Query 014577
Match_columns 422
No_of_seqs 237 out of 1626
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02766 crypt_chrom_pln cryp 100.0 4E-99 9E-104 791.1 29.6 357 1-372 106-474 (475)
2 COG0415 PhrB Deoxyribodipyrimi 100.0 2.5E-99 5E-104 773.9 25.2 347 2-374 110-459 (461)
3 TIGR03556 photolyase_8HDF deox 100.0 6.3E-92 1.4E-96 735.3 28.7 354 1-373 109-469 (471)
4 PRK10674 deoxyribodipyrimidine 100.0 1.6E-91 3.4E-96 732.5 28.7 351 2-375 116-468 (472)
5 PF03441 FAD_binding_7: FAD bi 100.0 8.2E-89 1.8E-93 667.1 12.1 272 99-376 1-277 (277)
6 TIGR02765 crypto_DASH cryptoch 100.0 4.7E-81 1E-85 646.9 28.1 312 2-324 116-429 (429)
7 KOG0133 Deoxyribodipyrimidine 100.0 2E-70 4.4E-75 565.8 13.5 380 2-382 114-500 (531)
8 TIGR00591 phr2 photolyase PhrI 100.0 7.2E-67 1.6E-71 544.7 13.6 291 2-320 133-454 (454)
9 COG3046 Uncharacterized protei 99.9 8E-23 1.7E-27 203.0 17.0 298 4-325 110-435 (505)
10 PF00875 DNA_photolyase: DNA p 98.3 2.4E-07 5.2E-12 83.9 2.0 50 2-52 108-157 (165)
11 COG1087 GalE UDP-glucose 4-epi 73.8 2.3 5E-05 42.6 2.4 78 271-374 151-243 (329)
12 COG3590 PepO Predicted metallo 39.4 15 0.00033 39.7 1.4 44 274-323 476-519 (654)
13 PF03392 OS-D: Insect pheromon 33.2 14 0.0003 30.6 -0.1 13 308-320 83-95 (95)
14 PF04104 DNA_primase_lrg: Euka 29.7 59 0.0013 31.7 3.7 46 226-273 110-155 (260)
15 KOG3426 NADH:ubiquinone oxidor 22.6 1E+02 0.0022 26.4 3.3 26 356-381 12-39 (124)
16 PF11994 DUF3489: Protein of u 22.5 66 0.0014 25.4 2.0 25 236-261 32-56 (72)
17 PRK02249 DNA primase large sub 20.7 1.7E+02 0.0036 30.0 5.1 44 226-271 224-267 (343)
No 1
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=100.00 E-value=4e-99 Score=791.10 Aligned_cols=357 Identities=27% Similarity=0.483 Sum_probs=298.4
Q ss_pred CHHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCC-CCCCCCCCCCCCCCCCCCccCCCCC
Q 014577 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWAS-SPLPVSLSSLPPVGDVGYFEISEVP 79 (422)
Q Consensus 1 ~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~-~p~p~~~~~~~~~~~~~~~~~~~~p 79 (422)
++|+++|.+.||+++.|++++|++|++|.++.+ ++|+|||+|++++.+....+ ++.+.+. .++ .+. ...+
T Consensus 106 ~~v~~~l~~~gi~~~~~~~~~l~~p~~i~~~~~-~~~~~ft~f~~~~~~~~~~~~~~~~~p~-~~~-~~~------~~~~ 176 (475)
T TIGR02766 106 HRAKEVLTAQGISVQSFNADLLYEPWEVYDELG-RPFTMFAAFWERCLSMPYDPESPLLPPK-KII-SGD------VSKC 176 (475)
T ss_pred HHHHHHHHHcCCEEEEecCCEEEChhhhcccCC-CCCCeecHHHHHHHhccCCCCCCCCCcc-ccC-CCc------cccC
Confidence 368899999999999999999999999999766 99999999999975532111 1121111 010 000 0011
Q ss_pred ChhhcCCCCCC---CCC--CCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHH
Q 014577 80 TVEELGYKGYG---QEE--LSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154 (422)
Q Consensus 80 ~l~~lg~~~~~---~~~--~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~ 154 (422)
+++.+++.... ... ...|+|||++|+++|+.|++++ +.+|+.+||.|+ ..+||+|||||+|||||||+|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~--~~~Y~~~Rd~p~---~~~tS~LSPyL~~G~ISpR~v~ 251 (475)
T TIGR02766 177 SADDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGP--LLEYSKNRKKAD---SATTSLLSPYLHFGEVSVRKVF 251 (475)
T ss_pred ChhhcCCCCcccccccccccccCCCccHHHHHHHHHHHHHH--HHHHhhcCCCCC---CCCCCCCCcccccCcccHHHHH
Confidence 12233331100 001 1248999999999999999865 899999999987 4799999999999999999999
Q ss_pred HHHHHHH-----HhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHH
Q 014577 155 QCLTDVY-----QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWID 229 (422)
Q Consensus 155 ~~~~~~~-----~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VD 229 (422)
+++.... ........+.++|++||+|||||+++++++|.+......+.++.++|+++++.|++|++|+|||||||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~s~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~f~aW~~G~TG~P~VD 331 (475)
T TIGR02766 252 HLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHEKPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVD 331 (475)
T ss_pred HHHHhhhhhhhhcccCCCcccHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhcCCCCCCHHHHHHHHcCCCCCcchh
Confidence 9985311 11111234668899999999999999999997765555555678999999999999999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccc
Q 014577 230 AIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGK 308 (422)
Q Consensus 230 AaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~ 308 (422)
||||||++|||||||+|||||||||| +|+||||.|++||+++|||||+|+|+|||||+| +|+|+.||||||||++|++
T Consensus 332 A~MRqL~~TGwmhnR~Rm~vAsfl~k-~L~idWr~G~~~F~~~LiD~D~a~N~g~Wqw~Ag~g~d~~~~~RifnP~~q~~ 410 (475)
T TIGR02766 332 AGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 410 (475)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHc-ccCCChHHHHHHHHHHccccchhcccccccccccCCCCCCcccccCCHHHHHh
Confidence 99999999999999999999999999 999999999999999999999999999999999 6778899999999999999
Q ss_pred cCCCCcchhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHH
Q 014577 309 KYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372 (422)
Q Consensus 309 k~Dp~G~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~ 372 (422)
+|||+|+|||||||||+++|+++||+||+++..+|+++||.||.+||.|||||+++|++|++++
T Consensus 411 ~~Dp~g~yir~wvPeL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~~~~~~ 474 (475)
T TIGR02766 411 KFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEAL 474 (475)
T ss_pred hcCCCcccHHHhChhhccCCHHHhcCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999764
No 2
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-99 Score=773.88 Aligned_cols=347 Identities=31% Similarity=0.625 Sum_probs=297.3
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCC-ccCCCCCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGY-FEISEVPT 80 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~-~~~~~~p~ 80 (422)
+|+..|.+.||.+++|+|++|++|++|.+..| ++|+|||||+++|.+......|.+.+.. +..+.+... ......|+
T Consensus 110 al~~~l~~~gi~~~~~~d~~l~~p~~~~t~~~-~~y~vfT~F~k~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~P~ 187 (461)
T COG0415 110 ALAQPLTEVGIAVHSFWDALLHEPGEVRTGSG-EPYKVFTPFYKAWRDRLRILRPVPAPDV-LDALRDEEPPPEEISLPD 187 (461)
T ss_pred HHHHHHHhcCceEEEeccccccCHhhccCCCC-CCccccchHHHHHHHhcccCCCCCCcch-hccccccccCcccccCCc
Confidence 57889999999999999999999999999987 9999999999999776321122222110 111111000 01111222
Q ss_pred hhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHH
Q 014577 81 VEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160 (422)
Q Consensus 81 l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~ 160 (422)
+ .......|.|||++|+++|++|+..+ +.+|++.||+|. .++||+|||||+||+||||+||+++.+.
T Consensus 188 -----~---~~~~~~~~~~Ge~aA~~~l~~F~~~~--l~~Y~~~Rd~p~---~~~TS~LSpyL~~G~IS~r~v~~~~~~~ 254 (461)
T COG0415 188 -----F---SKFDVLLFTGGEKAALARLQDFLAEG--LDDYERTRDFPA---LDGTSRLSPYLAFGVISPREVYAALLAA 254 (461)
T ss_pred -----c---ccccccCCCchHHHHHHHHHHHHHHH--HHHHHHhcCCcc---cccccccCHHHHcCCcCHHHHHHHHHHh
Confidence 0 11123468999999999999999876 999999999998 6899999999999999999999999876
Q ss_pred HHhccCCCCChHHHHHHHHHHHHHHHHHHcCCCc-cccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 014577 161 YQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNF-DRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239 (422)
Q Consensus 161 ~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~-~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tG 239 (422)
... ...++.+|++||+|||||+|+++++|.. ...+.......++|.+|+..|++|++|+|||||||||||||++||
T Consensus 255 ~~~---~~~~~~~~~~eL~WREFy~h~~~~~p~~~~~~~~~~~~~~~~w~~~~~~f~aW~~G~TGyPIVDA~MRqL~~TG 331 (461)
T COG0415 255 ESD---AREGTAALINELIWREFYQHLLYHYPSLSRFEPFAEKTLNIPWEDNPAHFQAWQEGKTGYPIVDAAMRQLNQTG 331 (461)
T ss_pred hhc---ccchHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCccccCHHHHHHHhcCCCCCccccHHHHHHHHhC
Confidence 642 2456789999999999999999999887 555666667889999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhh
Q 014577 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIR 318 (422)
Q Consensus 240 wmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr 318 (422)
||||||||+||||||| +|.||||+|++||+++|||||+|+|+|||||+| +|+|+.||||||||++|+++|||+|.|||
T Consensus 332 ~MHNR~RMivAsFL~k-~L~IdWR~GE~~F~~~LiD~D~asN~ggWQW~AstG~Da~pyfRiFNp~~Q~~kfDp~g~fIr 410 (461)
T COG0415 332 YMHNRMRMIVASFLTK-DLLIDWREGEKYFMRQLIDGDPASNNGGWQWAASTGTDAAPYFRIFNPVTQAEKFDPDGEFIR 410 (461)
T ss_pred CcchHHHHHHHHHHHH-hcCCCHHHHHHHHHHhccCCCcccCCCCeeEEeccCCCCCcceeccCHHHHHhhcCCCcccHH
Confidence 9999999999999999 999999999999999999999999999999999 57778899999999999999999999999
Q ss_pred hhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHH
Q 014577 319 HFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGE 374 (422)
Q Consensus 319 ~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~ 374 (422)
+|||||++||+++||+||+++. +.+|.+||.|||||+++|++|+++|+.
T Consensus 411 ~wvPeL~~~~~~~ih~p~~~~~-------~~~~~~YP~piVd~~~~r~~a~~~y~~ 459 (461)
T COG0415 411 RWVPELRNLPDKYIHEPWELSE-------VVLGVDYPKPIVDHKESREQALAAYEA 459 (461)
T ss_pred hhCHHhhCCChhhccChhhccc-------ccccCCCCccccccHHHHHHHHHHHHh
Confidence 9999999999999999999886 568899999999999999999977664
No 3
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=100.00 E-value=6.3e-92 Score=735.28 Aligned_cols=354 Identities=30% Similarity=0.536 Sum_probs=292.7
Q ss_pred CHHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCC--CCCCCCCCC--CCCccCC
Q 014577 1 MKVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVS--LSSLPPVGD--VGYFEIS 76 (422)
Q Consensus 1 ~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~--~~~~~~~~~--~~~~~~~ 76 (422)
++|++.|.+.||++++++|++|++|++|.+.+| ++|+|||+|++++.....+ .|.+.+ ...+++... .......
T Consensus 109 ~~v~~~l~~~~i~~~~~~~~~l~~p~~i~~~~~-~~y~~ft~f~k~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~ 186 (471)
T TIGR03556 109 RAVAAALKEAGIAVVTLWDQLLHSPDEILTGSG-NPYTVYTPFWKNWSSLPKP-TPVATPTELEGLTEAELEAAAPLGVI 186 (471)
T ss_pred HHHHHHHHHCCCEEEEeCCcEEECccccccCCC-CCCcchhHHHHHHHhcccc-CCCCCccccccCCccccccccccccc
Confidence 368899999999999999999999999998876 9999999999998654321 122211 111110000 0001122
Q ss_pred CCCChhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHH
Q 014577 77 EVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC 156 (422)
Q Consensus 77 ~~p~l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~ 156 (422)
.+|+++++++.... ...|+|||.+|+++|+.|++.+ +.+|...|+.|. .++||+|||||+|||||+|+|+++
T Consensus 187 ~~p~~~~~~~~~~~---~~~~~gGe~~A~~~L~~f~~~~--l~~Y~~~r~~p~---~~~tS~LSpyL~~G~iS~r~v~~~ 258 (471)
T TIGR03556 187 ALPTAKDLGFDWDG---DLILEPGETAAQARLEEFCDRA--IADYQEQRNFPA---LDGTSQLSPALKFGVIGIRTVWQA 258 (471)
T ss_pred cCCccccccccccc---ccCCCCcHHHHHHHHHHHHHHH--HHHhhhccCCCC---CCCCCCCChhhcCCcccHHHHHHH
Confidence 35666666553211 2258999999999999999864 999999999987 579999999999999999999999
Q ss_pred HHHHHHhc--cCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHH
Q 014577 157 LTDVYQNV--KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234 (422)
Q Consensus 157 ~~~~~~~~--~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRq 234 (422)
+.+..... .....+.++|++||+|||||+++++++|.+...+.++.+..++|+.+++.|++|++|+||||||||||||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~W~~G~TG~P~vDAaMrq 338 (471)
T TIGR03556 259 TQEAHENSRSEEARNSIRTWQQELAWREFYQHALYHFPELADGPYRSLFQNFPWENNEAHFQAWCEGRTGYPIVDAAMRQ 338 (471)
T ss_pred HHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHCcchhccccchhhhcCCCcCCHHHHHHHhcCCCCCCcccHHHHH
Confidence 97654321 1123456789999999999999999888776655666677889999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCC
Q 014577 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPN 313 (422)
Q Consensus 235 L~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~ 313 (422)
|++|||||||+||+||||||| +|+|||++|++||+++|||||+|+|+|||||+| +|+|+.| ||||||++|++||||+
T Consensus 339 L~~tG~mhnr~Rm~vAsfl~k-~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~a~~G~d~~p-~R~fnp~~q~~k~Dp~ 416 (471)
T TIGR03556 339 LNETGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQKLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPE 416 (471)
T ss_pred HHHhCCccHHHHHHHHHHHHc-ccCCCHHHHHHHHHHHhhhcChhhccccccchhcCCCCCCC-CcccCHHHHHHHhCCC
Confidence 999999999999999999999 999999999999999999999999999999999 5777777 8999999999999999
Q ss_pred cchhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHH
Q 014577 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373 (422)
Q Consensus 314 G~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~ 373 (422)
|+|||+|||||+++|+++||+||.++. .+. ..+||.|||||+++|++|+++|+
T Consensus 417 G~yIr~w~PeL~~~p~~~ih~p~~~~~-~~~------~~~YP~Pivd~~~~r~~~~~~~~ 469 (471)
T TIGR03556 417 AEYIRRWLPELRSVDTKDLVTGKITPL-ERR------AVGYPLPIVDHNQQQQLFKQLYQ 469 (471)
T ss_pred CchHHHhCHhhccCCHhhhcCcccCch-hhh------ccCCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999987763 332 23799999999999999997665
No 4
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=100.00 E-value=1.6e-91 Score=732.51 Aligned_cols=351 Identities=27% Similarity=0.475 Sum_probs=285.0
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCh
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTV 81 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p~l 81 (422)
+|++.|. ||.++.|++++|++|+.|.+.++ ++|+|||+|+++|........|.+.+.+.. .+.. . ...+++
T Consensus 116 ~v~~~l~--~i~~~~~~~~~l~~~~~i~~~~~-~~y~~ft~f~~~~~~~~~~~~p~~~~~p~~--~~~~---~-~~~~~~ 186 (472)
T PRK10674 116 AVERALR--NVVCQGFDDSVLLPPGSVMTGNH-EMYKVFTPFKNAFLKRLREGDPECVPAPKV--RSSG---A-IEPLPP 186 (472)
T ss_pred HHHHHcC--CCEEEEecCceEeCccccccCCC-CCCCcccHHHHHHHHhhcccCCccCCCCcc--cccc---c-cCCCCc
Confidence 5667774 89999999999999999999877 999999999999865321111111110100 0000 0 011222
Q ss_pred hhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHH
Q 014577 82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY 161 (422)
Q Consensus 82 ~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~ 161 (422)
..+++.... .....|+|||++|+++|++|++++ +.+|+..|+.|. .++||+|||||+|||||+|+|++++.+..
T Consensus 187 ~~~~~~~~~-~~~~~~~gGe~~A~~~L~~f~~~~--l~~Y~~~r~~p~---~~~tS~LSPyL~~G~iS~r~v~~~~~~~~ 260 (472)
T PRK10674 187 IPFNYPQQS-FDTALFPVGEKAAIAQLRQFCQQG--AGEYEQQRDFPA---VDGTSRLSAYLATGVLSPRQCLHRLLAEQ 260 (472)
T ss_pred ccccCcccc-cccCCCCCCHHHHHHHHHHHHHHH--HHHhccccCCCC---ccCCCCcChhhccCcCCHHHHHHHHHHHh
Confidence 223221101 112348999999999999999864 999999999887 57999999999999999999999997643
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHcCCCcccc-ccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcc
Q 014577 162 QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRM-KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240 (422)
Q Consensus 162 ~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~-~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGw 240 (422)
.... ...+.+.|++||+|||||+++++++|.+... ..++....++|+++++.|++|++|+|||||||||||||++|||
T Consensus 261 ~~~~-~~~~~~~fl~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~~w~~~~~~~~~W~~G~TG~P~vDA~mrqL~~tG~ 339 (472)
T PRK10674 261 PQAL-DGGAGSVWLNELIWREFYRHLMVAYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQQGKTGYPIVDAAMRQLNSTGW 339 (472)
T ss_pred hhhh-ccCchhHHHHHHHHHHHHHHHHHhCCchhhccCcchhhhccCcccCHHHHHHHHcCCCCCccHHHHHHHHHHHCC
Confidence 2211 1123457999999999999999999987543 3344456788999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhhh
Q 014577 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRH 319 (422)
Q Consensus 241 mHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~ 319 (422)
||||+||+||||||| +|+||||.|++||+++|||||+|+|+|||||+| +|+|+.||||||||++|++||||+|+|||+
T Consensus 340 mhnr~Rm~vAsfL~k-~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~ag~G~d~~py~R~fnP~~q~~k~Dp~g~yIr~ 418 (472)
T PRK10674 340 MHNRLRMITASFLVK-DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFIRR 418 (472)
T ss_pred ccHHHHHHHHHHHHc-CcccCCHhHHHHHHHHhhcCCcccchhccceeecCCCCCCcceeecCHHHHHHHhCCCCChHHH
Confidence 999999999999999 999999999999999999999999999999999 588899999999999999999999999999
Q ss_pred hcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 014577 320 FLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375 (422)
Q Consensus 320 wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~ 375 (422)
|||||+++|+++||+||+++.. .+|. .|||+|||||+++|++|+++|+.+
T Consensus 419 w~PeL~~~p~~~ih~Pw~~~~~----~~~~--~~YP~PiVd~~~~r~~~~~~~~~~ 468 (472)
T PRK10674 419 WLPELRDVPGKAIHQPWRWAEK----AGVT--LDYPQPIVDHKQARLATLAAYEAA 468 (472)
T ss_pred hChhhccCCHHhhcCccccchh----cCCC--CCCCcCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999998742 3443 489999999999999999887754
No 5
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite.; InterPro: IPR005101 This entry represents a multi-helical domain composed of two all-alpha subdomains that is found as the C-terminal domain in cryptochrome proteins, as well as at the N-terminal of DNA photolyase where it acts as a FAD-binding domain (the N-terminal of DNA photolyase binds a light-harvesting cofactor). Photolyases and cryptochromes are related flavoproteins that bind FAD. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes (CRY1 and CRY2) are blue light photoreceptors that mediate blue light-induced gene expression [, ]. DNA photolyases are DNA repair enzymes that repair mismatched pyrimidine dimers induced by exposure to ultra-violet light. They bind to UV-damaged DNA containing pyrimidine dimers and, upon absorbing a near-UV photon (300 to 500 nm), they catalyse dimer splitting, breaking the cyclobutane ring joining the two pyrimidines of the dimer so as to split them into the constituent monomers; this process is called photoreactivation. DNA photolyases require two choromophore-cofactors for their activity. All monomers contain a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm [, ].; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 3ZXS_A 1DNP_A 2XRZ_B 2XRY_A 2VTB_A 2J4D_B 2IJG_X 3TVS_A 2E0I_D ....
Probab=100.00 E-value=8.2e-89 Score=667.06 Aligned_cols=272 Identities=43% Similarity=0.861 Sum_probs=239.5
Q ss_pred ccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhccCCCCChHHHHHHH
Q 014577 99 GGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQL 178 (422)
Q Consensus 99 gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~f~~eL 178 (422)
|||++|+++|+.|++.+ +..|+..||.|. .++||+|||||+|||||||+|++++.+..........+.++|++||
T Consensus 1 GGe~~A~~~L~~Fl~~~--l~~Y~~~r~~p~---~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~f~~eL 75 (277)
T PF03441_consen 1 GGETAALKRLEEFLKER--LADYGEQRDDPA---ADGTSRLSPYLNFGCLSPREVYRAVKKAQEANDAHSESAEKFIREL 75 (277)
T ss_dssp SSHHHHHHHHHHHHHHC--GGGHHHHTT-TT---STTS---HHHHHTTSS-HHHHHHHHHHHHHCHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--HHhhchhccCCC---cCCcCcccHHHhCCCcCHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 89999999999999865 999999999986 5799999999999999999999999887651111124578999999
Q ss_pred HHHHHHHHHHHcCCCcc-ccccccccCCCCCC---CCHHHHHHHHcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 014577 179 LWRDFFYTVAFGTPNFD-RMKGNRICKQIPWS---NDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 254 (422)
Q Consensus 179 ~WRef~~~~~~~~p~~~-~~~~~~~~~~~~w~---~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFLt 254 (422)
+|||||+++++++|++. ..++++.+..++|. .+.+.|++|++|+||+||||||||||++|||||||+||+||||||
T Consensus 76 ~WRef~~~~~~~~p~~~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~G~TG~p~vDAamrqL~~tG~mHn~~R~~vasfl~ 155 (277)
T PF03441_consen 76 IWREFYRQLLYHNPNLDMFENFNPKFRQIPWEDDRENPELFEAWCEGRTGYPLVDAAMRQLRQTGWMHNRLRMIVASFLT 155 (277)
T ss_dssp HHHHHHHHHHHHSGGCTCSSTSSTTCCCSHCBTSBSTHHHHHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcchhhhhccHHHHhhhhcccccCHHHHHHHHcCCCCChHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 99999999999999887 66778888889994 678899999999999999999999999999999999999999999
Q ss_pred hccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhhhhcccccCCCCCccc
Q 014577 255 RGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333 (422)
Q Consensus 255 kg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p~~~ih 333 (422)
| +|+|||+.|++||+++|||||+|+|++||||+| +|++..||||||||++|+++|||+|+|||||||||+++|+++||
T Consensus 156 k-~l~i~W~~g~~~f~~~liD~d~a~n~~~wqw~ag~g~d~~~~~r~~np~~q~~~~Dp~g~~ir~w~PeL~~~~~~~ih 234 (277)
T PF03441_consen 156 K-DLLIDWREGAEWFAEHLIDYDPASNYGNWQWAAGTGTDAKPYFRIFNPVKQSKKFDPDGEYIRRWVPELADLPDEYIH 234 (277)
T ss_dssp H-TSHBHHHHHHHHHHHHHTT--HHHHHHHHHHHTTSSSTGCSTTTHHHHHHHHHHHSTTSHHHHHHSGGGTTSTHHHHT
T ss_pred H-hccCCccccHHHHHHHhhccCcchHHHHHHHHHhhccccCccccccCchHHHHhhCcHHHHHHHHHHHHhcCChhhee
Confidence 9 999999999999999999999999999999999 46678899999999999999999999999999999999999999
Q ss_pred CCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 014577 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376 (422)
Q Consensus 334 ~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~ 376 (422)
+||+++..+|+++||++|.+||+|||||+++|++|+++|+++|
T Consensus 235 ~p~~~~~~~~~~~~~~~~~~YP~pivd~~~~r~~~~~~~~~~~ 277 (277)
T PF03441_consen 235 EPWKAPPAVQKAAGCVLGNDYPKPIVDHKEARKRALKRYKAAY 277 (277)
T ss_dssp SCHGSHHHHHHHCT-CTTTSSBTSSSHHHHHHHHHHHHHHHH-
T ss_pred ChhccChHHHHHhCCccCCCCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998875
No 6
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=100.00 E-value=4.7e-81 Score=646.92 Aligned_cols=312 Identities=29% Similarity=0.494 Sum_probs=245.9
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCh
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTV 81 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p~l 81 (422)
+|++.|.+.||.++.+++++|++|++|++..+ ++|++||+|++++........+.|.+.. ++..+... ....+|++
T Consensus 116 ~v~~~l~~~~i~~~~~~~~~l~~p~~v~~~~~-~~~~~ft~f~~~~~~~~~~~~~~~~p~~-~~~~~~~~--~~~~~~~l 191 (429)
T TIGR02765 116 LLQQALARLGIHVEQHWGSTLYHEDDLPFDLE-DLPDVFTQFRKQVEAKCSIRPPLPAPEK-LPPLPSVD--DPGWIPTL 191 (429)
T ss_pred HHHHHHHhcCceEEEecCCEeECHHhcCCCCC-CCCCCchHHHHHHHhhCCCCCCCCCccc-CCCCcccc--cccCCCCh
Confidence 67888999999999999999999999999876 9999999999998642211122221111 11111100 11124566
Q ss_pred hhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHH
Q 014577 82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY 161 (422)
Q Consensus 82 ~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~ 161 (422)
+++++..........|+|||.+|+++|++|+..+ .+..|+..||.+.. .++||+|||||+|||||||+|++++.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~-~l~~Y~~~R~~~~~--~~~tS~LSpyL~~G~iS~r~v~~~~~~~~ 268 (429)
T TIGR02765 192 EDLGEESSEVDRGLPFVGGETAGLARLKEYFWSK-DLKSYKETRNGMLG--PDYSTKFSPWLALGCVSPRQIYEELQRYE 268 (429)
T ss_pred hhcCCCcccccccCCcCchHHHHHHHHHHHHhhc-cHhhhhhccCcccC--CCCcCccCHHHhCCcccHHHHHHHHHHHH
Confidence 6565432111112348999999999999999742 38899999998652 56899999999999999999999987632
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHcCCC-ccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcc
Q 014577 162 QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPN-FDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240 (422)
Q Consensus 162 ~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~-~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGw 240 (422)
... ....+.+.+++||+|||||+++++++|. +...... ....++|..+++.|++|++|+|||||||||||||++|||
T Consensus 269 ~~~-~~~~~~~~~~~eL~WRef~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~W~~G~TG~PivDAamrqL~~TG~ 346 (429)
T TIGR02765 269 TER-GANDSTYWVIFELLWRDYFRFYALKYGNRLFRFGGL-RGKHPKWSFDAKRFEQWKTGTTGYPLVDANMRELNATGF 346 (429)
T ss_pred hhc-ccCCCcHHHHHHHHHHHHHHHHHHHcCCcccccCCC-ccCCCCCccCHHHHHHHhCCCCCChhhhHHHHHHHHhCC
Confidence 211 1122345677899999999988776653 2222111 124678999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhhh
Q 014577 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRH 319 (422)
Q Consensus 241 mHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~ 319 (422)
||||+||+||||||| +|+||||+|++||+++|||||+|+|+|||||+| +|+|+.| ||||||++|++||||+|+||||
T Consensus 347 mhnr~Rm~vAsFl~k-~L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~ag~g~d~~~-~Rifnp~~q~~k~Dp~g~yir~ 424 (429)
T TIGR02765 347 MSNRGRQNVASFLVK-DLGLDWRYGAEWFETQLVDYDVCSNWGNWQYLAGVGNDPRG-SRQFNIEKQAQDYDPDGEYVAT 424 (429)
T ss_pred CCHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHhhccchhcCcccchhhhcCcCCCCc-CccCCHHHHHHhcCCCCCcHHH
Confidence 999999999999999 999999999999999999999999999999999 5666677 9999999999999999999999
Q ss_pred hcccc
Q 014577 320 FLPVL 324 (422)
Q Consensus 320 wvPEL 324 (422)
|||||
T Consensus 425 wvPeL 429 (429)
T TIGR02765 425 WVPEL 429 (429)
T ss_pred hcCCC
Confidence 99997
No 7
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms]
Probab=100.00 E-value=2e-70 Score=565.79 Aligned_cols=380 Identities=47% Similarity=0.822 Sum_probs=320.7
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCC-CCCCCCCCCCCCC--CCccCCCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPL-PVSLSSLPPVGDV--GYFEISEV 78 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~-p~~~~~~~~~~~~--~~~~~~~~ 78 (422)
.|+..|.+.|+.+.+...+++++|+.++.+++|++|.+|+.|+.....+..+..|. +......+..+.. .......+
T Consensus 114 ~~~~~a~~l~i~v~s~~s~~~~~~~~~i~~n~~k~pls~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~v 193 (531)
T KOG0133|consen 114 TIKSLATELGLSVVSPVSHTLYLPDKIIEANGGKPPLSYKTFRGVCQSMSAPKIPALVLSGLAVEKHPNFLANSKASAVV 193 (531)
T ss_pred HHHHHHHHhhhhhcccCchhhhcHHHHHHhcCCCCccccccccccccccccccccccccccccCCCChhhhhhccccccc
Confidence 47788999999999999999999999999999999999999999877664332221 1111111111111 11223457
Q ss_pred CChhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHH--H
Q 014577 79 PTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQ--C 156 (422)
Q Consensus 79 p~l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~--~ 156 (422)
|+++.+++...... ...|+||++.|+.+|++|+...-+.+++..+..++......+++.|||||+|||||+|.+++ .
T Consensus 194 ~~~e~l~~~~~~~~-~~~~~~g~s~al~~l~~~l~~~~~~an~~~~~~~~~~~~~~s~~~Ls~yL~fg~~svr~~~~~~~ 272 (531)
T KOG0133|consen 194 PTLELLRFIPSNYG-EVVWRGGESEALKRLDAHLKVPLWVANLELRYSNANSRVKISTTVLSPYLKFGCLSVRYFYRCVR 272 (531)
T ss_pred CCchhhccCccccc-ccccCCcccchhHHHHHHhhHHHHHhhhhccccccchhcCCCccccccceeeccceeEeehhHhH
Confidence 88888876322222 22389999999999999998765667777776665542246788999999999999999995 3
Q ss_pred HHHHHHhccCCCCChHH-HHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHH
Q 014577 157 LTDVYQNVKKHTSPPVS-LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQL 235 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~~~-f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL 235 (422)
+.+...+....+...+. |+.||+||||||+....+|.++.+.++..+.+|+|+.|+..+++|.+|+||||+|||+||||
T Consensus 273 ~k~V~~~~~~~s~~~es~~~~qv~Wre~~y~~~~n~p~~~~m~~n~~~~~ipw~~n~~~~~aw~~G~tG~P~ida~m~~l 352 (531)
T KOG0133|consen 273 LKQVKWKAKKNSLPPESLFLGQVAWREFFYTAAFNTPYFDDMPGNKILLQIPWDKNPPKLAAWLEGLTGYPWLDAGMRQL 352 (531)
T ss_pred HHHHHHhhhcccCCccccccceeeeechhhHhhcCCccccccccccccccCCcccChhhhHHHHcCCCCCCchhHHHHHH
Confidence 33333332223334454 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCc
Q 014577 236 RKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNG 314 (422)
Q Consensus 236 ~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G 314 (422)
++||||||+.|+++|||+|+|+|+|+|++|.++|+++|+|+|+.+|.|||||++ ++.+..+|+|||||+.+++++||+|
T Consensus 353 ~~~gw~h~~~R~~vasf~tr~~L~i~w~eg~~~F~~~llD~D~~~~agnW~~~S~~s~f~~~~~~~ysp~~~~kk~dP~g 432 (531)
T KOG0133|consen 353 LASGWEHHRSRTIVASFLTRGDLLISWREGLDVFMEYLLDADSSKNAGNWMWLSSTSHFFDQFDRVYSPVALGKKLDPDG 432 (531)
T ss_pred HHHHHHhcccchhhHhHhhccceeeeHHHHHHHHHHHhcchhhhcCCCccceeccccccccccccccCHHHHhCcCCcch
Confidence 999999999999999999999999999999999999999999999999999999 8889999999999999999999999
Q ss_pred chhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhc
Q 014577 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKL 382 (422)
Q Consensus 315 ~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~~~~~ 382 (422)
.|||+|+|||++.|..+||+||.+|..+|++++|.+|.+||+|||+|+.++++++++|+.+++.....
T Consensus 433 ~yir~~lp~l~~~p~~~i~~pW~~p~~~~~~~~~~lg~~Yp~~iv~~~~a~k~~~e~~~~~~~~~~~~ 500 (531)
T KOG0133|consen 433 LYIRQWLPELRSGPMHFIYEPWAAPEGVQTAAGELLGVDYPKPIVKLASAAKRNMEAMGCMWSIGAVH 500 (531)
T ss_pred hhHHHHhHHHhcCCcceeccCCCCcHHHhhhhhhhhhcccchhhhhhHHhhHhHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999877654
No 8
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.2e-67 Score=544.67 Aligned_cols=291 Identities=17% Similarity=0.195 Sum_probs=221.7
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC-
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPT- 80 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p~- 80 (422)
+|++.|.+ +|.++.|++++|++|+.+.++ .+|++||+|.+..........+.|... ..+....... .....+.
T Consensus 133 ~v~~~l~~-~i~~~~~~~~~l~p~~~~~~~---~~y~~ft~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 206 (454)
T TIGR00591 133 AVGKLLPK-DVPFQQVDAHNVVPCWAASKK---LEYAARTIRGKIRKLLPEYLTEFPRVL-KHPSPLDLEA-GPVDWDAV 206 (454)
T ss_pred HHHHHhcC-CCcEEEECCceEeeCcccCCc---eeeeeecHHHHHHHhChhhccccCCCc-cCCccccccc-CcCCHHHH
Confidence 57777855 999999999999999999875 689999998876322110000001100 0000000000 0000010
Q ss_pred hhhcCCCCCCCCCCCCC-CccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHH
Q 014577 81 VEELGYKGYGQEELSPF-RGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159 (422)
Q Consensus 81 l~~lg~~~~~~~~~~~~-~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~ 159 (422)
++.+++.. . .....| +|||++|+++|+.|+++. +.+|+..||.|+ .++||+|||||+|||||||+|++++.+
T Consensus 207 ~~~~~~~~-~-~~~~~~~~gGe~aA~~~L~~F~~~~--l~~Y~~~Rn~p~---~~~tS~LSPyL~~G~IS~R~i~~~~~~ 279 (454)
T TIGR00591 207 RDSLAVER-S-VEEVVWAKPGTTAGLIMLESFIEKR--LCFFRTRRNDPN---NDALSMLSPWLHFGQLSAQRAARAVER 279 (454)
T ss_pred HHhccCcC-C-cCCcCCCCCcHHHHHHHHHHHHHHH--HHHHHHhcCCcc---cccccccchHHhcCcccHHHHHHHHHH
Confidence 11121111 1 112237 999999999999999764 999999999998 479999999999999999999999854
Q ss_pred HHHhccCCCCChHHHHHHHHHH-HHHHHHHHcCCCccccccccccCCCCCC--------CCH----HHHHHHHcCCCCcH
Q 014577 160 VYQNVKKHTSPPVSLVGQLLWR-DFFYTVAFGTPNFDRMKGNRICKQIPWS--------NDD----ELLAAWREARTGYP 226 (422)
Q Consensus 160 ~~~~~~~~~~~~~~f~~eL~WR-ef~~~~~~~~p~~~~~~~~~~~~~~~w~--------~~~----~~~~aW~~G~TG~P 226 (422)
... ....+.+.|++||+|| |||+++++++|++.... ....|. .+. ..|++|++|+||||
T Consensus 280 ~~~---~~~~~~~~fl~EL~WR~ef~~~~~~~~p~~~~~~-----~~~~w~~~~l~~~~~d~r~~~~~~~~W~~G~Tg~p 351 (454)
T TIGR00591 280 ARG---NAGESVEFFEEELVVRRELADNFCFYNPYYDSLC-----GAYWWARTTLDDHAKDKREHLYSLEQLEKSTTHDY 351 (454)
T ss_pred hcc---CCchHHHHHHHHHHHHHHHHhHhhhcCCCccccc-----cchHHHHHHHHHHhcCCccccCCHHHHHhcCcCcH
Confidence 331 1123457899999999 89999999999877522 122253 333 36999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHH--------hccccccCCcccchhhhhcccCCCCc-
Q 014577 227 WIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR--------LLIDSDWAINNGNWLWLSCSSFFYQY- 297 (422)
Q Consensus 227 ~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~--------~LiD~D~a~N~~~Wqw~a~g~~~~~~- 297 (422)
|||||||||++|||||||+||+|| | +| |||+.|++||++ +|||||+|+|+|||||++||+|++||
T Consensus 352 ivdA~MrqL~~TG~MHNr~RMi~a----K-~l-i~W~~g~~~f~~~~~~ln~~~lvDgd~a~n~~~wqW~~~G~d~~p~~ 425 (454)
T TIGR00591 352 LWNAAQEQLVTEGKMHGFLRMYWA----K-KI-LEWTHSPEEALSIAIYLNDKYILDGRDPNGYVGCMWSICGIHDQGWA 425 (454)
T ss_pred hHhHHHHHHHHhCccccceeeeee----e-eh-hhcCCCHHHHHHHHHHhhhhhhccCCCCCccceeeeEeccccCCCCC
Confidence 999999999999999999999999 8 88 999999999999 89999999999999999769999999
Q ss_pred ----c---cccCcccccccCCCCcchhhhh
Q 014577 298 ----N---RIYSPVSFGKKYDPNGNYIRHF 320 (422)
Q Consensus 298 ----~---RifnP~~q~~k~Dp~G~yIr~w 320 (422)
| |+|||++|++||||+| |||+|
T Consensus 426 ~~~~fg~iR~~np~~q~~kfd~~~-yi~~~ 454 (454)
T TIGR00591 426 ERIVFGKIRYMNYAGCRRKFNVAY-FERKY 454 (454)
T ss_pred CCccceeeeecChhhhhccCCHHH-HHhhC
Confidence 9 9999999999999999 99998
No 9
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=99.90 E-value=8e-23 Score=202.97 Aligned_cols=298 Identities=21% Similarity=0.250 Sum_probs=208.4
Q ss_pred HHHHHHCCCeEEeecC-CeeecCcccccccCCCCCccchhHHHHhcCCC----CCCCCC------CCCCCCCCCCCCCCC
Q 014577 4 KDYASTAGIEVFSPVS-HTLFNPADIIQKNGGKPPLTYQSFLKLAGQPL----WASSPL------PVSLSSLPPVGDVGY 72 (422)
Q Consensus 4 ~~~l~~~gi~~~~~~~-~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~----~~~~p~------p~~~~~~~~~~~~~~ 72 (422)
+++.-+.||++....+ |.|..+.++..-.++..+....+|++..++.. ....|. -.... .+..|++..
T Consensus 110 ~~L~~~~g~~i~~~~~~~Fl~s~a~f~~w~~~~k~~lme~FYr~mRkr~g~LM~~dqP~GGrWnFDaeNR-~~~~pdL~~ 188 (505)
T COG3046 110 KSLSMALGIEITEVENPHFLCSRAEFDAWAGDRKPLLMESFYRRMRKRTGILMEDDQPEGGRWNFDAENR-KKLPPDLLP 188 (505)
T ss_pred HhhhhhcCceeEEecCcceecCHHHhhhhhccCcchhhHHHHHHHHHhhceeccCCCCCCCcCCcCcccc-cCCCCcCCC
Confidence 3444478999998866 58999999988777677777888987643210 000010 00000 000011100
Q ss_pred ccCCCCC------C----hhhcCCCC-CCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCC-CCCCCCCCc
Q 014577 73 FEISEVP------T----VEELGYKG-YGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAY-LKPATTVLS 140 (422)
Q Consensus 73 ~~~~~~p------~----l~~lg~~~-~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~-~~~~tS~LS 140 (422)
.....+| + ++.+ |.+ ........|+...++|+..|++||+.. |.+|+...|.+... ..-.+|.||
T Consensus 189 P~pl~fppd~~vq~v~e~Ve~~-f~~~~G~~e~F~wpvtr~~A~~~L~~Fi~~~--L~nFG~yQDam~~d~~~L~HSllS 265 (505)
T COG3046 189 PKPLKFPPDEIVQEVKERVERL-FPDNFGQVEGFGWPVTRTQALRALKHFIADR--LPNFGSYQDAMSADDPHLWHSLLS 265 (505)
T ss_pred CCCCCCCCcchhHHHHHHHHhh-CCCCCCccccCCCCCCHHHHHHHHHHHHHHh--hhcCCcHHHHHhcCCchhHHHHHH
Confidence 0011111 1 1111 111 122234579999999999999999875 99999988877642 223689999
Q ss_pred hhhccCcCcHHHHHHHHHHHHHhccCCCCChHHHHHH-HHHHHHHHHHHHc-CCCccccccccccCCCCCCCCHHHHHHH
Q 014577 141 PYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ-LLWRDFFYTVAFG-TPNFDRMKGNRICKQIPWSNDDELLAAW 218 (422)
Q Consensus 141 PyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~f~~e-L~WRef~~~~~~~-~p~~~~~~~~~~~~~~~w~~~~~~~~aW 218 (422)
|||+.|.|+|.+|+.++.+++......-.++|.|++| |.||||.+.+++. .|++.+.+.... +..+....
T Consensus 266 ~alNigLL~PleVi~Aa~~Ay~~g~ipLN~VEGFvRQiiGWREfmRgiY~~~~P~y~trN~f~~--------d~~Lp~~y 337 (505)
T COG3046 266 FALNIGLLTPLEVIRAALKAYREGDIPLNSVEGFVRQIIGWREFMRGIYWLKMPDYATRNFFNA--------DRKLPPFY 337 (505)
T ss_pred HHhhccCCCHHHHHHHHHHhhccCCCchHHHHHHHHHHhhHHHHHHHhhhhcCCchhhhhhhcc--------CCCCCCcc
Confidence 9999999999999999998887644445678999999 5799999999875 477765543222 22223445
Q ss_pred HcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccc-cccC--CcccchhhhhcccCCC
Q 014577 219 REARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLID-SDWA--INNGNWLWLSCSSFFY 295 (422)
Q Consensus 219 ~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD-~D~a--~N~~~Wqw~a~g~~~~ 295 (422)
.+|+|++-|++-++++...+||.||+-|.||-+.|.- .+++|...--+||+..+|| |||. -|+-|+.-.|.|+
T Consensus 338 w~g~T~M~cl~~av~~v~d~gYAHHIqRLMV~gNfAL-l~G~dPd~v~~Wf~~~fiDAYdWV~~PNv~GM~qFADGG--- 413 (505)
T COG3046 338 WTGQTKMACLAIAVGRVLDHGYAHHIQRLMVTGNFAL-LLGVDPDAVDRWFMEVFIDAYDWVELPNVRGMSQFADGG--- 413 (505)
T ss_pred ccCCcCchHHHHHHHHHhhhhHHHHHHHHHHHhhHHH-HhCCCHHHHHHHHHHHHhhHhhheecccccchhhcccCc---
Confidence 6789999999999999999999999999999999999 9999999999999999999 5885 4666666566332
Q ss_pred CcccccCcccccccCCCCcchhhhhccccc
Q 014577 296 QYNRIYSPVSFGKKYDPNGNYIRHFLPVLK 325 (422)
Q Consensus 296 ~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~ 325 (422)
+..+|.|-..|.||.|.---.+
T Consensus 414 --------~iatKPYasS~nYInkMSDyC~ 435 (505)
T COG3046 414 --------LIATKPYASSGNYINKMSDYCS 435 (505)
T ss_pred --------eeecCccccchhHHHHHhHhhh
Confidence 2346778888889888654433
No 10
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=98.31 E-value=2.4e-07 Score=83.90 Aligned_cols=50 Identities=32% Similarity=0.464 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW 52 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~ 52 (422)
+|++.|.+.||.++.++|++|++|++|.++.| ++|+|||||+|+|.+...
T Consensus 108 ~v~~~l~~~~i~~~~~~~~~L~~~~~i~~~~~-~~~~vFtpf~k~~~~~~~ 157 (165)
T PF00875_consen 108 RVRKALKKHGIKVHTFDDHTLVPPDDIPKKDG-EPYKVFTPFRKKWEKQLL 157 (165)
T ss_dssp HHHHHHHHTTSEEEEE--SSSS-HHHCHSTTS-SSHSSHHHHHHHHHCHCS
T ss_pred HHHHHHHhcceEEEEECCcEEEeccccccCCC-CCcccHHHHHHHHHhcCC
Confidence 68889999999999999999999999998877 999999999999987653
No 11
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.78 E-value=2.3 Score=42.55 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=47.0
Q ss_pred HhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchhhhhcccccCCCCCcccCCCCCChhHHhhhcc--
Q 014577 271 RLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKC-- 348 (422)
Q Consensus 271 ~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~-- 348 (422)
+.|-|+.-|.. |++++ +|.|||... ||+|..=..--|| .+ ..|...|.+.|-
T Consensus 151 ~iL~d~~~a~~---~~~v~--------LRYFN~aGA----~~~G~iGe~~~~~-th----------Lip~~~q~A~G~r~ 204 (329)
T COG1087 151 EILRDAAKANP---FKVVI--------LRYFNVAGA----CPDGTLGQRYPGA-TL----------LIPVAAEAALGKRD 204 (329)
T ss_pred HHHHHHHHhCC---CcEEE--------EEecccccC----CCCCccCCCCCCc-ch----------HHHHHHHHHhcCCc
Confidence 34445544433 66544 799999985 5665332222222 11 123333444433
Q ss_pred ---ccCCCCCCC----------CCChHHHHHHHHHHHHH
Q 014577 349 ---IIGRDYPAP----------VVSHDSASKECKRKLGE 374 (422)
Q Consensus 349 ---~~g~~YP~P----------iVd~~~~r~~a~~~~~~ 374 (422)
+.|.|||.| ++|+..+.-.|++.+++
T Consensus 205 ~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~ 243 (329)
T COG1087 205 KLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKE 243 (329)
T ss_pred eeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHh
Confidence 568999987 37999999999987775
No 12
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=39.38 E-value=15 Score=39.68 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=32.6
Q ss_pred cccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchhhhhccc
Q 014577 274 IDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPV 323 (422)
Q Consensus 274 iD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPE 323 (422)
.|.|.++|+||.--+-+--....| -.|+.+||++|....=|.+|
T Consensus 476 ~ea~~a~NYGgIGaVIgHEI~HgF------DdqGakfD~~GnL~dWWT~e 519 (654)
T COG3590 476 PEADSAANYGGIGAVIGHEIGHGF------DDQGAKFDGDGNLNDWWTDE 519 (654)
T ss_pred CCcchhhcccCccceehhhhcccc------cCCccccCCCCcHHhhcCHH
Confidence 788999999999765531111111 25899999999999999887
No 13
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=33.22 E-value=14 Score=30.63 Aligned_cols=13 Identities=54% Similarity=1.244 Sum_probs=9.9
Q ss_pred ccCCCCcchhhhh
Q 014577 308 KKYDPNGNYIRHF 320 (422)
Q Consensus 308 ~k~Dp~G~yIr~w 320 (422)
.+|||+|.|.++|
T Consensus 83 ~KyDp~~~y~~ky 95 (95)
T PF03392_consen 83 KKYDPEGKYRKKY 95 (95)
T ss_dssp HHHTTT-TTHHHH
T ss_pred HHHCCCcchhhcC
Confidence 5899999998875
No 14
>PF04104 DNA_primase_lrg: Eukaryotic and archaeal DNA primase, large subunit; InterPro: IPR007238 DNA primase is the polymerase that synthesises small RNA primers for the Okazaki fragments made during discontinuous DNA replication. DNA primase is a heterodimer of two subunits, the small subunit Pri1 (48 kDa in yeast), and the large subunit Pri2 (58 kDa in the yeast Saccharomyces cerevisiae) []. Both subunits participate in the formation of the active site, but the ATP binding site is located on the small subunit []. Primase function has also been demonstrated for human and mouse primase subunits [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 1ZT2_B 3Q36_A 3L9Q_B 2DLA_B 3LGB_B.
Probab=29.69 E-value=59 Score=31.71 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhc
Q 014577 226 PWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLL 273 (422)
Q Consensus 226 P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~L 273 (422)
||+=+.+..|++.+-+.|..|+.+++||.. ++++-.+-..+|...+
T Consensus 110 pCMr~l~~~L~~~~hL~h~~R~ql~lFLk~--iGl~~ee~l~f~~~~f 155 (260)
T PF04104_consen 110 PCMRNLHERLRKGHHLKHSGRFQLGLFLKG--IGLSLEEALEFWRSEF 155 (260)
T ss_dssp HHHHHHHHHHHHHS---HHHHHHHHHHHHH--TTEECCCHHHCCHHHC
T ss_pred hHHHHHHHHHhhCCCCCchhHhhHHHHHHh--cCCCHHHHHHHHHHHh
Confidence 678888888899999999999999999986 8888777666666654
No 15
>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]
Probab=22.61 E-value=1e+02 Score=26.43 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=22.0
Q ss_pred CCC--CChHHHHHHHHHHHHHHHHHhhh
Q 014577 356 APV--VSHDSASKECKRKLGEAYALNQK 381 (422)
Q Consensus 356 ~Pi--Vd~~~~r~~a~~~~~~~~~~~~~ 381 (422)
.|| +|..|||++.++.|++.|.++..
T Consensus 12 ~Pi~S~n~~EARrrvl~~yra~~R~iP~ 39 (124)
T KOG3426|consen 12 VPINSANLTEARRRVLDLYRAWYRSIPT 39 (124)
T ss_pred CCCccCcHHHHHHHHHHHHHHHHHhcCh
Confidence 466 58999999999999999987753
No 16
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=22.46 E-value=66 Score=25.38 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=21.6
Q ss_pred HHhcccchHHHHHHHHHhhhccCccC
Q 014577 236 RKWGWMHHLARHCVACFLTRGDMFVH 261 (422)
Q Consensus 236 ~~tGwmHnr~Rm~vAsFLtkg~L~id 261 (422)
.+|||..|-+|-.++..|-| .|+++
T Consensus 32 ~atGWq~HTvRgalsg~~kK-klGl~ 56 (72)
T PF11994_consen 32 EATGWQPHTVRGALSGLLKK-KLGLT 56 (72)
T ss_pred HhhCCchhhHHHHHHHHHHH-hcCcE
Confidence 46999999999999999888 77654
No 17
>PRK02249 DNA primase large subunit; Validated
Probab=20.71 E-value=1.7e+02 Score=29.99 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHH
Q 014577 226 PWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDR 271 (422)
Q Consensus 226 P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~ 271 (422)
||+=+.+..|.+.+-+.|..|+.+++||.. .+++..+-..+|..
T Consensus 224 pCm~~l~~~l~~g~~L~h~~R~~l~~FL~~--iG~~~deil~~~~~ 267 (343)
T PRK02249 224 PCMKALLSALQAGENLPHTARFAITSFLLN--IGMSVDEIVELFRN 267 (343)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCCHHHHHHHHhh
Confidence 677777777799999999999999999987 78888888887754
Done!