BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014577
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/415 (76%), Positives = 377/415 (90%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS 60
+KVKDYAS+ G+EVFSPVSHTLFNPA II+KNGGKPPL+YQSFLK+AG+P A S L +S
Sbjct: 141 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 200
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVAN 120
SSLPP+GD+G ISEVP++EELGYK Q + +PFRGGESEALK+L +SISDK WVAN
Sbjct: 201 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 260
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
FEKPKGDPSA+LKPATTV+SPYLKFGCLSSRYFYQCL ++Y++VKKHTSPPVSL+GQLLW
Sbjct: 261 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLW 320
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT AFGTPNFD+MKGNRICKQIPW+ D +LAAWR+ +TGYPWIDAIMVQL KWGW
Sbjct: 321 REFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGW 380
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
MHHLARHCVACFLTRGD+F+HWE+GRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQ+NRI
Sbjct: 381 MHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRI 440
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
YSP+SFGKKYDP+G YIRHFLPVLKDMPK+YIYEPWTAPL++QT+A CI+G+DYP P+V
Sbjct: 441 YSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVL 500
Query: 361 HDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
HDSASKECKRK+GEAYALN+K++G+V E+ L++LRRK + +E++ES R ++ L
Sbjct: 501 HDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKDEHEESKIRNQRPKL 555
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/414 (71%), Positives = 348/414 (84%), Gaps = 3/414 (0%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSL 61
KV D+A+ +GI+VFSPVSHTLF+PA+II+KNGG+PP+TYQSF+ +AG+P P+
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEP---PEPIMEEY 193
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPPVGD G +E+ VP VEELGY QE+LS FRGGE+EALK++RES+ DKEWVA F
Sbjct: 194 SELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKF 253
Query: 122 EKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWR 181
EKPKGDPSA+LKPATTVLSPYLKFGCLSSRYFY C+ D+Y++ KKHT+PPVSL GQLLWR
Sbjct: 254 EKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPVSLTGQLLWR 313
Query: 182 DFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241
DFFYTVAFGTPNFD+MKGN+ICKQIPW+ ++EL AWR+ RTGYPWIDAIM+QLRKWGWM
Sbjct: 314 DFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWM 373
Query: 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIY 301
HHLARH VACFLTRGD+F+HWEKGRDVF+RLLIDSDWAINNGNW+WLSCSSFFYQY+RIY
Sbjct: 374 HHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIY 433
Query: 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
SP SFGKKYDPNGNYIRHF+PVLKDMPKEYIYEPWTAPL+IQ +A CIIG+DYP PVV H
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493
Query: 362 DSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQKTL 415
ASKECK+ +GEAYA N+ + + + N R+ +Q + K K L
Sbjct: 494 AIASKECKKMMGEAYASNRLDDDKPDKGKSSNSSRRKLSAGSQVTPNSSKTKQL 547
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/380 (51%), Positives = 265/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 173 EVMKKCTTPVSDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/380 (51%), Positives = 265/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 173 EVMQKCTTPVSDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 WVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP ++Q AKC+IG +YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172
Query: 63 S-----LPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 DVIGKCMTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/380 (51%), Positives = 264/380 (69%), Gaps = 10/380 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ------PLWASSP 56
+K AS AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P+ +P
Sbjct: 113 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITP 172
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
+ + P D + E VP++EELG+ G + + GGE+EAL +L + K
Sbjct: 173 EVMKKCTTPVFDD--HDEKYGVPSLEELGFDTDGLPS-AVWPGGETEALTRLERHLERKA 229
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL G
Sbjct: 230 SVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYG 288
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR
Sbjct: 289 QLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW++N G+W+WLSCSSFF Q
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQ 408
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP +IQ AKCIIG +YP
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPK 468
Query: 357 PVVSHDSASKECKRKLGEAY 376
P+V+H AS+ ++ + Y
Sbjct: 469 PMVNHAEASRLNIERMKQIY 488
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 262/379 (69%), Gaps = 8/379 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + P S
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172
Query: 63 SL-----PPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEW 117
+ P+ D + E VP++EELG+ G + + GGE+EAL +L + K W
Sbjct: 173 DVIGKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLERKAW 230
Query: 118 VANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177
VANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+SL GQ
Sbjct: 231 VANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237
LLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM QLR+
Sbjct: 290 LLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349
Query: 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQY 297
GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSFF Q+
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQF 409
Query: 298 NRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAP 357
Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +YP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 358 VVSHDSASKECKRKLGEAY 376
+V+H AS+ ++ + Y
Sbjct: 470 MVNHAEASRLNIERMKQIY 488
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 265/383 (69%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VK+++SPP+S
Sbjct: 227 RKAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKRNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGIN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/383 (50%), Positives = 263/383 (68%), Gaps = 16/383 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+K A+ AG+EV +SHTL++ II+ NGG+PPLTY+ F L + PL + +
Sbjct: 113 IKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISK----MEPLEIPVE 168
Query: 63 SLP---------PVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESIS 113
++ P+ D + E VP++EELG+ G + + GGE+EAL +L +
Sbjct: 169 TITSEVIEKCTTPLSD-DHDEKYGVPSLEELGFDTDGLSS-AVWPGGETEALTRLERHLE 226
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
+ WVANFE+P+ + ++ L + T LSPYL+FGCLS R FY LTD+Y+ VKK++SPP+S
Sbjct: 227 RRAWVANFERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLS 285
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FD+M+GN IC QIPW + E LA W E RTG+PWIDAIM
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 345
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLT D+++ WE+G VF+ LL+D+DW+IN G+W+WLSCSSF
Sbjct: 346 QLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSF 405
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DPNG+YIR +LPVL+ P +YIY+PW AP IQ AKC+IG +
Sbjct: 406 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVN 465
Query: 354 YPAPVVSHDSASKECKRKLGEAY 376
YP P+V+H AS+ ++ + Y
Sbjct: 466 YPKPMVNHAEASRLNIERMKQIY 488
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/391 (49%), Positives = 262/391 (67%), Gaps = 16/391 (4%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F L + P V++S
Sbjct: 131 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKP-AVAVS 189
Query: 63 SLPPVGDVGYFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEALKKLRESIS 113
S + EI E VP++EELG+ G L P ++GGE+EAL +L + +
Sbjct: 190 S--QQMESCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLE 244
Query: 114 DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173
K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+S
Sbjct: 245 RKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLS 303
Query: 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
L GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM
Sbjct: 304 LFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMT 363
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+F
Sbjct: 364 QLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAF 423
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
F Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q AKCIIG D
Sbjct: 424 FQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVD 483
Query: 354 YPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
YP P+V+H S+ ++ + Y + G
Sbjct: 484 YPRPIVNHAETSRLNIERMKQIYQQLSRYRG 514
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/388 (49%), Positives = 259/388 (66%), Gaps = 10/388 (2%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPV--- 59
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F + + P+ +
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 191
Query: 60 -SLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKE 116
+ S + E VP++EELG+ G L P ++GGE+EAL +L + + K
Sbjct: 192 QQMESCRAEIQENHDETYGVPSLEELGFPTEG---LGPAVWQGGETEALARLDKHLERKA 248
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ VK++++PP+SL G
Sbjct: 249 WVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFG 307
Query: 177 QLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
QLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR
Sbjct: 308 QLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 367
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+W+WLSCS+FF Q
Sbjct: 368 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ 427
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPA 356
+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP +IQ AKCIIG DYP
Sbjct: 428 FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPR 487
Query: 357 PVVSHDSASKECKRKLGEAYALNQKLNG 384
P+V+H S+ ++ + Y + G
Sbjct: 488 PIVNHAETSRLNIERMKQIYQQLSRYRG 515
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/400 (49%), Positives = 261/400 (65%), Gaps = 34/400 (8%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
+ A AG+EV + SHTL++ II+ NG KPPLTY+ F L +S
Sbjct: 131 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAL------------ISRM 178
Query: 63 SLP--PVGDVG-------YFEISE-------VPTVEELGYKGYGQEELSP--FRGGESEA 104
LP PVG V EI E VP++EELG+ G L P ++GGE+EA
Sbjct: 179 ELPKKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEG---LGPAVWQGGETEA 235
Query: 105 LKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L +L + + K WVAN+E+P+ + ++ L + T LSPYL+FGCLS R FY L D+Y+ V
Sbjct: 236 LVRLDKHLERKAWVANYERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWDLYRKV 294
Query: 165 KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTG 224
K++++PP+SL GQLLWR+FFYT A P FDRM+GN IC QIPW + E LA W E +TG
Sbjct: 295 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTG 354
Query: 225 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGN 284
+PWIDAIM QLR+ GW+HHLARH VACFLTRGD++V WE G VFD LL+D+D+++N G+
Sbjct: 355 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGS 414
Query: 285 WLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQT 344
W+WLSCS+FF Q+ Y PV FG++ DP+G+YIR +LP LK P YIYEPW AP ++Q
Sbjct: 415 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQK 474
Query: 345 RAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNG 384
A CIIG DYP P+V+H S+ ++ + Y + G
Sbjct: 475 AANCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRG 514
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/384 (48%), Positives = 258/384 (67%), Gaps = 10/384 (2%)
Query: 7 ASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP 66
A AG+EV SHTL+N II+ NG KPPLTY+ F + + P+ +S
Sbjct: 126 AKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQME 185
Query: 67 VGDVGYFE----ISEVPTVEELGYKGYGQEELSP--FRGGESEALKKLRESISDKEWVAN 120
V E + VP++EELG+ G L+P ++GGE+EAL +L + + K WVAN
Sbjct: 186 TCKVDIQENHDDVYGVPSLEELGFPTDG---LAPAVWQGGETEALARLDKHLERKAWVAN 242
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
+E+P+ + ++ L + T LSPYL+FGCLS R FY L ++Y+ VK++++PP+SL GQLLW
Sbjct: 243 YERPRMNANSLLA-SPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLW 301
Query: 181 RDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240
R+FFYT A P FDRM+GN IC QIPW + E LA W E +TG+PWIDAIM QLR+ GW
Sbjct: 302 REFFYTAATNNPKFDRMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 361
Query: 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRI 300
+HHLARH VACFLTRGD+++ WE G VFD LL+D+D+++N G+W+WLSCS+FF Q+
Sbjct: 362 IHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHC 421
Query: 301 YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVS 360
Y PV FG++ DP+G+Y++ +LP LK P YIYEPW AP ++Q AKCIIG DYP P+V+
Sbjct: 422 YCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVN 481
Query: 361 HDSASKECKRKLGEAYALNQKLNG 384
H S+ ++ + Y + G
Sbjct: 482 HAETSRLNIERMKQIYQQLSRYRG 505
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 269 bits (687), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 225/393 (57%), Gaps = 41/393 (10%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK---LAGQPLWASSPLPV 59
+++ ++ VSHTL++P II+ NGG PPLTYQ FL + G+P P PV
Sbjct: 119 IQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKP-----PRPV 173
Query: 60 SLSSLPPVGDVGYFEISEVPTV---------------EELGYKGYGQEELS--PFRGGES 102
+ S + E +P++ E+ G G ++S + GGE+
Sbjct: 174 AAPSFE------FVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGET 227
Query: 103 EALKKLRESISDKE--WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160
+AL+ L + +E ++ + P +L P T+ +S L+FGCLS R FY C+ D+
Sbjct: 228 KALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVPPTS-MSAALRFGCLSVRMFYWCVHDL 286
Query: 161 YQNVK---KHTSPP-VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELL 215
Y+ V+ ++ +P + GQL+WR++FYT++ P++ M+ N IC IPW D+ L
Sbjct: 287 YEKVQANNQYRNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDDSL 346
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
W+E RTG+P IDA M QL GW+HH+ R+ A FLTRG +++ WE G F + L+D
Sbjct: 347 DRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLD 406
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + SP++ ++ DP G Y+R +LP LK++P Y++
Sbjct: 407 ADWSVCAGNWMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVH 466
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
EPW APL +Q CI+GRDYPAP++ +AS+
Sbjct: 467 EPWKAPLDVQKECGCIVGRDYPAPMIDLAAASR 499
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 215/405 (53%), Gaps = 50/405 (12%)
Query: 11 GIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPP---- 66
GIE VSHTL++P +I+ NGG PPLTYQ FL V + +PP
Sbjct: 129 GIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLH------------TVQIIGVPPRPAI 176
Query: 67 ---VGDVGYFEIS-----------EVPTVEELGYKGYGQEELSPF--RGGESEALKKLRE 110
+ D + +++ +VP E L+ RGGE++AL L E
Sbjct: 177 DAHINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEE 236
Query: 111 SISDKEWVANFEKPKGDPSAY---LKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-- 165
+ + FE+ P+ ++ A +S +L+FGCLS R FY + D+++NV+
Sbjct: 237 RLKVER--NAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLA 294
Query: 166 -----KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDE-LLAAWR 219
+ GQL+WR++FYT++ PN+DRM+GN IC IPW+ DE LL WR
Sbjct: 295 ACVRGVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLTIPWAKPDENLLQRWR 354
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
+TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D+DW+
Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWS 414
Query: 280 INNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWT 337
+ GNW+W+S S+F + + PV+ K+ DP G YIR ++P LK++PKEYI+EPW
Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIHEPWR 474
Query: 338 APLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
Q + +C+IG YP ++ SK KR + AL L
Sbjct: 475 LSAEQQVKFECLIGVHYPERII---DLSKAVKRNMMAMTALRNSL 516
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 215/397 (54%), Gaps = 21/397 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG------QPLWASSP 56
V T + VSHTL+NP ++IQ NG PPLTYQ FL +P+ A +
Sbjct: 121 VAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDPPRPVGAPNF 180
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELG--YKGYGQEELSPFRGGESEALKKLRESISD 114
V +P + ++P ++ G Y G + + GGE+ AL+ L +
Sbjct: 181 EYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEALGARLKQ 240
Query: 115 KE--WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPV 172
+E + + P L PAT+ +S L+FGCLS R FY C+ D++ V+ ++
Sbjct: 241 EEEAFREGYYLPTQAKPEILGPATS-MSAALRFGCLSVRMFYWCVHDLFAKVQSNSQFKY 299
Query: 173 ----SLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYPW 227
+ GQL+WR++FYT++ P++ M+ N IC IPW +D+ L W+E RTG+P
Sbjct: 300 PGGHHITGQLIWREYFYTMSVQNPHYGEMERNPICLNIPWYKPEDDSLTRWKEGRTGFPM 359
Query: 228 IDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW 287
IDA M QL GW+HH+ R+ A FLTRG +++ WE+G F + L+D+DW++ GNW+W
Sbjct: 360 IDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAGNWMW 419
Query: 288 LSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTR 345
+S S+F ++ P++ ++ DP G+Y++ +LP L + P ++++EPW A Q
Sbjct: 420 VSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFVHEPWKASREQQIE 479
Query: 346 AKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
C+IG YPAP+V S KR +L +KL
Sbjct: 480 YGCVIGEKYPAPMVDLAIVS---KRNAHTMASLREKL 513
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 216/393 (54%), Gaps = 39/393 (9%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL---KLAGQPLWASSPLPV 59
++ I+ VSHTL++P +I+ NGG PPLTYQ FL ++ G P P P
Sbjct: 121 IRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP-----PRPT 175
Query: 60 SLSSLPPVGDVGYFEIS-----------EVPTVEELGYKGYGQEELSPF--RGGESEALK 106
+ + L D + E+ ++PT E G L+ RGGE++AL
Sbjct: 176 ADARLE---DATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALL 232
Query: 107 KLRE--SISDKEWVANFEKP-KGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQN 163
L E + + F P + P+ + P + +S +L+FGCLS R FY + D+++N
Sbjct: 233 LLDERLKVEQHAFERGFYLPNQALPNIHDSPKS--MSAHLRFGCLSVRRFYWSVHDLFKN 290
Query: 164 VK-------KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDE-LL 215
V+ + + GQL+WR++FYT++ PN+DRM+GN IC IPW+ +E LL
Sbjct: 291 VQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL 350
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
+WR +TG+P ID M QL GW+HH R+ VA FLTRG ++ WE G F + L+D
Sbjct: 351 QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLD 410
Query: 276 SDWAINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+DW++ GNW+W+S S+F + + PV+ K+ DP+G YI+ ++P L ++PKE+++
Sbjct: 411 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVH 470
Query: 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASK 366
EPW Q + +C+IG YP ++ A K
Sbjct: 471 EPWRMSAEQQEQYECLIGVHYPERIIDLSMAVK 503
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1
Length = 499
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/349 (36%), Positives = 193/349 (55%), Gaps = 17/349 (4%)
Query: 49 QPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELG--YKGYGQEELSPFRGGESEALK 106
+P+ A S V LP + P E+ G Y+G + GGE++AL+
Sbjct: 126 RPVGAPSFEFVEFGRLPSILSTELKLFQRAPVPEDFGIYYEGNADIARQRWTGGEAKALE 185
Query: 107 KLRESISDKE--WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV 164
L + +E + + P +L P ++ +S L+FGCLS R FY C+ D++ V
Sbjct: 186 LLGRRLKQEEEAFREGYYLPTQARPDFLAPPSS-MSAALRFGCLSVRMFYWCVHDLFARV 244
Query: 165 K-----KHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPW-SNDDELLAAW 218
+ KH + GQL+WR++FYT++ P++ M+ N IC IPW D+ L W
Sbjct: 245 QANNQLKHPGGH-HITGQLIWREYFYTMSVHNPHYAVMELNPICLNIPWYEAKDDSLDRW 303
Query: 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDW 278
+E RTG+P IDA M QL GW+HH+ R+ A FLTRG +++ WE G F + L+D+DW
Sbjct: 304 KEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAGVQHFLKYLLDADW 363
Query: 279 AINNGNWLWLSCSSF--FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPW 336
++ GNW+W+S S+F + SPV+ ++ DP G Y++ +LP L+ P Y++EPW
Sbjct: 364 SVCAGNWMWVSSSAFEKLLDSSSCTSPVALARRLDPKGEYVKRYLPELEKFPALYVHEPW 423
Query: 337 TAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQ 385
AP +Q + C+IG+DYPAP+V+ +K K+ A+ QKL Q
Sbjct: 424 KAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNANKMN---AIRQKLLDQ 469
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 150/275 (54%), Gaps = 14/275 (5%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE A+K+L+ + K+ ++ ++ + PS T+ LSPY+K G +SSR Y +
Sbjct: 210 GEEHAIKRLQ--MFTKKRLSGYKANRDFPSI---TGTSRLSPYIKTGAVSSRSIYYHIL- 263
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
N + + + + +L WRDF+ V F P+ + +++ WS+D + L +W+
Sbjct: 264 ---NAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWK 320
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
TG+P +DA M QL GWMH+ R A FLT+ D+ + W G F+R+LID D +
Sbjct: 321 RGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDPS 379
Query: 280 INNGNWLWL-SCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
N G W W S + Y RI++PV+ K++D NG YIR ++P L +P YI+EPW
Sbjct: 380 SNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKM 439
Query: 339 PLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373
Q + KC + DYP P+V H SK+ K+ L
Sbjct: 440 SEEEQVKYKCRLDEDYPLPIVDH---SKQRKKALS 471
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 188/393 (47%), Gaps = 33/393 (8%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLK-LAGQPLWASSPLPVS 60
+V TAGI L +P D I G P Y F K QP P
Sbjct: 112 QVAAALKTAGIRAVQLWDQLLHSP-DQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTE 170
Query: 61 LSSLPP--VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWV 118
L L P + + +SE+PT+++LG+ G + P GE+ A+ +L+E D+ +
Sbjct: 171 LVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEP---GETAAIARLQE-FCDRA-I 225
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ- 177
A+++ + P+ + T+ LSP LKFG + R ++ + + + + V Q
Sbjct: 226 ADYDPQRNFPA---EAGTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQ 282
Query: 178 -LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLR 236
L WR+F+ + P+ + +Q PW N + L AW +A+TGYP +DA M QL
Sbjct: 283 ELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLT 342
Query: 237 KWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ 296
+ GWMH+ VA FLT+ D+ + W +G F + L+D D A NNG W W + S +
Sbjct: 343 ETGWMHNRCWMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPK 401
Query: 297 YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDM-PKEYIYEPWTAPLTIQTRAKCIIGRDYP 355
RI++P S KK+D YI+ +LP L+ + PK+ I T I R YP
Sbjct: 402 PLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITP----------IGRRGYP 451
Query: 356 APVVSHDSASKECKRKLGEAYALNQKLNGQVSE 388
AP+V+H+ K+ K AL +L ++E
Sbjct: 452 APIVNHNLRQKQFK-------ALYNQLKAAIAE 477
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 181/366 (49%), Gaps = 19/366 (5%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-----QPLWASSP 56
K+K+ + V + TL++ D+ + G P Y F K +P+ ++
Sbjct: 121 KLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLST-- 178
Query: 57 LPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISD 114
P + S PP G E +PT + LG + S F RGGE+EAL +L+ D
Sbjct: 179 -PEQVKS-PPSG----LEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWD 232
Query: 115 KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSL 174
VA +++ + +T SP+L GC+S RY Y+ + Y+ + +
Sbjct: 233 TNAVATYKETRNGMIGV--DFSTKFSPWLALGCISPRYIYEQIKK-YEVERTANQSTYWV 289
Query: 175 VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+ +LLWRD+F VA N K +PW+ D ++ AW+E RTG P++DA M +
Sbjct: 290 IFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRE 349
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
L G+M + R VA FLT+ D+ + W G + F+ LL+D D N GNWL+ +
Sbjct: 350 LALTGFMSNRGRQNVASFLTK-DLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGND 408
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+ NR ++ + G YD NG+Y+R ++P L+ + ++ PWT + + A+ + + Y
Sbjct: 409 PRENRKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468
Query: 355 PAPVVS 360
P P+++
Sbjct: 469 PCPIIT 474
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 105 LKKLRESISD--KEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQ 162
+ +R + D +E V ++ + + P+ + T+ LSPYL G LS+R QC+ +Y
Sbjct: 206 FETVRAQLRDFCRERVQDYHQARDFPA---REGTSSLSPYLAIGVLSAR---QCVARLYH 259
Query: 163 --NVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKG-NRICKQIPWSNDDELLAAWR 219
++ + + + +L+WR+F+ + PN + + ++ W ND+E W
Sbjct: 260 ESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWC 319
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TGYP +DA M QL + GWMH+ R VA FLT+ D+ + W G F LID D+A
Sbjct: 320 EGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYA 378
Query: 280 INNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTA 338
NNG W W + + Q Y RI++PVS G+K+DPNG++IR ++P L+ + YI++PWT
Sbjct: 379 ANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTY 438
Query: 339 PLTIQTRAKCIIGRDYPAPVVSH 361
P + YPA +V H
Sbjct: 439 P--------AVNSVLYPARLVDH 453
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 164/311 (52%), Gaps = 45/311 (14%)
Query: 97 FRGGESEALKKLRESISDK--EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154
F GE EA+ +L+ K ++ + P D AT++LSPYL G +SSRY
Sbjct: 203 FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLD-------ATSMLSPYLSAGIISSRYCL 255
Query: 155 QCLTDVYQNVKKHTSPPVSLV------GQLLWRDFFYTVAFGTPNFDRMKGNRIC-KQIP 207
+ L +K S P++++ Q+LWR+F+Y + G P R + K+I
Sbjct: 256 KVL------LKTKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSESLVTWEKEIH 309
Query: 208 WSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRD 267
W N+ + AW+E TG+P IDA M QL + GWMH+ R + FL + ++ ++W +G +
Sbjct: 310 WINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVK-NLLINWREGEE 368
Query: 268 VFDRLLIDSDWAINNGNWLW---LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
F LID D A+NNG W W + C S Y RI++P+ K +D +GN+I+ F+P L
Sbjct: 369 HFISNLIDGDLALNNGGWQWSASVGCDSV--PYIRIFNPLHQSKTFDESGNFIKKFIPEL 426
Query: 325 KDMPKEYIYEP--WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382
K++P +I++P W+ + DYP P++++ + K + +L ++
Sbjct: 427 KNVPNHHIHQPHEWSKQKNFKI--------DYPNPIINYSESRK-------TSLSLFKQA 471
Query: 383 NGQVSEDGLKN 393
++ ++GLKN
Sbjct: 472 RLKLHKNGLKN 482
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 179/373 (47%), Gaps = 24/373 (6%)
Query: 8 STAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPV 67
+ GIE TL +P D+ P L + F K + + P + S L P
Sbjct: 126 TILGIEAKGYWGSTLCHPEDLPFSIQDLPDL-FTKFRKDIEKKKISIRPCFFAPSQLLPS 184
Query: 68 GDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGD 127
++ E++ P E + + F+GGE+ L +L++ + + ++++ +
Sbjct: 185 PNIK-LELT-APPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKETRNG 242
Query: 128 PSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS------LVGQLLWR 181
++ SP+L GCLS R+ +YQ VK++ VS L+ +LLWR
Sbjct: 243 MVG--ADYSSKFSPWLALGCLSPRF-------IYQEVKRYEQERVSNDSTHWLIFELLWR 293
Query: 182 DFFYTVA--FGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239
DFF VA +G F+R G + K PW D WR +TGYP +DA M +L G
Sbjct: 294 DFFRFVAQKYGNKLFNR--GGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTG 351
Query: 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNR 299
+M + R VA FL + ++ + W G + F+ LID D N GNW + + + R
Sbjct: 352 FMSNRGRQNVASFLCK-NLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFR 410
Query: 300 IYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
++ ++YDP G Y+RH+LP LK++P + I++PW T Q + +G DYP P V
Sbjct: 411 YFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCV 470
Query: 360 SHDSASKECKRKL 372
+ S E +RK+
Sbjct: 471 NFHQ-SVEARRKI 482
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 21/292 (7%)
Query: 76 SEVPTVEELGYKGYGQEELSPFRGGESEA---LKKLRESISDKEWVANFEKPKGDPSAYL 132
S +P+V+ELG+ + E + G + A L RES + + P +P
Sbjct: 187 SPLPSVQELGF---AEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDYPHEEP---- 239
Query: 133 KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP--VSLVGQLLWRDFFYTVAFG 190
T+ LSP+LKFG + R Y+ + + +GQL WR+F+ V +
Sbjct: 240 ---TSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVLYF 296
Query: 191 TPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250
N I W +D L AW++ TGYP +DA M QLR +MH+ R VA
Sbjct: 297 NQNVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVA 356
Query: 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKK 309
FLT+ D+ V W G D F L D D A +NG W W + + Q Y R+++P++ G++
Sbjct: 357 AFLTK-DLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGER 415
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSH 361
YDP+ +YI F+P L+D+P + I+ W L++ R + +YP P+V H
Sbjct: 416 YDPDADYITEFVPELRDVPADAIHS-WH-ELSLSERRRH--APEYPDPIVDH 463
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 171/378 (45%), Gaps = 26/378 (6%)
Query: 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ-PLWASSPLPV 59
+ V G+ + + + +P +++ + G P Y F K Q P + P P
Sbjct: 125 LAVAQALRERGLAIATEWDQLMHHPGEVLTQ-AGSPYTVYTPFWKNWSQLPKTSPVPTPK 183
Query: 60 SLSSLPPVGD--VGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISD--K 115
L L P + E +P + +LG+ ++ P GE A ++L ++ +
Sbjct: 184 DLQGLTPAEKEKLAPLEPLAIPQLADLGFIW---DQPLPLTPGEEAAEQRLDWFVAHGLE 240
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLV 175
E+ N P D T+ LS LKFG +S R +Q + ++ + +
Sbjct: 241 EYQQNRNFPALD-------GTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIET 293
Query: 176 GQ--LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
Q L WR+F+ + P + ++ PW + + AW E RTGYP IDA M
Sbjct: 294 WQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMA 353
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSF 293
QL + GWMH+ R VA FL + D+ ++W+ G F + L D D A NNG W W + S
Sbjct: 354 QLNQTGWMHNRCRMIVASFLIK-DLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGM 412
Query: 294 FYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRD 353
+ RI++P + +K+DP G YIR +LP L + T LT +R +
Sbjct: 413 DPKPLRIFNPHTQAQKFDPEGEYIRTWLPQLARFDTGDLL---TGKLTPGSRRSV----N 465
Query: 354 YPAPVVSHDSASKECKRK 371
YP P+V H+ +E KR+
Sbjct: 466 YPEPIVDHNQQQREFKRR 483
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 149/288 (51%), Gaps = 12/288 (4%)
Query: 77 EVPTVEELGYKGYGQEELS--PFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKP 134
E+P + +LG + +E + F+GGE+ L +L E K + ++++ +
Sbjct: 188 EIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLLKSYKQTRN--GMLGAD 245
Query: 135 ATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF 194
++ S +L GCLS+RY ++ + Y+ + L+ +LLWRD+F +A +
Sbjct: 246 YSSKFSAWLALGCLSARYIHEQV-QTYETKRIKNDSTYWLIFELLWRDYFRFIA--AKHG 302
Query: 195 DRM---KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVAC 251
DR+ G R IPW D E WR +TG+P +DA M +L G+M + R VA
Sbjct: 303 DRLFYTAGLRGL-DIPWKEDWERFELWRTGQTGFPLVDANMRELAATGFMSNRGRQNVAS 361
Query: 252 FLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYD 311
FLT+ ++ +HW G + F+ LID D A N GNW + + + R ++ + + YD
Sbjct: 362 FLTK-NLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARGFRFFNILKQARDYD 420
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVV 359
P+G Y++H+LP L +P ++EPW Q R +G DYP PVV
Sbjct: 421 PDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLGVDYPQPVV 468
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 174/380 (45%), Gaps = 27/380 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ--PLWASSPLPVS 60
VK + GI+ + TL++ D+ ++ P Y F K + + +P
Sbjct: 123 VKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDK 182
Query: 61 LSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPF--RGGESEALKKLRESISDKEWV 118
L LP E VP+ E+ + + + F GGES+AL++L + V
Sbjct: 183 LKPLP-----SGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWETNLV 237
Query: 119 ANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178
A+++ + +T +P+L GC+S RY Y+ + Y+ + ++ +L
Sbjct: 238 ASYKDTRNGLIGL--DYSTKFAPWLALGCVSPRYIYEQIGK-YEKERTANQSTYWVIFEL 294
Query: 179 LWRDFFYTVAFGTPNFDRMKGNRIC-------KQIPWSNDDELLAAWREARTGYPWIDAI 231
LWRD+F VA G RI K IPW D +L AW+E RTG P++DA
Sbjct: 295 LWRDYFRFVALKY-------GRRIFFLRGLQDKDIPWKRDPKLFDAWKEGRTGVPFVDAN 347
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M +L G+M + R VA FLT+ D+ + W G + F+ LL+D D N GNWL+ +
Sbjct: 348 MRELAMTGFMSNRGRQNVASFLTK-DLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGI 406
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIG 351
+ NR ++ + G YD G+YIR ++P L+ + + PW A +G
Sbjct: 407 GNDPRENRKFNMIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLG 466
Query: 352 RDYPAPVVSHDSASKECKRK 371
YP P+V S+ +K
Sbjct: 467 ETYPYPIVMAPEWSRHINQK 486
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 181/373 (48%), Gaps = 21/373 (5%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL--PVS 60
V+ GI TL +P ++ + P L + F K + A SPL P+
Sbjct: 116 VQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPEL-FTDFRKEIEKQCEARSPLEEPIR 174
Query: 61 L-SSLPPVGDVGYFEISEVPTVEELGYKGYGQEE--LSPFRGGESEALKKLRESISDKEW 117
+ +LP + G ++PT+E LG ++ L+ F GG++ A +++ E I +++
Sbjct: 175 IHGTLPEEVNAG-----DIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDR 229
Query: 118 VANFEKPKGDPSAYLKPA-TTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ +++ + + L P ++ SP+L GCLS R + Y+ + ++
Sbjct: 230 LRVYKETR---NGMLHPNDSSKFSPWLAQGCLSPRMIADHVRR-YEEERVKNKSTYWMIF 285
Query: 177 QLLWRDFFYTVA--FGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234
+LLWRD+F ++ G F R G R + W +D EL W++ TGYP +DA M +
Sbjct: 286 ELLWRDYFRWISRKHGATLF-RAGGLRGVN-VDWKSDRELFRRWQDGTTGYPLVDANMRE 343
Query: 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFF 294
LR G+M + R VA FLT+ ++ + W G F+ L+D D A N GNW + +
Sbjct: 344 LRTTGYMSNRGRQNVASFLTK-NLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGND 402
Query: 295 YQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDY 354
+ R ++ + YD G Y +H+LP L+D+ I+EPW Q +G++Y
Sbjct: 403 ARGFRFFNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEY 462
Query: 355 PAPVVSHDSASKE 367
P P+V ++KE
Sbjct: 463 PHPIVDLFDSAKE 475
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 148/288 (51%), Gaps = 30/288 (10%)
Query: 92 EELSP--FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLS 149
E LSP RGGE EA +KL S + +A++E D + AT+ LSP+L FG +S
Sbjct: 190 ENLSPGLARGGE-EAGRKLVTSWLNGP-MADYEDGHDDLAG---DATSRLSPHLHFGTVS 244
Query: 150 SRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFD----RMKGNRICKQ 205
+ V++ +K + V QL WRDF + V P+ R + +R
Sbjct: 245 AAEL------VHRAREKGGLGGEAFVRQLAWRDFHHQVLADRPDASWSDYRPRHDR---- 294
Query: 206 IPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKG 265
W +D + + AW+ TGYP +DA M QL GWMH+ AR A FLT+ ++V W +G
Sbjct: 295 --WRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTK-TLYVDWREG 351
Query: 266 RDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325
F LL+D D A N NW W++ + + NR+ +PV GK++D G+Y+R ++P L
Sbjct: 352 ARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPVIQGKRFDARGDYVRGWVPELA 411
Query: 326 DMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373
++ I+EPW L RA G DYP PVV A +R G
Sbjct: 412 EVEGSAIHEPWK--LQGLDRA----GLDYPDPVVDLAEARARFERARG 453
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 177/376 (47%), Gaps = 27/376 (7%)
Query: 3 VKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS 62
VK+ GI V S L+ P +I + G KP ++ S+ K S LP
Sbjct: 115 VKEKLVERGISVQSYNGDLLYEPWEIYCEKG-KPFTSFNSYWKKCLDMSIESVMLPPPWR 173
Query: 63 SLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRG-----GESEALKKLRESISDK-- 115
+P E ++EELG + ++ + G S A K L E I +
Sbjct: 174 LMPITAAA---EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLI 230
Query: 116 EWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC--LTDVY----QNVKKHTS 169
++ N +K G+ +T++LSPYL FG +S R+ +QC + + +N + S
Sbjct: 231 DYAKNSKKVVGN-------STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEES 283
Query: 170 PPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229
+ L G L R++ + F P + PW D + AWR+ RTGYP +D
Sbjct: 284 ADLFLRGIGL-REYSRYICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVD 342
Query: 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS 289
A M +L GWMH+ R V+ F + + + W+ G F L+D+D + W ++S
Sbjct: 343 AGMRELWATGWMHNRIRVIVSSFAVKF-LLLPWKWGMKYFWDTLLDADLECDILGWQYIS 401
Query: 290 CS-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC 348
S ++ +R+ +P G KYDP G YIR +LP L +P E+I+ PW APLT+ +
Sbjct: 402 GSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGV 461
Query: 349 IIGRDYPAPVVSHDSA 364
+G +Y P+V D+A
Sbjct: 462 ELGTNYAKPIVDIDTA 477
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 133/276 (48%), Gaps = 35/276 (12%)
Query: 101 ESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160
E A+ +LR+ + +E+ + P+ T+ LS L G LS R QCL +
Sbjct: 205 EKAAIAQLRQFCQNG--AGEYEQQRDFPAV---EGTSRLSASLATGGLSPR---QCLHRL 256
Query: 161 YQNVKKHTSPPVSLV--GQLLWRDFFYTVAFGTPNFDRMKGNRICKQIP---------WS 209
+ V +L+WR+F+ + P+ +CK P W
Sbjct: 257 LAEQPQALDGGAGSVWLNELIWREFYRHLITYHPS--------LCKHRPFIAWTDRVQWQ 308
Query: 210 NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVF 269
++ L AW+E +TGYP +DA M QL GWMH+ R A FL + D+ + W +G F
Sbjct: 309 SNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK-DLLIDWREGERYF 367
Query: 270 DRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMP 328
LID D A NNG W W S + Y RI++P + G+K+D G +IR +LP L+D+P
Sbjct: 368 MSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVP 427
Query: 329 KEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+ ++EPW + K + DYP P+V H A
Sbjct: 428 GKVVHEPW------KWAQKAGVTLDYPQPIVEHKEA 457
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 13/302 (4%)
Query: 37 PLTYQSFLKL--AGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEEL 94
P Y F K A + +S+ +P+SL P V D G +VPT+E+LG +
Sbjct: 235 PDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWG-----DVPTLEKLGVEPQEVTRG 289
Query: 95 SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA-TTVLSPYLKFGCLSSRYF 153
F GGES + ++ E K+ + +++ + + L P +T SP+L FGC+S R+
Sbjct: 290 MRFVGGESAGVGRVFEYFWKKDLLKVYKETR---NGMLGPDYSTKFSPWLAFGCISPRFI 346
Query: 154 YQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDE 213
Y+ + Y+ + + ++ +L+WRD+F ++ N G Q WS D +
Sbjct: 347 YEEVQR-YEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQK 405
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
L +WR+A+TGYP IDA M +L G+M + R V FL R DM + W G + F+ L
Sbjct: 406 LFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR-DMGLDWRMGAEWFETCL 464
Query: 274 IDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
+D D N GNW + + + +R +S + YDP G Y+ +L L+ +PKE +
Sbjct: 465 LDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRH 524
Query: 334 EP 335
P
Sbjct: 525 WP 526
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 149/299 (49%), Gaps = 23/299 (7%)
Query: 80 TVEELGYKGYGQEELSPFRG-----GESEALKKLRESISDK--EWVANFEKPKGDPSAYL 132
+VEELG + ++ + G S A K L E I + ++ N +K G+
Sbjct: 187 SVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGN----- 241
Query: 133 KPATTVLSPYLKFGCLSSRYFYQC--LTDVY----QNVKKHTSPPVSLVGQLLWRDFFYT 186
+T++LSPYL FG +S R +QC + + +N + S + L G L RD+
Sbjct: 242 --STSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGL-RDYSRI 298
Query: 187 VAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLAR 246
+ F P + PW D + AWR+ RTGYP +DA M +L GWMH+ R
Sbjct: 299 ICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIR 358
Query: 247 HCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS-SFFYQYNRIYSPVS 305
V+ F + + + W+ G F L+D+D + W ++S S ++ +R+ +P
Sbjct: 359 VIVSSFAVKF-LLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAI 417
Query: 306 FGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
G KYDP G YIR +LP L +P E+I+ PW APLT+ + +G +Y P+V D+A
Sbjct: 418 QGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVIDTA 476
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 118/233 (50%), Gaps = 14/233 (6%)
Query: 136 TTVLSPYLKFGCLSSRYFYQCLTDVY--QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN 193
T+ LS L G LS R QCL + Q P + +L+WR+F+ + P
Sbjct: 236 TSRLSASLATGGLSPR---QCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPA 292
Query: 194 FDRMKG-NRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACF 252
+ + R K++ W + AW++ TGYP +DA M QL GWMH+ R A F
Sbjct: 293 LCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASF 352
Query: 253 LTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPVSFGKKYD 311
L + D+ + W G F LID D A NNG W W S + Y RI++P + G+++D
Sbjct: 353 LVK-DLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 411
Query: 312 PNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
+G +IR +LP L+D+P + I+EPW + K + DYP P+V H A
Sbjct: 412 RDGEFIRQWLPALRDIPGKAIHEPW------RWAEKAGVVLDYPRPIVEHKQA 458
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 140/284 (49%), Gaps = 15/284 (5%)
Query: 55 SPLPVSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSP---FRGGESEALKKLRES 111
+ LP S P VGD G+ VP V ELG + QE++S F GGES AL ++ +
Sbjct: 263 TKLPTSFGPPPEVGDWGH-----VPQVSELGLQ---QEKVSKGMNFVGGESAALGRVHDY 314
Query: 112 ISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPP 171
K+ + +++ + +T SP+L G LS R+ Y+ + Y+ +
Sbjct: 315 FWKKDLLKVYKETRN--GMLGADYSTKFSPWLASGSLSPRFIYEEVKR-YEKERLSNDST 371
Query: 172 VSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAI 231
++ +L+WRD+F ++ N G I WS D + AWR +TGYP IDA
Sbjct: 372 YWVLFELIWRDYFRFLSIKLANLLFQAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDAN 431
Query: 232 MVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCS 291
M +L G+M + R V FL R DM + W G + F+ L+D D N GNW + +
Sbjct: 432 MKELAATGYMSNRGRQIVCSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 490
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335
+ +R +S + YDP G ++ ++LP L+ +P+E + P
Sbjct: 491 GNDPREDRYFSIPKQAQNYDPEGEFVAYWLPELRALPREKRHSP 534
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1
Length = 478
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 131/255 (51%), Gaps = 22/255 (8%)
Query: 121 FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK--HTSPPVSLVGQL 178
F K D + +T++LS +L G +S R QC+T +++ H + +L
Sbjct: 224 FNKYNFDQEIFELNSTSMLSAHLSIGVISPR---QCVTLLFKEYPDIIHKLEECKWINEL 280
Query: 179 LWRDFFYTVAFGTPNFDRMKG-----NRICKQIPWSNDDELLAAWREARTGYPWIDAIMV 233
LWR+F+ + + PN + + NRI W N+ L W++ TGYP IDA M
Sbjct: 281 LWREFYQHLLYFYPNIGQNQSLYHWENRI----KWDNNLYYLNLWKQGNTGYPIIDAGMR 336
Query: 234 QLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWL-SCSS 292
QL++ GW+ + R A FL + ++ + W KG + F LID D+A NNGNW W+ S +
Sbjct: 337 QLKQLGWISNRLRMITASFLVK-NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGT 395
Query: 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGR 352
Y RI++P+ KK+D N +IR ++P L ++ I+ P T + +K
Sbjct: 396 DSMPYFRIFNPMLQSKKFDINAKFIRKYIPELSNVSTYNIHNPCDNNKTNKIHSK----- 450
Query: 353 DYPAPVVSHDSASKE 367
YP P++++ + K+
Sbjct: 451 -YPQPIINYYHSKKK 464
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 6/254 (2%)
Query: 78 VPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA-T 136
VPT+E LG E+ F GGES AL ++ E K+ + +++ + + L P +
Sbjct: 291 VPTLESLGLSMTKAEKGMHFVGGESAALGRVHEYFWKKDQLKVYKETR---NGMLGPDYS 347
Query: 137 TVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDR 196
T SP+L G LS RY + + Y+ + ++ +L+WRD+F ++ N
Sbjct: 348 TKFSPWLASGSLSPRYICEEVKR-YEKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIF 406
Query: 197 MKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRG 256
G + WS D L +WR+ RTGYP IDA M +L G+M + R V FL R
Sbjct: 407 HLGGPRNVESKWSQDQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVR- 465
Query: 257 DMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNY 316
DM + W G + F+ L+D D A N GNW + + + +R +S K YDP+G Y
Sbjct: 466 DMGIDWRMGAEWFETCLLDYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDGEY 525
Query: 317 IRHFLPVLKDMPKE 330
+ ++LP L+ + KE
Sbjct: 526 VAYWLPELRSIAKE 539
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 163/373 (43%), Gaps = 27/373 (7%)
Query: 2 KVKDYAST---AGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLP 58
+ D AS AGI + +HTL++P D+ PP + A++ +
Sbjct: 113 RAADVASALDDAGIALRQRWTHTLYHPDDLP-----TPPTDIDDTFTPWRKETEAAATVR 167
Query: 59 VSLSSLPPVGDVGYFEISEVPTVEELGYKGYGQEELS--PFRGGESEALKKLRESISDKE 116
S+ V VPTVE LG ++ + F GGES +++ I + +
Sbjct: 168 DPRSAPETVPTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGD 227
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVG 176
+ ++ + ++ SP+L GCLS R+ ++ + + Y++ + LV
Sbjct: 228 HLREYKTTRN--GLLGADYSSKFSPWLAAGCLSPRWLHREV-ERYEDERVANEDTYWLVF 284
Query: 177 QLLWRDFF------YTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
+L WRDFF Y F P G + I W D L W + TG P++DA
Sbjct: 285 ELAWRDFFQFQFEKYGATFFKP------GGIRERNIDWDRDRALFERWADGETGVPFVDA 338
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
M +L + G+M + R VA FL G + + W G F+ LID D A N GNW + +
Sbjct: 339 NMRELNRTGYMSNRGRQNVASFLA-GVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAG 397
Query: 291 SSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCII 350
+ +R + S ++YD + YI +LP L +P ++PW Q +
Sbjct: 398 VGNDSR-DRYFDVRSQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVEL 456
Query: 351 GRDYPAPVVSHDS 363
G DYP PVV D+
Sbjct: 457 GVDYPEPVVDIDA 469
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 130/262 (49%), Gaps = 16/262 (6%)
Query: 97 FRGGESEALKKLRESISDKEWVAN-FEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQ 155
F+GGES AL +++ + + + +A FE G +T L+P+L GC+S R+
Sbjct: 243 FKGGESNALARVKYYLWESDRLATYFETRNGMLGG---DYSTKLAPWLALGCVSPRHVVS 299
Query: 156 CLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELL 215
+ Y++ + ++ +L+WRDFF A N ++ W D+++L
Sbjct: 300 EIRR-YESERVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRASWKRDEKIL 358
Query: 216 AAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID 275
AW+ TGYP IDA M +L G+M + R VA +L D + W G D F+ L+D
Sbjct: 359 KAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLAL-DAGIDWRHGADWFEHHLLD 417
Query: 276 SDWAINNGNWLWLSCSSFFYQYNRI--YSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333
D A N GNW C++ RI ++ K YDP G YI+ ++ L ++P YI
Sbjct: 418 YDTASNWGNW----CAAAGMTGGRINRFNIAKQTKDYDPAGEYIKTWVKELAEVPAAYIA 473
Query: 334 EPWTAPLTIQTRAKCIIGRDYP 355
+P AP ++ R IG +YP
Sbjct: 474 DPNQAPRELRDR----IGLNYP 491
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 134/277 (48%), Gaps = 20/277 (7%)
Query: 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158
GE EALK+L E D E + + + + P+ T+ LS + G LS+R +
Sbjct: 359 AGEHEALKRL-EKFCD-EAIGKYAERRNIPAMQ---GTSNLSVHFASGTLSARTAIRTAR 413
Query: 159 DVYQNVKKHTSPPVSL---VGQLLWRDFFYTVAFGTPNFDRMKGNR-ICKQIPWSNDDEL 214
D N KK + + ++ WRDF+ V P K + I WS + +
Sbjct: 414 D-RNNTKKLNGGNEGIQRWISEVAWRDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDH 472
Query: 215 LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLI 274
AW + RTG+P IDA M Q+ G+MH+ R VA FL + D+ V W G F LI
Sbjct: 473 FHAWTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASFLAK-DLLVDWRMGERYFMEHLI 531
Query: 275 DSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPK---- 329
D D+A NNG W + + Q Y R+++P+ +K+DP+G+YIR ++ L+D+P+
Sbjct: 532 DGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGG 591
Query: 330 --EYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSA 364
I++P+ + G YP P+V H A
Sbjct: 592 KGGEIHDPYGRGSEKVKKKLEEKG--YPRPIVEHSGA 626
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 181/407 (44%), Gaps = 30/407 (7%)
Query: 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL-KLAGQPLWASSPLPVS 60
+ KD + GI V S + L+ P ++ + G+P + +F + P SPL
Sbjct: 121 RAKDVLTAQGIAVRSFNADLLYEPWEVTDE-LGRPFSMFAAFWERCLSMPYDPESPL--- 176
Query: 61 LSSLPP----VGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKE 116
LPP GDV +++ E+ KG + G S K L I+
Sbjct: 177 ---LPPKKIISGDVSKC-VADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPL 232
Query: 117 WVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNV-----KKHTSPP 171
+ + K D + T+ LSP+L FG +S R + L + Q +
Sbjct: 233 LEYSKNRRKADSAT-----TSFLSPHLHFGEVSVRKVFH-LVRIKQVAWANEGNEAGEES 286
Query: 172 VSL-VGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230
V+L + + R++ ++F P K PW+ D+ AWR+ RTGYP +DA
Sbjct: 287 VNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDA 346
Query: 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC 290
M +L GW+H R V+ F + + + W G F L+D+D + W +++
Sbjct: 347 GMRELWATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYITG 405
Query: 291 S-SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCI 349
+ +++RI +P G K+DPNG Y+R +LP L +P ++I+ PW AP ++ A
Sbjct: 406 TLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIE 465
Query: 350 IGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQV---SEDGLKN 393
+G +YP P+V D A L + + L + SE+GL +
Sbjct: 466 LGSNYPLPIVGLDEAKARLHEALSQMWQLEAASRAAIENGSEEGLGD 512
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 13/224 (5%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE AL LR + K E+ + D + LSPY G LS R
Sbjct: 178 GEEAALAGLRAFLEAKLPRYAEERDRLDGEG-----GSRLSPYFALGVLSPR------LA 226
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
++ ++ V +LLWRDF Y + + P + + +PW D+ L AW
Sbjct: 227 AWEAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQALPWQEDEALFRAWY 286
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E RTG P +DA M +L G++ + AR A F + + + W++ + F LL+D D A
Sbjct: 287 EGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-HLLLPWKRCEEAFRHLLLDGDRA 345
Query: 280 INNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDPNGNYIRHFLP 322
+N W W Y R+++PV G+++DP G +++ + P
Sbjct: 346 VNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAP 389
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 13/224 (5%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159
GE AL LR + K E+ + D + LSPY G LS R
Sbjct: 178 GEEAALAGLRAFLEAKLPRYAEERDRLDGEG-----GSRLSPYFALGVLSPR------LA 226
Query: 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWR 219
++ ++ V +LLWRDF Y + + P + + PW D+ L AW
Sbjct: 227 AWEAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWY 286
Query: 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWA 279
E +TG P +DA M +L G++ + AR A F + + + W++ + F LL+D D A
Sbjct: 287 EGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-HLLLPWKRCEEAFRHLLLDGDRA 345
Query: 280 INNGNWLWLSCSSF-FYQYNRIYSPVSFGKKYDPNGNYIRHFLP 322
+N W W Y R+++PV G+++DP G +++ + P
Sbjct: 346 VNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAP 389
>sp|P05066|PHR_YEAST Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHR1 PE=1
SV=1
Length = 565
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 13/232 (5%)
Query: 100 GESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRY-----FY 154
E AL +L++ + K N EK YL T+ LS Y+ G +S+R F
Sbjct: 307 SEEAALSRLKDFLGTKSSKYNNEKDM----LYL-GGTSGLSVYITTGRISTRLIVNQAFQ 361
Query: 155 QCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRI-CKQIPWSNDDE 213
C + K S + + ++ WRDF+ P R+ I W N+
Sbjct: 362 SCNGQIMSKALKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPV 421
Query: 214 LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273
W TG P +DAIM +L G++++ +R A FL++ ++ + W G F + L
Sbjct: 422 AFEKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSK-NLLIDWRWGERWFMKHL 480
Query: 274 IDSDWAINNGNWLWLSCSSFFYQ-YNRIYSPVSFGKKYDPNGNYIRHFLPVL 324
ID D + N G W + S + Q Y R+++ KKYDP +++ ++P L
Sbjct: 481 IDGDSSSNVGGWGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL 532
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 130/313 (41%), Gaps = 33/313 (10%)
Query: 43 FLKLAGQPLWASSPLPVSLSSLPPV------------GDVGYFEISEVPTV-EELGYKGY 89
F + L++ LP L+ LP + ++ +P++ + + Y G+
Sbjct: 139 FHETPNNTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSLPKNISYPGF 198
Query: 90 GQEELSP-----FRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLK 144
E L+ F GGE AL L S E +++ + + ++T SP+L
Sbjct: 199 KAETLNELASDDFEGGERAALTHLTSYFSG-ESAGTYKQTRNALDDF--SSSTKFSPWLA 255
Query: 145 FGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN----FDRMKGN 200
GCLS R L Y+ + +LLWR++F+ A F + G
Sbjct: 256 QGCLSVRQIMAALR-AYETEFGENESSYWISFELLWREYFFWYALKHGKRLFAFSGLSG- 313
Query: 201 RICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA-CFLTRGDMF 259
K S E W T YP ++A M QL G+M + R VA CF+ ++
Sbjct: 314 ---KSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNATGYMSNRGRQLVASCFVH--ELS 368
Query: 260 VHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRH 319
+ W G F++ LID D + N GNW +L+ + +R ++ ++YDP+ +I
Sbjct: 369 LDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGHRQFNLEKQTERYDPDNEFIER 428
Query: 320 FLPVLKDMPKEYI 332
+ L P + +
Sbjct: 429 WAGDLSGQPIDSV 441
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 118/288 (40%), Gaps = 48/288 (16%)
Query: 92 EELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPA-TTVLSPYLKFGCLSS 150
E PFRGGE+ A K++ + + K + L P +T LS YL GC+++
Sbjct: 259 ESSHPFRGGETSAHKRIDHLV----LSGGMKSYKDSRNGLLGPDFSTKLSAYLAQGCVTA 314
Query: 151 RYFYQCL-------------TDVYQNVKKHTSPPVSLVGQLLWRDF------------FY 185
R + L D + + V + +LLWRD+ F
Sbjct: 315 RQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRM--ELLWRDYMRLCHQKYGDKLFR 372
Query: 186 TVAFGTPNFD----------RMKGNRIC--KQIPWSND-DELLAAWREARTGYPWIDAIM 232
F + D R I Q P E+LA + TG IDA
Sbjct: 373 VEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTGMGLIDASQ 432
Query: 233 VQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CS 291
+L G+ + R VA FL + + + W G + ++ LL+D D + N NW +++
Sbjct: 433 RELIHTGYTSNRTRQNVASFLAK-HLEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAGVG 491
Query: 292 SFFYQYNRIYSPVSFGKKYDPNGNYIRHFLP-VLKDMPKEYIYEPWTA 338
+ RI++PV YD +G Y+R ++P V K E +++ WTA
Sbjct: 492 NDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKFENLENVFQAWTA 539
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 13/285 (4%)
Query: 133 KPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTP 192
+ A + +SPYL +G +S R YQ L + +V ++L +L W F
Sbjct: 224 RHACSRMSPYLAWGNISLREMYQTLLKHW-SVAGFRRSLIALSSRLHWHCHFIQKFESEC 282
Query: 193 NFDRMKGNRICKQIPWSNDDE---LLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCV 249
+ NR + + D LAAW+ TG P +DA M L + G+++ R +
Sbjct: 283 EMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAML 342
Query: 250 ACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKK 309
LT M V W G +L +D + I+ + + RIY+P ++
Sbjct: 343 VSVLTH-HMNVDWRAGVTYLAQLFLDFEPGIHYPQFQ-MQAGVTGTNTIRIYNPTKQAQE 400
Query: 310 YDPNGNYIRHFLPVLKDMPKEYIYEPW-TAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368
+D G +I ++P L +P ++EPW PL Q + + Y PV+ ++++K+
Sbjct: 401 HDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQM-YQVPLESPYLKPVMDLEASAKQA 459
Query: 369 KRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGEENQESGRRQKQK 413
+ +L + QKL V + ++ L R + + S R+ ++
Sbjct: 460 RDRLWQW----QKLPA-VQAEAMRILARHVRQAKPRTSPRQPNKR 499
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 111/259 (42%), Gaps = 21/259 (8%)
Query: 62 SSLPPVGDVGYFEISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANF 121
S LPP+ + +++PT+ + +E + F GGE L R +
Sbjct: 174 SRLPPMP-----KGAQLPTLSSFYF-----DESALFSGGEWSGLAHCRRYFFSGLASSYK 223
Query: 122 EKPKG-DPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLLW 180
E G D AY +T SP+L GC+S R + L Y+ + + +LLW
Sbjct: 224 ETRNGLDGMAY----STKFSPWLALGCVSPRMIHAMLKQ-YEQTQGANDSTYWIYFELLW 278
Query: 181 RDFFYTVAFG-TPNFDRMKGNRICKQIPWSN-DDELLAAWREARTGYPWIDAIMVQLRKW 238
R++FY A R G R Q P ++ W+ T YP ++A M QL
Sbjct: 279 REYFYWYARCYQQRLFRFGGIR--NQPPLTSFYAHRFQQWKNGTTPYPIVNACMHQLNHT 336
Query: 239 GWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYN 298
G+M + R VA L ++ + W G F+ LID D N GNW +L+ + +
Sbjct: 337 GYMSNRGRQLVASCLVH-ELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRGS 395
Query: 299 RIYSPVSFGKKYDPNGNYI 317
R ++ + YDPN +I
Sbjct: 396 RQFNLEKQTQMYDPNHEFI 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,111,863
Number of Sequences: 539616
Number of extensions: 8340557
Number of successful extensions: 17035
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 16828
Number of HSP's gapped (non-prelim): 120
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)