RGGESEALK 106
+ + L D + E+ ++PT E G L+ RGGE++AL
Sbjct: 176 ADARLE---DATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALH 232
Query: 107 KLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L E + + F P + P+ + P + +S +L+FGCLS R FY + D+++N
Sbjct: 233 LLDERLKVEQHAFERGFYLPNQALPNIHDSPKS--MSAHLRFGCLSVRRFYWSVHDLFKN 290
Query: 164 VK-------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELL 215
V+ + + GQL+WR++FYT++ PN+DRM+GN IC IPW+ +++LL
Sbjct: 291 VQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDLL 350
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
+WR +TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D
Sbjct: 351 QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLD 410
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + + PV+ K+ DP+G YI+ ++P L ++PKE+++
Sbjct: 411 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVH 470
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
EPW Q + +C+IG YP ++ A K
Sbjct: 471 EPWRMSAEQQEQYECLIGVHYPERIIDLSMAVK 503
>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
Length = 539
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/408 (35%), Positives = 220/408 (53%), Gaps = 40/408 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK---LAGQPLWASSPLPV 59
+ + GIE VSHTL++P +I NGG PLTYQ FL + G P P PV
Sbjct: 121 INNLCRELGIEYVEMVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVHIIGLP-----PRPV 175
Query: 60 SLSSLPPVG----------DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLR 109
VG ++G E + P + G + GGES+AL L
Sbjct: 176 HDPQFDGVGFVQLSAEMRREIGCLEKTPSPEHFNVYSDNMGTLAKINWVGGESQALLLLG 235
Query: 110 ESISDKEWVANFEK-----PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
E + ++ FE+ + P+ KP + +S +L+FGCLS R FY + D+++NV
Sbjct: 236 ERLKVEQHA--FERGYYLPNQALPNIVDKPKS--MSAHLRFGCLSVRRFYWNVHDLFKNV 291
Query: 165 K-------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLA 216
+ + + GQL+WR++FYT++ P +DRM+GN IC IPW+ +++ L
Sbjct: 292 QLRACIRGVQMTSGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLNIPWAKPNEDHLQ 351
Query: 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS 276
WR +TG+P IDA M QL GW+HH R+ VA FLTRG ++ +WE G F + L+D+
Sbjct: 352 RWRLGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDA 411
Query: 277 DWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYE 334
DW++ GNW+W+S S+F +++ PV+ K++DPNG YI+ ++P L+++ KE+I+E
Sbjct: 412 DWSVCAGNWMWVSSSAFERLLDTSQVSCPVALAKRFDPNGVYIKQYVPELRNVTKEFIHE 471
Query: 335 PWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
PW Q A+C+IG YP ++ AS KR + AL L
Sbjct: 472 PWRMTAEQQEIAECLIGVHYPERIIDLSLAS---KRNMAAMKALRNSL 516
>gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides]
Length = 247
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/212 (52%), Positives = 157/212 (74%), Gaps = 3/212 (1%)
Query: 77 EVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPAT 136
++P+++EL + G L + GGE+E L++L ++ +EWV FEKP P++ L+P+T
Sbjct: 39 DIPSLDELEFDESGLNPLK-YPGGETEGLRRLNMYMARREWVCKFEKPNSSPNS-LEPST 96
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDR 196
TVLSPY+ GCLS++ FY L +V N +HT PPVSL+GQL+WR+F+YT GT NFD+
Sbjct: 97 TVLSPYISHGCLSAKLFYHKLKEVL-NSMRHTEPPVSLLGQLMWREFYYTAGAGTENFDK 155
Query: 197 MKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRG 256
M GN +C QIPW ++E L AW E RTGYP++DAIM QL++ GW+HHLARH VACFLTRG
Sbjct: 156 MVGNSVCTQIPWGKNEEHLIAWAEGRTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRG 215
Query: 257 DMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
D+++ WE+G VF+ L+D DW++N GNW+W+
Sbjct: 216 DLWISWEQGAKVFEDYLLDYDWSLNAGNWMWV 247
>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
gi|74960862|sp|O77059.1|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
Full=Blue light photoreceptor
gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
Length = 542
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 216/393 (54%), Gaps = 39/393 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ I+ VSHTL++P +I+ NGG PPLTYQ FL ++ G P P P
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP-----PRPT 175
Query: 60 SLSSLPPVGDVGYFEIS-----------EVPTVEELGYKGYGQEELSPF--RGGESEALK 106
+ + L D + E+ ++PT E G L+ RGGE++AL
Sbjct: 176 ADARLE---DATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALL 232
Query: 107 KLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L E + + F P + P+ + P + +S +L+FGCLS R FY + D+++N
Sbjct: 233 LLDERLKVEQHAFERGFYLPNQALPNIHDSPKS--MSAHLRFGCLSVRRFYWSVHDLFKN 290
Query: 164 VK-------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDE-LL 215
V+ + + GQL+WR++FYT++ PN+DRM+GN IC IPW+ +E LL
Sbjct: 291 VQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL 350
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
+WR +TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D
Sbjct: 351 QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLD 410
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + + PV+ K+ DP+G YI+ ++P L ++PKE+++
Sbjct: 411 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVH 470
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
EPW Q + +C+IG YP ++ A K
Sbjct: 471 EPWRMSAEQQEQYECLIGVHYPERIIDLSMAVK 503
>gi|406855882|pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
gi|406855883|pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 216/393 (54%), Gaps = 39/393 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ I+ VSHTL++P +I+ NGG PPLTYQ FL ++ G P P P
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP-----PRPT 175
Query: 60 SLSSLPPVGDVGYFEIS-----------EVPTVEELGYKGYGQEELSPF--RGGESEALK 106
+ + L D + E+ ++PT E G L+ RGGE++AL
Sbjct: 176 ADARLE---DATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALL 232
Query: 107 KLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L E + + F P + P+ + P + +S +L+FGCLS R FY + D+++N
Sbjct: 233 LLDERLKVEQHAFERGFYLPNQALPNIHDSPKS--MSAHLRFGCLSVRRFYWSVHDLFKN 290
Query: 164 VK-------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDE-LL 215
V+ + + GQL+WR++FYT++ PN+DRM+GN IC IPW+ +E LL
Sbjct: 291 VQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL 350
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
+WR +TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D
Sbjct: 351 QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLD 410
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + + PV+ K+ DP+G YI+ ++P L ++PKE+++
Sbjct: 411 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVH 470
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
EPW Q + +C+IG YP ++ A K
Sbjct: 471 EPWRMSAEQQEQYECLIGVHYPERIIDLSMAVK 503
>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
Length = 542
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 216/393 (54%), Gaps = 39/393 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ I+ VSHTL++P +I+ NGG PPLTYQ FL ++ G P P P
Sbjct: 121 IRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP-----PRPT 175
Query: 60 SLSSLPPVGDVGYFEIS-----------EVPTVEELGYKGYGQEELSPF--RGGESEALK 106
+ + L D + E+ ++PT E G L+ RGGE++AL
Sbjct: 176 ADARL---DDATFVELDPEFCRSLKLFDQLPTPEHFNVYGDNMGFLAKINWRGGETQALL 232
Query: 107 KLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L E + + F P + P+ + P + +S +L+FGCLS R FY + D+++N
Sbjct: 233 LLDERLKVEQHAFERGFYLPNQALPNIHDSPKS--MSAHLRFGCLSVRRFYWSVHDLFKN 290
Query: 164 VK-------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELL 215
V+ + + GQL+WR++FYT++ PN+DRM+GN IC IPW+ +++LL
Sbjct: 291 VQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDLL 350
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
WR +TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D
Sbjct: 351 QRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLD 410
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + + PV+ K+ DP+G YI+ ++P L ++PKE+++
Sbjct: 411 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVH 470
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
EPW Q + +C+IG YP ++ A K
Sbjct: 471 EPWRMSAEQQEQYECLIGVHYPERIIDLSMAVK 503
>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
Length = 547
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 232/432 (53%), Gaps = 43/432 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
V+ + IE VSHTL++P +I NG PPLTYQ FL ++ G P P PV
Sbjct: 123 VRALCNDLDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQMFLHTVEIIGAP-----PRPV 177
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQ-EELSPF------------RGGESEALK 106
P V + ++++ +E + + E+ + F RGGE +AL
Sbjct: 178 ED---PEWDGVEFLKLTDNMLMELNAFWQFPTPEDFNIFPDNISYVAKVKWRGGEQQALL 234
Query: 107 KLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L E + ++ + + P + +P+ P + +S +L+FGCLS R FY + D++++
Sbjct: 235 HLAERLKVEERAFKNGYYLPNQANPNILESPKS--MSAHLRFGCLSVRRFYWSVHDLFKH 292
Query: 164 V-------KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELL 215
V + H + + GQL+WR++FYT++ P +DRM+GN IC IPW+ + E L
Sbjct: 293 VQIEAFYHRIHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNEICLNIPWAPPNQEQL 352
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
+WR +TG+P IDA M QL GW+HH R+ VA FLTRG ++ WE G F + L+D
Sbjct: 353 QSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLD 412
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + + P++F K+ DP G YIR ++P L +P+EYI+
Sbjct: 413 ADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELAKIPQEYIH 472
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL-NGQVSEDGLK 392
EPW P +Q +C+IG YP +V +K KR L Q L G ++G
Sbjct: 473 EPWRMPQEMQENYECVIGVQYPERIV---DLAKVSKRNTLAXQTLRQSLIAGGAPDEGPP 529
Query: 393 NLRRKFEGEENQ 404
+ R E E +Q
Sbjct: 530 HCRPSNEEEVHQ 541
>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
Length = 361
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 174/259 (67%), Gaps = 10/259 (3%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV SHTL++ II+ NG KPPLTY+ F + + P+ +S
Sbjct: 107 AKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQME 166
Query: 67 VGDV----GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
V + ++ VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN
Sbjct: 167 TCKVDIQENHDDVYGVPSLEELGFPTDG---LAPAVWQGGETEALARLDKHLERKAWVAN 223
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQLLW
Sbjct: 224 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLW 282
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 283 REFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 342
Query: 241 MHHLARHCVACFLTRGDMF 259
+HHLARH VACFLTRGD++
Sbjct: 343 IHHLARHAVACFLTRGDLW 361
>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1, partial [Passer domesticus]
Length = 361
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 174/259 (67%), Gaps = 10/259 (3%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV SHTL++ II+ NG KPPLTY+ F + + P+ +S
Sbjct: 107 AKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQME 166
Query: 67 VGDV----GYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
V + ++ VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN
Sbjct: 167 TCKVDIQENHDDVYGVPSLEELGFPTDG---LAPAVWQGGETEALARLDKHLERKAWVAN 223
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQLLW
Sbjct: 224 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLW 282
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 283 REFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 342
Query: 241 MHHLARHCVACFLTRGDMF 259
+HHLARH VACFLTRGD++
Sbjct: 343 IHHLARHAVACFLTRGDLW 361
>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
Length = 608
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 208/384 (54%), Gaps = 20/384 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASS 55
+V T ++ VSHTL+NP ++IQ NG PPLTYQ FL +P+ A
Sbjct: 180 RVTKLCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQMFLHTVDIIGEPPRPVGAPD 239
Query: 56 PLPVSLSSLPPV--GDVGYFEISEVPTVEELG--YKGYGQEELSPFRGGESEALKKLRES 111
+ +P + ++ ++ +P EE G Y G + GGE+ AL+ L
Sbjct: 240 FEFIEFGRIPAILASELKLYQQQHMPGPEEFGLTYDGNADIAFQKWIGGETRALESLGAR 299
Query: 112 ISDKE--WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS 169
+ +E + + P L PAT+ +S L+FGCLS R FY C+ D++ V+ +
Sbjct: 300 LKQEEEAFREGYYLPTQAKPEILGPATS-MSAALRFGCLSVRMFYWCVHDLFAKVQASSQ 358
Query: 170 --PPVS--LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND-DELLAAWREARTG 224
P+ + GQL+WR++FYT++ P++ M N IC IPW D+ L W+E RTG
Sbjct: 359 FKCPIGQHITGQLIWREYFYTMSVRNPHYGEMDRNPICLNIPWYEPVDDSLVRWKEGRTG 418
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+P IDA M QL GW+HH+ R+ A FLTRG +++ WE G F + L+D+DW++ GN
Sbjct: 419 FPLIDAAMRQLLAEGWLHHILRNITATFLTRGGLWISWEAGLQHFLKYLLDADWSVCAGN 478
Query: 285 WLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTI 342
W+W+S S+F ++ PV+ + DP G+Y++ ++P L + P ++EPW A
Sbjct: 479 WMWVSSSAFERLLDSSKCTCPVALAYRLDPTGDYVKRYVPELVNYPAHLVHEPWKATKEE 538
Query: 343 QTRAKCIIGRDYPAPVVSHDSASK 366
Q C IG+ YPAP+V + +K
Sbjct: 539 QLEYGCTIGQQYPAPMVDLNVVAK 562
>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
Length = 542
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 215/394 (54%), Gaps = 39/394 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLP 58
++ I+ VSHTL++P +I+ NGG PPLTYQ FL ++ G P P P
Sbjct: 120 NIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP-----PRP 174
Query: 59 VSLSSLPPVGDVGYFEIS-----------EVPTVEELGYKGYGQEELSPF--RGGESEAL 105
+ + L D + E+ ++P E G L+ RGGE++AL
Sbjct: 175 TADARL---DDATFVELEPEFCRSLKLFEQLPMPEHFNVYGDNMGFLAKINWRGGETQAL 231
Query: 106 KKLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
L E + + F P + P+ + P + +S +L+FGCLS R FY + D+++
Sbjct: 232 LLLDERLKVEQHAFERGFYLPNQALPNIHDSPKS--MSAHLRFGCLSVRRFYWSVHDLFK 289
Query: 163 NVK-------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDEL 214
NV+ + + GQL+WR++FYT++ PN+DRM+GN IC IPW+ +++L
Sbjct: 290 NVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPNEDL 349
Query: 215 LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLI 274
L WR +TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+
Sbjct: 350 LQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLL 409
Query: 275 DSDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
D+DW++ GNW+W+S S+F + + PV+ K+ DP+G YI+ ++P L ++PKEY+
Sbjct: 410 DADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEYV 469
Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+EPW Q + +C+IG YP ++ A K
Sbjct: 470 HEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVK 503
>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 231/432 (53%), Gaps = 43/432 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
V+ + IE VSHTL++P +I NGG PPLTYQ FL ++ G P P PV
Sbjct: 123 VRSLCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVP-----PRPV 177
Query: 60 SLSSLPPVGDVGYFEISE-----------VPTVEELGYKGYGQEELSPFR--GGESEALK 106
P V + ++++ PT E+ ++ + GGE +AL
Sbjct: 178 ED---PDWDGVEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALL 234
Query: 107 KLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L E + ++ + + P + +P+ P + +S +L+FGCLS R FY + D++++
Sbjct: 235 HLDERLKVEERAFKNGYYLPNQANPNILESPKS--MSAHLRFGCLSVRRFYWRVHDLFKH 292
Query: 164 V-------KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELL 215
V + H + + GQL+WR++FYT++ P +DRM+GN IC IPW+ + E L
Sbjct: 293 VQIEALRQRVHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLNIPWAAPNKEQL 352
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
+WR +TG+P IDA M QL GW+HH R+ VA FLTR ++ WE G F L+D
Sbjct: 353 QSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRXALWQSWEHGLRXFLXYLLD 412
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + + P++F K+ DP G YIR ++P L ++P+EYI+
Sbjct: 413 ADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRXYVPELANVPQEYIH 472
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL-NGQVSEDGLK 392
EPW P +Q +C+IG YP +V +K KR + L Q L G ++G
Sbjct: 473 EPWRMPQELQENCECVIGVQYPERIV---DLAKVSKRNVHAMQTLRQSLIAGGAPDEGPP 529
Query: 393 NLRRKFEGEENQ 404
+ R E E +Q
Sbjct: 530 HCRPSNEEEVHQ 541
>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
Length = 359
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 129/260 (49%), Positives = 162/260 (62%), Gaps = 7/260 (2%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLP 58
++ G EVFS VSH+L+N I+ NGG PPLTY+ FL L G P +
Sbjct: 103 NIQRLGVELGFEVFSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPEVPVRNVT 162
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
D G E VP +L E LSP+RGGE+E L++L ++D+ WV
Sbjct: 163 AEDFQRCRAPDPGLAECYRVPLPVDLKIS---PESLSPWRGGETEGLQRLERHLTDQGWV 219
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
+F KP+ P++ L P+TT LSPY GCLS R F+ L+++Y K H+ PPVSL GQL
Sbjct: 220 TSFTKPRTVPNSLL-PSTTGLSPYFSMGCLSVRTFFYRLSNIYAQAKHHSLPPVSLQGQL 278
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
LWR+FFYTVA TPNF +M GN IC QI W D E L W+ A+TG+PWIDAIM QLR+
Sbjct: 279 LWREFFYTVASATPNFTQMAGNPICLQICWYKDAERLHKWKTAQTGFPWIDAIMTQLRQE 338
Query: 239 GWMHHLARHCVACFLTRGDM 258
GW+HHLARH VACFLTRGD+
Sbjct: 339 GWIHHLARHAVACFLTRGDL 358
>gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis]
Length = 278
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 137/180 (76%)
Query: 197 MKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRG 256
M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HHLARH VACFLTRG
Sbjct: 1 MEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 60
Query: 257 DMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNY 316
D+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+ Y PV FG++ DPNG+Y
Sbjct: 61 DLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDY 120
Query: 317 IRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
IR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+ ++ + Y
Sbjct: 121 IRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIY 180
>gi|340376121|ref|XP_003386582.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 544
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/388 (34%), Positives = 204/388 (52%), Gaps = 13/388 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF---LKLAG---QPLWASSP 56
+K A + ++ S SHTL+NP DI++ N G+ P +Y+ L L G +P P
Sbjct: 161 IKFAADSQNVKTTSFYSHTLYNPEDILRANNGRFPHSYKELRRLLPLVGRPREPFPEPDP 220
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ V L P + +P++++LG+ + + GGE+E L +L S +
Sbjct: 221 VLVLLRQNSPEDQDLEEPENRIPSLQDLGFGLEETLYTNSWVGGETEGLSRLSNFCSRRS 280
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
N +P +L + L PY++FGCLS R + L K L
Sbjct: 281 TQPN------EPITWLISKDS-LGPYIRFGCLSVRQLFSQLRQYASTSSKGQVLFAELTK 333
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LL R+F Y V P FD MK N +C Q+PW ++ AW+E RTGYPWIDA M Q+
Sbjct: 334 NLLMREFAYMVGLTVPKFDTMKDNPLCIQLPWEENERFFYAWKEGRTGYPWIDAAMRQIV 393
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW H+ R +A FLTRG +++ WEKG + F ++D + ++ W+ SCS FF
Sbjct: 394 RDGWSHYSTRQSIAVFLTRGYLWISWEKGLEFFQEHMLDFELPVSTVCWMQSSCSGFFVD 453
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y P GK+ D +G++I+ ++P L+D P +YI+ PW APL +Q +A CIIG+DYP
Sbjct: 454 FIESYDPCYIGKQMDSDGHFIKLYVPELQDFPSDYIHTPWLAPLHVQQQANCIIGKDYPK 513
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V S + C +++ ++L G
Sbjct: 514 PLVDLCSQGELCCQRVRSILTALRELYG 541
>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
Length = 542
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 214/406 (52%), Gaps = 36/406 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ GI+ VSHTL++P +I+ NGG PPLTYQ FL ++ G P P P
Sbjct: 121 IRALCRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP-----PRPT 175
Query: 60 SLSSLPPVG----------DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL- 108
+ + L + FE P + G +RGGE +AL L
Sbjct: 176 ADARLEDATFVELDPEFRRSINMFEKLPTPHHFNVYEDNMGFLAKIKWRGGEKQALLLLG 235
Query: 109 -RESISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK- 165
R + + F P + P+ + P + +S +L+FGCLS R FY + D+++NV+
Sbjct: 236 ERLKVEQHAFERGFYLPNQALPNIHDSPKS--MSAHLRFGCLSVRRFYWSVHDLFKNVQL 293
Query: 166 ------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAW 218
+ + GQL+WR++FYT++ PN+DRM+GN IC IPW+ ++LL W
Sbjct: 294 RACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPKEDLLQRW 353
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
R +TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D+DW
Sbjct: 354 RLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADW 413
Query: 279 AINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW 336
++ GNW+W+S S+F + + PV+ K+ DP+G YI+ ++P L +PKE+++EPW
Sbjct: 414 SVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELVKVPKEFVHEPW 473
Query: 337 TAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
Q + +C+IG YP ++ A +R + AL L
Sbjct: 474 RMSAEQQEQYECLIGVHYPERIIDLTMA---VQRNMLAMKALRNSL 516
>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
Length = 542
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 208/382 (54%), Gaps = 33/382 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPVSLSSLPPV 67
I+ VSHTL++P +I+ NGG PPLTYQ FL ++ G P P P + + L
Sbjct: 129 NIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP-----PRPTADARLEDA 183
Query: 68 GDV----------GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE--SISDK 115
V FE P + G +RGGE++AL L E +
Sbjct: 184 TFVELDSEFCRSLNLFEKLPAPDHFNVYTDNMGFLAKINWRGGETQALLLLDERLKVEQH 243
Query: 116 EWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-------KH 167
+ F P + P+ + P + +S +L+FGCLS R FY + D+++NV+
Sbjct: 244 AFERGFYLPNQALPNIHDSPKS--MSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301
Query: 168 TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYP 226
+ L GQL+WR++FYT++ PN+DRM+GN IC IPW+ ++LL WR +TG+P
Sbjct: 302 MTGGAHLTGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAKPKEDLLQRWRLGQTGFP 361
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D+DW++ GNW+
Sbjct: 362 LIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWM 421
Query: 287 WLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+S S+F + + PV+ K+ DP G YI+ ++P L ++P+E+++EPW + Q
Sbjct: 422 WVSSSAFERLLDSSLVTCPVALAKRLDPEGTYIKQYVPELINVPREFVHEPWRMSVEQQE 481
Query: 345 RAKCIIGRDYPAPVVSHDSASK 366
+ +C+IG YP ++ A K
Sbjct: 482 QYECLIGVHYPERIIDLSMAVK 503
>gi|351713396|gb|EHB16315.1| Cryptochrome-1 [Heterocephalus glaber]
Length = 591
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 137/190 (72%), Gaps = 8/190 (4%)
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HHLAR
Sbjct: 260 AATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLAR 319
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
H VACFLTRGD++V F+ LL+D+DW+IN G+W+WLSCSSFF Q+ Y PV F
Sbjct: 320 HAVACFLTRGDLWV--------FEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGF 371
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
G++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P+V+H AS+
Sbjct: 372 GRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASR 431
Query: 367 ECKRKLGEAY 376
++ + Y
Sbjct: 432 LNIERMKQIY 441
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ S
Sbjct: 174 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 233
Query: 63 -----SLPPVGDVGYFEISEVPTVEELG 85
+ P+ D + E VP++EEL
Sbjct: 234 EVIEKCVTPLSD-DHDEKYGVPSLEELA 260
>gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus]
Length = 266
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 137/189 (72%)
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
RM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW+HHLARH VACFLTR
Sbjct: 1 RMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 60
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGN 315
GD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+ Y PV FG++ DP+G+
Sbjct: 61 GDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGD 120
Query: 316 YIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
Y++ +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+H S+ ++ +
Sbjct: 121 YVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQI 180
Query: 376 YALNQKLNG 384
Y + G
Sbjct: 181 YQQLSRYRG 189
>gi|378728105|gb|EHY54564.1| cryptochrome [Exophiala dermatitidis NIH/UT8656]
Length = 987
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 173/295 (58%), Gaps = 43/295 (14%)
Query: 98 RGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCL 157
+GGE+ L L ISD+ ++A FEKP P+A+ PATT+LSP++ FG +S R F+ +
Sbjct: 370 KGGETTGLALLAHHISDETYIATFEKPLTAPTAFDPPATTMLSPHMHFGSVSVRRFWWAV 429
Query: 158 TDVYQNVKKHT---------SP-PVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQ 205
DV + ++ + SP PV+L GQLL+RD ++ A G F + GN + +
Sbjct: 430 QDVLEQRRRRSLENKISLPISPHPVNLPGQLLFRDMYFAAYAAVGA-TFGQAVGNPVARF 488
Query: 206 IPWS------------------------------NDDELLAAWREARTGYPWIDAIMVQL 235
+PW +E W+ TG+PWIDA+M QL
Sbjct: 489 VPWDLQSEASGSSLATSDQLSGRDPTATYMVSNPQAEEYFRRWKYGCTGFPWIDALMRQL 548
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
R+ GW+HHL RH VA FLTRG +V WE+G +VF+ L+D + A N GNW+WLSC +FF
Sbjct: 549 RQEGWIHHLGRHAVASFLTRGGCYVSWERGAEVFEEWLLDHEVACNAGNWMWLSCVAFFS 608
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
Q++R+YSPVSF KK+DP GN++R ++P L +YIYEPW AP+ Q R +C++
Sbjct: 609 QFHRVYSPVSFPKKWDPEGNFVRRYVPELTAFDAKYIYEPWKAPVVDQKRWRCLV 663
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 2 KVKDYASTAGIEVFS-PVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ 49
+V A G++V P TLF+ D+++ NGGKP L+ F+K AG+
Sbjct: 165 QVTQLAEAMGVKVLCVPGGRTLFDSDDVVRANGGKPTLSMNQFMKAAGR 213
>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
Length = 626
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/367 (38%), Positives = 194/367 (52%), Gaps = 61/367 (16%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSPLP-- 58
A AG+EV TL++ DI++ NGGKP ++ K + P+ A + LP
Sbjct: 121 AREAGVEVIMRSGRTLWDSDDIVRANGGKPTMSMSQLQKAGSRVGDIPRPVAAPTKLPDP 180
Query: 59 ----VSLSSLPP--------------VGDVGYFEISE------VPTVEELGYKGYGQEEL 94
V P GD GY I+ + T+EELG+
Sbjct: 181 GEMPVDFEQERPDTTPDFNAAQRTVEAGDQGYASIAGPNGDFGIETMEELGFP----SAT 236
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
+P RGGES AL+ L+E + D ++ A F KP+ P+A+ +TT+LSP++ FG LS R FY
Sbjct: 237 TPHRGGESRALETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTLLSPHMHFGSLSVREFY 296
Query: 155 -QCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV--AFGTPNFDRMKGNRICKQIPW--- 208
Q + V K + PP SL GQLL+RD ++ A G F++ +GN C+ IPW
Sbjct: 297 WQAVDAVKAFGKGASGPPESLTGQLLFRDMYFAAQAALGY-KFEQTRGNAYCRFIPWHLP 355
Query: 209 ------------------SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
D W+ +TG+PWIDA+M QL + GW+HHL RH VA
Sbjct: 356 SKVNTETGLITGQYHVDSEEADLWFRRWKAGQTGFPWIDALMRQLAEEGWIHHLGRHSVA 415
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKY 310
CFLTRG ++ WE+G +VF+ LID + A N GNW WLSC++FF QY R YSPVSFG+K+
Sbjct: 416 CFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCAAFFSQYFRCYSPVSFGQKW 475
Query: 311 DPNGNYI 317
D G I
Sbjct: 476 DKEGLLI 482
>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens]
Length = 529
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 145/376 (38%), Positives = 201/376 (53%), Gaps = 20/376 (5%)
Query: 20 HTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVP 79
H LF+P +++ GGK P T + +K A + S VP
Sbjct: 140 HLLFDPREVLGACGGKAPTTMPAMVKAAAA---LGAVPAPLDPPATLPPPPDGLPDSSVP 196
Query: 80 TVEELGYKGYGQEELSPFRGGESEALKKLRESISDK--EWVANFEKPKGDPSAY-LKPAT 136
T+E +GY+ GGES L +L +++ +W FEKPK + + + P+T
Sbjct: 197 TLEAMGYEAPPAAAFG-VAGGESAGLARLEAALARDGGKWARAFEKPKTKSTKFDVDPST 255
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDR 196
TVLSPYLKFGC+S+R F L DVY H PP SL+GQL +R+ Y A
Sbjct: 256 TVLSPYLKFGCVSARLFRARLADVYAG-GSHAQPPTSLLGQLYFREMAYANALKHGAAFA 314
Query: 197 MKGNRICKQIPWSN------DDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
+ +C IPW + L AW TGYP++DA M QLR+ GW+HHLARH VA
Sbjct: 315 ASPSPVCADIPWDDPATDAAAAARLRAWEAGETGYPFVDAAMRQLRETGWIHHLARHAVA 374
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKK 309
CFLTRGD+++ W +G VFDR L+D+DWA+NN NWL L+ +S+ + R+YSPV K+
Sbjct: 375 CFLTRGDLWLPWTEGARVFDRDLLDADWAVNNFNWLGLAGVASWSPPFFRVYSPVPNHKQ 434
Query: 310 Y-----DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
D G Y+ F+P L+ +P +Y Y PWTAP + A ++G YP P+V H
Sbjct: 435 SSLNVDDAAGAYVDRFVPELRKLPAKYKYAPWTAPAAVLAAAGVVLGDTYPRPLVDHKVQ 494
Query: 365 SKECKRKLGEAYALNQ 380
SK+ + EA N+
Sbjct: 495 SKDNIARFKEAQQRNR 510
>gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus]
Length = 164
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 130/163 (79%)
Query: 166 KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGY 225
K ++PP+SL GQLLWR+FFYT A P FD+M+GN IC +IPW + E LA W EA+TG+
Sbjct: 1 KTSTPPLSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPWDKNPEALAKWAEAKTGF 60
Query: 226 PWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNW 285
PWIDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W
Sbjct: 61 PWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSW 120
Query: 286 LWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMP 328
+WLSCSSFF Q+ Y PV FG++ DPNG++IR +LP+L+ P
Sbjct: 121 MWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFP 163
>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
Length = 517
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 204/375 (54%), Gaps = 13/375 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF---LKLAGQPLW-ASSPLP 58
+K + ++ S SHTL++PA++I N G+ PL+Y+ F + L G+P P P
Sbjct: 137 IKILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMGKPASPIPEPHP 196
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
+SL P ++ ++P +++LG + + GGE+EAL +L S + +
Sbjct: 197 MSLCMKAPPSELVPEPEGKIPKLQDLGLSDEFALYTNSWVGGETEALSRLSSFCSRRAAI 256
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
N +P +L T LSPY+KFGCLS R + L K L L
Sbjct: 257 PN------EPVHWLMSKDT-LSPYIKFGCLSVRQLFSQLLQFASTSSKGQELFELLTKNL 309
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
L R+F + V +P FD M+GN +C Q+PW +++ + A+R +TGYPWIDAI+ Q+R+
Sbjct: 310 LLREFAFLVGSSSPKFDVMEGNSLCIQLPWESNNVFIQAFRNGQTGYPWIDAIIRQIRQD 369
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GW H LAR +A FLTRG +++ W G++ F +ID + +++ W+ SCS FF
Sbjct: 370 GWAHFLARQSIAVFLTRGYLWISWVLGKEFFQEFMIDFELPVSSVCWMQSSCSGFFCTQI 429
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD-YPAP 357
Y P GK+ D +G+YI+ ++P LKD P EY+++PW ++ T A + R+ YP P
Sbjct: 430 ESYDPCLVGKQIDTDGHYIKTYVPELKDFPSEYVHQPWKCS-SLHTEASWLCDREQYPKP 488
Query: 358 VVSHDSASKECKRKL 372
++ + C +++
Sbjct: 489 IIDVCKQGELCCKRV 503
>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 193/343 (56%), Gaps = 16/343 (4%)
Query: 12 IEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVG 71
I+ S + HTL++ ++I KNGGK P+ F +P P + +G
Sbjct: 125 IKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTVTAKHFKLGSK- 183
Query: 72 YFEISEVPTVEELGYKGYGQE---ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
+ L + +G + L +RGGE +ALK L+ I+D +G
Sbjct: 184 ---KIIIFKKSILAFGVWGHQAPRSLPIYRGGERQALKVLQAKINDPTLFTLNGFNQGVK 240
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVA 188
+ P TT LS Y +GC+S+R+F++ + + S + L GQ+++R+FFY A
Sbjct: 241 TKL--PHTTYLSAYQNYGCISTRHFWKAAEKLPE------SKTIMLRGQIMYREFFYVAA 292
Query: 189 FGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHC 248
NF +M GNRIC+QI W ++E L+AW+E RTGYP+IDA+M QL G++HHL R
Sbjct: 293 SQVNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWA 352
Query: 249 VACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN-RIYSPVSFG 307
VA FLT G ++++WE G+++F+ ID D+A+N G W+W + S+F + + PV F
Sbjct: 353 VASFLTNGQLWLNWEHGQEMFEEHQIDGDYAMNAGCWMWCTGSAFMDSISEKTLDPVKFA 412
Query: 308 KKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
+++DP G++ R + P LK+MP +Y++ PW AP+ +Q A+ I
Sbjct: 413 RRWDPEGHFTRKYCPELKNMPLKYLFSPWEAPVNVQRYAQFFI 455
>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
Length = 525
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 214/388 (55%), Gaps = 36/388 (9%)
Query: 20 HTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFE----I 75
HTL++P +II N G+ PL+ F + + P P + + V E I
Sbjct: 136 HTLYDPQEIIDANEGQVPLSLDEFYSVIPSLDVPALPAPTVTAEMFKSCSVRIEENHQAI 195
Query: 76 SEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESI-------------SDKEWVANFE 122
VPT+ LG + P GGE+ AL++L+ + + K +E
Sbjct: 196 YGVPTMASLGLECPRAHTRWP--GGETVALERLKYKMKQNTLYEFNQGPSTSKAANHEYE 253
Query: 123 KP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
P +P +P TT LSPY+ G +S R F+ + + ++ ++ GQ+++R
Sbjct: 254 IPGTSEPWFETQPETTGLSPYINLGSISPRTFWHGAKNCSEKMR------TTVQGQMIYR 307
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSN--DDELLAAW----REARTGYPWIDAIMVQL 235
+FFYTVA+ NF R++GNRICK I WS+ +E A W ++ TGYPWIDA + Q+
Sbjct: 308 EFFYTVAYTVNNFTRIEGNRICKDIKWSDPKTNERAAEWIEKFKQGMTGYPWIDAAVRQM 367
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
+ GW+ H++R +A FLT G M+ WE G+ +F+ L+D+D+A+N GN+LW++ S+F
Sbjct: 368 KTEGWITHISRFSLASFLTVGQMWCSWEVGQQLFEEFLLDADYALNAGNFLWVTGSAFAN 427
Query: 296 QY-NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Q + PV +K+D +G++IR + P LK++P +YI PW AP +Q +A+ IIG DY
Sbjct: 428 QIPVKALDPVKLARKWDTHGSFIRRYCPELKNLPTQYICAPWKAPQDVQLKARAIIGVDY 487
Query: 355 PAPVVSHDSASKECKRKLGEAYALNQKL 382
PAP++ +A+ + L + A NQ++
Sbjct: 488 PAPML---NAATMRIQNLNKIKAHNQQI 512
>gi|302745158|gb|ADL62682.1| cryptochrome 2b, partial [Phreatichthys andruzzii]
Length = 180
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 97/179 (54%), Positives = 136/179 (75%)
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+GN IC +IPW + E LA W EA+TG+PWIDAIM QLR+ GW+H+LAR+ V CFLTRGD
Sbjct: 1 EGNPICIRIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCFLTRGD 60
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
++++WE+G +F+ LL+D+DW++N G+WL SCSSFF Q+ Y PV FG++ DPNG++I
Sbjct: 61 LWINWEEGMKIFEELLLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRRIDPNGDFI 120
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
R +LPVL+D P ++IY+PW AP +Q AKC+IG DYP P+V+H AS+ ++ + Y
Sbjct: 121 RCYLPVLRDFPAKFIYDPWNAPDDVQRAAKCVIGMDYPKPMVNHAEASRLNIERMRQIY 179
>gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus]
gi|205694137|sp|B0WRR9.1|CRY1_CULQU RecName: Full=Cryptochrome-1
gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus]
Length = 499
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/349 (36%), Positives = 193/349 (55%), Gaps = 17/349 (4%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELG--YKGYGQEELSPFRGGESEALK 106
+P+ A S V LP + P E+ G Y+G + GGE++AL+
Sbjct: 126 RPVGAPSFEFVEFGRLPSILSTELKLFQRAPVPEDFGIYYEGNADIARQRWTGGEAKALE 185
Query: 107 KLRESISDKE--WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L + +E + + P +L P ++ +S L+FGCLS R FY C+ D++ V
Sbjct: 186 LLGRRLKQEEEAFREGYYLPTQARPDFLAPPSS-MSAALRFGCLSVRMFYWCVHDLFARV 244
Query: 165 K-----KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW-SNDDELLAAW 218
+ KH + GQL+WR++FYT++ P++ M+ N IC IPW D+ L W
Sbjct: 245 QANNQLKHPGGH-HITGQLIWREYFYTMSVHNPHYAVMELNPICLNIPWYEAKDDSLDRW 303
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
+E RTG+P IDA M QL GW+HH+ R+ A FLTRG +++ WE G F + L+D+DW
Sbjct: 304 KEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAGVQHFLKYLLDADW 363
Query: 279 AINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW 336
++ GNW+W+S S+F + SPV+ ++ DP G Y++ +LP L+ P Y++EPW
Sbjct: 364 SVCAGNWMWVSSSAFEKLLDSSSCTSPVALARRLDPKGEYVKRYLPELEKFPALYVHEPW 423
Query: 337 TAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
AP +Q + C+IG+DYPAP+V+ +K K+ A+ QKL Q
Sbjct: 424 KAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNANKMN---AIRQKLLDQ 469
>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
Length = 393
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 174/302 (57%), Gaps = 25/302 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG----------QPLW 52
V++ ++ VSHTL++P +II+ NGG PPLT+ F + P +
Sbjct: 102 VRELLDKKNVQCVEKVSHTLWDPYEIIENNGGSPPLTFSLFNLVTSTIGPPPRPVEDPDF 161
Query: 53 ASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEE---LSPFRGGESEALKKL- 108
LPVS + G +P++E+L + +E+ L + GGES+AL+ L
Sbjct: 162 TDISLPVSQNHDKQFG---------IPSLEDLNVRPECEEQNKRLVEWLGGESKALELLA 212
Query: 109 -RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH 167
R +K + + P L P + LS +L+FGCLS R FY + D ++ VK
Sbjct: 213 IRMKHEEKAYENGYVMPNQYHPDLLSPPLS-LSAHLRFGCLSVRKFYWSIHDKFEEVKPS 271
Query: 168 TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
PVSL QL+WR++FYT+A N+D+M+ N IC IPW ++ E W + TGYPW
Sbjct: 272 MGAPVSLSAQLMWREYFYTMAINNINYDKMETNPICLNIPWYDNPEHEEKWTQGETGYPW 331
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDAIM QLR GW+HH+ARH V+CFLTRGD++++WE G VF + L+D+DW++ GNW+W
Sbjct: 332 IDAIMKQLRYEGWVHHVARHAVSCFLTRGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMW 391
Query: 288 LS 289
LS
Sbjct: 392 LS 393
>gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella]
Length = 166
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 130/167 (77%), Gaps = 1/167 (0%)
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
N+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL GQLL
Sbjct: 1 NYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLL 59
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ G
Sbjct: 60 WREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEG 119
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
W+HHLARH VACFLTRGD++V WE G VFD +L+D+D+++N G+W+
Sbjct: 120 WIHHLARHAVACFLTRGDLWVSWESGVRVFDDVLLDADFSVNAGSWM 166
>gi|13543860|gb|AAH06077.1| Cry2 protein, partial [Mus musculus]
Length = 243
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 121/165 (73%)
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D++
Sbjct: 1 EGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFS 60
Query: 280 INNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
+N G+W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP
Sbjct: 61 VNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAP 120
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
++Q AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 121 ESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 165
>gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin]
Length = 244
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 122/167 (73%)
Query: 218 WREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSD 277
W E +TG+PWIDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE G VFD LL+D+D
Sbjct: 1 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60
Query: 278 WAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
+++N G+W+WLSCS+FF Q+ Y PV FG++ DP+G+Y++ +LP LK P YIYEPW
Sbjct: 61 FSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWN 120
Query: 338 APLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
AP ++Q AKCIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 121 APESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQLSRYRG 167
>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
Length = 662
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 126/193 (65%), Gaps = 21/193 (10%)
Query: 205 QIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEK 264
QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HH AR ACFLTRGD+++ WE
Sbjct: 452 QIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWEC 511
Query: 265 GR---------------------DVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
G VF+ LL+D+DW++N G+W+WLSCS+FF Q+ + Y P
Sbjct: 512 GMKVGGPPWSRRRRRRLSARLLPQVFEELLLDADWSVNAGSWMWLSCSAFFQQFFKCYCP 571
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
V FG++ DP+G+YIR ++P+LKD P YIYEPW AP +Q A C++G DYP P+++H
Sbjct: 572 VGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHAE 631
Query: 364 ASKECKRKLGEAY 376
S+ ++ + Y
Sbjct: 632 GSRLNIERMKQVY 644
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP-VSL 61
+ A G+E SHTL+N I++ N PPLT++ F + + PLP V+
Sbjct: 149 IIKMAQQFGVETIVRNSHTLYNLDRIVEMNNNSPPLTFKRFQTIVSRLELPRRPLPSVTQ 208
Query: 62 SSL----PPVGDVGYFEISEVPTVEELG 85
+ PV D + ++ +P++EEL
Sbjct: 209 QQMDKCGTPVAD-NHDQLYSIPSLEELA 235
>gi|375267550|emb|CCD28225.1| DNA photolyase, cryptochrome, partial [Plasmopara viticola]
Length = 259
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 140/227 (61%), Gaps = 18/227 (7%)
Query: 80 TVEELGYKGYGQEELSPF-RGGESEALKKLRESISDKEWVANFEKPKGDPSAYL-KPATT 137
TV +L Y E F GGE +AL+ L D++ VA FEKPK P+ P+TT
Sbjct: 33 TVPDLASFDYETPEKHSFIYGGEQKALETLDNYCKDEDRVARFEKPKTSPAQPPPNPSTT 92
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
VLSPY+ +GCLS R FY + D+ + KK + PPVSL+GQLLWRDF++ P F
Sbjct: 93 VLSPYMFYGCLSPRTFYHRVQDIQKRRKKGSQPPVSLIGQLLWRDFYHCHGHDNPYFXXX 152
Query: 198 KG--NRICKQIPWSND----------DEL----LAAWREARTGYPWIDAIMVQLRKWGWM 241
G N + Q+ D D+L AWR+ RTG+PWIDAIM+QL++ GWM
Sbjct: 153 GGESNLLTSQLAVPXDSRERKGHERRDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWM 212
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
HHLARH VACFLTRGD+++ W +G +VF LID DW++N GNWLWL
Sbjct: 213 HHLARHAVACFLTRGDLYISWVRGLEVFQERLIDHDWSVNAGNWLWL 259
>gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens]
Length = 278
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 122/179 (68%), Gaps = 15/179 (8%)
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+W
Sbjct: 1 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMW 60
Query: 288 LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
LSCSSFF Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +Q AK
Sbjct: 61 LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEIVQKAAK 120
Query: 348 CIIGRDYPAPVVSHDSAS-------------KECKRKLGEAYAL--NQKLNGQVSEDGL 391
C+IG YP P+V+H AS C R LG + NG++S DG+
Sbjct: 121 CVIGVHYPKPMVNHAEASCLNIERMKQIYQQLSCYRGLGLLATVPSTSNGNGEMSSDGM 179
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 180/360 (50%), Gaps = 40/360 (11%)
Query: 21 TLFNPADIIQKNGGKPPLTYQSF---------------LKLAGQPLWASSPLPVSLSSLP 65
+F+P D+ + G+P Y + L+ PL +P V+ ++P
Sbjct: 130 VVFSPDDV-RTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRPAPEAVADQTVP 188
Query: 66 PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPK 125
D+G +P G + +G L+ F ++ +A + + +
Sbjct: 189 DHADLGIVVSQRIPP----GGETHGAARLAAF------------VDLAAAHSIAGYAEGR 232
Query: 126 GDPSAYLKPATTVLSPYLKFGCLSSRYFYQC---LTDVYQNVKKHTSPPVSLVGQLLWRD 182
+PAT+ LSPYL+FGC++ R + L D+ + + + +G+L WRD
Sbjct: 233 ---DLLAEPATSRLSPYLRFGCVAPRQALRAALRLLDIVGDDHRTVRSIETWIGELAWRD 289
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+Y + + P+ R + W ND L AW+E RTGYP IDA M QLR+ WMH
Sbjct: 290 FYYQILWHYPHVVRRSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMH 349
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIY 301
+ AR VA FLT+ D+ + W G F + L+D D A NNG W W + + Q Y RI+
Sbjct: 350 NRARMIVASFLTK-DLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIF 408
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+PVS G+K+DP G Y+R +LP L +P YI+ PWT P Q R +IGRDYPAP+V H
Sbjct: 409 NPVSQGQKFDPKGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVDH 468
>gi|339649212|gb|AEJ87227.1| putative light-receptive cryptochrome [Platynereis dumerilii]
Length = 365
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 169/286 (59%), Gaps = 12/286 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK---LAGQPLWASSPLPV 59
VKD +T G++ F SH L++P + NGG+PP TY+ F + L G+P P P
Sbjct: 76 VKDLCATKGVKWFDYNSHLLWDPKAVCDANGGRPPHTYKLFCQVTDLLGKPE-TPHPDPD 134
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF---RGGESEALKKL--RESISD 114
PV D + + +PT++ELG + +E+ PF +GGE+ AL+ L R I
Sbjct: 135 FSHVQMPVSD-DFDDKFGLPTLKELGCEPECEEQEKPFNKWQGGETGALELLETRLMIER 193
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ A + P + P + +SP+L+FG LS R FY L + Y V +L
Sbjct: 194 TAYKAGYIMPNQYIPDLVGPPRS-MSPHLRFGALSIRKFYWDLHNNYAEVCGGEWLG-AL 251
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
QL+WR++FY +++G P+FD+M+GN IC QIPW D+E L W++ +TG+PWIDA M Q
Sbjct: 252 TAQLVWREYFYCMSYGNPSFDKMEGNPICLQIPWYKDEEALEKWKQGQTGFPWIDACMRQ 311
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
LR GWMHH+ RH VACFLTRGD+++ W G + F + ++D DW++
Sbjct: 312 LRYEGWMHHVGRHAVACFLTRGDLWISWVDGLEAFYKYMLDGDWSV 357
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 171/328 (52%), Gaps = 35/328 (10%)
Query: 37 PLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP 96
P+ Q +L PL AS PLP +L+ L P + VP
Sbjct: 162 PVRVQGVPELTAIPLPASDPLP-ALNDLLPTAP------TSVPR---------------- 198
Query: 97 FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC 156
F GE+ A L I + +AN+ + T+ LSPYL+FG LS R QC
Sbjct: 199 FATGETAARAALEHFIHNA--IANYATAR---DLVAIAGTSRLSPYLRFGVLSPR---QC 250
Query: 157 LTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLA 216
+ V P S +G+L+WR+F+ V + P+ R + +I W ND L A
Sbjct: 251 V--VAARAAPSGPGPESWIGELIWREFYIQVLYHFPHALRGSFKPVYDRIVWPNDPALFA 308
Query: 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS 276
AW++ RTGYP +DA M QL++ GWMH+ AR VA FLT+ D+ + W G F LLID
Sbjct: 309 AWQQGRTGYPIVDAAMRQLQQEGWMHNRARMIVASFLTK-DLLIDWRWGERHFMHLLIDG 367
Query: 277 DWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
D A NNG W W + + Q Y RI++PVS G+K+DP+G Y+R ++P L +P YI+EP
Sbjct: 368 DPAANNGGWQWAAGTGTDAQPYFRIFNPVSQGQKFDPDGAYVRRYVPELAGVPTRYIHEP 427
Query: 336 WTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
P + Q RA IGRDY APVV H +
Sbjct: 428 HKMPPSEQVRAGVQIGRDYSAPVVDHAT 455
>gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei]
Length = 139
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 85/139 (61%), Positives = 107/139 (76%)
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW+HHLARH VACF
Sbjct: 1 RFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACF 60
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDP 312
LTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+ Y PV FG++ DP
Sbjct: 61 LTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDP 120
Query: 313 NGNYIRHFLPVLKDMPKEY 331
+G+YIR +LP LK P Y
Sbjct: 121 SGDYIRRYLPKLKGFPSRY 139
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 20/346 (5%)
Query: 42 SFLKLAGQPLWASSPLPVSLSSLPPVGD------VGYFEISEVPTVEELGYKGYGQEELS 95
+ LK G P +P S PPVG + E E + + + ++
Sbjct: 133 ALLKDDGTPYTVFTPYSRRWRSYPPVGAHEILPAPARLAVPESIVGEPIPKQPHLDDDTG 192
Query: 96 PFRGGESEALKKLRE-SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR--- 151
PF GE+EA +LR + D+ + + + + P +T+ LSPYL+FG LS+R
Sbjct: 193 PFPSGEAEAQARLRRFTTGDEAPIYAYAQARDFPDL---DSTSKLSPYLRFGMLSARQAA 249
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND 211
D N ++ T L +L+WRDF+Y++ + P+ R R I W N+
Sbjct: 250 LAAYQAMDAAANAEQRTGAETWLT-ELIWRDFYYSILYHFPHVARGCFQRAYDAIIWENN 308
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
AAW TGYP+IDA M QL GWMH+ AR VA FL + D+ + W G F +
Sbjct: 309 PTHFAAWCAGLTGYPFIDAAMRQLAATGWMHNRARMAVASFLVK-DLLIDWRWGEKWFMQ 367
Query: 272 LLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
L+D D A NNG W W + + Y RI++P + G+K+DP G YIR ++P L+ +P
Sbjct: 368 RLLDGDLAANNGGWQWSAGVGTDAAPYFRIFNPTAQGQKFDPRGVYIRRWVPELRLVPDR 427
Query: 331 YIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376
YI+EPW P + Q RA CIIG++YPAP+V H A ++++ EAY
Sbjct: 428 YIHEPWRMPRSEQMRAGCIIGQNYPAPIVDHAVA----RQRVLEAY 469
>gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus]
Length = 140
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 107/139 (76%)
Query: 208 WSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRD 267
W D E L W+ A+TG+PWIDAIM QLR+ GW+HHLARH ACFLTRGD+++ WE+G
Sbjct: 2 WYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMK 61
Query: 268 VFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDM 327
VF+ LL+D+D++IN GNW+WLS S+FF+ Y RI+ PV FG++ DP G YIR +LP+LK+
Sbjct: 62 VFEELLLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTDPEGQYIRKYLPILKNF 121
Query: 328 PKEYIYEPWTAPLTIQTRA 346
P +YIYEPWTA Q +A
Sbjct: 122 PSKYIYEPWTASEEEQKQA 140
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 191/363 (52%), Gaps = 33/363 (9%)
Query: 25 PADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL-SSLPPVGDVGYFEISEVPTVEE 83
P ++ K G P + F + A + L +SP VSL P V D ++ +P E
Sbjct: 125 PPSLVLKPDGSPYTVFTPFSR-AWKALPFASPSVVSLPERFPAVPD----KLVSLPIPEA 179
Query: 84 LGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYL 143
+ L F GE EAL++L +S + + D +P T+ LSPY
Sbjct: 180 IF--------LQDFPPGELEALRRLENFLSGPAREYADGRNRLD-----QPGTSFLSPYF 226
Query: 144 KFGCLSSRYFYQCLTDVYQNVKKHTSPPV-----SLVGQLLWRDFFYTVAFGTPNFDRMK 198
+FG LS R+ + V + ++ +SP + + +L+WR+F+ ++ + P+ M
Sbjct: 227 RFGMLSPRW---AVFQVRKMIQITSSPDEKRGYEAWLNELIWREFYISILYHYPHVLAMA 283
Query: 199 GNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDM 258
N + I W + L AW+E +TGYP +DA M QL+ GWMH+ AR VA FLT+ D+
Sbjct: 284 FNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVASFLTK-DL 342
Query: 259 FVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
++W++G F + L+D D A NNG W W + + Y RI++PV K+DP G YI
Sbjct: 343 LINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFDPQGRYI 402
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYA 377
+ ++P L +P E+I+ PWT PL++Q IGRDYP P+V H +E + ++ EAY
Sbjct: 403 KTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDH----QEVRGRVLEAYR 458
Query: 378 LNQ 380
+Q
Sbjct: 459 TSQ 461
>gi|422759394|ref|ZP_16813156.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 474
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 148/267 (55%), Gaps = 12/267 (4%)
Query: 103 EALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
EA ++L + ++ +A+++ + PS + T+ LSPYL+ G +S R YQ ++
Sbjct: 200 EAKERLNHFVDNQ--LADYDTTRDFPS---RCGTSFLSPYLRLGMVSIRTVYQAVSQA-- 252
Query: 163 NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREAR 222
+S + +L WRDF++ V PN ++ + + W + AW+E +
Sbjct: 253 ---PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDENPATFKAWKEGQ 309
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP IDA M QLR GWMH+ R VA FLT+ D+ + W G F LID D A N
Sbjct: 310 TGYPIIDAAMKQLRATGWMHNRLRMVVASFLTK-DLQIDWRLGEAYFQEQLIDYDAASNI 368
Query: 283 GNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W S + Y RI++PV+ GK++DP+G++IR +LP L +P++Y+YEPW P
Sbjct: 369 GGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGDFIRSYLPSLVSVPQKYLYEPWKMPEA 428
Query: 342 IQTRAKCIIGRDYPAPVVSHDSASKEC 368
+Q CIIG+DYP P+V H K
Sbjct: 429 LQESIACIIGKDYPHPLVDHAEQRKRA 455
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 187/374 (50%), Gaps = 42/374 (11%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-----LAGQPL------ 51
+K AG E S +F ++ +G +P Y + K LA +P+
Sbjct: 111 IKQALREAGYEAHSFKDTVIFEMKEVATADG-RPYTVYTPYAKRWRSRLAAEPVTVQDMP 169
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
A+ PLPVS LP + D+ + + P L F GE+ AL+ L
Sbjct: 170 RLATIPLPVS-EPLPHLTDL----LPDAPAT------------LPRFPAGEAVALEALER 212
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP 170
+ +A++ + + T+ LSPYL+ G LS R QC+
Sbjct: 213 FVRGP--LASYAQGR---DLMAVAGTSRLSPYLRLGVLSPR---QCVAAALAAPPGPGPE 264
Query: 171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
S +G+L+WRDF+ V + P+ R +I W ND L AAW++ TGYP +DA
Sbjct: 265 --SWIGELIWRDFYVQVLYHFPHALRGSFKPAYNRIDWPNDPVLFAAWQQGLTGYPIVDA 322
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
M QL++ GWMH+ AR VA FLT+ D+ + W G F LLID D A NNG W W +
Sbjct: 323 AMRQLQREGWMHNRARMIVASFLTK-DLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAG 381
Query: 291 SSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Q + RI++PVS G+K+DP G Y+R ++P L ++P YI+EP L Q +A +
Sbjct: 382 TGTDAQPFFRIFNPVSQGQKFDPEGAYVRRYVPELVNVPTRYIHEPHKMSLAEQRKAGVL 441
Query: 350 IGRDYPAPVVSHDS 363
IGRDYPAP+V H +
Sbjct: 442 IGRDYPAPIVDHAT 455
>gi|156752076|gb|ABU93790.1| cryptochrome 1 [Carassius auratus]
Length = 132
Score = 188 bits (477), Expect = 6e-45, Method: Composition-based stats.
Identities = 79/128 (61%), Positives = 100/128 (78%)
Query: 188 AFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARH 247
A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+ GW+HHLARH
Sbjct: 5 ATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARH 64
Query: 248 CVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFG 307
VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q+ Y PV FG
Sbjct: 65 AVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFG 124
Query: 308 KKYDPNGN 315
++ DPNG+
Sbjct: 125 RRTDPNGD 132
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 136/239 (56%), Gaps = 11/239 (4%)
Query: 133 KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH---------TSPPVSLVGQLLWRDF 183
+PAT+ LSPYL+FGC++ R + ++ + T + +G+L WRDF
Sbjct: 237 EPATSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDF 296
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+Y + + P+ R + W ND L AW+E RTGYP +DA M QL + WMH+
Sbjct: 297 YYQILWHHPHVLRSAFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHN 356
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYS 302
AR VA FLT+ D+ + W G F + L+D D A NNG W W + + Q Y RI++
Sbjct: 357 RARMIVASFLTK-DLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFN 415
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
PVS G+ +DP G Y+R +LP L+ +P YI+ PWT P Q R IIGRDYPAPVV H
Sbjct: 416 PVSQGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDH 474
>gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 474
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 145/267 (54%), Gaps = 12/267 (4%)
Query: 103 EALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
EA ++L + ++ +A+++ + PS + T+ LSPYL+ G +S R YQ ++
Sbjct: 200 EAKERLNHFVDNQ--LADYDTTRDFPS---RCGTSFLSPYLRLGMVSIRTVYQAVSQA-- 252
Query: 163 NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREAR 222
+S + +L WRDF++ V PN ++ + + W + AW+E +
Sbjct: 253 ---PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDENPAAFKAWKEGQ 309
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP IDA M QL GWMH+ R VA FLT+ D+ + W G F LID D A N
Sbjct: 310 TGYPIIDAAMKQLLATGWMHNRLRMVVASFLTK-DLQIDWRLGEAYFQEQLIDYDAASNI 368
Query: 283 GNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W S + Y RI++PV+ GK++DP+G +IR +LP L +P+ Y+YEPW P
Sbjct: 369 GGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIRSYLPSLVSVPQTYLYEPWKMPEA 428
Query: 342 IQTRAKCIIGRDYPAPVVSHDSASKEC 368
+Q CIIG+DYP P+V H K
Sbjct: 429 LQESIACIIGKDYPHPLVDHAEQRKRA 455
>gi|433459950|ref|ZP_20417586.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432192066|gb|ELK48979.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 474
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 192/363 (52%), Gaps = 17/363 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-PLWASSPLPVS 60
+V+ Y ++ ++V+ + H + + AD ++K G + +LK Q P A +
Sbjct: 111 QVEKYVTSLDVDVYHYLDHHI-HGADEVKKQDGGFYKVFTPYLKKWKQLPKPAVQKVDDE 169
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG-GESEALKKLRESISDKEWVA 119
L V + F+ E Y ++ + F G GE++A +L + + +
Sbjct: 170 LLKKAAVDERASFKEGES------AYADLLEKIEADFGGVGEADAWARLEQFLDAD--IY 221
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
++++ + P+ T+++S YL+ G +S R Y + D + +K T + + +L
Sbjct: 222 DYDERRDFPAV---DGTSLMSRYLRTGAISVRSVYHQIHDQV-DFRKKTEGVETYISELA 277
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WRDF+ + PN + + IPW+ND+++L W+E RTG+P IDA M QL + G
Sbjct: 278 WRDFYNMIYHFYPNAHDEEVVEKYQGIPWNNDEDVLERWKEGRTGFPIIDAAMRQLNESG 337
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYN 298
WMH+ R VA FLT+ D+ + W KG F L+D D A N G W W S + Y
Sbjct: 338 WMHNRLRMAVASFLTK-DLLMDWRKGERYFQEKLVDYDPASNIGGWQWAASTGTDPVPYF 396
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
R+++P +++DP+G +I+ +LP L+D+PK+YI+EP P Q +AKC+IG DYP P+
Sbjct: 397 RVFNPTRQSERFDPHGRFIKEWLPELRDVPKKYIHEPAKMPENEQEKAKCMIGEDYPEPL 456
Query: 359 VSH 361
V H
Sbjct: 457 VDH 459
>gi|386317413|ref|YP_006013577.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410495305|ref|YP_006905151.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417752618|ref|ZP_12400804.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771615|gb|EGL48541.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|410440465|emb|CCI63093.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 474
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 144/267 (53%), Gaps = 12/267 (4%)
Query: 103 EALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
EA ++L + ++ +A+++ + PS + T+ LSPYL+ G +S R YQ ++
Sbjct: 200 EAKERLNHFVDNQ--LADYDTTRDFPS---RCGTSFLSPYLRLGMVSIRTVYQAVSQA-- 252
Query: 163 NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREAR 222
+S + +L WRDF++ V PN ++ + + W + AW+E +
Sbjct: 253 ---PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDENPAAFKAWKEGQ 309
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP IDA M QL GWMH+ R VA FLT+ D+ + W G F LID D A N
Sbjct: 310 TGYPIIDAAMKQLLATGWMHNRLRMVVASFLTK-DLQIDWRLGEAYFQEQLIDYDAASNI 368
Query: 283 GNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W S + Y RI++PV+ GK++DP+G +IR +LP L +P+ Y+YEPW P
Sbjct: 369 GGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIRSYLPSLVSVPQTYLYEPWKMPEA 428
Query: 342 IQTRAKCIIGRDYPAPVVSHDSASKEC 368
+Q CIIG DYP P+V H K
Sbjct: 429 LQESIACIIGEDYPHPLVDHAEQRKRA 455
>gi|408402028|ref|YP_006859992.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968257|dbj|BAM61495.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 474
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 144/267 (53%), Gaps = 12/267 (4%)
Query: 103 EALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
EA ++L + ++ +A+++ + PS + T+ LSPYL+ G +S R YQ ++
Sbjct: 200 EAKERLNHFVDNQ--LADYDTTRDFPS---RCGTSFLSPYLRLGMVSIRTVYQAVSQA-- 252
Query: 163 NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREAR 222
+S + +L WRDF++ V PN ++ + + W + AW+E +
Sbjct: 253 ---PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDENPAAFKAWKEGQ 309
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP IDA M QL GWMH+ R VA FLT+ D+ + W G F LID D A N
Sbjct: 310 TGYPIIDAAMKQLLATGWMHNRLRMVVASFLTK-DLQIDWRLGEAYFQEQLIDYDAASNI 368
Query: 283 GNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W S + Y RI++PV+ GK++DP+G +IR +LP L +P+ Y+YEPW P
Sbjct: 369 GGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIRSYLPSLVSVPQTYLYEPWKMPEA 428
Query: 342 IQTRAKCIIGRDYPAPVVSHDSASKEC 368
+Q CIIG DYP P+V H K
Sbjct: 429 LQESIACIIGEDYPHPLVDHAEQRKRA 455
>gi|417927065|ref|ZP_12570453.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340764939|gb|EGR87465.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 474
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 144/267 (53%), Gaps = 12/267 (4%)
Query: 103 EALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
EA ++L + ++ +A+++ + PS + T+ LSPYL+ G +S R YQ ++
Sbjct: 200 EAKERLNHFVDNQ--LADYDTTRDFPS---RCGTSFLSPYLRLGMVSIRTVYQAVSQA-- 252
Query: 163 NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREAR 222
+S + +L WRDF++ V PN ++ + + W + AW+E +
Sbjct: 253 ---PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAIQEAFRHLEWDENPAAFKAWKEGQ 309
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP IDA M QL GWMH+ R VA FLT+ D+ + W G F LID D A N
Sbjct: 310 TGYPIIDAAMKQLLATGWMHNRLRMVVASFLTK-DLQIDWRLGEAYFQEQLIDYDAASNI 368
Query: 283 GNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W S + Y RI++PV+ GK++DP+G +IR +LP L +P+ Y+YEPW P
Sbjct: 369 GGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIRSYLPSLVSVPQTYLYEPWKMPEA 428
Query: 342 IQTRAKCIIGRDYPAPVVSHDSASKEC 368
+Q CIIG DYP P+V H K
Sbjct: 429 LQESIACIIGEDYPHPLVDHAEQRKRA 455
>gi|383480261|ref|YP_005389155.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|383494243|ref|YP_005411919.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
gi|378928251|gb|AFC66457.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|378929970|gb|AFC68387.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
Length = 469
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 166
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE K Y ++++ F EA K+L I D+
Sbjct: 167 SQGRWLNLETPDDV-------LRTVESFKDKKY--QDVATF----DEASKQLNRFIQDQ- 212
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 213 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 263
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 264 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 323
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 324 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 382
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 383 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYP 442
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 443 QPIVDHAKQREQAIAK 458
>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
Length = 477
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 174
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 175 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 220
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 221 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 271
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 272 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 331
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 332 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 390
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 391 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYP 450
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 451 QPIVDHAKQREQAIAK 466
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 156/284 (54%), Gaps = 14/284 (4%)
Query: 79 PTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTV 138
P++++LG+ +SP GGE+ A +L+ I + +A + + SA T+
Sbjct: 182 PSLKDLGFA----TSVSPPPGGETSAQARLQGFIQNG--LARYATERDVLSA---DGTSR 232
Query: 139 LSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMK 198
LSPYL+FGCLS R Y + V + + S + +L+WRDF+ + F P +
Sbjct: 233 LSPYLRFGCLSPRRAYWA---AREAVPEGSPGMESWIAELIWRDFYRQILFHFPYVETGA 289
Query: 199 GNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDM 258
R + W N+ W + +TG+P +DA M QL GWMH+ AR VA FLT+ D+
Sbjct: 290 FRRAYDDLAWENNASWFDLWCQGKTGFPIVDAAMRQLLTTGWMHNRARMIVASFLTK-DL 348
Query: 259 FVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYI 317
+ W G F + L+D D A NNG W W + + Q Y RI++P + GKK+DP G Y+
Sbjct: 349 LIDWRWGERHFMKHLVDGDLAANNGGWQWAASTGTDAQPYFRIFNPTAQGKKFDPTGAYV 408
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
R ++P L+ +P +I+EP P +Q +C+IG DYPAP+V H
Sbjct: 409 RQYVPELRAVPDRWIHEPSRMPPDVQRAFRCVIGVDYPAPLVDH 452
>gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
Length = 477
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 174
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 175 SQDRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 220
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 221 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 271
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 272 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 331
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 332 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 390
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 391 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYP 450
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 451 QPIVDHAKQREQAIAK 466
>gi|15675407|ref|NP_269581.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SF370]
gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|410680903|ref|YP_006933305.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M1 GAS]
gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|395454290|dbj|BAM30629.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 476]
gi|409693492|gb|AFV38352.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
Length = 469
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 166
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 167 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 212
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 213 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 263
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 264 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 323
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 324 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 382
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 383 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYP 442
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 443 QPIVDHAKQREQAIAK 458
>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS8232]
gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
Length = 469
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 166
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 167 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 212
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 213 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 263
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 264 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 323
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 324 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 382
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 383 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYP 442
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 443 QPIVDHAKQREQAIAK 458
>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
Length = 477
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 174
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 175 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 220
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 221 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 271
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 272 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 331
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 332 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 390
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 391 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYP 450
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 451 QPIVDHAKQREQAIAK 466
>gi|386363038|ref|YP_006072369.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|421892494|ref|ZP_16323147.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
gi|350277447|gb|AEQ24815.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|379981746|emb|CCG26869.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
Length = 469
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 166
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 167 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 212
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 213 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 263
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 264 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 323
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 324 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 382
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 383 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYP 442
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 443 QPIVDHAKQREQAIAK 458
>gi|21910695|ref|NP_664963.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315]
gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS315]
gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
SSI-1]
Length = 469
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 166
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 167 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 212
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 213 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 263
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 264 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 323
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 324 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 382
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 383 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYP 442
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 443 QPIVDHAKQREQAIAK 458
>gi|407796462|ref|ZP_11143416.1| deoxyribodipyrimidine photo-lyase [Salimicrobium sp. MJ3]
gi|407019247|gb|EKE31965.1| deoxyribodipyrimidine photo-lyase [Salimicrobium sp. MJ3]
Length = 472
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 21/356 (5%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
G+ + + H L ++ +K+G YQ F Q P V L + D
Sbjct: 117 GVRTHTYIDHPLHGAEEVTKKDGE----LYQVFSPYFKQWQKLDKPPVVKLDT-----DK 167
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKEWVANFEKPKG 126
+++ G + Y + +P R GE A ++L + E + +++ +
Sbjct: 168 MKQHLTDRSGDFTDGEEKYRELTKAPLRKWEEVGEEAAEQRLTRFLD--EPIYYYDEDRD 225
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYT 186
PS K T+++S YL+ G +S R Y + K+ S + +L +RDF++
Sbjct: 226 IPS---KDGTSLMSRYLRTGAISPRTVYHRVQQETDGRKRQDGVE-SFIRELAFRDFYHM 281
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
V + P D + + IPW+ D+E+ W+EARTG+P+IDA M Q+ + GWMH+ AR
Sbjct: 282 VYYNHPEADDQELTEKFRDIPWNEDEEIFDRWKEARTGFPFIDAAMAQMNESGWMHNRAR 341
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVS 305
VA FLT+ D+ + W KG F+R L D + A N G W W S + Y R+++PV
Sbjct: 342 MAVASFLTK-DLLIDWRKGERYFNRKLADYEAASNIGGWQWAASTGTDAVPYFRVFNPVR 400
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+++D +G+YI+ +LP L+++P++YI+EP Q A C IG DYP P+V H
Sbjct: 401 QSERFDKHGDYIKEWLPALRNVPEKYIHEPHKMSEDEQKEAGCTIGEDYPEPMVDH 456
>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
Manfredo]
gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
str. Manfredo]
Length = 469
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 166
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + + Y ++++ F EA K+L I D+
Sbjct: 167 SQGRWLNLETPDDV-------LRTVESIKDEKY--QDVATF----DEASKQLNRFIQDQ- 212
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 213 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 263
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 264 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 323
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 324 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 382
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ K++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 383 PYFRIFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYP 442
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 443 QPIVDHAKQREQAIAK 458
>gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
Length = 480
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 187/376 (49%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 120 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 177
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 178 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 223
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 224 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 274
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 275 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 334
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 335 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAV 393
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y R+++PV+ K++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 394 PYFRVFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYP 453
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 454 QPIVDHAKQREQAIAK 469
>gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M49 591]
Length = 381
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 183/366 (50%), Gaps = 32/366 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + + Q +P+ V L
Sbjct: 38 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYR-XWQNYPKETPIKVEL 95
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 96 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 141
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 142 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 192
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 193 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 252
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 253 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 311
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DY
Sbjct: 312 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYA 371
Query: 356 APVVSH 361
P+V H
Sbjct: 372 QPIVDH 377
>gi|417856580|ref|ZP_12501639.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933535|gb|EIK41648.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 469
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 187/376 (49%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 166
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 167 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 212
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 213 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 263
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 264 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 323
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFY 295
K GWMH+ R VA FLT+ D+ W G F + LID D A N G W W S +
Sbjct: 324 KTGWMHNRLRMIVASFLTK-DLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAV 382
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y R+++PV+ K++DP G +I+ +LP L+ +P++Y++EPW P +Q CIIG DYP
Sbjct: 383 PYFRVFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYP 442
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 443 QPIVDHAKQREQAIAK 458
>gi|386715963|ref|YP_006182287.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
gi|384075520|emb|CCG47015.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
Length = 480
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 184/369 (49%), Gaps = 29/369 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+VK+Y + + ++VFS + H + ++ +K GG Y+ F Q W
Sbjct: 111 EVKEYLNDSDVQVFSYIDHHMHGAKEVTKKTGG----YYKVFTPYYKQ--WKQL------ 158
Query: 62 SSLPPVGDVGYFEISEVPTVE----ELGYKGYGQEELSPFRG----GESEALKKLRESIS 113
P V V + +S++ + E GYK Y R GE+ AL + +
Sbjct: 159 -QKPAVQKVDHERLSQLAVDKNDEFEDGYKAYKNLISKTTREFDKVGENNALDHFYDFLD 217
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
E + +EK + P+ T+ +S +L+ G +S R Y + D + +K+T +
Sbjct: 218 --EAIYEYEKERDFPAV---DGTSRMSRFLRTGAISIRTVYHLIHDQV-DYRKNTEGVET 271
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
+ +L WRDF+ + PN + + +PW+ D++L W+E RTG+P IDA M
Sbjct: 272 YISELAWRDFYNMIYHFYPNAGDEEMVEKYRGLPWNYDEDLFNQWKEGRTGFPIIDAAMR 331
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSS 292
Q+ + GWMH+ R VA FLT+ D+ + W G F LID D A N G W W S +
Sbjct: 332 QMNETGWMHNRLRMAVASFLTK-DLLMDWRAGERYFAEQLIDYDPASNIGGWQWAASTGT 390
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
Y R+++P +++DP+G +I+ ++P L D+ K+YI+EP Q +A C+IG
Sbjct: 391 DPVPYFRVFNPTRQSERFDPHGRFIKEWVPELIDVDKKYIHEPAKMSEKDQEQANCVIGE 450
Query: 353 DYPAPVVSH 361
DYP P+V H
Sbjct: 451 DYPEPMVDH 459
>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
Length = 467
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 136/234 (58%), Gaps = 3/234 (1%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
++ LSPY +FG LS R + C Y + + + + +LLWR+F+ + P
Sbjct: 224 SSQLSPYFRFGLLSVREAW-CAAARYLDEPDAAAGARAWLDELLWREFYQHLLAAWPESA 282
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
RM + + W ++ LA W+E RTG+P +DA M QL GWM + AR VA FL++
Sbjct: 283 RMSMQPEFRDVAWPGSNDALARWQEGRTGFPVVDAAMRQLVSEGWMSNRARMIVASFLSK 342
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNG 314
+ V W +G F R L+D D A N G W W + + + Y RI++PV G+++DPNG
Sbjct: 343 -LLLVDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAAPYFRIFNPVLQGEQHDPNG 401
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+++R +LP L ++P+EY++ PW P+ +Q RA C IG DYPAP+V ++SA
Sbjct: 402 SWVRTWLPELANVPREYLFAPWRMPIEVQLRAGCRIGHDYPAPIVEYESARARA 455
>gi|395763919|ref|ZP_10444588.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium lividum PAMC
25724]
Length = 487
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 150/296 (50%), Gaps = 17/296 (5%)
Query: 78 VPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
+P++ ELG++ EL+ G G SE + ++ + +F KG
Sbjct: 191 LPSLGELGFEASNLAELAIPTGMSGASELFEDFLARVARYDVARDFPALKG--------- 241
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
+ LS +L+FG +S RY + + D+ PV L +L+WRDF+ + + P+
Sbjct: 242 PSYLSMHLRFGTVSLRYLVRSVVDLMDRGSGGDGAPVWL-AELIWRDFYAMILYQNPHVA 300
Query: 196 RMKGNRICKQIPWSND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
I W D AAW E RTGYP +DA M QL + G+MH+ R ACF
Sbjct: 301 GAAFKPAYDAIAWETGLEADAAFAAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTACF 360
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + D+ + W +G F L D D A NNG W W S S Q Y RI++PV+ +K+D
Sbjct: 361 LIK-DLGIDWRRGEAYFALHLNDFDLASNNGGWQWASSSGCDSQPYFRIFNPVTQSEKFD 419
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE 367
NG +IR +LP LK + + I+ PW P + + ++GRDYP P+V HD A KE
Sbjct: 420 ANGRFIRRYLPQLKALGDKEIHAPWLVPRMLLEQKNIVLGRDYPEPLVQHDEARKE 475
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 131/243 (53%), Gaps = 12/243 (4%)
Query: 132 LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGT 191
L T+ LSPYL GCLS+R Q + V++ + V QL WRDF+ V
Sbjct: 234 LAGGTSALSPYLHHGCLSARECEQ------RAVRRGGEGAEAFVRQLAWRDFYAHVLLHH 287
Query: 192 PNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
P R + + + W DDELLAAW++ RTG+P +DA M QLR GWMH+ AR
Sbjct: 288 PEDVRREHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHNRARLVTGS 347
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKK 309
FLT+ D+ + W G F R L+D D A NNGNW W++ + RI +P ++
Sbjct: 348 FLTK-DLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILNPALQQRR 406
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECK 369
+DP+G Y+R ++P L +P + EPW Q A C IG DYPAP+V H + E +
Sbjct: 407 HDPDGAYVRRWVPELARVPDALLTEPWLMSEQQQRAAGCRIGADYPAPIVDH---AHERR 463
Query: 370 RKL 372
R L
Sbjct: 464 RAL 466
>gi|434400657|ref|YP_007134661.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
gi|428271754|gb|AFZ37695.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
Length = 475
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 187/385 (48%), Gaps = 35/385 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KVK + GIEV S L P +I+ K+ +P Y F K W ++
Sbjct: 112 KVKAALTEKGIEVSSLWDQLLHAPGEILTKSSQQPYTVYTPFWKN-----WIEQKKQNAI 166
Query: 62 SSLPPVGDVGYFEISE--------VPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
+ L ++ E ++ +PT ++LGY L+P GE+ A ++L E S
Sbjct: 167 TKLNQFENLTDEEFNQAQQSGVINLPTAKDLGYIWDNPLILAP---GETAAKERLVEFCS 223
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP-- 171
+ +++ + P+ T+ LS LKFG + R ++ T+ ++N + +
Sbjct: 224 RA--INEYDEQRNYPAV---DGTSQLSAALKFGAIGIRTVWEASTEAHENCRSDETRDNI 278
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
S +L WR+F+ + P ++ R K PW N+++ AW E +TGYP +DA
Sbjct: 279 RSWQQELAWREFYQHCMYFFPELEQGAYRREFKDFPWENNEDYFQAWCEGKTGYPIVDAA 338
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QL + GWMH+ R VA FLT+ D+ ++W+ G F + L D D + NNG W W + S
Sbjct: 339 MRQLNEIGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQKLFDGDLSANNGGWQWSASS 397
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+ RI++P S +KYDP G YIR +LP L + EY+ T ++ R +C
Sbjct: 398 GMDPKPLRIFNPASQAQKYDPEGEYIRQWLPELSSVDNEYLV---TGKISKSERERC--- 451
Query: 352 RDYPAPVVSHDSASKECKRKLGEAY 376
DYP P+V H K +RK E Y
Sbjct: 452 -DYPQPIVDH----KIQQRKFKELY 471
>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
Length = 473
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 176/375 (46%), Gaps = 28/375 (7%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV- 59
+ +K+ G+ V S H L P ++ +++G Y+ F + W P PV
Sbjct: 111 LYIKELVEKKGVTVHSFEEHHLHQPTEVTKEDGT----YYKKFTPYYKK--WIQLPKPVY 164
Query: 60 -----SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
D +F+ E L + + GE A K+L+ +
Sbjct: 165 QKQALDFEKAAHFNDAPHFKAGTALLAEVLNNRKTDFSTIV----GEDYAHKQLQAFVQK 220
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ +A +EK + PS T+ LSP+L FG +S R + + + K T
Sbjct: 221 R--LAAYEKDRDLPSI---KGTSRLSPFLSFGQISIRKVWAACQGMPPSTGKAT-----F 270
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +L WRDF++ + F P + + + W D+E W+ +TGYP IDA M Q
Sbjct: 271 LKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQ 330
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSF 293
L + GWMH+ R VA FLT+ D+ + W +G F R LID D A N G W W S +
Sbjct: 331 LNQTGWMHNRLRMIVASFLTK-DLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTD 389
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y RI++P++ GKK+D G YI+ F+P L +P ++I+EP+ Q K ++G D
Sbjct: 390 AVPYFRIFNPITQGKKFDKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTD 449
Query: 354 YPAPVVSHDSASKEC 368
YP P+V H+ A K
Sbjct: 450 YPLPIVDHNEARKRA 464
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 136/242 (56%), Gaps = 13/242 (5%)
Query: 134 PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQLLWRDFFYTVAFGTP 192
P T+ LSPYL+FG ++ R QCL + H P + + +L WRDF+ V F P
Sbjct: 225 PGTSRLSPYLRFGMIAVR---QCLA----VAQAHPGPGADTWIAELAWRDFYIQVLFHHP 277
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ R + W ND +L AAW TGYP +DA M QL++ GWMH+ AR VA F
Sbjct: 278 HVLRGAFKPQYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVASF 337
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
LT+ D+ + W G F ++L+D D A NNG W W + + Q Y RI++P G+K+D
Sbjct: 338 LTK-DLLIDWRWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFD 396
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRK 371
P+G+YIR +LP L +P I+ P + Q RA IG DYPAP+V H ++ +R
Sbjct: 397 PHGDYIRRYLPELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLVDH---AQRRERA 453
Query: 372 LG 373
LG
Sbjct: 454 LG 455
>gi|46446306|ref|YP_007671.1| photolyase [Candidatus Protochlamydia amoebophila UWE25]
gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
Length = 471
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 185/371 (49%), Gaps = 22/371 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP---LP 58
K+K GI+ S + LF P I K G KP +Q F Q L + P LP
Sbjct: 112 KIKTELQKQGIKAHSFNGNLLFEPWTIANKQG-KP---FQVFTPFWNQCLKLNDPEVPLP 167
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
V S VG + I + + ++ + +E SP LKK + D +++
Sbjct: 168 VPHSLKKFVGQLQTESIDSLNLLPKIKWDKGLKEVWSPGAKSAKALLKKGLTGVID-QYL 226
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
+ P D T++LSPYL FG +S R +Q + + + + Q+
Sbjct: 227 DIRDLPDHD-------GTSLLSPYLHFGEISPRMIWQAVKE-----NSTSKGAEGYLRQI 274
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F + + + P + W ND + L AW++ +TGYP IDA M QL K
Sbjct: 275 GWREFAHHLLYHFPETPQKPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKI 334
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQY 297
GWMH+ R V FL + D+ +HW +G F L+D+D A N W W++ C + Y
Sbjct: 335 GWMHNRVRLIVGSFLVK-DLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPY 393
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
RI++P++ G+K+DP GNY++ ++P L ++PKE++++PW AP I ++ +G +YP P
Sbjct: 394 FRIFNPITQGEKFDPEGNYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKP 453
Query: 358 VVSHDSASKEC 368
+V+H A +E
Sbjct: 454 IVNHAKAREEA 464
>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
Length = 469
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 179/375 (47%), Gaps = 28/375 (7%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV- 59
+ + + GI V S H L P ++ +++G Y+ F + W P PV
Sbjct: 107 LYITELVEQKGITVHSFEDHHLHQPTEVTKEDGT----YYKKFTPYYKK--WIQLPKPVY 160
Query: 60 -----SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
D +F+ + E + + + GE A K+L+ +
Sbjct: 161 QKHALDFEKAAHFNDAPHFKAGTMLLAELIKNRKTDFSTIV----GEDYAHKQLQAFVQK 216
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ +A +EK + PS T+ LSP+L FG +S R + ++ + K T
Sbjct: 217 R--LAAYEKDRDIPSI---KGTSRLSPFLSFGQISIRKVWAACQEMPSSTGKAT-----F 266
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +L WRDF++ + F P + + + W D+E L W+ +TGYP IDA M Q
Sbjct: 267 LKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQ 326
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSF 293
L + GWMH+ R VA FLT+ D+ + W +G F R LID D A N G W W S +
Sbjct: 327 LNQTGWMHNRLRMIVASFLTK-DLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTD 385
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y RI++P++ GKK+D +G +I+ F+P L +P ++++EP+ Q + ++G D
Sbjct: 386 AVPYFRIFNPITQGKKFDKDGTFIKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTD 445
Query: 354 YPAPVVSHDSASKEC 368
YP P+V H+ A K
Sbjct: 446 YPLPIVDHNEARKRA 460
>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
Length = 486
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 185/380 (48%), Gaps = 31/380 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW--ASSPLPVS 60
VK + G++ S L P + K KP + Y S++K + + A +P
Sbjct: 112 VKHWLREQGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAP 171
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE--WV 118
+ P D+ I P++ +LG++ ++ P + GE+ A ++L + ++ V
Sbjct: 172 SKFVAPPSDLASLPI---PSLADLGFE---LQQTIP-QVGETIAQQRLAQFFDRRQKLSV 224
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP-------- 170
+ K + P+ + T+ LS L+ G +S R QCL Q V T P
Sbjct: 225 LKYTKAREVPA---EAGTSQLSVDLRMGTISIR---QCLK---QAVDLLTEPLNAEQRQG 275
Query: 171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
+ + +L WRD++ + + P + QI W ND AW++ +TGYP +DA
Sbjct: 276 VDTWLKELAWRDYYTQLIYHNPYMLNGSLDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDA 335
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
QL + WMH+ R A FL + D+ + W G F + L D D NNG W W +
Sbjct: 336 GQRQLNQMAWMHNRVRMISASFLIK-DLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAG 394
Query: 291 SS--FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
SS Y RI++P++ KK+DP+G YIR F+P L ++P YI+EPWT P +Q C
Sbjct: 395 SSGPSAQPYFRIFNPIAQSKKHDPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGC 454
Query: 349 IIGRDYPAPVVSHDSASKEC 368
+IGRDYPAP+V H A +
Sbjct: 455 VIGRDYPAPLVEHSFARERA 474
>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
Length = 473
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 183/372 (49%), Gaps = 22/372 (5%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGG---KPPLTYQSFLKLAGQPLWASSPL 57
+ +K+ GI V S H L P ++ +++G K Y+ +++L +P++ L
Sbjct: 111 LYIKELVEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLP-KPVYQKQAL 169
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
S D +F+ + L + + GE A K+L+ + +
Sbjct: 170 DFEKSV--HFDDAPHFKAGTALLAKLLENRKTDFSTIV----GEDYAHKQLQAFVQKR-- 221
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
+A +EK + PS T+ LSP+L FG +S R + + + K T + +
Sbjct: 222 LAAYEKDRDIPSI---KGTSRLSPFLSFGQISIRKVWAACQGMPSSTGKAT-----FLKE 273
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
L WRDF++ + F P + + + W ++E L W+ +TGYP IDA M QL +
Sbjct: 274 LAWRDFYHMIYFSHPEQKNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQ 333
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQ 296
GWMH+ R VA FLT+ D+ + W +G F R LID D A N G W W S +
Sbjct: 334 TGWMHNRLRMIVASFLTK-DLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVP 392
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y RI++P++ GKK+D +G +I+ F+P L +P ++I+EP+ Q K ++G DYP
Sbjct: 393 YFRIFNPITQGKKFDKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPL 452
Query: 357 PVVSHDSASKEC 368
P+V H+ A K
Sbjct: 453 PIVDHNEARKRA 464
>gi|420263503|ref|ZP_14766140.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
gi|394769460|gb|EJF49316.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
Length = 473
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 176/375 (46%), Gaps = 28/375 (7%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV- 59
+ +K+ G+ V S H L P ++ +++G Y+ F + W P PV
Sbjct: 111 LYIKELVEKKGVTVHSFEEHHLHQPTEVTKEDGT----YYKKFTPYYKK--WIQLPKPVY 164
Query: 60 -----SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
D +F+ + L + + GE A K+L+ +
Sbjct: 165 QKQALDFEKAAHFNDAPHFKAGTALLAKLLKNRKTDFSTIV----GEDYAHKQLQAFVQK 220
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ +A +EK + PS T+ LSP+L FG LS R + + + K T
Sbjct: 221 R--LAAYEKDRDLPSI---KGTSRLSPFLSFGQLSIRKVWAACQGMPPSTGKAT-----F 270
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +L WRDF++ + F P + + + W D+E W+ +TGYP IDA M Q
Sbjct: 271 LKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQ 330
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSF 293
L + GWMH+ R VA FLT+ D+ + W +G F R LID D A N G W W S +
Sbjct: 331 LNQTGWMHNRLRMIVASFLTK-DLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTD 389
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y RI++P++ GKK+D G +I+ F+P L +P ++I+EP+ Q K ++G D
Sbjct: 390 AVPYFRIFNPITQGKKFDKEGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTD 449
Query: 354 YPAPVVSHDSASKEC 368
YP P+V H+ A K
Sbjct: 450 YPLPIVDHNEARKRA 464
>gi|423458833|ref|ZP_17435630.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
gi|401145461|gb|EJQ52985.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
Length = 476
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 186/373 (49%), Gaps = 28/373 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K+K GI SH L P I +K+ + Y+ F P P+S
Sbjct: 107 KMKIMLEEKGIICKEFNSHLLLEPWIIKKKDNTE----YKVFTPFYNAFQKQEIPKPISK 162
Query: 62 -------SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
SSLP +SE+ + + + + + P G +A KK S
Sbjct: 163 VQRIKGGSSLP-----ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKACKKFFSSK-- 215
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHTSPPV 172
+A++ + + P+ + A ++L+PYL FG +S R+ Y L + +
Sbjct: 216 ---LASYSEGRDFPN---QNAHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVN 269
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP+IDA M
Sbjct: 270 SFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGM 329
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
+L + G+MH+ AR VA FL + + + W++G F L+D+D A N W W++ S
Sbjct: 330 RELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFLDTLLDADIANNTMGWQWVAGSG 388
Query: 293 FFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
Y RI++P++ G+K+D NG YIR ++P LKDMP +YI++PW AP I +A +G
Sbjct: 389 ADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLG 448
Query: 352 RDYPAPVVSHDSA 364
YP PVV H +A
Sbjct: 449 HTYPLPVVDHKAA 461
>gi|746118|prf||2017201A DNA photolyase
Length = 486
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 150/274 (54%), Gaps = 14/274 (5%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A+K+L+ + K+ ++ ++ + PS T+ LSPY+K G +SSR Y +
Sbjct: 217 GEEHAIKRLQ--MFTKKRLSGYKANRDFPSI---TGTSRLSPYIKTGAVSSRSIYYHIL- 270
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
N + + + + +L WRDF+ V F P+ + +++ WS+D + L +W+
Sbjct: 271 ---NAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWK 327
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TG+P +DA M QL GWMH+ R A FLT+ D+ + W G F+R+LID D +
Sbjct: 328 RGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDPS 386
Query: 280 INNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++PV+ K++D NG YIR ++P L +P YI+EPW
Sbjct: 387 SNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKM 446
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
Q + KC + DYP P+V H SK+ K+ L
Sbjct: 447 SEEEQVKYKCRLDEDYPLPIVDH---SKQRKKAL 477
>gi|398817002|ref|ZP_10575637.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
gi|398031514|gb|EJL24900.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
Length = 484
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 181/375 (48%), Gaps = 16/375 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + S+ G+ V + L P +I+ K + P + + Q L P P +
Sbjct: 111 VSEVLSSQGVVVHTCKDLILHEPGEIMTKQ--RTPYAVFTPYRRVWQTLPKDRPFPQP-T 167
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+ VPTVE G K E + GE A K+L++ ++ + ++
Sbjct: 168 RWNLFDRLKELASEPVPTVEAFGRKRPIGTEWEMEQFGERAAQKRLQQFLNGD--IYTYK 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQLLWR 181
+ + P AT+ LS L G LS R Y + +V + + + + +L+WR
Sbjct: 226 EKRDMPGVN---ATSRLSFALNTGTLSIRTVYHSVQEVLARARGEQVTSIEAFLTELIWR 282
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+F+ V + P+ + + W N +L W TGYP +DA M QL + GWM
Sbjct: 283 EFYQQVLYFHPHTTDHAYLPQFETVAWENRKDLFTRWCHGETGYPIVDAAMKQLNETGWM 342
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRI 300
H+ R A FLT+ D+ V W G F + L+D D A N G W W + + Q Y RI
Sbjct: 343 HNRLRMITASFLTK-DLLVDWRWGMAYFAQQLVDFDEAANIGGWQWSASTGTDAQPYFRI 401
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++PV+ G+K+DP+G +++ +LPVL+++P +YI++PW P IQ +A C IG DYP P V
Sbjct: 402 FNPVTQGEKFDPDGAFVKKYLPVLREVPLQYIHKPWDMPEQIQEQAGCKIGFDYPIPCVD 461
Query: 361 HDSASKECKRKLGEA 375
H +RKL A
Sbjct: 462 HAQ-----RRKLAMA 471
>gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4]
gi|298286845|sp|Q04449.2|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus
pseudofirmus OF4]
Length = 479
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 150/275 (54%), Gaps = 14/275 (5%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A+K+L+ + K+ ++ ++ + PS T+ LSPY+K G +SSR Y +
Sbjct: 210 GEEHAIKRLQ--MFTKKRLSGYKANRDFPSI---TGTSRLSPYIKTGAVSSRSIYYHIL- 263
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
N + + + + +L WRDF+ V F P+ + +++ WS+D + L +W+
Sbjct: 264 ---NAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWK 320
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TG+P +DA M QL GWMH+ R A FLT+ D+ + W G F+R+LID D +
Sbjct: 321 RGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDPS 379
Query: 280 INNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++PV+ K++D NG YIR ++P L +P YI+EPW
Sbjct: 380 SNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKM 439
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373
Q + KC + DYP P+V H SK+ K+ L
Sbjct: 440 SEEEQVKYKCRLDEDYPLPIVDH---SKQRKKALS 471
>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 476
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL 108
Q + + LPVSLS +SE+ + + + + + P G A K
Sbjct: 164 QSIKGGNSLPVSLS------------VSELHLLPTIPWTSHMESIWEPTEEG---AYKTW 208
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+E S K +A++ + + P+ + A ++L+PYL FG +S + Y L + K T
Sbjct: 209 KEFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL------INKST 257
Query: 169 SPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWRE 220
SL + QL+WR+F Y + + P N+ + PW+N++ELL W++
Sbjct: 258 ESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPWNNEEELLRVWQK 317
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A
Sbjct: 318 GDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIAN 376
Query: 281 NNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +YI++PW AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIREWVPELKDMPNKYIHKPWEAP 436
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
I +A +G YP PVV H +A +
Sbjct: 437 EHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
Length = 476
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL 108
Q + + LPVSLS +SE+ + + + + + P G A K
Sbjct: 164 QSIKGGNSLPVSLS------------VSELHLLPTIPWTSHMESIWEPTEEG---AYKTW 208
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+E S K +A++ + + P+ + A ++L+PYL FG +S + Y L + K T
Sbjct: 209 KEFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL------INKST 257
Query: 169 SPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWRE 220
SL + QL+WR+F Y + + P N+ + PW+N++ELL W++
Sbjct: 258 ESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPWNNEEELLRVWQK 317
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A
Sbjct: 318 GDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIAN 376
Query: 281 NNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +YI++PW AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIREWVPELKDMPNKYIHKPWEAP 436
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
I +A +G YP PVV H +A +
Sbjct: 437 EHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 476
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL 108
Q + + LPVSLS +SE+ + + + + + P G A K
Sbjct: 164 QSIKGGNSLPVSLS------------VSELHLLPTIPWTSHMESIWEPTEEG---AYKTW 208
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+E S K +A++ + + P+ + A ++L+PYL FG +S + Y L + K T
Sbjct: 209 KEFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL------INKST 257
Query: 169 SPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWRE 220
SL + QL+WR+F Y + + P N+ + PW+N++ELL W++
Sbjct: 258 ESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPWNNEEELLRVWQK 317
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A
Sbjct: 318 GDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIAN 376
Query: 281 NNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +YI++PW AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIREWVPELKDMPNKYIHKPWEAP 436
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
I +A +G YP PVV H +A +
Sbjct: 437 EHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
A2012]
gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CDC 684]
gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A1055]
gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Kruger B]
gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Vollum]
gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Australia 94]
gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase [Bacillus anthracis str. Ames]
gi|386736907|ref|YP_006210088.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|421510721|ref|ZP_15957609.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|421636758|ref|ZP_16077356.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
gi|384386759|gb|AFH84420.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|401819244|gb|EJT18426.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|403395554|gb|EJY92792.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
Length = 476
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL 108
Q + + LPVSLS +SE+ + + + + + P G A K
Sbjct: 164 QSIKGGNSLPVSLS------------VSELHLLPTIPWTSHMESIWEPTEEG---AYKTW 208
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+E S K +A++ + + P+ + A ++L+PYL FG +S + Y L + K T
Sbjct: 209 KEFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL------INKST 257
Query: 169 SPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWRE 220
SL + QL+WR+F Y + + P N+ + PW+N++ELL W++
Sbjct: 258 ESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPWNNEEELLRVWQK 317
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A
Sbjct: 318 GDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIAN 376
Query: 281 NNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +YI++PW AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAP 436
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
I +A +G YP PVV H +A +
Sbjct: 437 EHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|348503387|ref|XP_003439246.1| PREDICTED: cryptochrome DASH-like [Oreochromis niloticus]
Length = 521
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 193/381 (50%), Gaps = 23/381 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSP 56
+VKD + ++V + TL++ D+ + + P Y F K +P++++
Sbjct: 121 RVKDVCAQMKVKVHTCWGSTLYHRDDLPFPHMSRLPDVYTQFRKAVESEGRVRPVFST-- 178
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISD 114
P L+ LPP E +PT E+L + S F GGES+AL +L+ D
Sbjct: 179 -PEKLNPLPPG-----LEEGAIPTAEDLQQTEPVTDPRSAFPCGGGESQALARLKHYFWD 232
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ VA +++ + +T SP+L GC+S RY Y + Y+ + +
Sbjct: 233 TDAVATYKETRNGLIGV--DYSTKFSPWLAMGCISPRYIYHQIKQ-YEKERTANQSTYWV 289
Query: 175 VGQLLWRDFF--YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
+ +LLWRD+F +V +G F ++KG + K +PW D +L AW+E RTG P++DA M
Sbjct: 290 IFELLWRDYFRFVSVKYGNRIF-QVKGLQ-DKSVPWKKDMKLFDAWKEGRTGVPFVDANM 347
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
+L G+M + R VA FLT+ D+ + W G + F+ LLID D N GNWL+ +
Sbjct: 348 RELAATGFMSNRGRQNVASFLTK-DLGLDWRMGAEWFESLLIDHDVCSNYGNWLYSAGIG 406
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
+ NR ++ + G YD NG+Y+R ++P L+++ ++ PW + A +G
Sbjct: 407 NDPRENRKFNMIKQGLDYDNNGDYVRGWVPELQNIRGGDVHTPWALSTAVLAHAHVTLGD 466
Query: 353 DYPAPVVSHDSASKECKRKLG 373
YPAP+V+ S+ +K G
Sbjct: 467 TYPAPIVTAPEWSRHVNKKAG 487
>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
Length = 476
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL 108
Q + + LPVSLS +SE+ + + + + + P G A K
Sbjct: 164 QSIKGGNSLPVSLS------------VSELHLLPTIPWTSHMESIWEPTEEG---AYKTW 208
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+E S K +A++ + + P+ + A ++L+PYL FG +S + Y L + K T
Sbjct: 209 KEFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL------INKST 257
Query: 169 SPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWRE 220
SL + QL+WR+F Y + + P N+ + PW+N++ELL W++
Sbjct: 258 ESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPWNNEEELLRVWQK 317
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A
Sbjct: 318 GDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIAN 376
Query: 281 NNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +YI++PW AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAP 436
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
I +A +G YP PVV H +A +
Sbjct: 437 EHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. 'Ames
Ancestor']
gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. 'Ames Ancestor']
Length = 469
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 36/329 (10%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL 108
Q + + LPVSLS +SE+ + + + + + P G A K
Sbjct: 157 QSIKGGNSLPVSLS------------VSELHLLPTIPWTSHMESIWEPTEEG---AYKTW 201
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+E S K +A++ + + P+ + A ++L+PYL FG +S + Y L + K T
Sbjct: 202 KEFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL------INKST 250
Query: 169 SPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWRE 220
SL + QL+WR+F Y + + P N+ + PW+N++ELL W++
Sbjct: 251 ESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPWNNEEELLRVWQK 310
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A
Sbjct: 311 GDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIAN 369
Query: 281 NNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +YI++PW AP
Sbjct: 370 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAP 429
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
I +A +G YP PVV H +A +
Sbjct: 430 EHILQKANIQLGHTYPLPVVDHKAARERA 458
>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
Length = 513
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 150/304 (49%), Gaps = 17/304 (5%)
Query: 77 EVPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKP 134
++PT+ +LG+ ++ G G + I D +F +G PS
Sbjct: 213 QLPTLADLGFTATNLAGIAMPTGSDGAHALFDEFLSRIGDYGRRRDFPAVRG-PS----- 266
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
LS +L+FG +S R + D + + +L+WRDF++ + P
Sbjct: 267 ---YLSVHLRFGTISIRTLARAAHDTMLRGGAASEGATVWLSELIWRDFYFMILHHHPRV 323
Query: 195 DRMKGNRI----CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
K + I + D AAW +ARTGYP IDA M+Q+R+ G+MH+ R A
Sbjct: 324 AEGKSFHAEYDGLRWIAPATGDRYFAAWCDARTGYPLIDAAMLQIRQSGYMHNRLRMVTA 383
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKK 309
FL + D+ V W +G F L D D A NNG W W + + Q Y RI++PV+ +K
Sbjct: 384 SFLVK-DLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYFRIFNPVTQSEK 442
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECK 369
+DP G +IR +LP+L +P YI+ PWTAP + A +G+DYP P+V HD A KE
Sbjct: 443 FDPQGQFIRRYLPMLAALPDRYIHAPWTAPNEVLRAAGVTLGKDYPRPIVQHDVARKETL 502
Query: 370 RKLG 373
+ G
Sbjct: 503 ERYG 506
>gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus
(fragment)
gi|142783|gb|AAA22361.1| DNA photolyase, partial [Bacillus firmus]
Length = 339
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 146/270 (54%), Gaps = 11/270 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A+K+L+ + K+ ++ ++ + PS T+ LSPY+K G +SSR Y +
Sbjct: 70 GEEHAIKRLQ--MFTKKRLSGYKANRDFPSI---TGTSRLSPYIKTGAVSSRSIYYHIL- 123
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
N + + + + +L WRDF+ V F P+ + +++ WS+D + L +W+
Sbjct: 124 ---NAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWK 180
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TG+P +DA M QL GWMH+ R A FLT+ D+ + W G F+R+LID D +
Sbjct: 181 RGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDPS 239
Query: 280 INNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++PV+ K++D NG YIR ++P L +P YI+EPW
Sbjct: 240 SNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKM 299
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
Q + KC + DYP P+V H K+
Sbjct: 300 SEEEQVKYKCRLDEDYPLPIVDHSKQRKKA 329
>gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
Length = 474
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 138/270 (51%), Gaps = 10/270 (3%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A ++L + ++D+ + ++ + + P+ T+ LSPYLK G LS Y
Sbjct: 204 GEDHAHERLEQFVTDR--LTHYGESRDFPAV---AGTSRLSPYLKTGVLSVAQVYHA--- 255
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
Y +K V+ + +L WRDF+ + + N + + + W+ DDELL W+
Sbjct: 256 AYPLFEKGDDAAVTFIKELAWRDFYTMIHYHFENLRNQEFQEKYRTLSWNEDDELLEYWK 315
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
+ +TG+P IDA M QL GWMH+ R A FLT+ D + W +G F LID D A
Sbjct: 316 QGQTGFPLIDAAMRQLNTTGWMHNRLRMATASFLTK-DYRIDWREGERYFAEKLIDYDEA 374
Query: 280 INNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y R+++PV K++DP G +IR ++P LKD+P I+EP
Sbjct: 375 SNTGGWQWAASVGTDAVPYFRVFNPVRQSKRFDPEGTFIRQYVPELKDVPASSIHEPAKL 434
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
Q + IG DYP P V H A K
Sbjct: 435 SEAKQKEYRVRIGTDYPLPTVDHSEARKAA 464
>gi|407705549|ref|YP_006829134.1| hypothetical protein MC28_2313 [Bacillus thuringiensis MC28]
gi|407383234|gb|AFU13735.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis MC28]
Length = 476
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 157/273 (57%), Gaps = 13/273 (4%)
Query: 101 ESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160
E A K ++ S K +A++ + + P+ + A ++L+PYL FG +S R Y L +
Sbjct: 201 EEGAYKTCKKFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVRLMYHYLIN- 254
Query: 161 YQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLA 216
++ ++ S S + QL+WR+F Y + + P N+ + PW+N+DELL
Sbjct: 255 -KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNNEDELLT 313
Query: 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS 276
W++ TGYP+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDA 372
Query: 277 DWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
D A N W W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++P
Sbjct: 373 DIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKP 432
Query: 336 WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
W AP I +A +G YP PVV H +A +
Sbjct: 433 WEAPEHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 185/383 (48%), Gaps = 32/383 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV+ GI V + L P DI+ ++G KP Y F K W+ P
Sbjct: 112 KVEQELLKQGIAVTNYWDQLLHPPEDILTQSG-KPYTVYTPFWKN-----WSQKPKLEVA 165
Query: 62 SSLPPVGDVGYFEIS--------EVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
L + + EI +PT ++LGY G+ L+P GE+ A ++L E S
Sbjct: 166 EKLDRIQGLTAEEIKIAQETGVVSLPTGKDLGYYWDGELILTP---GETAAREQL-EEFS 221
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV--KKHTSPP 171
++ +A +++ + P+ T++LSP L+FG + R +Q + +N ++ +
Sbjct: 222 ERA-IAQYQEQRNFPAV---EGTSLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANI 277
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
+ +L WR+F+ + P + K PW N+ E AW E +TGYP +DA
Sbjct: 278 ETWQKELAWREFYQHALYHFPQLTVEPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAA 337
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QL + GWMH+ R VA FLT+ D+ ++W+ G F + L D D A NNG W W +
Sbjct: 338 MRQLNETGWMHNRCRMIVASFLTK-DLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASC 396
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+ RI++P S KK+DP G YIR +LP L + EY+ + R +C
Sbjct: 397 GMDPKPLRIFNPASQAKKFDPEGEYIRQWLPELSSIDTEYLVR---GKIPDDERERC--- 450
Query: 352 RDYPAPVVSHDSASKECKRKLGE 374
DYP P+V H+ +E KR+ E
Sbjct: 451 -DYPQPIVDHNLRQREFKRRYKE 472
>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 476
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 170/325 (52%), Gaps = 36/325 (11%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKL 108
Q + + LPVSLS +SE+ + + + + + P G + KK
Sbjct: 164 QSIKGGNSLPVSLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKF 211
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
S +A++ + + P+ + A ++L+PYL FG +S + Y L + K T
Sbjct: 212 FSSK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL------INKST 257
Query: 169 SPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWRE 220
SL + QL+WR+F Y + + P N+ + PW+N++ELL W++
Sbjct: 258 ESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPWNNEEELLRVWQK 317
Query: 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAI 280
TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A
Sbjct: 318 GETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIK-HLLIPWQEGAKWFMDTLLDADIAN 376
Query: 281 NNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAP 339
N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +YI++PW AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAP 436
Query: 340 LTIQTRAKCIIGRDYPAPVVSHDSA 364
I +A +G YP PVV H +A
Sbjct: 437 EHILQKANIQLGHTYPLPVVDHKAA 461
>gi|209559671|ref|YP_002286143.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131]
gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
NZ131]
Length = 469
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 183/376 (48%), Gaps = 32/376 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K + GI V + H L +II ++G +P + + ++ Q +P+ V L
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSG-QPYKVFTPYYRI-WQNYPKETPIKVEL 166
Query: 62 S-----SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
S +L DV + TVE + Y ++++ F EA K+L I D+
Sbjct: 167 SQGRWLNLETPDDV-------LRTVESFKDEKY--QDVATF----DEASKQLNRFIQDQ- 212
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+A + + P+ + T+ LSP+L+ G + R Y + ++ + T +
Sbjct: 213 -LAAYHANRDFPA---QLGTSRLSPFLRIGAIGIRTVYHAVRQAPNSLGQAT-----FLK 263
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WRDF+ V P+ + QI W N+ + W+E +TGYP +DA M+QL+
Sbjct: 264 ELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQ 323
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFY 295
K GWMH+ R VA FLT+ D+ G F + LID D A N G W W S +
Sbjct: 324 KTGWMHNRLRMIVASFLTK-DLLCDGRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAV 382
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ GK++DP G +I+ +LP L+ +P+ Y+ EP P +Q CIIG DY
Sbjct: 383 PYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPENYLLEPGKMPKNLQESVSCIIGTDYA 442
Query: 356 APVVSHDSASKECKRK 371
P+V H ++ K
Sbjct: 443 QPIVDHAKQREQAIAK 458
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 192/366 (52%), Gaps = 40/366 (10%)
Query: 19 SHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL-------WASSPLPVSLSSLPPV 67
SH L P I +K+ + + Y +F K + +P+ W SS LP SLS
Sbjct: 124 SHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSS-LPESLS----- 177
Query: 68 GDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
++E+ + + + + + P G + KK S +A++ + +
Sbjct: 178 -------VTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSK-----LASYSEGRDF 225
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDF 183
P+ + A ++L+PYL FG +S R+ Y L + ++ ++ S S + QL+WR+F
Sbjct: 226 PN---QNAHSMLAPYLSFGQISVRWMYHYLIN--KSTERQCSLFEKQVNSFIRQLIWREF 280
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
Y + + P N+ + PW+N++ELL W++ TGYP+IDA M +L + G+MH+
Sbjct: 281 SYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHN 340
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYS 302
AR VA FL + + + W++G F L+D+D A N W W++ S Y RI++
Sbjct: 341 RARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFN 399
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
P++ G+K+D +G YIR ++P LKDMP +YI++PW AP I +A +G YP PVV H
Sbjct: 400 PITQGEKFDKDGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHK 459
Query: 363 SASKEC 368
+A +
Sbjct: 460 AARERA 465
>gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides]
Length = 264
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 151/267 (56%), Gaps = 19/267 (7%)
Query: 38 LTYQSFLKLAG------QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQ 91
LTYQ FL +P+ V SLP + ++P E+LG
Sbjct: 1 LTYQMFLHTVATIGDPPRPVGDIDFTGVKFGSLPDSFYQEFTVFDKIPKPEDLGVF-LEN 59
Query: 92 EELSPFR--GGESEALKKLRESISDKEWV---ANFEKPKGDPSAYLKPATTVLSPYLKFG 146
E++ R GGE+ ALK++++ ++ K ++ G+P +P + LSP L+FG
Sbjct: 60 EDVRMIRWVGGETTALKQMQQRLAVKYETFLRGSYLPTHGNPDLLGRPIS--LSPALRFG 117
Query: 147 CLSSRYFYQCLTDVYQNVKK----HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRI 202
CLS R F + D+++ V + S + GQL+WR++FYT++ PN+ +M GN I
Sbjct: 118 CLSVRSFCWSVQDLFREVHQGRLATQSASHFITGQLIWREYFYTMSVNNPNYGQMSGNPI 177
Query: 203 CKQIPWSN-DDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVH 261
C IPW N + + L W E RTG+P++DA M QLR GW+HH+AR+ VA FLTRG +++
Sbjct: 178 CLDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHVARNTVAFFLTRGTLWLS 237
Query: 262 WEKGRDVFDRLLIDSDWAINNGNWLWL 288
WE G + F + L+D+DW++ GNW+W+
Sbjct: 238 WEHGLNHFLKYLLDADWSVCAGNWMWV 264
>gi|423581405|ref|ZP_17557516.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
gi|401216170|gb|EJR22885.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
Length = 476
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 172/322 (53%), Gaps = 29/322 (9%)
Query: 52 WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
W SS LP SLS +SE+ + + + + + P G + KK S
Sbjct: 168 WGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSS 214
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS-- 169
+A + + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 215 K-----LAFYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSLF 264
Query: 170 --PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
+S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP+
Sbjct: 265 EKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPF 324
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W W
Sbjct: 325 IDAGMRELWQTGFMHNRARMAVASFLVK-HLLISWQEGAKWFMDTLLDADIANNTMGWQW 383
Query: 288 LSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
++ S Y RI++P++ G+K+D NG YIR ++P L+DMP +YI++PW AP I +A
Sbjct: 384 VAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDMPSKYIHKPWEAPEHILQKA 443
Query: 347 KCIIGRDYPAPVVSHDSASKEC 368
+G YP PVV H +A +
Sbjct: 444 NIKLGHTYPLPVVDHKAARERA 465
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 177/345 (51%), Gaps = 17/345 (4%)
Query: 29 IQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS--LSSLPPVGDVGYFEISEVPTVEELGY 86
I K G P + ++ K + + +S+ V+ +S PV + ++ +P++
Sbjct: 135 ITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVESLSVSDLDLLPSIP---- 190
Query: 87 KGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFG 146
+ + S + E A+ + + +K + ++EK + P+ L + LSPYL G
Sbjct: 191 --WDETIKSTWEATEKGAIDVFKTFLKNK--LLHYEKGRDFPAEAL---NSFLSPYLATG 243
Query: 147 CLSSRYFYQCLTDVYQNVKKHTSPPVS--LVGQLLWRDFFYTVAFGTPNFDRMKGNRICK 204
LS+R Y L + V + + QL+WRDF Y + + P+ N K
Sbjct: 244 QLSARVLYHYLRTKAEKVGSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTTTEPLNEKFK 303
Query: 205 QIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEK 264
Q W++ +E L AW+ +TGYP +DA M +L + G+MH+ R A FL + + +HW+
Sbjct: 304 QFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMVAASFLVK-HLLIHWKH 362
Query: 265 GRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPV 323
G + F L+D+D A N W W++ S + Y RI++P++ +K+D G YI+ +LP
Sbjct: 363 GANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEGEYIKKWLPE 422
Query: 324 LKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
LKD+P YI++PW AP + +A + + YPAP+V H +A +
Sbjct: 423 LKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARERA 467
>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
Length = 487
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 143/268 (53%), Gaps = 7/268 (2%)
Query: 103 EALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
EA +L E DK+ + + + + P +PAT+ LSPYL+FG LS+R + +
Sbjct: 216 EAALELLERFLDKK-IRGYGEARDRPD---RPATSRLSPYLRFGQLSARQVWHAAMAAAR 271
Query: 163 NVKKHTSPPVS-LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREA 221
+ + V +L WR+F ++ + P +PW +D+ AW
Sbjct: 272 EGGAAVAADIEKFVSELGWREFDTSLLYHFPELPTRNYRERFDAMPWRDDEAGFTAWCRG 331
Query: 222 RTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAIN 281
RTGYP +DA M +L GWMH+ R VA FL + + + W G F L+D+D A N
Sbjct: 332 RTGYPLVDAGMRELWTTGWMHNRVRMVVASFLIK-HLLIDWRAGERWFWDTLVDADIANN 390
Query: 282 NGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPL 340
+ NW W++ C + Y RI++PV+ G+K+DP G+Y+R ++P L +P + I+EPW A
Sbjct: 391 SANWQWVAGCGADAAPYFRIFNPVTQGRKFDPEGDYVRRWVPELARLPADAIHEPWRAKP 450
Query: 341 TIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+ A ++G+ YP P+V HD+A +
Sbjct: 451 IVLEAAGVVLGQTYPEPIVDHDAARQRA 478
>gi|428222871|ref|YP_007107041.1| DASH family cryptochrome [Synechococcus sp. PCC 7502]
gi|427996211|gb|AFY74906.1| cryptochrome, DASH family [Synechococcus sp. PCC 7502]
Length = 501
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 203/404 (50%), Gaps = 28/404 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K+ D I+ S +TL++P D + + P + SF K + + +P+
Sbjct: 117 KLIDNLKKISIKSESFWGNTLYHP-DALPFAIDRLPELFTSFRKEVEKFCTVNPCVPIP- 174
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQE--ELSPFRGGESEALKKLRESISDKEWVA 119
+ LP + D+ EI E+PT+EELG + + + F GGE++AL++L + +A
Sbjct: 175 TYLPSLQDL---EIGEMPTLEELGLEPAIADPRAVIKFIGGETQALERLDYYFWQSDLIA 231
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
+++ + + ++ SP+L GC+S RY Y + Q K+ S LV +LL
Sbjct: 232 TYKETRN--AMLGGNYSSKFSPWLALGCISPRYIYAQIQKYEQERIKNDST-YWLVFELL 288
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICK-------QIPWSNDDELLAAWREARTGYPWIDAIM 232
WRD+F +A GNRI K +PWS D + W+ +TG+P IDA M
Sbjct: 289 WRDYFRFIA-------TKHGNRIFKVSGLQGINLPWSEDLDKFKLWQMGKTGFPLIDANM 341
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
+L G+M + R VA FLT+ +M ++W+ G + F+ +LID D N GNW + +
Sbjct: 342 QELAATGFMSNRGRQNVASFLTK-NMGINWQLGAEWFESMLIDYDVCSNWGNWNYTAGVG 400
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
+ R ++ + + YDP G Y++H+LP L+ +P ++ PW Q R++ IG+
Sbjct: 401 NDARGFRYFNILKQSQDYDPEGKYVKHWLPALQSVPTVKVHTPWKLLEIEQERSQIRIGK 460
Query: 353 DYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRR 396
DYPAP++ D + K ++ A A+ Q S + N RR
Sbjct: 461 DYPAPILDLDHSVKVNQKAYNSACAIGQ---NSKSSNKRSNFRR 501
>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
Length = 476
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 196/383 (51%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSF 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
+S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 264 FEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGHTYPLPVVEHKAARERA 465
>gi|398974400|ref|ZP_10685027.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM25]
gi|398141602|gb|EJM30518.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM25]
Length = 488
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 190/373 (50%), Gaps = 32/373 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + GI S + LF P ++ K G + + F K+ + L S P SL
Sbjct: 120 VAEALQAEGITFHSYLDQLLFKPGSVLTKTGTYFQV-FSQFRKVCYERLHRSMP---SLK 175
Query: 63 SLPPVGDVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P G I+ P E + G+ G+ + + GE+EA ++L ++ +D + ++
Sbjct: 176 QAP--GKQSALNIASDPVPEAIEGFPTPGESLRALWPAGEAEARRRL-DTFADAQ--IDY 230
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQ 177
K + D A KP T+ LS YL G +S R QCL Q+ + V+ + +
Sbjct: 231 YKSERDFPA--KPGTSQLSAYLAAGVISPR---QCLHAALQSNQGEFESGKVGAVTWINE 285
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ + G P R + R + + W + E LAAW+EARTG P IDA M QL
Sbjct: 286 LLWREFYKHILVGYPRVSRHRAFRPETEALAWRDAPEELAAWQEARTGLPIIDAAMRQLL 345
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFY 295
+ GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 346 ETGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSA 404
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDY 354
Y RI++PVS +K+D G +I+H+LP L + K+ ++ P A + G DY
Sbjct: 405 PYFRIFNPVSQSEKFDSEGLFIKHWLPELAGLNKKEVHNP--------ASAGGLFGVADY 456
Query: 355 PAPVVSHDSASKE 367
PAP+V+ SAS+E
Sbjct: 457 PAPIVNL-SASRE 468
>gi|365160129|ref|ZP_09356302.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624172|gb|EHL75256.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 476
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 196/383 (51%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMILEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSF 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
+S + QL+WR+F Y + + P N+ + PW ++ELL W++ +TGYP
Sbjct: 264 FEKQVISFIRQLIWREFSYYLLYHYPFTVYRPLNKSFENFPWDKEEELLRVWQKGKTGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPAHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP P+V H +A +
Sbjct: 443 ANIKLGDTYPYPIVDHKAARERA 465
>gi|423447663|ref|ZP_17424542.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
gi|401130074|gb|EJQ37743.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
Length = 476
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 140/237 (59%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S R Y L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW+N++ELL W++ TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F LID+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLIDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+D+P +YI++PW AP I +A +G YP PVV H +A +
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 188/382 (49%), Gaps = 25/382 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + S G+ V + L P +I+ K + P + + Q L P P
Sbjct: 111 VSEVLSRHGVFVHACKDLVLHEPGEIMTKQ--RTPYAVFTPYRRVWQTLPKDRPFP---- 164
Query: 63 SLPPVGDVGYFEISE-----VPTVEELGY-KGYGQE-ELSPFRGGESEALKKLRESISDK 115
P + + + E VPTVE G + G E E+ F GE A K+L++ + D+
Sbjct: 165 --QPTEWILFDRLKELPSEPVPTVEAFGRNRPMGTEWEMEQF--GERAARKRLQQFL-DR 219
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SL 174
+ + +++ + P AT+ LS L G LS R Y + +V + + + +
Sbjct: 220 D-IYTYKEKRDMPGVN---ATSRLSFALNAGTLSIRTVYHRVQEVLASARGEQVTSIEAF 275
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +L+WR+F+ V + P+ +++ W N +L W + TGYP +DA M Q
Sbjct: 276 LTELIWREFYQQVLYFHPHTTNHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQ 335
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L + GWMH+ R A FLT+ D+ V W G F + LID D A N G W W + +
Sbjct: 336 LNETGWMHNRLRMITASFLTK-DLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTD 394
Query: 295 YQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Q Y RI++PV+ G+K+D +G +++ +LPVL+++P +YI++PW P IQ +A C IG D
Sbjct: 395 AQPYFRIFNPVTQGEKFDRDGVFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFD 454
Query: 354 YPAPVVSHDSASKECKRKLGEA 375
YP P V H K EA
Sbjct: 455 YPLPCVDHAQRRKLAMALFQEA 476
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 179/371 (48%), Gaps = 27/371 (7%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPL--TYQSFLKLAGQ---PL-----WASSPLPV 59
AGIEV S L P +I +GG + Y + AG+ PL W LP
Sbjct: 125 AGIEVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELPAPLAEPAKWRFHRLPE 184
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
+L+ D + +P + + G +E P E L +L E+ DK+ +
Sbjct: 185 ALARRATRIDA----LGLLPVRPD--WAGGLREAWEP---SEEGGLARL-EAFLDKQ-IR 233
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS-LVGQL 178
+ + P +PAT+ LSPYL+FG LS+R + + + + + +L
Sbjct: 234 GYGDARDRPD---RPATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADIEKFLSEL 290
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F ++ + P +PW +D+ AAW RTGYP +DA M +L
Sbjct: 291 GWREFNTSLLYHFPELPMRNYRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWAT 350
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQY 297
GWMH+ R A FL + + + W G F L+D+D A N+ NW W++ S Y
Sbjct: 351 GWMHNRVRMVTASFLIK-HLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPY 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
RI++PV G+K+DP+G Y+R ++P L +P + I+EPW A + A ++GR YPAP
Sbjct: 410 FRIFNPVMQGRKFDPDGAYVRRWVPELAGLPADAIHEPWRAKPVVLEAAGVVLGRTYPAP 469
Query: 358 VVSHDSASKEC 368
+V HD+A K
Sbjct: 470 IVDHDAARKRA 480
>gi|384181025|ref|YP_005566787.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 476
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 193/385 (50%), Gaps = 24/385 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K+K GI SH L P I +K+ + Y+ F P P+S
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWVIKKKDNTE----YKVFTPFYNAFQKQIVPKPISK 162
Query: 62 SSLPPVGDV--GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
G+ +SE+ + + + + + P G + KK S +A
Sbjct: 163 VQRIKGGNSLPASLSVSELHLLPTIRWTTHMESIWDPTEEGAYKTCKKFFSSK-----LA 217
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLV 175
++ + + P+ + A ++L+PYL FG +S ++ Y L D ++ ++ S S +
Sbjct: 218 SYSEGRDFPN---ENAHSMLAPYLSFGQISVKWMYHYLID--KSTERQCSLFEKQVNSFI 272
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP+IDA M +L
Sbjct: 273 RQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMREL 332
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
+ G+MH+ AR VA FL + + + W++G F L+D+D A N W W++ S
Sbjct: 333 WQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADA 391
Query: 296 Q-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +A +G Y
Sbjct: 392 SPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTY 451
Query: 355 PAPVVSHDSASKE--CKRKLGEAYA 377
P PVV H +A + C K + +A
Sbjct: 452 PLPVVDHKAARERALCAYKSMKEFA 476
>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
Length = 476
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
KVK GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KVKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKVMYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase [Bacillus cereus B4264]
gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
Length = 476
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 196/383 (51%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMILEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSF 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
+S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 264 FEKQVISFIRQLIWREFSYYLLYHYPFTAYKPLNKNFEHFPWNKEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWIPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
+ +G YP P+V H +A +
Sbjct: 443 SNIKLGNTYPYPIVDHKAARERA 465
>gi|372487277|ref|YP_005026842.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
gi|359353830|gb|AEV25001.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
Length = 482
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 160/315 (50%), Gaps = 22/315 (6%)
Query: 78 VPTVEELGYKGYGQEELS--PFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
VP++ ++G+ E + P G + + R+ + +F KG
Sbjct: 187 VPSLADIGFLPTDLERIGVVPGMSGGAARWQDFRQRLERYAEQRDFPAVKG--------- 237
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
+ LS YL+FGCLS R Q + +++ + + + +L+WRDF++ V P
Sbjct: 238 VSYLSVYLRFGCLSIR---QLAGEAWRSGGPGAA---TWLSELIWRDFYFMVLDRFPQLP 291
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
++ W LLAAWRE RTGYP +DA M QL + GWMH+ R VA FLT+
Sbjct: 292 DGCFKPEFDRVLWDEAPALLAAWREGRTGYPLVDAAMRQLAQTGWMHNRLRMVVASFLTK 351
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNG 314
D+ + W G F LL+D D + NNG W W + + Q + RI++PV+ +K+DP G
Sbjct: 352 -DLGLDWRLGEGHFADLLLDFDLSANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPQG 410
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGE 374
+IR ++P L +P ++I+ PW Q A IIGRDYPAPVV H+ A +R L
Sbjct: 411 RFIRRYVPELAGVPDKHIHAPWRMAPLEQQAAGVIIGRDYPAPVVDHNLAR---QRTLAR 467
Query: 375 AYALNQKLNGQVSED 389
A+ K + + +
Sbjct: 468 FEAVKGKAGKEAAAE 482
>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|376267016|ref|YP_005119728.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|364512816|gb|AEW56215.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
Length = 476
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 152/273 (55%), Gaps = 21/273 (7%)
Query: 101 ESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160
E A K ++ S K +A++ + + P+ + A ++L+PYL FG +S + Y L
Sbjct: 201 EEGAYKTCKKFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL--- 252
Query: 161 YQNVKKHTSPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
+ K T SL + QL+WR+F Y + + P N+ + PW+N+
Sbjct: 253 ---INKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTAYKPLNKSFEHFPWNNEK 309
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
ELL W++ TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F
Sbjct: 310 ELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIK-HLLIPWQEGAKWFMDT 368
Query: 273 LIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
L+D+D A N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +Y
Sbjct: 369 LLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIREWVPELKDMPNKY 428
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
I++PW AP I +A +G YP PVV H +A
Sbjct: 429 IHKPWEAPEHILQKANIQLGHTYPLPVVDHKAA 461
>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 476
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVNKPLNKNFEHFPWNNEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
Length = 476
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 152/273 (55%), Gaps = 21/273 (7%)
Query: 101 ESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160
E A K ++ S K +A++ + + P+ + A ++L+PYL FG +S + Y L
Sbjct: 201 EEGAYKTCKKFFSSK--LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYL--- 252
Query: 161 YQNVKKHTSPPVSL--------VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
+ K T SL + QL+WR+F Y + + P N+ + PW+N+
Sbjct: 253 ---INKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTAYKPLNKSFEHFPWNNEK 309
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
ELL W++ TGYP+IDA M +L + G+MH+ R VA FL + + + W++G F
Sbjct: 310 ELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIK-HLLIPWQEGAKWFMDT 368
Query: 273 LIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
L+D+D A N W W++ S Y RI++P++ G+K+D NG YIR ++P LKDMP +Y
Sbjct: 369 LLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKY 428
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
I++PW AP I +A +G YP PVV H +A
Sbjct: 429 IHKPWEAPEHILQKANIQLGHTYPLPVVDHKAA 461
>gi|423465178|ref|ZP_17441946.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
gi|402418939|gb|EJV51227.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
Length = 476
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 140/237 (59%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S R Y L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW+N++ELL W++ TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+D+P +YI++PW AP I +A +G YP PVV H +A +
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|423379068|ref|ZP_17356352.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|423442112|ref|ZP_17419018.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|423534525|ref|ZP_17510943.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
gi|423540200|ref|ZP_17516591.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|423546432|ref|ZP_17522790.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|423623773|ref|ZP_17599551.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|401173735|gb|EJQ80947.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|401181001|gb|EJQ88155.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|401257696|gb|EJR63893.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|401633514|gb|EJS51291.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|402416068|gb|EJV48387.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|402462942|gb|EJV94645.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
Length = 476
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 140/237 (59%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S R Y L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW+N++ELL W++ TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+D+P +YI++PW AP I +A +G YP PVV H +A +
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERA 465
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 181/368 (49%), Gaps = 17/368 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA----GQPLWASSPL 57
K+K + I V S + L+ P + K+ G P + F + G+P P+
Sbjct: 110 KIKTALEQSSIAVKSSNASLLYEPW-TVSKDDGTPYKVFTPFFRKGCLGRGEP-----PV 163
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P+ L P + + ++ L + + + GE A ++L + +
Sbjct: 164 PLGLPHHVPTFFPRLKQSLHIDDLDLLPSIKWDKGFHDIWTPGEHGARERLGQFLDHG-- 221
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
+ +++ + P + + LSP+L FG +S R + + + + + +
Sbjct: 222 LKGYKEGRNHPD---RENVSRLSPHLHFGEISPRTAWHAVRHAMEADPTIETDGDCFLSE 278
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
L WR+F Y++ + P+ PW +D+ L AW+ +TGYP +DA M QL +
Sbjct: 279 LGWREFSYSLLYTHPDLPTQPLQHKFAGFPWDKNDKALRAWQMGKTGYPIVDAGMRQLWQ 338
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQ 296
GWMH+ R VA FL + D+ + W G + F L+D+D A N +W W++ C +
Sbjct: 339 TGWMHNRVRMIVASFLIK-DLMLPWTAGEEWFWDTLVDADLANNAASWQWVAGCGADAAP 397
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y RI++PV+ G K+DP+GNYIR F+P L +P +YI+EPWTAP + +A +G+ YP
Sbjct: 398 YFRIFNPVTQGTKFDPDGNYIRTFVPELAALPAKYIHEPWTAPANVLKQAGVEMGKTYPM 457
Query: 357 PVVSHDSA 364
P+V H +A
Sbjct: 458 PIVDHKAA 465
>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
Length = 374
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 142/256 (55%), Gaps = 13/256 (5%)
Query: 12 IEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVG 71
I+ S + HTL++ ++I KNGGK P+ F +P P S + P D
Sbjct: 125 IKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTS--CIAPAVD-N 181
Query: 72 YFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAY 131
+ +P + G++ L +RGGE +ALK L+ I+D +G +
Sbjct: 182 HESTYGIPKISVWGHQA--PRSLPIYRGGERQALKALQAKINDPTLFTLNGFNQGVKTKL 239
Query: 132 LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGT 191
P TT LS Y +GC+S+R+F++ + + S + L GQ+++R+FFY A
Sbjct: 240 --PHTTYLSAYQNYGCISTRHFWKAAEKLPE------SKTIMLRGQIMYREFFYVAASQV 291
Query: 192 PNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
NF +M GNRIC+QI W ++E L+AW+E RTGYP+IDA+M QL G++HHL R VA
Sbjct: 292 NNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVAS 351
Query: 252 FLTRGDMFVHWEKGRD 267
FLT G ++++WE G++
Sbjct: 352 FLTNGQLWLNWEHGQE 367
>gi|392531474|ref|ZP_10278611.1| deoxyribodipyrimidine photo-lyase [Carnobacterium maltaromaticum
ATCC 35586]
Length = 475
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 143/266 (53%), Gaps = 17/266 (6%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
G +A K+LR+ IS + +++ + P+ + T+ LS +L+ G LS R +
Sbjct: 207 GALKARKRLRQFISSG--IEQYDQTRDFPA---QKGTSRLSQFLRTGELSIR-------E 254
Query: 160 VYQNVKKHTSPPV---SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLA 216
VY +K + + + +L WRDF+ + F P ++ + + W+ND++LL
Sbjct: 255 VYHRIKAEAPDSIGKETYLKELCWRDFYNMIYFENPQQQVLEIKEQYRNLQWNNDEQLLQ 314
Query: 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS 276
AW+ +TGYP +DA M QL + GWMH+ R A FL + D+ + W G F LID
Sbjct: 315 AWKTGQTGYPLVDAAMRQLNQTGWMHNRLRMIAASFLVK-DLLMDWRLGEAYFAEKLIDY 373
Query: 277 DWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
D A N G W W S + Y RI++P + +++D G++I ++P LK +P Y++EP
Sbjct: 374 DAASNIGGWQWAASTGTDAVPYFRIFNPTTQSQRFDEAGDFIYKYVPELKGIPHAYLHEP 433
Query: 336 WTAPLTIQTRAKCIIGRDYPAPVVSH 361
PL IQ + IIG DYP P+V H
Sbjct: 434 SKMPLNIQQEKQIIIGEDYPQPIVQH 459
>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
Length = 476
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis]
Length = 216
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 6/198 (3%)
Query: 196 RMKGNRICKQIPWS-NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
RM+ N IC IPW+ + E L W + +TG+P IDA M QL GW+HH R+ VA FLT
Sbjct: 1 RMEDNEICLNIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLT 60
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDP 312
RG ++ +WE G F + L+D+DW++ GNW+W+S S+F + + P++ K+ DP
Sbjct: 61 RGGLWQNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDP 120
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
G YI+ ++P L ++PKEYI+EPW P+ +Q ++C+IG YP ++ + AS KR +
Sbjct: 121 MGQYIKQYVPELANVPKEYIHEPWNMPINVQENSECVIGIHYPERLIDLNVAS---KRNM 177
Query: 373 GEAYALNQKLNGQVSEDG 390
L L + + D
Sbjct: 178 NAMRTLRNSLIAEGAPDN 195
>gi|423605178|ref|ZP_17581071.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
gi|401244326|gb|EJR50690.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
Length = 476
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
Pf0-1]
gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
Pf0-1]
Length = 488
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/365 (34%), Positives = 185/365 (50%), Gaps = 32/365 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GI S + LF P ++ + G + + F K+ + L S P SL P G
Sbjct: 128 GITFHSYLDQLLFKPGSVLTRTGTYFQV-FSQFRKVCYEHLHRSMP---SLKQAP--GKQ 181
Query: 71 GYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
I+ P E + G+ G + + GE+EA ++L ++ +D + ++ K + D
Sbjct: 182 SALNIASDPVPEAIEGFPTPGASLRALWPAGETEARRRL-DTFADAQ--IDYYKSERDFP 238
Query: 130 AYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFY 185
A KP T+ LS YL G +S R QCL Q+ + V+ + +LLWR+F+
Sbjct: 239 A--KPGTSQLSAYLAAGVISPR---QCLHAALQSNQGEFESGKVGAVTWINELLWREFYK 293
Query: 186 TVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ G P R + R + + W N E LAAW+EARTG P IDA M QL + GWMH+
Sbjct: 294 HILVGYPRVSRHRAFRPETEDLAWRNAPEDLAAWQEARTGLPIIDAAMRQLLETGWMHNR 353
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSP 303
R VA FLT+ ++ + W +G F R LID D A NNG W W S + Y RI++P
Sbjct: 354 LRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSAPYFRIFNP 412
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDYPAPVVSHD 362
VS +K+D G +I+H+LP L + K+ I+ P + G DYPAP+V+
Sbjct: 413 VSQSEKFDSEGLFIKHWLPELAGLNKKEIHNP--------ASVGGLFGVADYPAPIVNL- 463
Query: 363 SASKE 367
SAS+E
Sbjct: 464 SASRE 468
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 173/363 (47%), Gaps = 35/363 (9%)
Query: 12 IEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF----LKLAGQPLWAS-------SPLPVS 60
IE + L P D ++ G+P Y F ++ QP ++ SP S
Sbjct: 123 IESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEKS 182
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
L++ G++ ++PT + LGY+ + L P GE+ AL +L + D+ +A
Sbjct: 183 LAN--KAGNI------DLPTAKALGYEWENELLLQP---GEAAALAQLEKFCDDRRVIAE 231
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--L 178
+++ + PS T+ LS LKFG L R ++ +D Y + + Q L
Sbjct: 232 YDQQRDYPSI---AGTSTLSAALKFGTLGIRTVWEAASDAYSRARSEETHRNIRTWQQEL 288
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F+ +V + PN K PW ND++L AW E +TGYP +DA M QL +
Sbjct: 289 AWREFYQSVMYTFPNLAEGPYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNQT 348
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GWMH+ R VA FLT+ D+ + W G F + L D D + NNG W W + S +
Sbjct: 349 GWMHNRCRMIVASFLTK-DLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKPL 407
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P S KKYDP YIR +LP ++ + A ++ + + + G YP V
Sbjct: 408 RIFNPASQAKKYDPEAEYIREWLPEIRHLDT-------GALVSGKIDSNDLEGTGYPCKV 460
Query: 359 VSH 361
V H
Sbjct: 461 VDH 463
>gi|423551107|ref|ZP_17527434.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
gi|401188440|gb|EJQ95508.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
Length = 476
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTILWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
Length = 476
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 196/383 (51%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMILEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSF 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
+S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 264 FEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
+ +G YP P+V H +A +
Sbjct: 443 SNIKLGNTYPYPIVDHKAARERA 465
>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
Length = 476
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|423575239|ref|ZP_17551358.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
gi|401209847|gb|EJR16604.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
Length = 476
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKVMYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|343509312|ref|ZP_08746596.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
gi|342805079|gb|EGU40359.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
Length = 483
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 29/285 (10%)
Query: 102 SEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY 161
S+A+++L E V N+ + P+ AT++LSPYL G LS R QC+ V
Sbjct: 213 SKAIRQLLREFC-HERVDNYHNDRDKPAL---NATSMLSPYLAIGALSVR---QCVARVL 265
Query: 162 QNVKKH--TSPPV-----SLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC---KQIPWSND 211
+ + H TSP + + + +L+WRDF+ + P KG +++ W
Sbjct: 266 YSAQAHQITSPLLGEGIHTWISELVWRDFYQHLLHFEPKL--CKGRHFVTWTEKLHWPGS 323
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ LAAW++ TGYP +DA M QL + GWMH+ R VA FLT+ D+ +HW G F +
Sbjct: 324 KQHLAAWQKGMTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK-DLHLHWHHGERYFMQ 382
Query: 272 LLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
L+D D+A NNG W W + + Q Y RI++P + G+++DP+G++IRH++P L +P +
Sbjct: 383 KLVDGDYAANNGGWQWSASTGCDAQPYFRIFNPTAQGERFDPDGDFIRHWIPELSAVPNK 442
Query: 331 YIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
+I++PW R + +I YP P+V H S + R +A
Sbjct: 443 FIHQPW--------RWENVISLSYPKPMVDHKSEREITLRLFQDA 479
>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
Length = 477
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 151/279 (54%), Gaps = 22/279 (7%)
Query: 93 ELSP-FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
E SP F GE AL KLR+ S++ V ++++ + P+ T+ LSPYL G LS R
Sbjct: 196 ETSPQFIAGEHAALAKLRQFCSER--VQDYQRDRDIPAIN---GTSQLSPYLALGVLSPR 250
Query: 152 YFYQCLTDVY----QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQI 206
QC+ + Q S S + +L+WR+F+ + P R + + + I
Sbjct: 251 ---QCVNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQPFIKWTQHI 307
Query: 207 PWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGR 266
W+ DD + +AW+ +TGYP +DA M QL + GWMH+ R VA FL + D+ V W KG
Sbjct: 308 QWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVK-DLLVDWRKGE 366
Query: 267 DVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
F LID A NNG W W + + + RI++P + GKK+DP G +IR +LP L+
Sbjct: 367 HYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIREWLPELR 426
Query: 326 DMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
D+P+++I+EP T + Q + +YP P+V H A
Sbjct: 427 DVPEKFIHEPHTWAESHQ------VSLNYPTPIVDHKQA 459
>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
Length = 513
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 149/297 (50%), Gaps = 17/297 (5%)
Query: 79 PTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPAT 136
P + +LG+ E++ G G + + I D + +F +G
Sbjct: 216 PMLHDLGFAASNLAEIAMPTGSDGARALFDEFIDRIGDYGYRRDFPSLRG---------P 266
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDR 196
+ LS +L+FG +S R + D ++ + +L+WRDF++ + P
Sbjct: 267 SYLSVHLRFGTISIRTLARAALDAVLRGGSESAGAAVWLSELIWRDFYFMILHHHPRVAD 326
Query: 197 MKGNR----ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
K R + + D+ AW +A+TGYP +DA M+Q+R+ G+MH+ R A F
Sbjct: 327 GKSFRPEYDALQWVDSVTGDKYFQAWCDAQTGYPLVDAAMLQIRQSGYMHNRLRMVTASF 386
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + D+ V W +G F L D D++ NNG W W + + Q Y RI++PV +K+D
Sbjct: 387 LVK-DLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVKQSEKFD 445
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
P G +IR +LPVL MP +YI+ PWTAP+ + A +G +YP P+V H+ A K+
Sbjct: 446 PQGRFIRKYLPVLAQMPDQYIHAPWTAPVNVLATAGVKLGENYPPPIVQHEVARKQT 502
>gi|254786801|ref|YP_003074230.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
gi|237686103|gb|ACR13367.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
Length = 465
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 150/277 (54%), Gaps = 24/277 (8%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GE EA ++L K+ ++ + + + P+ T+ LSPYL G +S+R QC+
Sbjct: 200 AGEDEAHRRLHRF--GKDGMSRYHEDRDFPAV---DGTSTLSPYLAVGAISTR---QCMD 251
Query: 159 DVYQN----VKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDE 213
Q + T + + +L+WRDF+ + +G P+ + K + +++PW +D
Sbjct: 252 AAIQQGGMENDQSTQGAQTWLSELVWRDFYRHLLYGYPDLCKFKAFQQNTERLPWRHDSR 311
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
LL AW+E RTG+P +DA M QL + GWMH+ R A FLT+ +FV W G D F + L
Sbjct: 312 LLTAWQEGRTGFPIVDAAMKQLVQTGWMHNRLRMITAMFLTK-HLFVDWRLGEDFFMQHL 370
Query: 274 IDSDWAINNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
+D D A NNG W W + + Y RI++P +++DPNG +IRH+LP LK++ + I
Sbjct: 371 VDGDLASNNGGWQWSASTGVDAAPYFRIFNPTRQSERFDPNGEFIRHYLPELKNLSNKAI 430
Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECK 369
+ P ++ C YP P+V H +A K+ K
Sbjct: 431 HSP-----SVIEAESC----GYPKPIVDHSTAVKQTK 458
>gi|432928263|ref|XP_004081133.1| PREDICTED: cryptochrome DASH-like [Oryzias latipes]
Length = 521
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 178/366 (48%), Gaps = 19/366 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSP 56
KVK+ + ++V + TLF+ D+ + + P Y F K +P++ P
Sbjct: 121 KVKEVCAQMEVKVHTCWGSTLFHRDDLPFPHMARLPDVYTEFRKAVESKSRVRPVF---P 177
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISD 114
P L+SLPP E +PT E+L + S F GGES+AL +L+ D
Sbjct: 178 TPDRLNSLPPG-----LEGGAIPTAEDLEQTEPETDPRSAFPCSGGESQALARLKHYFWD 232
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ VA +++ + +T SP+L GC+S RY Y + Y+ + +
Sbjct: 233 TDAVATYKETRNGLIGV--DYSTKFSPWLAMGCISPRYIYHQIKK-YEQERTANQSTYWV 289
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +LLWRD+F V N K +PW D +L AW+E RTG P++DA M +
Sbjct: 290 IFELLWRDYFKFVGVKYGNKMFFIKGLQDKSLPWKRDTKLFDAWKEGRTGVPFVDANMRE 349
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L G+M + R VA FLT+ D+ + W G + F+ LLID D N GNWL+ +
Sbjct: 350 LAMTGFMSNRGRQNVASFLTK-DLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGND 408
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+ NR ++ + YD NG+Y+R ++P L + ++ PW +RA+ +G Y
Sbjct: 409 PRENRKFNMIKQALDYDSNGDYVRQWIPELTAVRGGDVHTPWNLSSAALSRARVSLGETY 468
Query: 355 PAPVVS 360
P P+V+
Sbjct: 469 PTPIVT 474
>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
Length = 476
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 193/382 (50%), Gaps = 38/382 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLKLA-------GQPL 51
K+K GI SH L P I +K+ + + Y +F K Q +
Sbjct: 107 KMKIVLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRI 166
Query: 52 WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
S LP SLS +SE+ + + + + + +P G + KK S
Sbjct: 167 KGGSSLPASLS------------VSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFS 214
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS-- 169
+A++ + + P+ + A ++L+PYL FG +S R+ Y L + ++ ++ S
Sbjct: 215 K-----LASYSEGRDFPN---ENAHSMLAPYLSFGQISVRWMYHYLIN--KSTERQCSLF 264
Query: 170 --PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP+
Sbjct: 265 EKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPF 324
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W W
Sbjct: 325 IDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQW 383
Query: 288 LSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +A
Sbjct: 384 VAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKA 443
Query: 347 KCIIGRDYPAPVVSHDSASKEC 368
+G YP PVV H +A +
Sbjct: 444 NIKLGDTYPLPVVDHKAARERA 465
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 181/376 (48%), Gaps = 34/376 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSL-----P 65
GI+ + L P +I+ K+G +P Y F K L + + +L SL
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSG-EPYKVYTPFWK--NWELQSKDSITNNLESLEGLTQT 177
Query: 66 PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLR----ESISDKEWVANF 121
+ I ++PTV+ELGY+ LSP GE+ A ++L +I++ + NF
Sbjct: 178 ELQQAKNVNIIDLPTVQELGYRWDYPLILSP---GETAAAERLDYFCDAAINEYQEQRNF 234
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT--SPPVSLVGQLL 179
+G T+ LSP LKFG + R +Q +N + V+ +L
Sbjct: 235 PAIEG---------TSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELA 285
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+F+ + P + PW N++ L AW E +TGYP +DA M QL + G
Sbjct: 286 WREFYQHCLYFFPELAEGPYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETG 345
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
WMH+ R VA FLT+ D+ ++W+ G F + LID D A NNG W W + S + R
Sbjct: 346 WMHNRCRMIVASFLTK-DLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKPLR 404
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
I++P S +K+DP+ +YIR +LP L+ + E + +PL + YP P+V
Sbjct: 405 IFNPASQAQKFDPDADYIRQWLPELRSLDTEVLVTGKISPLD-------CLSCGYPQPIV 457
Query: 360 SHDSASKECKRKLGEA 375
+H+ +E KR+ +
Sbjct: 458 NHNQQQREFKRRYSQV 473
>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
Length = 476
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW ++ELL W++ +TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
Length = 476
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 152/271 (56%), Gaps = 9/271 (3%)
Query: 101 ESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD- 159
E A K ++ S K +A++ + + P+ + A ++L+PYL FG +S R+ Y L +
Sbjct: 201 EEGAYKTCKKFFSSK--LASYSEGRDFPN---ENAHSMLAPYLSFGQISVRWMYHYLINK 255
Query: 160 -VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAW 218
+ S + Q +WR+F Y + + P N+ + PW+N++ELL W
Sbjct: 256 STERQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNNEEELLTVW 315
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
++ TGYP+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D
Sbjct: 316 QKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADI 374
Query: 279 AINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
A N W W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW
Sbjct: 375 ANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWE 434
Query: 338 APLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
AP I A +G YP P+V H +A +
Sbjct: 435 APEHILQEANIQLGHTYPLPIVDHKAARERA 465
>gi|343503903|ref|ZP_08741705.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
gi|342813488|gb|EGU48457.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
Length = 471
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 151/275 (54%), Gaps = 24/275 (8%)
Query: 106 KKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK 165
++LR+ D+ V+++ + PS AT+ LSPYL G LS R QC+ V
Sbjct: 212 QQLRDFCHDR--VSHYHAERDKPSL---NATSQLSPYLAIGALSVR---QCIARVLFATN 263
Query: 166 KHTSPPVSL-VGQLLWRDFFYTVAFGTPNFDRMKGNRIC---KQIPWSNDDELLAAWREA 221
H + + +L+WRDF+ + P KG +++ WS D + L AW++
Sbjct: 264 VHLDAGREMWISELVWRDFYQHLLHFEPKL--CKGRNFVAWTEKVHWSGDKKHLVAWQKG 321
Query: 222 RTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAIN 281
TGYP +DA M QL K GWMH+ R VA FLT+ D+ +HW G + F + L+D D+A N
Sbjct: 322 ETGYPIVDAAMRQLNKTGWMHNRLRMVVASFLTK-DLHLHWRHGEEYFMQKLVDGDYAAN 380
Query: 282 NGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPL 340
NG W W + + Q Y RI++P + G+++DP+G+++RH++P L +P ++I++PW
Sbjct: 381 NGGWQWSASTGCDGQPYFRIFNPTAQGERFDPDGDFVRHWVPELSAVPNKFIHQPW---- 436
Query: 341 TIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
+ + +I YP P+V H S + R +A
Sbjct: 437 ----QWENVISLSYPKPMVDHKSEREITLRLFQDA 467
>gi|423562452|ref|ZP_17538728.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
gi|401200617|gb|EJR07502.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
Length = 476
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L K G+MH+ R VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWKTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGNTYPLPVVDHKAARERA 465
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 170/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 119 TKGIEVETFWDQLLHAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPTTLENLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE A +L E + N+++ + P
Sbjct: 178 GEKLTETINLPTLENLGFTWQNPLPLTP---GEKAANSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AV---DGTSRLSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 476
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 171/322 (53%), Gaps = 29/322 (9%)
Query: 52 WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
W SS LP SLS +SE+ + + + + + P G + KK S
Sbjct: 168 WGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSS 214
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS-- 169
+A + + + P+ + A ++L+PYL FG + + Y L + ++ ++ S
Sbjct: 215 K-----LAFYSEGRDFPN---QNAHSMLAPYLSFGQIPVKLMYHYLIN--KSTERQCSLF 264
Query: 170 --PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
+S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP+
Sbjct: 265 EKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPF 324
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W W
Sbjct: 325 IDAGMRELWQTGFMHNRARMAVASFLVK-HLLISWQEGAKWFMDTLLDADIANNTMGWQW 383
Query: 288 LSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +A
Sbjct: 384 VAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKA 443
Query: 347 KCIIGRDYPAPVVSHDSASKEC 368
+G YP PVV H +A +
Sbjct: 444 NIKLGHTYPLPVVDHKAARERA 465
>gi|339327951|ref|YP_004687643.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
gi|338170552|gb|AEI81605.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
Length = 511
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 174/352 (49%), Gaps = 20/352 (5%)
Query: 26 ADIIQKNGGKPPLTYQSFLK--LAGQPLWASSPLPVS--LSSLPPVGDVGYFEISEVPTV 81
AD + G+P + + L G + P PV L +L PV Y ++S P +
Sbjct: 162 ADDLMTGQGQPFSVFTPYKNAWLRGVQPFDLRPYPVDKYLGALAPVPR-QYQKVS--PML 218
Query: 82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSP 141
++LG+ E++ G S+ + L + D+ + ++ + PS + LS
Sbjct: 219 DDLGFAVSNLVEIAMPTG--SDGARALFDEFIDR--IGDYGNRRDFPSLR---GPSYLSV 271
Query: 142 YLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNR 201
+L+FG +S R + D ++ + +L+WRDF++ + P K R
Sbjct: 272 HLRFGTISIRTLARAALDAVLRGGSKSAGAAVWLSELIWRDFYFMILHHHPRVADGKSFR 331
Query: 202 ----ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+ + D AW +A+TGYP +DA M+Q+ + G+MH+ R A FL + D
Sbjct: 332 PEYDALRWVDSVTGDRYFQAWCDAQTGYPLVDAAMLQIHQSGYMHNRLRMVTASFLVK-D 390
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNY 316
+ V W +G F L D D++ NNG W W + + Q Y RI++PV +K+DP G +
Sbjct: 391 LGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVMQSEKFDPQGRF 450
Query: 317 IRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
IR +LPVL MP +YI+ PWTAP+ + A +G +YP P+V HD A KE
Sbjct: 451 IRKYLPVLAQMPDKYIHAPWTAPVNVLATAGVKLGENYPPPIVQHDVARKET 502
>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340782929|ref|YP_004749536.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340557080|gb|AEK58834.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 476
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 150/270 (55%), Gaps = 7/270 (2%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A ++LR+ + + +A++ + + P KP + LSPYL G +S R + L+
Sbjct: 202 GEEAAWRRLRDFVDEG--LAHYAEGRNLPG---KPFVSRLSPYLAHGEISPRQIWWHLSR 256
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ + + + +L WR+F + + + P+ R ++ PW D L AW
Sbjct: 257 LAEEQGAWRRNVDAFLRELGWREFSWHLLYHFPDLPREPLRPEFQRFPWRQDPAALRAWT 316
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
ARTGYP IDA M +L + GWMH+ R VA FL + D+ + W++G F L+D+D A
Sbjct: 317 RARTGYPIIDAGMRELWESGWMHNRVRMIVASFLVK-DLRIPWQEGEAWFWDTLVDADLA 375
Query: 280 INNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N+ +W W++ C + Y R+++PV +K+DP G+Y+R +LP L+ +P ++I+ PW A
Sbjct: 376 NNSASWQWVAGCGADAAPYFRVFNPVLQAQKFDPQGDYVRRWLPQLQRLPADHIHAPWQA 435
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
P + +A +G++YP P+V H A +
Sbjct: 436 PAVVLEQAGIALGKEYPRPLVDHHEAREAA 465
>gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
Length = 481
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 127/393 (32%), Positives = 193/393 (49%), Gaps = 44/393 (11%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP---------LPVS 60
AGI V + LF P ++ K+GG + + F K+ L + P LP+S
Sbjct: 120 AGISVQGHLDQLLFQPGSVLTKSGGYFQV-FSQFRKVCYSRLHTALPALVKAPGAQLPLS 178
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+++ P V F S + EL + G+ EA ++L E SD++ +
Sbjct: 179 INADPLPQRVEGFP-SPTQALREL------------WPAGDDEAQRRL-EKFSDEQ-IHY 223
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP-PVSLVGQLL 179
++ + P+ KP T+ LSPYL G +S R Q + SP V+ + +LL
Sbjct: 224 YQSERDFPA---KPGTSQLSPYLAAGVISPRQCLHAALRGNQGEFESGSPGAVTWINELL 280
Query: 180 WRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F+ + G P R + R + + W + E LAAW+EARTG P IDA M QL +
Sbjct: 281 WREFYKHILVGYPRVSRHRAFRPETEAVKWRHAPEELAAWQEARTGLPIIDAAMRQLLET 340
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQY 297
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 341 GWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPY 399
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR-DYPA 356
RI++P+S +K+D G +I+H+LP L + K+ I+ P + G YPA
Sbjct: 400 FRIFNPISQSQKFDSEGRFIKHWLPQLAGLNKKDIHNP--------AAMGGLFGVPGYPA 451
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNGQVSED 389
P+V S+ +R L AL +++ VS +
Sbjct: 452 PIV---DLSRSRERALAAFKALPARMDAGVSHE 481
>gi|335346423|gb|AEH41599.1| cry1-like protein [Favia fragum]
Length = 120
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 93/119 (78%)
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
LARH V CFLTRGD+++ WE+G VFDR L+D++W++N GNW+WLS S+FF Q+ P
Sbjct: 1 LARHAVGCFLTRGDLWISWEEGMRVFDRWLLDAEWSLNAGNWMWLSYSAFFQQFFNCLCP 60
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
V FG+K DPNG+Y++ +LPVLK P +YI+ PWTAP ++Q A+CIIG+DYP P+V H+
Sbjct: 61 VGFGRKLDPNGDYVKKYLPVLKGFPAKYIHAPWTAPESVQKAARCIIGQDYPTPIVDHN 119
>gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
Length = 486
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 189/371 (50%), Gaps = 29/371 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
++ + + GI + +H LF PA+I + G ++Q F P W + L ++
Sbjct: 112 RIYEELNRDGITIKFFNTHLLFEPANIKNQQGN----SFQIF-----TPFWKTC-LTKTI 161
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG-------GESEALKKLRESISD 114
+ P D + ++ ++L +G + + R E AL KL +I
Sbjct: 162 EADLPAPDHIFNGYNQPINSDDLSDWKWGHSQAAWTRKLANHWHLSELAALNKL--AIFL 219
Query: 115 KEWVANFEKPK---GDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
K +A + + PS ++ LSPYL++G +S++ + + +
Sbjct: 220 KNSLAGYNNNRDLIASPSF-----SSQLSPYLRWGQISAKKIFNEVIHTMERDPTIQQDG 274
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
+ + ++ WR+F Y + + P+ + N+ + P+ N+ LL W++ TG+P IDA
Sbjct: 275 NTFLKEIGWREFSYYLLYHHPSMQEVPLNKRFQDFPYENNLSLLEKWQKGTTGFPIIDAG 334
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-C 290
M QL GWM + R VA FL + D+ ++W+ G+ F L+D+D A N +W W++ C
Sbjct: 335 MRQLWLEGWMPNRLRMIVASFLIK-DLLINWQFGQAWFIDTLVDADPANNANSWQWVAGC 393
Query: 291 SSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
+ Y RI++P++ GKK+D G YIR ++P LKD+P +YI++PW P+T+Q II
Sbjct: 394 GTDASPYFRIFNPITQGKKFDSEGKYIRKYVPELKDLPTKYIHQPWEMPITLQEEYNVII 453
Query: 351 GRDYPAPVVSH 361
G+DYP P+V H
Sbjct: 454 GKDYPHPIVDH 464
>gi|423636149|ref|ZP_17611802.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
gi|401276137|gb|EJR82094.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
Length = 476
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 170/322 (52%), Gaps = 29/322 (9%)
Query: 52 WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
W SS LP SLS +SE+ + + + + + P G + KK S
Sbjct: 168 WGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSS 214
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS-- 169
+A + + + P+ + A ++L+PYL FG + + Y L + ++ ++ S
Sbjct: 215 K-----LAFYSEGRDFPN---QNAHSMLAPYLSFGQIPVKLMYHYLIN--KSTERQCSLF 264
Query: 170 --PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
+S + QL+WR+F Y + + P N+ + PW+ ++ELL W+ TGYP+
Sbjct: 265 EKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQRGETGYPF 324
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W W
Sbjct: 325 IDAGMRELWQTGFMHNRARMAVASFLVK-HLLISWQEGAKWFMDTLLDADIANNTMGWQW 383
Query: 288 LSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +A
Sbjct: 384 VAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKA 443
Query: 347 KCIIGRDYPAPVVSHDSASKEC 368
+G YP PVV H +A +
Sbjct: 444 NIKLGHTYPLPVVDHKAARERA 465
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 170/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 119 TKGIEVETFWDQLLHAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPTTLETLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P S L++ + + + N+++ + P
Sbjct: 178 GEKLTETINLPTLENLGFTWQNPLPLTPGEKAASSRLEEFCQGV-----INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|430807586|ref|ZP_19434701.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
gi|429500109|gb|EKZ98493.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
Length = 518
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 6/240 (2%)
Query: 139 LSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMK 198
LS +L+FG +S R + D + + +L+WRDF++ + P K
Sbjct: 268 LSVHLRFGTISIRTLARAAHDAMLRGGAASEGAAVWLSELIWRDFYFMILHHHPRVAEGK 327
Query: 199 GNR----ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
+ I + D AAW +A+TGYP IDA M+Q+R+ G+MH+ R A FL
Sbjct: 328 SFHPEYDALRWIAPATGDRYFAAWCDAQTGYPLIDAAMLQIRQSGYMHNRLRMVTASFLV 387
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPN 313
+ D+ V W +G F L D D A NNG W W + + Q Y RI++PV+ +K+DP
Sbjct: 388 K-DLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDPQ 446
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373
G +IR +LP+L +P Y++ PWTAP + A +G DYP P+V HD A KE + G
Sbjct: 447 GQFIRKYLPMLAALPDRYVHAPWTAPEEVLRAAGVKLGEDYPRPIVQHDVARKETLERYG 506
>gi|422020244|ref|ZP_16366784.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
gi|414101839|gb|EKT63436.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
Length = 477
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 149/279 (53%), Gaps = 22/279 (7%)
Query: 93 ELSP-FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
E+SP F GE AL KLR+ S++ V ++++ + P+ T+ LSPYL G LS R
Sbjct: 196 EISPQFTAGEHAALAKLRQFCSER--VQDYQRDRDIPAI---DGTSQLSPYLALGVLSPR 250
Query: 152 YFYQCLTDVY----QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQI 206
QC+ + Q S S + +L+WR+F+ + P R + + I
Sbjct: 251 ---QCVNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQPFIEWTQHI 307
Query: 207 PWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGR 266
W+ D+ L AW+ +TGYP +DA M QL + GWMH+ R VA FL + D+ V W KG
Sbjct: 308 QWNPDETALTAWKNGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVK-DLLVDWRKGE 366
Query: 267 DVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
F LID A NNG W W + + + RI++P + GKK+DP G +IR +LP L+
Sbjct: 367 HYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIREWLPELR 426
Query: 326 DMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
D+P+ +I+EP T + Q + +YP P+V H A
Sbjct: 427 DVPETFIHEPHTWAESHQ------VSLNYPTPIVDHKQA 459
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 189/393 (48%), Gaps = 33/393 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVS 60
+V TAGI L +P D I G P Y F K QP P
Sbjct: 112 QVAAALKTAGIRAVQLWDQLLHSP-DQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTE 170
Query: 61 LSSLPP--VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
L L P + + +SE+PT+++LG+ G + P GE+ A+ +L+E D+ +
Sbjct: 171 LVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEP---GETAAIARLQE-FCDRA-I 225
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ- 177
A+++ + P+ + T+ LSP LKFG + R +Q + + + + V Q
Sbjct: 226 ADYDPQRNFPA---EAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQ 282
Query: 178 -LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
L WR+F+ + P+ + +Q PW N + L AW +A+TGYP +DA M QL
Sbjct: 283 ELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLT 342
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GWMH+ R VA FLT+ D+ + W +G F + L+D D A NNG W W + S +
Sbjct: 343 ETGWMHNRCRMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPK 401
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDM-PKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
RI++P S KK+D YI+ +LP L+ + PK+ I T I R YP
Sbjct: 402 PLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITP----------IERRGYP 451
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSE 388
AP+V+H+ K+ K AL +L ++E
Sbjct: 452 APIVNHNLRQKQFK-------ALYNQLKAAIAE 477
>gi|434375590|ref|YP_006610234.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874147|gb|AFQ26314.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 190/381 (49%), Gaps = 36/381 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPGIIKKKDNTEYKVFTPFYNAFQKQVIPKPIRKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W +S LP SLS +SE+ + + + + + P G +A KK
Sbjct: 167 KWGNS-LPASLS------------VSELHLLPTIPWTSHMEAIWDPTEEGAYKAFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHT 168
S +A++ + + P+ + ++L+PYL FG +S + Y L + +
Sbjct: 214 SK-----LASYSEGRDFPN---QNTHSMLAPYLSFGQISVSWMYHYLINKSTERQCSLFE 265
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
S + QL+WR+F Y + + P N+ + PW ++ELL W++ +TGYP+I
Sbjct: 266 EQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFI 325
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W W+
Sbjct: 326 DAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWV 384
Query: 289 SCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
+ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 385 AGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKVN 444
Query: 348 CIIGRDYPAPVVSHDSASKEC 368
+G YP PVV H +A +
Sbjct: 445 IKLGNAYPLPVVDHKAARERA 465
>gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
255-15]
gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
255-15]
Length = 451
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 145/275 (52%), Gaps = 21/275 (7%)
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
+ F GE A K+LR + + ++ +E+ + P+ T+++S YL+ G + R +
Sbjct: 192 TDFAVGEETARKRLRSFLKNN--LSAYEEQRDLPAV---DGTSLMSRYLRTGEIGIRTIF 246
Query: 155 QCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDEL 214
+ + K T + +L+WR+F+YT+ P R+ N +I W D++
Sbjct: 247 DAVQQEQDSKGKQT-----YLTELIWREFYYTILMHYPESKRLPVNEQYTKIEWETDEKG 301
Query: 215 LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLI 274
AW E +TGYP +DA M QL GWMH+ R VA FLT+ D+ V W+KG F + L+
Sbjct: 302 FKAWAEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTK-DLLVDWQKGERYFQQKLV 360
Query: 275 DSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
D + A N G W W S + Y R+++P + KK+D +G +IR +LP LKD+PK I+
Sbjct: 361 DYEAASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDKDGTFIRTYLPELKDLPKTSIH 420
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
EP T Q R DYP P+V HD A K
Sbjct: 421 EP-----TEQQRKDY----DYPMPIVEHDMARKRA 446
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 170/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 119 TKGIEVETFWDQLLHAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPTTLENLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE A +L E + N+++ + P
Sbjct: 178 GDKLTETINLPTLENLGFTWQNPLPLTP---GEKAAHSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAEGAYRKEFRHFPWQDNEEHFQAWCQGQTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354552505|ref|ZP_08971813.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353555827|gb|EHC25215.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
Length = 491
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 172/343 (50%), Gaps = 14/343 (4%)
Query: 37 PLTYQSFLKLAGQPLWASSPL--PVSLSSLPPVGDVGYFEISEVPTVEELGYK--GYGQE 92
P + SF K + + L P+ L P + E+ ++PT+EELG + Y
Sbjct: 157 PEVFTSFRKKVEKSSTVNPTLITPIKLLPFPNI------ELGKIPTLEELGLEKPDYHSR 210
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+ F+GGE+ +K+L+E ++ + +++ + ++ SP+L GCLS RY
Sbjct: 211 GMLNFKGGETGGIKRLKEYFWERNCLKEYKETRNGMLG--ADYSSKFSPWLAQGCLSPRY 268
Query: 153 FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
Y+ + Y++ + + L+ +LLWRD+F + N + IPW D
Sbjct: 269 IYEEVQK-YEDARVKNNSTYWLIFELLWRDYFRFICAKHGNKIFYESGLQGLDIPWKEDK 327
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
E W+E++TGYP +DA M ++ G+M + R VA FLT+ ++ ++W G + F+ L
Sbjct: 328 ERFKLWQESKTGYPLVDANMREIAATGFMSNRGRQNVASFLTK-NLGINWIMGAEWFESL 386
Query: 273 LIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
LID D N GNW + + + R ++ K YDP G+Y+RH+LP LK +P + I
Sbjct: 387 LIDYDVCSNYGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGDYLRHWLPELKMIPGDKI 446
Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
+EPW Q R IG DYP PVV + K ++ A
Sbjct: 447 HEPWKLSQDEQKRYNVRIGVDYPRPVVDFFKSVKANEKVYNSA 489
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 170/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 119 TKGIEVETFWDQLLHAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPKTLENLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE A +L E + N+++ + P
Sbjct: 178 GEKLAETINLPTLENLGFTWQNPLPLAP---GEKAARSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKDSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|410089563|ref|ZP_11286177.1| deoxyribodipyrimidine photolyase [Pseudomonas viridiflava
UASWS0038]
gi|409763098|gb|EKN48083.1| deoxyribodipyrimidine photolyase [Pseudomonas viridiflava
UASWS0038]
Length = 482
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 184/384 (47%), Gaps = 34/384 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP----LP 58
V+ AG+ S + LF P ++ K G + + F K+ L + P P
Sbjct: 113 VQKTLEDAGVHFQSHLDQLLFKPGSVLTKTGNYFQV-FSQFKKVCYSRLHEAMPRTVRTP 171
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
SLP D +P + G+ + + + GE EA ++L E D+
Sbjct: 172 KPQDSLPTKSDA-------IPEAVK-GFSAPSEALRNLWPAGEDEAHRRLSEFTDDQ--- 220
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQ 177
++ K + D A KP T+ LS YL G +S R + LT + + + V+ + +
Sbjct: 221 IHYYKTERDLPA--KPGTSQLSAYLAAGVVSPRQCLHAALTSNHGEFETGSEGSVTWINE 278
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ G P R + R + + W N E L AW+EARTG P IDA M QL
Sbjct: 279 LLWREFYKHTLVGYPRVSRHRAFRPETEALQWRNAPEELLAWQEARTGLPIIDAAMRQLL 338
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFY 295
+ GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 339 ETGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSV 397
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDY 354
Y RI++P+S +++DP G +++ +LP L D+ K+ ++ P A + G DY
Sbjct: 398 PYFRIFNPLSQSERFDPEGVFLKRWLPELADLNKKQVHNP--------ASAGGLFGVADY 449
Query: 355 PAPVVSHDSASKECKRKLGEAYAL 378
PAP+V SK R L AL
Sbjct: 450 PAPIV---DLSKSRARALAAFKAL 470
>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559511|ref|YP_006602235.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
gi|423359850|ref|ZP_17337353.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083011|gb|EJP91275.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|401788163|gb|AFQ14202.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
Length = 476
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 190/381 (49%), Gaps = 36/381 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHT 168
S +A++ + + P+ + A ++L+PYL FG +S + Y L + +
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFE 265
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP+I
Sbjct: 266 KQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFI 325
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M +L + G+MH+ R VA FL + + + W++G F L+D+D A N W W+
Sbjct: 326 DAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWV 384
Query: 289 SCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
+ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +A
Sbjct: 385 AGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKAN 444
Query: 348 CIIGRDYPAPVVSHDSASKEC 368
+G YP PVV H +A +
Sbjct: 445 IKLGNTYPLPVVDHKAARERA 465
>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 476
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLIYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N++ELL W++ TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 156/303 (51%), Gaps = 18/303 (5%)
Query: 75 ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKP 134
I ++PT ++LGY L+P GE+ A ++L+E K + N+++ + P+
Sbjct: 187 IIDLPTAKDLGYLWENPLMLNP---GETAAKERLQEFC--KTSINNYQEQRDLPAI---D 238
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYTVAFGTP 192
T+ LS LKFG + R +Q ++Y+N + Q L WR+F+ + P
Sbjct: 239 GTSRLSAALKFGAIGIRTVWQATLELYENSRSDEVRESIQTWQQELAWREFYQHCMYFFP 298
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ ++ PW ND++L AW E +TGYP +DA M QL + GWMH+ R VA F
Sbjct: 299 ELADGPYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 358
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDP 312
LT+ D+ ++W+ G F + L D D + NNG W W + S + RI++P S +KYDP
Sbjct: 359 LTK-DLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKPLRIFNPASQSQKYDP 417
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
+G YIR ++P LK + EY+ T + +C YP P+V H E K++
Sbjct: 418 DGEYIRQWIPELKSLDTEYLV---TGKIPTSELRQC----GYPEPIVDHKKRQAEFKQRY 470
Query: 373 GEA 375
E
Sbjct: 471 KEV 473
>gi|434376106|ref|YP_006610750.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874663|gb|AFQ26830.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIELGNTYPLPVVDHKAARERA 465
>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase [Bacillus cereus G9842]
gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
G9842]
Length = 476
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGNTYPLPVVDHKAARERA 465
>gi|379136508|gb|AFC93483.1| cryptochrome 1, partial [Gadus morhua]
Length = 109
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 89/109 (81%)
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
KKH++PPVSL GQLLWR+FFYT + G PNFDRM N +C QI W E L+AW+EARTG
Sbjct: 1 KKHSAPPVSLHGQLLWREFFYTASVGVPNFDRMLDNPVCTQIDWDTXPEYLSAWKEARTG 60
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
+P+IDAIM QLR+ GW+HHLARH VACFLTRGD+++ WE+G+ VF+ LL
Sbjct: 61 FPFIDAIMTQLRREGWIHHLARHAVACFLTRGDLWISWEEGKKVFEGLL 109
>gi|414085438|ref|YP_006994149.1| FAD binding domain of DNA photolyase family protein [Carnobacterium
maltaromaticum LMA28]
gi|412999025|emb|CCO12834.1| FAD binding domain of DNA photolyase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 362
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 145/273 (53%), Gaps = 17/273 (6%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
G +A K+LR+ IS + +++ + P+ + T+ LS +L+ G LS R +
Sbjct: 94 GALKARKRLRQFISSG--IEQYDQTRDFPA---QKGTSRLSQFLRTGELSIR-------E 141
Query: 160 VYQNVKKHTSPPV---SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLA 216
VY +K + + + +L WRDF+ + F P ++ + + W++D++LL
Sbjct: 142 VYHRIKAEAPDSIGKETYLKELCWRDFYNMIYFENPQQQVLEIKEQYRNLQWNSDEQLLQ 201
Query: 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS 276
AW+ +TGYP +DA M QL + GWMH+ R A FL + D+ + W G F LID
Sbjct: 202 AWKTGQTGYPLVDAAMRQLNQTGWMHNRLRMIAASFLVK-DLLMDWRLGEAYFAEKLIDY 260
Query: 277 DWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
D A N G W W S + Y RI++P + +++D G++I ++P LK +P Y++EP
Sbjct: 261 DAASNIGGWQWAASTGTDAVPYFRIFNPTTQSQRFDEAGDFIYKYVPELKGIPHAYLHEP 320
Query: 336 WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
PL IQ + +IG DYP P+V H K+
Sbjct: 321 SKMPLNIQQEKQIVIGEDYPQPIVQHKLMRKKA 353
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 170/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q A +L L
Sbjct: 119 TKGIEVETFWDQLLQAPGQVLTLSKS-PYTVYTPFWKNWSQLAKARPKTLENLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE AL +L E + N+++ + P
Sbjct: 178 GEKLTETINLPTLENLGFTWQNPLPLTP---GEKAALSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGTIGIRTIWTATLELLENCRAEEAKNSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 170/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 119 TKGIEVETFWDQLLQAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPKTLENLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE A +L E + N+++ + P
Sbjct: 178 GEKLAETINLPTLENLGFTWQNPLPLAP---GEKAARSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 478
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 109 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSI 168
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 169 KWGSS-LPASLS------------VSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFS 215
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 216 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSL 265
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 266 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYP 325
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A N W
Sbjct: 326 FIDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 384
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 385 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQK 444
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 445 ANIELGNTYPLPVVDHKAARERA 467
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 182/374 (48%), Gaps = 26/374 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVS 60
+V TAGI L +P D I G P Y F K QP P
Sbjct: 111 QVAAALKTAGIRAVQLWDQLLHSP-DQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTE 169
Query: 61 LSSLPP--VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
L L P + + +SE+PT+++LG+ G + P GE+ A+ +L+E D+ +
Sbjct: 170 LVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEP---GETAAIARLQE-FCDRA-I 224
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ- 177
A+++ + P+ + T+ LSP LKFG + R +Q + + + + V Q
Sbjct: 225 ADYDPQRNFPA---EAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQ 281
Query: 178 -LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
L WR+F+ + P+ + +Q PW N + L AW +A+TGYP +DA M QL
Sbjct: 282 ELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLT 341
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GWMH+ R VA FLT+ D+ + W +G F + L+D D A NNG W W + S +
Sbjct: 342 ETGWMHNRCRMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPK 400
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDM-PKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
RI++P S KK+D YI+ +LP L+ + PK+ I T I R YP
Sbjct: 401 PLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITP----------IERRGYP 450
Query: 356 APVVSHDSASKECK 369
AP+V+H+ K+ K
Sbjct: 451 APIVNHNLRQKQFK 464
>gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
Length = 477
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 131/239 (54%), Gaps = 4/239 (1%)
Query: 133 KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP 192
+P T+ LSP+L FG +S R + + D Q + + +L WR+F Y + + P
Sbjct: 232 QPGTSRLSPHLHFGEISIRAVWHAVRDAQQMQPAAADALDTFLAELGWREFAYHLLWQQP 291
Query: 193 NFDRMKGNRICKQIPWSNDDE--LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
R + + PW D + LL AWR TG P +DA M +L GWMH+ R V
Sbjct: 292 ELHRTPIDERFSRFPWREDPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNRVRMVVG 351
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKK 309
FL + ++ + W+ G F L+D D A N+ W W+S C + Y RI++PV G++
Sbjct: 352 SFLVK-NLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPVRQGER 410
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+DP+G+Y+RH++P + +PK +I++PW AP + R +GRDYP P+V ++ KE
Sbjct: 411 FDPDGDYVRHWVPEVAGLPKSHIHQPWAAPADARARCGLHLGRDYPEPLVDLATSRKEA 469
>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
Length = 480
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 151/284 (53%), Gaps = 13/284 (4%)
Query: 86 YKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKF 145
+ G QE +P GE+ A +L + + K V+++ + P + T+ LSP+L F
Sbjct: 198 WSGGLQENWTP---GEAAAHGRLGQFL--KAAVSDYSDRRDLPG---QSGTSRLSPHLHF 249
Query: 146 GCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQ 205
G +S R + V Q+ T + + ++ WR+F Y + + P+
Sbjct: 250 GEISPRQVWHA---VKQSDHARTGGADTYLSEIAWREFSYNLLYHFPDLPEANFQSKFDA 306
Query: 206 IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
W ++ L AW++ +TGYP +DA M +L GWMH+ R VA FL + D+F+HW +G
Sbjct: 307 FEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFLIK-DLFIHWRRG 365
Query: 266 RDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
D F L+D+D A N +W W + S + Y R+++PV +K+DP G+Y+R ++P L
Sbjct: 366 EDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPKGDYLRKWIPEL 425
Query: 325 KDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
D+P + I+ PWTA ++ +RA +G YP P+V H A K
Sbjct: 426 ADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRA 469
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 169/362 (46%), Gaps = 19/362 (5%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 121 GIEVETFWDQLLHAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPTTLENLQGLDENEGD 179
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
E +PT+E LG+ L+P GE A +L E + N+++ + P+
Sbjct: 180 KLTETINLPTLENLGFTWQNPLPLTP---GEKAAHSRLEEFCQGV--INNYQEDRNFPAF 234
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYTVA 188
T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 235 ---DGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKDSIITWQQELAWREFYQHCL 291
Query: 189 FGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHC 248
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 292 YFFPELAEGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMI 351
Query: 249 VACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGK 308
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S +
Sbjct: 352 VASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQ 410
Query: 309 KYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ KE
Sbjct: 411 KFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQKEF 463
Query: 369 KR 370
KR
Sbjct: 464 KR 465
>gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
Length = 478
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 171/337 (50%), Gaps = 14/337 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V Y S I S + LF P ++ ++GG + Y F K+ + L ++ P V+
Sbjct: 113 RVSAYLSQQAIAWHSHLDQILFKPGSVLTRSGGYFQV-YSQFRKVCYERLHSALPALVTQ 171
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
DV S++ G+ + + GE AL++L E +D++ VA +
Sbjct: 172 PKAQTPMDVK----SDIIPDSVKGFATPSESLRLLWPAGEQAALQRL-ERFADEQ-VAFY 225
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G LS R + L+ ++ + +LLW
Sbjct: 226 KDERDFPA---KPGTSQLSAYLAAGILSPRQCLHAALSANRGEFDSGNQGVITWINELLW 282
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ + G P R + R + +PW N E LAAW+E RTG P IDA M QL + G
Sbjct: 283 REFYKHILVGYPRVSRHRAFRPETEAVPWRNAPEELAAWQEGRTGLPIIDAAMRQLLETG 342
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + Y
Sbjct: 343 WMHNRLRMIVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYF 401
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
RI++P+S +K+DP+G +IR ++P L + K I++P
Sbjct: 402 RIFNPISQSQKFDPDGQFIRQWVPELAGLNKRDIHDP 438
>gi|423436667|ref|ZP_17413648.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
gi|401122403|gb|EJQ30190.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
Length = 476
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 195/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMILEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + A ++L+PYL FG +S + + L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMFHYLIN--KSTERQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW ++ELL+ W++ TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKEEELLSVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
+ +G YP P+V H +A +
Sbjct: 443 SNIKLGNTYPYPIVDHKAARERA 465
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 185/382 (48%), Gaps = 25/382 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL-----AGQPLWASSP 56
KVK + + IE S +H L P + K GG P + F K PL A
Sbjct: 113 KVKQHLADNDIETASFKAHLLHEPWTVETKQGG-PYKVFTPFWKAIKNRAVDTPLAAPDA 171
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
LP S +G ++ + ++G+ +E SP GE A ++L ++D
Sbjct: 172 LPEVWSR------IGSESLASLELRPKIGWDRGIRETWSP---GEDGAHERLETFLADA- 221
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT---DVYQNVKKHTSPPVS 173
+ +++ + +P+ +P T+ LSP+L +G + R + D ++ +K + S
Sbjct: 222 -LKTYDEARDEPA---RPGTSYLSPHLHWGEIGPRQIVHRVEEWLDDHREIKTLRTQADS 277
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
+ ++ WR+F + V + P + K PWS DD+ L W++ +TG P +DA M
Sbjct: 278 FLSEIGWREFAHHVLYHFPETPDEPLDARFKDFPWSGDDDALKRWQQGQTGIPMVDAGMR 337
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSS 292
+L G+MH+ R VA FLT+ ++ V W+ G F L+D+D A N W W + C +
Sbjct: 338 ELWATGYMHNRLRMTVASFLTK-NLRVAWQHGERWFWGTLVDADLANNTLGWQWAAGCGA 396
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
+ RI++P G+++D G Y+R ++P L D+ +I+EPW AP A ++G
Sbjct: 397 DAAPFFRIFNPARQGERFDAKGEYVRRWVPELADLDNRHIHEPWNAPANALKAANIVLGD 456
Query: 353 DYPAPVVSHDSASKECKRKLGE 374
DYP P+V ++ +E E
Sbjct: 457 DYPEPIVDLKASRREALAAFDE 478
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 171/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 119 TKGIEVETFWDQLLHAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPKTLENLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE A +L E + N+++ + P
Sbjct: 178 GEKLTETINLPTLENLGFTWQNPLPLTP---GEKAAHSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN--VKKHTSPPVSLVGQLLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N ++ ++ +L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 174/345 (50%), Gaps = 17/345 (4%)
Query: 29 IQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS--LSSLPPVGDVGYFEISEVPTVEELGY 86
I K G P + ++ K + + +S+ V+ +S PV + ++ +P++
Sbjct: 135 ITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVESLSVSDLDLLPSI----- 189
Query: 87 KGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFG 146
+ + S + E A+ + + +K + ++EK + P+ L + LSPY G
Sbjct: 190 -PWDETIKSTWEATEKGAIDVFKTFLKNK--LLHYEKGRDFPAEAL---NSFLSPYFATG 243
Query: 147 CLSSRYFYQCLTDVYQNVKKHTSPPVS--LVGQLLWRDFFYTVAFGTPNFDRMKGNRICK 204
LS+R Y L + V + + QL+WRDF Y + + P+ N K
Sbjct: 244 QLSARVLYHYLRTKAEKVSSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTTTEPLNEKFK 303
Query: 205 QIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEK 264
Q W++ +E L AW+ +TGYP +DA M +L + G+MH+ R A FL + + +HW+
Sbjct: 304 QFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMIAASFLVK-HLLIHWKH 362
Query: 265 GRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPV 323
G + F L+D+D A N W W++ S + Y RI++P++ +K+D G YI+ +LP
Sbjct: 363 GANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEGEYIKKWLPE 422
Query: 324 LKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
LK +P YI++PW AP + +A + + YP P+V H +A +
Sbjct: 423 LKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARERA 467
>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|423352873|ref|ZP_17330500.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|423373016|ref|ZP_17350356.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|423567933|ref|ZP_17544180.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|401090879|gb|EJP99030.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|401097348|gb|EJQ05371.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|401211272|gb|EJR18020.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
Length = 476
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 214 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSNEKQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N+ +LL W++ +TGYP
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 443 ANIKLGDTYPLPVVDHKAARERA 465
>gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
Length = 504
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 141/266 (53%), Gaps = 7/266 (2%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+ AL L + + V E+ + D + T+ LSP+L FG + R +
Sbjct: 226 GETAALSHLADFLDGPVGVYATERDRPD-----RHGTSTLSPHLAFGEIGPRQVWHAARH 280
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ + + + ++ WR+F Y + P + PW D L AWR
Sbjct: 281 AAEARPELAAGIDFFLREVGWREFQYHLLHHAPELPERPLDPRFADFPWREDAAGLQAWR 340
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
RTGYP +DA M QL + GWMH+ R VA FL + D+ + W++G F L+D+D A
Sbjct: 341 RGRTGYPIVDAGMRQLWETGWMHNRVRMIVASFLVK-DLLLPWQEGERWFWDTLVDADLA 399
Query: 280 INNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N GNW W++ C + + R+++PV G+K+DP+G+Y+R ++P L +P +I++PWTA
Sbjct: 400 QNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFDPDGDYVRRYVPELDRLPPRWIHQPWTA 459
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSA 364
P I +A +G DYP P++ H +A
Sbjct: 460 PTEILRQAGIRLGADYPRPILDHGAA 485
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 171/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 119 TKGIEVETFWDQLLHAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPKTLENLQGLEENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE A +L E + N+++ + P
Sbjct: 178 GEKLTETINLPTLENLGFTWQNPLPLAP---GEKAAHSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN--VKKHTSPPVSLVGQLLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N ++ ++ +L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
Length = 481
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 180/374 (48%), Gaps = 21/374 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V+ + G V + H +F A+ ++ G P Y ++ A++P + +
Sbjct: 110 EVQQRLAQQGRTVRTFKDHVVFE-AEEVRGLSGDPFQRYSAYRDRWWTKWRAAAPPLLGI 168
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD--KEWVA 119
S PP G + + P+V +LGY+ + P GE A +L+ + ++V
Sbjct: 169 PSFPPAGKASTPDSRKWPSVTDLGYESVPMW-IEP---GEQAAHARLQWFLRGPVHQYVT 224
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYF-YQCLTDVYQNVKKHTSPPVSLVGQL 178
P D T+ LSP+L+FG +S+R + L + + + + V +L
Sbjct: 225 GRNLPAID-------GTSKLSPHLRFGTVSARTLVHAALNALAKGGAVSRADVFTWVDEL 277
Query: 179 LWRDFFYTVAFGTPNFD----RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+WR+FF V P+ + K + D L AAW + TGYP +DA M Q
Sbjct: 278 VWREFFQQVLAAFPHVAHGPFKAKPGLPEPRPAGPERDRLFAAWSQGLTGYPIVDAGMRQ 337
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSF 293
L + GWMH+ R VA FL + D+ V W+ G F L+D D A NNGNW W S +
Sbjct: 338 LNQTGWMHNRVRMVVASFLVK-DLRVDWQSGERYFMERLVDGDLAANNGNWQWCASTGTD 396
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Q RI++P +K+D G Y+R ++P LK +P ++I+EP P Q +A C IG D
Sbjct: 397 AMQGYRIFNPRIQSEKFDAEGEYLRRYVPELKHVPTKWIHEPHLMPPLEQVQAGCRIGSD 456
Query: 354 YPAPVVSHDSASKE 367
YP P+V H A +E
Sbjct: 457 YPEPIVDHRQARQE 470
>gi|375285088|ref|YP_005105527.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
gi|358353615|dbj|BAL18787.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
Length = 469
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 194/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 100 KMKMMLEDKGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSI 159
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 160 KWGSS-LPASLS------------VSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFS 206
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P+ + A ++L+PYL FG +S + Y L + ++ +K S
Sbjct: 207 SK-----LVSYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSNEKQCSL 256
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + Q +WR+F Y + + P N+ + PW+N+ +LL W++ +TGYP
Sbjct: 257 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYP 316
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 317 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 375
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D +G YIR ++P L+DMP +YI++PW AP I +
Sbjct: 376 WVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQK 435
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP PVV H +A +
Sbjct: 436 ANIKLGDTYPLPVVDHKAARERA 458
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 182/376 (48%), Gaps = 34/376 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSL-----P 65
GI+ + L P +I+ K+G +P Y F K L + + +L +L
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSG-EPYKVYTPFWK--NWELQSKDSITNNLENLEGLTQT 177
Query: 66 PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLR----ESISDKEWVANF 121
+ +I ++PTV+ELGY+ LSP GE+ A ++L +I++ + NF
Sbjct: 178 ELEQAKTVKIIDLPTVKELGYRWDYPLILSP---GETAAAERLDYFCDAAINEYQEQRNF 234
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT--SPPVSLVGQLL 179
+G T+ LSP LKFG + R +Q +N + V+ +L
Sbjct: 235 PAIEG---------TSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELA 285
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+F+ + P + PW N++ L AW + +TGYP +DA M QL + G
Sbjct: 286 WREFYQHCLYFFPELAEGPYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETG 345
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
WMH+ R VA FLT+ D+ ++W+ G F + LID D A NNG W W + S + R
Sbjct: 346 WMHNRCRMIVASFLTK-DLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKPLR 404
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
I++P S +K+DP+ +YIR +LP L+ + E + +PL + YP P+V
Sbjct: 405 IFNPASQAQKFDPDADYIRQWLPELRSLDTEVLVTGKISPLD-------CLSCGYPQPIV 457
Query: 360 SHDSASKECKRKLGEA 375
+H+ +E KR+ +
Sbjct: 458 NHNQQQREFKRRYSQV 473
>gi|424890665|ref|ZP_18314264.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393172883|gb|EJC72928.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 482
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 189/378 (50%), Gaps = 30/378 (7%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF---LKLAGQPLW-ASSP 56
+++K IE S L++P+ ++ GG P Y F L+ AG+P +P
Sbjct: 114 IRIKHELQKQAIEARSFGGQLLYDPSRLMT-GGGTPYRVYTPFWRALEGAGEPERPVEAP 172
Query: 57 LPVSLSS-LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
+ L++ LP + +++ +PT + + ++ + GE A +KLR + D
Sbjct: 173 AKLRLAAQLPKSERLESWKL--LPTKPD-----WARDFGDLWTPGEQGAREKLRSFVEDG 225
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+ +++ + P+ K AT++LSP+L G +S + + + + + +
Sbjct: 226 --LDGYKENRDYPA---KQATSLLSPHLALGEISPARIWDATRGLSKRMP--AADILHFR 278
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
++ WR+F Y + F P N W NDD+ AAWR TGYP +DA M QL
Sbjct: 279 KEIAWREFSYHLLFHFPRLASDNWNARFDGFKWRNDDDDFAAWRRGMTGYPIVDAGMRQL 338
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----C 290
+ GWMH+ R VA FL + D+ V W +G F L+D+D A N +W W++
Sbjct: 339 WRHGWMHNRVRMIVASFLIK-DLMVDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADA 397
Query: 291 SSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
S FF RI++PV G+ +DP G+Y+R +LP L+++ YI+ P+ AP ++ A I+
Sbjct: 398 SPFF----RIFNPVLQGQTFDPRGDYVRTYLPELRELAANYIHRPFEAPESVLDSAGIIL 453
Query: 351 GRDYPAPVVSHDSASKEC 368
G+ YP P+V H SA
Sbjct: 454 GQTYPRPIVDHASARNRA 471
>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
Length = 476
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 171/322 (53%), Gaps = 29/322 (9%)
Query: 52 WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
W SS LP SLS +SE+ + + + + + P G + KK S
Sbjct: 168 WGSS-LPASLS------------VSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSS 214
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS-- 169
+A++ + + P+ + A ++L+PYL FG +S + Y L + ++ ++ S
Sbjct: 215 K-----LASYSEGRDFPN---QNAHSMLAPYLSFGQISVKLMYHYLIN--KSTERQCSLF 264
Query: 170 --PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP+
Sbjct: 265 EKQVNSFIRQLIWREFSYYLLYHYPFAVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPF 324
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDA M +L + G+MH+ R VA FL + + + W++G F L+D+D A N W W
Sbjct: 325 IDAGMRELWQTGFMHNRTRMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNIMGWQW 383
Query: 288 LSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +A
Sbjct: 384 VAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKA 443
Query: 347 KCIIGRDYPAPVVSHDSASKEC 368
+G YP PVV H +A +
Sbjct: 444 NIKLGNAYPLPVVDHKAARERA 465
>gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
Length = 484
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 19/374 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA--GQPLWASSPLPVS 60
V + S AG+ V + H L P + + GG P T+ SF++ A G+ + + P+P
Sbjct: 115 VARHLSAAGVTVERTLGHLLHAPGSV-RGTGGGLPRTFSSFMRAAVKGRDIGRTLPVPRL 173
Query: 61 LSSLP-PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
+ P P D+ + + PT + + G + P GE+ A +L ++D +A
Sbjct: 174 NGAAPLPCDDLEEWALE--PTQPD--WAGGLRTTWHP---GEAAARARLEAFLADG--LA 224
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
+ + + P + + LSPYL+FG +S R +L
Sbjct: 225 GYGEGRDRPD---QTHVSRLSPYLRFGEISPRQVLLAALAAGDAGTVPAKDVQKFEAELY 281
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+F + + F P+ R PW L W++ RTGYP +DA M QL + G
Sbjct: 282 WREFSHHLLFAVPDLARRNLQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYN 298
WMH+ R VA FL + + + W+ G F L+D+D A N +W W++ S Y
Sbjct: 342 WMHNRVRMIVASFLCK-HLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++PV G+K+DP G Y+R ++P LKD+P I++PW+APL + TR +GRDYP P+
Sbjct: 401 RIFNPVLQGEKFDPEGTYVRTYVPELKDVPARLIHQPWSAPLEL-TRYGVRLGRDYPEPM 459
Query: 359 VSHDSASKECKRKL 372
V H +A R
Sbjct: 460 VEHGAARDRALRAF 473
>gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB102]
gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102]
Length = 476
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 138/235 (58%), Gaps = 8/235 (3%)
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFG 190
A ++L+PYL FG +S ++ Y L + ++ ++ S S + Q +WR+F Y + +
Sbjct: 230 AHSMLAPYLSFGQISVKWMYHYLIN--KSTERQCSLFEKQVNSFIRQFIWREFSYYLLYH 287
Query: 191 TPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
P N+ + PW+ +DELL W++ TGYP+IDA M +L + G+MH+ AR VA
Sbjct: 288 YPFTVYKPLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKK 309
FL + + + W++G F L+ +D A N W W++ S Y RI++P++ G+K
Sbjct: 348 SFLVK-HLLIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+D +G YIR ++P L+DMP +YI++PW AP I +A IG YP PVV H +A
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPVVDHKAA 461
>gi|389581360|ref|ZP_10171387.1| deoxyribodipyrimidine photolyase [Desulfobacter postgatei 2ac9]
gi|389402995|gb|EIM65217.1| deoxyribodipyrimidine photolyase [Desulfobacter postgatei 2ac9]
Length = 471
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 133/236 (56%), Gaps = 23/236 (9%)
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
T+ LSPYL G +SSR CL V + + + +LLWRDF++ + F P+
Sbjct: 241 GTSGLSPYLAIGAVSSR---MCLAGVIS--AEQSRGGTTWKNELLWRDFYHHLMFFIPDL 295
Query: 195 DRMK-----GNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCV 249
R G+R+ W ++ ELLAAW+ +TGYP +DA M QL + GWMH+ R V
Sbjct: 296 SRQACFHAWGDRLL----WDDNPELLAAWQAGKTGYPIVDAAMRQLNQTGWMHNRLRMIV 351
Query: 250 ACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGK 308
A FLT+ D+ + W G+ F R L+D D+ NNG W W + + Q Y RI++PVS GK
Sbjct: 352 ASFLTK-DLHIDWRHGQAYFMRHLVDGDFPANNGGWQWSASTGCDAQPYFRIFNPVSQGK 410
Query: 309 KYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
K+DP G ++R ++P L+ +P Y++ PWT + Q+ A YP P+V H A
Sbjct: 411 KFDPGGRFVRAWIPELESVPDRYVHCPWTWKGSTQSSA-------YPLPIVDHAKA 459
>gi|402556671|ref|YP_006597942.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
gi|401797881|gb|AFQ11740.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
Length = 476
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 140/237 (59%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S + + L + ++ +K S S + Q +WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLIN--KSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW+N++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+G YIR ++P L+DMP +YI++PW AP I +A +G YP PVV H +A +
Sbjct: 409 KDGEYIRKWIPELRDMPNKYIHKPWEAPEHILQKANIQLGNTYPLPVVDHKAARERA 465
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 169/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q A +L L
Sbjct: 119 TKGIEVETFWDQLLQAPGQVLTLSKS-PYTVYTPFWKNWSQLAKARPTTLENLQGLDKNE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P + L++ + + + N+++ + P
Sbjct: 178 GEKLTETINLPTLENLGFTWQNPLPLTPGEKAANSTLEEFCQGV-----INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AV---DGTSRLSAALKFGTIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|433461813|ref|ZP_20419414.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
gi|432189636|gb|ELK46722.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
Length = 481
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 188/374 (50%), Gaps = 45/374 (12%)
Query: 20 HTLFNPADI---IQKNGGKPPLTYQSF---LKLAGQPL--WASSPLPVSLSSLP-PVGDV 70
H L+ P D+ IQ+ P T+ F L+ +G + + P P + LP P GD+
Sbjct: 133 HNLYLPDDLPFSIQE----LPDTFSQFRKRLEKSGTSVRKAIAPPAPEDQAELPVPEGDI 188
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
PT+E LG+ +E + GG SEA K+L + I K+ + +++ +
Sbjct: 189 --------PTLETLGFDP--ADEAPRYPGGSSEARKRLIDYIFTKDRLKIYKQTRN--GM 236
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFG 190
+ ++ SPYL GCLS R Y+ + Y+ L +LLWRD+F+ V
Sbjct: 237 LKEDDSSKFSPYLANGCLSPRVVYEQIQ-AYERTNGANESTYMLYFELLWRDYFHLV--- 292
Query: 191 TPNFDRMKGNRI-------CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
R G+RI K IPW D++LL AW + +TGYP +DA M +L++ G++ +
Sbjct: 293 ----HRKYGDRIFYRSGLSGKAIPWERDEQLLQAWIDGKTGYPLVDAGMRELKETGFLSN 348
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
R VA F T+ ++ + W G F+ L+D D + N GNWL+++ R ++
Sbjct: 349 RGRQNVASFFTK-NLGLDWRIGARWFESQLVDYDVSSNYGNWLYIAGVGNDAVPFRAFNV 407
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
K YDP+G+Y+RH+LP L +P ++I++P + Q + ++G DYP PVV
Sbjct: 408 EKQAKDYDPDGSYLRHWLPELAALPADWIHQPREMGMIEQQQYGIVLGEDYPLPVVD--- 464
Query: 364 ASKECKRKLGEAYA 377
E RK EA+A
Sbjct: 465 -LYESMRKRKEAFA 477
>gi|337281072|ref|YP_004620544.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
[Ramlibacter tataouinensis TTB310]
gi|334732149|gb|AEG94525.1| Candidate deoxyribodipyrimidine photolyase (photoreactivating
enzyme) [Ramlibacter tataouinensis TTB310]
Length = 497
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 185/384 (48%), Gaps = 32/384 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY----QSFLKLAGQPLWASSPLP 58
V+ + AGI + + +F ++++ + GKP + ++L A +S P+
Sbjct: 120 VRGALADAGIALHTYKDQAIFERSEVLTQ-AGKPYAVFTPYKNAWLAKADAFFLSSYPVQ 178
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKE 116
++L P VP + +LG++ EL G G ++ R +
Sbjct: 179 AYAAALAPRPTP---HRQPVPALAQLGFERSNLSELPLPVGMSGGRALFEEFRGRMGGYH 235
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+F +G + LS +L+FG +S R + + Q+ + + +
Sbjct: 236 QSRDFPAVRG---------PSYLSVHLRFGTVSIRELARTAHGLAQDGDAGAT---TWLS 283
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGN-----RICKQIPW---SNDDELLAAWREARTGYPWI 228
+L+WRDF++ V P+ G R I + ++ DEL AAW E RTGYP +
Sbjct: 284 ELIWRDFYFQVLANFPHVVDESGQGHSFRREYDAIAFERGAHADELFAAWCEGRTGYPLV 343
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M+QL + G+MH+ R A FL + D+ + W++G F L D D + NNG W W
Sbjct: 344 DAAMLQLNQTGYMHNRLRMVTASFLCK-DLGIAWQRGERYFALQLNDYDLSANNGGWQWA 402
Query: 289 SCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
S S Q Y RI++PVS +K+DP G +I +LP L +P+ ++ PWTA A
Sbjct: 403 SSSGCDAQPYFRIFNPVSQSRKFDPEGRFILKYLPQLAGLPEAVLHAPWTASPVELAAAG 462
Query: 348 CIIGRDYPAPVVSHDSASKECKRK 371
+GRDYPAPVV H++A ++ R+
Sbjct: 463 LALGRDYPAPVVDHEAAREQTLRR 486
>gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
Length = 505
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 183/385 (47%), Gaps = 45/385 (11%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY-----QSFLKLAGQPLWASSP 56
+V+ + AGI H +F +++ + GG P + ++LK +S P
Sbjct: 122 RVRGALADAGIAFHGSKDHVIFERDEVLTQGGG--PFSVFTPYRNAWLKKLDDFYLSSYP 179
Query: 57 LPVSLSSLPP--VGDVGYFEISEVPTVEELGYKGYGQEELSPFRG--GESEALKKLRESI 112
+ +L P G+ +PT+ ++G++ L G G E L E +
Sbjct: 180 VERHAGALAPKPAGET-------LPTLADIGFESTNLHALKLPSGPAGGRELLADFLERV 232
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
+F KG + L P+L+FG +S R + + +Q + +
Sbjct: 233 DHYADWRDFPAVKG---------PSYLGPHLRFGTVSIR---RLAREAHQRLTAGSRGAE 280
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC-----KQIPWSND---DELLAAWREARTG 224
+ +L+WRDF++ + P R+ G C ++ W + DEL AAW E RTG
Sbjct: 281 VWLSELVWRDFYHQLLHHHP---RVVGG--CFKPEYDRLHWEHGKHADELFAAWCEGRTG 335
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
YP +DA M QL + G+MH+ R A FLT+ D+ + W +G F R L D D A NNG
Sbjct: 336 YPIVDAAMHQLTRTGYMHNRLRMISASFLTK-DLGIDWRRGEAWFARHLNDFDLASNNGG 394
Query: 285 WLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQ 343
W W + + Q Y RI++PVS +++DP G +IR +LP L +P ++ PW A
Sbjct: 395 WQWAASTGCDAQPYFRIFNPVSQSERFDPEGRFIRRYLPQLAKLPDTLLHAPWRARPADL 454
Query: 344 TRAKCIIGRDYPAPVVSHDSASKEC 368
A ++GRDYPAPVV+H+ A +
Sbjct: 455 AAAGVVLGRDYPAPVVAHEEARERT 479
>gi|398914031|ref|ZP_10656755.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM49]
gi|398179240|gb|EJM66856.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM49]
Length = 480
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 179/355 (50%), Gaps = 27/355 (7%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GIEV + LF P ++ ++G + + F K+ + L S P SL P
Sbjct: 121 GIEVRRYLDQLLFQPGSVLTRSGTYFQV-FSQFRKVCYERLHHSLP---SLVRAPQKQAP 176
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
+P+ + G+ G S + GE++A +L +S SD + + +++ + P+
Sbjct: 177 LNIASDAIPSSVD-GFATPGDNLRSLWPAGEAQARDRL-DSFSDAQ-IDHYQSERDFPA- 232
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN----VKKHTSPPVSLVGQLLWRDFFYT 186
KP T+ LS YL G +S+R QCL + + + V+ + +LLWR+F+
Sbjct: 233 --KPGTSQLSAYLAAGVISAR---QCLRAALHSNQGEFESGNTGAVTWINELLWREFYKH 287
Query: 187 VAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ G P R + R + + W N E LAAW++ARTG P IDA M QL GWMH+
Sbjct: 288 ILVGYPRVSRHRAFRPETEALAWRNAPEELAAWQQARTGLPIIDAAMRQLLATGWMHNRL 347
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPV 304
R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P+
Sbjct: 348 RMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSVPYFRIFNPL 406
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
S +K+DP G +I+ +LP L + K+ ++ P G DYP+P+V
Sbjct: 407 SQSEKFDPEGVFIKQWLPELAGLNKKQVHNP-------ANLGGLFGGVDYPSPIV 454
>gi|423384690|ref|ZP_17361946.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
gi|401639360|gb|EJS57099.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
Length = 476
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 193/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W +S LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGNS-LPASLS------------VSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P + ++L+PYL FG +S + + L + ++ ++ S
Sbjct: 214 SK-----LASYSEGRDFPD---QNVHSMLAPYLSFGQISVKLMFHYLVN--KSTERQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW ++ELL+ W++ TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKEEELLSVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L D+P +YI++PW AP+ I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELSDIPNKYIHKPWEAPVHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP P+V H +A +
Sbjct: 443 ANIKLGDTYPYPIVDHKAARERA 465
>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|423586430|ref|ZP_17562517.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|401229948|gb|EJR36456.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
Length = 476
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 140/237 (59%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S + + L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW+ ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P LKD+P +YIY+PW AP I ++ +G YP P+V H +A +
Sbjct: 409 KNGEYIRRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERA 465
>gi|398830139|ref|ZP_10588333.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
gi|398215848|gb|EJN02409.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
Length = 489
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 148/279 (53%), Gaps = 13/279 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +KL + + D+ V +++ + P AT+ LSP+L G ++ +
Sbjct: 219 GEEGAREKLSDFLDDR--VPSYKNGRDIPGT---EATSRLSPHLAHGEITPFQIWHASKS 273
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+K + + ++ WR+F Y + F P N+ WS AW+
Sbjct: 274 --PAIKDQNGGLDTFLKEVGWREFSYHLLFNNPKLHTENFNKSFDGFEWSRKVSHFDAWK 331
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
+ TGYP +DA M QL + GWMH+ R A FL + + + W KG + F L+D+D A
Sbjct: 332 QGNTGYPIVDAGMRQLWQTGWMHNRVRMIAASFLIK-HLLIDWRKGEEWFWDTLVDADPA 390
Query: 280 INNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N +W W++ S + Y R+++P+ G+K+DPNG Y+R F+P+LKD+P +Y+++PWTA
Sbjct: 391 SNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPNGRYVRQFIPILKDLPDKYLHKPWTA 450
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYA 377
P A +G+DYP P+V H +A + + EAY+
Sbjct: 451 PAATLKAANIDLGKDYPEPIVEHGTA----RNRALEAYS 485
>gi|381182363|ref|ZP_09891174.1| deoxyribodipyrimidine photolyase [Listeriaceae bacterium TTU
M1-001]
gi|380317741|gb|EIA21049.1| deoxyribodipyrimidine photolyase [Listeriaceae bacterium TTU
M1-001]
Length = 463
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 150/279 (53%), Gaps = 12/279 (4%)
Query: 91 QEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSS 150
QE+ GE +ALK+L I K + +EK + P+ AT+ LSPY++ G +S
Sbjct: 189 QEQTFMELSGEKQALKQLDTFI--KHHLHTYEKNRDFPAL---DATSRLSPYIRTGAISI 243
Query: 151 RYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN 210
R Y + ++ + + +L WRDF++ + P+ ++ + + W+
Sbjct: 244 RTVYDAVMQA-----PYSEGRETFMKELAWRDFYHMIYKENPHQKNLEIKEHYRGLNWNT 298
Query: 211 DDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFD 270
+ W++ +TG+P +DA M QL + GWMH+ R VA FLT+ D+ W G F+
Sbjct: 299 NQAHFDKWKKGQTGFPIVDAAMRQLNETGWMHNRLRMIVASFLTK-DLLTDWRLGERYFE 357
Query: 271 RLLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPK 329
+LID D A N G W W S + Y RI++P + G+++DP+G++IR F+P L+ +P
Sbjct: 358 EMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQGERFDPHGHFIRQFVPELEFVPD 417
Query: 330 EYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+I++P ++ Q +AKC+IG YP +V H ++
Sbjct: 418 SFIHDPQKMSVSEQQKAKCLIGDVYPEKIVDHQKMREQA 456
>gi|383760053|ref|YP_005439039.1| deoxyribodipyrimidine photo-lyase Phr [Rubrivivax gelatinosus
IL144]
gi|381380723|dbj|BAL97540.1| deoxyribodipyrimidine photo-lyase Phr [Rubrivivax gelatinosus
IL144]
Length = 501
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 182/385 (47%), Gaps = 45/385 (11%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY-----QSFLKLAGQPLWASSP 56
+V+ + AG+ S H +F +++ + GG P + ++LK AS P
Sbjct: 122 RVRGALADAGVAFHSMKDHVVFERDEVLTQGGG--PFSVFTPYRNAWLKKLDDFYLASYP 179
Query: 57 LPVSLSSLPP--VGDVGYFEISEVPTVEELGYKGYGQEELSPFRG--GESEALKKLRESI 112
+ +L P G+ +PT+ E+G++ L G G E L E I
Sbjct: 180 VERHAGALAPKPAGET-------LPTLAEIGFETTNLHALKLPSGPAGGRELLADFLERI 232
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
+F KG + L P+L+FG LS R + + +Q +
Sbjct: 233 DHYADWRDFPAVKG---------PSYLGPHLRFGTLSIR---RLAREAHQRSTAGSRGAE 280
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC-----KQIPWSND---DELLAAWREARTG 224
+ +L+WR+F++ + P R+ G C ++ W + DEL AAW E RTG
Sbjct: 281 IWLSELIWREFYHQLLHHHP---RVVGG--CFKPEYDRLHWEHGKHADELFAAWCEGRTG 335
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
YP +DA M QL + G+MH+ R A FLT+ D+ + W +G F R L D D A NNG
Sbjct: 336 YPIVDAAMHQLTRTGYMHNRLRMISASFLTK-DLGIDWRRGEAWFARHLNDFDLASNNGG 394
Query: 285 WLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQ 343
W W + + Q Y RI++PV+ +++DP G +IR +LP L +P ++ PW A
Sbjct: 395 WQWAASTGCDAQPYFRIFNPVAQSERFDPEGRFIRRYLPQLARLPDALLHAPWRARPADL 454
Query: 344 TRAKCIIGRDYPAPVVSHDSASKEC 368
A ++GRDYP PVV+HD A +
Sbjct: 455 AAAGVVLGRDYPEPVVAHDEARERT 479
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 172/372 (46%), Gaps = 25/372 (6%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF-----LKLAGQPLWASSPLPVSLSSLP 65
G+EV S + L P D I N G P Y F K QPL P P L L
Sbjct: 132 GVEVKSFLDLALHAP-DAISTNSGTPYKVYTPFWRSWIAKAKPQPL----PSPAKLVGLD 186
Query: 66 PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPK 125
++ + L G+ ++ P G +A ++ + D + N+++ +
Sbjct: 187 GRTSESRSIEAKAIALPRLADLGFSCDQDIPTAG--IKAAEQCLQDFCDTNKIFNYQQER 244
Query: 126 GDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK--KHTSPPVSLVGQLLWRDF 183
P+ P T++LSP+L+FG + R +Q ++++ + + + +L WR+F
Sbjct: 245 NFPA---NPGTSMLSPHLRFGTIGIRQVWQATVAATEHIRSDEEKAGLQTWRQELAWREF 301
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+ V F P+ + W +D+ AAW + TGYP +DA M QL + GWMH+
Sbjct: 302 YQHVLFHFPDLATGAYRSQMQVFEWDDDEAKFAAWCKGETGYPIVDAAMRQLNQTGWMHN 361
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
R VA FLT+ D+ ++W+ G F L+D D A NNG W W + S + RI++P
Sbjct: 362 RCRMIVASFLTK-DLIINWQWGERYFMEKLVDGDQAANNGGWQWSASSGMDPKPLRIFNP 420
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
S +KYD +G YIR ++P L + + P + R YP P+V H
Sbjct: 421 ASQARKYDKDGEYIRRWIPELAGLTTAELLSGNITPQQCKERG-------YPMPIVDHAV 473
Query: 364 ASKECKRKLGEA 375
+E KR+ GEA
Sbjct: 474 QQREFKRRYGEA 485
>gi|389573401|ref|ZP_10163476.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. M 2-6]
gi|388427098|gb|EIL84908.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. M 2-6]
Length = 477
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 12/264 (4%)
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHTSPPV 172
+E + + + + PS + T+ LS +LK G +S R + + + ++++ K T
Sbjct: 220 QERLTRYHEKRDIPSVF---GTSKLSRFLKTGTISIRTIFHAVNEEELFEDEGKET---- 272
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
+ +L WRDF++ + P + N + I W++D+ L AW + +TG+P +DA M
Sbjct: 273 -FIKELAWRDFYHMIFAHYPEMKEKEINSSFQHIKWNDDETLFEAWCKGQTGFPLVDAGM 331
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCS 291
QL + GWMH+ R A FLT+ D F+ W KG F R L+D D A N G + W S
Sbjct: 332 RQLNEEGWMHNRLRMVTASFLTK-DYFIDWRKGEAYFARKLVDYDEASNIGGFQWAASVG 390
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+ Y RI++P + K++DP+G YIR ++P LK + +++I+EP P+ Q ++ C++G
Sbjct: 391 TDAVPYFRIFNPTTQSKRFDPSGEYIRRYVPELKHVNEKWIHEPSKMPIDEQMKSGCVLG 450
Query: 352 RDYPAPVVSHDSASKECKRKLGEA 375
YP P V H K EA
Sbjct: 451 DTYPLPTVDHQERRKRAISTFEEA 474
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 186/367 (50%), Gaps = 23/367 (6%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
G+ V + F+P +++ NG Y F + L S +P + P + +
Sbjct: 121 GVRVKAFTDQVCFHPQRVLKDNGQ----PYTVFTPYQKKWLALSGNIP---TPQPALTRI 173
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPF-RGGESEALKKLRESISDKEWVANFEKPKGDPS 129
E+ +P + + + + P +GGE + LK+LR +S + ++++ + P+
Sbjct: 174 STPELPSIPLPKTSDIRK--KFSVQPIVQGGEPKGLKRLRAFLSQN--IYHYKELRDFPA 229
Query: 130 AYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVA 188
AT++LS L+FG LS R+ F++ + V Q + + + +L+WR+F++ +
Sbjct: 230 TN---ATSLLSADLRFGTLSIRHVFHESMRLVPQASEPAREGIQTFISELIWREFYFQIL 286
Query: 189 FGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHC 248
P+ ++ + + W N++ AW+ +TGYP +DA M LR+ GWMH+ R
Sbjct: 287 DHFPHVEKHSFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMI 346
Query: 249 VACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFG 307
VA FLT+ D+ + W G F + LID D A NNG W W + + Q Y RI++PV
Sbjct: 347 VASFLTK-DLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQS 405
Query: 308 KKYDPNGNYIRHFLPVLKDMPKEYIYEPW----TAPLTIQTRAKCIIGRDYPAPVVSHDS 363
+K+DP G +IR ++P L+ +P YI+ P +PL + +G+DYP P+V H
Sbjct: 406 QKFDPKGEFIRKYVPELQAVPVRYIHFPAEILRKSPL-LAREIGVALGKDYPHPIVEHKV 464
Query: 364 ASKECKR 370
++ R
Sbjct: 465 QREKALR 471
>gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding
[Cupriavidus taiwanensis LMG 19424]
gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Cupriavidus taiwanensis LMG 19424]
Length = 519
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 17/343 (4%)
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
P PV LP + V VPT+ +LG++ E++ G + + L E + +
Sbjct: 189 PYPVE-PYLPALAPVPAAYRLPVPTIAQLGFRASNLAEIAMPTG--ASGAQALFEEFTGR 245
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+ ++ + + P+ + LS +L+FG +S R + + ++ +
Sbjct: 246 --MGDYGRRRDYPALR---GPSYLSVHLRFGTISIRTLARVAHEAMLRGGADSAGAAVWL 300
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDD---ELLAAWREARTGYPWIDAI 231
+L+WRDF++ + P + I W + D AWR+A TGYP IDA
Sbjct: 301 SELIWRDFYFMILHHHPRVAAGAAFHPAYDAIRWQDGDTGERYFHAWRDAATGYPLIDAA 360
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M+Q+R+ G+MH+ R A FL + D+ V W +G F L D D A NNG W W + +
Sbjct: 361 MLQIRQSGYMHNRLRMVTASFLVK-DLGVDWRRGEQYFADQLNDFDLAANNGGWQWAAST 419
Query: 292 SFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
Q + RI++PV+ +K+DP G +IR +LP L +P +Y++ PWTAP + A +
Sbjct: 420 GCDAQPWFRIFNPVTQSQKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRL 479
Query: 351 GRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKN 393
G +YP P+V HD A ++ R+ A+ Q + +V + G ++
Sbjct: 480 GDNYPRPLVQHDVARQQTLRRYE---AVKQVVKQEVKDAGAED 519
>gi|384045337|ref|YP_005493354.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
gi|345443028|gb|AEN88045.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
Length = 475
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 13/279 (4%)
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
S + E A+ + + +K + ++EK + P+ + LSPY G LS+R Y
Sbjct: 197 STWDATEQGAINSFKTFLKNK--LLHYEKGRDFPAEAF---NSFLSPYFASGQLSARVLY 251
Query: 155 QCLTD----VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN 210
L + V N +H + + QL+WRDF Y + + P+ N KQ W++
Sbjct: 252 HYLRNKAEKVSSNAFEHQTE--MFIRQLVWRDFAYQLLYHFPHTTSEPLNEKFKQFQWAD 309
Query: 211 DDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFD 270
+E L AW+ +TGYP +DA M +L + G+MH+ R A FL + + +HW+ G + F
Sbjct: 310 GNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMVAASFLVKH-LLIHWKHGANWFF 368
Query: 271 RLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPK 329
L+D+D A N W W++ S + Y RI++P + +K+D G YI+ +LP L+D+P
Sbjct: 369 DTLVDADLANNTMGWQWIAGSGADAAPYFRIFNPTAQSEKFDKEGEYIKKWLPELRDLPS 428
Query: 330 EYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
YI++PW AP + +A + + YP P+V H +A +
Sbjct: 429 SYIHKPWEAPADVLEKANVTLDKTYPTPIVDHKAARERA 467
>gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
Length = 466
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 182/387 (47%), Gaps = 38/387 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPL---TYQSFLKLAGQPLWASSPLP 58
+V D+ GI V + L DI++ +G + YQS+ K QP+
Sbjct: 102 QVTDFLEKKGIHVSTWQDTHLHGAQDILKADGSHYQVFTPYYQSWRKQEKQPVIKV---- 157
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF---------RGGESEALKKLR 109
D +F + E L KG E+L + G +A+ L+
Sbjct: 158 ----------DKSFFSSGHMICDESLSQKG--NEKLRDLIKGCSRKFDQIGTEKAMNTLQ 205
Query: 110 ESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS 169
+ I + + +++ + PS + T+ LS +LK G +S R + +Y+
Sbjct: 206 QFIQKR--LTRYQEKRDIPSVF---GTSKLSRFLKTGTISIRTIFHA---IYEEALYEDE 257
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229
+ + +L WRDF++ + P + N + + W++D+ L AW + TG+P +D
Sbjct: 258 GRETFIKELAWRDFYHMIYAHYPEMKEKEINSAFQGMRWNDDETLFEAWCKGETGFPLVD 317
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-L 288
A M QL + GWMH+ R A FLT+ D + W KG F + L+D D A N G + W
Sbjct: 318 AGMRQLNEEGWMHNRLRMVTASFLTK-DYLIDWRKGEAYFAKKLVDYDEASNIGGFQWAA 376
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
S + Y RI++P++ K++DP+G +IR ++P L+ + +++I+EP P+ Q ++ C
Sbjct: 377 SVGTDAVPYFRIFNPITQSKRFDPSGEFIRKYVPELEHIDEKWIHEPSKMPIDEQLKSGC 436
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEA 375
++G YP P V H K+ EA
Sbjct: 437 VLGDTYPLPTVDHQERRKKAISLFEEA 463
>gi|389695632|ref|ZP_10183274.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
gi|388584438|gb|EIM24733.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
Length = 492
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 179/372 (48%), Gaps = 17/372 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVSL 61
VK + +GI+ S L P DI+ + G+P + +L+ + + L A+ P +
Sbjct: 116 VKKRLTDSGIKAHSFNGRLLHEPWDIVNQ-AGRPFQVFTPYLRTVMTRGLKAALAPPKRI 174
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYK----GYGQEELSPFRGGESEALKKLRESISDKEW 117
P G ++ +EELG + + + +R GE A K R +S
Sbjct: 175 ----PGGIWPSSLLASTIPLEELGLEPSSPDWAGGLRTAWRPGEEAARKSFRHFLSKG-- 228
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
+ + + + PS T+ LSP+L+FG +S R + +T + +
Sbjct: 229 LRGYAENRDRPSLI---GTSRLSPHLRFGEISPRQIWHAVTAQVAEHPSLARDAEKYLSE 285
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
++WRDF + + P+ + PW +D + L AWR RTGYP +DA M QL +
Sbjct: 286 IVWRDFSHQLLHFHPHLPVRSHSSRFDAFPWIDDPKTLKAWRRGRTGYPIVDAGMRQLWQ 345
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS-FFYQ 296
GWMH+ R A FL + + W KG F L+D+D A N +W W++ S
Sbjct: 346 TGWMHNRVRMITASFLVK-HLLTDWRKGEAWFWDTLVDADPANNAFSWQWVAGSGPDSAP 404
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
++RI++PV+ G+K+DP+G+Y+R F+P L +P +++ PW AP + A +G YP
Sbjct: 405 FHRIFNPVTQGEKFDPDGDYVRTFVPELAGLPSTFLHHPWDAPPAVLQEAGISLGETYPE 464
Query: 357 PVVSHDSASKEC 368
P+V H A +
Sbjct: 465 PIVVHGLARERA 476
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 180/376 (47%), Gaps = 29/376 (7%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS----LP 65
AGI + + + H L A + GG+ + G P +P +L P
Sbjct: 109 AGISIDARIKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGDEPEP 168
Query: 66 PVGDVGYFEI-SEVPTVEEL-------GYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P+ + S++PT E L + + + + GE A ++L + D
Sbjct: 169 PLEAPAELRLTSQLPTSETLESWKLLPTKPDWAGDFVDLWTPGEEGAQQRLHAFVEDA-- 226
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
+ +++ + P+ +PAT++LSP+L G +S + + Q V + V +
Sbjct: 227 LEGYKENRDYPA---RPATSMLSPHLALGEISPARIWDATRGLSQRVP--AADIVHFRKE 281
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
+ WR+F Y + F P N + W ND + AWR TGYP +DA M QL +
Sbjct: 282 IAWREFSYHLLFHFPRLASANWNDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWR 341
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CSS 292
GWMH+ R VA FL + D+ + W +G F L+D+D A N +W W++ S
Sbjct: 342 HGWMHNRVRMIVASFLIK-DLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASP 400
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
FF RI++PV G+K+DPNG+Y++ ++P L+++ +YI+ P+ AP ++ A +G+
Sbjct: 401 FF----RIFNPVLQGEKFDPNGDYVKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQ 456
Query: 353 DYPAPVVSHDSASKEC 368
YP P+V H SA
Sbjct: 457 TYPRPIVDHASARNRA 472
>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425266|ref|ZP_17402297.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|423506140|ref|ZP_17482730.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449089482|ref|YP_007421923.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112481|gb|EJQ20359.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|402449071|gb|EJV80909.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449023239|gb|AGE78402.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 476
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 195/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMILEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPINRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W +S LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGNS-LPASLS------------VSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S +A++ + + P+ + ++L+PYL FG +S + + L + ++ ++ +S
Sbjct: 214 SK-----LASYSEGRDFPN---QNVHSMLAPYLSFGQISVKLMFHYLIN--KSTERQSSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
+ +G YP P+V H +A +
Sbjct: 443 SNIKLGNTYPYPIVDHKAARERA 465
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 169/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q A +L L
Sbjct: 119 TKGIEVETFWDQLLQAPGQVLTLSKS-PYTVYTPFWKNWSQLAKARPKTLENLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE A +L E + N+++ + P
Sbjct: 178 GEKLTETINLPTLENLGFTWQNPLPLTP---GEKAADSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+DP G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|343515133|ref|ZP_08752192.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
gi|342798665|gb|EGU34263.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
Length = 483
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 153/283 (54%), Gaps = 30/283 (10%)
Query: 106 KKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
K +R+ + + E V N+ + P+ AT++LSPYL G LS R QC+ V +
Sbjct: 214 KAIRQLLCEFCHERVDNYHNDRDKPAL---NATSMLSPYLAIGALSVR---QCVARVLYS 267
Query: 164 VKKH--TSPPV-----SLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC---KQIPWSNDDE 213
+ H TSP + + + +L+WRDF+ + P KG +++ W +
Sbjct: 268 AQAHQITSPLLGEGIHTWISELVWRDFYQHLLHFEPKL--CKGRHFVTWTEKMHWPGSKQ 325
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
LAAW++ TGYP +DA M QL + GWMH+ R VA FLT+ D+ VHW G F + L
Sbjct: 326 HLAAWQKGMTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK-DLHVHWHHGERYFMQKL 384
Query: 274 IDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
+D D+A NNG W W + + Q Y RI++P + G+++D +G+++RH++ L +P +YI
Sbjct: 385 VDGDYAANNGGWQWSASTGCDAQPYFRIFNPTAQGERFDSDGDFVRHWISELSAVPNKYI 444
Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
++PW R + +I YP P+V H S + R +A
Sbjct: 445 HQPW--------RWENVISLSYPKPMVDHKSEREITLRLFQDA 479
>gi|423528953|ref|ZP_17505398.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
gi|402449821|gb|EJV81656.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
Length = 476
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 192/383 (50%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPIRKVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + +P G + KK
Sbjct: 167 KWGSS-LPASLS------------VSELHLLPTIPWTSHMEAIWNPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P + ++L+PYL FG +S + + L + ++ ++ S
Sbjct: 214 SK-----LVSYSEGRDFPD---QNVHSMLAPYLSFGQISVKLMFHYLIN--KSTERQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW ++ELL+ W++ TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKEEELLSVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELSDIPNKYIHKPWEAPAHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP P+V H +A +
Sbjct: 443 ANIKLGDTYPYPIVDHKAARERA 465
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 169/364 (46%), Gaps = 19/364 (5%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIEV + L P ++ + P Y F K Q AS +L L
Sbjct: 119 TKGIEVETFWDQLLHAPGQVLTLSKS-PYTVYTPFWKNWSQLAKASPKTLENLQGLDENE 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
E +PT+E LG+ L+P GE A +L E + N+++ + P
Sbjct: 178 GEKLAETINLPTLENLGFTWQNPLPLTP---GEKAATSRLEEFCQGV--INNYQEDRNFP 232
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYT 186
+ T+ LS LKFG + R + ++ +N + + + Q L WR+F+
Sbjct: 233 AF---DGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQELAWREFYQH 289
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ P + + PW +++E AW + +TGYP +DA M QL + GWMH+ R
Sbjct: 290 CLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSF 306
VA FLT+ D+ ++W+KG F + L D D A NNG W W + S + RI++P S
Sbjct: 350 MIVASFLTK-DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+K+D G YIR +LP L + EY+ T + R +C YP P+V H+ K
Sbjct: 409 TQKFDLEGEYIRQWLPELASVDTEYLV---TGKIPRLERHRC----GYPEPIVDHNQQQK 461
Query: 367 ECKR 370
E KR
Sbjct: 462 EFKR 465
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 188/393 (47%), Gaps = 33/393 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVS 60
+V TAGI L +P D I G P Y F K QP P
Sbjct: 112 QVAAALKTAGIRAVQLWDQLLHSP-DQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTE 170
Query: 61 LSSLPP--VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
L L P + + +SE+PT+++LG+ G + P GE+ A+ +L+E D+ +
Sbjct: 171 LVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEP---GETAAIARLQE-FCDRA-I 225
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ- 177
A+++ + P+ + T+ LSP LKFG + R ++ + + + + V Q
Sbjct: 226 ADYDPQRNFPA---EAGTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQ 282
Query: 178 -LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
L WR+F+ + P+ + +Q PW N + L AW +A+TGYP +DA M QL
Sbjct: 283 ELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLT 342
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GWMH+ VA FLT+ D+ + W +G F + L+D D A NNG W W + S +
Sbjct: 343 ETGWMHNRCWMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPK 401
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDM-PKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
RI++P S KK+D YI+ +LP L+ + PK+ I T I R YP
Sbjct: 402 PLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITP----------IGRRGYP 451
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSE 388
AP+V+H+ K+ K AL +L ++E
Sbjct: 452 APIVNHNLRQKQFK-------ALYNQLKAAIAE 477
>gi|422701792|ref|ZP_16759632.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
Length = 477
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 184/383 (48%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASAPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDVANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P T+QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNETLQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 142/274 (51%), Gaps = 17/274 (6%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+ AL KL++ + + ++ + P KPAT++LSP+L G +S +
Sbjct: 213 GEAAALDKLKDFVDGA--LNDYAIGRDFPD---KPATSLLSPHLALGEISPARMWHATRG 267
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ V T V +++WR+F Y F P N PW +D + L +W+
Sbjct: 268 LPDKVG--TDNVVRFRKEIIWREFCYHQLFHFPKLRTANWNDRYDDFPWLSDAKRLKSWQ 325
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
+TGYP +DA M QL + GWMH+ R A FL + D+ + W +G F L+D+D A
Sbjct: 326 RGQTGYPIVDAGMRQLWRHGWMHNRVRMIAASFLIK-DLLIDWREGEAWFRDTLVDADPA 384
Query: 280 INNGNWLWLS-----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYE 334
N NW W++ S FF RI++PV G+K+DP+G Y+R F+P L + +YI+
Sbjct: 385 ANTANWQWVAGSGADASPFF----RIFNPVLQGEKFDPDGGYVRTFVPELSKLDSKYIHR 440
Query: 335 PWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
P+ AP + RA +GR YP P+V H A +
Sbjct: 441 PFEAPDDVLKRAGIELGRHYPRPIVDHAMARQRA 474
>gi|333899133|ref|YP_004473006.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
gi|333114398|gb|AEF20912.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
Length = 483
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 177/359 (49%), Gaps = 30/359 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
G+ S + LF P ++ + G + Y F + Q L + P V+ PP
Sbjct: 122 GVNFHSHLDRLLFKPGSVLTRTGTYFKV-YSQFRGVCYQRLHTALPKLVA----PPKAQ- 175
Query: 71 GYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
E++ P E++ G+ Q + GE A ++L + +D EW+ ++ + P
Sbjct: 176 AKLEMAADPIPEQVAGFDTPSQALRDAWPAGEDAARERL-QRFAD-EWIEDYHDNRDFP- 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ----NVKKHTSPPVSLVGQLLWRDFFY 185
++P T+ LS YL G LS R QCL + V+ + +L+WR+F+
Sbjct: 233 --IRPGTSQLSAYLAAGVLSPR---QCLHAALNANGGEFENGNQGAVTWINELIWREFYA 287
Query: 186 TVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ G P+ + R + +PW N + L AW+E RTG P IDA M QL + GWMH+
Sbjct: 288 HILVGYPHVSMARAFRPETEALPWRNAAKDLQAWQEGRTGIPIIDAAMRQLLETGWMHNR 347
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSP 303
R VA FLT+ ++ + W +G F R LID D A NNG W W S + Y RI++P
Sbjct: 348 LRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNP 406
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII---GRDYPAPVV 359
+S +++DP+G +IR +LP L + + I++P ++ + + G DYP P+V
Sbjct: 407 ISQSQRFDPDGRFIRQWLPELASLSDKTIHDPHAG-----SKGQASLFGGGVDYPKPIV 460
>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
Length = 476
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 188/381 (49%), Gaps = 36/381 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMILEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W +S LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGNS-LPASLS------------VSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHT 168
S +A++ + + P + ++L+PYL FG +S + + L + +
Sbjct: 214 SK-----LASYSEGRDFPD---QNVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFE 265
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
S + QL+WR+F Y + + P N+ + PW ++ELL+ W++ TGYP+I
Sbjct: 266 KQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKEEELLSVWQKGETGYPFI 325
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W W+
Sbjct: 326 DAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWV 384
Query: 289 SCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
+ S Y RI++P++ G+K+D NG YIR ++P L D+P +YI++PW AP I +A
Sbjct: 385 AGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELSDIPNKYIHKPWEAPAHILQKAN 444
Query: 348 CIIGRDYPAPVVSHDSASKEC 368
+G YP P+V H +A +
Sbjct: 445 IKLGDTYPYPIVDHKAARERA 465
>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
Length = 515
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 25/337 (7%)
Query: 51 LWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKG--YGQEELSPFRGGESEALKKL 108
++AS P P L LP + E+ E+PT+++LG + + Q + F+GGE+ + +L
Sbjct: 190 IYASFPTPQRLPILPQI------EVGELPTLQKLGLETPQFDQRSVLKFQGGETAGISRL 243
Query: 109 RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
+ I +++ + ++++ + ++ SP+L GCLS R+ Y + D Y+ +
Sbjct: 244 TDYIWEQDCLKDYKQTRNGMLG--ANYSSKFSPWLALGCLSPRFIYDHVQD-YEEQRVKN 300
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPN-FDRMKGNRICKQIPWSNDDELLAAWREARTGYPW 227
LV +LLWRD+F + N R+ G + IPW D E WR TG+P
Sbjct: 301 DSTYWLVFELLWRDYFRFICLKHGNKIFRLSGLQGV-SIPWKEDWERFECWRTGTTGFPL 359
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
+DA M +L G+M + R VA FLT+ ++ ++W+ G + F+ LL+D D N GNW +
Sbjct: 360 VDANMRELAATGFMSNRGRQNVASFLTK-NLGINWKMGAEWFESLLVDYDVCSNWGNWNY 418
Query: 288 LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
+ + R ++ K YD NG+Y++H+LP L +P ++EPW Q R
Sbjct: 419 TAGVGNDARGFRYFNIPKQAKDYDSNGDYVKHWLPELAALPASKVHEPWMLQPVEQKRFG 478
Query: 348 CIIGRDYPAPVV-----------SHDSASKECKRKLG 373
+G DYP PVV S+++A + K LG
Sbjct: 479 VKLGVDYPNPVVDLMKSVQSNKKSYEAALSKAKHPLG 515
>gi|424881257|ref|ZP_18304889.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517620|gb|EIW42352.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 483
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 32/377 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAG-----QPLWASSP 56
+K IE S L P+ ++ NG P Y F + L G QPL A +
Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNG-TPYRVYTPFWRALEGGGEPEQPLEAPAK 175
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
L ++ S LP + +++ +PT + + + + +P GE A +KLR I D
Sbjct: 176 LRIA-SQLPKSEALESWKL--LPTKPD--WAVHFTDLWTP---GEDGAHEKLRAFIEDA- 226
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ +++ + P+ +PAT++LSP+L FG +S + + + V + V
Sbjct: 227 -LDGYKENRDYPA---RPATSLLSPHLAFGEISPARIWDATRGLSKRVA--AADVVHFRK 280
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
++ WR+F Y + F P N W NDD+ W TGYP +DA M QL
Sbjct: 281 EIAWREFSYHLLFHFPRLASNNWNDRFDGFEWRNDDDDFKVWCRGMTGYPIVDAGMRQLW 340
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CS 291
+ GWMH+ R VA FL + D+ + W +G F L+D+D A N +W W++ S
Sbjct: 341 RHGWMHNRVRMIVASFLIK-DLMIDWRRGEAWFRDTLVDADTANNAASWQWVAGSGADAS 399
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
FF RI++PV G+K+DP+G+Y+R ++P L+++ +YI+ P+ AP ++ A +G
Sbjct: 400 PFF----RIFNPVLQGEKFDPDGDYVRTYVPELRELGVKYIHRPFEAPKSMLDEAGITLG 455
Query: 352 RDYPAPVVSHDSASKEC 368
+ YP P+V H SA
Sbjct: 456 QTYPKPIVDHASARNRA 472
>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
Length = 476
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 135/235 (57%), Gaps = 4/235 (1%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
++L+PYL FG +S + + L + + S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
N+ + PW ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPN 313
+ + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D N
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
G YIR ++P L+D+P +YI++PW AP I +A +G YP P+V H +A +
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARERA 465
>gi|423398956|ref|ZP_17376156.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|423410080|ref|ZP_17387228.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
gi|401645588|gb|EJS63241.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|401650994|gb|EJS68562.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
Length = 476
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 139/237 (58%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S + + L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+D+P +YI++PW AP I +A +G YP P+V H +A +
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPKHILQKANIKLGDTYPFPIVDHKAARERA 465
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 161/320 (50%), Gaps = 12/320 (3%)
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEE--LSPFRGGESEALKKLRESISDK 115
P L SLP V EI +P++EELG K + + F+GGE+ +K+L++ ++
Sbjct: 175 PRKLLSLPDV------EIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIKRLQDYFWER 228
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+ +++ + ++ SP+L GCLS RY Y+ + Y+ + + L+
Sbjct: 229 NCLKEYKETRNGMLG--ADYSSKFSPWLAHGCLSPRYIYEEVQK-YEEERVKNNSTYWLI 285
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
+LLWRD+F + N K IPW D + W+E +TGYP +DA M ++
Sbjct: 286 FELLWRDYFRFICAKHGNKIFYKSGLQGLDIPWKEDQDRFILWQEGKTGYPLVDANMREI 345
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
G+M + R VA FLT+ ++ ++W G + F+ LLID D N GNW + +
Sbjct: 346 AATGFMSNRGRQNVASFLTK-NLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDA 404
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
+ R ++ K YD G+Y+RH+LP LK +P + I+EPW Q R IG DYP
Sbjct: 405 RGFRYFNIPKQSKDYDSKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYP 464
Query: 356 APVVSHDSASKECKRKLGEA 375
PVV + K ++ A
Sbjct: 465 KPVVDFFKSVKANEKVYNSA 484
>gi|389686026|ref|ZP_10177349.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
gi|388550368|gb|EIM13638.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
Length = 481
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 182/368 (49%), Gaps = 37/368 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + G+ S + LF P ++ K+GG + + F K+ L S LP L+
Sbjct: 113 VASLLKSQGVSFHSYLDQLLFRPGSVLTKSGGYFQV-FSQFRKVCYNRL--HSALPPQLA 169
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+ P + +P E G+ G + + GE+ A ++L + + +++
Sbjct: 170 A-PRAQAALRIKADALPRQVE-GFPTPGPHLQALWPAGETAAQQRLAHFAETQ--LVHYQ 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK---KHTSP-PVSLVGQL 178
+ P+ KP T+ LSPYL G LS R QCL QN + SP V+ + +L
Sbjct: 226 AERDLPA---KPGTSQLSPYLAAGVLSPR---QCLHAALQNNRGEFASGSPGAVTWINEL 279
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LWR+F+ + G P R + R + + W + + LAAW++ARTG P IDA M QL +
Sbjct: 280 LWREFYKHILVGYPRVSRHRAFRPETEAVAWRDAPDELAAWQQARTGLPIIDAAMRQLLE 339
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQ 296
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 340 TGWMHNRLRMIVAMFLTK-NLLIDWRQGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAP 398
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG----- 351
Y RI++P+S +++D G +IRH+LP L ++ ++ I+ P IG
Sbjct: 399 YFRIFNPLSQSQRFDSQGTFIRHWLPELAELNEKDIHNP------------AAIGGLFGV 446
Query: 352 RDYPAPVV 359
DYP P+V
Sbjct: 447 ADYPRPMV 454
>gi|424813932|ref|ZP_18239110.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339757548|gb|EGQ42805.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 471
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 170/314 (54%), Gaps = 32/314 (10%)
Query: 73 FEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYL 132
E E+P+V ELG++ E++S + GG L+++++ K+ + ++++ +
Sbjct: 171 LESVEIPSVSELGFEK--PEDMSVWEGGRENGLQRMKQF---KQNIKDYDQAR---DYAW 222
Query: 133 KPATTVLSPYLKFGCLSSR-YFYQCLTDVYQNVKKHTSPPVSLVG---QLLWRDFFYTVA 188
+ +T+ LSP+LKFG +S R F++ + +K+ S + +L WRD++ +
Sbjct: 223 RDSTSKLSPHLKFGTVSIREVFWEA-----ERMKEDDSDSEGIETWQEELAWRDYYMQIL 277
Query: 189 FGTPN------FDRMKGNRICKQIPWSNDDEL---LAAWREARTGYPWIDAIMVQLRKWG 239
+ P+ D+ +GN + W + ++ AW E +TGYP++DA M QL+K G
Sbjct: 278 WNYPHEVDEPFMDKYRGN----EPDWDSKEDAPQKWNAWVEGKTGYPFVDAGMRQLKKTG 333
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYN 298
WMH+ R V F + D+++ W D F R+ +D++ A G W S + Y
Sbjct: 334 WMHNRLRMVVTNFSCK-DLWLEWRNVHDYFSRMFVDAEIASMVGGIQWSYSIGTDAQPYF 392
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
R+++P+S ++YDP+G YIR ++P L+D+P E+I+EPW + Q + IG DYP P+
Sbjct: 393 RVFNPMSQSERYDPDGKYIRKWVPELEDVPDEHIHEPWKMSQSQQEQCGVTIGDDYPEPI 452
Query: 359 VSHDSASKECKRKL 372
V HD KE +
Sbjct: 453 VDHDEKRKESVERF 466
>gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
Length = 483
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 193/392 (49%), Gaps = 31/392 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK--LAGQPLWASSPLPVS 60
+ + IE H L NP + K G KP + + K LA + + P+P +
Sbjct: 112 IHKWCKQHNIECKRFAGHLLLNPDTHLNKQG-KPFQVFTPYYKAALATHTIPRAKPIPSN 170
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
L+ + + + + ++ L + + S ++ GE A K LRE+I DK +A+
Sbjct: 171 LAKVWAAKKLP--KSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDK--IAS 226
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + + P+ T++LS +L+FG +S R +Q + Q + +P + QL+W
Sbjct: 227 YTRDRDFPAV---DGTSLLSAHLRFGEISPRQIWQQVAT--QMDGEQCAP---FLRQLMW 278
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWS-----NDDELLAAWREARTGYPWIDAIMVQL 235
RDF Y + P+ + + ++ PW N + L AW+ TGYP +DA M QL
Sbjct: 279 RDFSYALLHHWPHIPQQAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQL 338
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFF 294
+ GWMH+ R VA FLT+ + +HW +G F L+D+D A N W W++ C +
Sbjct: 339 WQTGWMHNRVRMIVASFLTK-HLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADA 397
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD- 353
Y RI++PV G+K+D G YI+ ++P L +P ++I+ PW AP I A +G +
Sbjct: 398 APYFRIFNPVLQGEKFDKQGEYIKTWVPELAALPAKFIHAPWLAPQDILQTAGISLGNNS 457
Query: 354 -YPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
YP P+V H A + A A Q+L G
Sbjct: 458 TYPLPIVDHKYARE-------AALAAYQQLKG 482
>gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
gi|422706634|ref|ZP_16764332.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
Length = 477
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 183/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 135/237 (56%), Gaps = 9/237 (3%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS---LVGQLLWRDFFYTVAFGTP 192
T+ LSP+L FG +S R + + + +++H+ P S + ++ WR+F + + F P
Sbjct: 267 TSRLSPHLHFGEISPRTIWH---ETQRRLRQHSQDPTSAETFLKEVGWREFAHHLLFHFP 323
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N R PW ND+ L AW+ +TGYP +DA M +L GWMH+ R VA F
Sbjct: 324 NTPREPLRSEFANFPWINDNPRLKAWQTGQTGYPIVDAGMRELWTTGWMHNRVRMIVASF 383
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYD 311
L + D+ + W+KG + F L+D+D A N W W + C + + RI++PV +K+D
Sbjct: 384 LVK-DLLIPWQKGAEWFWDTLVDADLASNTLGWQWTAGCGADAAPFFRIFNPVLQSQKFD 442
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
G+YIR ++P LK++P ++I+ PWTA ++ T A + + YP P+V HD A + C
Sbjct: 443 AEGHYIRRWVPELKNLPTKWIHAPWTASQSVLTAAGVTMDQAYPLPIVDHDEA-RHC 498
>gi|339493937|ref|YP_004714230.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338801309|gb|AEJ05141.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 476
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 181/361 (50%), Gaps = 35/361 (9%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAS-SPLPVSLSSL--P 65
AGI+V + LF P ++ ++GG + K+ GQ A + L +SL + P
Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGG--------YFKVFGQFRRACLARLAMSLPACVAP 171
Query: 66 PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPK 125
P S+VP E G+ + + GE+ A +L I D + + + +
Sbjct: 172 PAPQQAMTVTSDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIEDD--LHQYHQRR 229
Query: 126 GDPSAYLKPATTVLSPYLKFGCLSSRYFYQCL-TDVYQN---VKKHTSPPVSLVGQLLWR 181
P+ +P T+ LS YL G +S R QCL V N + ++ + + +LLWR
Sbjct: 230 DLPA---EPGTSQLSAYLAAGVISIR---QCLHAAVASNRGELDSGSAGATTWINELLWR 283
Query: 182 DFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
+F+ + G P + R + +PW + L AW+E RTG+P IDA M QLR+ GW
Sbjct: 284 EFYKHILVGYPRVSMHRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGW 343
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNR 299
MH+ R A FL++ ++ + W +G F R LID D A NNG W W S + Y R
Sbjct: 344 MHNRLRMVTAMFLSK-NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFR 402
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR-DYPAPV 358
+++P+S +++DP+G ++R +LP L+ + K I+ P + + + G+ DYPAP+
Sbjct: 403 LFNPISQSQRFDPDGQFLRRWLPELQGLGKREIHNP--------SAQRSLFGKADYPAPI 454
Query: 359 V 359
+
Sbjct: 455 I 455
>gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96]
gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
512]
gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
516]
gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96]
gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
512]
gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
516]
Length = 477
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 183/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|289678393|ref|ZP_06499283.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
FF5]
Length = 482
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 184/384 (47%), Gaps = 34/384 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG+ S + LF P I+ K G + + F K+ L + P PV
Sbjct: 113 VQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPYPVRTP 171
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
P + S+V + G+ + + GE+EA +++ ++ +D E ++ ++
Sbjct: 172 KAQPAQSIK----SDVVPDQVKGFAMPSKALRDLWPAGEAEARRRM-DTFAD-EQISYYK 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+ P+ KP T+ LS YL G +S R + L + V+ + +LLWR
Sbjct: 226 TERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWR 282
Query: 182 DFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + GW
Sbjct: 283 EFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGW 342
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNR 299
MH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y R
Sbjct: 343 MHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFR 401
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RDY 354
I++P+S +++DP G +I+ +LP L DM K+ I++P +IG DY
Sbjct: 402 IFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAADY 449
Query: 355 PAPVVSHDSASKECKRKLGEAYAL 378
P P+V SK R L AL
Sbjct: 450 PKPIV---DLSKSRARALAAFKAL 470
>gi|326315673|ref|YP_004233345.1| deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 495
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 182/384 (47%), Gaps = 40/384 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V+ G+++ + HT+F A+++ + GG P + + + W L
Sbjct: 121 RVRHRLGAGGVQMLTYKDHTVFERAEVLTQ-GGTPYTVFTPY-----KNAWLRKVDAFYL 174
Query: 62 SSLPPVGDVGYFE------ISEVPTVEELGYKGYGQEELS--PFRGGESEALKKLRESIS 113
S+ P G VP + ++G++ G + L P G L + I
Sbjct: 175 SAYPVERHAGRLAPRPEGARGSVPALADIGFEPAGLDRLPLPPGMEGARTLLDDFLQRID 234
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
+F KG + LS +L+FG LS + ++ +++ ++ +
Sbjct: 235 QYGEARDFPAVKG---------PSYLSVHLRFGTLSP---RRAARAAHERMRQGSTGAAT 282
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND---DELLAAWREARTGYP 226
+ +L+WRDF++ V P ++ G K IPW + E AAW E RTGYP
Sbjct: 283 WLSELIWRDFYFQVLAHHP---QVAGGASFKPAYDAIPWEDGPQAQERFAAWCEGRTGYP 339
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+DA M Q+ + G+MH+ R VA FL + D+ V W +G F L D D + NNG W
Sbjct: 340 LVDAAMAQINQTGYMHNRLRMVVASFLVK-DLGVDWRRGERYFAEKLNDFDLSANNGGWQ 398
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA-PLTIQT 344
W S S Q Y RI++PVS +K+DP G +IR +LP L +P +++ PW A PL ++
Sbjct: 399 WASSSGCDAQPYFRIFNPVSQSRKFDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEA 458
Query: 345 RAKCIIGRDYPAPVVSHDSASKEC 368
A +G +YP P+V HD A ++
Sbjct: 459 -AGVRLGDNYPHPIVDHDEARQKT 481
>gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
Length = 473
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 183/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 114 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 171
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 172 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 215
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 216 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 267
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 268 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 327
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 328 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 386
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 387 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDY 446
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 447 ASSKKQTLFLYEASKEIHQEMNN 469
>gi|398876027|ref|ZP_10631187.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM67]
gi|398205319|gb|EJM92103.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM67]
Length = 481
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 175/339 (51%), Gaps = 20/339 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V D T G++ +S + LF+P ++ K G + + F K+ L S P SL
Sbjct: 113 VADALKTKGVDFYSYLDQLLFSPGTVLTKTGTYFQV-FSQFRKVCYDRLHRSLP---SLV 168
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
P V + E+P+ G+ + + GE+EA ++L ++ +D + ++
Sbjct: 169 RAPAVQSKLNIDSDEIPS-SVAGFDTPSDTLRALWPAGEAEARRRL-DTFADAQ--IDYY 224
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQL 178
K + D A KP T+ LS YL G +S R QCL Q+ + V+ + +L
Sbjct: 225 KSERDFPA--KPGTSQLSAYLAAGVISPR---QCLHAALQSNQGEFESGKVGAVTWINEL 279
Query: 179 LWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LWR+F+ + G P R + R + + W + + LAAW+EARTG P IDA M QL +
Sbjct: 280 LWREFYKHILVGYPRVSRHRAFRPETEALAWRDAPDELAAWQEARTGLPIIDAAMRQLLE 339
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQ 296
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 340 TGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAP 398
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
Y RI++P+S +K+D G +I+H+LP L + K+ ++ P
Sbjct: 399 YFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKDVHNP 437
>gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
gi|422714588|ref|ZP_16771314.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309A]
gi|422715846|ref|ZP_16772562.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309B]
gi|424676729|ref|ZP_18113600.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV103]
gi|424681453|ref|ZP_18118240.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV116]
gi|424683643|ref|ZP_18120393.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV129]
gi|424686453|ref|ZP_18123121.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV25]
gi|424690275|ref|ZP_18126810.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV31]
gi|424695368|ref|ZP_18131751.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV37]
gi|424696893|ref|ZP_18133234.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV41]
gi|424699721|ref|ZP_18135932.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV62]
gi|424703266|ref|ZP_18139400.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV63]
gi|424707237|ref|ZP_18143221.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV65]
gi|424717102|ref|ZP_18146400.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV68]
gi|424720681|ref|ZP_18149782.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV72]
gi|424724230|ref|ZP_18153179.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV73]
gi|424733819|ref|ZP_18162374.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV81]
gi|424743880|ref|ZP_18172185.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV85]
gi|424750610|ref|ZP_18178674.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV93]
gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309B]
gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309A]
gi|402351160|gb|EJU86052.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV116]
gi|402356349|gb|EJU91083.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV103]
gi|402364402|gb|EJU98838.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV31]
gi|402364641|gb|EJU99076.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV129]
gi|402367307|gb|EJV01648.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV25]
gi|402368545|gb|EJV02858.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV37]
gi|402375650|gb|EJV09630.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV62]
gi|402377222|gb|EJV11133.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV41]
gi|402384835|gb|EJV18376.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV65]
gi|402385271|gb|EJV18811.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV63]
gi|402386450|gb|EJV19956.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV68]
gi|402391149|gb|EJV24465.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV81]
gi|402393152|gb|EJV26382.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV72]
gi|402395537|gb|EJV28639.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV73]
gi|402399794|gb|EJV32657.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV85]
gi|402406588|gb|EJV39138.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV93]
Length = 477
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 183/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
Length = 477
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 183/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYGEQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASAPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
gi|384513279|ref|YP_005708372.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
gi|422692986|ref|ZP_16751001.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
gi|422727086|ref|ZP_16783529.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
gi|430361362|ref|ZP_19426639.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1X]
gi|430370639|ref|ZP_19429164.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis M7]
gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
gi|429512539|gb|ELA02144.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1X]
gi|429515403|gb|ELA04919.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis M7]
Length = 477
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 184/383 (48%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L + ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASMPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|422631808|ref|ZP_16696988.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330941669|gb|EGH44445.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 482
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 183/384 (47%), Gaps = 34/384 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG+ S + LF P I+ K G + + F K+ L + P PV
Sbjct: 113 VQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHPVRTP 171
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
P + + + V+ +L P GE+EA +++ ++ +D E ++ ++
Sbjct: 172 KAQPAQSIKSDAVPD--QVKGFATPSKALRDLWP--AGEAEARRRM-DAFAD-EQISYYK 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+ P+ KP T+ LS YL G +S R + L + V+ + +LLWR
Sbjct: 226 TERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWR 282
Query: 182 DFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + GW
Sbjct: 283 EFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGW 342
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNR 299
MH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y R
Sbjct: 343 MHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFR 401
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RDY 354
I++P+S +++DP G +I+ +LP L DM K+ I++P +IG DY
Sbjct: 402 IFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAADY 449
Query: 355 PAPVVSHDSASKECKRKLGEAYAL 378
P P+V SK R L AL
Sbjct: 450 PKPIV---DLSKSRARALAAFKAL 470
>gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786]
Length = 486
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 179/365 (49%), Gaps = 18/365 (4%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA------GQPLWASSPLPVSLSSL 64
GI+V + + LF P D++ + G+P + ++ + A PL ++P + L
Sbjct: 125 GIDVETFNASLLFEPGDLV-TDSGRPYQVFTAYWRAAMRRGVHAAPL--AAPRRLKGCEL 181
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKP 124
PP E+ + G E + GE A ++LR + + + +
Sbjct: 182 PPRLAQRQVELDALGLAPARPDWAGGLRET--WTCGEDAAHRRLRAFVDSR--LGGYATG 237
Query: 125 KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFF 184
+ P A +T+ LSP+++FG LS R + D + + + + +L WR+F
Sbjct: 238 RDRPGA---ASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAATQADLDTFCRELGWREFC 294
Query: 185 YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
Y + P+ R +PW +D LAAWR TGYP++DA M +L GWMH+
Sbjct: 295 YGQLYRFPDLARRNLRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNR 354
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSP 303
AR A FL + + + W +G F L+D+D A N NW W++ C + Y RI++P
Sbjct: 355 ARMVCASFLVK-HLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNP 413
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
++ GKK+DP+G Y+R ++P L +P I+EPW AP A +G YP P+V+HD+
Sbjct: 414 IAQGKKFDPDGAYVRRWVPELAGLPANAIHEPWAAPAARLAAAGVRLGDTYPLPIVAHDA 473
Query: 364 ASKEC 368
A K
Sbjct: 474 ARKRA 478
>gi|422415100|ref|ZP_16492057.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
Length = 467
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 144/276 (52%), Gaps = 12/276 (4%)
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
++L F GE A +L + KE +A+++K + P+ T+ LS YL+ G +S R
Sbjct: 186 QDLPAFDSGEKAANTRLANFV--KEDLASYDKARDVPAL---DKTSHLSRYLRTGEISIR 240
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND 211
+Q L ++ T + +L WRDF+ + P + I W N+
Sbjct: 241 TVWQALQK-----EEATEGRATFEKELCWRDFYNMIYVSFPKQKNEPIQENYRFIEWENN 295
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
E W+E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F +
Sbjct: 296 REFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 354
Query: 272 LLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
+LID D A N G W W S + Y RI++P + +K+DP+G +IR ++ L+D+P +
Sbjct: 355 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELRDLPDK 414
Query: 331 YIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+I++P T Q I+G+DYP P++ H K
Sbjct: 415 FIHQPEKMSETEQQEHGLILGKDYPLPIIDHKERRK 450
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 17/298 (5%)
Query: 75 ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKP 134
+ E+PT LG+ +SP GE+ A KL + D+ + +++ + P+
Sbjct: 187 VVELPTASYLGFIWNNNLVISP---GEAAAQAKL-ATFCDRT-IDQYQEQRNFPAV---D 238
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ-LLWRDFFYTVAFGTPN 193
T+ LS LKFG + R + + +YQN + + Q L WR+F+ + P+
Sbjct: 239 GTSQLSAALKFGAIGIRTVWDAIATLYQNSPESAQASIQTWQQELAWREFYQHAIYNFPD 298
Query: 194 FDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253
+ K PW+++ E AW E +TGYP +DA M Q+ GWMH+ R VA FL
Sbjct: 299 LAKGAYREAFKDFPWNDNSEHFQAWCEGKTGYPIVDAAMRQMNTIGWMHNRCRMIVASFL 358
Query: 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPN 313
T+ D+ ++W+ G F + LID D + NNG W W + S + RI++P S +K+D +
Sbjct: 359 TK-DLLLNWQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPVRIFNPASQAQKFDLD 417
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRK 371
G+YIRH+LP L + + + PL + +G YPAP+V H+ +E K++
Sbjct: 418 GSYIRHWLPELSSVDTKLLITGNITPLE-----RASLG--YPAPIVDHNQQQREFKQR 468
>gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
Length = 473
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 184/383 (48%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 114 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 171
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 172 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 215
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L + ++ K T +L WRD
Sbjct: 216 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASMPSSLSKET-----FKKELAWRD 267
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 268 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 327
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 328 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 386
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 387 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 446
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 447 ASSKKQTLFLYEASKEIHQEMNN 469
>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
Length = 476
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 139/237 (58%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S + + L + ++ ++ +S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLIN--KSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW ++ELL W++ TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+G YIR ++P L+D+P +YI++PW AP I +A +G YP PVV H +A +
Sbjct: 409 KDGEYIRKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARERA 465
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 175/369 (47%), Gaps = 24/369 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPL--P 58
++K AG+EV S + +L ++ G+P + F + ++ P W PL P
Sbjct: 113 RLKADLRAAGVEVKS-FNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDW-PEPLAAP 170
Query: 59 VSLSSLPPVGDVGYFEI-SEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESI--SDK 115
L + P E +PT + + G ++ P GE+ +LR + +
Sbjct: 171 DRLEAPPTAPASDPLESWGLLPTTPD--WAGGLRQAWQP---GEAAVAARLRAFLEGAAA 225
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY--QNVKKHTSPPVS 173
++ ++P D T+ LSPYL FG +S R + D N +H S
Sbjct: 226 DYAEGRDRPGSD-------GTSRLSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAES 278
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
+ +L WR+F Y + + P N + PW D L +W+ RTGYP +DA M
Sbjct: 279 FLRELGWREFCYNLLYHFPKLPERPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMR 338
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSS 292
QL GWMH+ R V FL + + + W++G+ F L+D+D A N W W++ C +
Sbjct: 339 QLWTTGWMHNRVRMIVGSFLVK-HLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGA 397
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
Y R+++PV G K+DP+G Y+R ++P L +P I++PWTA RA +G
Sbjct: 398 DAAPYFRVFNPVLQGGKFDPDGRYVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGT 457
Query: 353 DYPAPVVSH 361
DYPAP + H
Sbjct: 458 DYPAPCIEH 466
>gi|407776584|ref|ZP_11123857.1| DNA photolyase [Nitratireductor pacificus pht-3B]
gi|407301875|gb|EKF20994.1| DNA photolyase [Nitratireductor pacificus pht-3B]
Length = 487
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 129/232 (55%), Gaps = 5/232 (2%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T+ LSP+L G +S + L ++ + +L WR+F + + F P+
Sbjct: 247 TSSLSPHLAHGEISPWQIWSALEAGHELPAGDAQ---TFRKELGWREFCWHLLFHNPDLA 303
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
NR PW DD+ L AW+ +TGYP +DA M QL + GWMH+ AR VA FL +
Sbjct: 304 TRNFNRDFDAFPWQRDDKALRAWQRGQTGYPVVDAAMRQLWQTGWMHNRARMIVASFLVK 363
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNG 314
D+ + W G + F L+D+D A N NW W++ S + + RI++PV G+K+DP+G
Sbjct: 364 -DLRLDWRSGEEWFWDTLVDADPASNPANWQWVAGSGADAAPFFRIFNPVLQGEKFDPDG 422
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
Y+ F+P L+++PK YI++PW A + A +G YPAP+V H +A +
Sbjct: 423 AYVHRFVPELRNLPKRYIHKPWNATAAALSEAGIRLGETYPAPMVDHGTARQ 474
>gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
gi|422722487|ref|ZP_16779037.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
gi|424673186|ref|ZP_18110129.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
599]
gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
gi|402352996|gb|EJU87832.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
599]
Length = 477
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 184/383 (48%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I+ K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFINQK--LRSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASAPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|146282327|ref|YP_001172480.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
gi|145570532|gb|ABP79638.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
Length = 476
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 179/363 (49%), Gaps = 39/363 (10%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWA-----SSPLPVSLSS 63
AGI+V + LF P ++ ++GG + K+ GQ A S LP ++
Sbjct: 120 AAGIDVRRYLDQLLFAPGSVLTQSGG--------YFKVFGQFRRACLARLSMSLPACVA- 170
Query: 64 LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEK 123
PP S+VP E G+ + + GE+ A +L I D + + +
Sbjct: 171 -PPAPQHPMTVASDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIGDD--LHQYHQ 227
Query: 124 PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN----VKKHTSPPVSLVGQLL 179
+ P+ +P T+ LS YL G +S R QCL + + ++ + + +LL
Sbjct: 228 RRDLPA---EPGTSQLSAYLAAGVISIR---QCLHAAVASNRGELDSGSAGATTWINELL 281
Query: 180 WRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F+ + G P + R + +PW + L AW+E RTG+P IDA M QLR+
Sbjct: 282 WREFYKHILVGYPRVSMHRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRET 341
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQY 297
GWMH+ R A FL++ ++ + W +G F R LID D A NNG W W S + Y
Sbjct: 342 GWMHNRLRMVTAMFLSK-NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPY 400
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR-DYPA 356
R+++P+S +++DP+G ++R +LP L+ + K I+ P T + + G+ DYPA
Sbjct: 401 FRLFNPISQSQRFDPDGQFLRRWLPELQGLGKREIHNPST--------QRSLFGKADYPA 452
Query: 357 PVV 359
P++
Sbjct: 453 PII 455
>gi|424070820|ref|ZP_17808252.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|407999903|gb|EKG40273.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
Length = 482
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 181/377 (48%), Gaps = 34/377 (9%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
AG+ S + LF P I+ K G + + F K+ L + P PV P
Sbjct: 120 AGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
+ + + V+ +L P GE+EA +++ ++ +D E ++ ++ + P+
Sbjct: 179 IKSDAVPD--QVKGFATPSKALRDLWP--AGEAEARRRM-DAFAD-EQISYYKTERDFPA 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVA 188
KP T+ LS YL G +S R + L + V+ + +LLWR+F+
Sbjct: 233 ---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTL 289
Query: 189 FGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARH 247
G P R + R + + W + E L AW+EARTG P IDA M QL + GWMH+ R
Sbjct: 290 VGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRM 349
Query: 248 CVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSF 306
VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P+S
Sbjct: 350 VVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RDYPAPVVSH 361
+++DP G +I+ +LP L DM K+ I++P +IG DYP P+V
Sbjct: 409 SERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAADYPKPIV-- 454
Query: 362 DSASKECKRKLGEAYAL 378
SK R L AL
Sbjct: 455 -DLSKSRARALAAFKAL 470
>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
Length = 475
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 168/368 (45%), Gaps = 14/368 (3%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVSL 61
+K + GIEV S L P + + G P + F + LA P A P P
Sbjct: 109 LKSALTAQGIEVESFNGSLLAEPWQV-RTQSGDPYKVFTPFWRSLAQMPFPAPHPAPKKC 167
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
+ L P+ S P+ + + G + P GE A +L I D + +
Sbjct: 168 AGLSPLPSDDLASWSLRPSKPD--WAGGLRATWQP---GERAAQSRLAAFIDDA--MVGY 220
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+ + P+A T+ LSP+L +G +S + + + + +L WR
Sbjct: 221 REARDIPAAE---GTSRLSPHLHWGEVSPHRIWSAVEAATAAHPSGAEAGRAFLRELAWR 277
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DF + + F P+ R PW D AW + TGYP +DA M QL + GWM
Sbjct: 278 DFAHHLLFHWPDIARENWKSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWM 337
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYNRI 300
H+ R A FL + + V W +G + F+ L+D+D A+N +W W++ S Y RI
Sbjct: 338 HNRVRMIAASFLVK-HLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRI 396
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++PV G+K+D +G Y+R F+P L + +I++PW AP ++A +GR YP P+V
Sbjct: 397 FNPVLQGEKFDGDGAYVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVD 456
Query: 361 HDSASKEC 368
H A
Sbjct: 457 HGHARARA 464
>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
Length = 476
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 139/237 (58%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S + + L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW+ ++ELL W++ TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+D+P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERA 465
>gi|423655980|ref|ZP_17631279.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
gi|401292211|gb|EJR97875.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
Length = 476
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 139/237 (58%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S + + L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+D+P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERA 465
>gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
Length = 477
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 183/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEKTARRCLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628269|ref|ZP_17604018.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401270133|gb|EJR76158.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
Length = 476
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 139/237 (58%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S + + L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+D+P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERA 465
>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
Length = 521
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 184/378 (48%), Gaps = 23/378 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSPL 57
VKD + ++V + TL++ D+ + + P Y F K +P++ P
Sbjct: 122 VKDVCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVF---PT 178
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISDK 115
P L LP E +PT E+L + S F GGES+ L +L+ D
Sbjct: 179 PEQLKPLP-----SGLEEGAIPTAEDLQQTEPLTDPRSAFPCSGGESQVLARLKHYFWDT 233
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+ VA +++ + +T +P+L GC+S RY Y + Y+ + ++
Sbjct: 234 DAVATYKETRNGLIGV--DYSTKFAPWLAMGCISPRYIYHQIKQ-YEKERTANQSTYWVI 290
Query: 176 GQLLWRDFF--YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
+LLWRD+F V +G F ++KG + K IPW D +L AW+E +TG P++DA M
Sbjct: 291 FELLWRDYFKFVGVKYGNRLF-QVKGLQ-DKSIPWKKDMKLFNAWKEGQTGVPFVDANMR 348
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
+L G+M + R VA FLT+ D+ + W G + F+ LLID D N GNWL+ +
Sbjct: 349 ELAMTGFMSNRGRQNVASFLTK-DLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGN 407
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
+ NR ++ + G YD NG+Y+R ++P L+ + ++ PWT + A +G
Sbjct: 408 DPRENRKFNMIKQGLDYDSNGDYVRQWVPELQGIKGADVHTPWTLSTAALSHAHVSLGET 467
Query: 354 YPAPVVSHDSASKECKRK 371
YP P+V S+ +K
Sbjct: 468 YPNPIVIAPEWSRHVNKK 485
>gi|422665171|ref|ZP_16725043.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330975589|gb|EGH75655.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 482
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 183/384 (47%), Gaps = 34/384 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG+ S + LF P I+ K G + + F K+ L + P PV
Sbjct: 113 VQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHPVRTP 171
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
P + + + V+ +L P GE+EA +++ ++ +D E ++ ++
Sbjct: 172 KAQPAQSIKSDAVPD--QVKGFATPSKTLRDLWP--AGEAEARRRM-DAFAD-EQISYYK 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+ P+ KP T+ LS YL G +S R + L + V+ + +LLWR
Sbjct: 226 TERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWR 282
Query: 182 DFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + GW
Sbjct: 283 EFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGW 342
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNR 299
MH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y R
Sbjct: 343 MHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFR 401
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RDY 354
I++P+S +++DP G +I+ +LP L DM K+ I++P +IG DY
Sbjct: 402 IFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAADY 449
Query: 355 PAPVVSHDSASKECKRKLGEAYAL 378
P P+V SK R L AL
Sbjct: 450 PKPIV---DLSKSRARALAAFKAL 470
>gi|357384343|ref|YP_004899067.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
gi|351592980|gb|AEQ51317.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
Length = 466
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 175/361 (48%), Gaps = 25/361 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAS---SPLPV 59
+K G EV S + L P DI K G Y F P W + P+P
Sbjct: 112 IKTALRADGAEVASFNASLLVEPWDIATKQG----TPYGVF-----TPFWTALREKPIP- 161
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
P+G + E P ++ + L + GE A + L + + D +A
Sbjct: 162 -----DPIGRIEKHEAISAPALDFGKRPAWAGGILERWAIGEDAAKRVLSDFLDDL--LA 214
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
++ + P K T+ +SP+L+FG + R + + + + S + ++
Sbjct: 215 DYPNDRDLPR---KDGTSRMSPHLRFGEIGPRQIWFAVRHLIDSKPSMASAGEKFLSEVA 271
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+F Y + + + R +I W +D + L AW++ +TG P +DA M QL + G
Sbjct: 272 WREFSYHLLYHRDDIARHSMQERFDEIEWRSDSKALKAWQKGQTGIPIVDAGMRQLWQTG 331
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R A LT+ ++ + W KG + F L+D+D A N +W W++ S + Y
Sbjct: 332 WMHNRVRMLTASLLTK-NLLIDWRKGENWFWDTLVDADPANNPASWQWVAGSGADAAPYF 390
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++PV+ G+K+DP+G+Y+R ++P L D+P +++++PW A I +A G YPAP+
Sbjct: 391 RIFNPVTQGEKFDPHGDYVRQWVPELSDVPDKWVHKPWAADPEILNKASLKSGTAYPAPI 450
Query: 359 V 359
V
Sbjct: 451 V 451
>gi|386020605|ref|YP_005938629.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
Length = 476
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 180/363 (49%), Gaps = 39/363 (10%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWA-----SSPLPVSLSS 63
AGI+V + LF P ++ ++GG + K+ GQ A S LP ++
Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGG--------YFKVFGQFRRACLARLSMSLPACVA- 170
Query: 64 LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEK 123
PP S+VP E G+ + + GE+ A +L I D + + +
Sbjct: 171 -PPAPQQPMTVTSDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIEDD--LHQYHQ 227
Query: 124 PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCL-TDVYQN---VKKHTSPPVSLVGQLL 179
+ P+ +P T+ LS YL G +S R QCL V N + ++ + + +LL
Sbjct: 228 RRDLPA---EPGTSQLSAYLAAGVISIR---QCLHAAVASNRGELDSGSAGATTWINELL 281
Query: 180 WRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F+ + G P + R + +PW + L AW+E RTG+P IDA M QLR+
Sbjct: 282 WREFYKHILVGYPRVSMHRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRET 341
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQY 297
GWMH+ R A FL++ ++ + W +G F R LID D A NNG W W S + Y
Sbjct: 342 GWMHNRLRMVTAMFLSK-NLLIDWREGERWFMRNLIDGDLAANNGGWQWSASTGTDSVPY 400
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR-DYPA 356
R+++P+S +++DP+G ++R +LP L+ + K I+ P + + + G+ DYPA
Sbjct: 401 FRLFNPISQSQRFDPDGQFLRRWLPELQGLGKREIHNP--------SAQRSLFGKADYPA 452
Query: 357 PVV 359
P++
Sbjct: 453 PII 455
>gi|423649036|ref|ZP_17624606.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
gi|401284534|gb|EJR90400.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
Length = 476
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 135/235 (57%), Gaps = 4/235 (1%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
++L+PYL FG +S + + L + + S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
N+ + PW ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPN 313
+ + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D N
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
G YIR ++P L+D+P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERA 465
>gi|423641840|ref|ZP_17617458.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
gi|401277790|gb|EJR83729.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
Length = 476
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 135/235 (57%), Gaps = 4/235 (1%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
++L+PYL FG +S + + L + + S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
N+ + PW ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPN 313
+ + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D N
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
G YIR ++P L+D+P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERA 465
>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
Length = 476
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 135/235 (57%), Gaps = 4/235 (1%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
++L+PYL FG +S + + L + + S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
N+ + PW ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPN 313
+ + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D N
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
G YIR ++P L+D+P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERA 465
>gi|399519482|ref|ZP_10760277.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399112578|emb|CCH36835.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 478
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 164/337 (48%), Gaps = 14/337 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V Y I S + LF P ++ ++GG + Y F K+ + L + P ++
Sbjct: 113 QVCAYLGQQAIAWHSHLDQLLFKPGSVLTRSGGYFQV-YSQFRKVCYERLHTALPALIAP 171
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
+G I E T E L P GE AL++L+ +E V +
Sbjct: 172 PKAQTPLAIGSEAIPE--TAEGFATPSASLRLLWP--AGEEAALQRLQRF--SEEQVTYY 225
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQLLW 180
+ + P+ KP T+ LS YL G +S R Q +P V + + +LLW
Sbjct: 226 KDERDFPA---KPGTSQLSAYLAAGVVSPRQCLHAALAANQGEFDSGNPGVITWINELLW 282
Query: 181 RDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R+ + +PW + E LAAW+E RTG P IDA M QL + G
Sbjct: 283 REFYKHTLVGYPRVSRHRAFRLETEAVPWRHAPEDLAAWQEGRTGLPIIDAAMRQLLETG 342
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + Y
Sbjct: 343 WMHNRLRMIVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYF 401
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
RI++P+S +K+DP G +IR ++P L + K I++P
Sbjct: 402 RIFNPISQSQKFDPEGQFIRQWVPELAGLNKRDIHDP 438
>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
Length = 476
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 135/235 (57%), Gaps = 4/235 (1%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTD--VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
++L+PYL FG +S + + L + + S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
N+ + PW ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPN 313
+ + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D N
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
G YIR ++P L+D+P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERA 465
>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
Length = 471
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 164/321 (51%), Gaps = 16/321 (4%)
Query: 56 PLPV-SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
PLPV + P+ G I E+ +E+ + + + S + GE A +L D
Sbjct: 163 PLPVPDQLRIHPLNTEGALSIDELNLLED---RPWSAQVSSHWEHGEKAAQNRLYAFFED 219
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+++++ + P+ T+ LSP+L FG +S + L + T
Sbjct: 220 G--LSDYKDGRNFPAL---THTSRLSPHLHFGEISPNQIWWVL-----GSHEETRDIDHF 269
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+L WR+F Y++ F P+ + N PW +DD+ L AW++ +TG P +DA M +
Sbjct: 270 RSELGWREFSYSLLFNNPSLPKSNLNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRE 329
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSF 293
L + G+MH+ R V FL + ++ + W G + F L+D+D A N+ +W W++ C +
Sbjct: 330 LWQTGYMHNRLRMIVGSFLVK-NLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGAD 388
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y RI++P+ G+K+D +G+Y R FLP LKD+P +Y+++PW AP + A +G +
Sbjct: 389 AAPYFRIFNPILQGEKFDAHGDYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGEN 448
Query: 354 YPAPVVSHDSASKECKRKLGE 374
YP P+V + E R E
Sbjct: 449 YPLPIVDLKKSRDEALRAFEE 469
>gi|407940619|ref|YP_006856260.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
gi|407898413|gb|AFU47622.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
Length = 496
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 156/314 (49%), Gaps = 25/314 (7%)
Query: 78 VPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
VPT+++LG++ +L G G + I E NF KG
Sbjct: 201 VPTLQDLGFEPTDLSQLRLPTGARGAQQLFDDFLGRIERYEDTRNFPAVKG--------- 251
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
+ LS +L+FG +S R + ++ + + + + +L+WRDF++ + P+
Sbjct: 252 PSYLSVHLRFGTISPRLLART---AHRLMLEGNPGATTWLSELIWRDFYFQILHHHPHVV 308
Query: 196 RMKGNRICKQIPWSND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
I W D L AAW E RTGYP +DA M Q+ + G+MH+ R VA F
Sbjct: 309 GQSFKPAYDAIAWETGPEADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASF 368
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + D+ + W +G F L D D A NNG W W S S Q Y RI++PVS +K+D
Sbjct: 369 LVK-DLGIDWRRGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFD 427
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTA-PLTIQTRAKCIIGRDYPAPVVSHDSASKECKR 370
P G +IR +LP+L +P + ++ PW A PL +Q A +G YP PVV HD+A ++
Sbjct: 428 PEGKFIRRYLPLLAALPTKALHAPWLARPLELQ-EAGVRLGDTYPLPVVEHDAA----RQ 482
Query: 371 KLGEAYALNQKLNG 384
+ E YA+ + G
Sbjct: 483 RTLERYAVVKTAGG 496
>gi|416014635|ref|ZP_11562385.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. B076]
gi|416029112|ref|ZP_11572001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406636|ref|ZP_16483660.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 482
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 182/380 (47%), Gaps = 26/380 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG++V S + LF P I+ K G + + F K+ + + P PV
Sbjct: 113 VQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYNRMHQAMPQPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + +P VE +L P GE+EA +++ + +D + ++ +
Sbjct: 171 --PKAQQSLSIKSDSIPDQVEGFATPSKALRDLWP--AGEAEARRRM-ATFADAQ-ISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P+S +++DP G +I+ +LP L D+ K+ I++P + DYP P+
Sbjct: 401 RIFNPLSQSERFDPEGLFIKRWLPELADLNKKQIHDP-------ASIGGLFGAADYPKPI 453
Query: 359 VSHDSASKECKRKLGEAYAL 378
V SK R L AL
Sbjct: 454 V---DLSKSRARALAAFKAL 470
>gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
Length = 477
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 183/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G + + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSRYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYGEQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 12/229 (5%)
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
AT+ LSP+L+FG LS R + TD + + + +L+WRDF++ V + P
Sbjct: 236 ATSRLSPHLRFGTLSVRQLVRLATDAGHEGAQ------AWLNELVWRDFYHQVLWHRPQL 289
Query: 195 DRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253
+ + + Q+ W + + AAW E RTGYP +DA M QLR+ GWMH+ R A FL
Sbjct: 290 AQGHAFKPVYDQLDWPGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFL 349
Query: 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDP 312
+ D+ + W G F L+D D+A NNG W W + + Q Y RI++PVS +K+DP
Sbjct: 350 AK-DLLLDWRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDP 408
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+G++IRHF+P L + E I+ PW L + G DYP P+V H
Sbjct: 409 DGHFIRHFVPELARLDAEAIHAPW---LARRLPPGFSPGHDYPLPLVDH 454
>gi|424066173|ref|ZP_17803645.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|408002576|gb|EKG42820.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 482
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 180/377 (47%), Gaps = 34/377 (9%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
AG+ S + LF P I+ K G + + F K+ L + P PV P
Sbjct: 120 AGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
+ + + V +L P GE+EA +++ ++ +D E ++ ++ + P+
Sbjct: 179 IKSDTVPD--QVNGFATPSKALRDLWP--AGEAEARRRM-DAFAD-EQISYYKTERDFPA 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVA 188
KP T+ LS YL G +S R + L + V+ + +LLWR+F+
Sbjct: 233 ---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTL 289
Query: 189 FGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARH 247
G P R + R + + W + E L AW+EARTG P IDA M QL + GWMH+ R
Sbjct: 290 VGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRM 349
Query: 248 CVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSF 306
VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P+S
Sbjct: 350 VVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RDYPAPVVSH 361
+++DP G +I+ +LP L DM K+ I++P +IG DYP P+V
Sbjct: 409 SERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAADYPKPIV-- 454
Query: 362 DSASKECKRKLGEAYAL 378
SK R L AL
Sbjct: 455 -DLSKSRARALAAFKAL 470
>gi|422808697|ref|ZP_16857108.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
gi|378752311|gb|EHY62896.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 467
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 140/275 (50%), Gaps = 12/275 (4%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+L GE A +L I K +A+++K + P T+ LS YL+ G +S R
Sbjct: 187 DLPILDSGERAANTRLANFI--KHDIADYDKARDFPEL---DKTSHLSRYLRTGEISIRT 241
Query: 153 FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
+Q L + + T + +L WRDF+ + PN + I W N+
Sbjct: 242 IWQALQET-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNR 296
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
E AW+E TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++
Sbjct: 297 EFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQM 355
Query: 273 LIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
LID D A N G W W S + Y RI++P + +K+DP G +IR ++ L ++P +Y
Sbjct: 356 LIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQAQKFDPTGKFIRKYVKELANLPDKY 415
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
I++P T+Q I+G+DYP P+V H K
Sbjct: 416 IHQPEKMSETVQKEHGLILGKDYPFPLVDHKERRK 450
>gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TUSoD Ef11]
gi|422733543|ref|ZP_16789845.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
gi|422739032|ref|ZP_16794215.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
gi|428767034|ref|YP_007153145.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis str.
Symbioflor 1]
gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TUSoD Ef11]
gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
gi|427185207|emb|CCO72431.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis str.
Symbioflor 1]
Length = 477
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|407363810|ref|ZP_11110342.1| deoxyribodipyrimidine photolyase [Pseudomonas mandelii JR-1]
Length = 481
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 31/374 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + GI+ FS + LFNP ++ K G + + F K+ + L S P V+
Sbjct: 113 VAETLKAHGIDFFSYLDQLLFNPGTVLTKTGTYFQV-FSQFRKVCYERLHRSLPGRVAK- 170
Query: 63 SLPPVGDVGYFEISEVPT-VEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P V D ++P+ V+ +L P GE+EA ++L ++ +D + ++
Sbjct: 171 --PAVQDPLPISSDDIPSSVKGFDMPSESLRQLWP--AGEAEAQRRL-DTFADAQ--IDY 223
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCL-TDVYQNVKKHTSPPVSLV---GQ 177
K + D A KP T+ LS YL G +S R QCL ++ N + S V V +
Sbjct: 224 YKSERDFPA--KPGTSQLSAYLAAGVISPR---QCLHAALHSNQGEFESGKVGAVTWINE 278
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ + G P R + R + + W + E L AW++ARTG P IDA M QL
Sbjct: 279 LLWREFYKHILVGYPRVSRHRAFRPETEALAWRDAPEELLAWQQARTGLPIIDAAMRQLL 338
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFY 295
+ GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 339 ETGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSA 397
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDY 354
Y RI++P+S +K+D G +I+H+LP L + K+ ++ P + G DY
Sbjct: 398 PYFRIFNPLSQSEKFDAEGVFIKHWLPELAGLNKKDVHNP--------ANVGGLFGVADY 449
Query: 355 PAPVVSHDSASKEC 368
P+P+V+ ++ +
Sbjct: 450 PSPIVNLSTSRQRA 463
>gi|398854298|ref|ZP_10610868.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM80]
gi|398236390|gb|EJN22175.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM80]
Length = 481
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 186/372 (50%), Gaps = 30/372 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + GIE S + LF P ++ K + + F K+ + L S P +L
Sbjct: 113 VAEILRAEGIEFHSYLDQLLFKPGTVLTKTDTYFKV-FSQFRKVCYERLHRSMP---ALV 168
Query: 63 SLPPVGDVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P G +I P + + G+ + + + GE EA ++L ++ +D + ++
Sbjct: 169 KAP--GKQAKLKIDSDPIPDSVKGFATPSESLQALWPAGEKEARRRL-DTFADAQ--IDY 223
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQ 177
K + D A KP T+ LS YL G +S R QCL Q+ + V+ + +
Sbjct: 224 YKSERDFPA--KPGTSQLSAYLAAGVISPR---QCLHTALQSNQGEFESGKVGAVTWINE 278
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ + G P R + R + + W + E LAAW+EARTG P IDA M QL
Sbjct: 279 LLWREFYKHILVGYPRVSRHRAFRPETEALAWRDAPEELAAWQEARTGLPIIDAAMRQLL 338
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFY 295
+ GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 339 ETGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSA 397
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++P+S +K+D G +I+H+LP L + K+ I+ P + DYP
Sbjct: 398 PYFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKQIHNP-------ASLGGLFGVADYP 450
Query: 356 APVVSHDSASKE 367
+P+V+ SAS+E
Sbjct: 451 SPIVNL-SASRE 461
>gi|422412010|ref|ZP_16488969.1| deoxyribodipyrimidine photo-lyase, partial [Listeria innocua FSL
S4-378]
gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
Length = 302
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 144/276 (52%), Gaps = 12/276 (4%)
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
++L F GE A +L + KE +A+++K + P+ T+ LS YL+ G +S R
Sbjct: 21 QDLPAFDSGEKAANTRLANFV--KEDLADYDKARDVPAL---DKTSHLSRYLRTGEISIR 75
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND 211
+Q L ++ T + +L WRDF+ + P + I W N+
Sbjct: 76 TVWQAL-----QKEEATEGRATFEKELCWRDFYNMIYVSFPKQKNEPIQENYRFIEWENN 130
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
E W++ +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F +
Sbjct: 131 REFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 189
Query: 272 LLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
+LID D A N G W W S + Y RI++P + +K+DP+G +IR ++ L+D+P +
Sbjct: 190 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELRDLPDK 249
Query: 331 YIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+I++P T Q I+G+DYP P++ H K
Sbjct: 250 FIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRK 285
>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
Length = 518
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 151/301 (50%), Gaps = 34/301 (11%)
Query: 78 VPTVEELGYKGYGQEEL---SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKP 134
P +E +G+ E+ S GG++ L + E + D +F +G
Sbjct: 207 TPALEAMGFARTNLSEIALPSGMSGGQT-LLDEFEERMDDYHARRDFPAVRG-------- 257
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV------- 187
+ LS +L+FG +S R + + + + + + +L+WRDF++ +
Sbjct: 258 -PSYLSTHLRFGTVSIR---TLAARAHAAMLRGSRGAATWLSELVWRDFYFMILHHRPDL 313
Query: 188 ---AFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
A P FDR++ + D AW+ ARTGYP +DA M+Q+ + G+MH+
Sbjct: 314 ADGAAFHPEFDRIR------WVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNR 367
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSP 303
R A FL + D+ + W +G F +L D D+A NNG W W + S Q + RI++P
Sbjct: 368 LRMVAASFLIK-DLGIDWRRGEQYFADVLNDFDFAANNGGWQWAASSGCDAQPWFRIFNP 426
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
V+ +K+DP G +IR +LP L +P +YI+ PWTAP + A ++G YP P+V H +
Sbjct: 427 VTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAA 486
Query: 364 A 364
A
Sbjct: 487 A 487
>gi|422728872|ref|ZP_16785278.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
Length = 477
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYGEQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R Q L ++ K T +L WRD
Sbjct: 220 NNRDFP---YQDQTSHLSTFLRTGELSIRTIRQELASAPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 482
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 182/380 (47%), Gaps = 26/380 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG++V S + LF P I+ K G + + F K+ + + P PV
Sbjct: 113 VQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYNRMHQAMPQPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + +P VE +L P GE+EA +++ + +D + ++ +
Sbjct: 171 --PKAQQSLSIKSDSIPDQVEGFATPSKALRDLWP--AGEAEARRRM-ATFADAQ-ISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWHEGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P+S +++DP G +I+ +LP L D+ K+ I++P + DYP P+
Sbjct: 401 RIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASIGGLFGAADYPKPI 453
Query: 359 VSHDSASKECKRKLGEAYAL 378
V SK R L AL
Sbjct: 454 V---DLSKSRARALAAFKAL 470
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 184/376 (48%), Gaps = 29/376 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF---LKLAGQPLWA-SSPL 57
++K IE S L P+ ++ NG P Y F L+ G+P +P
Sbjct: 116 RIKHELEKQAIEARSFGGQLLHEPSRLMTGNG-TPYRVYTPFWRALEGGGEPEPPLDAPA 174
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ L+S P +G +++ +PT + + + + + GE A ++L + D
Sbjct: 175 KLRLASQPKSEVLGSWKL--LPTKPD-----WAGDFVDLWTPGEEGAQQRLHVFVEDA-- 225
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
+ +++ + P+ +PAT++LSP+L G +S + + Q V + V +
Sbjct: 226 LEGYKENRDYPA---RPATSMLSPHLALGEISPARIWDATRGLSQRVP--AADIVHFREE 280
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
+ WR+F Y + F P N W N+ AWR TGYP +DA M QL +
Sbjct: 281 IAWREFSYHLLFHFPRLASANWNDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWR 340
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CSS 292
GWMH+ R VA FL + D+ + W +G F L+D+D A N +W W++ S
Sbjct: 341 HGWMHNRVRMIVASFLIK-DLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASP 399
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
FF RI++PV G+K+DP+G+Y+R ++P L+++ +YI+ P+ AP ++ A +G+
Sbjct: 400 FF----RIFNPVLQGEKFDPDGDYVRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQ 455
Query: 353 DYPAPVVSHDSASKEC 368
YP P+V H SA
Sbjct: 456 TYPKPIVDHASARNRA 471
>gi|374292340|ref|YP_005039375.1| deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
gi|357424279|emb|CBS87146.1| Deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
Length = 494
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 7/266 (2%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+ AL L + + E+ + D + T+ LSPYL FG + R +
Sbjct: 216 GETAALSHLADFLDGPVGAYATERDRPD-----RDGTSALSPYLAFGEIGPRQVWHAARH 270
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ S + ++ WR+F Y + P + PW D L AW+
Sbjct: 271 AADARPELAPGIDSFLREVGWREFQYHLLHHAPELPDRPLDPRFADFPWREDAAGLLAWQ 330
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
RTGYP +DA M QL + GWMH+ R VA FL + D+ + W++G F L+D+D A
Sbjct: 331 RGRTGYPIVDAGMRQLWETGWMHNRVRMIVASFLVK-DLLLPWQEGERWFWDTLVDADLA 389
Query: 280 INNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N GNW W++ C + + R+++PV G+K+DP G+Y+R ++P L +P +I++PW A
Sbjct: 390 QNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFDPEGDYVRRYVPELDRLPPRWIHQPWAA 449
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSA 364
P + +A +G DYP P++ H A
Sbjct: 450 PTELLRQAGVRLGDDYPRPIIDHGVA 475
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 187/364 (51%), Gaps = 19/364 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPL--TYQSFLKLAGQPLWASSPLPV 59
+++ + GIE S TLF+P + P + ++ ++ + +P A P P
Sbjct: 115 RLRSALADLGIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPK-APFPTPQ 173
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGY--GQEELSPFRGGESEALKKLRESISDKEW 117
SLS+LP + E+P +E+ G + F GGE+ AL +L++ I +++
Sbjct: 174 SLSTLPDIAP------GELPQLEDWGLSSPEPDARAMIQFSGGETAALARLQDYIWEQDR 227
Query: 118 VANFEKPKGDPSAYLKPA-TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ +++ + + L+P +T SP+L GC+S RY +Q + Q+ K+ S L+
Sbjct: 228 LKRYKETR---NGMLQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDRVKNNST-YWLIF 283
Query: 177 QLLWRDFF-YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
+L+WRD+F + A R+ G + +PW ++ E W+ +TG+P IDA M +L
Sbjct: 284 ELIWRDYFRFICAKHGKRVFRVSGLQGLA-LPWQDNRETFEKWQTGQTGFPLIDANMREL 342
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
G+M + R VA FLT+ ++ ++W+ G + F+ LID D N GNW + +
Sbjct: 343 AATGFMSNRGRQNVASFLTK-NLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDA 401
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
+ R ++ V K YDP G+Y+RH+LP LKD+P + PW Q IG+DYP
Sbjct: 402 RGFRFFNIVKQAKDYDPQGDYVRHWLPELKDVPGGQVQTPWQLTALEQEMFGLTIGKDYP 461
Query: 356 APVV 359
P+V
Sbjct: 462 EPMV 465
>gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584088|ref|ZP_16659203.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 482
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 182/380 (47%), Gaps = 26/380 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG++V S + LF P I+ K G + + F K+ + + P PV
Sbjct: 113 VQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYNRMHQAMPQPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + +P VE +L P GE+EA +++ + +D + ++ +
Sbjct: 171 --PKAQQSLSIKSDSIPDQVEGFATPSKALRDLWP--AGEAEARRRM-ATFADAQ-ISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P+S +++DP G +I+ +LP L D+ K+ I++P + DYP P+
Sbjct: 401 RIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASIGGLFGAADYPKPI 453
Query: 359 VSHDSASKECKRKLGEAYAL 378
V SK R L AL
Sbjct: 454 V---DLSKSRARALAAFKAL 470
>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
Length = 482
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 182/383 (47%), Gaps = 46/383 (12%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS-SLPPVGD 69
GI + + + H L A ++ GG+ + +G P +P +L S+ P
Sbjct: 110 GISIDAHIEHELEKQAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALERSIEP--- 166
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSPFR-----------------GGESEALKKLRESI 112
E ++P+ +L K G E+L ++ GE A +KLR I
Sbjct: 167 ----EPLDIPSKLQLASKLPGSEKLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFI 222
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH--TSP 170
D+ + +++ + P+ KPAT++LSP+L G +S + D + + KH +
Sbjct: 223 EDR--LDGYKENRDYPA---KPATSMLSPHLALGEISPARIW----DATRGLSKHLPAAD 273
Query: 171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
V ++ WRDF Y + P + + W + +E AW TGYP +DA
Sbjct: 274 IVHFRKEIAWRDFSYHLLAHFPRLATANWDDRFDRFEWGSAEEDFNAWSRGMTGYPIVDA 333
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS- 289
M QL ++GWMH+ R A FL + D+ V W G F L+D+D A N +W W++
Sbjct: 334 GMRQLWRYGWMHNRVRMIAASFLIK-DLMVDWRHGEAWFRDTLVDADPANNAASWQWVAG 392
Query: 290 ----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
S FF R+++PV G+K+DP+G+++R +P L+ + +YI+ P+ AP ++
Sbjct: 393 SGADASPFF----RVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAPKSVLDA 448
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A I+G YP PVV H A K
Sbjct: 449 ADVILGETYPEPVVDHAGARKRA 471
>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
Length = 467
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 144/276 (52%), Gaps = 12/276 (4%)
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
++L F GE A +L + KE +A+++K + P+ T+ LS YL+ G +S R
Sbjct: 186 QDLPAFDSGEKAANTRLANFV--KEDLADYDKARDVPAL---DKTSHLSRYLRTGEISIR 240
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND 211
+Q L ++ T + +L WRDF+ + P + I W N+
Sbjct: 241 TVWQALQK-----EEATEGRATFEKELCWRDFYNMIYVSFPKQKNEPIQENYRFIEWENN 295
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
E W++ +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F +
Sbjct: 296 REFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 354
Query: 272 LLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
+LID D A N G W W S + Y RI++P + +K+DP+G +IR ++ L+D+P +
Sbjct: 355 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELRDLPDK 414
Query: 331 YIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+I++P T Q I+G+DYP P++ H K
Sbjct: 415 FIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRK 450
>gi|428773120|ref|YP_007164908.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
gi|428687399|gb|AFZ47259.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
Length = 486
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 170/322 (52%), Gaps = 25/322 (7%)
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEE--LSPFRGGESEALKKLRESISDK 115
P SL LP D+G ++PT+ +LG + + +++ + F GGE+EA+K+L+ + +
Sbjct: 174 PSSLPPLPKNIDIG-----KIPTLSDLGLEEFTKDDRGVLTFMGGETEAIKRLQYYLWET 228
Query: 116 EWVANFEKPK-----GDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP 170
+ ++N++K + GD S+ SP+L GCLS R Y + + Y+ +
Sbjct: 229 DNISNYKKTRNGMLGGDYSS-------KFSPWLAQGCLSPRLIYTEI-EKYEQERVKNDS 280
Query: 171 PVSLVGQLLWRDFF--YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
L+ +LLWRDFF + +G F + I QIPW + L W + +TGYP I
Sbjct: 281 TYWLIFELLWRDFFRFTCLKYGNSVFHKSGLQNI--QIPWQENQNLFELWCQGKTGYPLI 338
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M +L+ G+M + R VA FLT+ ++ ++W+ G + F+ LLID D N GNW +
Sbjct: 339 DANMRELKATGFMSNRGRQNVASFLTK-NLGINWQMGAEWFESLLIDYDVCSNWGNWNYT 397
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
+ + R ++ K YD G+Y+RH+LP + + E I+EPW QT+ K
Sbjct: 398 AGVGNDARGFRYFNIPKQSKDYDYQGDYLRHWLPEIASIKGEKIHEPWKLSKEEQTQFKV 457
Query: 349 IIGRDYPAPVVSHDSASKECKR 370
+G YP P+V + K ++
Sbjct: 458 QLGVTYPRPMVDFFKSVKHNEK 479
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 181/366 (49%), Gaps = 19/366 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSP 56
K+K+ + V + TL++ D+ + G P Y F K +P+ ++
Sbjct: 121 KLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST-- 178
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISD 114
P + S PP G E +PT + LG + S F RGGE+EAL +L+ D
Sbjct: 179 -PEQVKS-PPSG----LEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWD 232
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
VA +++ + +T SP+L GC+S RY Y+ + Y+ + +
Sbjct: 233 TNAVATYKETRNGMIGV--DFSTKFSPWLALGCISPRYIYEQIKK-YEVERTANQSTYWV 289
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +LLWRD+F VA N K +PW+ D ++ AW+E RTG P++DA M +
Sbjct: 290 IFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRE 349
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L G+M + R VA FLT+ D+ + W G + F+ LL+D D N GNWL+ +
Sbjct: 350 LALTGFMSNRGRQNVASFLTK-DLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGND 408
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+ NR ++ + G YD NG+Y+R ++P L+ + ++ PWT + + A+ + + Y
Sbjct: 409 PRENRKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468
Query: 355 PAPVVS 360
P P+++
Sbjct: 469 PCPIIT 474
>gi|422671627|ref|ZP_16730993.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris
str. M302273]
gi|330969367|gb|EGH69433.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris
str. M302273]
Length = 482
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 183/385 (47%), Gaps = 36/385 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG+ S + LF P I+ K G + + F K+ L + P PV
Sbjct: 113 VQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + VP V+ +L P GE+EA +++ ++ +D E ++ +
Sbjct: 171 --PQAQAAQSMKSDAVPEQVKGFATPSKALRDLWP--AGEAEARRRM-DAFAD-EQISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RD 353
RI++P+S +++DP G +I+ +LP L DM K+ I++P +IG D
Sbjct: 401 RIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAAD 448
Query: 354 YPAPVVSHDSASKECKRKLGEAYAL 378
YP P+V SK R L AL
Sbjct: 449 YPKPIV---DLSKSRARALAAFKAL 470
>gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
Length = 469
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 143/259 (55%), Gaps = 21/259 (8%)
Query: 107 KLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ--NV 164
+LR+ D+ V N+ + + P+ + T+VLSPYL G LS+R QC+ +Y+ ++
Sbjct: 212 QLRDFCRDQ--VQNYHQQRDFPA---REGTSVLSPYLAIGALSAR---QCVARLYRESSM 263
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREART 223
+ + +L+WR+F+ + PN + + + ++ W +D+E W E T
Sbjct: 264 GALSEGAQVWLSELIWREFYQHLVAIEPNISKSRDFHEWGSRLEWWDDNEKFQRWCEGTT 323
Query: 224 GYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNG 283
GYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A NNG
Sbjct: 324 GYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSKLIDGDYAANNG 382
Query: 284 NWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTI 342
W W + + Q Y RI++PVS G+K+DP G +IRH++P L+ M YI++PWT P
Sbjct: 383 GWQWCASTGCDGQPYFRIFNPVSQGEKFDPQGEFIRHWVPELRSMSAAYIHQPWTYP--- 439
Query: 343 QTRAKCIIGRDYPAPVVSH 361
+ YPA +V H
Sbjct: 440 -----AVNSVPYPARLVDH 453
>gi|359415637|ref|ZP_09208066.1| deoxyribodipyrimidine photo-lyase [Candidatus Haloredivivus sp.
G17]
gi|358034017|gb|EHK02493.1| deoxyribodipyrimidine photo-lyase [Candidatus Haloredivivus sp.
G17]
Length = 438
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 179/371 (48%), Gaps = 25/371 (6%)
Query: 12 IEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVG 71
IEV T+F +I+ N G P TY + K + P +P V
Sbjct: 84 IEVEDFKDVTMFEKEEILT-NDGTPYKTYTYYAKKWFKKE-KRRPQEPENYEVPTV---- 137
Query: 72 YFEISEVPTVEELGYKGYGQEEL--SPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
E E+P++++LG++ E +P R G + +++ +E I D + D
Sbjct: 138 --ESDEIPSLQKLGFEEPENFEWKWNPAREGGLKRIEEFKEKILDYD---------EDRD 186
Query: 130 AYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVA 188
K +T+ LSP+LKFG +S R F++ +N TS + +L WRDF++ +
Sbjct: 187 YAWKDSTSKLSPHLKFGTVSIRECFWEAERIKARNPNSDTSGVKTWQEELAWRDFYFQML 246
Query: 189 FGTPNFDRMKGNRICKQIPWSNDDELLAAWR---EARTGYPWIDAIMVQLRKWGWMHHLA 245
+ P + I W + ++ W +TG+P++DA M QL+K GWMH+
Sbjct: 247 WNYPESQDKALLEQFRSIDWRSKEDAKGDWEAFINGKTGFPFVDAGMRQLKKTGWMHNRL 306
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPV 304
R V F + D+++ W+ F+ +D++ A G W S + Y R+++P
Sbjct: 307 RMVVTSFACK-DLWLDWKDLHQFFNENFVDAEIASMIGGIQWAYSIGTDAQPYFRVFNPW 365
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+ G+KYDP+G YIR ++P L+D+P EYI+ P Q + CIIG DYP P+V HD
Sbjct: 366 TQGEKYDPDGEYIRKWVPELRDVPDEYIHRPQEMNQIAQKESNCIIGEDYPEPIVDHDEE 425
Query: 365 SKECKRKLGEA 375
K+ + +A
Sbjct: 426 RKKAVERFEDA 436
>gi|452207964|ref|YP_007488086.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
gi|452084064|emb|CCQ37397.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
Length = 466
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 164/324 (50%), Gaps = 20/324 (6%)
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + P D+G +PT+ +LG+ E P G ++ + L ES D +
Sbjct: 156 PRRIPETAPAADLG-VAPGAIPTLSDLGFDAPAAE--VPAAG--TDVARTLLESFLDDD- 209
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS-LVG 176
V +E+ + P+ + T+ LS +LKFG + R + + D ++ V+
Sbjct: 210 VYRYEESRDYPA---EECTSRLSVHLKFGTIGIREVDKRVRDALESASGERRESVAEFRS 266
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QL WR+F+ V + P+ I W NDD+LLAAW+ TGYP +DA M QLR
Sbjct: 267 QLAWREFYTHVLYFNPDVVTTNYTSYENPIEWENDDDLLAAWKRGETGYPIVDAGMRQLR 326
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
G+MH+ R VA FLT+ D+ + W G + F LL+D D A +NG W W + + Q
Sbjct: 327 AEGFMHNRVRMIVASFLTK-DLLIDWRHGYEHFRDLLVDHDTANDNGGWQWAASTGTDSQ 385
Query: 297 -YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++P++ G++YDP+ YIR ++P L+ + + ++ W LT RA +YP
Sbjct: 386 PYFRIFNPMTQGERYDPDAAYIREYVPELEGVDPDVVHS-WHE-LTPTERANA--APEYP 441
Query: 356 APVVSHDSASKEC----KRKLGEA 375
PVV H ++ +R GE+
Sbjct: 442 EPVVEHSERREQALSMFERARGES 465
>gi|398952323|ref|ZP_10674712.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM33]
gi|398155251|gb|EJM43701.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM33]
Length = 480
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 174/352 (49%), Gaps = 21/352 (5%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GIEV + LF P ++ + G + + F K+ + L S P L P
Sbjct: 121 GIEVHRYLDQLLFKPGSVLTRTGTYFQV-FSQFRKVCYERLHHSLP---GLVRAPHKQAP 176
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
VP E G+ G S + GE+EA ++L +S S+ + + +++ + P+
Sbjct: 177 LNIASDAVPLSVE-GFATPGDPLSSLWPAGETEARRRL-DSFSEAQ-IDHYQNERDFPA- 232
Query: 131 YLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAF 189
KP T+ LS YL G +S R + L + + V+ + +LLWR+F+ +
Sbjct: 233 --KPGTSQLSAYLAAGVISPRQCLHAALNSNQGEFESGNTGAVTWINELLWREFYKHILV 290
Query: 190 GTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHC 248
G P R + R + + W N + LAAW++ARTG P IDA M QL GWMH+ R
Sbjct: 291 GYPRVSRHRAFRPETEALAWRNAPDELAAWQQARTGLPIIDAAMRQLLATGWMHNRLRMV 350
Query: 249 VACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFG 307
VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P+S
Sbjct: 351 VAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQS 409
Query: 308 KKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+K+DP G +I+ +LP L + K+ ++ P G DYP+P+V
Sbjct: 410 EKFDPEGVFIKQWLPELAGLNKKDVHNP-------ANLGGLFGGVDYPSPIV 454
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 181/366 (49%), Gaps = 19/366 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSP 56
K+K+ + V + TL++ D+ + G P Y F K +P+ ++
Sbjct: 121 KLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST-- 178
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISD 114
P + S PP G E +PT + LG + S F RGGE+EAL +L+ D
Sbjct: 179 -PEQVKS-PPSG----LEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWD 232
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
VA +++ + +T SP+L GC+S RY Y+ + Y+ + +
Sbjct: 233 TNAVATYKETRNGMIGV--DFSTKFSPWLALGCISPRYIYEQIKK-YEVERTANQSTYWV 289
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +LLWRD+F VA N K +PW+ D ++ AW+E RTG P++DA M +
Sbjct: 290 IFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRE 349
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L G+M + R VA FLT+ D+ + W G + F+ LL+D D N GNWL+ +
Sbjct: 350 LALTGFMSNRGRQNVASFLTK-DLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGND 408
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+ NR ++ + G YD NG+Y+R ++P L+ + ++ PWT + + A+ + + Y
Sbjct: 409 PRENRKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468
Query: 355 PAPVVS 360
P P+++
Sbjct: 469 PCPIIT 474
>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
Length = 425
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 141/273 (51%), Gaps = 28/273 (10%)
Query: 90 GQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
G E FRGGE+ A +++R+ + K V ++ D + T+ LSPYL+FGCLS
Sbjct: 181 GHEPHGLFRGGETVARERMRQWL--KYCVEDYADGHDDLAGN---RTSKLSPYLRFGCLS 235
Query: 150 SRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWS 209
L + +N V QL WRDFF+ V P +R ++ W
Sbjct: 236 P----LELESLSENGD-------DFVRQLCWRDFFHQVTRAFPRINRDDYRPQGQE--WR 282
Query: 210 NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVF 269
+D++ AW+E RTG P +DA M QL GWMH+ AR + FL R + V W G + F
Sbjct: 283 DDEDAAQAWKEGRTGVPIVDAGMRQLLAEGWMHNRARMVTSSFLVR-RLRVDWRVGAEHF 341
Query: 270 DRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPK 329
LL+D D + N GNW W++ + + NRI +PV +++DP G YIR +LP L +P
Sbjct: 342 FDLLLDGDVSNNYGNWQWVAGTGNDTRPNRIVNPVRQARRFDPEGEYIRRYLPELDAVPV 401
Query: 330 EYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
+ IYEPW I R YPAP+VS D
Sbjct: 402 KMIYEPWRMSTGI---------RGYPAPLVSMD 425
>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
Length = 476
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 191/383 (49%), Gaps = 40/383 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT---YQSFLK-LAGQPL------ 51
K+K GI SH L P I +K+ + + Y +F K + +P+
Sbjct: 107 KMKMILEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSI 166
Query: 52 -WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
W SS LP SLS +SE+ + + + + + P G + KK
Sbjct: 167 KWGSS-LPTSLS------------VSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFS 213
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS- 169
S + ++ + + P + ++L+PYL F +S + + L + ++ ++ S
Sbjct: 214 SK-----LVSYSEGRDFPD---QNVHSMLAPYLSFSQISVKLMFHYLIN--KSTERQCSL 263
Query: 170 ---PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
S + QL+WR+F Y + + P N+ + PW+ ++ELL W++ TGYP
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYP 323
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+IDA M +L + G+MH+ AR VA FL + + + W++G F L+D+D A N W
Sbjct: 324 FIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
W++ S Y RI++P++ G+K+D NG YIR ++P L+D+P +YI++PW AP I +
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQK 442
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A +G YP P+V H +A +
Sbjct: 443 ANIKLGNTYPYPIVDHKAARERA 465
>gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|404394317|ref|ZP_10986121.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|348613327|gb|EGY62917.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
Length = 518
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 152/295 (51%), Gaps = 22/295 (7%)
Query: 78 VPTVEELGYKGYGQEEL---SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKP 134
P +E +G+ E+ S GG++ L + E + D +F +G
Sbjct: 207 TPALEAMGFARTNLSEIALPSGMSGGQT-LLDEFEERMDDYHARRDFPAVRG-------- 257
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
+ LS +L+FG +S R + ++ + + + + +L+WRDF++ + P+
Sbjct: 258 -PSYLSTHLRFGTVSIR---TLAARAHASMLRGSRGAATWLSELVWRDFYFMILHHRPDL 313
Query: 195 -DRMKGNRICKQIPWSNDD---ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
D + +I W + D AW+ ARTGYP +DA M+Q+ + G+MH+ R A
Sbjct: 314 ADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLRMVAA 373
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKK 309
FL + D+ + W +G F +L D D++ NNG W W + S Q + RI++PV+ +K
Sbjct: 374 SFLIK-DLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQSEK 432
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+DP G +IR +LP L +P +YI+ PWTAP + A ++G YP P+V H +A
Sbjct: 433 FDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAA 487
>gi|302185909|ref|ZP_07262582.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
642]
Length = 482
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 34/384 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG+ S + LF P I+ K G + + F K+ + + P P+
Sbjct: 113 VQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRMHEAMPHPIRTP 171
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
P + + + V+ +L P GE+EA +++ ++ +D E ++ ++
Sbjct: 172 KAQPAQSIKSDTVPD--QVKGFATPSKALRDLWP--AGEAEARRRM-DAFAD-EQISYYK 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+ P+ KP T+ LS YL G +S R + L + V+ + +LLWR
Sbjct: 226 TERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWR 282
Query: 182 DFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + GW
Sbjct: 283 EFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGW 342
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNR 299
MH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y R
Sbjct: 343 MHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFR 401
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RDY 354
I++P+S +++DP G +I+ +LP L DM K+ I+ P +IG DY
Sbjct: 402 IFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHNP------------SLIGDLFGAADY 449
Query: 355 PAPVVSHDSASKECKRKLGEAYAL 378
P P+V SK R L AL
Sbjct: 450 PKPIV---DLSKSRARALAAFKAL 470
>gi|443645382|ref|ZP_21129232.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
B64]
gi|443285399|gb|ELS44404.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
B64]
Length = 482
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 183/388 (47%), Gaps = 42/388 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG+ S + LF P I+ K G + + F K+ L + P PV
Sbjct: 113 VQKAMEKAGVHFNSYLDQLLFRPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHPVRTP 171
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
P + + + V+ +L P GE+EA +++ ++ +D E ++ ++
Sbjct: 172 QAQPAQSIKSDAVPD--QVKGFATPSKTLRDLWP--AGEAEARRRM-DAFAD-EQISYYK 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+ P+ KP T+ LS YL G +S R + L + V+ + +LLWR
Sbjct: 226 TERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWR 282
Query: 182 DFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + GW
Sbjct: 283 EFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGW 342
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS-----FFY 295
MH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + FF
Sbjct: 343 MHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPFF- 400
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG---- 351
RI++P+S +++DP G +I+ +LP L DM K+ I++P +IG
Sbjct: 401 ---RIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFG 445
Query: 352 -RDYPAPVVSHDSASKECKRKLGEAYAL 378
DYP P+V SK R L AL
Sbjct: 446 AADYPKPIV---DLSKSRARALAAFKAL 470
>gi|407477681|ref|YP_006791558.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium antarcticum B7]
gi|407061760|gb|AFS70950.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium antarcticum B7]
Length = 451
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 97 FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC 156
F+ GE +A K+L + + +A++E+ + PS T+++S YL+ G + R ++
Sbjct: 194 FKPGEEQAKKRLDQFLQTS--LASYEEQRDVPSI---DGTSLMSRYLRTGEIGIRTIFEA 248
Query: 157 LTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLA 216
++ K+ + + + +L+WR+F+YT+ P R+ N I W D++
Sbjct: 249 VSQ-----KEDSKGKQTYITELIWREFYYTILLHYPEAKRLPVNEQYTNIEWEEDEKGFQ 303
Query: 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS 276
AW E +TGYP +DA M QL GWMH+ R VA FLT+ D+ + W+KG F + L+D
Sbjct: 304 AWCEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTK-DLLIDWQKGERYFQQKLVDY 362
Query: 277 DWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
+ A N G W W S + Y R+++P + KK+D +G +IR ++P +K++ +YI+EP
Sbjct: 363 EAASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDKDGTFIRQYVPEIKELSNKYIHEP 422
Query: 336 WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
T Q R Y P+V HD A K
Sbjct: 423 -----TDQQRQ----DHAYLMPIVDHDMARKRA 446
>gi|423099697|ref|ZP_17087404.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
gi|370793782|gb|EHN61607.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
Length = 467
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 144/276 (52%), Gaps = 12/276 (4%)
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
++L F GE A +L + KE +A+++K + P+ T+ LS YL+ G +S R
Sbjct: 186 QDLPAFDSGEKAANTRLANFV--KEDLADYDKARDVPAL---DKTSHLSRYLRTGEISIR 240
Query: 152 YFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND 211
+Q L ++ T + +L WRDF+ + P + I W N+
Sbjct: 241 TVWQALQK-----EEATEGRATFEKELCWRDFYNMIYVSFPKQKNEPIQENYRFIEWENN 295
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
E W++ +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F +
Sbjct: 296 REFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 354
Query: 272 LLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
+LID D A N G W W S + Y RI++P + +K+DP+G +IR ++ L+D+P +
Sbjct: 355 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELQDLPNK 414
Query: 331 YIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+I++P T Q I+G+DYP P++ H K
Sbjct: 415 FIHQPEKMSETEQKEHGLILGKDYPFPIIDHKERRK 450
>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175848|ref|YP_004652658.1| hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480206|emb|CCB86804.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 474
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 133/232 (57%), Gaps = 7/232 (3%)
Query: 134 PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN 193
P + LSPYL FG +S R + ++ + + + P + QL WRDF Y + + P
Sbjct: 234 PGVSRLSPYLHFGEISVRMVWD---EIVKKLGFQEAEPY--LRQLGWRDFAYHLLYHFPK 288
Query: 194 FDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253
+ PW + +LL W++ TGYP++DA M QL GWMH+ AR V FL
Sbjct: 289 TPEEPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSFL 348
Query: 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDP 312
+ D+ + W+ G F L+D+D A N W W++ S + Y RI++P++ G+K+DP
Sbjct: 349 VK-DLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDP 407
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
G+Y+R ++P + ++P ++I++PW APL + +A +G+ YP P+V+HD A
Sbjct: 408 EGSYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEA 459
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 180/366 (49%), Gaps = 19/366 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSP 56
K+K+ + V + TL++ D+ + G P Y F K +P+ ++
Sbjct: 121 KLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST-- 178
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISD 114
P + S PP G E +PT + LG + S F RGGE+EAL +L+ D
Sbjct: 179 -PEQVKS-PPSG----LEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWD 232
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
VA +++ + +T SP+L GC+S RY Y+ + Y+ + +
Sbjct: 233 TNAVATYKETRNGMIGV--DFSTKFSPWLALGCISPRYIYEQIKK-YEVERTANQSTYWV 289
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +LLWRD+F VA N K +PW D ++ AW+E RTG P++DA M +
Sbjct: 290 IFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWKTDMKMFDAWKEGRTGVPFVDANMRE 349
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L G+M + R VA FLT+ D+ + W G + F+ LL+D D N GNWL+ +
Sbjct: 350 LALTGFMSNRGRQNVASFLTK-DLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGND 408
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+ NR ++ + G YD NG+Y+R ++P L+ + ++ PWT + + A+ + + Y
Sbjct: 409 PRENRKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468
Query: 355 PAPVVS 360
P P+++
Sbjct: 469 PCPIIT 474
>gi|422699183|ref|ZP_16757056.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346]
gi|315172271|gb|EFU16288.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346]
Length = 477
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LKHYSVGEKTARRCLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 10/233 (4%)
Query: 136 TTVLSPYLKFGCLSSRYFYQC---LTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP 192
++LSP+L G +S + L+D Y + + +L+WRDF Y + F P
Sbjct: 252 VSMLSPHLALGEISPASVWHATRGLSDSYSSEDY-----IHFRKELVWRDFSYHLLFHFP 306
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ N PW + +LL WR+ +TGYP IDA M QL + G+MH+ R VA F
Sbjct: 307 DLATKNWNTKFDAFPWRHAPDLLEKWRKGQTGYPIIDAGMRQLWQTGFMHNRVRMIVASF 366
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYD 311
L + D+ + W +G F L+D+D A N +W W++ S + + RI++P+S G+K+D
Sbjct: 367 LIK-DLLIDWREGERWFRDTLVDADPASNAASWQWVAGSGADAAPFFRIFNPISQGEKFD 425
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
P G Y+R F+P LK MP ++I++P+ AP + A +G+ YP P+V H A
Sbjct: 426 PEGAYVRRFVPELKAMPDKFIHKPFDAPFAVLKEAGVSLGKTYPQPIVDHGKA 478
>gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
gi|397699913|ref|YP_006537701.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis D32]
gi|422704508|ref|ZP_16762318.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
gi|422708504|ref|ZP_16766032.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
gi|422869328|ref|ZP_16915848.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TX1467]
gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TX1467]
gi|397336552|gb|AFO44224.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis D32]
Length = 477
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEKTARRCLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|386824611|ref|ZP_10111744.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
gi|386378568|gb|EIJ19372.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
Length = 476
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 168/361 (46%), Gaps = 22/361 (6%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
+G + +L P +Q GG+ Y F K Q L S V P +
Sbjct: 122 SGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRL---SEFDVRSLPAPKPRE 178
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
G +S P + G G + F GE AL++LR + +E V ++ + + P+
Sbjct: 179 GGALPVSAAPAAFDYPSAGVGAD----FPAGEEAALQRLR--VFCREQVQDYLQQRDFPA 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVA 188
T+ LSPYL G LS R F + + Q ++ S + +L+WR+F+ +
Sbjct: 233 I---AGTSSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHLM 289
Query: 189 FGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARH 247
P R + ++ W ++D LL AW++ TGYP +DA M QL K GWMH+ R
Sbjct: 290 VAYPALCRHRPFIEWTDKVRWRDNDALLLAWQQGATGYPIVDAAMRQLNKTGWMHNRLRM 349
Query: 248 CVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSF 306
A FL + D+ + W G F L+D D A NNG W W S + Y RI++P +
Sbjct: 350 ISASFLVK-DLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
G+++DP G +IR +LP L D+P +++P+ Q DYP P+V H A
Sbjct: 409 GERFDPQGTFIRKWLPELADVPDNDLHQPYRWAEKQQRTL------DYPLPIVDHKQARL 462
Query: 367 E 367
E
Sbjct: 463 E 463
>gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|422598313|ref|ZP_16672576.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 482
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 182/380 (47%), Gaps = 26/380 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG++V S + LF P I+ K G + + F K+ + + P PV
Sbjct: 113 VQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYNRMHQAMPQPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + +P VE +L P GE+EA +++ + +D + ++ +
Sbjct: 171 --PKAQQSLSIKSDSIPDQVEGFATPSKALRDLWP--AGEAEARRRM-ATFADAQ-ISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P+S +++DP G +I+ +LP L D+ K+ I++P + DYP P+
Sbjct: 401 RIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASIGGLFGAADYPKPI 453
Query: 359 VSHDSASKECKRKLGEAYAL 378
V SK R L AL
Sbjct: 454 V---DLSKSRARALTAFKAL 470
>gi|218245570|ref|YP_002370941.1| DASH family cryptochrome [Cyanothece sp. PCC 8801]
gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
Length = 488
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 170/342 (49%), Gaps = 13/342 (3%)
Query: 21 TLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-PLPVSLSSLPPVGDVGYFEISEVP 79
TL++P D+ P L ++ + L S+ P P L SLP + ++ +P
Sbjct: 139 TLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFPTPKKLPSLPNL------DLGNIP 192
Query: 80 TVEELGYKG--YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
T+ ELG + + + F GGESE +K+L + K + ++++ + + ++
Sbjct: 193 TLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETRNEMLG--SDYSS 250
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
SP+L GCLS RY Y+ +T Y+ + L+ +LLWRD+F + N
Sbjct: 251 KFSPWLALGCLSPRYIYEEVTK-YELERVKNDSTYWLIFELLWRDYFRFICAKHGNKVFY 309
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+PW D + W+ TGYP +DA M +L G+M + R VA FLT+ +
Sbjct: 310 SSGLQGLNLPWKEDWQRFQLWQTGNTGYPLVDANMRELAATGFMSNRGRQNVASFLTK-N 368
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
+ ++W G + F+ +LID D N GNW + + + R ++ K YDP GNY+
Sbjct: 369 LGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGNYL 428
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
RH+LP LK +P + I+EPW Q + + +G DYP P+V
Sbjct: 429 RHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPIV 470
>gi|422604194|ref|ZP_16676211.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
str. 301020]
gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
str. 301020]
Length = 482
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 182/380 (47%), Gaps = 26/380 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG++V S + LF P I+ K G + + F K+ + + P PV
Sbjct: 113 VQKALEKAGVQVTSYLDQLLFKPGSILTKAGNYFQV-FTQFKKVCYNRMHQAMPQPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + +P VE +L P GE+EA +++ + +D + ++ +
Sbjct: 171 --PKAQQSLSIKSDSIPDQVEGFATPSKALRDLWP--AGEAEARRRM-ATFADAQ-ISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P+S +++DP G +I+ +LP L D+ K+ I++P + DYP P+
Sbjct: 401 RIFNPLSQSERFDPEGLFIKRWLPELADLNKKQIHDP-------ASIGGLFGAADYPKPI 453
Query: 359 VSHDSASKECKRKLGEAYAL 378
V SK R L AL
Sbjct: 454 V---DLSKSRARALAAFKAL 470
>gi|384518625|ref|YP_005705930.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
Length = 477
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/367 (29%), Positives = 176/367 (47%), Gaps = 36/367 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V++
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVNY 450
Query: 362 DSASKEC 368
S+ K+
Sbjct: 451 ASSKKQT 457
>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
Length = 495
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 174/375 (46%), Gaps = 38/375 (10%)
Query: 8 STAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF-----------LKLAGQPLWASSP 56
+T G ++ + H +F +++ ++G KP + + L A P +
Sbjct: 120 ATDGRKLQTYKDHVIFEKDEVLSQSG-KPFSVFTPYKNAWLKKLHTELAPADMPAYEIDT 178
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEEL---SPFRGGESEALKKLRESIS 113
L + LP +S +P + ELG++ EL + +GG++ + +
Sbjct: 179 LRAHFAPLPA-------NLSGIPALSELGFEKTNLTELNIPTGMQGGQA-LFDDFIDRMP 230
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
D + +F KG + LS +L+FG +S R + D + T V
Sbjct: 231 DYDSTRDFPAVKG---------PSYLSVHLRFGTVSIRALVRRALDAMRIGAGGTGAAVW 281
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND---DELLAAWREARTGYPWIDA 230
L +L+WRDF++ + + P+ I W N +EL AW + RTGYP +DA
Sbjct: 282 L-SELVWRDFYFMILYQHPHVRERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDA 340
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
M QL + G+MH+ R A FL + D+ + W G F L D D A NNG W W S
Sbjct: 341 AMAQLNQTGYMHNRLRMVTASFLIK-DLGIDWRWGERYFAEKLNDFDLAANNGGWQWASS 399
Query: 291 SSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
S Q Y RI++P++ +K+DP+G +IR +LP L + + I+ PW P A
Sbjct: 400 SGCDAQPYFRIFNPLTQSEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGIT 459
Query: 350 IGRDYPAPVVSHDSA 364
+GRDYP P++ HD A
Sbjct: 460 LGRDYPHPLLQHDEA 474
>gi|389848325|ref|YP_006350564.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|448618531|ref|ZP_21666768.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|388245631|gb|AFK20577.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|445746902|gb|ELZ98360.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
Length = 482
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 169/363 (46%), Gaps = 32/363 (8%)
Query: 15 FSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL-------------AGQPLWASSPLPVSL 61
+ V +F+P I N G P Y F K L ++ L +
Sbjct: 118 YESVHDAIFHPPGSITTNAGDPYSVYTYFWKKWRDRDKPDPYPEPDADSLVDAAVLEAAS 177
Query: 62 SSLPPVG-DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+L DV + ++PT+ +LG+ + +S G A K+L + D +
Sbjct: 178 ETLSDADFDVA---VGDLPTISDLGFDEPSADIVS---AGTDAARKRLADFCEDA--IYR 229
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQLL 179
+ + P+ + AT+ LS LKFG + R Y + + V V + QL
Sbjct: 230 YADDRDYPA---RNATSRLSTDLKFGTIGIREVYAATAEAREGVGGEQDESVETFQSQLA 286
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+F+ V PN I W +D + LAAW+E RTGYP +DA M QL+K
Sbjct: 287 WREFYAHVLRYNPNVVTENYKEYEHDIQWRDDSDELAAWKEGRTGYPIVDAGMRQLKKEA 346
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YN 298
+MH+ R VA FLT+ D+ +W G D F L D D A +NG W W + + Q Y
Sbjct: 347 YMHNRVRMIVASFLTK-DLLCNWRHGYDHFREYLSDHDTANDNGGWQWAASTGTDAQPYF 405
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P++ G++YDP+G YI+ ++P L+ + I+E W I + + +YPAP+
Sbjct: 406 RIFNPMTQGERYDPDGEYIKKYVPELEGVAASTIHE-WH---EISETERDRVAPNYPAPI 461
Query: 359 VSH 361
V H
Sbjct: 462 VDH 464
>gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
Length = 477
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSTC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LKHYSVGEKTARRCLNTFIDQK--LRSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L + ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASMPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRGGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|441504075|ref|ZP_20986072.1| Deoxyribodipyrimidine photolyase [Photobacterium sp. AK15]
gi|441428248|gb|ELR65713.1| Deoxyribodipyrimidine photolyase [Photobacterium sp. AK15]
Length = 485
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 178/360 (49%), Gaps = 18/360 (5%)
Query: 8 STAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPV 67
S GI+ + + P + KNG P + F K + + P S+ +
Sbjct: 124 SEQGIKFSAFDDACIIEPGKVQTKNGD-PYKVFTPFRKEWLRLFRLAMPKVQSVPQVKKE 182
Query: 68 GDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
+ +SE V + Y +++ + E ++LR S+K + + + +
Sbjct: 183 SETSVSSLSEALFVHDKIELTYPKKDSLQWPVDEDAIRQRLRTFCSEKAQI--YHEQRDI 240
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV-KKHTSPPVSLVGQLLWRDFFYT 186
P+ T+ LSPYL G LS R L +V+ + + S S + +++WR+F+
Sbjct: 241 PAI---DGTSCLSPYLTHGALSPRQCVSALLEVFPHCFDEPESGAFSWLNEIIWREFYRH 297
Query: 187 VAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ P R + + I W + LAAW++ RTG+P +DA M QL++ GWMH+
Sbjct: 298 LMVAFPRLSRDQPFQSWTRNISWRQSESDLAAWQQGRTGFPIVDAAMRQLKETGWMHNRL 357
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPV 304
R A FLT+ D+ ++W +G F L+D D A NNG W W + + Q Y R+++P
Sbjct: 358 RMITASFLTK-DLLINWREGERWFMSQLVDGDLAANNGGWQWAASTGTDAQPYFRVFNPT 416
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+ G+++DP+G +IR ++ LKD+P ++I++P + P +Q +YPAP+V H SA
Sbjct: 417 TQGERFDPDGKFIRTWVHELKDVPDKFIHQPHSWPGAVQI--------NYPAPIVDHKSA 468
>gi|257058615|ref|YP_003136503.1| DASH family cryptochrome [Cyanothece sp. PCC 8802]
gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
Length = 488
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 169/342 (49%), Gaps = 13/342 (3%)
Query: 21 TLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-PLPVSLSSLPPVGDVGYFEISEVP 79
TL++P D+ P L ++ + L S+ P P L SLP + ++ +P
Sbjct: 139 TLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFPTPKKLPSLPNL------DLGNIP 192
Query: 80 TVEELGYKG--YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
T+ ELG + + + F GGESE +K+L + K + ++++ + ++
Sbjct: 193 TLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETRNGMLG--SDYSS 250
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
SP+L GCLS RY Y+ +T Y+ + L+ +LLWRD+F + N
Sbjct: 251 KFSPWLALGCLSPRYIYEEVTK-YELERVKNDSTYWLIFELLWRDYFRFICAKHGNKVFY 309
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+PW D + W+ TGYP +DA M +L G+M + R VA FLT+ +
Sbjct: 310 SSGLQGFNLPWKEDWQRFQLWQTGNTGYPLVDANMTELAATGFMSNRGRQNVASFLTK-N 368
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
+ ++W G + F+ +LID D N GNW + + + R ++ K YDP GNY+
Sbjct: 369 LGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGNYL 428
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
RH+LP LK +P + I+EPW Q + + +G DYP P+V
Sbjct: 429 RHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPIV 470
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 180/378 (47%), Gaps = 27/378 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTY----QSFLKLAGQPLWASSPL 57
+VK+ I+ + L P +I+ K+ P Y +S++K + S
Sbjct: 112 QVKEALEEKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEK 171
Query: 58 PVSLSS--LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
SLS + V D+G ++ PT ++LGY L P GE+ A ++L SD
Sbjct: 172 LESLSDEEINTVKDLGLIDL---PTAKDLGYSWDAPLLLEP---GETAAKEQLN-YFSDN 224
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+ ++++ + P+ AT+ LSP KFG + R +Q + Y+N + +
Sbjct: 225 A-IYSYQEQRNLPAI---DATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARENIQT 280
Query: 176 GQ--LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
Q + WR+F+ + P K+ PW N+++ AW E +TGYP +DA M
Sbjct: 281 WQQEIAWREFYQHCLYFFPELAEGPYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAMR 340
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QL + GWMH+ R VA FLT+ D+ ++W+ G F + LID D + NNG W W + S
Sbjct: 341 QLNETGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGM 399
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
+ RI++P S +KYDP+G YIR ++P + + E + PL +
Sbjct: 400 DPKPLRIFNPASQAQKYDPDGEYIRLWVPEISSLDTECLVTGKIPPLEAHSCG------- 452
Query: 354 YPAPVVSHDSASKECKRK 371
YP P+V H +E K +
Sbjct: 453 YPQPIVDHKQQQREFKER 470
>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
Length = 478
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 174/362 (48%), Gaps = 18/362 (4%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-PLWASSPLPVSLSSLPPVGD 69
G EV S + L+ P +I ++GG P Y F K A Q + + P P L + D
Sbjct: 116 GYEVKSFKASLLYEPWEIETQSGG-PYKVYSPFWKAARQIEIDDALPAPEKLD----IAD 170
Query: 70 V-GYFEISEVPTVEELGYKGYGQEEL-SPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
G E+ + + G E+L +P G SE L E E + + K +
Sbjct: 171 YDGGEELESFDLLPKKPNWAKGWEDLWTPGEAGASERLGSFLE-----EGLKGYGKLRNR 225
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV 187
P P + LSP+L FG +S R + DV + + ++ WR+F + +
Sbjct: 226 PDL---PNVSRLSPHLHFGEISPRQIWHATQDVMDRRSSLGDDGMKFLSEIAWREFSHNL 282
Query: 188 AFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARH 247
+ P + PW D L W++ +TGYP +DA M +L + G+MH+ R
Sbjct: 283 LYHFPKLPSENWRSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRM 342
Query: 248 CVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSF 306
A FL + + +HW G F L+D+D A N+ W W++ S + Y R+++P++
Sbjct: 343 IAASFLIK-HLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQ 401
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
G+K+DP+GNYIR ++P L+++ Y++ P+ AP +A+ +G YP P+V H SA +
Sbjct: 402 GEKFDPDGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASARE 461
Query: 367 EC 368
Sbjct: 462 AA 463
>gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 482
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 182/380 (47%), Gaps = 26/380 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG++V S + LF P I+ K G + + F K+ + + P PV
Sbjct: 113 VQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYNRMHQAMPQPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + +P VE +L P GE+EA +++ + +D + ++ +
Sbjct: 171 --PKAQQSLSIKSDSIPDQVEGFATPSKALRDLWP--AGEAEARRRV-ATFADAQ-ISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P+S +++DP G +I+ +LP L D+ ++ I++P + DYP P+
Sbjct: 401 RIFNPLSQSERFDPEGLFIKRWLPELADLNRKQIHDP-------ASIGGLFDAADYPKPI 453
Query: 359 VSHDSASKECKRKLGEAYAL 378
V SK R L AL
Sbjct: 454 V---DLSKSRARALAAFKAL 470
>gi|399020171|ref|ZP_10722310.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. CF444]
gi|398095823|gb|EJL86155.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. CF444]
Length = 498
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 149/310 (48%), Gaps = 24/310 (7%)
Query: 78 VPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
+PT+++LG+ ++L G G ++ L+ + +F KG
Sbjct: 198 LPTLDDLGFLPTNLKDLRIPTGMSGAAQLLEDFLPRLGKYGDTRDFPAVKG--------- 248
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
+ LS +L+FG ++ R + D + PV L +L+WRDF++ + F P
Sbjct: 249 PSYLSVHLRFGTIAIRTLVRAAVDAMRIGAGRRGAPVWL-SELVWRDFYFMILFHHPRVV 307
Query: 196 RMKGNRICKQIPWSNDD---ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
I W E AAW E RTGYP +DA M+QL + G+MH+ R A F
Sbjct: 308 ERSFKSDYDAIQWEGGKRARESFAAWCEGRTGYPLVDAAMLQLNQTGYMHNRLRMVTASF 367
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
LT+ D+ + W G F L D D + NNG W W S S Q Y RI++P++ +++D
Sbjct: 368 LTK-DLGIDWRWGEKYFADQLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSERFD 426
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE---- 367
G +IR +LP L +P +YI+ PW P + A +G+DYP P+V H A K
Sbjct: 427 AEGKFIRRYLPQLAGLPDKYIHAPWLCPADLLKAAGVTLGKDYPLPLVDHAEARKRTLLR 486
Query: 368 ---CKRKLGE 374
K+ LGE
Sbjct: 487 YAVVKKDLGE 496
>gi|392382530|ref|YP_005031727.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
gi|356877495|emb|CCC98335.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
Length = 485
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 2/230 (0%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T+ +SP+L FG + R + + + + + +L WR+F + + P
Sbjct: 241 TSAMSPHLAFGEIGPRQIWHAARHAADQRHELAAGAEAFLRELGWREFNHHLLREEPGIP 300
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
+ + PW D L AW+ RTGYP +DA M QL + GWMH+ R V FL +
Sbjct: 301 DTPLDTRFARFPWRTDKAGLRAWQSGRTGYPIVDAGMRQLWQTGWMHNRVRMIVGSFLIK 360
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNG 314
D+ + W++G F L+D+D A N GNW W++ C + + R+++P+ G+K+DP G
Sbjct: 361 -DLLIPWQEGESWFWDTLVDADIANNAGNWQWVAGCGADAAPFFRVFNPILQGEKFDPEG 419
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
Y+R ++P L+ +P +I++PW AP +A +G+DYP PV+ H +A
Sbjct: 420 AYVRRYVPELEALPNRWIHKPWEAPDEALRQAGVKLGKDYPRPVIDHGTA 469
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 174/377 (46%), Gaps = 35/377 (9%)
Query: 11 GIEVFSPV-SHTLFNPADIIQKNGGKPPLTYQSFLK----LAGQPLWASSPLPVSLSSLP 65
GIE+ + L P D++ GKP Y F + L P A+ V LS
Sbjct: 121 GIEMRTKTWDQLLHAPGDVL-TGAGKPYTVYGPFWRNWQNLVKLPPAATLQGAVGLSD-- 177
Query: 66 PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPK 125
+ G + +P+ + LG+ L P GE A +L E K + +++ +
Sbjct: 178 --AERGLVDEIALPSAKALGFTWAAPLPLEP---GERAARAQL-EFFGHKA-IEAYDEQR 230
Query: 126 GDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ--NVKKHTSPPVSLVGQLLWRDF 183
P+ T++LS LKFG + R +Q Y N + + + + +L WR+F
Sbjct: 231 NFPAV---TGTSLLSAALKFGAVGMREVWQTAMTAYDACNSDEGRTNVQTWMKELAWREF 287
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+ V F P K PW ND+E AAW E RTGYP +DA M QL + GWMH+
Sbjct: 288 YQHVMFFFPELAHGPYRDAWKDFPWDNDEEKFAAWCEGRTGYPIVDAAMRQLNETGWMHN 347
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSP 303
R VA FLT+ D+ + W G F + L+D D + NNG W W + S + RI++P
Sbjct: 348 RCRMIVASFLTK-DLIIDWRWGEKYFMQKLVDGDLSANNGGWQWSASSGMDPKPLRIFNP 406
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
S KK+D + +YIR +LP ++ + + +PL ++ G DY AP+V H
Sbjct: 407 ASQAKKFDADADYIRQWLPEIRHVDTGALVSGKLSPLDLE-------GTDYAAPIVDHKK 459
Query: 364 AS-------KECKRKLG 373
KE K KLG
Sbjct: 460 QQAVFKERYKEQKAKLG 476
>gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
Length = 497
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 143/292 (48%), Gaps = 16/292 (5%)
Query: 80 TVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
T+ ELG+ L G G S + I D + ++ KG +
Sbjct: 209 TLSELGFAPSNLHALKLPLGASGASALVDDFSRRIDDYDQARDYPARKG---------PS 259
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
LS +L+FG +S R + + + + + + +L+WRDF++ + F P+
Sbjct: 260 YLSVHLRFGTVSVR---ELVAMAWARQQAGSEGARVWLSELVWRDFYFQILFHHPHVVNA 316
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+ +I W ND AAW E RTGYP +DA M Q+ + G+MH+ R VA FLT+ D
Sbjct: 317 AFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVVASFLTK-D 375
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNY 316
+ + W G F L D D A NNG W W + S Q Y RI++PV+ +K+D G++
Sbjct: 376 LGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSEKFDAGGDF 435
Query: 317 IRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
IR ++P L + + I+ PW AP + A +G YPAP+V HD A E
Sbjct: 436 IRRYVPELAQLASKDIHAPWKAPAALLQAAGVRLGSTYPAPIVRHDLARAET 487
>gi|127512408|ref|YP_001093605.1| deoxyribodipyrimidine photo-lyase [Shewanella loihica PV-4]
gi|126637703|gb|ABO23346.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella loihica PV-4]
Length = 478
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 133/239 (55%), Gaps = 14/239 (5%)
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP-PVSLVGQLLWRDFFYTVAFGTPN 193
T+ LSPYL G +SSR+ L + V T + + +L+WRDF+ + F P
Sbjct: 242 GTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLFHYPE 301
Query: 194 FDRMKGNRI---CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
+KG + +PW N++ AW E RTGYP +DA M QLR+ GWMH+ R VA
Sbjct: 302 L--IKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMIVA 359
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKK 309
FLT+ + V W KG F + LID D++ NNG W W + + Q Y RI++P++ +K
Sbjct: 360 SFLTK-HLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQK 418
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+DP G +IR +LP L+++P + I+ P L Q +A+ YPAP+V H +A +
Sbjct: 419 FDPRGEFIRKYLPELREVPDKQIHFPHDY-LASQGKAEI-----YPAPIVDHKAARQRA 471
>gi|421782185|ref|ZP_16218644.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
gi|407755741|gb|EKF65865.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
Length = 476
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 171/362 (47%), Gaps = 24/362 (6%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
+G + +L P +Q GG+ Y F K Q L S V P +
Sbjct: 122 SGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESD---VRSLPAPKRRE 178
Query: 70 VGYFEISEVPTVEELGYKGYGQEEL-SPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
G +S P + Y Q E + F GE AL++LR +E V ++ + + P
Sbjct: 179 GGALPVSVAPAAFD-----YPQVEAGADFPAGEDAALQRLRAFC--REQVQDYLQQRDFP 231
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCL-TDVYQNVKKHTSPPVSLVGQLLWRDFFYTV 187
+ T+ LSPYL G LS R + L + Q ++ S + +L+WR+F+ +
Sbjct: 232 AI---AGTSSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHL 288
Query: 188 AFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
P R + ++ W NDD LL AW++ TGYP +DA M QL K GWMH+ R
Sbjct: 289 MVAYPALCRHRPFIEWTDRVRWRNDDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLR 348
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVS 305
A FL + D+ + W G F L+D D A NNG W W S + Y RI++P +
Sbjct: 349 MISASFLVK-DLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 407
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSAS 365
G+++DP G +IR +LP L D+P +++P L + + + + DYP P+V H A
Sbjct: 408 QGERFDPQGTFIRKWLPELADVPDNALHQP---HLWAEKQQRTL---DYPVPIVDHKQAR 461
Query: 366 KE 367
E
Sbjct: 462 LE 463
>gi|440744576|ref|ZP_20923879.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP39023]
gi|440373994|gb|ELQ10737.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP39023]
Length = 482
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 183/385 (47%), Gaps = 36/385 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG+ S + LF P I+ K G + + F K+ L + P PV
Sbjct: 113 VQKAMEKAGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + +P V+ +L P GE+EA +++ ++ +D E ++ +
Sbjct: 171 --PKAQSAQSIKSDPIPDQVKGFATPAKALRDLWP--AGEAEARRRM-DAFAD-EQISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KDERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGNVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RD 353
RI++P+S +++DP G +I+ +LP L D+ K+ I++P +IG D
Sbjct: 401 RIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP------------SLIGDLFGAAD 448
Query: 354 YPAPVVSHDSASKECKRKLGEAYAL 378
YP P+V SK R L AL
Sbjct: 449 YPKPIV---DLSKSRARALAAFKAL 470
>gi|66044214|ref|YP_234055.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
B728a]
gi|63254921|gb|AAY36017.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas syringae pv.
syringae B728a]
Length = 482
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 181/385 (47%), Gaps = 36/385 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG+ S + LF P I+ K G + + F K+ L + P PV
Sbjct: 113 VQKAMGKAGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + VP V+ +L P GE+EA +++ +++ ++ +
Sbjct: 171 --PQAQAAQSIKSDAVPKQVKGFATPSKALRDLWP--AGEAEARRRMDAFAAEQ--ISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RD 353
RI++P+S +++DP G +I+ +LP L DM K+ I++P +IG D
Sbjct: 401 RIFNPLSQSERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAAD 448
Query: 354 YPAPVVSHDSASKECKRKLGEAYAL 378
YP P+V SK R L AL
Sbjct: 449 YPKPIV---DLSKSRARALAAFKAL 470
>gi|410694724|ref|YP_003625346.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
Length = 497
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 16/294 (5%)
Query: 78 VPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
+PT+ ELG+ L G G + + I D + ++ KG
Sbjct: 207 LPTLSELGFAPSNLHALKLPLGASGAAALVDDFSRRIDDYDQARDYPARKG--------- 257
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
+ LS +L+FG +S R + + + + + + +L+WRDF++ + F P+
Sbjct: 258 PSYLSVHLRFGTVSVR---ELVAMAWARQQAGSEGARVWLSELVWRDFYFQILFHHPHVV 314
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
+ +I W ND AAW E RTGYP +DA M Q+ + G+MH+ R VA FLT+
Sbjct: 315 NAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVVASFLTK 374
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNG 314
D+ + W G F L D D A NNG W W + S Q Y RI++PV+ +K+D G
Sbjct: 375 -DLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSEKFDAGG 433
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
++IR ++P L + I+ PW AP + A +G YP P+V HD A E
Sbjct: 434 DFIRRYVPELAQFASKDIHAPWKAPAALLQAAGVRLGSTYPVPIVRHDLARAET 487
>gi|449145685|ref|ZP_21776486.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
gi|449078633|gb|EMB49566.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
Length = 469
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 142/260 (54%), Gaps = 21/260 (8%)
Query: 108 LRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK 165
+R + D +E V ++ + + P+ + T+VLSPYL G LS+R QC+ +Y+
Sbjct: 209 IRTQLRDFCRERVQDYHQWRDFPA---REGTSVLSPYLAIGALSAR---QCVARLYRESA 262
Query: 166 KHTSPPVSLV--GQLLWRDFFYTVAFGTPNFDRMKGN-RICKQIPWSNDDELLAAWREAR 222
+ V +L+WR+F+ + PN + + ++ W ND E W E +
Sbjct: 263 MSALSEGAQVWLSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEKFQRWCEGQ 322
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A NN
Sbjct: 323 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANN 381
Query: 283 GNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT P
Sbjct: 382 GGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-- 439
Query: 342 IQTRAKCIIGRDYPAPVVSH 361
+ YPAP+V H
Sbjct: 440 ------AVNSVLYPAPLVDH 453
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 21/366 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK--LAGQPLWASSPLPV 59
++K G+ V S LF P + K G +P + F + LA + A P P
Sbjct: 112 EIKSQLRARGVMVESFNGSLLFEPGGLRNKQG-EPFRVFTPFWRACLAAEAPDAPLPAPK 170
Query: 60 SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
L++ PP + +PT + + G +E +R GE AL++L E + V
Sbjct: 171 KLTAAPPPASDALADWRLLPTKPD--WAGGLRET---WRAGEHAALERLAEFAKKR--VR 223
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
++ K D + + +SP+L FG +S R + +T+ + + + ++
Sbjct: 224 DY---KIDRDFMAREGVSRMSPHLHFGEVSPRRIWAEITEAAGDAG------AAYLREIG 274
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+F + + P + + PW D L AWR +TGYP +DA M +L G
Sbjct: 275 WREFCHHLLVANPQMPERALDERFRDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITG 334
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYN 298
MH+ AR A FL + + + W++G F L+D+D A N+G W W++ C + Y
Sbjct: 335 NMHNRARMVAASFLVK-HLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYF 393
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
R+++PV G+K+DP G+Y+R ++P L + +I+ PW AP + A +G YP P+
Sbjct: 394 RVFNPVLQGEKFDPEGDYLRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPI 453
Query: 359 VSHDSA 364
V H A
Sbjct: 454 VDHAKA 459
>gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
AAC00-1]
gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
AAC00-1]
Length = 493
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 180/384 (46%), Gaps = 40/384 (10%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V+ T G+++ + H +F A+++ + GG P + + + W L
Sbjct: 119 RVRRRLGTGGVQMLTYKDHAIFERAEVLTQ-GGTPYTVFTPY-----KNAWLRKVDAFYL 172
Query: 62 SSLPPVGDVGYF------EISEVPTVEELGYKGYGQEELS--PFRGGESEALKKLRESIS 113
S+ P G E VP + ++G++ G + L P G L + I
Sbjct: 173 SAYPVERHAGRLAPRPEGERGGVPALADIGFEPAGLDRLPLPPGMDGARALLDDFLQRID 232
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
+F KG + LS +L+FG LS + ++ +++ ++ +
Sbjct: 233 QYGEARDFPAVKG---------PSYLSVHLRFGTLSP---RRAARAAHERMRQGSTGAAT 280
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND---DELLAAWREARTGYP 226
+ +L+WRDF++ V P ++ G K I W + E AAW E RTGYP
Sbjct: 281 WLNELIWRDFYFQVLAHHP---QVAGGASFKPAYDAIAWEDGPQARERFAAWCEGRTGYP 337
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+DA M Q+ + G+MH+ R VA FL + D+ V W G F L D D + NNG W
Sbjct: 338 LVDAAMAQINRTGYMHNRLRMVVASFLVK-DLGVDWRWGERYFAEKLNDFDLSANNGGWQ 396
Query: 287 WLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA-PLTIQT 344
W S S Q Y RI++PVS +K+DP G +IR +LP L +P +++ PW A PL ++
Sbjct: 397 WASSSGCDAQPYFRIFNPVSQSRKFDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEA 456
Query: 345 RAKCIIGRDYPAPVVSHDSASKEC 368
A +G +YP PVV HD A +
Sbjct: 457 -AGVRLGDNYPHPVVDHDEARQRT 479
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 161/327 (49%), Gaps = 26/327 (7%)
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKG--YGQEELSPFRGGESEALKKLRESISDK 115
P L SLP + E+ VP++EEL + Y + F+GGE+E +++L ++
Sbjct: 175 PRKLRSLPDI------EVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQRLNNYFWER 228
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
+ +++ + ++ SP+L GCLS RY Y+ + Y+ + + L+
Sbjct: 229 NCLKEYKETRNGMLG--ADYSSKFSPWLANGCLSPRYIYEEVQK-YEEKRIKNNSTYWLI 285
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRICKQ-------IPWSNDDELLAAWREARTGYPWI 228
+LLWRD+F ++ GN+I Q IPW D E W+E TGYP +
Sbjct: 286 FELLWRDYFRFIS-------AKHGNKIFYQSGLQGVDIPWKEDQERFKLWQEGNTGYPLV 338
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
D M +L G+M + R VA FLT+ ++ ++W G + F+ LLID D N GNW +
Sbjct: 339 DGNMRELAATGFMSNRGRQNVASFLTK-NLGINWIMGAEWFESLLIDYDVCSNYGNWNYT 397
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
+ + R ++ K YDP G YI+H+LP LK +P + I+EPW Q R
Sbjct: 398 AGVGNDARGFRYFNIPKQSKDYDPKGEYIKHWLPELKMIPGQKIHEPWKLSQEEQKRYNV 457
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEA 375
IG +YP PVV + K ++ A
Sbjct: 458 RIGVNYPRPVVDFFKSVKANEKMYNAA 484
>gi|422679531|ref|ZP_16737804.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 482
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 181/380 (47%), Gaps = 26/380 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+ AG++V S + LF P I+ K G + + F K+ + + P PV
Sbjct: 113 VQKALEKAGVQVTSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYNRMHQAMPQPVRT- 170
Query: 63 SLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P + +P VE +L P GE+EA +++ + +D + ++ +
Sbjct: 171 --PKAQQSLSIKSDSIPDQVEGFATPSKALRDLWP--AGEAEARRRM-ATFADAQ-ISYY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+ + P+ KP T+ LS YL G +S R + L + V+ + +LLW
Sbjct: 225 KTERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLW 281
Query: 181 RDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F+ G P R + R + + W + E L AW+EARTG P IDA M QL + G
Sbjct: 282 REFYKHTLVGYPRVSRHRAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETG 341
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY-QYN 298
WMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + Y
Sbjct: 342 WMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSPPYF 400
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P+S +++DP G +I+ +LP L D+ K+ I++P + DYP P+
Sbjct: 401 RIFNPLSQSERFDPEGVFIKRWLPELADLNKKQIHDP-------ASIGGLFGAADYPKPI 453
Query: 359 VSHDSASKECKRKLGEAYAL 378
V SK R L AL
Sbjct: 454 V---DLSKSRARALTAFKAL 470
>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
Length = 462
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 163/350 (46%), Gaps = 38/350 (10%)
Query: 22 LFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTV 81
L P +++ K+ G P + + FLK S + V P + E+ +
Sbjct: 146 LHEPTEVL-KDNGMPYIKFTDFLK-------KSKKIDVRE---PQKNKFKNYFTEEISSS 194
Query: 82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSP 141
L + Q E +GG E L + + + N+ + + PS TT LSP
Sbjct: 195 IALQVDKFPQNENLILKGGRKEGLSYIERIVK----LKNYSETRNTPSI---DGTTKLSP 247
Query: 142 YLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNR 201
+LKFG +S R +VY V ++ ++ QL WRDFF + + P+
Sbjct: 248 HLKFGTVSVR-------EVYGKVNENFGNEHEIITQLHWRDFFTHILYHFPHVLGNSFKE 300
Query: 202 ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVH 261
QI W ND + AW RTGYP +DA M QL GWMH+ R FL + D+ +
Sbjct: 301 KYNQIQWENDVDKFKAWCTGRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVK-DLHID 359
Query: 262 WEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHF 320
W G F + L+D D AINNGNW W++ + Q + RI++P+ +K+DP NYI+ +
Sbjct: 360 WRWGEKYFAQRLVDYDPAINNGNWQWVASTGCDAQPFFRIFNPILQQQKFDPECNYIKTW 419
Query: 321 LPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKR 370
LP L ++ E I+ P I DYP P+V H AS++ K+
Sbjct: 420 LPELTNLNLEQIH-TLNIPKDI----------DYPTPIVDHKVASEKAKK 458
>gi|422648203|ref|ZP_16711327.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330961741|gb|EGH62001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 481
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 195/394 (49%), Gaps = 27/394 (6%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+ V+ AG++V S + LF P I+ K G + + F K+ L ++ PV
Sbjct: 111 LAVQKMLEEAGVQVNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEATH-PVR 168
Query: 61 LSSLPPVGDVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
+ + I+ P +++ G+ Q + + GE EA +++ ++ +D++ ++
Sbjct: 169 MPAAQQA-----LSITSDPVPDQVKGFATPSQTLRALWPAGEGEAKRRM-DAFADEQ-IS 221
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQL 178
++ + P+ KP T+ LS YL G +S R + L+ + + V+ + +L
Sbjct: 222 YYKDERDFPA---KPGTSQLSAYLAAGVISPRQCLHAALSSNHGEFETGDVGTVTWINEL 278
Query: 179 LWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LWR+F+ G P R + R + + W + + L AW+EARTG P IDA M QL +
Sbjct: 279 LWREFYKHTLVGYPRVSRHRAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLE 338
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQ 296
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 339 TGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAP 397
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y RI++P+S +++DP G +I+ +LP L ++ K+ I++P + DYP
Sbjct: 398 YFRIFNPLSQSERFDPEGVFIKRWLPELANLNKKQIHDP-------SSMGGLFGVADYPK 450
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNGQVSEDG 390
P+V SK R L AL ++ E+G
Sbjct: 451 PIV---DLSKSRARALAAFKALPTRVPAAGVENG 481
>gi|398882406|ref|ZP_10637374.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM60]
gi|398198948|gb|EJM85898.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM60]
Length = 481
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 175/339 (51%), Gaps = 20/339 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + T G++ +S + LF+P ++ K G + + F K+ L S P SL
Sbjct: 113 VAEALKTIGVDFYSYLDQLLFSPGTVLTKTGTYFQV-FSQFRKVCYDRLHRSLP---SLV 168
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
P + + E+P+ G+ + + GE+EA ++L ++ +D + ++
Sbjct: 169 RAPALQSKLNIDSDEIPS-SVAGFDTPSDTLRALWPAGEAEARRRL-DTFADAQ--IDYY 224
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQL 178
K + D A KP T+ LS YL G +S R QCL Q+ + V+ + +L
Sbjct: 225 KSERDFPA--KPGTSQLSAYLAAGVISPR---QCLHAALQSNQGEFESGKVGAVTWINEL 279
Query: 179 LWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LWR+F+ + G P R + R + + W + + LAAW+EARTG P IDA M QL +
Sbjct: 280 LWREFYKHILVGYPRVSRHRAFRPETEALAWRDAPDELAAWQEARTGLPIIDAAMRQLLE 339
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQ 296
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 340 TGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAP 398
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
Y RI++P+S +K+D G +I+H+LP L + K+ ++ P
Sbjct: 399 YFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKDVHNP 437
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 22/311 (7%)
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEELGYKG--YGQEELSPFRGGESEALKKLRESIS 113
P P SLS LP + EI +P + LG + + Q + FRGGE+ AL++L E
Sbjct: 173 PTPKSLSPLPAI------EIGTLPDLAALGLETPIFDQRGVLKFRGGETAALERLEEYFW 226
Query: 114 DKEWVANFEKPK-----GDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHT 168
K + ++++ + GD S + SP+L GC+S RY Y+ + Q K+
Sbjct: 227 QKNCLKSYKETRNGMLGGDYS-------SKFSPWLASGCISPRYIYEAVQKYEQQRVKND 279
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
S L+ +LLWRD+F + N +PW D + W+E +TGYP +
Sbjct: 280 ST-YWLIFELLWRDYFRFICAKHGNKIFYPSGLQGLDLPWKEDWQRFQLWQEGKTGYPLV 338
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M +L G+M + R VA FLT+ ++ ++W G + F+ LLID D N GNW +
Sbjct: 339 DANMRELAATGFMSNRGRQNVASFLTK-NLGLNWIMGAEWFESLLIDYDVCSNYGNWNYT 397
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
+ + R ++ K YDP G Y+RH+LP L +P + I+EPW Q R +
Sbjct: 398 AGVGNDARGFRYFNIPKQSKDYDPLGEYLRHWLPELAAVPGDKIHEPWKLSSEEQKRYQV 457
Query: 349 IIGRDYPAPVV 359
+G DYP PVV
Sbjct: 458 RLGVDYPQPVV 468
>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|424808742|ref|ZP_18234131.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|342323694|gb|EGU19477.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
Length = 469
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 141/260 (54%), Gaps = 21/260 (8%)
Query: 108 LRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK 165
+R + D +E V ++ + + P+ + T+VLSPYL G LS+R QC+ +Y+
Sbjct: 209 IRTQLRDFCRERVQDYHQWRDFPA---REGTSVLSPYLAIGALSAR---QCVARLYRESA 262
Query: 166 KHTSPPVSLV--GQLLWRDFFYTVAFGTPNFDRMKGN-RICKQIPWSNDDELLAAWREAR 222
+ V +L+WR+F+ + PN + + ++ W ND E W E
Sbjct: 263 MSALSEGAQVWLSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEKFQRWCEGN 322
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A NN
Sbjct: 323 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANN 381
Query: 283 GNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT P
Sbjct: 382 GGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-- 439
Query: 342 IQTRAKCIIGRDYPAPVVSH 361
+ YPAP+V H
Sbjct: 440 ------AVNSVLYPAPLVDH 453
>gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 246
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 7/232 (3%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T+ LS YL+ G +S R +Q L + + T + +L WRDF+ + PN
Sbjct: 4 TSHLSRYLRTGEISIRTIWQALQET-----EATEGRATFEKELCWRDFYNMIYVSFPNQK 58
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
+ I W N+ E AW+E TG+P +DA M QL++ GWMH+ R A FLT+
Sbjct: 59 NEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTK 118
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNG 314
D+ + W G F ++LID D A N G W W S ++ Y RI++P + +K+DP G
Sbjct: 119 -DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKFDPTG 177
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+IR ++ L ++P +YI++P T+Q I+G+DYP P+V H K
Sbjct: 178 KFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDHKERRK 229
>gi|358638826|dbj|BAL26123.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. KH32C]
Length = 480
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 148/321 (46%), Gaps = 24/321 (7%)
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEELGY--KGYGQEELSPFRGGESEALKKLRESIS 113
P+ + + L P D +P + E+G+ GQ L G L I
Sbjct: 177 PIAEAAAGLAPKADG-----ERIPELAEIGFLPTNLGQLRLPAGMSGGRALLGDFVRRIG 231
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
D ++ KG + LS +L+FG LS R + ++ +
Sbjct: 232 DYAEARDYPSRKG---------VSYLSTHLRFGTLSIRELASLAW------TEGSAGAQT 276
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
+ +L+WR+F+ + + P +I W + EL AAW E RTGYP +DA M
Sbjct: 277 WLSELIWREFYQMILYHHPRVVDACFRPEYDRIVWDDAPELFAAWCEGRTGYPLVDAAMR 336
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QL G+MH+ R A FLT+ D+ + W +G F L D D A NNG W W + +
Sbjct: 337 QLNGTGYMHNRLRMVAASFLTK-DLGIDWRRGERYFAAQLNDYDLAANNGGWQWAASTGC 395
Query: 294 FYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
Q Y RI++PV+ +++DP+G +IR ++P L + YI+ PW P Q IGR
Sbjct: 396 DAQPYFRIFNPVTQSERFDPDGAFIRRYVPELARVASRYIHAPWKMPEAEQAACGVRIGR 455
Query: 353 DYPAPVVSHDSASKECKRKLG 373
DYPAPVV H A + ++
Sbjct: 456 DYPAPVVDHAQARERTLQRFA 476
>gi|422408691|ref|ZP_16485652.1| deoxyribodipyrimidine photo-lyase, partial [Listeria monocytogenes
FSL F2-208]
gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL
F2-208]
Length = 467
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 137/269 (50%), Gaps = 12/269 (4%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GE A +L I K +A+++K + P T+ LS YL+ G +S R +Q L
Sbjct: 193 SGERAANTRLANFI--KHDIADYDKARDFPEL---DKTSHLSRYLRTGEISIRTIWQALQ 247
Query: 159 DVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAW 218
+ + T + +L WRDF+ + PN + I W N+ E AW
Sbjct: 248 ET-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAW 302
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
+E TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D
Sbjct: 303 QEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQMLIDYDP 361
Query: 279 AINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
A N G W W S + Y RI++P + +K+DP G +IR ++ L ++P +YI++P
Sbjct: 362 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGEFIRKYVKELANLPDKYIHQPEK 421
Query: 338 APLTIQTRAKCIIGRDYPAPVVSHDSASK 366
T Q ++G+DYP P+V H K
Sbjct: 422 MTETEQKEHGLLLGKDYPFPIVDHKERRK 450
>gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase [Pseudomonas entomophila L48]
gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Pseudomonas entomophila L48]
Length = 484
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 182/375 (48%), Gaps = 24/375 (6%)
Query: 3 VKDYASTAGIEVFSPVSHT-----LFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL 57
++D A+ A +E +HT LF P ++ + GG+ + F ++ + L S P
Sbjct: 108 LRDSAARALLEQSGVATHTHLDQLLFKPGSVLTR-GGQYFQVFSQFKRVCLEHLHRSLPA 166
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+I+ P E++ G+ Q + GE EA ++L I E
Sbjct: 167 RAQRPKRQ-----APLDIASDPIPEQIDGFAIPPQSLRDHWPAGEEEAQRRLSRFID--E 219
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLV 175
V ++ + + P+ K T+ LSPYL G +S R + L + + + V
Sbjct: 220 TVEDYPQLRDLPA---KAGTSQLSPYLAAGVISPRQCLHAALASNHGEFDSGNAGVQTWV 276
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+LLWR+F+ + G P R + R+ + +PW N + L AW++ RTG+P IDA M Q
Sbjct: 277 NELLWREFYKHILVGYPQVSRHRAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQ 336
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSF 293
L + GWMH+ R VA FL++ ++ + W +G F R LID D A NNG W W S +
Sbjct: 337 LLETGWMHNRLRMIVAMFLSK-NLLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTD 395
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y RI++P + +++DP G +IR +LP L+ M ++ I+ P + T +
Sbjct: 396 AVPYFRIFNPTTQSQRFDPKGTFIRQWLPELQAMDEKTIHRPVKSADLFVTNN---YSSN 452
Query: 354 YPAPVVSHDSASKEC 368
Y +P+V DS+ +
Sbjct: 453 YTSPIVDLDSSRQRA 467
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 24/291 (8%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+ AL++L I + +A + + P+ +P T++LSP+L G +S +
Sbjct: 209 GEAGALERLDTFIENG--LAGYRSLRDFPA---RPNTSMLSPHLAMGEISPARIWHATRG 263
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ + +++WRDF Y + F P+ N PW + +LL W+
Sbjct: 264 LAGRFASEDI--IHFRKEVVWRDFSYHLLFHFPDLKSKNWNSKFDAFPWRSAPDLLKKWQ 321
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TGYP +DA M QL + G+MH+ R A FL + D+ + W +G F L+D+D A
Sbjct: 322 RGETGYPIVDAGMRQLWRHGYMHNRVRMIAASFLIK-DLMIDWREGERWFRDTLVDADPA 380
Query: 280 INNGNWLWLS-----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYE 334
N +W W++ S FF RI++P++ G+K+D G+YIR F+P LK MP YI+
Sbjct: 381 SNAASWQWVAGSGADASPFF----RIFNPITQGEKFDVEGHYIRTFVPELKAMPDAYIHR 436
Query: 335 PWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
P+ APLT+ A I+ Y P+V H K+ EA A Q L G+
Sbjct: 437 PFEAPLTVLKEAGVILDETYAKPIVDH-------KQARDEALAALQGLKGE 480
>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
Length = 502
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 21/368 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K D + AG +V S L P + K G P + F K A + +SPLP
Sbjct: 133 KTADKLAQAGYQVRSFPGSLLIEPWTLSTKQG-DPYQVFTPFWKAARSRVEFASPLPAPE 191
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S P E+++ + L + E P GE A ++ + D +A +
Sbjct: 192 SLKTPDQWPDSEELADWKLLPTLDWADEFPERWKP---GEDAAHAAWQKFLDDN--IAEY 246
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD-------VYQNVKKHTSPPVSL 174
+ PS + T+ LSP+L +G +S R Y + ++ +K+ + +S
Sbjct: 247 GTERDVPSHH---GTSRLSPHLHYGEISPRQIYAEAVEKMNRKQTATESFEKNVNVYLSE 303
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+G WR+F Y V + P+ W L AW++ +TGYP +DA M +
Sbjct: 304 IG---WREFGYHVLYHFPHTPENPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRE 360
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSF 293
L + GWMH+ R VA FLT+ D+ +HW +G F L+D+D A N W W S C +
Sbjct: 361 LWRTGWMHNRVRMIVASFLTK-DLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGAD 419
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y R+++P +K+DP GNY+R + P L D+P +Y++ P AP ++ +A +G+D
Sbjct: 420 AAPYFRVFNPTRQSEKFDPKGNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKD 479
Query: 354 YPAPVVSH 361
YP P+V H
Sbjct: 480 YPEPIVDH 487
>gi|419828231|ref|ZP_14351722.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|419833153|ref|ZP_14356614.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|422918665|ref|ZP_16952966.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02A1]
gi|423779915|ref|ZP_17713999.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|423839645|ref|ZP_17717748.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|423867628|ref|ZP_17721422.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|423999226|ref|ZP_17742419.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02C1]
gi|424011242|ref|ZP_17754110.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55B2]
gi|424021069|ref|ZP_17760839.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-59B1]
gi|424626283|ref|ZP_18064733.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-50A1]
gi|424627178|ref|ZP_18065542.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-51A1]
gi|424630973|ref|ZP_18069196.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-52A1]
gi|424637890|ref|ZP_18075887.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55A1]
gi|424641791|ref|ZP_18079663.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A1]
gi|424646307|ref|ZP_18084035.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A1]
gi|443525106|ref|ZP_21091302.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-78A1]
gi|341634315|gb|EGS59075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02A1]
gi|408010060|gb|EKG47937.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-50A1]
gi|408021264|gb|EKG58528.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A1]
gi|408021477|gb|EKG58729.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55A1]
gi|408029047|gb|EKG65873.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-52A1]
gi|408041001|gb|EKG77142.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A1]
gi|408061060|gb|EKG95655.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-51A1]
gi|408623304|gb|EKK96258.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|408638621|gb|EKL10508.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|408647223|gb|EKL18751.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|408648057|gb|EKL19488.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|408650477|gb|EKL21752.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|408849615|gb|EKL89628.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02C1]
gi|408864943|gb|EKM04356.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-59B1]
gi|408870969|gb|EKM10231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55B2]
gi|443456469|gb|ELT20140.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-78A1]
Length = 469
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 145/263 (55%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVKWGARLEWCNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|229588295|ref|YP_002870414.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
gi|229360161|emb|CAY47018.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
Length = 481
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 171/331 (51%), Gaps = 20/331 (6%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
G+ S + F P ++ K G + + F K+ L ++ P V+ P
Sbjct: 121 GVSFHSYLDQLFFQPGSVLTKTGTYFQV-FSQFRKVCYSRLHSALPRIVAA---PKAQAA 176
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
+ +PT E G++ Q + + GE EA ++L ++ +D++ ++ ++ + P+
Sbjct: 177 LTLKSDPIPTTVE-GFEPPSQALRALWPAGEDEARRRL-DAFADQQ-ISYYKDERDFPA- 232
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN----VKKHTSPPVSLVGQLLWRDFFYT 186
KP T+ LS YL G +S R QCL Q + ++ + +LLWR+F+
Sbjct: 233 --KPGTSQLSAYLAAGVVSPR---QCLHAALQTNGGEFESGDMGAITWINELLWREFYKH 287
Query: 187 VAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ G P R + R + + W N + LAAW+EARTG P IDA M QL + GWMH+
Sbjct: 288 ILVGYPRVSRHRAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRL 347
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPV 304
R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI+SP+
Sbjct: 348 RMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPL 406
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
S +K+D +G +I+H+LP L + K+ ++ P
Sbjct: 407 SQSEKFDSDGVFIKHWLPELAALNKKDVHNP 437
>gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
Length = 477
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L + GE A + L I+ K + ++E
Sbjct: 176 LFPEEEAAYGEQIARIP--------------LKHYSVGEKTARRCLNTFINQK--LRSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L V ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASVPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSAFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
Length = 469
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 150/278 (53%), Gaps = 21/278 (7%)
Query: 88 GYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGC 147
GY + + +P+ +LR+ ++ V ++ + + P+ + T+ LSPYL G
Sbjct: 193 GYPRVDSTPWAADFETVRAQLRDFCRER--VQDYHQARDFPA---REGTSSLSPYLAIGV 247
Query: 148 LSSRYFYQCLTDVYQ--NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICK 204
LS+R QC+ +Y ++ + + + +L+WR+F+ + PN + +
Sbjct: 248 LSAR---QCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGA 304
Query: 205 QIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEK 264
++ W ND+E W E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W
Sbjct: 305 RLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRW 363
Query: 265 GRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPV 323
G F LID D+A NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P
Sbjct: 364 GERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPE 423
Query: 324 LKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
L+ + YI++PWT P + YPA +V H
Sbjct: 424 LRSVSSAYIHQPWTYP--------AVNSVLYPARLVDH 453
>gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
gi|422689333|ref|ZP_16747445.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
Length = 477
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LKHYSVGEKTARRCLNTFIDQK--LRSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L + ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASMPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|422695016|ref|ZP_16753004.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
Length = 477
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYGEQIARIP--------------LTHYSVGEKTARRCLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASAPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|427730047|ref|YP_007076284.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
gi|427365966|gb|AFY48687.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
Length = 479
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 154/296 (52%), Gaps = 18/296 (6%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
+PT +ELG+ +SP GE+ A +KL E + + +++ + P+ T+
Sbjct: 191 LPTAKELGFVWDTDLIISP---GEAAAQEKLEEFTAKA--ITEYQEQRNFPAV---DGTS 242
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQ--NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
LS LKFG + R +Q T V + N ++ T+ + +L WR+F+ + P
Sbjct: 243 QLSAALKFGVIGIRTVWQATTAVLEDCNSEEVTTSIRTWQQELAWREFYQHAMYHFPELA 302
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
I K PW N++E AW E +TGYP +DA M Q+ + GWMH+ R VA FLT+
Sbjct: 303 EGAYRDIFKSFPWENNEEHFLAWCEGKTGYPIVDAAMRQMNEIGWMHNRCRMIVASFLTK 362
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGN 315
D+ ++ + G F + LID D + NNG W W + S + RI++P S +K+DP+
Sbjct: 363 -DLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPVRIFNPASQAQKFDPDAE 421
Query: 316 YIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRK 371
YIR +LP L+ + EY+ PL + RA +G YP P+V H ++ K +
Sbjct: 422 YIRQWLPELRSIDTEYLVTGKITPL--ERRA---VG--YPDPIVDHKKQQQQFKLR 470
>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
Length = 476
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 171/362 (47%), Gaps = 24/362 (6%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
+G + +L P +Q GG+ Y F K Q L S V P +
Sbjct: 122 SGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESD---VRSLPAPKRRE 178
Query: 70 VGYFEISEVPTVEELGYKGYGQEEL-SPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
G +S P + Y Q E + F GE ALK+LR +E V ++ + + P
Sbjct: 179 GGALPVSVAPAAFD-----YPQVEAGADFPAGEDAALKRLRAFC--REQVQDYLQQRDFP 231
Query: 129 SAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV 187
+ T+ LSPYL G LS R F + + Q ++ S + +L+WR+F+ +
Sbjct: 232 AI---AGTSSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHL 288
Query: 188 AFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
P R + ++ W N+D LL AW++ TGYP +DA M QL K GWMH+ R
Sbjct: 289 MVAYPALCRHRPFIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLR 348
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVS 305
A FL + D+ + W G F L+D D A NNG W W S + Y RI++P +
Sbjct: 349 MISASFLVK-DLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 407
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSAS 365
G+++DP G +IR +LP L D+P +++P L + + + + DYP P+V H A
Sbjct: 408 QGERFDPQGTFIRKWLPELADVPDNALHQP---HLWAEKQQRTL---DYPLPIVDHKQAR 461
Query: 366 KE 367
E
Sbjct: 462 LE 463
>gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
Length = 482
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 177/387 (45%), Gaps = 31/387 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ D + IE + + D I+ P Y F K W+S P S+
Sbjct: 113 IIDILKSNSIEFLHENWDQILHAPDEIRTGTKSPYTVYSPFWKN-----WSSKPKAKSVE 167
Query: 63 SLPPVGDVGYFE--------ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
+L + E + +PT +LG+ G+ +SP GE+ A ++L+E
Sbjct: 168 TLQNAAGLTEAEQEIAKQAGVIPLPTARDLGFIWDGELSISP---GEAAAQERLQEFTDS 224
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ-NVKKHTSPPVS 173
+ +++ + P T+ LS LKFG + R ++ + + + + T+ +
Sbjct: 225 A--ITEYQEQRNLPGV---DGTSRLSAALKFGVIGIRQVWEATLEAQEFSRSEETAASIR 279
Query: 174 LVGQ-LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
Q L WR+F+ + P K PW N+DE AW E RTGYP +DA M
Sbjct: 280 TWQQELAWREFYQHAMYNFPELAEGAYRDTFKNFPWQNNDEYFQAWCEGRTGYPIVDAAM 339
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
QL + GWMH+ R VA FLT+ D+ ++ + G F + LID D + NNG W W + S
Sbjct: 340 RQLNEMGWMHNRCRMIVASFLTK-DLMINPQLGEKYFMQKLIDGDLSANNGGWQWSTSSG 398
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
+ RI++P S +K+D G YIR ++ L+ + EY+ PL +Q+ IG
Sbjct: 399 MDPKPLRIFNPASQAQKFDGEGEYIRQWVSELRSVDTEYLVTGKIPPLELQS-----IG- 452
Query: 353 DYPAPVVSHDSASKECKRKLGEAYALN 379
YPAP+V H K+ + AL+
Sbjct: 453 -YPAPIVDHKVQQGLFKKMYQQQKALS 478
>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
Length = 469
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 141/260 (54%), Gaps = 21/260 (8%)
Query: 108 LRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK 165
+R + D +E V ++ + + P+ + T+VLSPYL G LS+R QC+ +Y+
Sbjct: 209 IRTQLRDFCRERVQDYHQWRDFPA---REGTSVLSPYLAIGALSAR---QCVARLYRESA 262
Query: 166 KHTSPPVSLV--GQLLWRDFFYTVAFGTPNFDRMKGN-RICKQIPWSNDDELLAAWREAR 222
+ V +L+WR+F+ + PN + + ++ W ND E W E
Sbjct: 263 MSALSEGAQVWLSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEKFQRWCEGN 322
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A NN
Sbjct: 323 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANN 381
Query: 283 GNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT P
Sbjct: 382 GGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-- 439
Query: 342 IQTRAKCIIGRDYPAPVVSH 361
+ YPAP+V H
Sbjct: 440 ------AVNSVLYPAPLVDH 453
>gi|410909117|ref|XP_003968037.1| PREDICTED: cryptochrome DASH-like [Takifugu rubripes]
Length = 521
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 188/383 (49%), Gaps = 23/383 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSP 56
+VKD + + V + TL++ D+ + + P Y F K +P++ P
Sbjct: 121 RVKDVCAQMKVNVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVESQCRVRPVF---P 177
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISD 114
P L LP E + T E+L K + S F GGES+AL +L+ D
Sbjct: 178 PPEHLKPLPQG-----LEEGTILTAEDLEQKEPVADPRSAFPCSGGESQALARLKHYFWD 232
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ VA +++ + +T SP+L GC+S RY Y + Y++ + +
Sbjct: 233 TDAVAVYKETRNGLIGV--DYSTKFSPWLALGCISPRYIYHQIKQ-YESERTANQSTYWV 289
Query: 175 VGQLLWRDFFYTVA--FGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
+ +LLWRD+F VA +GT F ++ G + K + W D +L AW+E +TG P++DA M
Sbjct: 290 IFELLWRDYFRFVAVKYGTKLF-QVNGLQD-KSVSWRKDMKLFNAWKEGKTGVPFVDANM 347
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
+L G+M + R VA FLT+ D+ + W G + F+ LL+D D N GNWL+ +
Sbjct: 348 RELATTGFMSNRGRQNVASFLTK-DLGLDWRMGAEWFEYLLVDHDVCSNYGNWLYSAGIG 406
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
+ NR ++ + G YD NG Y+R ++P L+ + ++ PWT I + A +G
Sbjct: 407 NDPRENRKFNMIKQGLDYDNNGEYVRLWVPELQRIMGADVHTPWTLSSAILSHAHLSLGE 466
Query: 353 DYPAPVVSHDSASKECKRKLGEA 375
YP P++ S+ +K+ A
Sbjct: 467 TYPTPIIVAPEWSRHFNKKMSGA 489
>gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
Length = 473
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 114 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 171
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L + GE A + L I K + ++E
Sbjct: 172 LFPEEEAAYREQIARIP--------------LKHYSVGEKTARRCLNTFIDQK--LRSYE 215
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L + ++ K T +L WRD
Sbjct: 216 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASMPSSLSKET-----FKKELAWRD 267
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 268 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 327
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 328 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 386
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 387 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 446
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 447 ASSKKQTLFLYEASKEIHQEMNN 469
>gi|448633777|ref|ZP_21674276.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
gi|445750468|gb|EMA01906.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
Length = 465
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 154/311 (49%), Gaps = 24/311 (7%)
Query: 65 PPVGDVGYFEISEV-----PTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
PP D E+++V PT+ +LG++ + E G EA L + + E V
Sbjct: 161 PPSAD----ELADVDGDAPPTLADLGFE---EPEADVPTAGTDEARALLDDFLD--ENVY 211
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQL 178
+E+ + P+ T+ LS +LKFG + R Y+ D + V QL
Sbjct: 212 EYEERRDFPA---DECTSRLSAHLKFGTIGIREVYERTQDAKEGTGGDRRESVREFQSQL 268
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F+ V F P+ I W ND+ELL AW++ TGYP +DA M QLR+
Sbjct: 269 AWREFYTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGETGYPIVDAGMRQLREE 328
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-Y 297
+MH+ R VA FLT+ D+ + W G + F L+D D A +NG W W + + Q Y
Sbjct: 329 AYMHNRVRMIVASFLTK-DLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPY 387
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
RI++P++ G+ YDPN YI+ ++P L+D E I++ W Q R+ +YP P
Sbjct: 388 FRIFNPMTQGEDYDPNAEYIKEYVPELQDAAPEVIHD-WNECSLTQRRSAAP---EYPDP 443
Query: 358 VVSHDSASKEC 368
VV H +E
Sbjct: 444 VVKHSERREEA 454
>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
Length = 469
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 142/263 (53%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y+
Sbjct: 206 FETIRNQLRDFCRERVQDYHQWRDFPA---RTGTSSLSPYLAIGALSAR---QCVARLYR 259
Query: 163 NVKKHTSPPVSLV--GQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
+ V +L+WR+F+ + PN + + + + W ND E W
Sbjct: 260 ESAMGVLGEGAQVWLSELIWREFYQHLVAREPNLSKSRDFHEWGSHLEWWNDHEKFQRWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSQLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRGLSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPAP+V H
Sbjct: 439 P--------AVNSVLYPAPLVDH 453
>gi|237654350|ref|YP_002890664.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
gi|237625597|gb|ACR02287.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
Length = 484
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 152/320 (47%), Gaps = 30/320 (9%)
Query: 55 SPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
+P P +LP + D+G+ + +G G G+ F E K+ R
Sbjct: 185 APKPAG-ETLPGLADIGFAPTNLAELNMPVGMSG-GKRLFDDF-AARIERYKRAR----- 236
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+F KG + LS +L+FG +S R + +
Sbjct: 237 -----DFPAVKG---------VSYLSTHLRFGTVSIRQL------AAHARARGGEGAETW 276
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +L+WRDF++ + + P + W + EL AAW EARTGYP +DA M Q
Sbjct: 277 LSELIWRDFYHQILWHHPQVVDRAFRPEYDAVQWDDAPELFAAWCEARTGYPIVDAAMRQ 336
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L + GWMH+ R VA FLT+ D+ V W G F L D D A NNG W W + +
Sbjct: 337 LDQTGWMHNRLRMIVASFLTK-DLGVDWRLGERYFAIRLNDYDLAANNGGWQWAASTGCD 395
Query: 295 YQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Q + RI++PV+ +K+DP G +IR +LP L +P ++I+ PWT QT + IG D
Sbjct: 396 AQPWFRIFNPVTQSEKFDPEGRFIRRYLPELARVPDKFIHAPWTMGGIDQTACRTKIGVD 455
Query: 354 YPAPVVSHDSASKECKRKLG 373
YP P+V H +A + ++ G
Sbjct: 456 YPGPIVDHAAARERTLQRFG 475
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 169/365 (46%), Gaps = 27/365 (7%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
G++V S V L P D I G+P Y F + W S P P L + + +
Sbjct: 139 GVKVQSFVDIGLIAP-DAIATQAGEPYKVYTPFWRN-----WQSKPKPQPLDAPQKLTGL 192
Query: 71 GYFE---ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
+E + +P++ EL + +++ GES AL L E+ D + ++ +
Sbjct: 193 ASYENLPVIPLPSLRELKFIN----DITLPESGESAALA-LLEAFCDGNGILRYQTERDF 247
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFY 185
P+ T+ LSP+L+FG + R ++ Q V+ + Q L WR+F+
Sbjct: 248 PA---HAGTSTLSPHLRFGTVGIRRVWEKAIAAQQLVRSDEDLAGITIWQQELAWREFYQ 304
Query: 186 TVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
V F P + PW +D E AW TGYP +DA M QL + GWMH+
Sbjct: 305 HVLFHFPALATGAYRPQMQSFPWDDDPEKFEAWCAGLTGYPIVDAAMRQLNQTGWMHNRC 364
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
R VA FLT+ D+ ++W+ G F + L+D D A NNG W W + S + RI++P S
Sbjct: 365 RMIVASFLTK-DLIINWQLGERYFMQKLLDGDLAANNGGWQWSASSGMDPKPLRIFNPAS 423
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSAS 365
+KYDP G YI +LP L+ + + P Q R+YP P+V H+
Sbjct: 424 QARKYDPEGEYILRWLPELQGLTTAELLSGNIPPHQCQR-------RNYPLPIVDHNIQQ 476
Query: 366 KECKR 370
++ KR
Sbjct: 477 QKFKR 481
>gi|407977733|ref|ZP_11158570.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. HYC-10]
gi|407415986|gb|EKF37567.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. HYC-10]
Length = 477
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 146/279 (52%), Gaps = 14/279 (5%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
G +A+ L I + + ++ K + PS + T+ LS +LK G +S R + + +
Sbjct: 207 GSDKAMNTLHTFIQKR--LTHYHKKRDIPSVF---GTSKLSRFLKTGTISIRTVFHAINE 261
Query: 160 --VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAA 217
+Y++ + T + +L WRDF++ + P + + N + I W+ D+ L A
Sbjct: 262 EALYEDEGRET-----FIKELAWRDFYHMIFAHYPKMKQKEINPSFEGIKWNEDEALFEA 316
Query: 218 WREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSD 277
W + TG+P +DA M QL + GWMH+ R A FLT+ D + W KG F + L+D D
Sbjct: 317 WCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFLTK-DYLIDWRKGEAYFAKKLVDYD 375
Query: 278 WAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW 336
A N G + W S + Y RI++P + K++D +G YIR ++P LK + +++I+EP
Sbjct: 376 EASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRFDSSGEYIRRYVPELKHVDEKWIHEPS 435
Query: 337 TAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
P+ Q ++ C+IG YP P V H K+ EA
Sbjct: 436 KMPIDEQMKSGCVIGDTYPLPTVDHQERRKKAISLFEEA 474
>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
53653]
gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
53653]
Length = 445
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 125/230 (54%), Gaps = 25/230 (10%)
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQLLWRDFFYTVAFGTPN 193
AT+ LSPYL FGCLS ++ +K P + V QL WRDF + V P+
Sbjct: 234 ATSRLSPYLHFGCLSP-------VELVHRARKSGGPGADAFVRQLAWRDFHHQVLAARPD 286
Query: 194 FD----RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCV 249
R +G+R W +DD +AAW+ RTGYP +DA M QL GWMH+ AR V
Sbjct: 287 ASHTDYRPRGDR------WRSDDAAVAAWKAGRTGYPIVDAGMRQLAAEGWMHNRARLLV 340
Query: 250 ACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKK 309
A FLT+ ++V W G F LL+D D A N NW W++ + + NR+ +P++ ++
Sbjct: 341 ASFLTK-TLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPLAQARR 399
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+DP+G Y+R ++P L D+P ++ PWT P +T YP P+V
Sbjct: 400 FDPDGTYVRRWIPELADLPGRQVHTPWTLPDPERT------ALPYPPPIV 443
>gi|426411468|ref|YP_007031567.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. UW4]
gi|426269685|gb|AFY21762.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. UW4]
Length = 480
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 175/352 (49%), Gaps = 21/352 (5%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GIEV + LF P ++ + G + + F K+ + L + P SL P
Sbjct: 121 GIEVHRYLDQLLFKPGSVLTRTGTYFQV-FSQFRKVCYERLHHALP---SLVRAPYKQAP 176
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
+P E G+ G S + GE+EA ++L ++ S+ + + +++ + P+
Sbjct: 177 LNIASDAIPLSVE-GFATPGDHLRSLWPAGETEARRRL-DNFSEAQ-IEHYQNERDFPA- 232
Query: 131 YLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAF 189
KP T+ LS YL G +S R + L + + V+ + +LLWR+F+ +
Sbjct: 233 --KPGTSQLSAYLAAGVISPRQCLHAALNSNQGEFESGNTGAVTWINELLWREFYKHILV 290
Query: 190 GTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHC 248
G P R + R + + W + + LAAW++ARTG P IDA M QL GWMH+ R
Sbjct: 291 GYPRVSRHRAFRPETEALAWRDAPDELAAWQQARTGLPIIDAAMRQLLATGWMHNRLRMV 350
Query: 249 VACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFG 307
VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P+S
Sbjct: 351 VAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQS 409
Query: 308 KKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+K+DP G +I+ +LP L + K+ ++ P G DYP+P+V
Sbjct: 410 EKFDPEGVFIKQWLPELAGLNKKDVHNP-------ANLGGLFGGVDYPSPIV 454
>gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
Length = 477
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LKHYSVGEKTARRCLNTFIDQK--LRSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L + ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASMPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
ymp]
gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
ymp]
Length = 477
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 185/390 (47%), Gaps = 38/390 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP----LP 58
V Y + I S + LF P I+ ++GG + Y F K+ + L + P P
Sbjct: 114 VAAYLAQQDIAWHSHLDQLLFKPGSILTRSGGYFQV-YSQFRKVCYEHLHMALPGLVARP 172
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
V+ + P D +P + G+ ++ S + GE A ++L E +D++ +
Sbjct: 173 VAQAPTPLASDA-------IPHAVD-GFAMPSEQLRSLWPAGEEAARQRL-ERFADEQ-I 222
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVSL 174
++ + P+ P T+ LSPYL G LS R QCL + + V+
Sbjct: 223 GYYKDERDFPAL---PGTSQLSPYLAAGVLSPR---QCLHAALAANRGEFDSGNAGVVTW 276
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
V +LLWR+F+ + G P R + R + + W E LAAW++ RTG P IDA M
Sbjct: 277 VNELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRRAPEELAAWQQGRTGLPIIDAAMR 336
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSS 292
QL + GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S +
Sbjct: 337 QLLETGWMHNRLRMIVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGT 395
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
Y RI++P+S +K+D G +IRH+LP L + K I++P +
Sbjct: 396 DAAPYFRIFNPISQSQKFDSEGRFIRHWLPELAGLNKRDIHDP-------ASLGGLFAPA 448
Query: 353 DYPAPVVSHDSASKECKRKLGEAYALNQKL 382
YP P+V S+ +R L L Q++
Sbjct: 449 GYPRPIV---DLSRSRERALAAFRNLGQEV 475
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 188/373 (50%), Gaps = 17/373 (4%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA--GQPLWASSPLPVSLSSLPPVG 68
G+ + S HTL++P D+ + P L + +F K + + +P LSSLP +
Sbjct: 127 GVRLKSFWGHTLYHPDDLPFEIKQLPEL-FTTFRKDVEKNSSVNPTFSIPKKLSSLPKI- 184
Query: 69 DVGYFEISEVPTVEELGYKG--YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKG 126
DVG E+PT+ +L + + + F+GGE+ A ++++ ++++ +++ +
Sbjct: 185 DVG-----ELPTLSDLNLEKPPLNSQGVLEFKGGETAAKERVKNYFWQQDYLKVYKETRN 239
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV-YQNVKKHTSPPVSLVGQLLWRDFFY 185
++ SP+L GCLS RY Y+ + + YQ VK ++ L+ +L+WRD+F
Sbjct: 240 GMLG--ANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRVKNQST--YWLIFELIWRDYFR 295
Query: 186 TVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ N K IPW D E W+ +TG+P +DA M +L G+M +
Sbjct: 296 FICQKHGNKIFHKSGLQGIAIPWQEDWEKFRKWQAGQTGFPLVDANMRELLATGFMSNRG 355
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVS 305
R VA FLT+ ++ ++W+ G + F+ LLID D N GNW + + + R ++
Sbjct: 356 RQNVASFLTK-NLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRGFRYFNIPK 414
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSAS 365
K YDP G Y++H+LP L +P ++EPW Q R IG DYP P++ +
Sbjct: 415 QAKDYDPEGKYVKHWLPELGKVPPAKVHEPWKLLPVEQDRFGVKIGVDYPEPIIDLWQSV 474
Query: 366 KECKRKLGEAYAL 378
KE ++K A +
Sbjct: 475 KENEKKYNRALQM 487
>gi|443473438|ref|ZP_21063462.1| Deoxyribodipyrimidine photolyase [Pseudomonas pseudoalcaligenes
KF707]
gi|442904175|gb|ELS29291.1| Deoxyribodipyrimidine photolyase [Pseudomonas pseudoalcaligenes
KF707]
Length = 476
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 181/373 (48%), Gaps = 30/373 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V+ G+++ S + F P ++ ++GG + Y F K+ Q L S LP L
Sbjct: 113 QVRACLGADGVDLRSHLDQLFFRPGSLLTQSGGYFQV-YSQFRKVCYQRL--HSALPSCL 169
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P D+G S+VP G+ ++ + GE+ A ++L + W +
Sbjct: 170 PLPGPQQDLGI--PSDVPPCTVDGFPAPSEQLRQLWPAGEAAARERLDAFALEALWC--Y 225
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQ 177
+ + P+ + T+ LSPYL G +S R QCL N + V + +
Sbjct: 226 DDRRDFPA---RAGTSQLSPYLAAGVISPR---QCLHAALANNQGEFDSGNPGAVCWINE 279
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ + G P R + R + W + L AW++ RTG P +DA M QL
Sbjct: 280 LLWREFYKHILVGYPRVSRHRAFRQETDALAWRRAPDELEAWQQGRTGIPIVDAAMRQLL 339
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFY 295
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S +
Sbjct: 340 ATGWMHNRLRMIVAMFLTK-NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAA 398
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR-DY 354
Y RI++P+S +K+DP+G+++RH+LP L + K I++P + + G Y
Sbjct: 399 PYFRIFNPISQSQKFDPDGHFLRHWLPELAHLDKRDIHDP--------SALGGLFGVPGY 450
Query: 355 PAPVVSHDSASKE 367
P PVV SAS+E
Sbjct: 451 PQPVVDL-SASRE 462
>gi|386334355|ref|YP_006030526.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
gi|334196805|gb|AEG69990.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
Length = 548
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 129/234 (55%), Gaps = 11/234 (4%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD- 195
+ LS +L+FG +S R + + + + + +L+WRDF++ + P+
Sbjct: 292 SYLSTHLRFGTVSIR---TLAARAHAAMLHGSRGAATWLSELIWRDFYFMILHHRPDLAE 348
Query: 196 ----RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
R + +RI + + D AAWR+ARTGYP +DA M+Q+R+ G+MH+ R A
Sbjct: 349 GASFRPEFDRI-RWVEGETGDARFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVAAS 407
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKY 310
FL + D+ V W +G F L D D A NNG W W + S Q + RI++PV+ +K+
Sbjct: 408 FLIK-DLGVDWRRGEHYFADALNDFDLAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKF 466
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
DP G++IR +LP L +P Y++ PWTAP + A +G YP P+V H +A
Sbjct: 467 DPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAA 520
>gi|422734279|ref|ZP_16790573.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341]
gi|315169001|gb|EFU13018.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341]
Length = 477
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 183/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A ++L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LTHYSVGEETARRRLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASASSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ A W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
49957]
gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
49957]
Length = 477
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 7/232 (3%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T LSP+L +G +S R +Q + + ++ ++ + ++LWR+F Y + P
Sbjct: 239 TARLSPHLHWGEVSPRQAWQAVAEGGKSGGH-----ITWLKEILWREFAYHTLWHRPELP 293
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
+ PW DD LL AW+ RTGYP +DA + QL + GWMH+ R V L +
Sbjct: 294 DTPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVVGSLLVK 353
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDPNG 314
+ W++G F L+D+D A N+ NW W++ S Y RI++P+ G+K+DP G
Sbjct: 354 -HLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEKFDPEG 412
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
Y+RHF+P L +P ++++PW A + A +G DYPAP+V H+ K
Sbjct: 413 RYVRHFVPELARLPDAWLHKPWQASPEMLRAAGLRLGHDYPAPIVDHEGGRK 464
>gi|423413073|ref|ZP_17390193.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|423431142|ref|ZP_17408146.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
gi|401102633|gb|EJQ10619.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|401118167|gb|EJQ25999.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
Length = 476
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 138/237 (58%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+ YL FG +S + + L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLATYLSFGQISVKLMFHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW+ ++ELL W++ TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+D+P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERA 465
>gi|424870229|ref|ZP_18293891.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393165930|gb|EJC65977.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 483
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 17/267 (6%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE +KLR + D + +++ + P+ +P T++LSP+L G +S +
Sbjct: 211 GEEGGHEKLRAFVEDA--LDGYKENRDYPA---RPTTSMLSPHLALGEISPARIWDATRG 265
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ Q V + V ++ WR+F Y + F P N W ND AWR
Sbjct: 266 LSQRVP--AADIVHFRKEIAWREFSYHLLFHFPRLASANWNDRFDGFEWRNDSGDFQAWR 323
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TGYP +DA M QL + GWMH+ R VA FL + D+ + W +G F L+D+D A
Sbjct: 324 RGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIK-DLMIDWRRGEAWFRDTLVDADPA 382
Query: 280 INNGNWLWLS-----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYE 334
N +W W++ S FF RI++PV G+K+DP+G+Y+R ++P L+++ +YI+
Sbjct: 383 NNAASWQWVAGSGADASPFF----RIFNPVLQGEKFDPDGDYVRTYVPELRELGAKYIHR 438
Query: 335 PWTAPLTIQTRAKCIIGRDYPAPVVSH 361
P+ AP ++ A +G+ YP P+V H
Sbjct: 439 PFEAPTSMLDEAGITLGQTYPKPIVDH 465
>gi|423202670|ref|ZP_17189249.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
gi|404614866|gb|EKB11845.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
Length = 473
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 152/276 (55%), Gaps = 32/276 (11%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+EAL++L +I ++ V ++ + + P+ T+VLSPYL G +S R QC+
Sbjct: 206 GEAEALRRL--NIFLEQAVLDYGETRDFPAIA---GTSVLSPYLAAGIISPR---QCVAA 257
Query: 160 VYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND 211
+ Q + + P + +L+WR+F+ + P + NR K +PWS D
Sbjct: 258 LQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPT---LSMNRPFKPETAALPWSWD 314
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ AAW E RTGYP +DA M L GWMH+ R VA FLT+ D+ +HW G D F
Sbjct: 315 PDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 272 LLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
LID D A NNG W W + + + Y R+++P + G+++DP G +IR+++ L D+P
Sbjct: 374 RLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEFIRNWVTELADIPAA 433
Query: 331 YIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
Y+++P W L ++ R +DYPAP+V H A
Sbjct: 434 YVHQPHDW---LRLKGR------QDYPAPMVDHAVA 460
>gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 478
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 153/308 (49%), Gaps = 24/308 (7%)
Query: 85 GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLK 144
+ Q ++ P++G E AL L E D+ + +++ + PS T+ LSPYL
Sbjct: 188 ALQSIAQVDIDPWQGSEQVALDALDEFCKDR--IKAYKRDRDIPSL---DGTSTLSPYLA 242
Query: 145 FGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV---GQLLWRDFFYTVAFGTPNFDRMKG-N 200
G LS R +Q + Q V S P + +L+WRDF+ + + P+ + K
Sbjct: 243 IGSLSVRQCWQ----MSQQVSPSGSKPEGIATWQSELIWRDFYRHLIYFFPHVCQYKAFK 298
Query: 201 RICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFV 260
+ +PW D L AW + RTGYP +DA M QL + GWMH+ R A FL++ +F+
Sbjct: 299 QETDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMFLSKH-LFI 357
Query: 261 HWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDPNGNYIRH 319
W G F + LID D A NNG W W + + Y RI++P+ +++D G ++R
Sbjct: 358 DWRLGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDSKGTFLRQ 417
Query: 320 FLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALN 379
++P L + + I+ P P+T++ YPAP+V H A + K+ E A N
Sbjct: 418 YVPELASLDDKRIHNP--DPITVKKLG-------YPAPIVDHKQAVVQTKQWFKELDASN 468
Query: 380 QKLNGQVS 387
++ Q S
Sbjct: 469 KEFYSQES 476
>gi|374329028|ref|YP_005079212.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
gi|359341816|gb|AEV35190.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
Length = 471
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 131/240 (54%), Gaps = 7/240 (2%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T+ LSP+L FG +S + L + T +L WR+F Y++ F P+
Sbjct: 236 TSRLSPHLHFGEISPNQIWWALGS-----HEETRDIDHFRSELGWREFSYSLLFNNPSLP 290
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
+ N PW +DD+ L+AW++ +TG P +DA M +L + G+MH+ R V FL +
Sbjct: 291 KSNLNEKFDNFPWLSDDQRLSAWQKGQTGIPIVDAGMRELWQTGYMHNRLRMIVGSFLVK 350
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNG 314
++ + W G + F L+D+D A N+ +W W++ C + Y RI++P+ G+K+D +G
Sbjct: 351 -NLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKFDAHG 409
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGE 374
Y R FLP LKD+P +Y++ PW AP I A +G +YP P+V+ + E R E
Sbjct: 410 EYTRRFLPELKDLPDKYLFRPWEAPKDILQGAGVTLGENYPLPIVNLKKSRDEALRAFEE 469
>gi|406658770|ref|ZP_11066910.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
gi|405578985|gb|EKB53099.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
Length = 470
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 140/273 (51%), Gaps = 12/273 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE AL++L I +E + ++ + P T+ LS YL+ G ++ R Y ++
Sbjct: 197 GEEAALEQLHLFI--EEGLEAYDVSRDYPEY---DGTSRLSVYLRTGEINIRTVYAAISK 251
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
K + + +L+WR+F++ + P+ + I W ND L W+
Sbjct: 252 A-----KASKGKAVFIKELVWREFYHMIYVNHPHQKQEPLQAQFAAIEWENDQALFEQWK 306
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TGYP +DA M QL + GWMH+ R VA FL + D+ + W G + F L+D D A
Sbjct: 307 AGTTGYPMVDAAMRQLSQTGWMHNRLRMIVASFLVK-DLLIDWRWGEEYFQEALMDYDSA 365
Query: 280 INNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++P + K++DP G++I+ ++P L+ +P +++YEPW
Sbjct: 366 SNIGGWQWAASTGTDAVPYFRIFNPTTQAKRFDPKGHFIKTYVPQLEALPLKWLYEPWKL 425
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRK 371
PL +Q RDYP P+VSHD K+ K
Sbjct: 426 PLDLQDDLGFKPERDYPLPIVSHDIQRKKAIAK 458
>gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
Length = 478
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 150/279 (53%), Gaps = 22/279 (7%)
Query: 93 ELSP-FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
E++P F GE AL KLR + +E V ++++ + PS T+ LSPYL G LS R
Sbjct: 196 EIAPQFIAGEQAALAKLR--LFCRERVQDYQRDRDIPSI---DGTSQLSPYLAIGTLSPR 250
Query: 152 YFYQCLTDVY-QNVKKHTSPP---VSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQI 206
QC+ + +N SP S + +L+WR+F+ + P R + + I
Sbjct: 251 ---QCVNRLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIEWTQHI 307
Query: 207 PWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGR 266
W+ D++ AW+ +TGYP +DA M QL + GWMH+ R VA FL + D+ + W KG
Sbjct: 308 QWNPDEDAFTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVK-DLLIDWRKGE 366
Query: 267 DVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
F LID A NNG W W + + + RI++P + GKK+DP G +I +LP L+
Sbjct: 367 HYFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWLPELR 426
Query: 326 DMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
++P+++I+EP T + Q + +YP P+V H A
Sbjct: 427 NVPEQFIHEPHTWAESNQ------VTLNYPTPIVDHKQA 459
>gi|424590980|ref|ZP_18030413.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
gi|408033486|gb|EKG70033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
Length = 469
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 150/277 (54%), Gaps = 21/277 (7%)
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
Y + + +P+ +LRE ++ V ++ + + P+ + T+ LSPYL G L
Sbjct: 194 YPRIDSTPWAADFETVRAQLREFCRER--VQDYHQARDFPA---QEGTSSLSPYLAIGVL 248
Query: 149 SSRYFYQCLTDVYQ--NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQ 205
S+R QC+ +Y ++ + + + + +L+WR+F+ + PN + + +
Sbjct: 249 SAR---QCVARLYHESSMGELSEGAQAWLSELIWREFYQHLVAIEPNLSKSRDFVEWGAR 305
Query: 206 IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
+ W ND+E W E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G
Sbjct: 306 LEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWG 364
Query: 266 RDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
F LID D+A NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L
Sbjct: 365 ERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPEL 424
Query: 325 KDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+ + YI++PWT P + YPA +V H
Sbjct: 425 RSVSSAYIHQPWTYP--------AVNSVLYPARLVDH 453
>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|384187171|ref|YP_005573067.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675484|ref|YP_006927855.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452199537|ref|YP_007479618.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174613|gb|AFV18918.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452104930|gb|AGG01870.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 476
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 139/237 (58%), Gaps = 8/237 (3%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS----PPVSLVGQLLWRDFFYTVAFGTP 192
++L+PYL FG +S + + L + ++ ++ S S + QL+WR+F Y + + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLIN--KSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N+ + PW+ ++ELL W++ +TGYP+IDA M +L + G+MH+ AR VA F
Sbjct: 290 FTVYRPLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + + + W++G F L+D+D A N W W++ S Y RI++P++ G+K+D
Sbjct: 350 LVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
NG YIR ++P L+ +P +YI++PW AP I ++ +G YP P+V H +A +
Sbjct: 409 KNGEYIRRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERA 465
>gi|429212758|ref|ZP_19203923.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M1]
gi|428157240|gb|EKX03788.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M1]
Length = 475
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 177/372 (47%), Gaps = 31/372 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
VK + AG+ S + LF P ++ + GG + + F KL Q L + P S
Sbjct: 115 VKRRLAEAGVGFHSHLDQLLFAPGSLLTRGGGYFQV-FSQFRKLCYQRLATALP-----S 168
Query: 63 SLPPVGDVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
LP E++ P EL G+ + GE A ++L D +A++
Sbjct: 169 CLPAPPAQAPLEVNSAPVPRELPGFTPSATLAREFWPAGEKAAGERLDGFAEDG--LAHY 226
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQ 177
+ + P T+ LS YL G LS R QCL N + PV+ + +
Sbjct: 227 HERRDRPDL---DGTSQLSAYLAAGVLSPR---QCLHAALANNRGEFESGGPGPVAWINE 280
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ + G P R + R + +PW + L AW++ RTG+P IDA M QL
Sbjct: 281 LLWREFYKHILVGFPQVSRGRAFRAPTEALPWRHAPAELEAWQQGRTGFPIIDAAMRQLL 340
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFY 295
GWMH+ R A FL++ ++ + W +G F R L+D D A NNG W W S +
Sbjct: 341 ATGWMHNRLRMLTAMFLSK-NLLIDWREGERWFMRHLVDGDLAANNGGWQWSASTGTDAA 399
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y R+++P++ +++DP+G ++R +LP L + E ++EP +R YP
Sbjct: 400 PYFRLFNPLAQSRRFDPHGRFLRQWLPELAGLDNESLHEP--------SRLGLFGAPGYP 451
Query: 356 APVVSHDSASKE 367
AP++ +AS+E
Sbjct: 452 APMLDL-AASRE 462
>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
Length = 479
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 2/227 (0%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T+ LSPYL+FG LS + + + + V +L WR+F Y + F P+
Sbjct: 237 TSRLSPYLRFGHLSPQQVLAAVRHAADAGEVRGTDVEKFVSELYWREFSYHLLFHFPDLA 296
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
++ NR W+ D ++ AW+ TGYP IDA M QL + GWMH+ R A FL +
Sbjct: 297 QVNFNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRMVAASFLIK 356
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDPNG 314
V W +G F L+D+D A N +W W++ S Y RI++PV+ G+K+DP+G
Sbjct: 357 -HALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQGEKFDPDG 415
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
Y+R F+P L +P I++PW AP + +A +G YP P+V H
Sbjct: 416 AYVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVDH 462
>gi|381168517|ref|ZP_09877711.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
gi|380682377|emb|CCG42529.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
Length = 482
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 171/371 (46%), Gaps = 22/371 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGK----PPLTYQSFLKLAGQPLWASSPLP 58
+K + GIEV S + LF P +I ++G P
Sbjct: 113 IKAALTRHGIEVRSFKAGLLFEPWEIATRSGTPFRVFTPFWRSCLAAPPPDRPLPPPAAL 172
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
S+PP D+G + + +PT + + G + P GE+ A +L+ + + +
Sbjct: 173 RPCESVPPGDDLGSWRL--LPTAPD--WAGGLNADWQP---GEAGAEARLQIFLDQR--L 223
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
+ + P + T+ LSP+L FG +S R + D + + +L
Sbjct: 224 KAYAVARDLPG---QAGTSRLSPHLAFGEISPRRAFHAARDAAGSGNGLDR----FLAEL 276
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F + F P+ PW +D ELL AW+ RTG+P +DA M +L
Sbjct: 277 GWREFCAHLLFTVPDLPEQPLRGEFAAFPWRDDPELLVAWQRGRTGFPLVDAGMRELWTT 336
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQY 297
GWMH+ R VA FL + D+ + W G D F L+D+D A N +W W++ C + +
Sbjct: 337 GWMHNRVRMVVASFLVK-DLLLSWRLGADWFRDTLVDADLASNVASWQWVAGCGADAAPF 395
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
RI++P G+K+DP+G Y+R + P L +P ++++P A I +A +GR YP P
Sbjct: 396 FRIFNPTLQGEKFDPDGRYVRRWCPELAGLPDRWLHQPGRASDIILRQAGVSLGRSYPHP 455
Query: 358 VVSHDSASKEC 368
+V HD A +
Sbjct: 456 IVDHDVARRRA 466
>gi|383783458|ref|YP_005468024.1| deoxyribodipyrimidine photo-lyase family protein [Leptospirillum
ferrooxidans C2-3]
gi|383082367|dbj|BAM05894.1| putative deoxyribodipyrimidine photo-lyase family protein
[Leptospirillum ferrooxidans C2-3]
Length = 483
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 181/388 (46%), Gaps = 23/388 (5%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+ +K + G++V + L +P ++ KNG P + F K L S+P P
Sbjct: 107 LSLKKELLSTGLKVETYPPDLLSDPESMMGKNG--PYRVFGQFWKRLRPALDPSAPFPAP 164
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYK----GYGQEELSPFRGGESEALKKLRESISDKE 116
PP V ISE + E G+ + +E + GE +A L + ++
Sbjct: 165 ERIFPPEFSV----ISEY--LPEWGWNPSRPDWAKEMREKWIPGEEQAHMTLNTFLDER- 217
Query: 117 WVANFEKPKG--DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ ++EK + D Y ++LSP+L G ++SR + D +
Sbjct: 218 -LQSYEKNRDRLDHEGY-----SMLSPFLHAGEITSRQIVRATLDKMHEHPGWQNDGEKF 271
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +L WR+F + P PW ++ E L AW+ +TGYP IDA M Q
Sbjct: 272 LSELGWREFSRYLLIHFPKMISEPFQPKFSSFPWKDNPEALLAWKSGKTGYPVIDATMRQ 331
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF- 293
L G++ + +R A FLT+ D+ + W++G F L+D D A N +W W+S
Sbjct: 332 LWAIGYIPNRSRMISASFLTK-DLLISWKEGARWFRETLVDHDLANNTVSWQWVSGMGVD 390
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y RIY+PV G++YDP G IR ++P +K +P ++I+ PW AP + RA I+G+
Sbjct: 391 AAPYFRIYNPVLQGERYDPEGIAIRKWIPEIKGLPNQWIHRPWEAPEPLLKRAGIILGKT 450
Query: 354 YPAPVVSHDSASKECKRKLGEAYALNQK 381
YPAP+V H A +E G QK
Sbjct: 451 YPAPIVDHSYARQEALALFGALGGKGQK 478
>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 125/208 (60%), Gaps = 14/208 (6%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP-VSLSSL- 64
A G+E SHTL+N I++ N PPLT++ F + + PLP V+ +
Sbjct: 153 AQQFGVETIVRNSHTLYNLDRIVEMNNNSPPLTFKRFQTIVSRLELPRRPLPSVTQQQMD 212
Query: 65 ---PPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVA 119
PV D + ++ +P++EELG++ G L+P +RGGESEAL++LR+ + K WV+
Sbjct: 213 KCGTPVAD-NHDQLYSIPSLEELGFRTGG---LAPAVWRGGESEALERLRKHLEKKVWVS 268
Query: 120 NFEKPKGDP-SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
+ E + + S Y PA LSPYL+FGCLS R FY L + Y + K SPP+SL GQL
Sbjct: 269 HLEHSRANTCSLYASPAG--LSPYLRFGCLSCRVFYYNLREHYIRLCKGCSPPLSLFGQL 326
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQI 206
LWR+FFYT A PNFDRM GN IC Q+
Sbjct: 327 LWREFFYTAATNNPNFDRMAGNPICVQV 354
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 21/136 (15%)
Query: 245 ARHCVACFLTRGDMFVHWEKGR---------------------DVFDRLLIDSDWAINNG 283
AR VACFLTRGD+++ WE G VF+ LL+D+DW++N G
Sbjct: 453 ARRAVACFLTRGDLWISWECGMKVGGAAWSRRRRRRLSARLLPQVFEELLLDADWSVNAG 512
Query: 284 NWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQ 343
+W+WLSCS+FF Q+ + Y PV FG++ DP+G+YIR ++P+LKD P YIYEPW AP +Q
Sbjct: 513 SWMWLSCSAFFQQFFKCYCPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQ 572
Query: 344 TRAKCIIGRDYPAPVV 359
A C++G DYP P++
Sbjct: 573 KAANCVVGVDYPRPMI 588
>gi|404317161|ref|ZP_10965094.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi CTS-325]
Length = 468
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 2/239 (0%)
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
T+ LSP+L+FG +S+R + + + +L+WRDF Y + +
Sbjct: 227 GTSRLSPHLRFGEISARQAWYATLAFMDEHHSARAGGEKFLSELIWRDFNYHQLYHRRDI 286
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
R I W +D AWR +TG+P IDA M QL GWMH+ R VA FLT
Sbjct: 287 SRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLT 346
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPN 313
+ ++ + W KG + F L+D D A N G+W W++ C Y R+++P+ G+K+D
Sbjct: 347 K-NLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAE 405
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
G Y+RH++P L + +++++P+ AP + T A +G YP P++ ++ +E +++L
Sbjct: 406 GQYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDLQASQREARKRL 464
>gi|388470348|ref|ZP_10144557.1| deoxyribodipyrimidine photolyase [Pseudomonas synxantha BG33R]
gi|388007045|gb|EIK68311.1| deoxyribodipyrimidine photolyase [Pseudomonas synxantha BG33R]
Length = 480
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 174/342 (50%), Gaps = 20/342 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V T GI S + F P ++ K G + + F K+ L ++ P V+
Sbjct: 113 VAQTLQTQGITFHSYLDQLFFQPGSVLTKTGTYFQV-FSQFRKVCYNRLHSALPRQVATP 171
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
DV + VPT + G++ + + + GE EA ++L ++ +D++ ++ ++
Sbjct: 172 KTQARLDV---KSDPVPTTVD-GFESPSETLRALWPAGEDEARRRL-DAFTDEQ-ISYYK 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQL 178
+ P+ KP T+ LS YL G +S R QCL Q + ++ + +L
Sbjct: 226 DERDFPA---KPGTSQLSAYLAAGVVSPR---QCLHAALQTNQGEFESGDIGAITWINEL 279
Query: 179 LWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LWR+F+ + G P R + R + + W N E LAAW++ARTG P IDA M QL +
Sbjct: 280 LWREFYKHILVGYPRVSRHRAFRPETEALAWRNAPEDLAAWQQARTGLPIIDAAMRQLLE 339
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQ 296
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 340 TGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAP 398
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
Y RI+SP+S +K+D +G +I+ +LP L + K+ ++ P A
Sbjct: 399 YFRIFSPLSQSEKFDADGIFIKRWLPELATLNKKEVHNPAAA 440
>gi|398866188|ref|ZP_10621688.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM78]
gi|398241525|gb|EJN27175.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM78]
Length = 488
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 177/356 (49%), Gaps = 29/356 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GIEV + LF P ++ K G + + F K+ + L S P V + ++
Sbjct: 128 GIEVRRYLDQLLFKPGSVLTKTGSYFQV-FSQFRKVCHERLHHSLPGLVRTPAAQAALNI 186
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
I+ VE EL P GE EA ++L +S ++ + + ++ + P+
Sbjct: 187 ASDAIAT--RVEGFDPPPDSLRELWP--AGEDEARRRL-DSFTEMQ-IDYYQSERDFPA- 239
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN----VKKHTSPPVSLVGQLLWRDFFYT 186
KP T+ LS YL G +S R QCL Q+ ++ V+ + +LLWR+F+
Sbjct: 240 --KPGTSQLSAYLAAGVISPR---QCLHAAMQSNQGEIESGKVGAVTWINELLWREFYKH 294
Query: 187 VAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ G P R + R + + W N E LAAW++ RTG P IDA M QL + GWMH+
Sbjct: 295 ILVGYPRVSRHRAFRPETEALAWRNAPEELAAWQQGRTGLPIIDAAMRQLLETGWMHNRL 354
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPV 304
R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P+
Sbjct: 355 RMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPL 413
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR-DYPAPVV 359
S +K+D G +I+H+LP L + K+ ++ P + + G DYP P+V
Sbjct: 414 SQSEKFDAEGLFIKHWLPQLSGLDKKAVHNP--------AQLGGLFGVPDYPPPIV 461
>gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
Length = 486
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 183/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 117 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 175
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 176 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 230
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 231 -LGGYAAERDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 286
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T+ P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 287 ELGWREFGWTLLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 346
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 347 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 465
Query: 356 APVVSHDSASKECKRKLG 373
P+V+HD+A + G
Sbjct: 466 LPIVAHDAARRRALDAFG 483
>gi|398860974|ref|ZP_10616615.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM79]
gi|398233993|gb|EJN19889.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM79]
Length = 493
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 187/373 (50%), Gaps = 32/373 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V GI+ +S + L P ++ + G + + F K+ + L AS P V+
Sbjct: 124 VAQILKAQGIDFYSYLDQLLLKPGTVLTRTGTYFQV-FSQFRKVCYERLHASLPRLVTAP 182
Query: 63 SL-PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
++ P+G S+ P G+ + + GE+EA ++L E+ +D + + +
Sbjct: 183 AIQAPLGIA-----SDEPPSRVEGFDTPSDSLRALWPAGETEARRRL-ETFTDTQ-IDYY 235
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQ 177
+ P+ KP T+ LS YL G +S R QCL Q+ + V+ + +
Sbjct: 236 HSERDFPA---KPGTSQLSAYLTAGVISPR---QCLHAALQSNQGEFESGKVGAVTWINE 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ + G P R + R + + W + E L AW++ RTG P IDA M QL
Sbjct: 290 LLWREFYKHILVGYPRVSRHRAFRPETEALAWRDAPEDLKAWQQGRTGLPIIDAAMRQLL 349
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFY 295
+ GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 350 ETGWMHNRLRMIVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSA 408
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDY 354
Y RI++P+S +K+D G +I+H+LP + +M K+ ++ + R + G DY
Sbjct: 409 PYFRIFNPLSQSEKFDAEGVFIKHWLPQINEMNKKDLHN--------RARLDGLFGVTDY 460
Query: 355 PAPVVSHDSASKE 367
P+P+V+ S S+E
Sbjct: 461 PSPIVNL-STSRE 472
>gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
Length = 477
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 177/387 (45%), Gaps = 38/387 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPL---TYQSFLKLAGQPLWASSPLP 58
+V D+ GI V + L DI++ +G + YQS+ K QP+
Sbjct: 113 QVTDFLEKKGIHVSTWQDTHLHGARDILKADGSHYQVFTPYYQSWRKQEKQPVIKV---- 168
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQ-EELSPFRG--------GESEALKKLR 109
D +F E L KG + EL +G G +A+ L
Sbjct: 169 ----------DKSFFSSEHTICDEPLSQKGNDKLREL--IKGCSRKFDQIGSDKAMNTLH 216
Query: 110 ESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS 169
+ I + + + + + PS + T+ LS +LK G +S R + +Y+
Sbjct: 217 QFIQKR--LTRYHEKRDIPSVF---GTSKLSRFLKTGTISIRTIFHA---IYEEALYEDE 268
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229
+ + +L WRDF++ + P + N + + W+ D+ L AW + TG+P +D
Sbjct: 269 GRETFIKELAWRDFYHMIYAHYPEMKEKEINSAFQGMKWNEDETLFEAWCKGETGFPLVD 328
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-L 288
A M QL + GWMH+ R A FLT+ D + W KG F + L+D D A N G + W
Sbjct: 329 AGMRQLNEEGWMHNRLRMVTASFLTK-DYLIDWRKGESYFAKKLVDYDEASNIGGFQWAA 387
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
S + Y RI++P + K++DP+G IR ++P L+ + +++I+EP P+ Q ++ C
Sbjct: 388 SVGTDAVPYFRIFNPTTQSKRFDPSGELIRKYVPELERVDEKWIHEPSKMPIDEQLKSGC 447
Query: 349 IIGRDYPAPVVSHDSASKECKRKLGEA 375
++G YP P V H K+ EA
Sbjct: 448 VLGDTYPLPAVDHQERRKKAISLFEEA 474
>gi|333926094|ref|YP_004499673.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333931047|ref|YP_004504625.1| deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|386327917|ref|YP_006024087.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
gi|333472654|gb|AEF44364.1| Deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|333490154|gb|AEF49316.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333960250|gb|AEG27023.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
Length = 476
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 171/364 (46%), Gaps = 28/364 (7%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
+G + +L P +Q GG+ Y F K Q L S V P + +
Sbjct: 122 SGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESD---VRSLPAPKLRE 178
Query: 70 VGYFEISEVPTVEELGYKGYGQEELS-PFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
G +S VP + Y Q E+ F GE AL++LR +E V ++ + + P
Sbjct: 179 GGVLPVSAVPAAFD-----YPQAEVGVDFPAGEDAALQRLRAFC--REQVQDYLQQRDFP 231
Query: 129 SAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV 187
+ T+ LSPYL G LS R F + + Q ++ S + +L+WR+F+ +
Sbjct: 232 AI---AGTSSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHL 288
Query: 188 AFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
P R + ++ W ++D LL AW++ TGYP +DA M QL + GWMH+ R
Sbjct: 289 MVAYPALCRHRPFIEWTDKVRWQDNDVLLLAWQQGATGYPIVDAAMRQLNETGWMHNRLR 348
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVS 305
A FL + D+ + W G F L+D D A NNG W W S + Y RI++P +
Sbjct: 349 MISASFLVK-DLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 407
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
G+++DP G +IR +LP L D+P +++P W Q R DYP P+V H
Sbjct: 408 QGERFDPQGTFIRKWLPELADVPDNALHQPHRWAEK---QQRTL-----DYPLPIVDHKQ 459
Query: 364 ASKE 367
A E
Sbjct: 460 ARLE 463
>gi|398889396|ref|ZP_10643239.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM55]
gi|398189518|gb|EJM76792.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM55]
Length = 485
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 175/356 (49%), Gaps = 29/356 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GI+V + LF P ++ + G + + F K+ + L S P L P
Sbjct: 121 GIKVHRYLDQLLFKPGSVLTRTGTCFQV-FSQFRKVCYERLHHSLP---GLVRAPRKQAP 176
Query: 71 GYFEISEVPT-VEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
VPT +E +L P GE+EA ++L S +D + + +++ + P+
Sbjct: 177 LNIASDAVPTSIEGFATPADNLRQLWP--AGETEARRRL-NSFTDAQ-IDHYQNERDFPA 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN----VKKHTSPPVSLVGQLLWRDFFY 185
KP T+ LS YL G +S R QCL N + + V+ + +LLWR+F+
Sbjct: 233 ---KPGTSQLSAYLAAGVISPR---QCLHAALNNNQGEFESGKTGAVTWINELLWREFYK 286
Query: 186 TVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ G P R + R + + W N E LAAW++ RTG P IDA M QL GWMH+
Sbjct: 287 HILVGYPRVSRHRAFRPETEALAWRNAPEELAAWQQGRTGLPIIDAAMRQLLATGWMHNR 346
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSP 303
R VA FLT+ ++ + W +G F + LID D A NNG W W S + + Y RI++P
Sbjct: 347 LRMVVAMFLTK-NLLIDWREGERFFMQHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNP 405
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+S +K+DP G +I+H+LP L + K+ ++ P + DYP+P+V
Sbjct: 406 LSQSEKFDPEGLFIKHWLPELAGLSKKDVHNP-------ASFGGLFGVVDYPSPIV 454
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 182/366 (49%), Gaps = 25/366 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K S G++V S TL++P ++ K P L + +F K + LP S
Sbjct: 119 LKKALSQIGVKVNSFWGATLYHPDNLPFKIHQIPEL-FTNFRKQLEKKSTIDPTLP-SPQ 176
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKG--YGQEELSPFRGGESEALKKLRESISDKEWVAN 120
LPP+ V E E+P + ELG + + + + F+GGE++ L +L +K+ +
Sbjct: 177 KLPPLPKV---EPGEIPQLLELGIEELIFDERAVLKFQGGETKGLVRLHNYFWEKDCLRT 233
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+++ + ++ SP+L GCLS R Y+ + Y++ + LV +L+W
Sbjct: 234 YKETRNGMLGL--DYSSKFSPWLALGCLSPRLIYEQVQK-YESERIKNDSTYWLVFELMW 290
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQ-------IPWSNDDELLAAWREARTGYPWIDAIMV 233
RDFF + GNRI ++ IPW D + W+E +TGYP +DA M
Sbjct: 291 RDFFRFIC-------AKHGNRIFRKSGLQGLDIPWKEDWKRFQLWQEGKTGYPLVDANMR 343
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
+L G+M + R VA FLT+ ++ ++W+ G + F+ LLID D N GNW + +
Sbjct: 344 ELAATGFMSNRGRQNVASFLTK-NLGINWQMGAEWFESLLIDYDVCSNYGNWNYTAGVGN 402
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
+ R ++ + K YD G+Y+RH+L L +P + I+EPW Q + IG D
Sbjct: 403 DARGFRYFNVLKQSKDYDSKGDYLRHWLLELASLPGDKIHEPWKLSQEEQKHFRVRIGVD 462
Query: 354 YPAPVV 359
YP P+V
Sbjct: 463 YPRPIV 468
>gi|421506155|ref|ZP_15953086.1| deoxyribodipyrimidine photolyase [Pseudomonas mendocina DLHK]
gi|400343105|gb|EJO91484.1| deoxyribodipyrimidine photolyase [Pseudomonas mendocina DLHK]
Length = 477
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 185/390 (47%), Gaps = 38/390 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP----LP 58
V Y + I S + LF P I+ ++GG + Y F K+ + L + P P
Sbjct: 114 VAAYLAQQDIAWHSHLDQLLFKPGSILTRSGGYFQV-YSQFRKVCYEHLHMALPGLVARP 172
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
V+ + P D +P + G+ ++ S + GE A ++L E +D++ +
Sbjct: 173 VAQAPTPLASDA-------IPHAVD-GFAMPSEQLRSLWPAGEEAARQRL-ERFADEQ-I 222
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVSL 174
++ + P+ P T+ LSPYL G LS R QCL + + V+
Sbjct: 223 GYYKDERDFPAL---PGTSQLSPYLAAGVLSPR---QCLHAALAANRGEFDSGNAGVVTW 276
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
V +LLWR+F+ + G P R + R + + W E LAAW++ RTG P IDA M
Sbjct: 277 VNELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRRAPEELAAWQQGRTGLPIIDAAMR 336
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSS 292
QL + GWMH+ R VA FLT+ ++ + W +G F LID D A NNG W W S +
Sbjct: 337 QLLETGWMHNRLRMIVAMFLTK-NLLIDWREGERFFMCHLIDGDLAANNGGWQWSASTGT 395
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
Y RI++P+S +K+DP G +IRH+LP L + K I++P +
Sbjct: 396 DAAPYFRIFNPISQSQKFDPEGRFIRHWLPELAGLNKRDIHDP-------ASLGGLFAPA 448
Query: 353 DYPAPVVSHDSASKECKRKLGEAYALNQKL 382
YP P+V S+ +R L L Q++
Sbjct: 449 GYPRPIV---DLSRSRERALAAFRNLGQEV 475
>gi|386052851|ref|YP_005970409.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
gi|346645502|gb|AEO38127.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
Length = 467
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 138/269 (51%), Gaps = 12/269 (4%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GE A +L I K +A+++K + P T+ LS YL+ G +S R +Q L
Sbjct: 193 SGEKTANTRLANFI--KHDIADYDKARDFPEL---DKTSHLSRYLRTGEISIRTIWQALQ 247
Query: 159 DVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAW 218
+ + T + +L WRDF+ + PN + I W N+ E AW
Sbjct: 248 ET-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAW 302
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
++ +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D
Sbjct: 303 QDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-DLLIDWRFGEKYFQQMLIDYDS 361
Query: 279 AINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
A N G W W S + Y RI++P + +K+DP G +IR ++ L ++P +YI++P
Sbjct: 362 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKYIHQPEK 421
Query: 338 APLTIQTRAKCIIGRDYPAPVVSHDSASK 366
T Q ++G+DYP P++ H K
Sbjct: 422 MSETEQKEYGLLLGKDYPFPLIDHKERRK 450
>gi|422620510|ref|ZP_16689188.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica
str. M301072]
gi|330900868|gb|EGH32287.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica
str. M301072]
Length = 482
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 180/377 (47%), Gaps = 34/377 (9%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
AG+ S + LF P I+ K G + + F K+ L + P V P
Sbjct: 120 AGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHTVRTPKAQPAQS 178
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
+ I + + +L P GE+EA +++ ++ +D++ ++ ++ + P+
Sbjct: 179 IKSDAIPD--QAKGFATPSIALRDLWP--AGEAEARRRM-DAFADEQ-ISYYKTERDFPA 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVA 188
KP T+ LS YL G +S R + L + V+ + +LLWR+F+
Sbjct: 233 ---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTL 289
Query: 189 FGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARH 247
G P R + R + + W + E L AW+EARTG P IDA M QL + GWMH+ R
Sbjct: 290 VGYPRVSRHRAFRPETEALNWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRM 349
Query: 248 CVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSF 306
VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P+S
Sbjct: 350 VVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RDYPAPVVSH 361
+++DP G +I+ +LP L DM K+ I++P +IG DYP P+V
Sbjct: 409 SERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAADYPKPIV-- 454
Query: 362 DSASKECKRKLGEAYAL 378
SK R L AL
Sbjct: 455 -DLSKSRARALAAFKAL 470
>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
Length = 464
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 182/365 (49%), Gaps = 26/365 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW--ASSPLPVS 60
V+D S AGIE + L P I N G Y F K W + P
Sbjct: 104 VRDALSDAGIERRAFHDALLHTPGSIT-TNQGDYYSVYTYFWKK-----WRDGAKDAPFD 157
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
V D E E+PT+ +LG++ + E+ P +EA + L + + + V
Sbjct: 158 APDEIVVPDEVVEEGIEIPTLADLGFED-PEAEIPP---AGTEAARDLLSAFCEDD-VYR 212
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL---VGQ 177
++K + P+ + +T+ LSP+LKFG + R ++ T+ ++ + S+ GQ
Sbjct: 213 YDKARDYPA---RESTSRLSPHLKFGTVGIREVWEA-TERAKDAAESEDAAESVEEFQGQ 268
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
L WR+F+ V TP+ I W +D + + AW++ TGYP +DA M QLR+
Sbjct: 269 LAWREFYAHVLDDTPSVVVENYKDYQYDIAWRDDPDGVRAWKDGETGYPIVDAGMRQLRE 328
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ- 296
W+H+ R +A FLT+ D+ V W +G D + R L+D D A +NG W W + + Q
Sbjct: 329 EAWVHNRVRMIIASFLTK-DLLVDWREGYDWYRRKLVDHDTANDNGGWQWAASTGTDAQP 387
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y R+++P + G+++DP+ YI+ F+P L D+P + ++E WT + + + DYP
Sbjct: 388 YFRVFNPTTQGERFDPDAEYIKRFVPELADVPPKTVHE-WT---ELDPDERRELAPDYPD 443
Query: 357 PVVSH 361
P+V H
Sbjct: 444 PIVDH 448
>gi|440720032|ref|ZP_20900453.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP34876]
gi|440726158|ref|ZP_20906414.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP34881]
gi|440366754|gb|ELQ03831.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP34876]
gi|440366891|gb|ELQ03961.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae BRIP34881]
Length = 482
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 179/377 (47%), Gaps = 34/377 (9%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD 69
AG+ S + LF P I+ K G + + F K+ L + P V P
Sbjct: 120 AGVHFNSYLDQLLFKPGSILTKTGNYFQV-FTQFKKVCYTRLHEAMPHTVRTPKAQPAQS 178
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
+ I + +L P GE+EA +++ ++ +D++ ++ ++ + P+
Sbjct: 179 IKSDAIPD--QANGFATPSIALRDLWP--AGEAEARRRM-DAFADEQ-ISYYKTERDFPA 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVA 188
KP T+ LS YL G +S R + L + V+ + +LLWR+F+
Sbjct: 233 ---KPGTSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTL 289
Query: 189 FGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARH 247
G P R + R + + W + E L AW+EARTG P IDA M QL + GWMH+ R
Sbjct: 290 VGYPRVSRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRM 349
Query: 248 CVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSF 306
VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P+S
Sbjct: 350 VVAMFLTK-NLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQ 408
Query: 307 GKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-----RDYPAPVVSH 361
+++DP G +I+ +LP L DM K+ I++P +IG DYP P+V
Sbjct: 409 SERFDPEGVFIKRWLPELADMNKKQIHDP------------SLIGDLFGAADYPKPIV-- 454
Query: 362 DSASKECKRKLGEAYAL 378
SK R L AL
Sbjct: 455 -DLSKSRARALAAFKAL 470
>gi|429335278|ref|ZP_19215915.1| deoxyribodipyrimidine photolyase [Pseudomonas putida CSV86]
gi|428760080|gb|EKX82357.1| deoxyribodipyrimidine photolyase [Pseudomonas putida CSV86]
Length = 428
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 168/363 (46%), Gaps = 26/363 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V + I + S + LF P ++ +N G + + F K Q L + P L
Sbjct: 65 QVGELLQRHDIRLHSHLDQLLFKPGTVLTRNDGYFKV-FTQFRKACYQRLHHALP---PL 120
Query: 62 SSLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
LP D +P +E +L P GE A K+L + D +A+
Sbjct: 121 QRLPRKQDRPAATNDAIPEAIEGFALPCDTLRDLWP--AGERHARKRLEDFAQDA--MAD 176
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLL 179
+ + + PS T+ LSPYL G +S R + L + + V+ + +LL
Sbjct: 177 YPEQRDIPSV---DGTSQLSPYLAAGVVSVRQCLHAALAHNHGEFESGNPGAVTWINELL 233
Query: 180 WRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F+ V G P R + R + + W + E L AW+E RTG P +DA M QL
Sbjct: 234 WREFYKHVLTGYPRVSRHRAFRPATEAVQWRDAPEDLKAWQEGRTGVPIVDAAMRQLLAT 293
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQY 297
GWMH+ R VA FL++ ++ + W KG F R LID D A NNG W W S + Y
Sbjct: 294 GWMHNRLRMVVAMFLSK-NLLIDWRKGEAFFMRHLIDGDLAANNGGWQWSASTGTDSVPY 352
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
R+++PVS +++D G ++RH+LP LKD+ + I+ P R YP P
Sbjct: 353 FRVFNPVSQSERFDKKGRFLRHWLPELKDLDDKEIHSP----------GGLFSVRGYPQP 402
Query: 358 VVS 360
+V
Sbjct: 403 IVD 405
>gi|434399467|ref|YP_007133471.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
gi|428270564|gb|AFZ36505.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
Length = 488
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 182/375 (48%), Gaps = 29/375 (7%)
Query: 12 IEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--SLSSLPPVGD 69
I+V S TL+ D+ + P L Y +F K +PLP L SLP +
Sbjct: 128 IQVNSFWGATLYLTEDLPFEISQIPEL-YTNFRKQVEAKSTIENPLPTPKELPSLPSI-- 184
Query: 70 VGYFEISEVPTVEELGYKG--YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
E+ ++P + +LG + + + F+GGE+EAL +L + + + +++ +
Sbjct: 185 ----ELGQIPQISDLGLTTPIFDKRAVLNFKGGETEALTRLNQYFWQLDCLKEYKETRNG 240
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTV 187
++ SP+L GC+S RY Y+ + Y+ + L+ +L+WRDFF+ +
Sbjct: 241 MLG--ANYSSKFSPWLARGCISPRYIYEQVQK-YETKRIKNDSTYWLIFELIWRDFFHFI 297
Query: 188 AFGTPNFDRMKGNRICKQ-------IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
GN+I Q IPW D + W+E +TGYP +DA M +L G+
Sbjct: 298 C-------AKHGNKIFYQSGLQGIDIPWKEDWKRFNLWQEGKTGYPLVDANMRELAATGF 350
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
M + R VA FLT+ ++ ++W+ G + F+ LL+D D N GNW + + + R
Sbjct: 351 MSNRGRQNVASFLTK-NLGINWQIGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRY 409
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++ K YDP G+Y+RH+LP L +P I+EPW Q R + +G DYP PVV
Sbjct: 410 FNIPKQSKYYDPKGDYLRHWLPELALIPGSKIHEPWKLTSEEQKRYQIRLGTDYPYPVVD 469
Query: 361 HDSASKECKRKLGEA 375
+ K ++ A
Sbjct: 470 FFKSVKANEKIYNNA 484
>gi|398842541|ref|ZP_10599720.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM102]
gi|398105638|gb|EJL95725.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM102]
Length = 482
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 185/366 (50%), Gaps = 31/366 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSL-PPVGD 69
GI+ + + LF P ++ + G + + F K+ + L AS P V+ ++ P+G
Sbjct: 121 GIDFYRYLDQLLFKPGTVLTRTGTYFQV-FSQFRKVCYERLHASLPRLVTAPAIQAPLGI 179
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
S+ P G+ + + GESEA ++L E+ +D + + + + P+
Sbjct: 180 A-----SDEPPSRVEGFDTPSDSLRALWPAGESEARRRL-ETFTDTQ-IDYYHSERDFPA 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFY 185
KP T+ LS YL G +S R QCL Q+ + V+ + +LLWR+F+
Sbjct: 233 ---KPGTSQLSAYLTAGVISPR---QCLHAALQSNQGEFESGKVGAVTWINELLWREFYK 286
Query: 186 TVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ G P R + R + + W + + L AW++ RTG P IDA M QL + GWMH+
Sbjct: 287 HILVGYPRVSRHRAFRPETEALAWRDAPQDLKAWQQGRTGLPIIDAAMRQLLETGWMHNR 346
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSP 303
R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI++P
Sbjct: 347 LRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNP 405
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDYPAPVVSHD 362
+S +K+D G +I+H+LP + M K+ ++ + R + + G DYP+P+V+
Sbjct: 406 LSQSEKFDAEGVFIKHWLPQINGMNKKDLHN--------RARLEGLFGVTDYPSPIVNLS 457
Query: 363 SASKEC 368
++ +
Sbjct: 458 TSRERA 463
>gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase PhrB [Shewanella oneidensis MR-1]
gi|24349596|gb|AAN56382.1| deoxyribodipyrimidine photolyase PhrB [Shewanella oneidensis MR-1]
Length = 512
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 180/390 (46%), Gaps = 40/390 (10%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL-----------KLAGQPLWASSPLP 58
AGI + H L P ++ +G Y+ F K A PL +PL
Sbjct: 132 AGIPLSLSDEHCLLPPGTVLNLSGD----MYRVFTPFSRKWREVAAKQAILPLGVPAPLG 187
Query: 59 VSLSSLPPV--GDVGYFEISEVPTVEELGYKGYGQEELSPF------RGGESEALKKLRE 110
LS P+ ++G ++ + KG+ Q +P GE +A + L +
Sbjct: 188 SILSEPKPLFFKNIGSTYLAASKDIAS-SKKGFNQTAPNPLISSEQWAAGEGQAKRLLNQ 246
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN----VKK 166
I K V ++++ + P+ T+V+SPYL G LS R QC+ + Q +
Sbjct: 247 FIQQK--VQDYKQDRDFPAI---DGTSVISPYLAIGVLSPR---QCVAALLQRFPEVIVD 298
Query: 167 HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGY 225
TSP + + +L+WR+F+ + P+ + NR + W N+ AW E +TGY
Sbjct: 299 DTSPGRTWLNELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTGY 358
Query: 226 PWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNW 285
P +DA M QL + GWMH+ R VA FLT+ + + W G F + LID D A NNG W
Sbjct: 359 PIVDAAMRQLNQTGWMHNRLRMVVASFLTK-HLLIDWRWGERYFRQHLIDGDLAANNGGW 417
Query: 286 LWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W + C Y RI++P+S +K+DP+G +IR +LP L +++P +
Sbjct: 418 QWSAGCGCDAQPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLF 477
Query: 345 RAKCIIGR-DYPAPVVSHDSASKECKRKLG 373
A + DYP +V H++A LG
Sbjct: 478 EAPLFASQADYPNAIVEHNAARARALTVLG 507
>gi|425901487|ref|ZP_18878078.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883811|gb|EJL00298.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 481
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 178/363 (49%), Gaps = 27/363 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + G+ S + LF P ++ ++GG + + F K+ L S LP L+
Sbjct: 113 VASLLKSQGVGFHSYLDQLLFRPGSVLTRSGGYFQV-FSQFRKVCYNRL--HSALPPQLA 169
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
+ P + +P E G+ G + + GE+ A ++L + + +++
Sbjct: 170 A-PRAQAALRIKADALPQQVE-GFPTPGPHLQTLWPAGETAAQQRLARFAEAQ--LDHYQ 225
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK---KHTSP-PVSLVGQL 178
+ P+ +P T+ LSPYL G LS R QCL QN + SP V+ + +L
Sbjct: 226 AERDLPA---RPGTSQLSPYLAAGVLSPR---QCLHAALQNNRGEFASGSPGAVTWINEL 279
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LWR+F+ + G P R + R + + W + E LAAW++ARTG P IDA M QL +
Sbjct: 280 LWREFYKHILVGYPRVSRHRAFRPETEAVAWRDAPEELAAWQQARTGLPIIDAAMRQLLE 339
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQ 296
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 340 TGWMHNRLRMIVAMFLTK-NLLIDWRQGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAP 398
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
Y RI++P+S +++D G +I+H+LP L + + I+ P DYP
Sbjct: 399 YFRIFNPLSQSQRFDSQGAFIKHWLPELAGLNAKDIHNP-------AAMGGLFGVADYPP 451
Query: 357 PVV 359
P+V
Sbjct: 452 PMV 454
>gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
Length = 468
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 135/265 (50%), Gaps = 19/265 (7%)
Query: 98 RGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCL 157
R E +AL L++ I + + + + P+ T+ LSP+LK G LS R + +
Sbjct: 207 RTSEQDALHVLQQFIDTS--LPYYHRQRDIPAV---SGTSRLSPHLKTGTLSIRTVFHAV 261
Query: 158 TDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAA 217
+ N + + + +L WRDF++ + P + +PWS DDE A
Sbjct: 262 AQQFGN--GYDEAVETYIKELAWRDFYHMIYAHFPFTKTEAFIEKYRHLPWSRDDERFEA 319
Query: 218 WREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSD 277
W+E +TG+P +DA M QL++ GWMH+ R A FLT+ D + W G F +LID D
Sbjct: 320 WKEGKTGFPLVDAGMRQLKEEGWMHNRLRMIAASFLTK-DYLIDWRMGEQYFQHMLIDYD 378
Query: 278 WAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW 336
A N G W W S + Y R+++P+ KK+DP+G YIR ++ L P YI+EPW
Sbjct: 379 EASNIGGWQWAASVGTDAVPYFRVFNPIEQSKKFDPDGTYIRTYVQELASFPSLYIHEPW 438
Query: 337 TAPLTIQTRAKCIIGRDYPAPVVSH 361
+ IQT DYPAP V H
Sbjct: 439 KS--NIQT--------DYPAPTVDH 453
>gi|344211748|ref|YP_004796068.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
gi|343783103|gb|AEM57080.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
Length = 465
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 148/299 (49%), Gaps = 15/299 (5%)
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKP 124
PP ++ + +PT+ +LG+ + E G EA L + ++ E V +E+
Sbjct: 162 PPADELADVDGDALPTLADLGFD---EPEADVPAAGTDEARALLDDFLA--ENVYEYEER 216
Query: 125 KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQLLWRDF 183
+ P+ T+ LS +LKFG + R Y D + V QL WR+F
Sbjct: 217 RDFPA---DECTSRLSAHLKFGTIGIREVYDRTEDAKEGTGGDRRESVREFQSQLAWREF 273
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+ V F P+ I W ND+ELL AW++ TGYP +DA M QLR+ +MH+
Sbjct: 274 YTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGETGYPIVDAGMRQLREEAYMHN 333
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYS 302
R VA FLT+ D+ + W G + F L+D D A +NG W W + + Q Y RI++
Sbjct: 334 RVRMIVASFLTK-DLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFN 392
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
P++ G+ YDP+ YI+ ++P L+D E I++ W Q R +YP PVV H
Sbjct: 393 PMTQGEDYDPDAEYIKEYVPELRDAAPEIIHD-WNDCSLTQRRNAAP---EYPDPVVKH 447
>gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|386007316|ref|YP_005925594.1| phr [Listeria monocytogenes L99]
gi|386025906|ref|YP_005946682.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99]
gi|336022487|gb|AEH91624.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
Length = 467
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 139/275 (50%), Gaps = 12/275 (4%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+L GE A +L I K +A+++K + P T+ LS YL+ G +S R
Sbjct: 187 DLPILDSGERAANTRLANFI--KHDIADYDKARDFPEL---DKTSHLSRYLRTGEISIRT 241
Query: 153 FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
+Q L + K T + +L WRDF+ + PN + I W N+
Sbjct: 242 VWQALQET-----KATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNR 296
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
E AW+E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++
Sbjct: 297 EFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQM 355
Query: 273 LIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
LID D A N G W W S + Y RI++P + +K+DP +IR ++ L ++P +Y
Sbjct: 356 LIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIRKYVKELANLPDKY 415
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
I++P T Q ++G+DYP P++ H K
Sbjct: 416 IHQPEKMSETEQKEYGLVLGKDYPFPLIDHKERRK 450
>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein
[Herbaspirillum seropedicae SmR1]
Length = 494
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 154/322 (47%), Gaps = 24/322 (7%)
Query: 56 PLPVS--LSSLP-PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG--GESEALKKLRE 110
P PV L++L P G G+ +P+ +LG+ +EL G G L + +
Sbjct: 177 PYPVEKYLTALASPPGKAGH----ALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDEFLD 232
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP 170
I +F KG PS LS +L+FG +S R + +
Sbjct: 233 RIGSYGAARDFPAVKG-PS--------YLSVHLRFGTISIRTLARAAMQAMHAGQGAAGA 283
Query: 171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND---DELLAAWREARTGYPW 227
V L +L WRDF++ + P R I W + L AAW E RTGYP
Sbjct: 284 AVWL-SELTWRDFYFMILHHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPL 342
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
+DA M Q+ + G+MH+ R VA FLT+ D+ + W G F R L D D A NNG W W
Sbjct: 343 VDAAMAQINQSGYMHNRLRMVVASFLTK-DLGIDWRWGERYFARHLNDFDLAANNGGWQW 401
Query: 288 LSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
S S Q Y RI++PV+ +K+DP+G +IR +LP L + + I+ PWTA + A
Sbjct: 402 ASSSGCDAQPYFRIFNPVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDA 461
Query: 347 KCIIGRDYPAPVVSHDSASKEC 368
++G++YP P+V H A +
Sbjct: 462 GVVLGQNYPRPIVDHAQARERT 483
>gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
gi|72117822|gb|AAZ60085.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
Length = 525
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 152/296 (51%), Gaps = 13/296 (4%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
+P++E+LG+ E++ G S + L E + + + ++ + + P+ +
Sbjct: 223 LPSLEDLGFAPSNLAEVAMPTG--SSGGQALFEEFTSR--MGDYGRRRDYPALR---GPS 275
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
LS +L+FG +S R + ++ + + +L+WRDF++ + P
Sbjct: 276 YLSVHLRFGTVSIRTLARAAHGAVLRGGADSAGAATWLSELVWRDFYFMILHHHPRVAAG 335
Query: 198 KGNRICKQIPWSND----DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253
+ I D D +WR+A TGYP +DA M+Q+R+ G+MH+ R A FL
Sbjct: 336 EAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQSGYMHNRLRMVTASFL 395
Query: 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDP 312
+ D+ V W +G F L D D+A NNG W W + + Q + RI++PV+ +K+DP
Sbjct: 396 VK-DLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDP 454
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
G +IR +LP L +P +Y++ PWTAP + A +G +YP P+V HD A KE
Sbjct: 455 QGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYPRPLVQHDVARKET 510
>gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
Length = 560
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 11/234 (4%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD- 195
+ LS +L+FG +S R + + + + + +L+WRDF++ + P+
Sbjct: 304 SYLSTHLRFGTVSIRTLAAHAHAAMLHGSRGAA---TWLSELIWRDFYFMILHHRPDLAG 360
Query: 196 ----RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
R + +RI + + D AAWR+ARTGYP +DA M+Q+R+ G+MH+ R A
Sbjct: 361 GASFRPEFDRI-RWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVAAS 419
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKY 310
FL + D+ V W +G F L D D+A NNG W W + S Q + RI++PV+ +K+
Sbjct: 420 FLIK-DLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKF 478
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
DP G++IR +LP L +P Y++ PWTAP + A +G YP P+V H +A
Sbjct: 479 DPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAA 532
>gi|398985069|ref|ZP_10690896.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM24]
gi|399013272|ref|ZP_10715582.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM16]
gi|398114211|gb|EJM04043.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM16]
gi|398154672|gb|EJM43138.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM24]
Length = 488
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 183/373 (49%), Gaps = 29/373 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + GI S + LF P ++ K + + F K+ + L S P +L
Sbjct: 120 VGETLKAEGITFHSYLDQLLFKPGSVLTKTESYFKV-FSQFRKVCYERLHRSMP---ALV 175
Query: 63 SLPPVGDVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P G E+S P + + G+ Q + GE+EA ++L ++ +D + + +
Sbjct: 176 KAP--GKQEKLELSSDPIPDSVKGFSTPSQTLRDLWPAGENEARRRL-DTFTDAQ-IDYY 231
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQ 177
+ + P+ KP T+ LS YL G +S R QCL Q+ + V+ + +
Sbjct: 232 QSERDFPA---KPGTSQLSAYLAAGVISPR---QCLHAALQSNQGEFESGKVGAVTWINE 285
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ + G P R + R + + W + + LAAW+EARTG P IDA M QL
Sbjct: 286 LLWREFYKHILVGYPRVSRHRAFRPETEALAWRDAPDDLAAWQEARTGLPIIDAAMRQLL 345
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFY 295
+ GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 346 ETGWMHNRLRMIVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSA 404
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++P+S +K+D G +I+H+LP L + K+ ++ P DYP
Sbjct: 405 PYFRIFNPLSQSEKFDSEGLFIKHWLPELAGLNKKEVHNP-------ANLGGLFGAADYP 457
Query: 356 APVVSHDSASKEC 368
+P+V+ ++ +
Sbjct: 458 SPIVNLSTSRQRA 470
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 182/360 (50%), Gaps = 11/360 (3%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
++K + I+V S TL++P ++ + P L + +F K + + LP
Sbjct: 118 RLKKALAKCNIKVESFWGTTLYHPDNLPFEIYQLPEL-FTNFRKQVERKSTVAPVLPAP- 175
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKG--YGQEELSPFRGGESEALKKLRESISDKEWVA 119
SLPP+ D+ +I +P++ ELG + + + F+GGE ++L++ I K +
Sbjct: 176 KSLPPLPDL---DIGNLPSLSELGLEPAVFEPRGVLKFQGGEIAGRERLQDYIWQKNCLK 232
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL 179
N+++ + + ++ SP+L GCLS RY Y+ + Y++ + L+ +LL
Sbjct: 233 NYKETRNEMLG--ADYSSKFSPWLAHGCLSPRYIYEEVQK-YEHQRVKNDSTYWLIFELL 289
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WRDFF + N +PW D + W+E +TGYP +DA M +L G
Sbjct: 290 WRDFFRFICAKHGNKIFFSQGLQGIDLPWKEDWQRFKLWQEGKTGYPLVDANMRELATTG 349
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
+M + R VA FLT+ ++ ++W G + F+ LLID D N GNW + + + R
Sbjct: 350 FMSNRGRQNVASFLTK-NLGINWLMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARGFR 408
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
++ K YDP G+Y+R++LP L +P + I+EPW Q R + +G DYP PVV
Sbjct: 409 YFNIPKQSKDYDPKGDYLRYWLPELALVPGDKIHEPWKLSQEEQKRYRVRLGVDYPHPVV 468
>gi|403673771|ref|ZP_10936055.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. NCTC 10304]
Length = 480
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 188/370 (50%), Gaps = 35/370 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNQHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L + +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFFSSISKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P AT+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKLERDFPHI---QATSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKNTQKIKWNHNPEHLTAWQTGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVV 359
+G +YP P+V
Sbjct: 455 LGLNYPKPIV 464
>gi|343497166|ref|ZP_08735244.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342819829|gb|EGU54664.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 479
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 23/292 (7%)
Query: 81 VEELGYK---GYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
VEE +K Y E+ + + ++KLR+ +E + ++ + P+ T+
Sbjct: 188 VEEFNHKCHFTYPTEDSAAYAVDTESIIQKLRDFC--RESASQYKDDRDLPAI---EGTS 242
Query: 138 VLSPYLKFGCLSSRYFYQCLT----DVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN 193
LSPYL GCLS R LT D +N + + + +L+WR+F+ + P
Sbjct: 243 RLSPYLALGCLSPRQCIARLTYQENDRLKNFDELNEGEQTWLSELIWREFYQHLLEFEPK 302
Query: 194 FDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ + + W ND++ L W+ TGYP +DA M QL + GWMH+ R VA F
Sbjct: 303 LSKGLPFVDWSIDLEWHNDEDWLTRWKNGETGYPIVDAAMRQLNQTGWMHNRLRMVVASF 362
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
LT+ D+ + W KG D F LID D+A NNG W W + + Q Y RI++P+S G+K+D
Sbjct: 363 LTK-DLLIDWRKGEDYFMSKLIDGDYAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 421
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
G +I ++P LK++P+++I++PW T+ + DYP P+V H +
Sbjct: 422 AQGEFICKWIPELKEVPQKFIHQPWN-----WTKRHTL---DYPKPMVDHKT 465
>gi|421900163|ref|ZP_16330526.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum MolK2]
gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum MolK2]
Length = 522
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 11/234 (4%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD- 195
+ LS +L+FG +S R + + + + + +L+WRDF++ + P+
Sbjct: 266 SYLSTHLRFGTVSIRTLAAHAHAAMLHGSRGAA---TWLSELIWRDFYFMILHHRPDLAD 322
Query: 196 ----RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
R + +RI + + D AAWR+ARTGYP +DA M+Q+R+ G+MH+ R A
Sbjct: 323 GASFRPEFDRI-RWVEGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVAAS 381
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKY 310
FL + D+ V W +G F L D D+A NNG W W + S Q + RI++PV+ +K+
Sbjct: 382 FLIK-DLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKF 440
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
DP G++IR +LP L +P Y++ PWTAP + A +G YP P+V H +A
Sbjct: 441 DPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPQPIVEHAAA 494
>gi|417822869|ref|ZP_12469467.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|419836871|ref|ZP_14360311.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|421343000|ref|ZP_15793404.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|421355393|ref|ZP_15805724.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|423734313|ref|ZP_17707526.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|424008597|ref|ZP_17751545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
gi|340048999|gb|EGR09915.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|395941567|gb|EJH52244.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|395950063|gb|EJH60682.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|408631158|gb|EKL03717.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|408857421|gb|EKL97109.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|408865383|gb|EKM04786.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
Length = 469
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P ++ T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFP---VREGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 174/377 (46%), Gaps = 28/377 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL-----KLAGQPLWASSP 56
+V + I V + L P +I K+ +P Y + + +P+ S
Sbjct: 112 QVSEALKEVNIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSE 171
Query: 57 LPVSLSS--LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
P L+ L + G I ++P E+LG+ + L P GE A +L E D
Sbjct: 172 NPTGLTEKQLKIAKENG---IIDLPLAEDLGFVWENELILEP---GEEAAQNRL-EEFCD 224
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ + +++ + P+ T+ LS LKFG +S R + + +N + +
Sbjct: 225 RA-LFEYDEQRNFPA---NDGTSQLSAALKFGVISIRTVWAKTVEAMENTRSDEARNNIK 280
Query: 175 VGQ--LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
Q L WR+F+ + P K PWS + E AW E +TGYP +DA M
Sbjct: 281 AWQQELAWREFYQQAMYHFPELANGPYRDHFKDFPWSENQEHFQAWCEGKTGYPIVDAAM 340
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
QL + GWMH+ R VA FLT+ D+ ++W+ G F + L+D D + NNG W W + S
Sbjct: 341 RQLNEIGWMHNRCRMIVANFLTK-DLMINWQWGEKYFMQKLMDGDLSANNGGWQWSASSG 399
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
+ RI++P + +KYDP G YIR +LP L + EY+ T ++ + R C
Sbjct: 400 MDPKPLRIFNPTTQAQKYDPEGEYIRQWLPELSSLDTEYLV---TGKISSKDREAC---- 452
Query: 353 DYPAPVVSHDSASKECK 369
DYP P+V H ++ K
Sbjct: 453 DYPEPIVDHKQQQQQFK 469
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 172/382 (45%), Gaps = 38/382 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V+D GI V S L P +I + N G P Y F K W
Sbjct: 113 VQDALEEKGIAVESFWDQLLHAPGEI-RTNSGNPYKVYTPFWKN-----WKDQAKAAPAE 166
Query: 63 SLPP-----------VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
SL V VG + E+PT +ELG+ L P GE A ++L E
Sbjct: 167 SLKNGEGLTETEQDVVKKVG---VMELPTAKELGFTWDNSLMLEP---GEKAAKQRL-EE 219
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCL-TDVYQNVKKHTSP 170
D+ + +++ + P+ T+ LS LKFG + R +Q T + ++ T
Sbjct: 220 FCDRA-IDDYQHQRNLPAI---DGTSRLSAALKFGAIGIRTVWQATQTAIERSRSDETRD 275
Query: 171 PVSLVGQ-LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229
+ Q L WR+F+ + P + PW N+ L AW E RTGYP +D
Sbjct: 276 GIQTWQQELAWREFYQHALYFFPELASGPYRDTFENFPWDNNQTLFQAWCEGRTGYPIVD 335
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
A M QL + GWMH+ R VA FLT+ D+ ++W+ G F + L D D A NNG W W +
Sbjct: 336 AAMRQLNQTGWMHNRCRMIVASFLTK-DLIINWQWGETYFMQKLYDGDLAANNGGWQWSA 394
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
S + RI++P S +KYDP+G YIR +LP L + + + T ++ + C
Sbjct: 395 SSGMDPKPLRIFNPASQAQKYDPDGEYIRQWLPELSSLDTKDLV---TGKISSDECSSC- 450
Query: 350 IGRDYPAPVVSHDSASKECKRK 371
YP P+V H KE K++
Sbjct: 451 ---GYPEPIVDHKKRQKEFKQR 469
>gi|365087758|ref|ZP_09327644.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
gi|363417381|gb|EHL24461.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
Length = 496
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 146/294 (49%), Gaps = 21/294 (7%)
Query: 78 VPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
VPT+++LG++ +L G G + + E NF KG
Sbjct: 201 VPTLQDLGFEPTALSQLRLPTGARGAQQLFDDFLGRVERYEDTRNFPAVKG--------- 251
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
+ LS +L+FG +S R + ++ +++ + + +L+WRDF++ + P+
Sbjct: 252 PSYLSVHLRFGTISPRLLART---AHRLMQEGNPGATTWLSELIWRDFYFQILHHHPHVV 308
Query: 196 RMKGNRICKQIPWSND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
I W D L AAW E RTGYP +DA M Q+ + G+MH+ R VA F
Sbjct: 309 GQSFKPAYDAIAWETGPEADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASF 368
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + D+ + W +G F L D D A NNG W W S S Q Y RI++PVS +K+D
Sbjct: 369 LVK-DLGIDWRRGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFD 427
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTA-PLTIQTRAKCIIGRDYPAPVVSHDSA 364
P G +IR +LP L + + ++ PW A PL +Q A +G YP PVV HD+A
Sbjct: 428 PEGKFIRRYLPQLAGLSAKALHAPWLARPLELQ-EAGVRLGDTYPLPVVEHDAA 480
>gi|421789719|ref|ZP_16225967.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
gi|410397859|gb|EKP50098.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
Length = 480
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 192/385 (49%), Gaps = 35/385 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF-----LKLAGQPLWASSPL 57
V+DY + G E+F T+F P I+ +P + +F KL L P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVS 173
V +++ + P AT+ LSPYL G LS R QCL +++N + T +
Sbjct: 232 VCHYKVERDFPHI---QATSKLSPYLNMGILSIR---QCLQALFRNQHGNFHLVTEGQQT 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
+ +LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA M
Sbjct: 286 WLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGM 345
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCS 291
QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTG 404
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K +G
Sbjct: 405 TDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--------SKTDLG 456
Query: 352 RDYPAPVVSHDSASKECKRKLGEAY 376
+YP P+V KE + K E +
Sbjct: 457 LNYPKPIVD----LKETRLKAIETF 477
>gi|428776804|ref|YP_007168591.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
gi|428691083|gb|AFZ44377.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
Length = 483
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 155/306 (50%), Gaps = 11/306 (3%)
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEE--LSPFRGGESEALKKLRESIS 113
P P L LP G ++P +E LG K +E + F GGE L +L++ I
Sbjct: 173 PTPEKLPPLPSEIATG-----DLPNLETLGVKLVSPDERGVLKFVGGERAGLDRLKDYIW 227
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
++ + ++K + ++ SP+L GCLS RY Y+ + +N K+ S
Sbjct: 228 QEDCLKVYKKTRNGMLG--TNDSSKFSPWLARGCLSPRYVYEEVQSYEENRVKNDST-YW 284
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L+ +L+WRD+F V N + +IPW D + W+E +TGYP +DA M
Sbjct: 285 LIFELMWRDYFRFVCLKYGNAVFYQTGLQGVKIPWKEDWQQFTLWQEGKTGYPLVDANMR 344
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
++ G+M + R VA FLT+ ++ + W G + F+ LLID D + N GNW + +
Sbjct: 345 EIATTGFMSNRGRQNVASFLTK-NLGIDWRMGAEWFESLLIDYDVSSNWGNWNYTAGVGN 403
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
+ R ++ K YDP GNY+RH+LP L+++P + I+EPW Q +G D
Sbjct: 404 DAREFRYFNIPKQSKMYDPKGNYLRHWLPELRNLPGDLIHEPWKLSSDEQKEYGVTLGVD 463
Query: 354 YPAPVV 359
YP PVV
Sbjct: 464 YPRPVV 469
>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
Length = 469
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---QEGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P I YPA +V H
Sbjct: 439 P--------AINSVLYPARLVDH 453
>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
Length = 477
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 153/303 (50%), Gaps = 17/303 (5%)
Query: 68 GDVGYFEISEVPTVEELGYKGYG-QEELSPFRGGESEALKKLRESISDKEWVANFEKPKG 126
G++G + E+ + YG +E +P GE A +L + I + +AN+E+ +
Sbjct: 181 GELGGLRLDELDLLPSKPDWAYGLRETWTP---GEKGAQARLGQFI--EHGLANYERQRD 235
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYT 186
P +P+T+ LSP+L FG ++ + L + +S ++ WR+F Y
Sbjct: 236 YPG---QPSTSRLSPHLTFGEITPFQIFAALR------RSKSSGTSKFRAEIGWREFSYH 286
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ F P+ + W +D L W+ TGYP +DA M +L + GWMH+ R
Sbjct: 287 LLFHNPDLSGRNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVR 346
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF-YQYNRIYSPVS 305
VA FL + D+ + W G F L+D+D A N +W W++ S Y RI++PV
Sbjct: 347 MIVASFLIK-DLMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVL 405
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSAS 365
G+K+DP+G+Y+R +P + +P YI+ PW AP + ++G+ YP P+V H +A
Sbjct: 406 QGEKFDPHGDYVRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAAR 465
Query: 366 KEC 368
+
Sbjct: 466 ERA 468
>gi|445499214|ref|ZP_21466069.1| FAD-bining deoxyribodipyrimidine photolyase PhrB [Janthinobacterium
sp. HH01]
gi|444789209|gb|ELX10757.1| FAD-bining deoxyribodipyrimidine photolyase PhrB [Janthinobacterium
sp. HH01]
Length = 490
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 176/381 (46%), Gaps = 32/381 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGK----PPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
G + FS +F ++++ + GG P KL P S P +
Sbjct: 134 GRQFFSYKDQVIFEKSEVLSQTGGVFSVFTPYKNAWLKKLDADP---SVLAPYHIEPHAA 190
Query: 67 VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKG 126
+PT+ ELG++ EL G A +L E + +A ++ +
Sbjct: 191 RLAPPPANAPALPTLAELGFEPSNLAELKIPTGMSGAA--QLFEDFLPR--IAGYKDARD 246
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYT 186
P+ + LS + +FG LS R+ + + D+ PV L +L+WR+F+
Sbjct: 247 YPAV---KGPSYLSLHFRFGTLSVRHLVRTVLDLTARGAGGEGAPVWL-AELIWREFYAM 302
Query: 187 VAFGTPNFDRMKGNRICKQIPWSND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+ + P+ I W DEL AAW E RTGYP +DA M QL + G+MH+
Sbjct: 303 ILYHNPHVVGGAYKPAYDAIQWETGPEADELYAAWCEGRTGYPLVDAAMAQLNQTGYMHN 362
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYS 302
R ACFL + D+ + W +G F L D D A NNG W W S S Q Y RI++
Sbjct: 363 RLRMVTACFLIK-DLGIDWRRGEAYFALHLNDFDLASNNGGWQWASSSGCDAQPYFRIFN 421
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV+ +K+D G +IR +LP LKD+ + I+ PW AP ++ DYP P+V HD
Sbjct: 422 PVTQSEKFDSKGKFIRRYLPQLKDLTDKEIHAPWLAPR--------MLPLDYPEPLVMHD 473
Query: 363 SASKECKRKLGEAYALNQKLN 383
E +++ E YA+ +K +
Sbjct: 474 ----EARKRTLERYAVVKKTD 490
>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|422306345|ref|ZP_16393526.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|408626618|gb|EKK99461.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
Length = 469
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
Length = 467
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 138/275 (50%), Gaps = 12/275 (4%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+L GE A +L I K VA+++K + P T+ LS YL+ G +S R
Sbjct: 187 DLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISVRT 241
Query: 153 FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
+Q L + + T +L WRDF+ + PN + I W N+
Sbjct: 242 IWQALQE-----NEATEGRAIFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNR 296
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
E AW+E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++
Sbjct: 297 EFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-DLLIDWRFGEKYFQQM 355
Query: 273 LIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
LID D A N G W W S + Y RI++P +K+DP G +IR ++ L ++P +Y
Sbjct: 356 LIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFDPTGKFIRKYVKELANLPDKY 415
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
I++P T Q ++G+DYP P+V H K
Sbjct: 416 IHQPEKMSETEQKEYGLLLGKDYPFPIVDHKERRK 450
>gi|422006662|ref|ZP_16353651.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
gi|414098878|gb|EKT60523.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
Length = 480
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 139/276 (50%), Gaps = 15/276 (5%)
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151
E+ F GE AL +LR+ S K V +++ + PS T+ LSPYL G LS R
Sbjct: 199 EDFQQFPAGEKSALTRLRQFCSQK--VGDYQNDRDIPSI---DGTSQLSPYLAVGVLSPR 253
Query: 152 YFYQCLTDVYQNVKKH-TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWS 209
+ L V H S + + +L+WR+F+ + P R + + I W+
Sbjct: 254 QCFNRLQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPRLSRHQPFIEWTQHIHWN 313
Query: 210 NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVF 269
+ AAW+ +TGYP +DA M QL GWMH+ R VA FL + D+ + W KG F
Sbjct: 314 DSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVK-DLLIDWRKGEKYF 372
Query: 270 DRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMP 328
L+D A NNG W W + + + RI++P + GKK+D G +IRH+LP L+ +P
Sbjct: 373 MSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHWLPELQQVP 432
Query: 329 KEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+YI+ P+ + T +YP P+V H A
Sbjct: 433 DKYIHTPYEWAVISNT------ALNYPEPIVDHKQA 462
>gi|431800794|ref|YP_007227697.1| deoxyribodipyrimidine photolyase [Pseudomonas putida HB3267]
gi|430791559|gb|AGA71754.1| deoxyribodipyrimidine photolyase [Pseudomonas putida HB3267]
Length = 480
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 181/368 (49%), Gaps = 33/368 (8%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP-LPVSLSSLPPVG 68
+ I+ S + LF P I+ + GG + F K + L S P L + P+
Sbjct: 120 SAIQAHSHLDQLLFRPGTILTR-GGDYFQVFSQFKKSCLEHLHRSLPALARQIKRQAPL- 177
Query: 69 DVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
++S P + + G++ Q + GE+EA +L + E + ++++ +
Sbjct: 178 -----QVSSDPIPQHVDGFEKPAQALRDHWPAGEAEAQARLTRFLD--ETIDDYQQLRDL 230
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDF 183
P+ KP T+ LS YL G +S R QCL + + +S + + +LLWR+F
Sbjct: 231 PA---KPGTSQLSAYLAAGVISPR---QCLHGALASNRGEFDSGSSGVQTWINELLWREF 284
Query: 184 FYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
+ + G P R + R + +PW + L AW + RTG+P IDA M QL GWMH
Sbjct: 285 YKHILTGYPQVSRHRAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMH 344
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIY 301
+ R VA FL++ ++ + W KG F R LID D A NNG W W S + Y RI+
Sbjct: 345 NRLRMIVAMFLSK-NLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIF 403
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR-DYPAPVVS 360
+PVS +++DP G +IRH+LP L+ + ++ I+ P ++ + R Y +P+V
Sbjct: 404 NPVSQSQRFDPQGRFIRHWLPELQGVDEKAIHFP--------VKSADLFARYSYHSPIVD 455
Query: 361 HDSASKEC 368
DS+ +
Sbjct: 456 LDSSRQRA 463
>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|375135573|ref|YP_004996223.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
protein [Acinetobacter calcoaceticus PHEA-2]
gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
protein [Acinetobacter calcoaceticus PHEA-2]
Length = 480
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF-------LKLAGQPLWASS 55
V+D+ + G E+F T+F P I+ +P + +F L ++G P
Sbjct: 117 VQDFLNQQGKELFLFHDRTIF-PLCSIRNQSQQPYQVFGAFKKACYSKLDISGLP--QCY 173
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
P+P SS P + +E +E+ + GE+ AL++L I D
Sbjct: 174 PIPEKQSSYP--ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDH 231
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ----NVKKHTSPP 171
+++++ + P+ T+ LSPYL G LS R QCL +++ N
Sbjct: 232 --LSDYKLERDFPNVR---GTSQLSPYLNIGILSIR---QCLQALFRAEHGNFHLTNEGQ 283
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
+ + +LLWR+F+ + F P+ + + + ++I WS++ E L AW+ +TG P IDA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKNTQKIKWSHNPEHLTAWQTGQTGIPIIDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL K GWMH+ R A FL + +M + W G F LID D A NNG W W S
Sbjct: 344 GMRQLLKTGWMHNRVRMITAMFLCK-NMLIDWRVGEQWFMEHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DPNG+YIR ++ L + + I+EP++ IQ
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPNGDYIRQWVQELAHLDNKAIHEPYSTKTNIQL----- 457
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+YP P+V KE + K E +
Sbjct: 458 ---NYPKPIVD----LKETRLKAIETF 477
>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|360038062|ref|YP_004939824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|379743509|ref|YP_005334561.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|417812104|ref|ZP_12458765.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|417816596|ref|ZP_12463226.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|418329963|ref|ZP_12940997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|418337496|ref|ZP_12946391.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|418339492|ref|ZP_12948380.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|418349168|ref|ZP_12953900.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|418353785|ref|ZP_12956510.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|419824099|ref|ZP_14347628.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|421316788|ref|ZP_15767358.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|421319836|ref|ZP_15770394.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|421323878|ref|ZP_15774405.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|421326850|ref|ZP_15777368.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|421331937|ref|ZP_15782416.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|421335570|ref|ZP_15786033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|421341106|ref|ZP_15791536.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|421346109|ref|ZP_15796493.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|422885232|ref|ZP_16931672.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|422897943|ref|ZP_16935363.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|422904100|ref|ZP_16939052.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|422915375|ref|ZP_16949824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|422926998|ref|ZP_16960003.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|423146338|ref|ZP_17133906.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|423148099|ref|ZP_17135477.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|423151885|ref|ZP_17139116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|423158508|ref|ZP_17145521.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|423162314|ref|ZP_17149186.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|423162508|ref|ZP_17149374.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|423732330|ref|ZP_17705627.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|423736965|ref|ZP_17710078.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|423900591|ref|ZP_17727949.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|423912133|ref|ZP_17728649.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|423999959|ref|ZP_17743116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|424004591|ref|ZP_17747596.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|424021751|ref|ZP_17761460.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|424028401|ref|ZP_17767998.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|424587687|ref|ZP_18027259.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|424592498|ref|ZP_18031913.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|424596361|ref|ZP_18035668.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|424603214|ref|ZP_18042348.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|424605046|ref|ZP_18044033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|424607951|ref|ZP_18046885.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|424614591|ref|ZP_18053371.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|424617076|ref|ZP_18055761.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|424620972|ref|ZP_18059501.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|424643041|ref|ZP_18080819.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|424650106|ref|ZP_18087709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|424654938|ref|ZP_18092256.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|440711204|ref|ZP_20891845.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443505134|ref|ZP_21072075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443509033|ref|ZP_21075783.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443512877|ref|ZP_21079500.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443516423|ref|ZP_21082923.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443521124|ref|ZP_21087454.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443521284|ref|ZP_21087606.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443530056|ref|ZP_21096073.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443532706|ref|ZP_21098709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443537421|ref|ZP_21103279.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|449057517|ref|ZP_21735813.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
gi|81858027|sp|Q9KNA8.1|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|340039746|gb|EGR00719.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|340044924|gb|EGR05872.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|341630144|gb|EGS55247.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|341631059|gb|EGS56000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|341631141|gb|EGS56081.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|341631864|gb|EGS56740.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|341645075|gb|EGS69231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|356421241|gb|EHH74744.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|356424231|gb|EHH77646.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|356426470|gb|EHH79778.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|356430880|gb|EHH84085.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|356434968|gb|EHH88128.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|356436434|gb|EHH89548.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|356440411|gb|EHH93352.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|356442892|gb|EHH95725.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|356446030|gb|EHH98830.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|356454850|gb|EHI07497.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|356457717|gb|EHI10224.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|356649216|gb|AET29270.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796103|gb|AFC59573.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395919246|gb|EJH30069.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|395921892|gb|EJH32711.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|395924724|gb|EJH35526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|395930735|gb|EJH41481.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|395933775|gb|EJH44514.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|395935252|gb|EJH45987.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|395938590|gb|EJH49282.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|395947636|gb|EJH58291.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|395964476|gb|EJH74693.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|395966295|gb|EJH76422.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|395969260|gb|EJH79147.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|395971527|gb|EJH81187.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|395973176|gb|EJH82746.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|395975239|gb|EJH84735.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|408009783|gb|EKG47676.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|408015828|gb|EKG53399.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|408043105|gb|EKG79126.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|408048055|gb|EKG83526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|408049864|gb|EKG85052.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|408058760|gb|EKG93545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|408613762|gb|EKK87048.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|408620829|gb|EKK93833.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|408652134|gb|EKL23366.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|408653028|gb|EKL24205.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|408664204|gb|EKL35043.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|408850645|gb|EKL90594.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|408854708|gb|EKL94456.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|408877826|gb|EKM16851.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|408880773|gb|EKM19691.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|439972691|gb|ELP48934.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443430432|gb|ELS73001.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443434270|gb|ELS80427.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443438064|gb|ELS87794.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443442174|gb|ELS95487.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443445153|gb|ELT01875.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443452607|gb|ELT12789.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443459626|gb|ELT27020.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443464052|gb|ELT35000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443467430|gb|ELT42086.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|448263228|gb|EMB00475.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|428779828|ref|YP_007171614.1| DASH family cryptochrome [Dactylococcopsis salina PCC 8305]
gi|428694107|gb|AFZ50257.1| cryptochrome, DASH family [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 159/309 (51%), Gaps = 11/309 (3%)
Query: 53 ASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEE--LSPFRGGESEALKKLRE 110
AS P P L SL + G ++PT+EELG K ++E + F GGES +K+L E
Sbjct: 170 ASFPSPDRLPSLSSEINCG-----DLPTLEELGVKTPLKDERGVLNFIGGESAGIKRLSE 224
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP 170
I +++ + +++ + ++ SP+L GCLS RY Y + Y+ + +
Sbjct: 225 YIWEEDCLKVYKETRNGMLG--ANYSSKFSPWLARGCLSPRYIYDQV-QTYEEERVKNNS 281
Query: 171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
L+ +L+WRD+F V N + QI W D E W+E +TGYP +DA
Sbjct: 282 TYWLIFELMWRDYFRFVCLKYGNSVFYQTGLQGVQIQWKEDWERFKLWQEGKTGYPLVDA 341
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
M ++ K G+M + R VA FLT+ ++ + W G + F+ LLID D N GNW + +
Sbjct: 342 NMREIAKTGFMSNRGRQNVASFLTK-NLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAG 400
Query: 291 SSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
+ R ++ + YDP G+Y+RH+LP L+ +P + I++P Q I+
Sbjct: 401 VGNDARDFRYFNIPKQSRNYDPKGDYLRHWLPELRKIPGDLIHQPEKLSQVQQKEYGVIL 460
Query: 351 GRDYPAPVV 359
G DYP PVV
Sbjct: 461 GVDYPRPVV 469
>gi|383787192|ref|YP_005471761.1| deoxyribodipyrimidine photolyase [Fervidobacterium pennivorans DSM
9078]
gi|383110039|gb|AFG35642.1| deoxyribodipyrimidine photolyase [Fervidobacterium pennivorans DSM
9078]
Length = 446
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 177/370 (47%), Gaps = 18/370 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K ++GI V L NP +G KP + F K + S+PLPV
Sbjct: 79 IKKELISSGINVECFDGFLLHNPNSFFTADG-KPYGVFTPFWKKFQNEIVVSAPLPVPER 137
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD--KEWVAN 120
DV + ++ + ++ K Y + E + + E +A K+L IS + N
Sbjct: 138 LQGVEFDVHLERLEDLNLLPKI--KWYAEME-NFWSVSEQDAQKRLNWFISHALDGYGEN 194
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
++P D T+++SPYL G +S R + + + +N + + + +L W
Sbjct: 195 RDRPDLD-------GTSLMSPYLASGLISPRQIWHSVVNSKKNGVSEGAE--AFLRELAW 245
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD-ELLAAWREARTGYPWIDAIMVQLRKWG 239
R+F Y V + P+ + PW D + W + TG P IDA M QL K G
Sbjct: 246 REFSYHVLYHNPDMVNANLKKEFDAFPWRWDKTDDYVKWTKGLTGIPIIDAGMRQLWKTG 305
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYN 298
WMH+ R VA +LT+ ++ +HW+ G + F L+D+D A N W W + C + Y
Sbjct: 306 WMHNRVRMIVASWLTK-NLLIHWKIGEEWFWDTLVDADIANNVQGWQWTAGCGADAAPYF 364
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++PV KK+DP G YIR ++P L +P EYI+EPW AP+ + +G+DYP P+
Sbjct: 365 RIFNPVLQSKKFDPKGMYIRKWVPELAKLPDEYIHEPWNAPVYLLKMIGLELGKDYPLPM 424
Query: 359 VSHDSASKEC 368
S + K
Sbjct: 425 ASIEETRKRA 434
>gi|411010414|ref|ZP_11386743.1| deoxyribodipyrimidine photolyase [Aeromonas aquariorum AAK1]
Length = 473
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 150/276 (54%), Gaps = 32/276 (11%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+EA ++L + + ++ V ++ + + P+ T+VLSPYL G +S R QC+
Sbjct: 206 GEAEASRRLNDFL--EQAVLDYGETRDFPAI---AGTSVLSPYLAAGIISPR---QCVAA 257
Query: 160 VYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND 211
+ Q + + P + +L+WR+F+ + P + NR K +PWS D
Sbjct: 258 LQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPT---LSMNRPFKPETSALPWSWD 314
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ AAW E RTGYP +DA M L GWMH+ R VA FLT+ D+ +HW G D F
Sbjct: 315 PDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 272 LLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
LID D A NNG W W + + + Y R+++P + G+++DP G +IR ++ L D+P
Sbjct: 374 RLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEFIRTWVSELADLPAA 433
Query: 331 YIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
Y+++P W L ++ R RDYPAP+V H A
Sbjct: 434 YLHQPHDW---LRLKGR------RDYPAPMVDHAVA 460
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 175/383 (45%), Gaps = 37/383 (9%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAS------S 55
+VK+ GI + L P +I+ K+ P Y P W S +
Sbjct: 112 QVKEALQEKGITSETYWDQLLHAPGEILTKSNNDPYKVYT--------PFWRSWVKEDKA 163
Query: 56 PLPVSLSSLPPVGD-----VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
+ S+ L + D V + ++PT ++LGY G + GE+ A ++L
Sbjct: 164 NIAESIEKLDSLSDEEINTVKNIGLIDLPTAKDLGY---GWDIPLLLELGETAAKEQLHY 220
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP 170
+ + ++++ + P+ T+ LSP KFG + R +Q + Y+N + +
Sbjct: 221 FCNST--IYSYQEQRNFPAI---DGTSKLSPAFKFGVIGIREVWQTTIEAYENTRSDEAR 275
Query: 171 PVSLVGQ--LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
Q + WR+F+ + P + PW N+++ AW E +TGYP +
Sbjct: 276 ENIQTWQQEIAWREFYQHCLYFFPELAEGPYREEFQDFPWDNNEDHFQAWCEGKTGYPIV 335
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M QL + GWMH+ R VA FLT+ D+ ++W+ G F + LID D + NNG W W
Sbjct: 336 DAAMRQLNETGWMHNRCRMIVASFLTK-DLMINWQWGEKYFMQKLIDGDLSANNGGWQWS 394
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
+ S + RI++P S +KYDP+G YIR ++P + + EY+ PL +
Sbjct: 395 ASSGMDPKPLRIFNPASQAQKYDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAHSCG-- 452
Query: 349 IIGRDYPAPVVSHDSASKECKRK 371
YP P+V H +E K +
Sbjct: 453 -----YPQPIVDHKHQQREFKER 470
>gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum IPO1609]
gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein
[Ralstonia solanacearum IPO1609]
Length = 522
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 11/234 (4%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD- 195
+ LS +L+FG +S R + + + + + +L+WRDF++ + P+
Sbjct: 266 SYLSTHLRFGTVSIRTLAAHAHAAMLHGSRGAA---TWLSELIWRDFYFMILHHRPDLAG 322
Query: 196 ----RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
R + +RI + + D AAWR+ARTGYP +DA M+Q+R+ G+MH+ R A
Sbjct: 323 GASFRPEFDRI-RWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLRMVAAS 381
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKY 310
FL + D+ V W +G F L D D+A NNG W W + S Q + RI++PV+ +K+
Sbjct: 382 FLIK-DLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEKF 440
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
DP G++IR +LP L +P Y++ PWTAP + A +G YP P+V H +A
Sbjct: 441 DPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAA 494
>gi|384422583|ref|YP_005631942.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 19/251 (7%)
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ--NVKKHTSPPV 172
+E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y ++ + +
Sbjct: 218 RERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYHESSMGELSEGAQ 271
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
+ +L+WR+F+ + PN + + ++ W ND+E W E +TGYP +DA
Sbjct: 272 VWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAA 331
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A NNG W W + +
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 292 SFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT P +
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP--------AVN 442
Query: 351 GRDYPAPVVSH 361
YPA +V H
Sbjct: 443 SVLYPARLVDH 453
>gi|424761284|ref|ZP_18188866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
R508]
gi|402402268|gb|EJV34989.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
R508]
Length = 477
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 180/383 (46%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYREQIARIP--------------LKHYSVGEKTARRCLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASAPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWANDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQALFLYEASKEIHQEMNN 473
>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 492
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 77 EVPTVEELGYKGYGQEE-LSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
E+PT+E +G+ G E L P G L+ I + +F KG
Sbjct: 195 EIPTLESMGFCKTGIEAYLPPGAEGGQAFLEDFLPRIDQYQVGRDFPAIKG--------- 245
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
+ LS +L+FG LS R + + ++ + + + +L+WRDF++ + P
Sbjct: 246 VSYLSTHLRFGMLSIR---GLVREAHRRMLAGSMGATIWLSELIWRDFYFMILANHPRLA 302
Query: 196 RMKGNR-ICKQIPW---SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
+ + I W S +L AAW E +TGYP +DA M QL + G+MH+ R VA
Sbjct: 303 KGASFKPDYDNIVWEQGSVAKKLFAAWCEGKTGYPLVDAAMHQLNQSGYMHNRLRMVVAS 362
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKY 310
FLT+ D+ V W G F L D + + NNG W W S S Q Y RI++P++ +K+
Sbjct: 363 FLTK-DLGVDWRWGEAYFAEHLNDFELSSNNGGWQWASSSGCDAQPYFRIFNPITQSEKF 421
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
DP G +IR +LP L + K+ I+ PW A A +GRDYP PVV HD A K+
Sbjct: 422 DPEGKFIRRYLPQLNHLSKKSIHAPWKAGHIELEAAGITLGRDYPLPVVDHDEARKKT 479
>gi|418296029|ref|ZP_12907873.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539461|gb|EHH08699.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 479
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 180/368 (48%), Gaps = 30/368 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL--AGQPLWASSPLPVSLSSLPPVG 68
G+ V S H L P+ + K+GG P Y F + G+ A + P SL + P
Sbjct: 121 GLTVRSFSGHLLHEPSRLQTKSGG-PYRVYTPFWRALEGGEEPHAPADAPKSLKA--PKA 177
Query: 69 DVGYFEISE---VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPK 125
+ ++S+ +PT + + + + +P GG E L + + +E+ +
Sbjct: 178 WLESEKLSDWKLLPTKPD--WAKHFSDIWAPGEGGAQEKLDDFIDGA-----LKGYEEGR 230
Query: 126 GDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFY 185
P+ K AT++LSP+L G +S + + +++ ++ +++WR+F Y
Sbjct: 231 DFPA---KDATSMLSPHLALGEISPATVWHATKGLSRHIA--SNDISRFRKEIVWREFCY 285
Query: 186 TVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ F P D N W +D+ AW TGYP +DA M QL K G MH+
Sbjct: 286 HLLFHFPGLDEKNWNESFDAFGWRDDETSFKAWTRGMTGYPIVDAGMRQLWKHGTMHNRV 345
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CSSFFYQYNRI 300
R VA FL + + + W KG F L+D+D A N NW W++ S FF RI
Sbjct: 346 RMIVASFLIK-HLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFF----RI 400
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++P+ G+K+D +GNY+R F+P L+ + ++YI++P+ AP + +A +G+ YP P+V
Sbjct: 401 FNPILQGEKFDADGNYVRRFVPELEKLDRKYIHKPFEAPKEVLKKAGIELGKTYPLPIVD 460
Query: 361 HDSASKEC 368
H A +
Sbjct: 461 HGKARERA 468
>gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 117 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 175
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 176 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 230
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 231 -LGGYAAERDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 286
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 287 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 346
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 347 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 465
Query: 356 APVVSHDSASKECKRKLG 373
P+V+HD+A + G
Sbjct: 466 LPIVAHDAARRRALDAFG 483
>gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
Length = 477
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 181/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGNKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYGEQIARIP--------------LTHYSVGEKTARRCLNTFIDQK--LRSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASAPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064]
Length = 467
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 137/268 (51%), Gaps = 12/268 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +L I K VA+++K + P T+ LS YL+ G +S R +Q L +
Sbjct: 194 GERAANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISIRTIWQSLQE 248
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ T + +L WRDF+ + PN + I W N+ E AW+
Sbjct: 249 T-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAWQ 303
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D A
Sbjct: 304 EGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQMLIDYDPA 362
Query: 280 INNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++P + +K+D G +IR ++ L ++P +YI++P
Sbjct: 363 SNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEKM 422
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASK 366
T Q ++G+DYP P+V H K
Sbjct: 423 SETEQKEHGLLLGKDYPFPIVDHKERRK 450
>gi|53719958|ref|YP_108944.1| DNA photolyase [Burkholderia pseudomallei K96243]
gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
Pakistan 9]
gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
gi|386861077|ref|YP_006274026.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026b]
gi|418380478|ref|ZP_12966443.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354a]
gi|418537248|ref|ZP_13102889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026a]
gi|418540357|ref|ZP_13105904.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258a]
gi|418546604|ref|ZP_13111810.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258b]
gi|418552828|ref|ZP_13117676.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354e]
gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
Pakistan 9]
gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
gi|385350248|gb|EIF56796.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026a]
gi|385362092|gb|EIF67936.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258a]
gi|385364061|gb|EIF69807.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258b]
gi|385372519|gb|EIF77626.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354e]
gi|385377308|gb|EIF81897.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354a]
gi|385658205|gb|AFI65628.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026b]
Length = 486
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 117 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 175
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 176 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 230
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 231 -LGGYAAERDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 286
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 287 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 346
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 347 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 465
Query: 356 APVVSHDSASKECKRKLG 373
P+V+HD+A + G
Sbjct: 466 LPIVAHDAARRRALDAFG 483
>gi|219682219|ref|YP_002468603.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|384226103|ref|YP_005617266.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384227161|ref|YP_005618911.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|219621952|gb|ACL30108.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|311086037|gb|ADP66119.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086610|gb|ADP66691.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
Length = 483
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 161/307 (52%), Gaps = 33/307 (10%)
Query: 95 SPFRGGESEALKKLRESISDK--EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
S F GE EA+ +L+ K ++ + P D AT++LSPYL G +SSRY
Sbjct: 201 SFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLD-------ATSMLSPYLSAGIISSRY 253
Query: 153 FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC-KQIPWSND 211
+ L ++ + S Q+LWR+F+Y + G P R + K+I W N+
Sbjct: 254 CLKVLLKTKNSLPLNVLLTSSWFDQILWREFYYHLLIGFPKISRSESLVTWEKEIHWINN 313
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ AW+E TG+P IDA M QL + GWMH+ R + FL + ++ ++W +G + F
Sbjct: 314 IKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVK-NLLINWREGEEYFIS 372
Query: 272 LLIDSDWAINNGNWLW---LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMP 328
LID D A+NNG W W + C S Y RI++P+ K +D +GN+I+ F+P LK++P
Sbjct: 373 NLIDGDLALNNGGWQWSASVGCDSV--PYIRIFNPLHQSKTFDESGNFIKKFIPELKNVP 430
Query: 329 KEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQV 386
+I++P W+ + DYP P++++ + K + +L ++ ++
Sbjct: 431 NHHIHQPHEWSKQKNFKI--------DYPNPIINYSESRK-------TSLSLFKQARLKL 475
Query: 387 SEDGLKN 393
++GLKN
Sbjct: 476 HKNGLKN 482
>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|417818812|ref|ZP_12465432.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|421349744|ref|ZP_15800113.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|423938868|ref|ZP_17732353.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|423968686|ref|ZP_17735903.1| DNA photolyase family protein [Vibrio cholerae HE-46]
gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|340043526|gb|EGR04484.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|395956361|gb|EJH66955.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|408664649|gb|EKL35479.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|408667250|gb|EKL38000.1| DNA photolyase family protein [Vibrio cholerae HE-46]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---QEGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGEPSEGAQVWLSELIWREFYQHLVAIEPNLSKSLDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
Length = 479
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 143/267 (53%), Gaps = 12/267 (4%)
Query: 97 FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR-YFYQ 155
++ GES AL +L +D+ +A + + + P+ +P T+ LSP L FG LS R ++Q
Sbjct: 203 WQAGESAALARLEAFAADR--LARYAQDRDRPA---EPGTSGLSPALHFGELSPRQVWWQ 257
Query: 156 CLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND--DE 213
+ V + + + +L WR+F + + + P+ + PW D D
Sbjct: 258 VMAAREAGVPEDAC--ETFLSELGWREFAHHLLWSHPDLGDAPVDDRFGAFPWRPDPGDG 315
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
L AW+ RTG P +DA M +L + GWMH+ R FL + + + W++G F L
Sbjct: 316 WLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVTGSFLVK-HLRLPWQRGERWFRDTL 374
Query: 274 IDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
+D D A N W W++ C + Y RI++PV G+++DP G Y+R +LP L ++P +YI
Sbjct: 375 VDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGERFDPQGRYVRRWLPALANLPDKYI 434
Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+ PWTAP + RA +G DYP P++
Sbjct: 435 HAPWTAPEAVLRRAGVTLGSDYPCPLI 461
>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---QEGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---QEGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---QEGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|403519410|ref|YP_006653544.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BPC006]
gi|403075053|gb|AFR16633.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BPC006]
Length = 497
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 128 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 186
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 187 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 241
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 242 -LGGYAAERDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 297
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 298 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 357
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 358 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 416
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 417 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 476
Query: 356 APVVSHDSASKECKRKLG 373
P+V+HD+A + G
Sbjct: 477 LPIVAHDAARRRALDAFG 494
>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
Length = 469
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 141/260 (54%), Gaps = 21/260 (8%)
Query: 108 LRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK 165
+R + D +E V ++ + + P+ + T++LSPYL G LS+R QC+ +Y+ +
Sbjct: 209 IRTQLRDFCRERVQDYHQWRDFPA---REGTSILSPYLAIGALSAR---QCVARLYRESE 262
Query: 166 KHTSPPVSLV--GQLLWRDFFYTVAFGTPNFDRMKGN-RICKQIPWSNDDELLAAWREAR 222
+ V +L+WR+F+ + PN + + ++ W ND E W E
Sbjct: 263 MSALSEGAQVWLSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEKFQRWCEGN 322
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A NN
Sbjct: 323 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANN 381
Query: 283 GNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT P
Sbjct: 382 GGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-- 439
Query: 342 IQTRAKCIIGRDYPAPVVSH 361
+ YP P+V H
Sbjct: 440 ------AVNSVLYPPPLVDH 453
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 183/368 (49%), Gaps = 29/368 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ--PLWASSPLPVS 60
+K+ S GI V + TL++P D+ N K P + +F K + ++ P P
Sbjct: 119 LKNALSEIGITVQTFWGSTLYHPDDL-PFNLLKIPELFTNFRKQVEKKSTIYPPFPTPKR 177
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKG--YGQEELSPFRGGESEALKKLRESISDKEWV 118
L SLP V E+ E+P + + G + + + + PF+GGE+ L +L + K+ +
Sbjct: 178 LPSLPSV------EVGELPQLADFGLESPIFDERAVLPFQGGETAGLARLNDYFWKKDCL 231
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
+++ + ++ SP+L GCLS R+ Y+ + Q K+ S LV +L
Sbjct: 232 KVYKQTRN--GMLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQIKNDST-YWLVFEL 288
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQ-------IPWSNDDELLAAWREARTGYPWIDAI 231
+WRDFF + GNRI + IPW D + W++ +TG+P IDA
Sbjct: 289 IWRDFFRFIC-------AKHGNRIFRPSGLQGIPIPWKEDWDRFTLWQQGKTGFPLIDAN 341
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M +L G+M + R VA FLT+ ++ ++W+ G + F+ LLID D N GNW + +
Sbjct: 342 MRELAATGFMSNRGRQNVASFLTK-NLGINWQIGAEWFESLLIDYDVCSNWGNWNYTAGV 400
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+ R ++ K YDP G Y++H+LP L +P +++PWT Q + +G
Sbjct: 401 GNDARGFRYFNIQKQSKDYDPQGYYVKHWLPELNSLPAAKVHQPWTLTSAEQKQFGVRLG 460
Query: 352 RDYPAPVV 359
DYP PVV
Sbjct: 461 VDYPNPVV 468
>gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
MSHR346]
gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
MSHR346]
Length = 486
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 117 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 175
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 176 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 230
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 231 -LGGYAAERDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 286
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 287 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 346
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 347 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 465
Query: 356 APVVSHDSASKECKRKLG 373
P+V+HD+A + G
Sbjct: 466 LPIVAHDAARRRALDAFG 483
>gi|422016104|ref|ZP_16362694.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
gi|414095551|gb|EKT57213.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
Length = 481
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 152/291 (52%), Gaps = 25/291 (8%)
Query: 82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSP 141
++L ++ E + F GE AL++LR + +E ++++ + PS T+ LSP
Sbjct: 189 QQLLFEHDAVEIAAHFPSGEVAALQRLR--LFCRERAQDYQQNRDIPSL---DGTSQLSP 243
Query: 142 YLKFGCLSSRYFYQCLTDVY-QNVKKHTSP---PVSLVGQLLWRDFFYTVAFGTPNFDRM 197
YL G LS R QCL + +N SP + + +L+WR+F++ + P+ R
Sbjct: 244 YLAVGVLSPR---QCLNRLLTENPHTFDSPDSGSFTWLNELIWREFYHHLLVAFPHLCRH 300
Query: 198 KG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRG 256
+ K I W++ D AW+ TGYP +DA M QL GWMH+ R A FL +
Sbjct: 301 QPFIEWTKHIQWNSSDTDFNAWKNGLTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVK- 359
Query: 257 DMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGN 315
D+ + W +G F + LID A NNG W W + + + RI++P + GKK+DP+G
Sbjct: 360 DLLIDWRRGEQYFIQQLIDGTLAANNGGWQWSASTGIDASPWFRIFNPTTQGKKFDPDGK 419
Query: 316 YIRHFLPVLKDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
++RH+LP L+ +P +YI+ P W + I+ DYP P+V H A
Sbjct: 420 FVRHWLPELRTVPDQYIHTPHEWAE------STRVIL--DYPTPIVDHKQA 462
>gi|374619940|ref|ZP_09692474.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
gi|374303167|gb|EHQ57351.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
Length = 481
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 130/235 (55%), Gaps = 8/235 (3%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T+ LSP+LKFG +S R + + + TS + ++ WR+F Y + FD
Sbjct: 238 TSRLSPHLKFGEISPRQVWASAQQRKLSAPEWTSAIDKFLAEIGWREFCYQL---IDLFD 294
Query: 196 RMKGNRICKQI---PWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
M Q PW N +E L AW+ TGYP +DA M +L + G+MH+ R VA F
Sbjct: 295 AMPDRPFKDQFAGFPWDNSEEHLKAWQRGMTGYPIVDAGMRELWQTGFMHNRVRMIVASF 354
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYD 311
LT+ + VHW +G F L+D+D A N +W W++ S + Y RI++P++ G+K+D
Sbjct: 355 LTK-HLLVHWLEGERWFWDCLLDADIASNACSWQWVAGSGADAAPYFRIFNPIAQGQKFD 413
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
P G Y++ + P L DMPK++++ PW AP A +G+ YP P+V H +A +
Sbjct: 414 PEGEYVKRWCPELADMPKKFVHAPWEAPAMTLASAGVELGKTYPEPIVDHKTARQ 468
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 174/362 (48%), Gaps = 25/362 (6%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA---GQPLWASSPLP----VSLSS 63
GIE S S L P ++ G+P Y +F + G+P PLP + +S
Sbjct: 138 GIEARSFNSALLHEPW-TVENKSGEPFRVYSAFWRACLAKGKP---DKPLPAPETLVAAS 193
Query: 64 LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEK 123
P +G +++ +PT + + S + GE+ A ++L + + V ++
Sbjct: 194 APASDSIGDWKL--LPT-----KPNWAKRFESAWTPGENGAQERLTGFLDEA--VNRYKA 244
Query: 124 PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDF 183
+ P AT+ LSP+L FG + R + + + + ++ WR+F
Sbjct: 245 ERDRPDIE---ATSRLSPHLHFGEIGPRQIWHATRAAMAAHDLNEASAEKFLSEVGWREF 301
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+ + + PW +D+ L AW+ TGYP +DA M +L GWMH+
Sbjct: 302 SHHLLYHNDALPEHPLRPEFADFPWHENDKALTAWQRGLTGYPIVDAGMRELWATGWMHN 361
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYS 302
R VA FL + D+ + W++G F L+D+D A N +W W++ C + Y RI++
Sbjct: 362 RVRMIVASFLVK-DLLIPWQEGEAWFWDTLVDADLANNAASWQWVAGCGADAAPYFRIFN 420
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV G+K+DP G Y+R ++P L MP +I++PW AP + +A +G+ YP P+V H
Sbjct: 421 PVLQGEKFDPEGAYVRRWVPELAKMPASHIHKPWLAPDDVMRQAGVTLGKSYPNPIVDHG 480
Query: 363 SA 364
+A
Sbjct: 481 TA 482
>gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957]
gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum CFBP2957]
Length = 522
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 130/237 (54%), Gaps = 23/237 (9%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL-VGQLLWRDFFYTV-------A 188
+ LS +L+FG +S R L + H S + + +L+WRDF++ + A
Sbjct: 266 SYLSTHLRFGTVSIR----TLAARAHSAMLHGSRGAATWLSELIWRDFYFMILHHRPDLA 321
Query: 189 FGT---PNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
GT P FDR++ + D AAWR+ARTGYP +DA M+Q+R+ G+MH+
Sbjct: 322 EGTSFRPEFDRIR------WVGGETGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRL 375
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPV 304
R A FL + D+ V W +G F L D D+A NNG W W + S Q + RI++PV
Sbjct: 376 RMVTASFLIK-DLGVDWRRGEHHFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPV 434
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+ +K+DP G++IR +LP L +P Y++ PWTAP + A +G YP P+V H
Sbjct: 435 TQSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYPRPIVEH 491
>gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
Length = 486
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 180/370 (48%), Gaps = 18/370 (4%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVSLSSLPPVG 68
GI V + + LF P D++ +G +P + ++ + A + + PL P L+ G
Sbjct: 125 GIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRRLNG----G 179
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKEWVANFEKP 124
+ + ++ LG + G + R GE A ++LR + + + +
Sbjct: 180 ALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR--LGGYAAE 237
Query: 125 KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFF 184
+ P +T+ LSPY++FG LS+R + D Y + + + +L WR+F
Sbjct: 238 RDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLSELGWREFG 294
Query: 185 YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+T P+ R +PW +D LAAWR TGYP++DA M +L GWMH+
Sbjct: 295 WTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNR 354
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSP 303
R A FL + + + W G F L+D+D A N NW W++ C + Y RI++P
Sbjct: 355 VRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNP 413
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
V+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP P+V+HD+
Sbjct: 414 VAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDA 473
Query: 364 ASKECKRKLG 373
A + G
Sbjct: 474 ARRRALDAFG 483
>gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404280146|ref|YP_006681044.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404285957|ref|YP_006692543.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404226781|emb|CBY48186.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404244886|emb|CBY03111.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 467
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 137/268 (51%), Gaps = 12/268 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +L I K VA+++K + P T+ LS YL+ G +S R +Q L +
Sbjct: 194 GERAANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISIRTIWQTLQE 248
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ T + +L WRDF+ + PN + I W N+ E AW+
Sbjct: 249 T-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREYFKAWQ 303
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D A
Sbjct: 304 EGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQMLIDYDPA 362
Query: 280 INNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++P + +K+D G +IR ++ L ++P +YI++P
Sbjct: 363 SNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEKM 422
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASK 366
T Q ++G+DYP P+V H K
Sbjct: 423 SETEQKEHGLLLGKDYPFPIVDHKERRK 450
>gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium
petroleiphilum PM1]
gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium
petroleiphilum PM1]
Length = 497
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 168/380 (44%), Gaps = 32/380 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V+ + GI F P + D + G P + + + W P L
Sbjct: 126 QVRGALAQTGI-AFHPAKDQVVFDTDEVLTGAGTPYGVFTPY-----KNAWLKKLEPFYL 179
Query: 62 SSLPPVGDVGYF------EISEVPTVEELGYK--GYGQEELSPFRGGESEALKKL-RESI 112
+ P G E + VPT+ +G++ +L+P G L+ E I
Sbjct: 180 QAYPVGRHAGALAPRPAGEAAGVPTLAAIGFEPTNLAALKLAPGTAGGRALLEDFGDERI 239
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
+ +F KG + LS +L+FG LS R + D + +
Sbjct: 240 DRYDQTRDFPAVKG---------PSYLSVHLRFGTLSIRELARLAWD---RARAGSRGAE 287
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND---DELLAAWREARTGYPWID 229
+ +L+WRDF++ V P +I W + D L AAW E RTGYP +D
Sbjct: 288 VWLSELIWRDFYHQVLHHHPQVVERSFKPEYDKIKWEHGKHADALFAAWCEGRTGYPLVD 347
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
A M+Q+ + G+MH+ R VA FL + D+ + W +G F L D D A NNG W W S
Sbjct: 348 AAMLQINQTGYMHNRLRMVVASFLCK-DLGLDWRRGERYFAEKLNDYDLAANNGGWQWAS 406
Query: 290 CSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
S Q Y RI++PVS +K+D G +IR +LP L +P ++ PW A A
Sbjct: 407 SSGCDAQPYFRIFNPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAPWDAKPLDLVAAGL 466
Query: 349 IIGRDYPAPVVSHDSASKEC 368
++GRDYP P+V H+ A +
Sbjct: 467 VLGRDYPEPIVRHELARERT 486
>gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
Length = 469
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|423699267|ref|ZP_17673757.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q8r1-96]
gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|387996309|gb|EIK57639.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q8r1-96]
Length = 483
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 180/364 (49%), Gaps = 27/364 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V + G+E S + LF P ++ K G + + F K+ L S P SL
Sbjct: 112 EVARVLNDQGVEFHSHLDQLLFKPGSVLTKTGNYFQV-FSQFRKVCYSRLHFSLP---SL 167
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
+ P + VPT + G+ + + + GE+EA ++L ++ D+ + ++
Sbjct: 168 VATPARQALTGIARDPVPTQVD-GFAPPSEALRALWPAGETEARRRL-DTFVDQH-IDDY 224
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ----NVKKHTSPPVSLVGQ 177
+ + P+ +P T+ LS YL G +S R QCL Q + ++ V+ + +
Sbjct: 225 QGERDYPA---RPGTSQLSAYLVAGVVSPR---QCLHAALQANQGEFESGSAGAVTWINE 278
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
LLWR+F+ + G P R + R + + W L AW++ARTG P IDA M QL
Sbjct: 279 LLWREFYKHILVGYPRVSRHRAFRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQLL 338
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFY 295
+ GWMH+ R VA FLT+ ++ + W +G F + LID D A NNG W W S +
Sbjct: 339 ETGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSA 397
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
+ RI++P+S +K+D G +I+ +LP L D+ K+ ++ P T+ DYP
Sbjct: 398 PWFRIFNPLSQSEKFDREGLFIKRWLPELNDLDKQQVHSP-------NTQGGLFGAVDYP 450
Query: 356 APVV 359
AP+V
Sbjct: 451 APIV 454
>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
Length = 484
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 2/239 (0%)
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
T+ LSP+L+FG +S+R + + + +L+WRDF Y + +
Sbjct: 243 GTSRLSPHLRFGEISARQAWYATLAFMDEHHSARAGGEKFLSELIWRDFNYHQLYHRRDI 302
Query: 195 DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
R I W +D AWR +TG+P IDA M QL GWMH+ R VA FLT
Sbjct: 303 SRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLT 362
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPN 313
+ ++ + W KG + F L+D D A N G+W W++ C Y R+++P+ G+K+D
Sbjct: 363 K-NLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAE 421
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
G Y+RH++P L + +++++P+ AP + T A +G YP P++ ++ +E +++L
Sbjct: 422 GQYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDLQASQREARKRL 480
>gi|423197809|ref|ZP_17184392.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
gi|404630927|gb|EKB27571.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
Length = 473
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 150/276 (54%), Gaps = 32/276 (11%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+EA ++L + + ++ V ++ + + P+ T+VLSPYL G +S R QC+
Sbjct: 206 GEAEASRRLNDFL--EQAVLDYGETRDFPAI---AGTSVLSPYLAAGIISPR---QCVAA 257
Query: 160 VYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND 211
+ Q + + P + +L+WR+F+ + P + NR K +PWS D
Sbjct: 258 LQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPT---LSMNRPFKPETSALPWSWD 314
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ AAW E RTGYP +DA M L GWMH+ R VA FLT+ D+ +HW G D F
Sbjct: 315 PDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 272 LLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
LID D A NNG W W + + + Y R+++P + G+++DP G +IR ++ L D+P
Sbjct: 374 RLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEFIRIWVSELADLPAA 433
Query: 331 YIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
Y+++P W L ++ R RDYPAP+V H A
Sbjct: 434 YLHQPHDW---LRLKGR------RDYPAPMVDHAVA 460
>gi|217976568|ref|YP_002360715.1| deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
Length = 486
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 174/360 (48%), Gaps = 24/360 (6%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGG-----KPPLTYQSFLKLAGQPLWASSPLPVSLSS 63
T+G+E S H L P DI + +G P S G+PL P P L +
Sbjct: 124 TSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPL----PAPDRLPA 179
Query: 64 LP-PVGDVGYFEISEVPTV-EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
P P G + I + + E+ + G + P G E LK E +A++
Sbjct: 180 APIPRGALRTTSIEALALLPEKPDWAGGLRAAWRPGENGAQERLKAFLEGE-----IASY 234
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+ PSA A + LSP+L+FG + R + + + N + V + +L WR
Sbjct: 235 SLERNRPSA---DAVSRLSPHLRFGEIGPRQIFAAVRTAWDNAAQKGG--VKFLAELGWR 289
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDD-ELLAAWREARTGYPWIDAIMVQLRKWGW 240
+F Y ++F P+ R R ++PW L+AW+ TGYP IDA M +L G+
Sbjct: 290 EFNYHLSFYHPDAARQNIQRRFDKMPWREPAPRELSAWQRGETGYPLIDAGMRELWATGY 349
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYNR 299
MH+ R VA FL + + + W G + F L D+D A N NW W++ S Y R
Sbjct: 350 MHNRVRMVVASFLIK-HLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAAPYFR 408
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
I++PV G+K+D G+Y+R ++P L +P ++I++P+ AP + A +G++YP P+V
Sbjct: 409 IFNPVLQGEKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYPRPIV 468
>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227119239|ref|YP_002821134.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
Length = 469
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 149/277 (53%), Gaps = 21/277 (7%)
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
Y + + +P+ +LRE ++ V ++ + + P+ + T+ LSPYL G L
Sbjct: 194 YPRIDSTPWAADFETVRAQLREFCRER--VQDYHQARDFPA---QEGTSSLSPYLAIGVL 248
Query: 149 SSRYFYQCLTDVYQ--NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQ 205
S+R QC+ +Y ++ + + + + +L+WR+F+ + PN + + +
Sbjct: 249 SAR---QCVARLYHESSMGELSEGAQAWLSELIWREFYQHLVAIEPNLSKSRDFVEWGAR 305
Query: 206 IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
+ W ND+E W E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G
Sbjct: 306 LEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWG 364
Query: 266 RDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
F LID D+A NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L
Sbjct: 365 ERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPEL 424
Query: 325 KDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+ + YI++PW P + YPA +V H
Sbjct: 425 RSVSSAYIHQPWAYP--------AVNSVLYPARLVDH 453
>gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
gi|421512360|ref|ZP_15959167.1| Deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29212]
gi|422685955|ref|ZP_16744168.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
gi|422718954|ref|ZP_16775605.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
gi|401674473|gb|EJS80824.1| Deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29212]
Length = 477
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 181/383 (47%), Gaps = 36/383 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSS------- 63
I+ FS L +I + +G K + + K P +P+PVS ++
Sbjct: 118 NIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAP--KETPIPVSYTAEKIFSAC 175
Query: 64 LPPVGDVGYFE-ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P + Y E I+ +P L+ + GE A + L I K + ++E
Sbjct: 176 LFPEEEAAYGEQIARIP--------------LTHYSVGEKTARRCLNTFIDQK--LQSYE 219
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+ P + T+ LS +L+ G LS R +Q L ++ K T +L WRD
Sbjct: 220 NKRDFP---YQDQTSHLSTFLRTGELSIRTIWQELASAPSSLSKET-----FKKELAWRD 271
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ + P + I W+ND E+ W++ TGYP IDA M QL + GWMH
Sbjct: 272 FYNMIYSTFPQQKEEVIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMH 331
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIY 301
+ R A FL + ++ + W G F ++LID D A N G W W S + Y RI+
Sbjct: 332 NRLRMITASFLVK-NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIF 390
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P+ KK+D +G +I+ ++P LK +P++YI++P +QT+ +G +YP P+V +
Sbjct: 391 NPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDY 450
Query: 362 DSASKECKRKLGEAYALNQKLNG 384
S+ K+ + ++Q++N
Sbjct: 451 ASSKKQTLFLYEASKEIHQEMNN 473
>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
Length = 469
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 140/260 (53%), Gaps = 21/260 (8%)
Query: 108 LRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK 165
+R + D +E V ++ + + P+ + T+VLSPYL G LS+R QC+ +Y+
Sbjct: 209 IRTQLRDFCRERVQDYHQWRDFPA---REGTSVLSPYLAIGALSAR---QCVARLYRESA 262
Query: 166 KHTSPPVSLV--GQLLWRDFFYTVAFGTPNFDRMKGN-RICKQIPWSNDDELLAAWREAR 222
+ V +L+WR+F+ + PN + + ++ W ND E W E
Sbjct: 263 MSALSEGAQVWLSELIWREFYQHLVAIEPNISKSRDFLEWGARLEWWNDSEKFQRWCEGN 322
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A NN
Sbjct: 323 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANN 381
Query: 283 GNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT P
Sbjct: 382 GGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-- 439
Query: 342 IQTRAKCIIGRDYPAPVVSH 361
+ YP P+V H
Sbjct: 440 ------AVNSVLYPPPLVDH 453
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 179/383 (46%), Gaps = 46/383 (12%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GI + + + H L A ++ GG+ + +G P +P +L S
Sbjct: 110 GISIDARIEHELEKRAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALESSIEA--- 166
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFR-----------------GGESEALKKLRESIS 113
E ++P+ +L K G E+L ++ GE A +KLR I
Sbjct: 167 ---EPLDIPSKLQLASKLPGSEKLESWKLLSTQPDWASNFADLCTPGEEGAQEKLRTFIE 223
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
D+ + +++ + P+ KPAT++LSP+L G +S + D + + KH P
Sbjct: 224 DR--LDGYKENRDYPA---KPATSMLSPHLALGEISPARIW----DATRGLSKHV-PAAD 273
Query: 174 LV---GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
+V ++ WR+F Y + P + W ++ AW TGYP +DA
Sbjct: 274 IVHFRKEIAWREFSYHLLAHFPRLATANWDDRFDGFEWRRAEKDFKAWSRGMTGYPIVDA 333
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS- 289
M QL ++GWMH+ R A FL + D+ V W G F L+D+D A N +W W++
Sbjct: 334 GMRQLWRYGWMHNRVRMIAASFLIK-DLMVDWRHGEAWFRDTLVDADPANNAASWQWVAG 392
Query: 290 ----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
S FF RI++PV G+K+DP+G+++R +P L+ + +YI+ P+ AP ++
Sbjct: 393 SGADASPFF----RIFNPVLQGEKFDPDGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDA 448
Query: 346 AKCIIGRDYPAPVVSHDSASKEC 368
A I+G YP PVV H A K
Sbjct: 449 ADVILGETYPEPVVDHAGARKRA 471
>gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118]
gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens
T118]
Length = 492
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 175/372 (47%), Gaps = 25/372 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGK----PPLTYQSFLKLAGQPLWASSPL 57
+V+ + GI + + H +F +I+ K G P + Q L
Sbjct: 119 RVRGALAHVGIVLHTCKDHVIFENREILSKTGTPYGVFTPYKNTWLATVTPQHLRHHDAT 178
Query: 58 PVSLSSLP-PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
PV+ + +P P G VPT+ +G++ +L G A +L E ++
Sbjct: 179 PVAQALVPRPEG-----LQQPVPTLAAIGFEKTNLSQLKIPTGASGGA--RLFEDFFER- 230
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ ++ + + P+ + L +L+FG +S R Q Q + + +G
Sbjct: 231 -MDSYHETRDLPAV---KGPSYLGVHLRFGTVSVR---QLAATALQRQIQGSRGAAVWLG 283
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND---DELLAAWREARTGYPWIDAIMV 233
+L+WRDF++++ P+ + I W + D L AW E RTGYP +DA M
Sbjct: 284 ELIWRDFYFSILANFPHVAQGAFKPEYDAIKWEHGKHADSLFQAWCEGRTGYPLVDAAMA 343
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
Q+ + G+MH+ R FL + D+ + W G F R L D D A NNG W W+S S
Sbjct: 344 QINQTGYMHNRLRMVAGSFLVK-DLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGC 402
Query: 294 FYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
Q Y RI++PV+ +K+D +G +IR +LP L +P + I+ PWTA +G+
Sbjct: 403 DAQPYFRIFNPVTQSEKFDADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQ 462
Query: 353 DYPAPVVSHDSA 364
+YPAP+V+H +A
Sbjct: 463 NYPAPIVAHAAA 474
>gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|405751816|ref|YP_006675281.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424713475|ref|YP_007014190.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|404221016|emb|CBY72379.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424012659|emb|CCO63199.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
Length = 467
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 137/268 (51%), Gaps = 12/268 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +L I K VA+++K + P T+ LS YL+ G +S R +Q L +
Sbjct: 194 GERAANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISIRTIWQSLQE 248
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ T + +L WRDF+ + PN + I W N+ E AW+
Sbjct: 249 T-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREYFKAWQ 303
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D A
Sbjct: 304 EGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQMLIDYDPA 362
Query: 280 INNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++P + +K+D G +IR ++ L ++P +YI++P
Sbjct: 363 SNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEKM 422
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASK 366
T Q ++G+DYP P+V H K
Sbjct: 423 SETEQKEHGLLLGKDYPFPIVDHKERRK 450
>gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 476
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 22/308 (7%)
Query: 74 EISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLK 133
+ E+ ++ Y G + + F GE AL++LR + +E V ++ + + P+
Sbjct: 180 QACEMSEIKPFDYSQQGLDSVL-FPAGEEAALQRLR--VFCREHVQDYAQQRDIPAV--- 233
Query: 134 PATTVLSPYLKFGCLSSRYFYQCLTDVY----QNVKKHTSPPVSLVGQLLWRDFFYTVAF 189
T+VLSPYL G LS R QCL + ++ S + +L+WR+F+ +
Sbjct: 234 DGTSVLSPYLAVGVLSPR---QCLNRLLAECPDTLEDGESGAFVWLNELVWREFYRHLLV 290
Query: 190 GTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHC 248
P R K + WS D E L AW++ TGYP +DA M QL GWMH+ R
Sbjct: 291 AHPKLCRHKPFIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRMI 350
Query: 249 VACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFG 307
VA FL + D+ ++W G F LID D A NNG W W + S + Y RI++P + G
Sbjct: 351 VASFLVK-DLLINWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQG 409
Query: 308 KKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE 367
+++D G++IR +LP L D+P I+ P + +C + DYP P+V H A K+
Sbjct: 410 ERFDKKGDFIRRWLPELADVPDSDIHHPHQWAMK-----QCRV-LDYPQPLVDHALARKQ 463
Query: 368 CKRKLGEA 375
+ +A
Sbjct: 464 TLQAFEDA 471
>gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175]
gi|405748953|ref|YP_006672419.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
gi|417316860|ref|ZP_12103492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|424822329|ref|ZP_18247342.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|404218153|emb|CBY69517.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
Length = 467
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 137/268 (51%), Gaps = 12/268 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +L I K VA+++K + P T+ LS YL+ G +S R +Q L +
Sbjct: 194 GERAANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISIRTIWQTLQE 248
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ T + +L WRDF+ + PN + I W N+ E AW+
Sbjct: 249 T-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREYFKAWQ 303
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D A
Sbjct: 304 EGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQMLIDYDPA 362
Query: 280 INNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++P + +K+D G +IR ++ L ++P +YI++P
Sbjct: 363 SNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEKM 422
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASK 366
T Q ++G+DYP P+V H K
Sbjct: 423 SETEQKEHGLLLGKDYPFPIVDHKERRK 450
>gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
H7858]
gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731355|ref|YP_006204851.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|405754672|ref|YP_006678136.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406703371|ref|YP_006753725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
gi|417314672|ref|ZP_12101366.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. H7858]
gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|384390113|gb|AFH79183.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|404223872|emb|CBY75234.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406360401|emb|CBY66674.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
Length = 467
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 137/268 (51%), Gaps = 12/268 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +L I K VA+++K + P T+ LS YL+ G +S R +Q L +
Sbjct: 194 GERAANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISIRTIWQTLQE 248
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ T + +L WRDF+ + PN + I W N+ E AW+
Sbjct: 249 T-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREYFKAWQ 303
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D A
Sbjct: 304 EGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQMLIDYDPA 362
Query: 280 INNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++P + +K+D G +IR ++ L ++P +YI++P
Sbjct: 363 SNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIRKYVKELANLPDKYIHQPEKM 422
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASK 366
T Q ++G+DYP P+V H K
Sbjct: 423 SETEQKEHGLLLGKDYPFPIVDHKERRK 450
>gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
Length = 534
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 165 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 223
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 224 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 278
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 279 -LGGYAAERDRPGIA---STSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 334
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 335 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 394
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 395 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 513
Query: 356 APVVSHDSASKECKRKLG 373
P+V+HD+A + G
Sbjct: 514 LPIVAHDAARRRALDAFG 531
>gi|449492091|ref|XP_004176864.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Taeniopygia
guttata]
Length = 488
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 185/367 (50%), Gaps = 17/367 (4%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK--LAGQPLWASSPLPVSLSSLPPVG 68
G+++ + TL++ D+ + + P Y F K +G + + + L L P
Sbjct: 131 GVKIQTFWGSTLYHRDDLPFRPIDRLPDVYTHFEKGLESGAKVRPTLRMADQLKPLAPG- 189
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISDKEWVANFEKPKG 126
E +PT+E+ G K + + F GGE++AL +L+ D VA++++ +
Sbjct: 190 ----LEEGSIPTMEDFGQKDPVDDPRTAFPCSGGETQALMRLQYYFWDTNLVASYKETRN 245
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYT 186
+T +P+L GC+S RY Y+ + Y+ + ++ +LLWRD+F
Sbjct: 246 GLVGM--DYSTKFAPWLALGCISPRYIYEQIQK-YERERTANESTYWVLFELLWRDYFRF 302
Query: 187 VA--FGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
VA +G F ++G + K IPW D +L + W+E +TG P++DA M +L G+M +
Sbjct: 303 VALKYGRRIFS-LRGLQ-SKDIPWKKDLQLFSCWQEGKTGVPFVDANMRELSATGFMSNR 360
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPV 304
R VA FLT+ D+ + W G + F+ LL+D D N GNWL+ + + NR ++ +
Sbjct: 361 GRQNVASFLTK-DLGLDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRDNRKFNMI 419
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
G YD NG+Y+R ++P L+ + I+ PW ++A +G YP PVV+
Sbjct: 420 KQGLDYDGNGDYVRLWVPELQGIKGADIHTPWALSSAALSQAGVTLGETYPQPVVTAPEW 479
Query: 365 SKECKRK 371
S+ R+
Sbjct: 480 SRHIHRR 486
>gi|422909456|ref|ZP_16944104.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|424658839|ref|ZP_18096090.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
gi|341635145|gb|EGS59869.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|408053914|gb|EKG88912.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
Length = 469
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGNTGYPIVDAAMRQLNQIGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|417555402|ref|ZP_12206471.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-81]
gi|417562323|ref|ZP_12213202.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC137]
gi|421199029|ref|ZP_15656194.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC109]
gi|421454809|ref|ZP_15904156.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-123]
gi|421631891|ref|ZP_16072554.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-13]
gi|421806039|ref|ZP_16241912.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-694]
gi|395524905|gb|EJG12994.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC137]
gi|395565925|gb|EJG27572.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC109]
gi|400212599|gb|EJO43558.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-123]
gi|400391819|gb|EJP58866.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-81]
gi|408710437|gb|EKL55663.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-13]
gi|410407513|gb|EKP59497.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-694]
Length = 480
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 192/387 (49%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQS-- 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P AT+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKVERDFPHI---QATSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F R LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMRHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V+ KE + K E +
Sbjct: 455 LGLNYPKPIVN----LKETRLKAIETF 477
>gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
52237]
gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
52237]
Length = 534
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 165 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 223
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 224 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 278
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 279 -LGGYAAERDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 334
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 335 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 394
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 395 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 513
Query: 356 APVVSHDSASKECKRKLG 373
P+V+HD+A + G
Sbjct: 514 LPIVAHDAARRRALDAFG 531
>gi|428226857|ref|YP_007110954.1| deoxyribodipyrimidine photo-lyase type I [Geitlerinema sp. PCC
7407]
gi|427986758|gb|AFY67902.1| deoxyribodipyrimidine photo-lyase type I [Geitlerinema sp. PCC
7407]
Length = 481
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 171/381 (44%), Gaps = 34/381 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
+V+ GI + + L P +I + N G P Y F K W P
Sbjct: 112 QVRHALKERGIGLHTSWDQLLHAPGEI-RTNAGDPYTVYTPFWKN-----WQKQP---KA 162
Query: 62 SSLPPVGDVGYFEISE-----------VPTVEELGYKGYGQEELSPFRGGESEALKKLRE 110
+ LP + DV SE +P+ ++LG+ G L+P + L+ E
Sbjct: 163 APLPTLSDVQGLSDSEREAATAAGAIALPSAQDLGFGWDGDLVLAPGEAAARDRLEAFCE 222
Query: 111 SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK--KHT 168
S S +E + ++ + P+ +P T+ LS LKFG + R + + + T
Sbjct: 223 S-STREGLWVYDDQRDFPA---EPGTSQLSAALKFGAIGIRTVWAAADAALSRSRSEEST 278
Query: 169 SPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWI 228
+ + +L WR+F+ + P R + PW N ++ AW E RTGYP +
Sbjct: 279 NNIRTWQQELAWREFYQHAMYFFPRLAEGPYRREWQDFPWENREDRFQAWCEGRTGYPIV 338
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M QL + GWMH+ R VA FL + D+ + W G F + L+D D + NNG W W
Sbjct: 339 DAAMRQLNEIGWMHNRCRMIVASFLVK-DLIIDWRWGEKYFMQKLVDGDLSANNGGWQWS 397
Query: 289 SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
+ S + RI++P S +KYDP+ YIR +LP LK + + PL R +C
Sbjct: 398 ASSGMDPKPLRIFNPASQAQKYDPDAVYIRQWLPELKSLDAADLVSGKILPL---VRDRC 454
Query: 349 IIGRDYPAPVVSHDSASKECK 369
YPAP+V H ++ K
Sbjct: 455 ----GYPAPIVDHKVQQQKFK 471
>gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
Length = 277
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 143/276 (51%), Gaps = 21/276 (7%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +KLR I D+ + +++ + P+ KPAT++LSP+L G +S + D
Sbjct: 5 GEEGAQEKLRTFIEDR--LDGYKENRDYPA---KPATSMLSPHLALGEISPARIW----D 55
Query: 160 VYQNVKKH--TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAA 217
+ + KH + V ++ WRDF Y + P + W + +E A
Sbjct: 56 ATRGLSKHLPAADIVHFRKEIAWRDFSYHLLAHFPRLATANWEDRFDRFEWGSAEEDFNA 115
Query: 218 WREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSD 277
W TGYP +DA M QL ++GWMH+ R A FL + D+ V W G F L+D+D
Sbjct: 116 WSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIK-DLMVDWRHGEAWFRDTLVDAD 174
Query: 278 WAINNGNWLWLS-----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
A N +W W++ S FF R+++PV G+K+DP+G+++R +P L+ + +YI
Sbjct: 175 PANNAASWQWVAGSGADASPFF----RVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYI 230
Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+ P+ AP ++ A I+G YP PVV H A K
Sbjct: 231 HRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRA 266
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 140/274 (51%), Gaps = 17/274 (6%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A ++L + D+ + +++ + P+ KPAT++LSP+L G +S +
Sbjct: 211 GEQGARERLSAFVEDE--LKGYKENRDYPA---KPATSMLSPHLALGEISPARIWDATRG 265
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ V + V ++ WR+F Y + F P N W NDD AWR
Sbjct: 266 LSNRVP--AADIVHFRKEIAWREFSYHLLFHFPRLASENWNDRFDGFKWRNDDGDFEAWR 323
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TGYP +DA M QL + GWMH+ R VA FL + D+ + W G F L+D+D A
Sbjct: 324 RGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIK-DLMIDWRDGEAWFRDTLVDADPA 382
Query: 280 INNGNWLWLS-----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYE 334
N +W W++ S FF RI++P+ G+ +DP+G+Y+R +P L+ + +YI+
Sbjct: 383 NNAASWQWVAGSGADASPFF----RIFNPMLQGETFDPDGDYVRAHVPELQRLGAKYIHR 438
Query: 335 PWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
P+ AP + A I+G+ YP P+V H SA
Sbjct: 439 PFEAPKSALDEAGIILGQTYPKPIVDHASARDRA 472
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 140/270 (51%), Gaps = 17/270 (6%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A ++L + D+ + +++ + P+ KPAT++LSP+L G +S +
Sbjct: 235 GEQGARERLSAFVEDE--LKGYKENRDYPA---KPATSMLSPHLALGEISPARIWDATRG 289
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ V + V ++ WR+F Y + F P N W NDD AWR
Sbjct: 290 LSNRVP--AADIVHFRKEIAWREFSYHLLFHFPRLASENWNDRFDGFKWRNDDGDFEAWR 347
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TGYP +DA M QL + GWMH+ R VA FL + D+ + W G F L+D+D A
Sbjct: 348 RGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIK-DLMIDWRDGEAWFRDTLVDADPA 406
Query: 280 INNGNWLWLS-----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYE 334
N +W W++ S FF RI++P+ G+ +DP+G+Y+R +P L+ + +YI+
Sbjct: 407 NNAASWQWVAGSGADASPFF----RIFNPMLQGETFDPDGDYVRAHVPELQRLGAKYIHR 462
Query: 335 PWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
P+ AP + A I+G+ YP P+V H SA
Sbjct: 463 PFEAPKSALDEAGIILGQTYPKPIVDHASA 492
>gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique
HTCC1062]
gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1062]
Length = 473
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 172/339 (50%), Gaps = 17/339 (5%)
Query: 29 IQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKG 88
+ K+ G P + F K Q + +P + + + + F+ S + E L K
Sbjct: 135 MTKDDGTPYKVFTPFWKKTEQHYISKAPSKL-IRVKSKIKKINIFKNS-ISIKEILPKKN 192
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
+ ++ + E EA K L+E I++K + ++ + P T+ LSP+LKFG +
Sbjct: 193 WHKKFEKYWDPSEKEAKKYLQELINNK--IEDYGDARDIPGV---NGTSKLSPFLKFGQI 247
Query: 149 SSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGN--RICKQI 206
++ D+ VKK + +L WR+F +++ P +KGN +
Sbjct: 248 HVETIWKKCQDI--KVKKIGYR--KYINELGWREFSHSLINYFPQM--LKGNLRKDFDNF 301
Query: 207 PWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGR 266
PW +D+ L AW+ TGYP +DA M +L + GWMH+ R VA FL + + +HW +G
Sbjct: 302 PWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVK-HLRIHWMEGE 360
Query: 267 DVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
F L+D + A N W W++ C + Y RI++P+ G+K+D +G Y + ++P LK
Sbjct: 361 KHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKDGIYTKKWVPELK 420
Query: 326 DMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+MP +++Y+PW Q + K I+G +YP P++ H A
Sbjct: 421 NMPNKFLYKPWELETKYQEQIKVIVGINYPKPIIDHVEA 459
>gi|126642518|ref|YP_001085502.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
[Acinetobacter baumannii ATCC 17978]
Length = 381
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 194/387 (50%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 18 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 76
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 77 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 132
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P+ AT+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 133 VCHYKVERDFPNI---QATSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 184
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 185 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDA 244
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 245 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 303
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 304 TGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 355
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V KE + K E +
Sbjct: 356 LGLNYPKPIVD----LKETRLKAIETF 378
>gi|428213303|ref|YP_007086447.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
gi|428001684|gb|AFY82527.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
Length = 486
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 22/304 (7%)
Query: 73 FEISEVPTVEELGYK--GYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
E +P + ELG + + + PF GGES + ++ + + + +++ + +
Sbjct: 184 IETGNLPNLTELGVEKVAIASKAVLPFTGGESAGIARMEDYFWTGDRLRTYKETR---NG 240
Query: 131 YLKPA-TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAF 189
L P ++ SP+L GCLS RY YQ + D Y+ + L+ +LLWRD+F +
Sbjct: 241 MLGPDYSSKFSPWLSLGCLSPRYIYQQVQD-YETQRIKNDSTYWLIFELLWRDYFRFIC- 298
Query: 190 GTPNFDRMKGNRICKQ-------IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
GN I +Q IPW D + W++ +TG+P +DA M +L G+M
Sbjct: 299 ------AKHGNAIFRQSGLQGVTIPWEEDWQKFTLWQQGKTGFPLVDANMRELAATGFMS 352
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYS 302
+ R VA FLT+ ++ ++W+ G + F+ LLID D N GNW + + + R ++
Sbjct: 353 NRGRQNVASFLTK-NLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFN 411
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
+ K YDP G+Y++H+LP L +P ++EPW Q R IG DYP PVV
Sbjct: 412 IIKQSKDYDPEGDYVKHWLPELAAVPAAKVHEPWKLLEVEQQRFGVKIGVDYPHPVVDLF 471
Query: 363 SASK 366
++K
Sbjct: 472 ESAK 475
>gi|384227735|ref|YP_005619480.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538675|gb|AEO08652.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 475
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 148/285 (51%), Gaps = 22/285 (7%)
Query: 97 FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC 156
F GE +A+ +L+ K + ++ + P +T++LSPYL G +SSR+
Sbjct: 203 FPIGEKKAIDRLKNFCIHK--IHDYSFKRNFP---FLNSTSMLSPYLSAGIISSRHCLMM 257
Query: 157 LTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRIC-KQIPWSNDDELL 215
L N + S Q+LWR+F+Y + G P + + K+I W N+ E
Sbjct: 258 LLKTKNNFSLNALVTSSWFNQILWREFYYHLLIGFPRISKYESLVTWEKKIIWMNNTEHF 317
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
AW++ TG+P IDA M QL K GWMH+ R V+ FL + ++ + W +G F LID
Sbjct: 318 NAWKKGNTGFPIIDAGMRQLNKLGWMHNRLRMIVSSFLVK-NLLIDWRQGEKYFMSHLID 376
Query: 276 SDWAINNGNWLW---LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
D A+NNG W W + C S Y R+++P++ K +D +G +I+ F+P LK++P YI
Sbjct: 377 GDLALNNGGWQWSASVGCDSV--PYIRVFNPLNQSKTFDISGAFIKKFIPELKNIPNHYI 434
Query: 333 YEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
++P W+ + DYPAP++++ + K+ +A
Sbjct: 435 HQPHIWSKEQNFKL--------DYPAPIINYSDSRKKSLLIFNQA 471
>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 485
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 2/227 (0%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T+ LSP+L+FG + ++ + + + + ++ WR+F YT+ + P
Sbjct: 239 TSRLSPHLRFGEIGPAQIWRAVRARLEAQQADEDSARVFLSEIAWREFSYTLLYYNPALA 298
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
N Q+ W DD AAW +TGYP +DA M +L GWMH+ R VA FLT+
Sbjct: 299 TENYNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTGWMHNRVRMIVASFLTK 358
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDPNG 314
+ + W++G F L+D+D A N +W W + S Y R+++P+S G+K+D +G
Sbjct: 359 -HLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFRVFNPISQGQKFDEDG 417
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
Y+RH+ P L +P +Y++ P+ A RA+ ++G DYP P++ H
Sbjct: 418 AYVRHWCPELAGLPDKYLHAPFEADAQTLKRARVMLGTDYPEPIIDH 464
>gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
Length = 481
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 20/290 (6%)
Query: 76 SEVPTVEELGYK--GYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLK 133
+E+PT+E +G+ G+ +L G + + +E ++ + +F KG PS
Sbjct: 186 TEMPTLESMGFARTNLGEMKLPTGMSGGQQLFAEFQERMARYKDARDFPAVKG-PS---- 240
Query: 134 PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN 193
LS +L+FG +S R+ + ++H + + + +L+WRDF++ V P
Sbjct: 241 ----YLSVHLRFGTVSIRHLARTAW------QQHNAGAETWLNELIWRDFYFQVLHHHPQ 290
Query: 194 FDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ ++ I + N L AW E RTGYP +DA M QL + G+MH+ R A F
Sbjct: 291 VAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTASF 350
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + D+ + W G F LID D A NNG W W + + Q + RI++PV+ +K+D
Sbjct: 351 LVK-DLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFD 409
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
G +IR ++P L ++ I+ PW P Q +IG+DYPAPVV H
Sbjct: 410 AQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEH 459
>gi|448688386|ref|ZP_21694219.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
gi|445779447|gb|EMA30377.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
Length = 465
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 146/299 (48%), Gaps = 15/299 (5%)
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKP 124
P ++ + +PT+ +LG++ + E G EA L + + E V +E+
Sbjct: 162 PSTDELAEVDGDALPTLADLGFE---EPEADVPPAGTDEARALLNDFLD--ENVYEYEER 216
Query: 125 KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDF 183
+ P+ T+ LS +LKFG + R Y D + H QL WR+F
Sbjct: 217 RDFPA---DECTSRLSAHLKFGTIGIREVYDRTQDAKEGAGGNHHESVREFQSQLAWREF 273
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+ V F P+ I W ND+ELL AW++ TGYP +DA M QLR +MH+
Sbjct: 274 YTQVLFAHPHVVTSNYKSYENSIEWENDEELLQAWKDGETGYPIVDAGMRQLRAEAYMHN 333
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYS 302
R VA FLT+ D+ + W G + F L+D D A +NG W W + + Q Y RI++
Sbjct: 334 RVRMIVASFLTK-DLLIDWRYGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFN 392
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
P++ G+ YDP+ YI+ ++P L+D E I++ W Q R +YP PVV H
Sbjct: 393 PMTQGEDYDPDAEYIKKYVPELRDAASEVIHD-WNECSLTQRRNAAP---EYPDPVVDH 447
>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
Length = 474
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 175/370 (47%), Gaps = 34/370 (9%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GI V++ L P +I K+G P Y F K W +++L V +
Sbjct: 121 GIAVYNYWDQLLHAPGEIFTKSG-NPYSVYTPFWKN-----WQGQSKAEPVATLTRVESL 174
Query: 71 GYFE--------ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
E ++++P+ +LGY + E L P GE A +++ E D+ + ++
Sbjct: 175 TEIEQDNALAAGVTDLPSAIDLGYV-WENELLVP--PGEKVA-QEILEEFCDRT-IGDYH 229
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG---QLL 179
+ + P T+ LS LKFG + R +Q + Y N+ + S+ +L
Sbjct: 230 EQRNFPGV---DGTSKLSAALKFGVIGIRRVWQAAQNAY-NLSRSDEARQSIQTWQQELA 285
Query: 180 WRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
WR+F+ + P + + + PW N+ E AW E +TGYP +DA M QL + G
Sbjct: 286 WREFYQHAMYFFPELAQGPYRQKFQDFPWDNNPEFFQAWCEGKTGYPIVDAAMRQLNQTG 345
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
WMH+ R VA FLT+ D+ ++W+ G F + L D D + NNG W W + S + R
Sbjct: 346 WMHNRCRMIVASFLTK-DLIINWQWGEKYFMQRLSDGDLSANNGGWQWSASSGMDPKPLR 404
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
I++P S KK+DP+G YIR +LP L + EY+ + + R C YPAP+V
Sbjct: 405 IFNPASQAKKFDPDGEYIREWLPELSSVDTEYVV---SGKIPESGREMC----GYPAPIV 457
Query: 360 SHDSASKECK 369
H+ + K
Sbjct: 458 DHNQQQRRFK 467
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 179/383 (46%), Gaps = 26/383 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
V+ GI V + L P +I N G P Y F K + + P P
Sbjct: 113 VRSALKEQGIAVETFWDQLLHFPGEIC-SNTGNPYTVYTPFWKNWIRQT-KAEPAPGLEQ 170
Query: 59 -VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+SL+ E++ +PT+++LG L P GES A +L E SD+
Sbjct: 171 AISLTEAEQERAKNAGEVA-LPTLKDLGLSWDNPLMLEP---GESAARSQL-EEFSDRT- 224
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK-HTSPPVSLVG 176
+ ++++ + P+ P T++LS LKFG + R + + + + T V
Sbjct: 225 IYDYDEQRNFPAV---PGTSLLSAALKFGAIGIRTVWNATLNAAEQCRSDETRKGVQTWQ 281
Query: 177 Q-LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
Q L WR+F+ + P K PW N++EL AW + +TGYP +DA M QL
Sbjct: 282 QELAWREFYQQALYHFPELATGPYRDTWKDFPWENNEELFHAWCQGQTGYPIVDAAMRQL 341
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFY 295
+ GWMH+ R VA FLT+ D+ ++W+ G F + L D D A NNG W W + S
Sbjct: 342 NETGWMHNRCRMIVASFLTK-DLIINWQWGEQYFMQKLYDGDLAANNGGWQWSASSGMDP 400
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
+ RI++P + +K+DP G+YIR ++ L+ M E + PL R C YP
Sbjct: 401 KPLRIFNPTTQTQKFDPEGDYIREWVSELRSMETEALISGKILPL---ERESC----GYP 453
Query: 356 APVVSHDSASKECKRKLGEAYAL 378
AP+V+H+ + K + AL
Sbjct: 454 APIVNHNEQQRRFKALYQQQKAL 476
>gi|423205555|ref|ZP_17192111.1| hypothetical protein HMPREF1168_01746 [Aeromonas veronii AMC34]
gi|404623830|gb|EKB20679.1| hypothetical protein HMPREF1168_01746 [Aeromonas veronii AMC34]
Length = 473
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 150/276 (54%), Gaps = 32/276 (11%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE EAL++L +I ++ V ++ + + P+ T+VLSPYL G +S R QC+
Sbjct: 206 GEVEALRRL--NIFLEQAVLDYGETRDFPAIA---GTSVLSPYLAAGIISPR---QCVAA 257
Query: 160 VYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND 211
+ Q + + P + +L+WR+F+ + P + NR K +PWS D
Sbjct: 258 LQQRLGYRPQSKAQPGFVWLNELVWREFYRHLLVLIPT---LSMNRPFKPETADLPWSWD 314
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ AAW E RTGYP +DA M L GWMH+ R VA FLT+ D+ +HW G D F
Sbjct: 315 PDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 272 LLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
LID D A NNG W W + + + Y R+++P + G+++DP G +IR ++ L D+P
Sbjct: 374 RLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEFIRIWVTELADIPAA 433
Query: 331 YIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
Y+++P W L ++ R +DYPAP+V H A
Sbjct: 434 YVHQPHDW---LRLKGR------QDYPAPMVDHAVA 460
>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293624|ref|ZP_21483728.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445569955|gb|ELY24522.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 484
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 165/361 (45%), Gaps = 30/361 (8%)
Query: 17 PVSHTLFNPADIIQKNGGKPPLTYQSFLKL-------------AGQPLWASSPLPVSLSS 63
PV +F+P I N G Y F K L ++ L +
Sbjct: 120 PVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPYPEPDADDLVDAATLESAAED 179
Query: 64 LPPVGDVGY-FEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L GD + + +PT+ +LG++ + S G A ++L +D + +
Sbjct: 180 LTN-GDAEFDIAVGGLPTISDLGFE---EPSASVQPAGTEAARERLSAFCADA--IYRYA 233
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS-LVGQLLWR 181
+ P+ + AT+ LS LKFG + R Y + V V QL WR
Sbjct: 234 DDRDYPT---RDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWR 290
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+F+ V G PN + I W +DDE LAAW+ TGYP +DA M QLR+ +M
Sbjct: 291 EFYAHVLRGHPNVVTENYKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYM 350
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRI 300
H+ R VA FLT+ D+ W G F L D D A +NG W W + + Q Y RI
Sbjct: 351 HNRVRMIVASFLTK-DLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRI 409
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++P++ G++YDP+G YI+ ++P L D+ I+E W LT R + + DYP P+V
Sbjct: 410 FNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE-WH-ELTDLERER--LAPDYPEPIVD 465
Query: 361 H 361
H
Sbjct: 466 H 466
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 172/353 (48%), Gaps = 13/353 (3%)
Query: 21 TLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPT 80
TL+ P D+ + P + F K SP S +LP +G + + E+PT
Sbjct: 137 TLYAPDDL-PFGTDEIPEVFTQFRKRVESQSDVRSPF-ASPKALPALGAIA---LGELPT 191
Query: 81 VEELGYKGYGQEE--LSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTV 138
+ +LG + ++ + FRGGE+ L +L+ + ++ +++ + ++
Sbjct: 192 LADLGLEPPSPDKRGVLAFRGGETAGLARLQHYFWQSDRLSVYKETRN--GMLGADYSSK 249
Query: 139 LSPYLKFGCLSSRYFY-QCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
SP+L GCLS RY + Q LT Y++ + L+ +LLWRD+F + N
Sbjct: 250 FSPWLALGCLSPRYIHDQVLT--YEDDRTANDSTYWLIFELLWRDYFRFICLKHGNQIFR 307
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
+IPW D W TG+P +DA M +L G+M + R VA FLT+ +
Sbjct: 308 AAGLQGVEIPWKEDWPRFELWTRGETGFPLVDANMRELAATGFMSNRGRQNVASFLTK-N 366
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
+ +HW G + F+ LLID D N GNW + + + R ++ + K YDP+G Y+
Sbjct: 367 LGIHWHMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFNILKQSKDYDPDGRYV 426
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKR 370
+H+LP L D+P ++EPW Q R +G DYP PVV +++E ++
Sbjct: 427 KHWLPELADVPGAKVHEPWKLQPVEQKRFNLRLGVDYPNPVVDLFKSAQENEK 479
>gi|421138201|ref|ZP_15598271.1| DNA photolyase, FAD-binding protein [Pseudomonas fluorescens
BBc6R8]
gi|404510624|gb|EKA24524.1| DNA photolyase, FAD-binding protein [Pseudomonas fluorescens
BBc6R8]
Length = 481
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 175/356 (49%), Gaps = 29/356 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GI + + F P ++ K G + + F K+ L + P L + P
Sbjct: 121 GITFHTYLDQLFFQPGSVLTKTGTYFQV-FSQFRKVCYSRLHGALP---RLVATPKAQAP 176
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
+ EVP E G+ + + + GE+EA ++L + +D + ++ ++ + P+
Sbjct: 177 LTLKSDEVPDHVE-GFATPSEALRALWPAGEAEARRRL-DQFADAQ-ISYYKDERDFPA- 232
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFYT 186
KP T+ LS YL G +S R QCL Q+ + ++ + +LLWR+F+
Sbjct: 233 --KPGTSQLSAYLAAGVVSPR---QCLHAALQSNQGEFESGDIGAITWINELLWREFYKH 287
Query: 187 VAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ G P R + R + + W N E L AW+EARTG P IDA M QL + GWMH+
Sbjct: 288 ILVGYPRVSRHRAFRPETEAVAWRNSPEDLKAWQEARTGLPIIDAAMRQLLETGWMHNRL 347
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPV 304
R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI+SP+
Sbjct: 348 RMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPL 406
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDYPAPVV 359
S +K+D G +I+H+LP L + K+ ++ P + G DYP P+V
Sbjct: 407 SQSEKFDGEGVFIKHWLPQLAALNKKEVHNP--------DAVGGLFGVADYPRPIV 454
>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
Length = 470
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 155/318 (48%), Gaps = 17/318 (5%)
Query: 52 WASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRES 111
W ++ P G + E++ +PT+EE+G+ EL + G S A K L +
Sbjct: 158 WLKRLTTADYAAWPCDGRLAGQELAGIPTLEEIGFTPTDLAELG-IQPGMSGA-KGLWDD 215
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
S ++ + + + P+ + LS +L+FG +S R V Q +
Sbjct: 216 FS-RDRIERYGSLRDFPAV---KGVSYLSVHLRFGTISIRQL------VRQALAHQADTW 265
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
+S +L+WRDF++ + P+ I W++ E AAW E TGYP +DA
Sbjct: 266 LS---ELIWRDFYFMILDHFPHVAGHAFKPEYDAIQWASRPEAFAAWCEGCTGYPLVDAA 322
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M QL GWMH+ R VA FLT+ D+ + W G F L D D + NNG W W S S
Sbjct: 323 MRQLNFSGWMHNRLRMVVASFLTK-DLGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSS 381
Query: 292 SFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
Q Y RI++PV+ +K+D G +IR ++P L + +YI+ PW Q +I
Sbjct: 382 GCDAQPYFRIFNPVTQSEKFDAEGKFIRRYVPELAKVHDKYIHAPWKMGRIEQEALGVVI 441
Query: 351 GRDYPAPVVSHDSASKEC 368
GRDYP+P+V H +A E
Sbjct: 442 GRDYPSPIVDHATARDET 459
>gi|399008562|ref|ZP_10711032.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM17]
gi|398115998|gb|EJM05769.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM17]
Length = 481
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 179/366 (48%), Gaps = 29/366 (7%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
M V + G+ S + LF P ++ ++GG + + F K+ L S LP
Sbjct: 111 MAVASLLKSQGVGFHSYLDQLLFRPGSVLTRSGGYFQV-FSQFRKVCYNRL--HSALPPQ 167
Query: 61 LSSLPPVGDVGYFEISEVP-TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVA 119
L++ P + +P VE G + L P GE+ A ++L + +
Sbjct: 168 LAA-PRAQAALRIKADALPWQVEGFPTPGPHLQALWP--AGETAAQQRLARFAETQ--LD 222
Query: 120 NFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK---KHTSP-PVSLV 175
+++ + P+ +P T+ LSPYL G LS R QCL QN + SP V+ +
Sbjct: 223 HYQAERDLPA---RPGTSQLSPYLAAGVLSPR---QCLHAALQNNRGEFASGSPGAVTWI 276
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+LLWR+F+ + G P R + R + + W + E LAA ++ARTG P IDA M Q
Sbjct: 277 NELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRDAPEELAACQQARTGLPIIDAAMRQ 336
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SF 293
L + GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 337 LLETGWMHNRLRMIVAMFLTK-NLLIDWRQGERFFMRHLIDGDLAANNGGWQWSSSTGTD 395
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y RI++P+S +++D G +I+H+LP L + ++ I+ P D
Sbjct: 396 SAPYFRIFNPLSQSQRFDSQGTFIKHWLPELAGLSEKDIHNP-------AAMGGLFGVAD 448
Query: 354 YPAPVV 359
YP P+V
Sbjct: 449 YPPPMV 454
>gi|395794837|ref|ZP_10474153.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. Ag1]
gi|395340998|gb|EJF72823.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. Ag1]
Length = 481
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 175/356 (49%), Gaps = 29/356 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
GI + + F P ++ K G + + F K+ L + P L + P
Sbjct: 121 GITFHTYLDQLFFQPGSVLTKTGTYFQV-FSQFRKVCYSRLHGALP---RLVATPKAQAQ 176
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
+ EVP E G+ + + + GE+EA ++L + +D + ++ ++ + P+
Sbjct: 177 LKLKSDEVPDHVE-GFATPSEALRALWPAGEAEARRRL-DQFADAQ-ISYYKDERDFPA- 232
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFYT 186
KP T+ LS YL G +S R QCL Q+ + ++ + +LLWR+F+
Sbjct: 233 --KPGTSQLSAYLAAGVVSPR---QCLHAALQSNQGEFESGDIGTITWINELLWREFYKH 287
Query: 187 VAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+ G P R + R + + W N E L AW+EARTG P IDA M QL + GWMH+
Sbjct: 288 ILVGYPRVSRHRAFRPETEAVAWRNSPEDLKAWQEARTGLPIIDAAMRQLLETGWMHNRL 347
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPV 304
R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI+SP+
Sbjct: 348 RMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPL 406
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDYPAPVV 359
S +K+D G +I+H+LP L + K+ ++ P + G DYP P+V
Sbjct: 407 SQSEKFDGEGVFIKHWLPQLAALNKKEVHNP--------DAVGGLFGVADYPRPIV 454
>gi|418406735|ref|ZP_12980054.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens 5A]
gi|358007228|gb|EHJ99551.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens 5A]
Length = 479
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 181/373 (48%), Gaps = 24/373 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL--AGQPLWASSPLPVS 60
+K+ G+ V S H L P+ + K+GG P Y F + G+ + P S
Sbjct: 113 LKEALGDDGLTVRSFAGHLLHEPSRVQTKSGG-PYRVYTPFWRALEGGEEPHTPADAPQS 171
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
L + + ++ V+ +G+ E +P GE+ A +KL + I +
Sbjct: 172 LKAPETWPKSEKLDDWKLLPVKPDWARGF-SEIWTP---GENAAREKLDDFIDGA--LKG 225
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+ + P+ K AT++L+P+L G +S + + +++ ++ +L+W
Sbjct: 226 YEEGRDFPA---KDATSLLAPHLALGEISPAAVWHATKGLSRHIA--SNDISRFRKELVW 280
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+F Y + F P D N W +DD AW TGYP +DA M QL K G
Sbjct: 281 REFCYHLLFHFPELDEKNWNDSFDAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKHGT 340
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CSSFFY 295
MH+ R VA FL + + + W KG F L+D+D A N NW W++ S FF
Sbjct: 341 MHNRVRMIVASFLIK-HLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFF- 398
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
RI++P+ G+K+D G+Y+R F+P L+ + ++YI++P+ AP + +A +G+ YP
Sbjct: 399 ---RIFNPILQGEKFDAEGDYVRRFVPELEKLERKYIHKPFEAPKEVLKKAGIELGKTYP 455
Query: 356 APVVSHDSASKEC 368
P+V H A +
Sbjct: 456 LPIVDHGKARERA 468
>gi|325273235|ref|ZP_08139517.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
gi|324101641|gb|EGB99205.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
Length = 473
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 177/367 (48%), Gaps = 31/367 (8%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP-VG 68
A ++ S + LF P I+ ++G +Q F + L L SL +L V
Sbjct: 120 ASVQAHSYLDQLLFRPGTILTRSGD----YFQVFSQFKKTCL---EHLHRSLPALARRVK 172
Query: 69 DVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
+I P +++ G++ + + GE+ A ++L + + E + ++ K +
Sbjct: 173 RQAALKIHSDPIPQDIDGFEKTPRALREHWPAGEAHAQQRLSQFLD--ETIDDYLKTRDL 230
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDF 183
P+ P T+ LSPYL G +S R QCL K ++ + V +LLWR+F
Sbjct: 231 PAM---PGTSQLSPYLAAGVISPR---QCLHGALAANKGEFDSGSTGVQTWVNELLWREF 284
Query: 184 FYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
+ + G P R + R + +PW + L AW + RTG+P IDA M QL GWMH
Sbjct: 285 YKHILTGYPQVSRHRAFRSHTEALPWRDAPGDLEAWEQGRTGFPIIDAAMRQLLHTGWMH 344
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIY 301
+ R VA FL++ ++ + W KG F R LID D A NNG W W S + Y RI+
Sbjct: 345 NRLRMIVAMFLSK-NLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIF 403
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+PVS +++DP G +IRH+LP L+D+ ++ I+ P + G Y P+V
Sbjct: 404 NPVSQSQRFDPEGRFIRHWLPELRDIDEKTIHGPMKS-------TDLFAGNSYHNPIVDL 456
Query: 362 DSASKEC 368
S+ +
Sbjct: 457 GSSRQRA 463
>gi|421499090|ref|ZP_15946150.1| deoxyribodipyrimidine photolyase [Aeromonas media WS]
gi|407181883|gb|EKE55880.1| deoxyribodipyrimidine photolyase [Aeromonas media WS]
Length = 474
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 155/290 (53%), Gaps = 33/290 (11%)
Query: 87 KGYGQEELSP-FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKF 145
+G G+ L P + GE+EAL++L + ++ V ++ + + P+ T++LSPYL
Sbjct: 192 EGLGELTLDPRWPVGEAEALRRLHAFL--EQGVLDYGETRDFPAL---AGTSILSPYLAA 246
Query: 146 GCLSSRYFYQCLTDVYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNR 201
G +S R QC+ + Q + + P + +L+WR+F+ + P + NR
Sbjct: 247 GIVSPR---QCVAALQQRLGARPQSKAQPGFVWLNELIWREFYRHLLVLIPT---LSMNR 300
Query: 202 ICK----QIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
K +PWS D + AAW RTGYP +DA M L GWMH+ R VA FLT+ D
Sbjct: 301 PFKPETVALPWSWDPDAFAAWCAGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-D 359
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNY 316
+ +HW G D F LID D A NNG W W + + Y R+++P + G+++DP G +
Sbjct: 360 LHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419
Query: 317 IRHFLPVLKDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
IR ++ L D+P Y+++P W L ++ R +DYPAP+V H A
Sbjct: 420 IRTWVTELADVPAAYVHQPHDW---LRLKGR------QDYPAPMVDHAVA 460
>gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 476
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 154/297 (51%), Gaps = 32/297 (10%)
Query: 78 VPTVEELGYKGYGQEELSPF----------RGGESEALKKLRESISDKEWVANFEKPKGD 127
+PT++ + + Q+ SPF + +E ++ LRE K V + + +
Sbjct: 178 LPTLDNTRLRLFSQD--SPFSYPRVSSNNYKVETTEVIQALREFEEKK--VKLYAENRDY 233
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV-YQNVKKHTSPPVSLVGQLLWRDFFYT 186
PS AT++LSPYL G LS R QC+ V YQ + +L+WR+F+
Sbjct: 234 PSV---DATSILSPYLAVGILSIR---QCMARVMYQQQLPLSGGREVWQSELIWREFYQH 287
Query: 187 VAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLA 245
+A+ P + + N + + W N L AW+ +TGYP +DA M QL + GWMH+
Sbjct: 288 LAYFEPKLSKGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDAAMKQLNETGWMHNRL 347
Query: 246 RHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPV 304
R VA FL + D+ + W G F L+D D+ NNG W W S + Q Y RI++P+
Sbjct: 348 RMIVASFLIK-DLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSSTGCDGQPYFRIFNPI 406
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+ G+++DP+G +I +LP L ++PK+++++PW Q + YPAP+V H
Sbjct: 407 TQGERFDPDGRFIIRWLPQLAEVPKKFLHQPWKWSRASQLK--------YPAPIVDH 455
>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris HaA2]
Length = 487
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 11/247 (4%)
Query: 133 KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP 192
+ AT++LSP+L+FG +S R + + + +L WR+F + P
Sbjct: 242 RDATSLLSPHLRFGEISPRQLWYAARFAAAKRPAIAADIDKFLSELGWREFCRHLLHDHP 301
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ PW+ DD LAAW+ RTGYP +DA M QL G MH+ R VA F
Sbjct: 302 DLAERNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRMVVASF 361
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYD 311
L + + + W G + F L+D+D N GNW W++ S + Y R+++P+ G+K+D
Sbjct: 362 LVK-HLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQGEKFD 420
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRK 371
P G+Y+R ++P + +P ++I++PWTA L + A +G +YPAP+V H K
Sbjct: 421 PAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDH---------K 471
Query: 372 LGEAYAL 378
+G A AL
Sbjct: 472 VGRARAL 478
>gi|427705816|ref|YP_007048193.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
gi|427358321|gb|AFY41043.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
Length = 479
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 174/375 (46%), Gaps = 43/375 (11%)
Query: 3 VKDYASTAGIEVFSPV-SHTLFNPADIIQKNGGKPPLT-YQSFLKLAGQPLWASSPLPVS 60
+ D GI+ S TL +PA+I + G P T Y F K W S P
Sbjct: 113 IIDALKAKGIQFLSENWDQTLHSPAEI--RTGSNTPYTVYTPFWKN-----WTSKPKAPP 165
Query: 61 LSSLPPVGDV--GYFEISE------VPTVEELGYKGYGQEELSPFRGGESEALKKLRE-- 110
+++L V + EI++ +PT ++LG+ LSP GE+ A +L E
Sbjct: 166 VATLQTVEGLTPAEQEIAQNAGAIPLPTAKDLGFIWDSDLILSP---GEASAQARLAEFT 222
Query: 111 --SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH- 167
+I++ + NF G T+ LS LKFG + R +Q +N +
Sbjct: 223 YKTITEYQEQRNFPATDG---------TSQLSAALKFGAIGIRTVWQATVAAQENSRSEE 273
Query: 168 -TSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYP 226
T+ + +L WR+F+ + P K PW +D AW E +TGYP
Sbjct: 274 TTTSIRTWQQELAWREFYQHAMYSFPELAEGAYRDAFKNFPWETNDAHFQAWCEGKTGYP 333
Query: 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWL 286
+DA M QL + GWMH+ R VA FLT+ D+ + + G F + LID D + NNG W
Sbjct: 334 IVDAAMRQLNQSGWMHNRCRMIVASFLTK-DLLISPQLGEKYFMQKLIDGDLSANNGGWQ 392
Query: 287 WLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRA 346
W + S + RI++P S +K+DP+G YIR +LP L+ + EY+ PL + RA
Sbjct: 393 WSASSGMDPKPLRIFNPASQTQKFDPDGEYIRRWLPELRSIDNEYLVTGKITPL--ERRA 450
Query: 347 KCIIGRDYPAPVVSH 361
YP P+V H
Sbjct: 451 VS-----YPEPIVDH 460
>gi|393775732|ref|ZP_10364042.1| deoxyribodipyrimidine photo-lyase [Ralstonia sp. PBA]
gi|392717262|gb|EIZ04826.1| deoxyribodipyrimidine photo-lyase [Ralstonia sp. PBA]
Length = 533
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 146/305 (47%), Gaps = 37/305 (12%)
Query: 78 VPTVEELGYKGYGQEE-LSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPAT 136
+PT+ +LG+ + L+P L + D +F +G
Sbjct: 217 MPTLAQLGFDAAPETPPLAPGSAAAEALLDDFLARLDDYHVRRDFPAVRG---------P 267
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYT-------VAF 189
+ LS +L+FG +S R C +Q + + + + +L+WR+F+ VA
Sbjct: 268 SYLSAHLRFGTVSIRTLAAC---AHQRMLAGSRGAETWLSELIWREFYMMILAHHPRVAA 324
Query: 190 G---TPNFDRMKGNRICKQIPWSND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
G P +DR++ W+ +E AAW RTGYP +DA M+QL G+MH+
Sbjct: 325 GESFKPEYDRIR---------WAEGTAAEEAFAAWCAGRTGYPLVDAAMLQLNTTGYMHN 375
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYS 302
R A FL + D+ + W +G F L D D+A NNG W W S S Q Y RI++
Sbjct: 376 RLRMVTASFLCK-DLGIDWRRGEAYFAARLTDHDFAANNGGWQWASSSGCDAQPYFRIFN 434
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHD 362
PV+ ++DP G +IR +LP L +P I+ PW A T+ A +G+DYP P+V H
Sbjct: 435 PVTQSTRFDPQGKFIRRYLPQLAKLPDRDIHAPWAASATVLAEAGVKLGKDYPYPLVDHA 494
Query: 363 SASKE 367
A ++
Sbjct: 495 EARQQ 499
>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357828|ref|ZP_12960518.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689067|gb|EHI53615.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 473
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 149/292 (51%), Gaps = 23/292 (7%)
Query: 80 TVEELGYKGYGQEELSP-FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTV 138
T E Y G+ P + GE+EA ++L + V ++E+ + P+ + T++
Sbjct: 185 TEREWSYGALGEVTPDPRWPVGEAEAQRRLHAFLEPA--VLDYEETRDFPA---QAGTSI 239
Query: 139 LSPYLKFGCLSSRYFYQCLTDVYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
LSPYL G +S R QC+ + Q + + P + +L+WR+F+ + P
Sbjct: 240 LSPYLAAGIISPR---QCVGVLQQRLGHRPQSKAQPGFVWLNELVWREFYRHLLVLVPTL 296
Query: 195 D-RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253
+ +PWS D AAW E RTGYP +DA M L GWMH+ R VA FL
Sbjct: 297 SMNLPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRCLHATGWMHNRLRMIVASFL 356
Query: 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDP 312
T+ D+ +HW G D F LID D A NNG W W + + + Y R+++P + G+++DP
Sbjct: 357 TK-DLHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDP 415
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
G++IR ++ L D+P Y+++P + GR YPAP+V H A
Sbjct: 416 QGDFIRTWVTELADIPAAYVHQP-------HDWLRLKGGRGYPAPMVDHALA 460
>gi|424924871|ref|ZP_18348232.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens R124]
gi|404306031|gb|EJZ59993.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens R124]
Length = 481
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 175/360 (48%), Gaps = 31/360 (8%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GI S + LF P ++ K + + F K+ + L S P +L P G
Sbjct: 119 TKGIAFHSYLDQLLFKPGTVLTKTDTYFQV-FSQFRKVCYERLHRSMP---ALVKTP--G 172
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPF-RGGESEALKKLRESISDKEWVANFEKPKGD 127
I P + E L GE EA +L ++ +D + + ++ +
Sbjct: 173 KQAKLNIDSDPVPAAVAGFATPSESLRALWPAGEQEARHRL-DTFADAQ-IDYYQSERDF 230
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDF 183
P+ KP T+ LSPYL G +S R QCL Q+ + V+ + +LLWR+F
Sbjct: 231 PA---KPGTSQLSPYLAAGVISPR---QCLQAALQSNQGEFDSGKVGAVTWINELLWREF 284
Query: 184 FYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
+ + G P R + R + + W + + LAAW+EARTG P IDA M QL + GWMH
Sbjct: 285 YKHILVGYPRVSRHRAFRPETEALAWRDAPDDLAAWQEARTGLPIIDAAMRQLLETGWMH 344
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIY 301
+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI+
Sbjct: 345 NRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIF 403
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDYPAPVVS 360
+P+S +K+D G +I+H+LP L + K+ ++ P + G +YP+P+V+
Sbjct: 404 NPISQSEKFDSEGLFIKHWLPELAGLNKKEVHNP--------ASVGGLFGVANYPSPIVN 455
>gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
Length = 481
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 179/369 (48%), Gaps = 41/369 (11%)
Query: 8 STAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQ----SFLKLAGQPLWASSPLPVSLSS 63
+ AG+ V +L P + G+ + +F+K +S P PV+
Sbjct: 120 ALAGVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPAPVTRQQ 179
Query: 64 LPPVGDVGYFEISEVPTVEELGYKGYGQEEL-SPFRGGESEALKKLRESISDKEWVANFE 122
GDV T+ L Y Q E+ + F GE+ A+++LR+ +E VA +
Sbjct: 180 ----GDV---------TLAPLAPFDYPQAEVHADFPVGEAAAVQRLRQFC--REQVAFYH 224
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP----VSLVGQL 178
+ P+ +PAT+ LSPYL G LS R QC + S P + +L
Sbjct: 225 ALRDLPA---RPATSKLSPYLALGILSPR---QCFNRLRMEHPDWLSQPEGGAFTWFNEL 278
Query: 179 LWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
+WR+F+ + +P+ R + +++ W + + LAAW+ TGYP +DA M QL +
Sbjct: 279 VWREFYRHLLVFSPSLCRHQPFIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQ 338
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQ 296
GWMH+ R A FL + D+ + W +G F L+D D A NNG W W S +
Sbjct: 339 TGWMHNRLRMICASFLVK-DLLIDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAP 397
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR-DYP 355
Y RI++P + G+++DP+G +IRH++P L +P + +++P A C R DYP
Sbjct: 398 YFRIFNPTTQGERFDPDGEFIRHWIPELAQIPGKAVHQP-------HDWAACQHRRIDYP 450
Query: 356 APVVSHDSA 364
AP+V H A
Sbjct: 451 APIVDHKQA 459
>gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
Length = 467
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 166/343 (48%), Gaps = 32/343 (9%)
Query: 23 FNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVE 82
P ++ K G P T S K A W + P P+ + P VP E
Sbjct: 135 IKPLGLLTKTGN--PYTVFSPFKRAWIERWRADPAPIYPAPEPRRCSAA------VPGSE 186
Query: 83 ELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPY 142
L ++ P GE A+ +L D+ + +++ + P+ +P T+ LSPY
Sbjct: 187 LLASDKQAMDQFWP--AGEDAAMNRLAHFCEDR--IDHYKAKRDLPA---EPGTSELSPY 239
Query: 143 LKFGCLSSRYFYQCLTDVYQ----NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMK 198
L G +S R CL + ++ + P + + +L+WRDF+ + P +
Sbjct: 240 LAAGVISPRV---CLDAAIRANRGDIHEGRQGPDTWISELIWRDFYIHILDTYPRVSMNR 296
Query: 199 GNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
R+ ++IPW N E AAW E RTGYP +DA M QL + GWMH+ R VA FLT+
Sbjct: 297 CFRVEGEKIPWRNAPEDFAAWCEGRTGYPIVDAAMRQLVQTGWMHNRLRMLVAMFLTK-Q 355
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNY 316
+ + W +G F + LID D NNG W W S + Y RI++P++ +K+D +G +
Sbjct: 356 LLIDWREGERFFMQHLIDGDLGANNGGWQWAASTGTDAAPYFRIFNPITQSQKFDASGAF 415
Query: 317 IRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
IR F+P L+++ + I+ P APL Q+ A YP PVV
Sbjct: 416 IRRFVPELRELSDKDIHMP--APLMRQSLASA-----YPEPVV 451
>gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
Length = 469
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 142/260 (54%), Gaps = 19/260 (7%)
Query: 106 KKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
+++RE++ E V + + + P+ T+VLSPYL G +S R QC+ +Y
Sbjct: 207 QQIRETLRHFCHEEVDRYHEQRDFPAT---AGTSVLSPYLAIGAISVR---QCIARLYWQ 260
Query: 164 VKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREAR 222
++ + +L+WR+F++ + P + +G K + W + W
Sbjct: 261 QSYLSNGREVWLSELIWREFYHHLIHFEPKLVKGQGFVEWEKHLLWPAKPDWFERWCRGE 320
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP +DA M QL + GWMH+ R VA FLT+ D+ V+W G F + L+D D+A NN
Sbjct: 321 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHVNWRLGEQYFMQKLVDGDFAANN 379
Query: 283 GNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W + + Q Y RI++P++ G+K+DPNG +++H+LP L +P +++++PW P
Sbjct: 380 GGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGEFVKHWLPELAQVPSKFVHQPWNWPGH 439
Query: 342 IQTRAKCIIGRDYPAPVVSH 361
+Q DYPAP+V H
Sbjct: 440 MQL--------DYPAPMVDH 451
>gi|422920343|ref|ZP_16953666.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae BJG-01]
gi|341650406|gb|EGS74272.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae BJG-01]
Length = 469
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 19/248 (7%)
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ--NVKKHTSPPVSLV 175
V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y ++ + + +
Sbjct: 221 VQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYHESSMGELSEGAQVWL 274
Query: 176 GQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+L+WR+F+ + PN + + ++ W ND+E W E +TGYP +DA M Q
Sbjct: 275 SELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQ 334
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L + GWMH+ R VA FLT+ D+ + W G F LID D+A NNG W W + +
Sbjct: 335 LNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCD 393
Query: 295 YQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT P +
Sbjct: 394 GQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP--------AVNSVL 445
Query: 354 YPAPVVSH 361
YPA +V H
Sbjct: 446 YPARLVDH 453
>gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
[Acinetobacter baumannii ATCC 17978]
Length = 480
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 194/387 (50%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P+ AT+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKVERDFPNI---QATSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V KE + K E +
Sbjct: 455 LGLNYPKPIVD----LKETRLKAIETF 477
>gi|395005572|ref|ZP_10389447.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
gi|394316499|gb|EJE53223.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
Length = 487
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 147/306 (48%), Gaps = 24/306 (7%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
VP + LG++ G L G + ++ I E NF KG +
Sbjct: 195 VPPLAALGFEPAGMA-LPAGESGAQALFEDFQQRIGRYEDARNFPAVKG---------PS 244
Query: 138 VLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM 197
LS +L+FG +S R + + K + + +L+WRDF++ + P+
Sbjct: 245 YLSVHLRFGTISPRLLART---AHGLAIKGNQGAATWLSELVWRDFYHQILAHHPHVVEH 301
Query: 198 KGNRICKQIPWSND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254
I W + EL AAW E RTGYP +DA M Q+ + G+MH+ R VA FL
Sbjct: 302 SFKPAYDAIAWESGPEAQELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLV 361
Query: 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPN 313
+ D+ + W G F L D D A NNG W W S S Q Y RI++PVS +K+D
Sbjct: 362 K-DLGIDWRWGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFDAR 420
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTA-PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
G +IR +LP L +P ++ PW A PL +Q A ++G YP P+V HD E +++
Sbjct: 421 GQFIRKYLPQLATLPDAALHAPWKAKPLELQA-AGVVLGSTYPHPIVDHD----EARQRT 475
Query: 373 GEAYAL 378
E YA+
Sbjct: 476 LERYAV 481
>gi|409405685|ref|ZP_11254147.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
gi|386434234|gb|EIJ47059.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
Length = 497
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 150/310 (48%), Gaps = 21/310 (6%)
Query: 78 VPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
+P+ E LG++ +EL G G L+ I +F KG PS
Sbjct: 198 LPSHEALGFRPSNLDELKIPTGMSGAEALLEDFLGRIGAYGTARDFPAVKG-PS------ 250
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
LS +L+FG +S R + + V L +L WRDF++ + P
Sbjct: 251 --YLSIHLRFGTVSIRTLARAAMQAMHAGQGAAGAAVWL-SELTWRDFYFMILHHHPRVT 307
Query: 196 RMKGNRICKQIPW---SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
I W + +EL AAW E RTGYP +DA M Q+ + G+MH+ R VA F
Sbjct: 308 DQAFKPEYDAIRWEQGQHAEELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASF 367
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
LT+ D+ + W +G F R L D D + NNG W W S S Q Y RI++PV+ +K+D
Sbjct: 368 LTK-DLGIDWRRGEKYFARHLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFD 426
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRK 371
P+G +IR +LP L + + I+ PWTA + A +G++YP P+V H E + +
Sbjct: 427 PDGKFIRRYLPQLARLSDKRIHAPWTATPDERLSAGVTLGQNYPRPIVDH----AEARER 482
Query: 372 LGEAYALNQK 381
YA+ +K
Sbjct: 483 TLARYAVVKK 492
>gi|334703517|ref|ZP_08519383.1| deoxyribodipyrimidine photolyase [Aeromonas caviae Ae398]
Length = 474
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 149/276 (53%), Gaps = 32/276 (11%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+EA ++L + V ++ + + P+ T+VLSPYL G +S+R QC+
Sbjct: 206 GEAEASRRLHAFLDQA--VLDYGETRDFPAL---AGTSVLSPYLAAGIISAR---QCVGA 257
Query: 160 VYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND 211
+ Q + + P + +L+WR+F+ + P+ + NR K +PWS D
Sbjct: 258 LQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPS---LSMNRPFKPETAALPWSWD 314
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ AAW E RTGYP +DA M L GWMH+ R VA FLT+ D+ +HW G D F
Sbjct: 315 PDAFAAWCEGRTGYPVVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 272 LLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
LID D A NNG W W + + + Y R+++P + G+++DP G +IR ++ L D+P
Sbjct: 374 RLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEFIRTWVTELADVPAA 433
Query: 331 YIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
Y++EP W L ++ R +DYPAP+V H A
Sbjct: 434 YLHEPHDW---LRLKGR------QDYPAPMVDHAVA 460
>gi|334132216|ref|ZP_08505977.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
gi|333442862|gb|EGK70828.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
Length = 483
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 166/370 (44%), Gaps = 28/370 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V D + GI + +F D + GGKP + + + W P L
Sbjct: 120 VHDALAQDGIGFDTFKDQVIFE-CDEVLTQGGKPFSVFTPY-----KNAWLKKLTPFHLK 173
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFR-----GGESEALKKLRESISDKEW 117
+ P G T+ L G+ L + G + I +
Sbjct: 174 AYPVRTYAGALAAPPAGTIPSLADMGFAPTNLPTLKLPTGMSGADTLFDGFCDRIDRYKV 233
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
+ +F KG PS LS +L+FG +S R + + + + + + +
Sbjct: 234 LRDFPAAKG-PS--------YLSVHLRFGTVSIRRLAR------EAHARGGAGAETWLSE 278
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
L+WRDF++ + + P+ + W +DDE AW E RTGYP +DA QL +
Sbjct: 279 LIWRDFYFQILWHNPHVLTGSFRPEYDAVHWVDDDEKFRAWCEGRTGYPLVDAAQRQLAQ 338
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ- 296
G+MH+ R A FLT+ D+ +HW +G F R L D D A NNG W W + + Q
Sbjct: 339 TGYMHNRLRMVSASFLTK-DLGIHWRRGEHWFARQLNDFDLAANNGGWQWAASTGCDAQP 397
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ RI++PV+ +K+D +G +IR + P L K+ I+ PW A Q A C+IG DYPA
Sbjct: 398 WFRIFNPVTQSEKFDADGQFIRRYCPELAKFDKKRIHAPWLATPLEQKMAGCVIGSDYPA 457
Query: 357 PVVSHDSASK 366
P+V H +A +
Sbjct: 458 PIVDHAAARE 467
>gi|421649527|ref|ZP_16089918.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC0162]
gi|425750310|ref|ZP_18868277.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-348]
gi|445460376|ref|ZP_21448285.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC047]
gi|408513531|gb|EKK15149.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC0162]
gi|425487712|gb|EKU54070.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-348]
gi|444773611|gb|ELW97707.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC047]
Length = 480
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 193/387 (49%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P AT+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKVERDFPHI---QATSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMQQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V KE + K E +
Sbjct: 455 LGLNYPKPIVD----LKETRLKAIETF 477
>gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1002]
Length = 473
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 171/339 (50%), Gaps = 17/339 (5%)
Query: 29 IQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKG 88
+ K+ G P + F K Q + +P + + + + F+ S + E L K
Sbjct: 135 MTKDDGTPYKVFTPFWKKTEQHYISKAPSKL-IRVKSKIKKINIFKNS-ISIKEILPKKN 192
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
+ ++ + E EA K L+E I++K + ++ + P T+ LSP+LKFG +
Sbjct: 193 WHKKFEKYWDPSEKEAKKYLQELINNK--IEDYGDARDIPGV---NGTSKLSPFLKFGQI 247
Query: 149 SSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGN--RICKQI 206
++ D+ VKK + +L WR+F +++ P +KGN +
Sbjct: 248 HVETIWKKCQDI--KVKKIGYR--KYINELGWREFSHSLINYFPQM--LKGNLRKDFDNF 301
Query: 207 PWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGR 266
PW +D+ L AW+ TGYP +DA M +L + GWMH+ R VA FL + + +HW +G
Sbjct: 302 PWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVK-HLRIHWMEGE 360
Query: 267 DVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
F L+D + A N W W++ C + Y RI++P+ G+K+D G Y + ++P LK
Sbjct: 361 KHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKAGIYTKKWVPELK 420
Query: 326 DMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+MP +++Y+PW Q + K I+G +YP P+V H A
Sbjct: 421 NMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVDHVEA 459
>gi|110833627|ref|YP_692486.1| DNA photolyase [Alcanivorax borkumensis SK2]
gi|110646738|emb|CAL16214.1| DNA photolyase [Alcanivorax borkumensis SK2]
Length = 484
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 135/264 (51%), Gaps = 18/264 (6%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A ++L + + +A++ + + P T+ LS L G LS ++ T
Sbjct: 215 GEEAAWQQLDQFMERS--LADYRRNRDFPDL---SGTSGLSVALSAGTLSVASCFRAATQ 269
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAW 218
+ + +L WRDF+ + P R +G R + W NDDEL AAW
Sbjct: 270 AMADAGSRDGA-ACWIDELAWRDFYRQIMAQFPRVSRGQGFRPETDLLEWKNDDELFAAW 328
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
E RTGYP +DA M QL GWMH+ R A FL++ +++ W +G F LID D+
Sbjct: 329 CEGRTGYPLVDAAMRQLVATGWMHNRLRMVTAMFLSK-HLWLDWRRGEAFFMTHLIDGDF 387
Query: 279 AINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
A NNG W W + S + Y R+++PV G+++D G +I H++P L+D+ + I+EPW
Sbjct: 388 AANNGGWQWSASSGTDAVPYFRVFNPVRQGQRFDSEGRFIAHWVPQLRDLDSKQIHEPWK 447
Query: 338 APLTIQTRAKCIIGRDYPAPVVSH 361
PL + RDYP PVV H
Sbjct: 448 QPL---------LARDYPPPVVPH 462
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 176/364 (48%), Gaps = 17/364 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
K+K GI+V S + L P I KNG + + + K Q L + P P L
Sbjct: 108 KIKLALGEKGIKVHSFNGNLLHEPWTIKNKNGDFFKV-FTPYWKQCRQIL--NIPSPFML 164
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
+ P ++ ++ + + + + E +P GE A KKL E + ++ +
Sbjct: 165 TKRPRGIEITSDDLGKWKLLPAINWAARFSEYWTP---GEEGAQKKLNEFVVHH--LSGY 219
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
++ + P+ K AT+ LSP+L FG +S + L + + +L WR
Sbjct: 220 KRERDFPA---KNATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASLEHFLSELGWR 276
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+F + + P D + PW ND++LL W++ TGYP IDA M +L G+M
Sbjct: 277 EFSVYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYM 336
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRI 300
H+ R VA FLT+ D+ + W G F L+D+D A N+ +W W++ C + Y RI
Sbjct: 337 HNRVRMIVASFLTK-DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRI 395
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++PV +K+DP+G YIR ++P L + + I++PWT + +G+ YP P++
Sbjct: 396 FNPVLQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDA----NASSIFLGKKYPKPIID 451
Query: 361 HDSA 364
H A
Sbjct: 452 HQEA 455
>gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
Length = 486
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 143/264 (54%), Gaps = 17/264 (6%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GES AL++L E+ ++ + ++++ + P+A T+ +S YL G LS R + T
Sbjct: 217 AGESAALERL-ETFAEHR-LHHYQQRRDYPNA---KGTSAISAYLAIGSLSPRAAMRAAT 271
Query: 159 DVYQNVKKHTSPPV-SLVGQLLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLA 216
Q S + + +LLWRDF+ + P R + + + I W +D E
Sbjct: 272 RANQGEWTSGSEGAQTWISELLWRDFYQHILTAFPRVSRGRAFQPHTENIVWRDDPEAFQ 331
Query: 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS 276
AW E RTG P +DA M QL + GWMH+ R A FL++ ++ + W +G F R LID
Sbjct: 332 AWCEGRTGIPIVDAAMRQLLQTGWMHNRLRMVTAMFLSK-NLLIDWRRGEQYFRRQLIDG 390
Query: 277 DWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
+ NNG W W S + Y RI++PV+ G+++D +G +IRH++P LKD+P +Y++EP
Sbjct: 391 ELGANNGGWQWAASTGTDAAPYFRIFNPVTQGQRFDKDGAFIRHYVPELKDLPNKYLHEP 450
Query: 336 WTAPLTIQTRAKCIIGRDYPAPVV 359
WT P Q DYP P+V
Sbjct: 451 WTHPDADQL--------DYPQPIV 466
>gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
Length = 475
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 191/380 (50%), Gaps = 28/380 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP---- 58
+K+ GI V S L+ P +++++ P + F + A + SPLP
Sbjct: 113 IKEKLQGLGITVHSDNGSLLWEPWQVLKRDQ-TPYQIFTPFYRHARDSVPVRSPLPRPAE 171
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
++L+++ P + ++ P + + L ++ GE+ A ++ + + ++ +
Sbjct: 172 IALAAVTPYSALKLADLELRPN------HPWADKVLHHWQPGEAGAQQRWQTFMEEE--L 223
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
+ + + P+ +P + LSP + +G +S +Q D Q + + ++ QL
Sbjct: 224 LGYGEGRDLPA---QPHVSRLSPAIHWGEIS---VHQLWHDA-QAIGHEDA--LAFQRQL 274
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F T F P+ DR+ +R PW +D E L W++ TG P++DA M +L +
Sbjct: 275 AWREFSVTQLFHHPDMDRINLDRRFNLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQT 334
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQY 297
G MH+ R V FL + ++ +HW G F L+D+D A N+ +W W++ C + Y
Sbjct: 335 GTMHNRVRMVVGSFLVK-NLGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPY 393
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
RI++PV+ G+K+DP+G+Y RHF+P L +P Y++ PW AP + +G YP P
Sbjct: 394 FRIFNPVTQGQKFDPHGDYTRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEP 453
Query: 358 VVSHDSASKECKRKLGEAYA 377
+V K +++ +AYA
Sbjct: 454 MVD----IKVSRQQALDAYA 469
>gi|344924235|ref|ZP_08777696.1| deoxyribodipyrimidine photo-lyase [Candidatus Odyssella
thessalonicensis L13]
Length = 473
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 177/365 (48%), Gaps = 15/365 (4%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
++K GI V S SH LF P +I Q N GK + F K PLP+
Sbjct: 105 RIKTELEARGIGVKSFNSHLLFEPWEI-QNNQGKFFQVFTPFWKKCLARARIEPPLPIPA 163
Query: 62 S-SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+ L ++ +PT + G Q + GE A +KL IS +A
Sbjct: 164 NMQLMSGATFDLKKLGLLPTKPDWA-SGLRQT----WTPGEVGAQQKLANFISR---IAG 215
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+++ + P+ + AT++LSP+L +G +S R + + + ++ + ++ W
Sbjct: 216 YKQNRNYPA---QQATSLLSPHLAWGEISVRQLWHAIHTQIRLYPVLEQDALNFLSEIGW 272
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+F Y + + P + PW D+ L W + +TGYP IDA M +L G+
Sbjct: 273 REFSYHLLYHVPTLPTHPLRQQFANFPWQQDENALRKWSQGQTGYPIIDAGMRELWHTGY 332
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNR 299
MH+ R VA FL + D+ + W++G F L+D+D A N+ +W W++ C + Y R
Sbjct: 333 MHNRVRMIVASFLVK-DLLLSWQQGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFR 391
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
+++PV G+K+DP G Y++ ++P L + +YI++PW A A +G YP P+V
Sbjct: 392 VFNPVLQGEKFDPEGEYVKRWVPELDLLSADYIHKPWQASAIKLKGAGIELGVTYPFPMV 451
Query: 360 SHDSA 364
H+ A
Sbjct: 452 DHEKA 456
>gi|406675941|ref|ZP_11083127.1| hypothetical protein HMPREF1170_01335 [Aeromonas veronii AMC35]
gi|404626164|gb|EKB22974.1| hypothetical protein HMPREF1170_01335 [Aeromonas veronii AMC35]
Length = 473
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 146/273 (53%), Gaps = 26/273 (9%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+EA ++L + + V ++ + + P+ T+VLSPYL G +S R QC+
Sbjct: 206 GEAEARRRLNDFLEQA--VLDYGETRDFPAIA---GTSVLSPYLAAGIISPR---QCVAA 257
Query: 160 VYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDEL 214
+ Q + + P + +L+WR+F+ + P + + +PWS D +
Sbjct: 258 LQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPTLSMNRPFKAETAALPWSWDPDA 317
Query: 215 LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLI 274
AAW E RTGYP +DA M L GWMH+ R VA FLT+ D+ +HW G D F LI
Sbjct: 318 FAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMSRLI 376
Query: 275 DSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
D D A NNG W W + + + Y R+++P + G+++DP G +IR ++ L D+P Y++
Sbjct: 377 DGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEFIRTWVTELADIPAAYVH 436
Query: 334 EP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+P W L ++ R +DYPAP+V H A
Sbjct: 437 QPHDW---LRLKGR------QDYPAPMVDHAVA 460
>gi|388567569|ref|ZP_10154000.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
gi|388265174|gb|EIK90733.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
Length = 496
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 156/314 (49%), Gaps = 30/314 (9%)
Query: 53 ASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESI 112
A +PLP LS VPT+ E+G++ +L P GE A + + +
Sbjct: 185 ALAPLPEGLSR-------------PVPTLAEIGFERTNLAQL-PLPTGEDGAHQLFDDFL 230
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
+ + +++ + P+ + LS +L+FG +S R L + + +P
Sbjct: 231 ---QRIDRYDEARDYPAI---KGPSYLSAHLRFGTVSIR----ALASIAHELHAQGNPGA 280
Query: 173 SL-VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND---DELLAAWREARTGYPWI 228
S + +L+WRDF++ + P+ + + + + D L AW E RTGYP +
Sbjct: 281 STWLSELIWRDFYHQILSNFPHVAQSAFKPAYDAVRYEHGKAADALFKAWCEGRTGYPLV 340
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M Q+ + G+MH+ R VA FL + D+ +HW+ G F LID D A NNG W W
Sbjct: 341 DAAMAQINQTGYMHNRLRMVVASFLVK-DLGIHWQWGERYFAEHLIDYDLAANNGGWQWA 399
Query: 289 SCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
S S Q + RI++PV+ +++DP G +IR +LP L ++P I+ PW A A
Sbjct: 400 SSSGCDAQPWFRIFNPVTQSERFDPQGRFIRRYLPQLAELPDHAIHAPWKATPVELAAAG 459
Query: 348 CIIGRDYPAPVVSH 361
IG YPAP+V+H
Sbjct: 460 VEIGVHYPAPLVNH 473
>gi|184159014|ref|YP_001847353.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
gi|332874793|ref|ZP_08442663.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
gi|384132774|ref|YP_005515386.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter
baumannii 1656-2]
gi|384144186|ref|YP_005526896.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MDR-ZJ06]
gi|385238477|ref|YP_005799816.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii
TCDC-AB0715]
gi|387123058|ref|YP_006288940.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MDR-TJ]
gi|407933671|ref|YP_006849314.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii TYTH-1]
gi|416145025|ref|ZP_11600142.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB210]
gi|417569487|ref|ZP_12220345.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC189]
gi|417575678|ref|ZP_12226526.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-17]
gi|417874362|ref|ZP_12519215.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH2]
gi|417877634|ref|ZP_12522323.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH3]
gi|421203523|ref|ZP_15660660.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AC12]
gi|421533487|ref|ZP_15979770.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AC30]
gi|421630122|ref|ZP_16070835.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC180]
gi|421704353|ref|ZP_16143798.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ZWS1122]
gi|421708131|ref|ZP_16147510.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ZWS1219]
gi|424051485|ref|ZP_17789017.1| hypothetical protein W9G_00174 [Acinetobacter baumannii Ab11111]
gi|425755113|ref|ZP_18872940.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-113]
gi|445473631|ref|ZP_21452898.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC338]
gi|183210608|gb|ACC58006.1| Deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
gi|322508994|gb|ADX04448.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter
baumannii 1656-2]
gi|323518978|gb|ADX93359.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii
TCDC-AB0715]
gi|332737054|gb|EGJ68011.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
gi|333367141|gb|EGK49155.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB210]
gi|342229084|gb|EGT93954.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH2]
gi|342235250|gb|EGT99861.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH3]
gi|347594679|gb|AEP07400.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MDR-ZJ06]
gi|385877550|gb|AFI94645.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii MDR-TJ]
gi|395553710|gb|EJG19716.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC189]
gi|395571167|gb|EJG31826.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-17]
gi|398326897|gb|EJN43038.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AC12]
gi|404665041|gb|EKB33004.1| hypothetical protein W9G_00174 [Acinetobacter baumannii Ab11111]
gi|407190187|gb|EKE61406.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ZWS1122]
gi|407190744|gb|EKE61959.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ZWS1219]
gi|407902252|gb|AFU39083.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii TYTH-1]
gi|408698890|gb|EKL44376.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC180]
gi|409988487|gb|EKO44657.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AC30]
gi|425495563|gb|EKU61743.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-113]
gi|444769056|gb|ELW93255.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC338]
Length = 480
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 193/387 (49%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF-----LKLAGQPLWASSPL 57
V+DY + G E+F T+F P I+ +P + +F KL L P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P AT+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKVERDFPHI---QATSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I++P++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELTHLDNKTIHDPYS--------SKTD 454
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V KE + K E +
Sbjct: 455 LGLNYPKPIVD----LKETRLKAIETF 477
>gi|27367890|ref|NP_763417.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
gi|27359463|gb|AAO08407.1|AE016813_159 Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
Length = 471
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 143/260 (55%), Gaps = 19/260 (7%)
Query: 106 KKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
+++RE++ E V + + + P+ T+VLSPYL G +S R QC+ +Y
Sbjct: 209 QQIRETLRHFCHEEVDRYHEQRDFPAT---AGTSVLSPYLAIGAISVR---QCIARLYWQ 262
Query: 164 VKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREAR 222
++ + +L+WR+F++ + P + +G K + W + W
Sbjct: 263 QSYLSNGREVWLSELIWREFYHHLIHFEPKLVKGQGFVEWEKHLLWPAKPDWFDRWCRGE 322
Query: 223 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINN 282
TGYP +DA M QL + GWMH+ R VA FLT+ D+ V+W G F + L+D D+A NN
Sbjct: 323 TGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHVNWRLGEQYFMQKLVDGDFAANN 381
Query: 283 GNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLT 341
G W W + + Q Y RI++P++ G+K+DPNG +++H+LP L ++P +++++PW P
Sbjct: 382 GGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGEFVKHWLPELVEVPSKFVHQPWNWPGH 441
Query: 342 IQTRAKCIIGRDYPAPVVSH 361
+Q DYPAP+V H
Sbjct: 442 MQL--------DYPAPMVDH 453
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 171/386 (44%), Gaps = 40/386 (10%)
Query: 8 STAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL---SSL 64
S GIEV + L P I K+ G+P Y F K W + P P L L
Sbjct: 119 SAIGIEVKGFLDIALHAPQAIATKSTGEPYKVYSPFWKN-----WITQPKPSPLPKPQKL 173
Query: 65 PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKP 124
+ + + +P++ ELG+ + P G E +KL D + + N++K
Sbjct: 174 LGLKNCDGLDAIPLPSLAELGF---SHNQTIPASG--EEIAQKLLTEFCDSQKLYNYKKD 228
Query: 125 KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP------PVSLVG-- 176
+ P+ T+ LSP+L+FG + R + V + + + L G
Sbjct: 229 RDFPAI---DGTSNLSPHLRFGTIGIRDCWAATVAVMIDAEADITSEQDQRNAQKLEGIQ 285
Query: 177 ----QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
+L WR+F+ V F P + ++ W + E AW RTGYP +DA M
Sbjct: 286 TWRQELAWREFYQHVLFHFPQLSQSAYRPQMQRFAWDQNHEYFQAWSNGRTGYPIVDAAM 345
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
QL + GWMH+ R VA FLT+ D+ ++W+ G F + LID D A NNG W W + S
Sbjct: 346 RQLNQTGWMHNRCRMIVASFLTK-DLILNWQWGELYFMQKLIDGDLAANNGGWQWSASSG 404
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
Q RI++P S K+DP G YIR +LP L + + + +Q
Sbjct: 405 MDTQPLRIFNPSSQALKFDPEGTYIRRWLPELVHLTTAELLSGNISNYQLQK-------S 457
Query: 353 DYPAPVVSHDSASKECKRKLGEAYAL 378
+YPAP+V H +RK E Y L
Sbjct: 458 NYPAPIVDHAIQ----QRKFKERYQL 479
>gi|386010399|ref|YP_005928676.1| PhrB [Pseudomonas putida BIRD-1]
gi|313497105|gb|ADR58471.1| PhrB [Pseudomonas putida BIRD-1]
Length = 480
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 168/333 (50%), Gaps = 22/333 (6%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP-LPVSLSSLPPVG 68
+ I+ S + F P ++ ++G + + F K + L S P L + P+
Sbjct: 120 SAIQAHSYLDQLFFRPGTVLTRSGDYFQV-FSQFKKTCLEHLHRSLPALARRVKRQAPL- 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
++G I + VE G + + P GE+EA +L + D + ++ + P
Sbjct: 178 NIGSDPIPQ--HVEGFGKTTHALRDHWP--AGEAEAQSRLSRFLDDT--IDDYHHLRDLP 231
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDFF 184
+ KP T+ LSPYL G +S R QCL + ++ + + +LLWR+F+
Sbjct: 232 A---KPGTSQLSPYLAAGVISPR---QCLHGALAGNRGEFDSGSTGVQTWINELLWREFY 285
Query: 185 YTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+ G P R + R + +PW + L AW + RTG+P IDA M QL GWMH+
Sbjct: 286 KHILSGYPQVSRHRAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHN 345
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYS 302
R VA FL++ ++ + W KG F R LID D A NNG W W S + Y RI++
Sbjct: 346 RLRMVVAMFLSK-NLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFN 404
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
PVS +++DP G +IRH++P L+++ ++ I++P
Sbjct: 405 PVSQSQRFDPQGQFIRHWVPELQELDEKAIHQP 437
>gi|217972489|ref|YP_002357240.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
Length = 499
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 142/281 (50%), Gaps = 15/281 (5%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC-- 156
GE +A + L I K V ++++ + PS T+ +SPYL G +S R QC
Sbjct: 220 AGEGQAKRILSAFIQQK--VQDYKQDRDFPSI---DGTSSISPYLAIGVVSPR---QCVA 271
Query: 157 --LTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDE 213
L D + + TSP + + +L WR+F+ + P+ + NR + W N+ +
Sbjct: 272 ALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNFNRQADHVQWRNNPQ 331
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
AAW E RTGYP +DA M QL + GWMH+ R VA FLT+ + + W G F + L
Sbjct: 332 EFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK-HLLIDWRWGERYFRQKL 390
Query: 274 IDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
ID D A NNG W W + C Y RI++P+S +K+DP+G++IR +LP L + +
Sbjct: 391 IDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRKYLPELASWGIKQL 450
Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373
++P TA YP+ +V H +A LG
Sbjct: 451 HQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARSRALTVLG 491
>gi|345872727|ref|ZP_08824656.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
gi|343918048|gb|EGV28819.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
Length = 477
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 177/370 (47%), Gaps = 31/370 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
G+ S LF P +I+ G +P + +F + A + L + P D+
Sbjct: 119 GLHCESHNGSLLFEPWEILTAQG-QPYRVFSAFWRNATKRL-------PDIQPTAPTKDI 170
Query: 71 GY---------FEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
+ EI ++ E+ + QE +P GE A + + ++ +
Sbjct: 171 QWTRIEPPLPGLEIKDLALQPEIAWDAGLQETWTP---GEQAAQDMAAHFLDTR--LSRY 225
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
+ + P P T+ LSP+L FG +S R + + + + P + ++ WR
Sbjct: 226 GEDRDRPD---MPGTSRLSPHLHFGEISPRRLLELTRSRVADPSEDPAEP--FIREVGWR 280
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSND--DELLAAWREARTGYPWIDAIMVQLRKWG 239
+F + + + P N + PW D D L AWR+ RTG P +DA + +L G
Sbjct: 281 EFAHHLLYHFPQTPTEPLNPRFAEFPWKQDETDARLQAWRQGRTGIPVVDAGLRELWDTG 340
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYN 298
WMH+ R VA FLT+ ++ + W+KG F L+D+D A N W W + C + Y
Sbjct: 341 WMHNRVRMLVASFLTK-NLLLPWQKGAVWFWDTLVDADLASNTLGWQWTAGCGADAAPYF 399
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
R+++PV G+++DP+G YI+ + P L +P +++++PWTAP TI T A +G DYP P+
Sbjct: 400 RVFNPVLQGQRFDPDGAYIKRWCPELARLPLKFLHQPWTAPTTILTAAGVTLGVDYPHPM 459
Query: 359 VSHDSASKEC 368
V ++ ++
Sbjct: 460 VDLATSRQQA 469
>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
Length = 484
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 146/275 (53%), Gaps = 13/275 (4%)
Query: 97 FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC 156
++ GE A ++L E +S++ V + + P +T+ LSP+L G ++ Q
Sbjct: 209 WKPGEDGAHERLDEFVSER--VCGYASLRDVPGVE---STSRLSPHLANGEITPAQIIQA 263
Query: 157 L--TDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDEL 214
L +D + K T ++ WR+F Y + P+ + N PW +D+
Sbjct: 264 LKASDADASPKDRTV----FRKEVGWREFSYHLLVNEPDLPQQNHNSRFDGFPWKDDETA 319
Query: 215 LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLI 274
L AW++ TGYP +DA M +L + GWMH+ R A FLT+ + V W +G F L+
Sbjct: 320 LLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTASFLTK-HLMVDWREGERWFWDTLV 378
Query: 275 DSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
D+D A N +W W++ S + Y R+++P+ G+K+DP+G+Y+R ++P L ++P ++I+
Sbjct: 379 DADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPDGDYVRRYVPELANLPSKFIH 438
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+PWTAP +A +G YP P+V H A
Sbjct: 439 KPWTAPDDALAKAGVHLGETYPMPIVDHQQARNRA 473
>gi|386042915|ref|YP_005961720.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404409820|ref|YP_006695408.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
gi|345536149|gb|AEO05589.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404229646|emb|CBY51050.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
Length = 467
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 138/275 (50%), Gaps = 12/275 (4%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+L GE A +L I K VA+++K + P T+ LS YL+ G +S R
Sbjct: 187 DLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISVRT 241
Query: 153 FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
+Q L + + T +L WRDF+ + PN + I W N+
Sbjct: 242 IWQALQE-----NEATEGRAIFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNR 296
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
E AW++ +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++
Sbjct: 297 EFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-DLLIDWRFGEKYFQQM 355
Query: 273 LIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
LID D A N G W W S + Y RI++P + +K+DP G +IR ++ L ++P ++
Sbjct: 356 LIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIREYVKELANLPDKF 415
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
I++P Q ++G+DYP P+V H K
Sbjct: 416 IHQPEKMSEIEQKEHGLLLGKDYPFPIVDHKERRK 450
>gi|417870325|ref|ZP_12515291.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH1]
gi|417881807|ref|ZP_12526117.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH4]
gi|421689632|ref|ZP_16129312.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-143]
gi|421791224|ref|ZP_16227401.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-2]
gi|424062524|ref|ZP_17800010.1| hypothetical protein W9M_03346 [Acinetobacter baumannii Ab44444]
gi|445477091|ref|ZP_21454066.1| deoxyribodipyrimidine photolyase / FAD binding domain of DNA
photolyase multi-domain protein [Acinetobacter baumannii
Naval-78]
gi|342228012|gb|EGT92917.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH1]
gi|342238562|gb|EGU02993.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii ABNIH4]
gi|404557798|gb|EKA63093.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-143]
gi|404671476|gb|EKB39319.1| hypothetical protein W9M_03346 [Acinetobacter baumannii Ab44444]
gi|410403261|gb|EKP55358.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-2]
gi|444776598|gb|ELX00636.1| deoxyribodipyrimidine photolyase / FAD binding domain of DNA
photolyase multi-domain protein [Acinetobacter baumannii
Naval-78]
Length = 480
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 193/387 (49%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF-----LKLAGQPLWASSPL 57
V+DY + G E+F T+F P I+ +P + +F KL L P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P AT+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKVERDFPHI---QATSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I++P++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELTHLDNKTIHDPYS--------SKTD 454
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V KE + K E +
Sbjct: 455 LGLNYPKPIVD----LKETRLKAIETF 477
>gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont]
Length = 477
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 146/287 (50%), Gaps = 41/287 (14%)
Query: 97 FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC 156
F GE ALK+LR+ + + V +++ + P+ T+ LSPYL G LS R QC
Sbjct: 204 FPAGEEAALKQLRQFVQQR--VEKYDQQRDIPAI---DGTSRLSPYLAIGVLSPR---QC 255
Query: 157 LTDVYQNVKKHTSPPVSLV--GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIP------- 207
L + + + + +LV +L+WR+F+ + P +CK P
Sbjct: 256 LHRILKEHPQALNNGSALVWLNELVWREFYRHLMVTFPA--------LCKHQPFVDWTRN 307
Query: 208 --WSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
W +++ L AW++ +TGYP +DA M QL GWMH+ R A FL + D+ + W +G
Sbjct: 308 VSWQQNEQYLTAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVK-DLLIDWREG 366
Query: 266 RDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ---YNRIYSPVSFGKKYDPNGNYIRHFLP 322
F + LID D A NNG W W + + Y RI++P + G+++D G +IR +LP
Sbjct: 367 ERYFMQQLIDGDLAANNGGWQWAASTGTGTDAAPYFRIFNPTTQGERFDKQGEFIRRWLP 426
Query: 323 VLKDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE 367
L+D+P I++P W K DYPAP+V H +A K+
Sbjct: 427 ELQDVPDSAIHQPHAWA--------EKNNKKLDYPAPIVEHKAARKK 465
>gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 473
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 149/276 (53%), Gaps = 32/276 (11%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+EA ++L + + ++ V ++ + + P+ T+VLSPYL G +S R QC+
Sbjct: 206 GEAEASRRLNDFL--EQAVLDYGETRDFPAIA---GTSVLSPYLAAGIISPR---QCVAA 257
Query: 160 VYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND 211
+ Q + + P + +L+WR+F+ + P + NR K +PWS D
Sbjct: 258 LQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVQIPT---LSMNRPFKPETAALPWSWD 314
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ AAW E RTGYP +DA M L GWMH+ R VA FLT+ D+ +HW G D F
Sbjct: 315 PDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 272 LLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
LID D A NNG W W + + + Y R+++P + G+++DP G +IR ++ L D+P
Sbjct: 374 RLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEFIRTWVSELADLPAA 433
Query: 331 YIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
Y+++P W L ++ R DYPAP+V H A
Sbjct: 434 YLHQPHDW---LRLKGR------HDYPAPMVDHAVA 460
>gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
Length = 476
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 144/285 (50%), Gaps = 21/285 (7%)
Query: 97 FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC 156
F E AL++L++ ++ V ++ K + P+ T+ LSPYL G +S R QC
Sbjct: 204 FPASEQAALQRLKQFCYER--VIHYAKWRDIPAI---DGTSQLSPYLAIGLVSVR---QC 255
Query: 157 LTDVYQN----VKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSND 211
+YQ ++ + S +L+WR+F+ + P+ + + + I W ND
Sbjct: 256 FNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSLSKQIAFQPWTENIRWRND 315
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
AW + TG+P IDA M QL + GWMH+ R A FL + D+ + W G + F
Sbjct: 316 QTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVK-DLLIDWRWGENYFMS 374
Query: 272 LLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
LID D+A NNG W W S + Y RI++P + G+K+DP+G +IRH+LP L D+P
Sbjct: 375 QLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRHWLPELADVPDR 434
Query: 331 YIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
YI+ P + I+T DYP P+V H A EA
Sbjct: 435 YIHTP--SEWAIKTGHYL----DYPQPIVDHAKARVTAIASYEEA 473
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 120/399 (30%), Positives = 176/399 (44%), Gaps = 58/399 (14%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
V + AGI+V + L P D I+ G P Y F K W S P +
Sbjct: 116 VSNALQQAGIQVQNFWDQVLHAP-DEIRSGTGTPYTVYTPFWKK-----WNSKPKAQPVE 169
Query: 63 SLPPVGDVGYFEI------------------SEVPTVEELGYKGYGQEELSPFRGGESEA 104
+LP + Y E+ VPT LG+ + P GE A
Sbjct: 170 TLP----ITYLELMTGLTAEEQAIANQAGAMETVPTALSLGFIWENPLVIEP---GEDAA 222
Query: 105 LKKLRE----SISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160
+KL E +I + + NF G T+ LS LKFG + R +Q V
Sbjct: 223 QQKLEEFCDRAIYEYQGQRNFPAING---------TSQLSAALKFGAIGIRTVWQATQIV 273
Query: 161 YQNVKKHTSPPVSLVGQ--LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAW 218
+ + Q + WR+F+ + P + K PW ND++L AW
Sbjct: 274 MDTCRSEEACTSIRTWQQEIAWREFYQHAMYNFPELADGPYRQAFKDFPWENDEKLFQAW 333
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
+TGYP IDA M QL + GWMH+ R VA FLT+ D+ ++W+ G F + LID D
Sbjct: 334 CRGKTGYPIIDAAMRQLNQTGWMHNRCRMIVASFLTK-DLMINWQWGEKYFMQKLIDGDL 392
Query: 279 AINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
+ NNG W W + S + RI++P S +K+DP G YIRH++P L+ + + +
Sbjct: 393 SANNGGWQWSASSGMDPKPLRIFNPGSQAQKFDPEGEYIRHWVPELRRVDTKVLLTG--- 449
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYA 377
I + + ++ YP+P+V H+ E +RK E YA
Sbjct: 450 --NISSLERRLL--HYPSPIVDHN----EQQRKFKELYA 480
>gi|414562657|ref|YP_005617848.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087193|gb|ADP67273.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 483
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 45/313 (14%)
Query: 95 SPFRGGESEALKKLRESISDK--EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
S F GE EA+ +L+ K ++ + P D AT++LSPYL G +SSRY
Sbjct: 201 SFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLD-------ATSMLSPYLSAGIISSRY 253
Query: 153 FYQCLTDVYQNVKKHTSPPVSLV------GQLLWRDFFYTVAFGTPNFDRMKGNRIC-KQ 205
+ L +K S P++++ Q+LWR+F+Y + G P R + K+
Sbjct: 254 CLKVL------LKTKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSESLVTWEKE 307
Query: 206 IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
I W N+ + AW+E TG+P IDA M QL + GWMH+ R + FL + ++ ++W +G
Sbjct: 308 IHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVK-NLLINWREG 366
Query: 266 RDVFDRLLIDSDWAINNGNWLW---LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLP 322
+ F LID D A+NNG W W + C S Y RI++P+ K +D +GN+I+ F+P
Sbjct: 367 EEYFISNLIDGDLALNNGGWQWSASVGCDSV--PYIRIFNPLHQSKTFDESGNFIKKFIP 424
Query: 323 VLKDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQ 380
LK++P +I++P W+ + DYP P++++ + K + +L +
Sbjct: 425 ELKNVPNHHIHQPHEWSKQKNFKI--------DYPNPIINYSESRK-------TSLSLFK 469
Query: 381 KLNGQVSEDGLKN 393
+ ++ ++GLKN
Sbjct: 470 QARLKLHKNGLKN 482
>gi|407775677|ref|ZP_11122970.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
gi|407281354|gb|EKF06917.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
Length = 492
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 186/391 (47%), Gaps = 27/391 (6%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT-----YQSFLKLAG--QPLWAS 54
++K G+ S ++ LF P D+ K G +++ LKL +P A
Sbjct: 121 EIKAALQNHGLTCESHKANLLFEPWDV--KTGSDTDFKVYSPFWRACLKLPTPREPKSAP 178
Query: 55 SPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
L + + ++ F++S P + + G +E SP GE A +L + I D
Sbjct: 179 ESLALFKGEVDEQINIADFDLSPKP----VNWAGGLEERFSP---GEQGAKDQLFDFIDD 231
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ + ++ + P + T+ LSP+L+FG +S +
Sbjct: 232 R--LTDYADLRDRPD---RRVTSELSPHLRFGEISPYQVWHAANHYADANPGKGKTASKF 286
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +L WR+F + + + + + K PWS+D + L AW++ +TG+P +DA M +
Sbjct: 287 IAELGWREFAHHILYHATDLRSVPLQGQFKHFPWSDDAKGLRAWQKGQTGFPIVDAGMRE 346
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSF 293
L G+MH+ R V L + + +HW G FD L+D+ A N +W W+ C +
Sbjct: 347 LWHTGYMHNRVRMIVGSILVK-HLLIHWRDGLAWFDDTLVDACPANNPFSWQWIGGCGAD 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Y RI++PV G+K+DP G Y+R ++P L+DMP++YI++PW A I A +G+
Sbjct: 406 AAPYFRIFNPVLQGEKFDPKGEYVRQWVPELRDMPEQYIHKPWEASPLILKAADVTLGKT 465
Query: 354 YPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
YP P++ KE + + EAY +K G
Sbjct: 466 YPEPLI----GLKEGRERALEAYQDMKKAAG 492
>gi|421673232|ref|ZP_16113176.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC065]
gi|421689964|ref|ZP_16129637.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-116]
gi|404565468|gb|EKA70636.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-116]
gi|410387051|gb|EKP39511.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC065]
Length = 480
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 191/387 (49%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V ++ + P T+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYNVERDSPHI---QGTSKLSPYLNIGILSVR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKNTQKIKWNHNPEHLTAWQTGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V KE + K E +
Sbjct: 455 LGLNYPKPIVD----LKETRLKAIETF 477
>gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
Length = 484
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 169/363 (46%), Gaps = 31/363 (8%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
T GIE L + D I G P Y F K W S P + L
Sbjct: 124 TRGIETLEKNWDQLLHSPDTILSGAGTPYTVYTPFWKK-----WHSQPKVEPIEILANCE 178
Query: 69 DVGYFE--------ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
++ E + ++PT +LG+ G+ L P GE A ++L + + +
Sbjct: 179 NLTAREEEIAEKSGVIKLPTARDLGFIWSGELILEP---GEVAAWERLTDFLDCA--IDE 233
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY--QNVKKHTSPPVSLVGQL 178
+E+ + P+ T++LSP LKFG + R +Q ++ N ++ ++ ++ +L
Sbjct: 234 YEEKRNYPAI---DGTSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKEL 290
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F+ + P + K PWS++ E AW E +TGYP +DA M QL +
Sbjct: 291 AWREFYQHAMYHFPELAEGAYRDVFKNFPWSDNQEHFQAWCEGKTGYPIVDAAMRQLNET 350
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
GWMH+ R VA FLT+ D+ ++ + G F + LID D + NNG W W + S +
Sbjct: 351 GWMHNRCRMIVASFLTK-DLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL 409
Query: 299 RIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPV 358
RI++P S +K+D +G YIRH++ L + EY+ PL Q+ YP +
Sbjct: 410 RIFNPSSQAQKFDSDGEYIRHWVGELASVETEYLIGGNITPLERQSVG-------YPTSI 462
Query: 359 VSH 361
V H
Sbjct: 463 VDH 465
>gi|417549253|ref|ZP_12200333.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-18]
gi|417563726|ref|ZP_12214600.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC143]
gi|395555482|gb|EJG21483.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC143]
gi|400387221|gb|EJP50294.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-18]
Length = 480
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 192/387 (49%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D E ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGENIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P T+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKLERDFPHI---QGTSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V KE + K E +
Sbjct: 455 LGLNYPKPIVD----LKETRLKAIETF 477
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 150/308 (48%), Gaps = 33/308 (10%)
Query: 57 LPVSLSSLPPVGDVGYF--EISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
+P S+P + D+G+ +++ +P + G E L G E K R
Sbjct: 181 MPREPQSMPSLADIGFLPSDLASLP----VKAGAAGAEALFADFAGRIERYKAQR----- 231
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+F KG + LS +L+FG LS R + + + + ++
Sbjct: 232 -----DFPGVKG---------VSYLSVHLRFGTLSIR---RLAAYAWHDGGEGA---MTW 271
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +L+WRDF+ V + P+ + +P+ ND E AWRE RTGYP +DA M Q
Sbjct: 272 LSELIWRDFYQQVLWHRPDAAKHAFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQ 331
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L + G+MH+ R A FL + D+ + W G F L+D D A NNG W W + +
Sbjct: 332 LNRSGYMHNRLRMVAASFLVK-DLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCD 390
Query: 295 YQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
Q Y RI++PVS +K+DP+G +IR ++P L +P + I+ PW A A +GRD
Sbjct: 391 AQPYFRIFNPVSQSEKFDPDGRFIRRYVPELAALPDKLIHAPWQAKPEQLMSAGVRLGRD 450
Query: 354 YPAPVVSH 361
YP P+V H
Sbjct: 451 YPHPIVDH 458
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 165/367 (44%), Gaps = 23/367 (6%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTY----QSFLKLAGQPLWASSPLPVSLSSLPP 66
GI + L P DI+ K+ P Y +S+LK + + SLS
Sbjct: 163 GIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGKLESLSE-EE 221
Query: 67 VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKG 126
+ V I ++PT ++LGY L P E L +S+ + N+++ +
Sbjct: 222 INTVKNLGIIDLPTAKDLGYSWDAPLILEPGETAAKEQLNYFCDSL-----IYNYQEQRN 276
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFF 184
P T+ LSP KFG + R +Q Y+N + Q + WR+F+
Sbjct: 277 YPGI---NGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFY 333
Query: 185 YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ P + K W N+++ AW E +TGYP +DA M QL + GWMH+
Sbjct: 334 QHCMYFFPELATGPYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNR 393
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPV 304
R VA FLT+ D+ ++W+ G F + LID D + NNG W W + S + RI++P
Sbjct: 394 CRMIVASFLTK-DLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPA 452
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
S +KYDP+G YIR ++P + + EY+ PL + Y P+V H
Sbjct: 453 SQAQKYDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAHSCG-------YLQPIVDHKQQ 505
Query: 365 SKECKRK 371
+E K +
Sbjct: 506 QREFKER 512
>gi|365901755|ref|ZP_09439584.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
gi|365417509|emb|CCE12126.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
Length = 480
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 182/381 (47%), Gaps = 33/381 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNG-GKPPLT--YQSFLKLAGQPLWASSPLPVSLSSLPPV 67
GIE S L +PA + K+G G T ++ L + P +PLP SLPPV
Sbjct: 122 GIESRSFPDDLLVDPAMLRAKDGRGLRVFTPFWKRVLAMGDPP----APLPAP-RSLPPV 176
Query: 68 GDVGYFEISEV---PTVEELGYKGYGQEELSPFRGGESEALKKLRESI--SDKEWVANFE 122
+ + ++ PT + + G + P GE+ A ++L + + K + A+ +
Sbjct: 177 AGIASLAVEDLQLEPTRPD--WAGGLRARWQP---GEAAAQQRLATFLGQTAKTYAADRD 231
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRD 182
+P D AT+ L+P+L+FG + R + + + +L WR+
Sbjct: 232 RPDLD-------ATSHLAPHLRFGEIGPRQVWHAARFAASEHPAQAAGIDKFLSELGWRE 284
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F + + P+ PW +D LA+W+ TGYP +DA M QL G MH
Sbjct: 285 FSRQLLYDRPDLATCNLQTSFDDFPWRDDAPALASWQRGETGYPIVDAGMRQLWHSGTMH 344
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIY 301
+ R VA FL + + + W G F L+D+D A N W W++ C + Y R++
Sbjct: 345 NRVRMVVASFLVK-HLLIDWRAGEQWFWDTLVDADPANNPAGWQWVAGCGADAAPYFRVF 403
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW-TAPLTIQTRAKCIIGRDYPAPVVS 360
+PV G+K+DP+G Y+R ++P L +P I++PW APL + + A +GR YPAP+V
Sbjct: 404 NPVLQGEKFDPDGAYVRRWVPGLAKLPAPLIHQPWRAAPLELAS-AGIALGRTYPAPIVD 462
Query: 361 HDSASKECKRKLGEAYALNQK 381
H K + + AYA ++
Sbjct: 463 H----KRARERALAAYATVRR 479
>gi|31322268|gb|AAP22940.1| cryptochrome 1 [Arvicanthis ansorgei]
Length = 155
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 92/129 (71%)
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGN 315
GD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+ Y PV FG++ DPNG+
Sbjct: 1 GDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGD 60
Query: 316 YIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
YIR +LPVL+ P +YIY+PW AP +Q AKC+IG +YP P+V+H AS+ ++ +
Sbjct: 61 YIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGLNYPKPMVNHAEASRLNIERMKQI 120
Query: 376 YALNQKLNG 384
Y + G
Sbjct: 121 YQQPSRYRG 129
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 165/367 (44%), Gaps = 23/367 (6%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTY----QSFLKLAGQPLWASSPLPVSLSSLPP 66
GI + L P DI+ K+ P Y +S+LK + + SLS
Sbjct: 163 GIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGKLESLSE-EE 221
Query: 67 VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKG 126
+ V I ++PT ++LGY L P E L +S+ + N+++ +
Sbjct: 222 INTVKNLGIIDLPTAKDLGYSWDAPLILEPGETAAKEQLNYFCDSL-----IYNYQEQRN 276
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFF 184
P T+ LSP KFG + R +Q Y+N + Q + WR+F+
Sbjct: 277 YPGI---NGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFY 333
Query: 185 YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ P + K W N+++ AW E +TGYP +DA M QL + GWMH+
Sbjct: 334 QHCMYFFPELATGPYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNR 393
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPV 304
R VA FLT+ D+ ++W+ G F + LID D + NNG W W + S + RI++P
Sbjct: 394 CRMIVASFLTK-DLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPA 452
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
S +KYDP+G YIR ++P + + EY+ PL + Y P+V H
Sbjct: 453 SQAQKYDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAHSCG-------YLQPIVDHKQQ 505
Query: 365 SKECKRK 371
+E K +
Sbjct: 506 QREFKER 512
>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
Length = 476
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 148/297 (49%), Gaps = 18/297 (6%)
Query: 75 ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKP 134
+ ++PT ++LGY L P GE+ A K+L E S + +++ + P+
Sbjct: 187 VIDLPTAKKLGYAWENPLLLDP---GETAAKKRLEEFCSSA--INEYQEQRNFPAV---D 238
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ--LLWRDFFYTVAFGTP 192
T+ LS LKFG + R ++ +VY+N + + Q L WR+F+ + P
Sbjct: 239 GTSRLSAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFP 298
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ + PW N+++ AW E +TGYP +DA M QL + WMH+ R VA F
Sbjct: 299 ELAEGSYRKDFRSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMIVASF 358
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDP 312
LT+ D+ ++W+ G F + L D D + NNG W W + S + RI++P S +K+DP
Sbjct: 359 LTK-DLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKPLRIFNPASQAQKFDP 417
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECK 369
G YIR +LP L+ + E++ + + R +C YP P+V H E K
Sbjct: 418 EGEYIRQWLPELRSVDTEFLI---SGKIPSLERYQC----GYPEPIVDHKKRQAEFK 467
>gi|428314222|ref|YP_007125199.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
gi|428255834|gb|AFZ21793.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
Length = 478
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 171/385 (44%), Gaps = 30/385 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVSL 61
V D + GIEV L P +I K+ +P Y F K + Q A
Sbjct: 113 VSDALTQKGIEVHHHWDQLLHAPEEIHSKSQ-EPYTVYTPFWKNWSNQAKMAPVDTLHQA 171
Query: 62 SSLPPVGDVGYFEISEV--PTVEELGYKGYGQEELSPFRGGESEALKKLRE----SISDK 115
L P + + PT ++LG+ + E L+ + GE A KL E +I++
Sbjct: 172 EGLTPEEQETAQQAGAIALPTAKDLGFV-WDNELLT--QPGEEAAQAKLAEFSTHAITEY 228
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
E NF KG T+ LS LKFG + R + +N + +
Sbjct: 229 EEQRNFPAIKG---------TSELSAALKFGAIGIRTVWAATIAALKNSRSDETQASIQA 279
Query: 176 GQ--LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
Q L WR+F+ + P K PW N+ +L AW E +TGYP +DA M
Sbjct: 280 WQKELAWREFYQHALYHFPELADGPYRDTFKDFPWDNNPQLFQAWCEGKTGYPIVDAAMR 339
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QL GWMH+ R VA FLT+ D+ ++W+ G F + L D+D + NNG W W + S
Sbjct: 340 QLNTLGWMHNRCRMIVASFLTK-DLLINWQWGEKYFLQKLYDADLSANNGGWQWSASSGM 398
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
+ RI++P S KK+DP G YIR +LP L+ + EY+ PL +
Sbjct: 399 DPKPLRIFNPASQAKKFDPEGEYIREWLPELRSVDTEYLISGDIPPLERH-------ALN 451
Query: 354 YPAPVVSHDSASKECKRKLGEAYAL 378
YPAP+V H + K + + A+
Sbjct: 452 YPAPIVDHKQQQRLFKERYQQQKAM 476
>gi|244539057|dbj|BAH83100.1| deoxyribodipyrimidine photolyas [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 477
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 155/302 (51%), Gaps = 31/302 (10%)
Query: 91 QEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSS 150
E F GE AL L S K + ++ PS Y +T+ LSPYL G +S
Sbjct: 194 NESSQEFPLGEESALNLLEIFCSTK--ITSYATQTNLPSLY---STSYLSPYLAVGIISP 248
Query: 151 RYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFF-YTVA------FGTPNFDRMKGNRIC 203
R L + Y N+ ++ + VS QL+WR+F+ +T+A G P D
Sbjct: 249 RQCLNTLLNHYPNLLEN-NIAVSWFNQLIWREFYNHTLAKYPFLCMGKPYIDWTNN---- 303
Query: 204 KQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWE 263
I W+ D+E L AW+ TGYP IDA M QL GWMH+ R A FL + D+ + W
Sbjct: 304 --IVWNTDEEHLIAWQNGYTGYPIIDAGMRQLNSTGWMHNRIRMITASFLVK-DLLIDWR 360
Query: 264 KGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLP 322
G F L+D + A+NNGNW W+S + + + Y R ++P + GKK DPNG++IR +LP
Sbjct: 361 IGEKYFMLHLLDGNLALNNGNWQWISSTGNNSWPYFRSFNPTTQGKKIDPNGDFIRKWLP 420
Query: 323 VLKDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQ 380
L ++P +YI+ P W ++ K DYP P++ H+ A ++ +A ++
Sbjct: 421 ELNEVPSKYIHNPHDWAQ----HSKYKI----DYPLPIIDHNEARQKMLMAFKKAKKCSK 472
Query: 381 KL 382
++
Sbjct: 473 RI 474
>gi|398904477|ref|ZP_10652320.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM50]
gi|398175856|gb|EJM63596.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM50]
Length = 482
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 32/365 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSL-PPVGD 69
GI+ + + LF P ++ + G + + F K+ + L AS P V+ ++ P+G
Sbjct: 121 GIDFYRYLDQLLFKPGTVLTRTGTYFQV-FSQFRKVCYERLHASLPRLVTAPAIQAPLGI 179
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPS 129
S+ P G+ + + GE+EA ++L E+ +D + + + + P+
Sbjct: 180 A-----SDEPPSRVEGFDTPSDSLRALWPAGEAEARRRL-ETFTDAQ-IDYYHSERDFPA 232
Query: 130 AYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDFFY 185
KP T+ LS Y+ G +S R QCL Q+ + V+ + +LLWR+F+
Sbjct: 233 ---KPGTSQLSAYITAGVISPR---QCLHAALQSNQGEFESGKVGAVTWINELLWREFYK 286
Query: 186 TVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ G P R + R + + W + E L AW++ RTG P IDA M QL + GWMH+
Sbjct: 287 HILVGYPRVSRHRAFRPETEALAWRDAPEDLKAWQQGRTGLPIIDAAMRQLLETGWMHNR 346
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSP 303
R VA FL++ ++ + W +G F R LID D A NNG W W S + + Y RI++P
Sbjct: 347 LRMVVAMFLSK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNP 405
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDYPAPVVSHD 362
+S +K+D G +I+H+LP + M K+ ++ + R + G DYP+P+V+
Sbjct: 406 LSQSEKFDAEGVFIKHWLPQINGMNKKDLHN--------RARLDGLFGVTDYPSPIVNL- 456
Query: 363 SASKE 367
S S+E
Sbjct: 457 STSRE 461
>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
Length = 477
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 157/284 (55%), Gaps = 17/284 (5%)
Query: 101 ESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS--SRYFYQCLT 158
E+ A +L E + ++ + ++ + + P+ K + LSPYL FG +S S ++
Sbjct: 198 EAAAHARLDEFVMNE--LQDYREGRNFPA---KQNVSRLSPYLHFGQISPNSAWYRAAEA 252
Query: 159 DVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSND-DELLAA 217
+ N ++ + + +L WR+F Y + + P PW+N+ DE L+A
Sbjct: 253 GAFINNEQSLD---TFMSELGWREFSYYLLYHWPKLPTENLQTRFDLFPWANNTDEDLSA 309
Query: 218 WREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSD 277
W++ +TGYP +DA M +L G+MH+ R V FL + ++ +HW +G + F L+D+D
Sbjct: 310 WQQGKTGYPLVDAGMRELYSTGYMHNRVRMVVGSFLVK-NLLIHWHRGEEWFWDCLVDAD 368
Query: 278 WAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW 336
A N+ +W W++ C + + RI++P++ +K+D G+YIR ++P LKDMP++YI+ PW
Sbjct: 369 LASNSASWQWIAGCGADAAPFFRIFNPITQSEKFDKQGSYIRRYVPELKDMPEKYIHAPW 428
Query: 337 TAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQ 380
AP + A IG +YP PVV K + + EA+A+ +
Sbjct: 429 LAPAEVLAVAGVNIGINYPEPVVD----IKVSRARALEAFAVTK 468
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 151/297 (50%), Gaps = 15/297 (5%)
Query: 90 GQEEL-SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
G EEL SP G S AL+ +S D ++ + P+ +P T+ LSPYLKFG +
Sbjct: 197 GWEELWSPGEAGASGALRTFLDSHVD-----SYGNGRDFPA---QPNTSRLSPYLKFGEI 248
Query: 149 SSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW 208
S R + + Q+ S + ++ WR+F + P N + PW
Sbjct: 249 SPRQIWWTAQNTKQSNPDEGSSIDKFLSEIGWREFCNHLVAQFPAMPDKAWNPKFEYFPW 308
Query: 209 SNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDV 268
+ L+AW++ TGYP IDA M +L + G+MH+ R VA FLT+ + +HW G
Sbjct: 309 QSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASFLTK-HLLMHWRVGEQW 367
Query: 269 FDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDM 327
F L+D+D A N +W W+ S Y RI++P++ G+K+D G Y R ++P L ++
Sbjct: 368 FWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFDKAGMYTRRWVPELAEL 427
Query: 328 PKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
P +Y+Y+PW AP A +G YP P+V H +A + EAYA + ++
Sbjct: 428 PDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTARESAL----EAYATLKNIDA 480
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 172/385 (44%), Gaps = 31/385 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ D GI+ + + + D I+ P Y F K W+S P +
Sbjct: 113 ILDILKDKGIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKN-----WSSKPKAKPVE 167
Query: 63 SLPPVGDVGYFE--------ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD 114
+L + E + +PT ++LG+ ++P GE+ A KL E +
Sbjct: 168 TLQNAEGLTESEQELAQKAGVKTLPTAKDLGFFWDADLIIAP---GEAAAQAKLEEFTAK 224
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
+ +++ + P+ T+ LS LKFG + R +Q + +N + +
Sbjct: 225 A--ITEYQEQRNFPAV---DGTSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAIR 279
Query: 175 VGQ--LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIM 232
Q L WR+F+ + P K PW ++E AWRE +TGYP +DA M
Sbjct: 280 TWQQELAWREFYQHAMYNFPELADGAYRETFKNFPWETNEEHFQAWREGKTGYPIVDAAM 339
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSS 292
Q+ + GWMH+ R VA FLT+ D+ ++ + G F + LID D + NNG W W + S
Sbjct: 340 RQMNESGWMHNRCRMIVASFLTK-DLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASSG 398
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
+ RI++P S +K+DP+ YIR ++P L+ M EY+ PL + +G
Sbjct: 399 MDPKPLRIFNPASQSQKFDPDAEYIRRWVPELRSMDTEYLVTGKITPLE-----RHAVG- 452
Query: 353 DYPAPVVSHDSASKECKRKLGEAYA 377
Y P+V H + K++ + A
Sbjct: 453 -YVKPIVDHQKQQQLFKQRYQQQKA 476
>gi|448666718|ref|ZP_21685363.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
gi|445771849|gb|EMA22905.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
Length = 465
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 147/300 (49%), Gaps = 16/300 (5%)
Query: 65 PPVGD-VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEK 123
PP D + + +PT+ +LG+ + E G EA L + + E V +E+
Sbjct: 161 PPSADELADVDGDALPTLADLGFD---EPEADVPAAGTDEARALLDDFLD--ENVYEYEE 215
Query: 124 PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQLLWRD 182
+ P+ T+ LS +LKFG + R Y D + V QL WR+
Sbjct: 216 RRDFPA---DECTSRLSAHLKFGTIGIREVYDRTEDAKEGTGGDRRESVREFQSQLAWRE 272
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ V F P+ I W ND+ELL AW++ TGYP +DA M QLR+ +MH
Sbjct: 273 FYTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGETGYPIVDAGMRQLREEAYMH 332
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIY 301
+ R VA FLT+ D+ V W G + F L+D D A +NG W W + + Q Y RI+
Sbjct: 333 NRVRMIVASFLTK-DLLVDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIF 391
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P++ G+ YDP+ YI+ ++P L+D E I++ W Q R +YP PVV H
Sbjct: 392 NPMTQGEDYDPDAEYIKEYVPELRDAAPEVIHD-WNDCSLTQRRNAAP---EYPDPVVDH 447
>gi|365838261|ref|ZP_09379611.1| deoxyribodipyrimidine photo-lyase [Hafnia alvei ATCC 51873]
gi|364560222|gb|EHM38167.1| deoxyribodipyrimidine photo-lyase [Hafnia alvei ATCC 51873]
Length = 476
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 175/375 (46%), Gaps = 32/375 (8%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A T GI F L P ++ +G Y+ F L + V P
Sbjct: 123 AGTCGIHSFDDA--LLLPPGSVVTGSGE----MYKVFTPFRNAFLQRLTHSDVRSLPAPK 176
Query: 67 VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKG 126
D + E+ ++ Y G + + F GE AL++LR + +E V ++ + +
Sbjct: 177 TRD----QACEMSEIKPFDYPQQGLDSVL-FPTGEEAALQRLR--VFCREHVQDYAQQRD 229
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY----QNVKKHTSPPVSLVGQLLWRD 182
P+ T+VLSPYL G LS R QCL + ++ S + +L+WR+
Sbjct: 230 IPAV---DGTSVLSPYLAVGVLSPR---QCLNRLLAECPDTLEDRESGAFVWLNELVWRE 283
Query: 183 FFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
F+ + P R K + WS D E L AW++ +TGYP +DA M QL GWM
Sbjct: 284 FYRHLLVAYPKLCRHKPFIAWTDHVRWSGDIEHLTAWQQGKTGYPIVDAAMRQLNHTGWM 343
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRI 300
H+ R VA FL + D+ ++W G F LID D A NNG W W + S + Y RI
Sbjct: 344 HNRLRMIVASFLVK-DLLINWRAGECYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRI 402
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++P + G+++D G++IR ++P L D+P I+ P + +C + DYP P+V
Sbjct: 403 FNPTTQGERFDKKGDFIRRWIPELADVPDSDIHHPHQWAMK-----QCRV-LDYPQPLVD 456
Query: 361 HDSASKECKRKLGEA 375
H A K+ + +A
Sbjct: 457 HALARKQTLQAFEDA 471
>gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 470
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 134/268 (50%), Gaps = 12/268 (4%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +L+ I K +A + K + P + T+ LS YL+ G +S R +Q L
Sbjct: 197 GEEAANTRLKNFI--KRDLAEYAKARDIPDS---DQTSHLSRYLRTGEISIRTVWQALQQ 251
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
K T +L WRDF+ + PN + I W N+ E W+
Sbjct: 252 T-----KPTEGRAIFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKQWQ 306
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D A
Sbjct: 307 EGKTGYPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRYGEKYFQQMLIDYDPA 365
Query: 280 INNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N W W S + Y RI++P + +K+DP+G +IR ++ L ++P ++I++P
Sbjct: 366 SNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGKFIRKYVEELSNLPDKFIHQPEKM 425
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASK 366
+ Q I+G DYP P+V H K
Sbjct: 426 SESQQKEHNLILGDDYPLPIVDHKERRK 453
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 168/360 (46%), Gaps = 30/360 (8%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDV 70
G+ + L P +++ NGG Y+ F + W S P LS + +GD
Sbjct: 124 GVAFHTCKDAVLHQPQEVLTGNGGP----YRVFTPYSKN--WLSLPKAQPLSKVRTLGDA 177
Query: 71 GYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSA 130
+I +P + + P G +A + ++ D + +E+ + PS
Sbjct: 178 PSPKIKSLPLPTVVHWHLPEPTATLPTPG--EKAARDRMKTFVDSVRLPRYEETRNFPSV 235
Query: 131 YLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG------QLLWRDFF 184
P T+ LSP L++G +S R Y Q + + P + G +L WR+F+
Sbjct: 236 ---PGTSQLSPDLRYGLISIRELYH---RCQQALAQAGGQPAAQSGINTYIKELAWREFY 289
Query: 185 YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
V P N + + W D LAAW+E RTG+P +DA M QL GWMH+
Sbjct: 290 MAVLHFYPEVLETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGWMHNR 349
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSP 303
R V+ FLT+ D+ VHW +G F +LL+D + A NNG W W + + + + RI +P
Sbjct: 350 VRMIVSMFLTK-DLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRIQNP 408
Query: 304 VSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDS 363
+ K+YDP G YI+ ++P LKD+P E + P T L + + YP P+V H +
Sbjct: 409 WTQTKRYDPEGKYIKTWVPELKDVPAEMFFAPPTNGLP--------LAKGYPLPIVDHAT 460
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 188/410 (45%), Gaps = 55/410 (13%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLT-YQSFLKLAGQPLWASSPLPV 59
+ V + AGI+V + L P +I ++G K P T Y F K W S P
Sbjct: 111 LSVSNALQQAGIKVQNFWDQVLHAPDEI--RSGTKTPYTIYTPFWKK-----WNSKPKAQ 163
Query: 60 SLSSLPPVGDVGYFE------------------ISEVPTVEELGYKGYGQEELSPFRGGE 101
+ +LP + Y E I VPT LG+ + P GE
Sbjct: 164 PVETLP----ITYLELMTGLTTEEQELANEAGAIETVPTASSLGFIWENPLVIEP---GE 216
Query: 102 SEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC---LT 158
A +KL E D+ + ++ + P+ T+ LS LKFG + R +Q +
Sbjct: 217 DAAQQKL-EEFCDRA-IYQYQGQRNSPAIN---GTSQLSAALKFGAIGIRTVWQATQIVM 271
Query: 159 DVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAW 218
D + + +TS + ++ WR+F+ + P K PW ND++L AW
Sbjct: 272 DTCHSEEAYTSIR-TWQQEIAWREFYQHAMYNFPELADGPYRPAFKDFPWDNDEKLFQAW 330
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
+TGYP IDA M QL + GWMH+ R VA FLT+ D+ ++W+ G F + LID D
Sbjct: 331 CRGKTGYPIIDAAMRQLNQTGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQKLIDGDL 389
Query: 279 AINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + S + RI++P + +K+DP G YIRH++P L+ + + +
Sbjct: 390 CANNGGWQWSASSGMDPKPLRIFNPATQAQKFDPEGEYIRHWVPELRRVDTKVLLTG--- 446
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSE 388
I + + ++ YP+P+V H+ E +RK E Y QK+ SE
Sbjct: 447 --NISSLERRLL--HYPSPIVDHN----EQQRKFRELYT-QQKIKTSDSE 487
>gi|189346874|ref|YP_001943403.1| deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
Length = 473
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 181/386 (46%), Gaps = 29/386 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK---LAGQPLWASSPLP 58
++K GI S L+ P ++ K+ G P + F + L+ PLP
Sbjct: 109 RLKHKLREQGITAESYNGSMLWEPWEV-HKSDGTPYKVFTPFYRKGCLSAASPRMPLPLP 167
Query: 59 VSLSS-LPPVGDVGYFEISEVPTVEELGYKGYGQEELSP-FRGGESEALKKLRESISDKE 116
V L PP + + +P + +L P + GE+ AL++L +I K
Sbjct: 168 VKLDCPSPPEESLPLEALGLLPRIR-------WDRQLEPHWTIGENGALERL--AIFLKH 218
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + + P+ +P + LSP L FG +S + +
Sbjct: 219 GLPGYREGRDFPA---RPNVSRLSPSLHFGEISPNQAWHGAIAAGSGIDLD-----HFQS 270
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F Y++ + P + + PW + L W++ TGYP +DA M +L
Sbjct: 271 ELAWREFSYSLLYHNPGLPEKNLQKSFDRFPWEENPAALMRWQQGLTGYPIVDAGMRELW 330
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
+ G+MH+ R FL + ++ +HW +G F L D+D AIN+ +W W++ C +
Sbjct: 331 QTGYMHNRIRMVAGSFLVK-NLLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAA 389
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+D +G+Y R +LP L +P Y++ PW AP+++ A G+ YP
Sbjct: 390 PYFRIFNPVTQGQKFDADGSYTRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYP 449
Query: 356 APVVSHDSASKECKRKLGEAYALNQK 381
P+V K +R+ EAYAL +
Sbjct: 450 EPIVD----LKSSRRQALEAYALTRN 471
>gi|339485727|ref|YP_004700255.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida S16]
gi|338836570|gb|AEJ11375.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida S16]
Length = 480
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 178/367 (48%), Gaps = 31/367 (8%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLP-PVG 68
+ I+ S + LF P I+ ++G +Q F + L L SL +L +
Sbjct: 120 SSIQAHSHLDQLLFRPGTILTRSGD----YFQVFSQFKKSCL---EHLHRSLPALARQIK 172
Query: 69 DVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
+S P + + G++ Q + GE+EA +L + E + ++++ +
Sbjct: 173 RQAPLHVSSDPIPQHVDGFEKPAQALRDHWPAGEAEAKARLTRFLD--ETIDDYQQLRDL 230
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDF 183
P+ KP T+ LS YL G +S R QCL + + +S + + +LLWR+F
Sbjct: 231 PA---KPGTSQLSAYLAAGMISPR---QCLHGALASNRGEFDSGSSGVQTWINELLWREF 284
Query: 184 FYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
+ + G P R + R + +PW + L AW + RTG+P IDA M QL GWMH
Sbjct: 285 YKHILTGYPQVSRHRAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMH 344
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIY 301
+ R VA FL++ ++ + W KG F R LID D A NNG W W S + Y RI+
Sbjct: 345 NRLRMIVAMFLSK-NLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIF 403
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+PVS +++DP G +IRH+LP L+ + ++ I+ P + A Y +P+V
Sbjct: 404 NPVSQSQRFDPQGRFIRHWLPELQGVDEKAIHFPVKS-------ADLFARYSYHSPIVDL 456
Query: 362 DSASKEC 368
DS+ +
Sbjct: 457 DSSRQRA 463
>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
Length = 465
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 149/307 (48%), Gaps = 16/307 (5%)
Query: 65 PPVGD-VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEK 123
PP D + + +PT+ +LG++ + E G EA L + + E V +E+
Sbjct: 161 PPSADTLADVDGDALPTLADLGFE---EPEADVPAAGTEEARALLDDFLD--ENVYEYEE 215
Query: 124 PKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV-SLVGQLLWRD 182
+ P+ T+ LS +LKFG + R Y + V QL WR+
Sbjct: 216 RRDFPA---DECTSRLSAHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWRE 272
Query: 183 FFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
F+ V F P+ I W ND+ELL AW++ TGYP +DA M QLR +MH
Sbjct: 273 FYTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMH 332
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIY 301
+ R VA FLT+ D+ + W G + F L+D D A +NG W W + + Q Y RI+
Sbjct: 333 NRVRMIVASFLTK-DLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIF 391
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+P++ G+ YDPN YI+ ++P L+D E I++ W Q R+ +YP PVV H
Sbjct: 392 NPMTQGEDYDPNAEYIKEYVPELRDAAPEIIHD-WNDCSLTQRRSAAP---EYPDPVVDH 447
Query: 362 DSASKEC 368
+E
Sbjct: 448 SERREEA 454
>gi|386080190|ref|YP_005993715.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis PA13]
gi|354989371|gb|AER33495.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis PA13]
Length = 475
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+ S F GE A+K+LRE K+ V ++ K + P+ +T+ LS YL G LS R
Sbjct: 200 DTSLFPPGEQAAVKRLREFA--KQAVLDYAKQRDLPAL---DSTSRLSVYLSTGVLSPR- 253
Query: 153 FYQCLTDVYQNVKK--HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIP--- 207
QCL + K +SP + +L+WR+F+ + P R+CK P
Sbjct: 254 --QCLHRILHEQPKALESSPAAVWINELIWREFYRHLIVAHP--------RLCKHQPFVH 303
Query: 208 ------WSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVH 261
W + AW+ +TGYP +DA M Q++ GWMH+ R A FL + D+ +
Sbjct: 304 WTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVK-DLLID 362
Query: 262 WEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHF 320
W +G F + LID D A NNG W W S + Y RI++P + G+++D G +IR +
Sbjct: 363 WREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEFIRRY 422
Query: 321 LPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE 367
LP LK++P I++P Q K DYPAP+V H A K+
Sbjct: 423 LPELKEVPDSDIHQPH------QWAQKNNKKLDYPAPIVEHKDARKK 463
>gi|320166331|gb|EFW43230.1| photolyase [Capsaspora owczarzaki ATCC 30864]
Length = 559
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 12 IEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLA---GQPLWASSPL--PVSLSSLPP 66
+E + V+HTL++ ++ PPLTY FL L G P+ +PL P L+ P
Sbjct: 110 LETSAFVTHTLYDMNMLLVACKNTPPLTYGKFLSLIESIGPPV---APLDAPHRLAERGP 166
Query: 67 VGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVANFEKP 124
G +P++ ELG E +P F GGE+ ++ + D VANF KP
Sbjct: 167 AGQTDA-ATGGIPSLAELGIS----EPHTPLMFHGGETAGQARMHHYLGDLARVANFSKP 221
Query: 125 KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-KHTSPPVSLVGQLLWRDF 183
+ DP+ + +P+++V+SPYL+FGC+S R F+ + VY + T PPVSL+GQL WR+F
Sbjct: 222 ELDPTLFEEPSSSVMSPYLRFGCVSPRRFFFEINKVYIDSGVTPTQPPVSLLGQLYWREF 281
Query: 184 FYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAW 218
FY VA GTPNFDR GN ICKQI W + E LAAW
Sbjct: 282 FYLVAAGTPNFDRAAGNPICKQIQWDVNPEYLAAW 316
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECK 369
YDP G ++R F+P L++ P EYIY PW+APL +Q A CI+G DYP P+V H+ +
Sbjct: 318 YDPEGKFVRRFVPALRNFPSEYIYMPWSAPLEVQREAGCIVGVDYPKPIVDHEQVCRTNM 377
Query: 370 RKLGEAYALNQKLNGQVSEDGLKNLRRK 397
++ +AYA ++ + L R+
Sbjct: 378 ERMRDAYAQQPDAAALMAVSAVSMLTRQ 405
>gi|312900797|ref|ZP_07760094.1| FAD binding domain of DNA photolyase, partial [Enterococcus
faecalis TX0470]
gi|311292278|gb|EFQ70834.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470]
Length = 267
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 133/250 (53%), Gaps = 7/250 (2%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
T+ LS +L+ G LS R +Q L ++ K T +L WRDF+ + P
Sbjct: 20 TSHLSTFLRTGELSIRTIWQELASAPSSLSKET-----FKKELAWRDFYNMIYSTFPQQK 74
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
+ I W+ND E+ A W++ TGYP IDA M QL + GWMH+ R A FL +
Sbjct: 75 EEAIQEKFRYIQWANDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK 134
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNG 314
++ + W G F ++LID D A N G W W S + Y RI++P+ KK+D +G
Sbjct: 135 -NLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDG 193
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGE 374
+I+ ++P LK +P++YI++P +QTR +G +YP P+V + S+ K+
Sbjct: 194 QFIKKYVPELKQVPQKYIHQPNLMNEALQTRYHVHLGENYPKPIVDYASSKKQTLFLYEV 253
Query: 375 AYALNQKLNG 384
+ ++Q++N
Sbjct: 254 SKEIHQEMNN 263
>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|423208514|ref|ZP_17195068.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|404618359|gb|EKB15279.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
Length = 473
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 150/276 (54%), Gaps = 32/276 (11%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE+EAL++L +I ++ V ++ + + P+ T+VLSPYL G +S R QC+
Sbjct: 206 GEAEALRRL--NIFLEQAVLDYGETRDFPAI---AGTSVLSPYLAAGIISPR---QCVAV 257
Query: 160 VYQNV----KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICK----QIPWSND 211
+ Q + + P + +L+WR+F+ + P + NR K +PWS D
Sbjct: 258 LQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPA---LSMNRPFKPETAALPWSWD 314
Query: 212 DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271
+ AAW E RTGYP +DA M L GWMH+ R VA FLT+ D+ +HW G D F
Sbjct: 315 PDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 272 LLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKE 330
LID D A NNG W W + + + Y R+++P + G+++DP G +IR ++ L D+P
Sbjct: 374 RLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEFIRTWVTELADIPPA 433
Query: 331 YIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
Y+++P W L ++ R +DYP P+V H A
Sbjct: 434 YVHQPHDW---LRLKGR------QDYPVPMVDHAVA 460
>gi|390949735|ref|YP_006413494.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
gi|390426304|gb|AFL73369.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
Length = 495
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 178/383 (46%), Gaps = 27/383 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKN-----GGKPPLTYQSFLKLAGQPLWASSPL 57
+K + G+ S S LF P +I + G+P + +F + + L P
Sbjct: 113 IKQALRSDGLRCESHRSTLLFEPWEIASQTRSASKTGQPYRVFSAFWRACVRELSGIRPD 172
Query: 58 PVSLSSLP----PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
P SLP PV + ++ +PT+ + Q + + GES AL + +
Sbjct: 173 PAP-ESLPAGFAPVDGLTVDDLGLLPTIP------WDQGLRATWTPGESAALARATAFLD 225
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
+ + + + P A P T+ LSP+L FG +S R + D + + P S
Sbjct: 226 AR--IGAYSVARDRPDA---PGTSRLSPHLHFGEISPRRLLAMILDRFGD--PAADPAES 278
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD--ELLAAWREARTGYPWIDAI 231
V +L WR+F Y + + P + PW + E L AW+ RTG P +DA
Sbjct: 279 FVRELGWREFSYHLLYHFPRTPVEPLDPRFADFPWRTEGVAERLDAWQRGRTGIPLVDAG 338
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-C 290
M +L GWMH+ R A LT+ ++ + W+ G F L+D+D A N W W + C
Sbjct: 339 MRELWHTGWMHNRVRMVAASLLTK-NLRLPWQVGARWFWDTLVDADLASNTQGWQWTAGC 397
Query: 291 SSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
+ Y R+++PV G+++DP+G Y+R + P L +P +YI++PWTAP I A +
Sbjct: 398 GADAAPYFRVFNPVRQGERFDPDGGYVRRWCPELARLPNQYIHQPWTAPPPILMAADIRL 457
Query: 351 GRDYPAPVVSHDSASKECKRKLG 373
G YP P+V ++ +E G
Sbjct: 458 GCHYPLPIVDLATSRQEALAAWG 480
>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
Length = 499
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 177/387 (45%), Gaps = 35/387 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAS---SPLPV 59
V++ S AG + + +F A+++ G P T + K A S P PV
Sbjct: 133 VRERLSDAGRALQTFKDQVIFERAELL--TGQNKPFTVFTPYKNAWLKQLTSFDLKPFPV 190
Query: 60 S-----LSSLPPVGDVGYFEISEVPTVEELGYK--GYGQEELSPFRGGESEALKKLRESI 112
L+ LPP + ++PT+E+LG+ G+ EL G L I
Sbjct: 191 ETYANRLAPLPPRLN------RQLPTLEQLGFAPGNLGELELPTGMSGAQRLLDDFLSRI 244
Query: 113 SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
+F KG PS LS +L+FG +S R + ++ +++
Sbjct: 245 DSYAERRDFPAAKG-PS--------YLSVHLRFGTVSIRTLARLAHEM--SLQPDGRGAA 293
Query: 173 SLVGQLLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDEL---LAAWREARTGYPWI 228
+ + +L+WRDF++ + P R ++ W E AAW E RTGYP I
Sbjct: 294 TWLSELVWRDFYFMILAHHPRLAAGASFRADYDRLRWEQGPEAEAAFAAWCEGRTGYPLI 353
Query: 229 DAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL 288
DA M+QL + G+MH+ R A FL + D+ V W G F L D D+A NNG W W
Sbjct: 354 DAAMLQLNRTGYMHNRLRMVTASFLVK-DLGVDWRLGERYFAEQLNDYDFAANNGGWQWA 412
Query: 289 SCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAK 347
+ + Q Y RI++PV+ +K+D G +I+ +LP L +P ++I+ PW A
Sbjct: 413 ASTGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAKWIHAPWLAGAQRLAEYG 472
Query: 348 CIIGRDYPAPVVSHDSASKECKRKLGE 374
++G DYPAP+V H A + G+
Sbjct: 473 VMLGEDYPAPIVDHAQARARTLARFGK 499
>gi|386015078|ref|YP_005933356.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
Length = 475
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+ S F GE A+K+LRE K+ V ++ K + P+ +T+ LS YL G LS R
Sbjct: 200 DTSLFPPGEQAAVKRLREFA--KQAVLDYAKQRDLPAL---DSTSRLSVYLSTGVLSPR- 253
Query: 153 FYQCLTDVYQNVKK--HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIP--- 207
QCL + K +SP + +L+WR+F+ + P R+CK P
Sbjct: 254 --QCLHRILHEQPKALESSPAAVWINELIWREFYRHLIVAHP--------RLCKHQPFVH 303
Query: 208 ------WSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVH 261
W + AW+ +TGYP +DA M Q++ GWMH+ R A FL + D+ +
Sbjct: 304 WTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVK-DLLID 362
Query: 262 WEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHF 320
W +G F + LID D A NNG W W S + Y RI++P + G+++D G +IR +
Sbjct: 363 WREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEFIRRY 422
Query: 321 LPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE 367
LP LK++P I++P Q K DYPAP+V H A K+
Sbjct: 423 LPELKEVPDSDIHQPH------QWAQKNNKKLDYPAPIVEHKDARKK 463
>gi|348175729|ref|ZP_08882623.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora spinosa NRRL
18395]
Length = 453
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 147/282 (52%), Gaps = 30/282 (10%)
Query: 98 RGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCL 157
RGGE+ A +++ ++ VA++++ D + AT+ LSPYL FGCLS
Sbjct: 198 RGGETTARQQMLRWF--EQGVADYDEGHDDLAG---DATSRLSPYLHFGCLSP------- 245
Query: 158 TDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD----RMKGNRICKQIPWSNDDE 213
++ + + P + V QL WRDF + + P R +G+R W +D E
Sbjct: 246 VEIVARAGR-SEPERAFVRQLAWRDFHHQMLAARPGCSHLDYRSRGDR------WRDDPE 298
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
AWR+ RTG P +DA M QL + GWMH+ AR A FLT+ +++ W G F LL
Sbjct: 299 AFRAWRDGRTGIPIVDAGMRQLSREGWMHNRARLITASFLTK-TLYLDWRLGAQHFFDLL 357
Query: 274 IDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+D D A N+ NW W++ + + NR+ +P+ ++YDP+GNYIR ++P L +P ++
Sbjct: 358 VDGDVANNDMNWQWVAGTGADTRPNRVLNPMRQAERYDPSGNYIRRYVPELASLPTAALH 417
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375
+P T + R YPAP+V D A+ + G +
Sbjct: 418 DPRRMDPTERDRLG------YPAPLVDVDEANAHFRNTRGRS 453
>gi|445449585|ref|ZP_21444310.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-92]
gi|444756307|gb|ELW80853.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-92]
Length = 480
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 186/370 (50%), Gaps = 35/370 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSISKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P AT+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKLERDFPHI---QATSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKNTQKIKWNHNPEHLTAWQTGETGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVV 359
+G +YP P+V
Sbjct: 455 LGLNYPKPIV 464
>gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J2-071]
gi|404407050|ref|YP_006689765.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2376]
gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J2-071]
gi|404241199|emb|CBY62599.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2376]
Length = 467
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 137/269 (50%), Gaps = 12/269 (4%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GE A +L I K +A+++K + P T+ LS YL+ G +S R +Q L
Sbjct: 193 SGERAANTRLANFI--KHDIADYDKARDFPEL---DKTSHLSRYLRTGEISIRTIWQELQ 247
Query: 159 DVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAW 218
+ + T + +L WRDF+ + PN + I W N+ E AW
Sbjct: 248 ET-----EATEGRATFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAW 302
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
+E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++LID D
Sbjct: 303 QEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQMLIDYDP 361
Query: 279 AINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
A N G W W S + Y RI++P + +K+DP +IR ++ L ++P +YI++P
Sbjct: 362 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIRKYVKELANLPDKYIHQPEK 421
Query: 338 APLTIQTRAKCIIGRDYPAPVVSHDSASK 366
T Q ++G+DYP P++ H K
Sbjct: 422 MSETEQKEYGLLLGKDYPFPLIDHKERRK 450
>gi|343500282|ref|ZP_08738178.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii ATCC 19109]
gi|418480791|ref|ZP_13049846.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342820661|gb|EGU55479.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii ATCC 19109]
gi|384571551|gb|EIF02082.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 471
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 169/366 (46%), Gaps = 28/366 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ + +T GIE S + NP ++ K G ++ F L A PV+++
Sbjct: 114 LSELLATEGIECKSFDDKCILNPGSVVNKQGD----YFKVFTPFKRAYLAAMYRQPVAVT 169
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFE 122
L P G + V Y +E + + ++ LR+ SDK V ++
Sbjct: 170 KLNPQQIRGKLTSNHVADFSSQCDFDYPRESSERYVVETEQIIQALRKFDSDK--VTSYH 227
Query: 123 KPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV-YQNVKKHTSPPVSLVGQLLWR 181
+ P+ T+ LSPYL G LS R QC+ V YQ + +L+WR
Sbjct: 228 SNRDFPAI---DGTSTLSPYLAIGALSVR---QCMARVMYQQSLPLSGGREVWQSELIWR 281
Query: 182 DFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
+F+ +A+ P + K + W N + AW+ TGYP +DA M QL + GW
Sbjct: 282 EFYQHLAYFEPKLSQGKSFTSWGDNLVWLNPTAAIDAWKMGLTGYPIVDAAMRQLNQTGW 341
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNR 299
MH+ R VA FL + D+ V W G F LID D+A NNG W W + + Q Y R
Sbjct: 342 MHNRLRMIVASFLVK-DLHVDWRVGEHYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFR 400
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAP 357
I++P + G+++DP+G +IR ++P L +P +YI++P W + YP P
Sbjct: 401 IFNPTTQGERFDPDGAFIRRWIPELLSVPDKYIHQPHKWGNAKDLS----------YPEP 450
Query: 358 VVSHDS 363
+V H +
Sbjct: 451 IVDHKT 456
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 154/291 (52%), Gaps = 6/291 (2%)
Query: 78 VPTVEELGYKGYGQEELS--PFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
+P + +LG + + +L+ PF+GGE+EA+K+L+ +K+ + +++ +
Sbjct: 194 IPILSDLGLENFEVSQLAVLPFKGGETEAIKRLKSYFWEKDCLKVYKETRNGMLG--GDY 251
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
++ SP+L GCLS RY Y+ + + Y+ + L+ +LLWRDFF A N
Sbjct: 252 SSKFSPWLALGCLSPRYIYEEV-EKYEQERVKNDSTYWLIFELLWRDFFRFTAVKYGNRL 310
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
IPW + + AW E +TGYP IDA M +L+ G+M + R VA FLT+
Sbjct: 311 FYPSGIQNISIPWQENWLIFEAWCEGQTGYPLIDANMRELKTTGFMSNRGRQNVASFLTK 370
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGN 315
++ ++W+ G + F+ LLID D N GNW + + + R ++ K YD G+
Sbjct: 371 -NLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGIGNDARGFRYFNIPKQSKDYDYRGD 429
Query: 316 YIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
Y+RH+LP + + + I+EPW Q + + +G DYPAP+V + K
Sbjct: 430 YLRHWLPEIASIRGDKIHEPWKLSRGEQQQFRVQLGVDYPAPIVDFFKSVK 480
>gi|428774053|ref|YP_007165841.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
gi|428688332|gb|AFZ48192.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
Length = 476
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 171/364 (46%), Gaps = 29/364 (7%)
Query: 25 PADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD-----VGYFEISEVP 79
P D++ K+ P Y F + + + L +P P SSL + + V +P
Sbjct: 135 PGDVLTKSNNTPYTVYGPFWR-SWEKLEKVAPFPAP-SSLISLDENEQKIVDQLGAINLP 192
Query: 80 TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVL 139
E LGY+ G L+P GE AL++L SD + ++ + P+ T++L
Sbjct: 193 KAENLGYEWQGDLILAP---GEKSALERLEYFCSDL--LLYYDDNRNFPAI---DGTSLL 244
Query: 140 SPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP--VSLVGQLLWRDFFYTVAFGTPNFDRM 197
S LKFG ++ R +Q + ++N + + + +L WR+F+ + P +
Sbjct: 245 SAALKFGAIAPRTIWQKTVEEWENCQSDEARENITAWRKELAWREFYQHCLYFFPELAQG 304
Query: 198 KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257
K+ PW ND++ AW E +TGYP +DA M QL + GWMH+ R VA FLT+ D
Sbjct: 305 PYREHFKEFPWENDEKKFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK-D 363
Query: 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317
+ + W G F + L D D A NNG W W + S + RI++P S +K+DP YI
Sbjct: 364 LIIDWRWGEKYFMQKLYDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAQKFDPEAQYI 423
Query: 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYA 377
R +LP + + + P+ Q+ Y P+V H KE +RK YA
Sbjct: 424 RQWLPEISSLDTGDLVTGKILPMEAQSCG-------YVTPIVDH----KEQQRKFKALYA 472
Query: 378 LNQK 381
+K
Sbjct: 473 QVKK 476
>gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
Length = 500
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 122/238 (51%), Gaps = 8/238 (3%)
Query: 139 LSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS---LVGQLLWRDFFYTVAFGTPNFD 195
LSP+L+FG +S R Q L+ V + P V +L WR+F Y + P+
Sbjct: 262 LSPHLRFGEISPR---QILSAVRHAAEAGAVPLVDADKFEAELYWREFSYHLLAEMPDLA 318
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
R PW L AW + TGYP +DA + QL + GWMH+ R VA FLT+
Sbjct: 319 RSNIQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNRVRMVVASFLTK 378
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDPNG 314
+ + W G D F L+D+D A N +W W++ S Y RI++PV+ G+K+DP+G
Sbjct: 379 -HLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPVTQGEKFDPDG 437
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
Y+R F+P L +P I++PWTA A +G YP P+V H +A + R
Sbjct: 438 TYVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAARERALRAF 495
>gi|417860350|ref|ZP_12505406.1| DNA photolyase [Agrobacterium tumefaciens F2]
gi|338823414|gb|EGP57382.1| DNA photolyase [Agrobacterium tumefaciens F2]
Length = 479
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 182/373 (48%), Gaps = 24/373 (6%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKL--AGQPLWASSPLPVS 60
+K S G+ V S H L P+ + K+GG P Y F + G+ A + P S
Sbjct: 113 LKQALSDDGLTVRSFAGHLLHEPSRVQTKSGG-PYRVYTPFWRALEGGEEPHAPADAPKS 171
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
L S + ++ V+ + + E +P GE+ A +KL + I +
Sbjct: 172 LKSPETWPKSQKLDDWKLLPVKPDWARDF-SEIWTP---GENAAREKLDDFIDGA--LKG 225
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+ + P+ K AT++L+P+L G +S + + +++ ++ +L+W
Sbjct: 226 YEEGRDFPA---KDATSMLAPHLALGEISPAAVWHATKGLSRHIA--SNDISRFRKELVW 280
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+F Y + F P D N W D++ AW TGYP +DA M QL K G
Sbjct: 281 REFCYHLLFHFPKLDEKNWNESFDAFGWRQDEKSFKAWTRGMTGYPIVDAGMRQLWKHGT 340
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CSSFFY 295
MH+ R VA FL + + + W KG F L+D+D A N NW W++ S FF
Sbjct: 341 MHNRVRMIVASFLIK-HLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFF- 398
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
RI++P+ G+K+D +G+Y+R F+P L+ + +++I++P+ AP + +A +G+ YP
Sbjct: 399 ---RIFNPILQGEKFDGDGDYVRRFVPELEKLDRKFIHKPFQAPRELLNKAGIELGKTYP 455
Query: 356 APVVSHDSASKEC 368
P+V H A +
Sbjct: 456 QPIVDHTKARERA 468
>gi|433589886|ref|YP_007279382.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|448333098|ref|ZP_21522312.1| DNA photolyase FAD-binding protein [Natrinema pellirubrum DSM
15624]
gi|433304666|gb|AGB30478.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|445623982|gb|ELY77377.1| DNA photolyase FAD-binding protein [Natrinema pellirubrum DSM
15624]
Length = 463
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 127/251 (50%), Gaps = 8/251 (3%)
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG-QLLWRDFFYTVAFGTPN 193
A + LSPYL G + R ++ +TDV V V +L WR+ +Y + TP+
Sbjct: 220 AVSRLSPYLAAGAIGIREVWETVTDVRDGVDGDERRNVDKYAFELTWRELYYHLLAHTPD 279
Query: 194 FDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253
+ +I W ND+ AW+ TGYP +DA M QL + G++H+ R VA FL
Sbjct: 280 LATANYKQFPNEIAWRNDEAEFRAWKRGETGYPLVDAGMRQLDREGYIHNRPRQVVASFL 339
Query: 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPN 313
T+ + + W +G F L+D D A+N GNW W++ + RI+ PV+ KYD
Sbjct: 340 TKH-LLIDWRRGAAHFRERLVDHDPAVNPGNWQWVASTGTDSVDVRIFDPVAQAAKYDDT 398
Query: 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373
G ++R ++P L D P E I E W T+ + + DYPAP+V D A + +R
Sbjct: 399 GAFVREYVPELADAPAEAIVE-WP---TLPAERRAALAPDYPAPIVHRDDAYERAQRVFE 454
Query: 374 EAYALNQKLNG 384
AL ++ +G
Sbjct: 455 R--ALGKRDDG 463
>gi|448622754|ref|ZP_21669403.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753262|gb|EMA04679.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 484
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 164/361 (45%), Gaps = 32/361 (8%)
Query: 18 VSHTLFNPADIIQKNGGKPPLTYQSFLKL-------------AGQPLWASSPLPVSLSSL 64
V +F+P I N G Y F K L + L + SL
Sbjct: 121 VHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPEPYPEPTADDLADAGTLETAAESL 180
Query: 65 PPVGDVGY-FEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEK 123
GD + + ++PT+ +LG++ P +S + RE +S + A+
Sbjct: 181 SD-GDAEFDVAVGDLPTISDLGFE-------EPTAAVQSAGTEAARERLS--AFCADAIY 230
Query: 124 PKGDPSAY-LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS-LVGQLLWR 181
D Y + AT+ LS LKFG + R Y + V V QL WR
Sbjct: 231 RYADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWR 290
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+F+ V P+ + I W +D E LAAW+E +TGYP +DA M QLR+ +M
Sbjct: 291 EFYAHVLREHPSVVTENYKEYEEDIAWRDDAEELAAWKEGKTGYPIVDAGMRQLREEAYM 350
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRI 300
H+ R VA FLT+ D+ W G F L D D A +NG W W + + Q Y RI
Sbjct: 351 HNRVRMIVASFLTK-DLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRI 409
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++P++ G++YDP+G YI+ ++P L D+ I+E W LT R + + DYP P+V
Sbjct: 410 FNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE-WH-DLTDLERER--LAPDYPEPIVD 465
Query: 361 H 361
H
Sbjct: 466 H 466
>gi|429886347|ref|ZP_19367906.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
gi|429226676|gb|EKY32756.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
Length = 469
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 143/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQTRDFPA---QEGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGEISEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FL + D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLIK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>gi|421806773|ref|ZP_16242635.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC035]
gi|410417316|gb|EKP69086.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC035]
Length = 480
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 185/370 (50%), Gaps = 35/370 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D + ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V ++ + P T+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYNVERDSPHI---QGTSKLSPYLNIGILSVR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVV 359
+G +YP P+V
Sbjct: 455 LGLNYPKPIV 464
>gi|398969087|ref|ZP_10682700.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM30]
gi|398142781|gb|EJM31672.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM30]
Length = 481
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 178/360 (49%), Gaps = 31/360 (8%)
Query: 9 TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG 68
+ GI S + LF P ++ K + + F K+ + L S P +L P G
Sbjct: 119 SKGIAFHSYLDQLLFKPGTVLTKTETYFQV-FSQFRKVCYERLHRSMP---ALVKAP--G 172
Query: 69 DVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
I P + G+ + + + GE EA ++L ++ +D + + ++ +
Sbjct: 173 KQAKLNIDSDPVPASVPGFATPSESLRALWPAGEQEAQRRL-DTFADAQ-IDYYQSERDF 230
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVGQLLWRDF 183
P+ KP T+ LS YL G +S R QCL Q+ + V+ + +LLWR+F
Sbjct: 231 PA---KPGTSQLSAYLAAGVISPR---QCLQAALQSNQGEFDSGKVGAVTWINELLWREF 284
Query: 184 FYTVAFGTPNFDRMKGNR-ICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
+ + G P R + R + + W + + L AW+EARTG P IDA M QL + GWMH
Sbjct: 285 YKHILVGYPRVSRHRAFRPETEALAWRDAPDDLTAWQEARTGLPIIDAAMRQLLETGWMH 344
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIY 301
+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + + Y RI+
Sbjct: 345 NRLRMIVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIF 403
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG-RDYPAPVVS 360
+P+S +K+D G +I+H+LP L + K+ ++ P A + G DYPAP+V+
Sbjct: 404 NPLSQSEKFDSEGLFIKHWLPELAGLNKKEVHNP--------ASAGGLFGVADYPAPIVN 455
>gi|253999882|ref|YP_003051945.1| deoxyribodipyrimidine photo-lyase [Methylovorus glucosetrophus
SIP3-4]
gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus glucosetrophus
SIP3-4]
Length = 481
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 20/290 (6%)
Query: 76 SEVPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLK 133
+E+PT+E +G+ E+ G G + + +E ++ + +F KG PS
Sbjct: 186 TEMPTLESMGFARTNLAEMKLPTGMSGGQQLFAEFQERMARYKDARDFPAVKG-PS---- 240
Query: 134 PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN 193
LS +L+FG +S R+ + ++H + + + +L+WRDF++ V P
Sbjct: 241 ----YLSVHLRFGTVSIRHLARTAW------QQHNAGAETWLNELIWRDFYFQVLHHHPQ 290
Query: 194 FDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ ++ I + N L AW E RTGYP +DA M QL + G+MH+ R A F
Sbjct: 291 VAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTASF 350
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYD 311
L + D+ + W G F LID D A NNG W W + + Q + RI++PV+ +K+D
Sbjct: 351 LVK-DLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFD 409
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
G +IR ++P L ++ I+ PW P Q +IG+DYPAPVV H
Sbjct: 410 AQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEH 459
>gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|427424953|ref|ZP_18915065.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|425698270|gb|EKU67914.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
Length = 480
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 187/387 (48%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSF-------LKLAGQPLWASS 55
V+D+ + G E+F T+F P I+ +P + +F L ++G P
Sbjct: 117 VQDFLNQQGKELFLFHDRTIF-PLCSIRNQSQQPYQVFGAFKKACYSKLDISGLP--QCY 173
Query: 56 PLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDK 115
P+P SS P + +E +E+ + GE+ AL++L I D+
Sbjct: 174 PIPEKQSSYP--ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDR 231
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ----NVKKHTSPP 171
+++++ + P+ T+ LSPYL G LS R QCL +++ N
Sbjct: 232 --LSDYKLERDFPNVR---GTSQLSPYLNIGILSIR---QCLQALFRAEHGNFHLTNEGQ 283
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
+ + +L+WR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P IDA
Sbjct: 284 QTWLDELIWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLIAWQTGQTGIPIIDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL K GWMH+ R A FL + ++ + W G F LID D A NNG W W S
Sbjct: 344 GMRQLLKTGWMHNRVRMITAMFLCK-NLLIDWRVGEQWFMEHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DPNG+YIR ++ L + + I+EP++ IQ
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPNGDYIRQWVEELAHLDNKAIHEPYSTKTNIQL----- 457
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+YP P+V KE + K E +
Sbjct: 458 ---NYPKPIVD----LKETRLKAIETF 477
>gi|453328412|dbj|GAC89303.1| deoxyribodipyrimidine photolyase [Gluconobacter thailandicus NBRC
3255]
Length = 483
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 14/232 (6%)
Query: 133 KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP 192
+ T+ LSPYL G +S R ++ + Q H + ++ WR+F F P
Sbjct: 245 REGTSRLSPYLASGAISPRQVWEAI----QKKGAHDEGARIFLSEIGWREFAKYTLFHQP 300
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ + ++PW ++ L AW++ RTG P +DA M QL K GWMH+ AR V F
Sbjct: 301 RLPDVSLGQKFGKMPWRKSEQDLTAWQQGRTGVPVVDAGMRQLWKTGWMHNRARMIVGSF 360
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CSSFFYQYNRIYSPVSFG 307
LT+ + + W +G F L+D+DWA N NW W++ S FF RI++P G
Sbjct: 361 LTK-HLLIDWRQGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFF----RIFNPTRQG 415
Query: 308 KKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
K+DP+G+YIR ++P LK + + ++EPW A RA G+ YP P+V
Sbjct: 416 VKFDPDGDYIRQWVPELKKLSGKDLFEPWNAKEEDLERAGVTFGKTYPRPIV 467
>gi|448583039|ref|ZP_21646508.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445729996|gb|ELZ81588.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 482
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 161/364 (44%), Gaps = 38/364 (10%)
Query: 17 PVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAS--SPLPVSLSSLPPVGDVGYFE 74
PV +F+P I N G Y F K W P P + D E
Sbjct: 120 PVHDAIFHPPGSITTNAGDTYSVYTYFWKK-----WRDRDKPEPYPEPDADDLADANTLE 174
Query: 75 IS--------------EVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+ ++PT+ +LG++ P +S + RE +S + A+
Sbjct: 175 TAAEALADAEFDVAAGDLPTMSDLGFE-------EPSAAVQSAGTEAARERLS--AFCAD 225
Query: 121 FEKPKGDPSAY-LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS-LVGQL 178
D Y + AT+ LS LKFG + R Y + V V QL
Sbjct: 226 AIYRYADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQL 285
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKW 238
WR+F+ V PN I W +D E LAAW+E +TGYP +DA M QLR+
Sbjct: 286 AWREFYAHVLREHPNVVTENYKEYENDIAWRDDAEELAAWKEGKTGYPIVDAGMRQLREE 345
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-Y 297
+MH+ R VA FLT+ D+ W G F L D D A +NG W W + + Q Y
Sbjct: 346 AYMHNRVRMIVASFLTK-DLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPY 404
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
RI++P++ G++YDP+G YI+ ++P L D+ I+E W LT R + + DYP P
Sbjct: 405 FRIFNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE-WH-ELTDLERER--LAPDYPEP 460
Query: 358 VVSH 361
+V H
Sbjct: 461 IVDH 464
>gi|384226623|ref|YP_005618374.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|311087720|gb|ADP67799.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 483
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 45/313 (14%)
Query: 95 SPFRGGESEALKKLRESISDK--EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
S F GE EA+ +L+ K ++ + P D AT++LSPYL G +SSRY
Sbjct: 201 SFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLD-------ATSMLSPYLSAGIISSRY 253
Query: 153 FYQCLTDVYQNVKKHTSPPVSLV------GQLLWRDFFYTVAFGTPNFDRMKGNRIC-KQ 205
+ L +K S P++++ Q+LWR+F+Y + G P R + K+
Sbjct: 254 CLKVL------LKTKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSESLVTWEKE 307
Query: 206 IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
I W N+ + AW+E TG+P IDA M QL + GWMH+ R + FL + ++ ++W +G
Sbjct: 308 IHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVK-NLLINWREG 366
Query: 266 RDVFDRLLIDSDWAINNGNWLW---LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLP 322
F LID D A+NNG W W + C S Y RI++P+ K +D +GN+I+ F+P
Sbjct: 367 EKYFISNLIDGDLALNNGGWQWSASVGCDSV--PYIRIFNPLHQSKTFDESGNFIKKFIP 424
Query: 323 VLKDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQ 380
LK++P +I++P W+ + DYP P++++ + K + +L +
Sbjct: 425 ELKNVPNHHIHQPHEWSKQKNFKI--------DYPNPIINYSESRK-------TSLSLFK 469
Query: 381 KLNGQVSEDGLKN 393
+ ++ ++GLKN
Sbjct: 470 QARLKLHKNGLKN 482
>gi|424059066|ref|ZP_17796557.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
gi|404669804|gb|EKB37696.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
Length = 480
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 193/387 (49%), Gaps = 39/387 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASS-----PL 57
V+DY + G E+F T+F P I+ +P + +F K L S P+
Sbjct: 117 VQDYLNRHGKELFLFHDRTIF-PLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPV 175
Query: 58 PVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
P + +P D E ++ +E+L +E+ + GE AL++L + I +E
Sbjct: 176 PNKQNEVPL--DFLQGENIDLDEIEKLFCSFLSKEQQDLWPVGEQYALEQLDQFI--EES 231
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
V +++ + P+ T+ LSPYL G LS R QCL +++N +H + + GQ
Sbjct: 232 VCHYKVERDFPNI---QGTSKLSPYLNIGILSIR---QCLQALFRN--QHGNFHLVNEGQ 283
Query: 178 ------LLWRDFFYTVAFGTPNFDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
LLWR+F+ + F P+ + + + ++I W+++ E L AW+ +TG P +DA
Sbjct: 284 QTWLDELLWREFYQHILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQMGQTGIPIVDA 343
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-S 289
M QL + GWMH+ R A FL + ++ + W G F + LID D A NNG W W S
Sbjct: 344 GMRQLLQTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCAS 402
Query: 290 CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ Y RI++P++ KK+DP G YIR ++ L + + I+EP++ +K
Sbjct: 403 TGTDAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--------SKTD 454
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAY 376
+G +YP P+V KE + K E +
Sbjct: 455 LGLNYPKPIVD----LKETRLKAIETF 477
>gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
Length = 503
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 122/233 (52%), Gaps = 8/233 (3%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD 195
+ LS +L+FG + R V + + + + +L+WRDF+ + + P
Sbjct: 267 VSYLSTHLRFGTIPVREL------AAYAVHQGGAGAQTWLSELIWRDFYQMILWHHPRVV 320
Query: 196 RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
+I W + L AWRE RTGYP +DA M QL + G+MH+ R VA FLT+
Sbjct: 321 DQAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQLLRSGYMHNRLRMIVASFLTK 380
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNG 314
D+ V W G F L D D A NNG W W + + Q Y RI++PV+ +K+DP G
Sbjct: 381 -DLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPVTQSQKFDPEG 439
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE 367
+IR ++P L +P +I+ PW Q+RA IGRDYPAPVV H A +
Sbjct: 440 RFIRRYVPELARVPDRHIHAPWQMDAATQSRACVQIGRDYPAPVVDHALARER 492
>gi|407789405|ref|ZP_11136506.1| deoxyribodipyrimidine photolyase [Gallaecimonas xiamenensis 3-C-1]
gi|407206763|gb|EKE76713.1| deoxyribodipyrimidine photolyase [Gallaecimonas xiamenensis 3-C-1]
Length = 462
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 23/294 (7%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATT 137
VP + + G +L+ + E AL +R ++++ VA+++ + P+ + T+
Sbjct: 179 VPEFSDSAFDG----QLADWPQDEEAALLAMRRFVTER--VADYKAQRDFPALDI---TS 229
Query: 138 VLSPYLKFGCLSSRY-FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDR 196
LS L G +S R ++ L + V S P + + +L+WRDF+ V + P +
Sbjct: 230 RLSAALSIGLVSVRQCLWRLLHEHQDAVWDDASGPGTWLNELIWRDFYQHVVWHYPLVVK 289
Query: 197 MKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTR 255
+ + I WS D+ AW E RTG+P +DA M QL + GWMH+ R VA FL +
Sbjct: 290 GRAFQADTDAIAWSYDEAAFKAWCEGRTGFPIVDAAMRQLVQTGWMHNRLRMIVASFLVK 349
Query: 256 GDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNG 314
D+ + W G F R LID D+A NNG W W S + Y RI++P GK++DP+G
Sbjct: 350 -DLLIDWRLGEAFFMRHLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTEQGKRFDPDG 408
Query: 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+IR FLP L+ + +Y++EP P + DYP P+V H A ++
Sbjct: 409 RFIRSFLPELQGLDDKYLFEPQRYPGPL----------DYPKPLVDHKQARQKT 452
>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 504
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 162/350 (46%), Gaps = 38/350 (10%)
Query: 44 LKLAGQPL---------------WASSPLPVSLSSLPPVGDVGYFEISEV----PTVEEL 84
L LAG+P + SS + V + P+ D F +S V PT+ EL
Sbjct: 148 LSLAGKPFSVFTPYKNAWLKQLQFNSSDVHVRAYPVEPLAD--RFAVSPVAHVMPTLAEL 205
Query: 85 GYK--GYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPY 142
G+ + Q ++ G + + E I + +F KG PS LS +
Sbjct: 206 GFAPTNFAQLKIPTGMSGGQQLVDNFMERIDKYKQTRDFPAIKG-PS--------YLSVH 256
Query: 143 LKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRI 202
L+FG +S R+ + + + + S + + +L+WRDF++ + P
Sbjct: 257 LRFGTVSIRHLARRACEAAR-IAADASGANTWLAELVWRDFYFMILQHHPRVVHGAFKPD 315
Query: 203 CKQIPWSND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMF 259
I W D L AW + RTGYP +DA M Q+ + G+MH+ R ACFL + D+
Sbjct: 316 YDAIQWETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGYMHNRLRMVTACFLIK-DLG 374
Query: 260 VHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIR 318
+ W +G F LID D + NNG W W S S Q Y RI++P++ +K+D +G +IR
Sbjct: 375 IDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSEKFDTDGRFIR 434
Query: 319 HFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+LP L + + I+ PW A +G +YP PVV HD A K+
Sbjct: 435 RYLPQLAQLGNKQIHAPWLLTKMELDHAGVELGVNYPLPVVQHDVARKQT 484
>gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
Length = 497
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 128 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 186
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 187 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 241
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 242 -LGGYAAERDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 297
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 298 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 357
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 358 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 416
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 417 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 476
Query: 356 APVVSHDSASKECKRKLG 373
P+V++D+A + G
Sbjct: 477 LPIVAYDAARRRALDAFG 494
>gi|414342179|ref|YP_006983700.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
gi|411027514|gb|AFW00769.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
Length = 502
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 14/232 (6%)
Query: 133 KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP 192
+ T+ LSPYL G +S R ++ + Q H + ++ WR+F F P
Sbjct: 264 REGTSRLSPYLASGAISPRQVWEAI----QKKGAHDEGARIFLSEIGWREFAKYTLFHQP 319
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ + ++PW ++ L AW++ RTG P +DA M QL K GWMH+ AR V F
Sbjct: 320 RLPDVSLGQKFGKMPWRKSEQDLTAWQQGRTGVPVVDAGMRQLWKTGWMHNRARMIVGSF 379
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CSSFFYQYNRIYSPVSFG 307
LT+ + + W +G F L+D+DWA N NW W++ S FF RI++P G
Sbjct: 380 LTK-HLLIDWRQGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFF----RIFNPTRQG 434
Query: 308 KKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
K+DP+G+YIR ++P LK + + ++EPW A RA G+ YP P+V
Sbjct: 435 VKFDPDGDYIRQWVPELKKLSGKDLFEPWNAKEEDLERAGVTFGKTYPRPIV 486
>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
Length = 483
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 12/236 (5%)
Query: 134 PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN 193
P T+ LSP+L G +S + + +V T V +L+WR+F Y + F +
Sbjct: 240 PHTSGLSPHLALGEISPARIWHATIGLGDDVS--TDDYVHFRKELVWREFSYHLLFHFAD 297
Query: 194 FDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253
N PW + E L+AW+ +TGYP +DA M QL + G MH+ R VA FL
Sbjct: 298 LASQNWNDRFNDFPWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMHNRVRMIVASFL 357
Query: 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-----CSSFFYQYNRIYSPVSFGK 308
+ D+ + W +G F L+D+D A N +W W++ S FF RI++P++ +
Sbjct: 358 IK-DLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFF----RIFNPITQSE 412
Query: 309 KYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
K+DP+G+YIR F+P L +P I+ P+ AP + +A +G+ YPAP+V H A
Sbjct: 413 KFDPDGDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHKRA 468
>gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
Length = 505
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 152/314 (48%), Gaps = 25/314 (7%)
Query: 70 VGYFEISEVPTVEELGYKGYGQEELSP---------FRGGESEALKKLRESISDKEWVAN 120
+ +F + T + G + +P +R GE A ++L + + +
Sbjct: 181 IAFFPVPHNVTPHVCTLRALGLQPTAPDWASGLRLTWRCGEEAARQRLDAFLEHS--LRD 238
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSR---YFYQCLTDVYQNVKK------HTSPP 171
+ + P+A+ AT+ LSPYL+FG +S R Y Q +K + P
Sbjct: 239 YADMRDLPAAH---ATSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPL 295
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
+ ++ WR+F Y + + P ++ R +PW +D L W+ TGYP +DA
Sbjct: 296 NKFLSEIGWREFSYHLLYHFPPLHQVNFRRQFDSMPWRDDPNALRKWQTGHTGYPLVDAG 355
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M +L GWMH+ R VA FL++ + + W +G F L+D+D A N +W W+S S
Sbjct: 356 MRELWHTGWMHNRVRMVVASFLSK-HLLIDWREGEAWFWDTLVDADEASNPASWQWVSGS 414
Query: 292 -SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
+ Y RI++PV G+K+DP G Y RH++P L M E I+ PWTA A +
Sbjct: 415 GADAAPYFRIFNPVLQGQKFDPQGEYTRHWVPELSKMSAEKIHAPWTASAEQLHDACVSL 474
Query: 351 GRDYPAPVVSHDSA 364
GR YP P+V H +A
Sbjct: 475 GRTYPFPIVDHQAA 488
>gi|15616910|ref|NP_240123.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11133758|sp|P57386.1|PHR_BUCAI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|25291445|pir||A84965 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [imported] -
Buchnera sp. (strain APS)
gi|10038974|dbj|BAB13009.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 483
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 164/311 (52%), Gaps = 45/311 (14%)
Query: 97 FRGGESEALKKLRESISDK--EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
F GE EA+ +L+ K ++ + P D AT++LSPYL G +SSRY
Sbjct: 203 FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLD-------ATSMLSPYLSAGIISSRYCL 255
Query: 155 QCLTDVYQNVKKHTSPPVSLV------GQLLWRDFFYTVAFGTPNFDRMKGNRIC-KQIP 207
+ L +K S P++++ Q+LWR+F+Y + G P R + K+I
Sbjct: 256 KVL------LKTKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSESLVTWEKEIH 309
Query: 208 WSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRD 267
W N+ + AW+E TG+P IDA M QL + GWMH+ R + FL + ++ ++W +G +
Sbjct: 310 WINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVK-NLLINWREGEE 368
Query: 268 VFDRLLIDSDWAINNGNWLW---LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
F LID D A+NNG W W + C S Y RI++P+ K +D +GN+I+ F+P L
Sbjct: 369 HFISNLIDGDLALNNGGWQWSASVGCDSV--PYIRIFNPLHQSKTFDESGNFIKKFIPEL 426
Query: 325 KDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
K++P +I++P W+ + DYP P++++ + K + +L ++
Sbjct: 427 KNVPNHHIHQPHEWSKQKNFKI--------DYPNPIINYSESRK-------TSLSLFKQA 471
Query: 383 NGQVSEDGLKN 393
++ ++GLKN
Sbjct: 472 RLKLHKNGLKN 482
>gi|378768089|ref|YP_005196559.1| deoxyribodipyrimidine photo-lyase [Pantoea ananatis LMG 5342]
gi|365187572|emb|CCF10522.1| deoxyribodipyrimidine photo-lyase [Pantoea ananatis LMG 5342]
Length = 475
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+ S F GE A+K+LRE K+ V ++ K + P+ +T+ LS YL G LS R
Sbjct: 200 DTSLFPPGEQAAVKRLREFA--KQAVLDYAKQRDLPAL---DSTSRLSVYLSTGVLSPR- 253
Query: 153 FYQCLTDVYQNVKK--HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIP--- 207
QCL + K +SP + +L+WR+F+ + P R+CK P
Sbjct: 254 --QCLHRILHEQPKALESSPAAVWINELIWREFYRHLIVAHP--------RLCKHQPFVH 303
Query: 208 ------WSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVH 261
W + AW+ +TGYP +DA M Q++ GWMH+ R A FL + D+ +
Sbjct: 304 WTRNVAWQRNSVHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVK-DLLID 362
Query: 262 WEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHF 320
W +G F + LID D A NNG W W S + Y RI++P + G+++D G +IR +
Sbjct: 363 WREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEFIRRY 422
Query: 321 LPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKE 367
LP LK++P I++P Q K DYPAP+V H A K+
Sbjct: 423 LPELKEVPDSDIHQPH------QWAQKNNKKLDYPAPIVEHKDARKK 463
>gi|167031795|ref|YP_001667026.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1]
gi|166858283|gb|ABY96690.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1]
Length = 475
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 169/334 (50%), Gaps = 24/334 (7%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP-LPVSLSSLPPVG 68
+ I+ S + LF P I+ ++G + + F K + L S P L + P+
Sbjct: 120 SSIQACSHLDQLLFRPGTILTRSGDYFQV-FSQFKKTCLEHLHRSLPALARRVERQAPL- 177
Query: 69 DVGYFEISEVPTVEEL-GYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
+I P + + G++ + + GE+EA +L + E + +++ +
Sbjct: 178 -----QIQSDPIPQHVDGFETPTRALREHWPAGEAEAQARLSRFLD--ETIDEYQQLRDL 230
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDF 183
P+ K T+ LS YL G +S R QCL + + ++ + + +LLWR+F
Sbjct: 231 PA---KHGTSQLSTYLAAGVISPR---QCLHGALASNRGEFDSGSTGVQTWINELLWREF 284
Query: 184 FYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMH 242
+ + G P R + R + +PW + L AW++ RTG+P IDA M QL GWMH
Sbjct: 285 YKHILNGYPQVSRHRAFRAHTEALPWRDAPADLEAWKQGRTGFPIIDAAMRQLLHTGWMH 344
Query: 243 HLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIY 301
+ R VA FL++ ++ + W KG F R LID D A NNG W W S + Y RI+
Sbjct: 345 NRLRMVVAMFLSK-NLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIF 403
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
+PVS +++DP G +IRH+LP L+DM ++ I+EP
Sbjct: 404 NPVSQSQRFDPQGRFIRHWLPELRDMDEKTIHEP 437
>gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
Length = 486
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 117 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 175
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 176 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 230
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 231 -LGGYAAERDRPGI---ASTSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 286
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 287 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 346
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 347 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 465
Query: 356 APVVSHDSASKECKRKLG 373
P+V++D+A + G
Sbjct: 466 LPIVAYDAARRRALDAFG 483
>gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
F6854]
gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|386046246|ref|YP_005964578.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
1/2a str. F6854]
gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|345533237|gb|AEO02678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
Length = 467
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 138/275 (50%), Gaps = 12/275 (4%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+L GE A +L I K VA+++K + P T+ LS YL+ G +S R
Sbjct: 187 DLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISVRT 241
Query: 153 FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
+Q L + + T +L WRDF+ + PN + I W N+
Sbjct: 242 IWQALQE-----NEATEGRAIFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNR 296
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
E AW++ +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++
Sbjct: 297 EFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-DLLIDWRFGEKYFQQM 355
Query: 273 LIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
LID D A N G W W S + Y RI++P + +K+DP G +IR ++ L ++P +Y
Sbjct: 356 LIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKY 415
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
I++P Q ++G+DYP P++ H K
Sbjct: 416 IHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRK 450
>gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e]
gi|386049515|ref|YP_005967506.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404283027|ref|YP_006683924.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|405757582|ref|YP_006686858.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e]
gi|346423361|gb|AEO24886.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404232529|emb|CBY53932.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|404235464|emb|CBY56866.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
Length = 467
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 138/275 (50%), Gaps = 12/275 (4%)
Query: 93 ELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY 152
+L GE A +L I K VA+++K + P T+ LS YL+ G +S R
Sbjct: 187 DLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL---DKTSHLSRYLRTGEISVRT 241
Query: 153 FYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDD 212
+Q L + + T +L WRDF+ + PN + I W N+
Sbjct: 242 IWQALQE-----NEATEGRAIFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNR 296
Query: 213 ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRL 272
E AW+E +TG+P +DA M QL++ GWMH+ R A FLT+ D+ + W G F ++
Sbjct: 297 EFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-DLLIDWRFGEKYFQQM 355
Query: 273 LIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEY 331
LID D A N G W W S + Y RI++P + +K+DP G +IR ++ L ++P ++
Sbjct: 356 LIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKF 415
Query: 332 IYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
I++P Q ++G+DYP P++ H K
Sbjct: 416 IHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRK 450
>gi|187927713|ref|YP_001898200.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
Length = 518
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 20/294 (6%)
Query: 78 VPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
P +E +G+ E++ G G L + + + D +F +G
Sbjct: 207 TPALEAMGFAHTNLSEIALPTGMSGGQALLDEFEDRMDDYHARRDFPAVRG--------- 257
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF- 194
+ LS +L+FG +S R + + + + + + +L+WRDF++ + P+
Sbjct: 258 PSYLSTHLRFGTVSIR---TLAARAHAAMLRGSRGAATWLSELVWRDFYFMILHHRPDLA 314
Query: 195 DRMKGNRICKQIPWSNDD---ELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
D + +I W + D AW+ A+TGYP +DA M+Q+ + G+MH+ R A
Sbjct: 315 DGAAFHPEFDRIRWVDGDTGDARFEAWKGAQTGYPLVDAAMLQIFQSGYMHNRLRMVAAS 374
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKY 310
FL + D+ + W +G F +L D D++ NNG W W + S Q + RI++PV+ +K+
Sbjct: 375 FLIK-DLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQSEKF 433
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
DP G +IR +LP L +P +YI+ PWTAP + A ++G YP P++ H A
Sbjct: 434 DPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEAGVVLGETYPRPIIDHAGA 487
>gi|351729025|ref|ZP_08946716.1| deoxyribodipyrimidine photo-lyase [Acidovorax radicis N35]
Length = 496
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 143/295 (48%), Gaps = 23/295 (7%)
Query: 78 VPTVEELGYKGYGQEELSPFRG--GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
VPT+ LG++ +L G G + I E NF KG PS
Sbjct: 201 VPTLASLGFEATALSQLKLPTGASGAQQLFDDFLGRIERYEDTRNFPAVKG-PS------ 253
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL-VGQLLWRDFFYTVAFGTPNF 194
LS +L+FG +S R L + +P + + +L+WRDF++ + P+
Sbjct: 254 --YLSVHLRFGTISPR----LLARTAHGLMLQGNPGATTWLSELIWRDFYFQILHHHPHV 307
Query: 195 DRMKGNRICKQIPWSND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
I W + D L AAW E RTGYP +DA M Q+ + G+MH+ R VA
Sbjct: 308 VGHSFKPAYDAIQWESGPEADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVAS 367
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKY 310
FL + D+ + W G F L D D A NNG W W S S Q Y RI++PVS +K+
Sbjct: 368 FLVK-DLGIDWRWGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKF 426
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTA-PLTIQTRAKCIIGRDYPAPVVSHDSA 364
DP G +IR LP L +P + ++ PW A P+ +Q A +G YP PVV HD+A
Sbjct: 427 DPEGKFIRRCLPQLAGLPTKALHAPWLARPMELQG-AGVRLGDTYPLPVVEHDTA 480
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 151/313 (48%), Gaps = 22/313 (7%)
Query: 67 VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKG 126
+ V +SE+PT E+LGY L+P GE+ A +L E + +++ +
Sbjct: 179 LATVDQIYVSELPTAEDLGYSWETPLLLAP---GETAAQARLEEFSHSA--IYQYDEQRN 233
Query: 127 DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTS--PPVSLVGQLLWRDFF 184
P T++LS LKFG +S R +Q + +N + + ++ +L WR+F+
Sbjct: 234 FP---FNQGTSLLSAALKFGVISLRAIWQTTVEALENCRSEEARVNVITWQKELAWREFY 290
Query: 185 YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHL 244
+ P ++ K PW N+ E AW + +TGYP +DA M QL+ GWMH+
Sbjct: 291 QHCLYFFPELEQGPYRPAFKNFPWDNNPEHFQAWCQGKTGYPIVDAAMRQLQSTGWMHNR 350
Query: 245 ARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPV 304
R VA FLT+ D+ + W G F + L D D A NNG W W + S + RI++P
Sbjct: 351 CRMIVASFLTK-DLIIDWRWGEKYFMQTLFDGDLASNNGGWQWSASSGMDPKPLRIFNPA 409
Query: 305 SFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
S +K+D YIR +LP + + EY+ T + R +C +YP +V H
Sbjct: 410 SQAQKFDSEAEYIRQWLPEISSIDTEYLV---TGKIPELERYRC----NYPQQIVDH--- 459
Query: 365 SKECKRKLGEAYA 377
K +RK YA
Sbjct: 460 -KIQQRKFKALYA 471
>gi|26987475|ref|NP_742900.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida KT2440]
gi|24982139|gb|AAN66364.1|AE016264_8 deoxyribodipyrimidine photolyase [Pseudomonas putida KT2440]
Length = 480
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 168/333 (50%), Gaps = 22/333 (6%)
Query: 10 AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP-LPVSLSSLPPVG 68
+ I+ S + F P ++ ++G + + F K + L S P L + P+
Sbjct: 120 SAIQAHSHLDQLFFRPGTVLTRSGDYFQV-FSQFKKTCLEHLHRSLPALARRVKRQAPL- 177
Query: 69 DVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDP 128
++G I + VE G + P GE+EA +L + E + ++ + P
Sbjct: 178 NIGSDPIPQ--HVEGFGKTTPALRDHWP--AGEAEAQSRLSRFLD--ETIDDYHHLRDLP 231
Query: 129 SAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKH----TSPPVSLVGQLLWRDFF 184
+ KP T+ LSPYL G +S R QCL + ++ + + +LLWR+F+
Sbjct: 232 A---KPGTSQLSPYLAAGVISPR---QCLHGALAGNRGEFDSGSTGVQTWINELLWREFY 285
Query: 185 YTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHH 243
+ G P R + R + +PW + LAAW + RTG+P IDA M QL GWMH+
Sbjct: 286 KHILSGYPQVSRHRAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHN 345
Query: 244 LARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYS 302
R VA FL++ ++ + W KG F R LID D A NNG W W S + Y RI++
Sbjct: 346 RLRMVVAMFLSK-NLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFN 404
Query: 303 PVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
PVS +++DP G +IRH++P L+++ ++ I++P
Sbjct: 405 PVSQSQRFDPQGRFIRHWVPELQELDEKAIHQP 437
>gi|404399161|ref|ZP_10990745.1| deoxyribodipyrimidine photolyase [Pseudomonas fuscovaginae UPB0736]
Length = 481
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 173/374 (46%), Gaps = 47/374 (12%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQ----SFLKLAGQPLW------ASSPLPVS 60
GI+ S + F P ++ + GG + Q + +L G +PLP+S
Sbjct: 121 GIDFHSHLDQLFFRPGSVLTRTGGYFQVFSQFRKVCYSRLHGALPALVAAPATQAPLPLS 180
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
+P D G+ Q + GE EA ++L ES +D++ +
Sbjct: 181 SDPIPSAVD---------------GFASPAQSLRDLWPAGEKEARRRL-ESFADQQ-IDY 223
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSP----PVSLVG 176
++ + P+ KP T+ LS YL G +S R QCL Q+ + V+ +
Sbjct: 224 YQSERDFPA---KPGTSQLSTYLAAGVVSPR---QCLHAALQSNQGEFDSGNVGAVTWIN 277
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235
+LLWR+F+ + G P R + R + + W N L AW++ RTG P IDA M QL
Sbjct: 278 ELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRNAPRDLEAWQQGRTGLPIIDAAMRQL 337
Query: 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFF 294
GWMH+ R VA FLT+ ++ + W +G F R LID D A NNG W W S + +
Sbjct: 338 LATGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDS 396
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
Y RI++P+S +K+D G +I+H+LP L + K+ ++ P DY
Sbjct: 397 APYFRIFNPISQSEKFDSEGLFIKHWLPELAALNKKDVHNP-------AALGGLFGVADY 449
Query: 355 PAPVVSHDSASKEC 368
P P+V S+ +
Sbjct: 450 PQPIVDLASSRERA 463
>gi|408785938|ref|ZP_11197678.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
gi|408488127|gb|EKJ96441.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
Length = 479
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 142/274 (51%), Gaps = 17/274 (6%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A +KL + I + +E+ + P+ K AT+ LSP+L G +S +
Sbjct: 207 GEDGAREKLSDFIDGA--LKGYEEGRDLPA---KDATSRLSPHLALGEISPATVWHATKG 261
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
+ +++ ++ +++WR+F Y + F P D N W +DD+ AW
Sbjct: 262 LSRHIA--SNDISRFRKEIVWREFCYHLLFHFPELDEKNWNDSFDAFSWRDDDKSFTAWT 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TGYP +DA M QL + G MH+ R VA FL + + + W KG F L+D+D A
Sbjct: 320 RGMTGYPIVDAGMRQLWRHGTMHNRVRMIVASFLIK-HLLIDWRKGEKWFRDTLVDADPA 378
Query: 280 INNGNWLWLS-----CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYE 334
N NW W++ S FF RI++P+ G+K+D +G+Y+R F+P L + ++YI++
Sbjct: 379 SNAANWQWVAGSGADASPFF----RIFNPILQGEKFDGDGDYVRRFVPELARLERKYIHK 434
Query: 335 PWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
P+ AP + T+A +G YP PVV H A +
Sbjct: 435 PFEAPKEVLTKAGITLGETYPNPVVDHGRARERA 468
>gi|421889155|ref|ZP_16320215.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
gi|378965575|emb|CCF96963.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
Length = 522
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 128/232 (55%), Gaps = 13/232 (5%)
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL-VGQLLWRDFFYTVAFGTPNFD 195
+ LS +L+FG +S R L + H S + + +L+WRDF++ + P+
Sbjct: 266 SYLSTHLRFGTVSIR----TLAARAHSAMLHGSRGAATWLSELIWRDFYFMILHHRPDLA 321
Query: 196 -----RMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
R + +RI + + D AAWR+ARTGYP +DA M+Q+ + G+MH+ R A
Sbjct: 322 EGASFRPEFDRI-RWVSGETGDVRFAAWRDARTGYPLVDAAMLQIGQSGYMHNRLRMVAA 380
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKK 309
FL + D+ V W +G F L D D+A NNG W W + S Q + RI++PV+ +K
Sbjct: 381 SFLIK-DLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQSEK 439
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
+DP G++IR +LP L +P Y++ PWTAP + A +G YP P+V H
Sbjct: 440 FDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYPRPIVDH 491
>gi|365880713|ref|ZP_09420069.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
gi|365291224|emb|CCD92600.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
Length = 422
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 171/365 (46%), Gaps = 31/365 (8%)
Query: 22 LFNPADIIQKNGGKPPLTYQSFLKLA---GQPLWASSPLPVSLSSLPPVGDVGYFEISEV 78
L +PA + K+G + P + F K G P + PLP + LPPV + I E+
Sbjct: 74 LVDPATMSGKDG-RGPRVFTPFWKRVLALGDP---AKPLPTPVR-LPPVAGIASLGIHEL 128
Query: 79 ---PTVEELGYKGYGQEELSPFRGGESEALKKLRESISD--KEWVANFEKPKGDPSAYLK 133
PT + + G + P GE A ++LR + + A+ ++P D
Sbjct: 129 ALEPTRPD--WAGGLRTTWQP---GERTAQQRLRGFLESAVSSYAADRDRPDID------ 177
Query: 134 PATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN 193
AT+ LSP+L+FG +S R + + + ++ WR+F + + P+
Sbjct: 178 -ATSRLSPHLRFGEISPRQIWHAARFAAEERPALAKGIDKFLSEVGWREFSRHLLYNNPD 236
Query: 194 FDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253
PW+ DD LAAW+ +TGYP +DA M +L G MH+ R A L
Sbjct: 237 LATRNLQPSFDPFPWTQDDAALAAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLL 296
Query: 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDP 312
+ + + W +G F L+D+D N +W W++ S Y R+++PV G+K+D
Sbjct: 297 VK-HLLIDWRQGEQWFWDTLVDADAGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDA 355
Query: 313 NGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372
NG+Y+R ++P L +P I++PW A A +GR YPAP+V H K + +
Sbjct: 356 NGSYVRRWVPELSRLPAGLIHQPWAAKPLELAEAGVTLGRSYPAPIVDH----KHGRERA 411
Query: 373 GEAYA 377
AYA
Sbjct: 412 LAAYA 416
>gi|160876317|ref|YP_001555633.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
gi|378709517|ref|YP_005274411.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678]
gi|418024064|ref|ZP_12663048.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS625]
gi|160861839|gb|ABX50373.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
gi|315268506|gb|ADT95359.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678]
gi|353536937|gb|EHC06495.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS625]
Length = 499
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 142/281 (50%), Gaps = 15/281 (5%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC-- 156
GE +A + L I K V ++++ + P+ T+ +SPYL G +S R QC
Sbjct: 220 AGEGQAKRILSAFIQQK--VQDYKQDRDFPAI---DGTSSISPYLAIGVVSPR---QCVA 271
Query: 157 --LTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDE 213
L D + + TSP + + +L WR+F+ + P+ + NR + W N+ +
Sbjct: 272 ALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNYNFNRQADHVQWRNNQQ 331
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
AAW E RTGYP +DA M QL + GWMH+ R VA FLT+ + + W G F + L
Sbjct: 332 EFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK-HLLIDWRWGERNFRQKL 390
Query: 274 IDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYI 332
ID D A NNG W W + C Y RI++P+S +K+DP+G++IR +LP L + +
Sbjct: 391 IDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRKYLPELASWGIKQL 450
Query: 333 YEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373
++P TA YP+ +V H +A LG
Sbjct: 451 HQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARALTVLG 491
>gi|406037286|ref|ZP_11044650.1| deoxyribodipyrimidine photolyase [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 480
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 175/353 (49%), Gaps = 28/353 (7%)
Query: 21 TLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSP--LPVSLSSLPPVGDVGYFEISEV 78
TLF P I+ P + +F K Q L P P+ + P V D +F + +
Sbjct: 135 TLF-PVRSIRNQSNLPYQVFGAFKKTCYQRLQHGLPQCYPLPDAQQPIVEDFSFFNQANL 193
Query: 79 PTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTV 138
P +++ Q + + GE+ AL L E + + + ++++ + P+ + T+
Sbjct: 194 PPLQQAYASTLEQNMIDHWPVGETYALDLLDEFVRKR--LNHYKQARDFPA---QVGTSQ 248
Query: 139 LSPYLKFGCLSSRYFYQCLTDVYQN-----VKKHTSPPVSLVGQLLWRDFFYTVAFGTPN 193
LS YL G LS R QC+ +++ V + S V L +LLWR+F+ + F P
Sbjct: 249 LSAYLNIGILSIR---QCIQALFRQQHGDFVIQSESQQVWL-DELLWREFYQHILFDFPQ 304
Query: 194 FDR-MKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ + + IPW +D L W++ +TG P +D+ M QL GWMH+ R A F
Sbjct: 305 VSKHLPFKSSTQNIPWRDDPIALEQWQQGKTGIPIVDSGMRQLLATGWMHNRLRMICAMF 364
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYD 311
L++ ++ + W KG F + LID D A NNG W W S + Y R+++P+S K+D
Sbjct: 365 LSK-NLLIDWRKGEQWFMQHLIDGDVAANNGGWQWCASTGTDAVPYFRVFNPISQSLKFD 423
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
PNG+YIR ++P L D+ + I+EP+ A IQ DYP P+V S+
Sbjct: 424 PNGDYIRQWVPELTDLDAKIIHEPY-ANTKIQ-------NLDYPMPIVELKSS 468
>gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
Length = 534
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 182/378 (48%), Gaps = 18/378 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI V + + LF P D++ +G +P + ++ + A + + PL P
Sbjct: 165 VQTALDAQGIAVETFNASLLFEPGDLVNADG-RPYQVFSAYWRAAMRRGVPAPPLGAPRR 223
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG----GESEALKKLRESISDKE 116
L+ G + + ++ LG + G + R GE A ++LR + +
Sbjct: 224 LNG----GALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSR- 278
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ + + P +T+ LSPY++FG LS+R + D Y + + +
Sbjct: 279 -LGGYAAERDRPGIA---STSRLSPYVRFGNLSARQLWHAAADAYAHGAATQADLDKFLS 334
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
+L WR+F +T P+ R +PW +D LAAWR TGYP++DA M +L
Sbjct: 335 ELGWREFGWTQLHHFPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELW 394
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFY 295
GWMH+ R A FL + + + W G F L+D+D A N NW W++ C +
Sbjct: 395 ATGWMHNRVRMVCASFLVK-HLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453
Query: 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
Y RI++PV+ G+K+DP+G Y+R ++P L +P I+EPW AP A +G YP
Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYP 513
Query: 356 APVVSHDSASKECKRKLG 373
P+V++D+A + G
Sbjct: 514 LPIVAYDAARRRALDAFG 531
>gi|219681664|ref|YP_002468050.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471353|ref|ZP_05635352.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219624507|gb|ACL30662.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 483
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 164/311 (52%), Gaps = 45/311 (14%)
Query: 97 FRGGESEALKKLRESISDK--EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
F GE EA+ +L+ K ++ + P D AT++LSPYL G +SSRY
Sbjct: 203 FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLD-------ATSMLSPYLSAGIISSRYCL 255
Query: 155 QCLTDVYQNVKKHTSPPVSLV------GQLLWRDFFYTVAFGTPNFDRMKGNRIC-KQIP 207
+ L +K S P++++ Q+LWR+F+Y + G P R + K+I
Sbjct: 256 KVL------LKTKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKIGRSESLVTWEKEIH 309
Query: 208 WSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRD 267
W N+ + AW+E TG+P IDA M QL + GWMH+ R + FL + ++ ++W +G +
Sbjct: 310 WINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVK-NLLINWREGEE 368
Query: 268 VFDRLLIDSDWAINNGNWLW---LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
F LID D A+NNG W W + C S Y RI++P+ K +D +GN+I+ F+P L
Sbjct: 369 YFISNLIDGDLALNNGGWQWSASVGCDS--APYIRIFNPLHQSKTFDESGNFIKKFIPEL 426
Query: 325 KDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
K++P +I++P W+ + DYP P++++ + K + +L ++
Sbjct: 427 KNVPNHHIHQPHEWSKQKNFKI--------DYPNPIINYSESRK-------TSLSLFKQA 471
Query: 383 NGQVSEDGLKN 393
++ ++GLKN
Sbjct: 472 RLKLHKNGLKN 482
>gi|433427372|ref|ZP_20407032.1| deoxyribodipyrimidine photolyase, partial [Haloferax sp. BAB2207]
gi|432196390|gb|ELK52848.1| deoxyribodipyrimidine photolyase, partial [Haloferax sp. BAB2207]
Length = 400
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/361 (31%), Positives = 162/361 (44%), Gaps = 30/361 (8%)
Query: 17 PVSHTLFNPADIIQKNGGKPPLTYQSFLKL---------AGQPLWASSPLPVSLSSLP-- 65
PV +F+P I N G Y F K +P +L S
Sbjct: 36 PVHDAIFHPPGSITTNAGDTYSVYTYFWKKWHDRDKPDPYPEPDADDLADAATLESAAQD 95
Query: 66 -PVGDVGY-FEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEK 123
GD + + +PT+ +LG++ P +S + RE +S + A+
Sbjct: 96 LTNGDAEFDIAVGGLPTISDLGFE-------EPSASVQSAGTEAARERLS--AFCADAIY 146
Query: 124 PKGDPSAY-LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS-LVGQLLWR 181
D Y + AT+ LS LKFG + R Y + V V QL WR
Sbjct: 147 RYADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWR 206
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
+F+ V PN + I W +DDE LAAW+ TGYP +DA M QLR+ +M
Sbjct: 207 EFYAHVLREHPNVVTENYKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYM 266
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRI 300
H+ R VA FLT+ D+ W G F L D D A +NG W W + + Q Y RI
Sbjct: 267 HNRVRMIVASFLTK-DLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRI 325
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
++P++ G++YDP+G YI+ ++P L D+ I+E W LT R + + DYP P+V
Sbjct: 326 FNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE-WH-ELTDLERER--LAPDYPEPIVD 381
Query: 361 H 361
H
Sbjct: 382 H 382
>gi|293321545|emb|CAZ66368.1| cryptochrome [Crateromorpha meyeri]
Length = 520
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 160/309 (51%), Gaps = 20/309 (6%)
Query: 77 EVPTVEELGYKGYGQEEL-SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA 135
++P++ E G + + FRGGE+ A+ +L ++ +AN +P P
Sbjct: 182 KIPSLSEFGITNETMSSIDTKFRGGETAAILQL------EKLIANRCEPNNLPKVAQLNQ 235
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDV---YQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP 192
+SP +KFGC+S R Y ++ + Y VK + L RD+ V P
Sbjct: 236 YDAISPAIKFGCISVRTIYNRVSKLEPKYNEVKNQ------IYDGLRNRDYCILVGGNCP 289
Query: 193 NFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
N D +G+ +PW + ++ RTGYP+IDA + QL++ G++H+ ++ +
Sbjct: 290 NIDN-QGSIYTYILPWDVKQDASTRFQTGRTGYPFIDAAIAQLKREGFIHNSVKNILVRT 348
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI--YSPVSFGKKY 310
LT M++ W +G +F + +D + AI +W+ S S++ + I +P+ K+
Sbjct: 349 LTCDLMWIGWHEGVRMFYKWSLDYNAAICALSWMHGSKSTWLLEEISISQINPIEEAKEI 408
Query: 311 DPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP-VVSHDSASKECK 369
D +G+YIR +LP LKD P EYI+ PW APL Q ++C+IG+DYP P + ++C+
Sbjct: 409 DKDGDYIRKYLPELKDYPSEYIHTPWLAPLDQQIESECVIGQDYPYPNYCDVEERVQQCR 468
Query: 370 RKLGEAYAL 378
++L Y +
Sbjct: 469 KRLQIFYNI 477
>gi|427400664|ref|ZP_18891902.1| hypothetical protein HMPREF9710_01498 [Massilia timonae CCUG 45783]
gi|425720177|gb|EKU83100.1| hypothetical protein HMPREF9710_01498 [Massilia timonae CCUG 45783]
Length = 484
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 162/357 (45%), Gaps = 35/357 (9%)
Query: 44 LKLAGQPLWASSPL-----------PVSLSSLPPVGDVGYFEISEVPTV----EELGYKG 88
L LAGQP +P P +L++ P F P E++G+
Sbjct: 140 LTLAGQPYSVFTPYKNAWRKRLAAHPETLAAYPVDACAHAFAPPSSPPALPSLEDIGFDA 199
Query: 89 YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCL 148
G+ L G + E I+D +F G T+ LS +L+FG
Sbjct: 200 -GESPLPAGMAGAEALFEAFVEDIADYGRARDFPAEDG---------TSRLSTHLRFGTT 249
Query: 149 SSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW 208
S R+ + + + V L +L+WRDF+ V P+ + W
Sbjct: 250 SIRHLVRTAQQLTLSGAGGAGASVWL-SELIWRDFYAMVLARHPHVLERSFKPAFDAVQW 308
Query: 209 SND---DELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
+ DEL AAW E RTGYP +DA MVQL G+MH+ R A FLT+ D+ + W +G
Sbjct: 309 DDGPDADELFAAWCEGRTGYPLVDAAMVQLNTTGFMHNRLRMVTASFLTK-DLGIDWRRG 367
Query: 266 RDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
F L D + A NNG W W + + Q + RI++PV+ ++D G +IR +LP L
Sbjct: 368 EAYFALQLNDYEMASNNGGWQWAASTGCDTQPWFRIFNPVTQSTRFDARGEFIRRYLPQL 427
Query: 325 KDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQK 381
+ + + I+ PW ++G DYPAPVV HD+A +R+ E +A+ +K
Sbjct: 428 RKLDAKQIHAPWQVKPEALAERGVVLGEDYPAPVVDHDAA----RRRTLERFAVVRK 480
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,716,366,217
Number of Sequences: 23463169
Number of extensions: 359192571
Number of successful extensions: 792735
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3528
Number of HSP's successfully gapped in prelim test: 548
Number of HSP's that attempted gapping in prelim test: 778137
Number of HSP's gapped (non-prelim): 4357
length of query: 422
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 277
effective length of database: 8,957,035,862
effective search space: 2481098933774
effective search space used: 2481098933774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)