Query 014577
Match_columns 422
No_of_seqs 237 out of 1626
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 100.0 1E-106 5E-111 854.4 35.2 412 2-413 123-535 (537)
2 3tvs_A Cryptochrome-1; circadi 100.0 2E-100 6E-105 809.1 25.0 381 2-383 119-519 (538)
3 2wq7_A RE11660P; lyase-DNA com 100.0 1E-99 3E-104 805.5 29.4 374 2-379 144-524 (543)
4 1u3d_A Cryptochrome 1 apoprote 100.0 1.6E-98 5E-103 791.3 26.7 363 2-379 121-495 (509)
5 1np7_A DNA photolyase; protein 100.0 1.7E-97 6E-102 779.9 27.5 364 2-373 120-484 (489)
6 1owl_A Photolyase, deoxyribodi 100.0 6.9E-95 2.4E-99 759.1 25.8 354 2-377 112-473 (484)
7 1dnp_A DNA photolyase; DNA rep 100.0 6.8E-95 2.3E-99 756.6 23.5 348 2-375 115-467 (471)
8 2e0i_A 432AA long hypothetical 100.0 4.4E-92 1.5E-96 729.1 21.7 319 2-376 109-429 (440)
9 2j4d_A Cryptochrome 3, cryptoc 100.0 6.9E-92 2.4E-96 742.8 21.3 357 2-373 155-515 (525)
10 2j07_A Deoxyribodipyrimidine p 100.0 1.7E-87 5.7E-92 691.8 24.0 310 2-375 107-417 (420)
11 3umv_A Deoxyribodipyrimidine p 100.0 4.7E-68 1.6E-72 557.3 5.0 308 2-333 149-495 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 1.7E-67 5.8E-72 551.7 7.1 300 2-322 144-481 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 2.8E-60 9.6E-65 494.7 10.1 346 3-383 123-498 (522)
14 2gvs_A Chemosensory protein CS 43.5 5.8 0.0002 32.6 0.4 22 307-328 87-108 (109)
15 3lgb_A DNA primase large subun 26.0 1E+02 0.0036 27.6 5.7 47 226-274 20-66 (194)
16 1k19_A Chemosensory protein CS 22.9 19 0.00063 29.7 0.1 20 307-326 85-104 (112)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-106 Score=854.36 Aligned_cols=412 Identities=78% Similarity=1.416 Sum_probs=347.3
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCh
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTV 81 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p~l 81 (422)
+|+++|++.||++++|+|++|++|++|.++++|++|+|||||+++|.+...+..|.......+++.+.........+|++
T Consensus 123 ~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l 202 (537)
T 3fy4_A 123 KVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSL 202 (537)
T ss_dssp HHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSSHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCT
T ss_pred HHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCCccCHHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcH
Confidence 68899999999999999999999999998777789999999999998764211121111011222111111123457888
Q ss_pred hhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHH
Q 014577 82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY 161 (422)
Q Consensus 82 ~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~ 161 (422)
+++|+..........|+|||++|+++|+.|+.++.++.+|+.+||.|+.+..++||+|||||+|||||||+|++++.+..
T Consensus 203 ~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~ 282 (537)
T 3fy4_A 203 EELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIY 282 (537)
T ss_dssp TTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HhcCCCcccccccCCCCccHHHHHHHHHHHHhCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHH
Confidence 88877422111234699999999999999998644699999999998743357999999999999999999999998765
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhccc
Q 014577 162 QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241 (422)
Q Consensus 162 ~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwm 241 (422)
........+.++|++||+|||||+++++++|++...++++.+..++|++|++.|++|++|+|||||||||||||++||||
T Consensus 283 ~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~m 362 (537)
T 3fy4_A 283 KDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWM 362 (537)
T ss_dssp HTTSCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCC
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHHHHCcchhcccCChhhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHHHHhCcc
Confidence 43322345678899999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchhhhhc
Q 014577 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFL 321 (422)
Q Consensus 242 Hnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wv 321 (422)
|||+|||||||||||+|+||||.|++||+++|||||+|+|+|||||+||++++.+|||||||++|++||||+|+|||+||
T Consensus 363 Hnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~D~a~n~g~Wqw~ag~g~d~~~fRifNP~~Q~~kfDp~G~yIr~wv 442 (537)
T 3fy4_A 363 HHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFL 442 (537)
T ss_dssp CHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCCTTCCCCTTTTGGGTCTTCHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHccccccccChHhhhhhcccCCCcccccccCHHHHHHHhCCCchHHHHhC
Confidence 99999999999995599999999999999999999999999999999965555559999999999999999999999999
Q ss_pred ccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCcchhhhhhhhhhhccc
Q 014577 322 PVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQKLNGQVSEDGLKNLRRKFEGE 401 (422)
Q Consensus 322 PEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (422)
|||++||+++||+||+++..+|+++||.+|.|||.|||||+++|++|+++|+++|+.++..++++.+.+.+.+++++.+.
T Consensus 443 PEL~~lp~~~Ih~Pw~~~~~~~~~~g~~~g~~YP~PIVdh~~ar~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (537)
T 3fy4_A 443 PVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKKMDGKVDEENLRDLRRKLQKD 522 (537)
T ss_dssp GGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HhhcCCCHHhhCCcccCCHHHHHhcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred cccchh-hhhhhh
Q 014577 402 ENQESG-RRQKQK 413 (422)
Q Consensus 402 ~~~~~~-~~~~~~ 413 (422)
...++. .++++|
T Consensus 523 ~~~~~~~~~~~~~ 535 (537)
T 3fy4_A 523 EHEESKIRNQRPK 535 (537)
T ss_dssp TTC----------
T ss_pred CCccccccccccc
Confidence 666655 555554
No 2
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=1.7e-100 Score=809.10 Aligned_cols=381 Identities=34% Similarity=0.667 Sum_probs=319.7
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCC-CCC--CCCCCCC-c--cC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLS-SLP--PVGDVGY-F--EI 75 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~-~~~--~~~~~~~-~--~~ 75 (422)
+|+++|++.||++++|+|++|++|++|.++++|.+|.|||+|++.+.....+..|.|.+.. .+. ..+.... . ..
T Consensus 119 ~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~ 198 (538)
T 3tvs_A 119 SIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLF 198 (538)
T ss_dssp HHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHHHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCB
T ss_pred HHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcchHHHHHHHHhhCCCCCCCCCccccccccccCCcccccccccc
Confidence 6889999999999999999999999999888778999999999998776433223322210 010 0110000 0 01
Q ss_pred CCCCChhhcCCCCCCCC--CCCCCCccHHHHHHHHHHHhc--CchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHH
Q 014577 76 SEVPTVEELGYKGYGQE--ELSPFRGGESEALKKLRESIS--DKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSR 151 (422)
Q Consensus 76 ~~~p~l~~lg~~~~~~~--~~~~~~gGe~~A~~~L~~Fl~--~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R 151 (422)
..+|+++++|+...... ....|+|||++|+++|++|+. .+.++.+|+.+|+.+... .++||+|||||+|||||||
T Consensus 199 ~~~p~l~~l~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~~~l~~y~~~r~~~~~~-~~~tS~LSpyL~~G~lS~r 277 (538)
T 3tvs_A 199 EQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNI-HDSPKSMSAHLRFGCLSVR 277 (538)
T ss_dssp SSCCCTTTTSCCCCCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCCTTTTSCCS-SCCSCCCHHHHHTTSSCHH
T ss_pred cCCCCHHHcCCCcccccccccCCCCCCHHHHHHHHHHHHHhhhhhhHhhhcccccCcccc-cCCCcCCCHHHhCCCcCHH
Confidence 34678888887432110 134689999999999999994 334699999999987631 3689999999999999999
Q ss_pred HHHHHHHHHHHhccC-------CCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCC-CHHHHHHHHcCCC
Q 014577 152 YFYQCLTDVYQNVKK-------HTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSN-DDELLAAWREART 223 (422)
Q Consensus 152 ~v~~~~~~~~~~~~~-------~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~-~~~~~~aW~~G~T 223 (422)
+|++++.+....... ...+.++|++||+|||||+++++++|++...++++.+..++|++ |++.|++|++|+|
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~aW~~G~T 357 (538)
T 3tvs_A 278 RFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQT 357 (538)
T ss_dssp HHHHHHHHHTCSSSCCCCCSSSCCTTTTTTHHHHHHHHHHHHHHHHSSCTTSSSSCSSCCCCCCCCCCSSHHHHHHTTCS
T ss_pred HHHHHHHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHHhCcchhhccCChhhhcCCccccCHHHHHHHHhCCC
Confidence 999999876532111 11345789999999999999999999998888888889999988 8889999999999
Q ss_pred CcHHHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhhc-cc-CCCCccccc
Q 014577 224 GYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC-SS-FFYQYNRIY 301 (422)
Q Consensus 224 G~P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~-g~-~~~~~~Rif 301 (422)
||||||||||||++|||||||+|||||||||||+|+||||.|++||+++|||||+|+|+|||||+|| |+ |+.||||||
T Consensus 358 G~P~VDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRif 437 (538)
T 3tvs_A 358 GFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVT 437 (538)
T ss_dssp SCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHSCCCSSCCCTHHHHC
T ss_pred CCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhCCCchHHHHHHHHHcccCchhhchhhhhhhhcCCCcCCCCceeee
Confidence 9999999999999999999999999999999878999999999999999999999999999999995 55 368999999
Q ss_pred CcccccccCCCCcchhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHhhh
Q 014577 302 SPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALNQK 381 (422)
Q Consensus 302 nP~~q~~k~Dp~G~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~~~~ 381 (422)
||++|++||||+|+|||+|||||++||+++||+||+++..+|+++||.+|.+||.|||||+++|++|+++|+.+++.+..
T Consensus 438 NP~~Q~~kfDp~G~YIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVdh~~ar~~al~~~~~~~~~~~~ 517 (538)
T 3tvs_A 438 CPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLIT 517 (538)
T ss_dssp STTTHHHHSCTTCTTGGGTCGGGSSSCCSSCCSHHHHHTTHHHHSSCCSSSSSCCCSSCSHHHHHHHHHHHHTTTTTTCS
T ss_pred CHHHHHHHhCCCcchHHHhChhhcCCCHHhhcCcccCCHHHHHHcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877766554
Q ss_pred cc
Q 014577 382 LN 383 (422)
Q Consensus 382 ~~ 383 (422)
..
T Consensus 518 ~~ 519 (538)
T 3tvs_A 518 PP 519 (538)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 3
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=1e-99 Score=805.48 Aligned_cols=374 Identities=51% Similarity=0.955 Sum_probs=318.1
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCC--CCCCC-c----c
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPV--GDVGY-F----E 74 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~--~~~~~-~----~ 74 (422)
+|+++|++.||+++++++++|++|++|....+|++|+|||+|++.+.....+. |.+.+ ..++.. +.... . .
T Consensus 144 ~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~~~~~~~~~~-p~~~p-~~~~~~~~p~~~~~~~~~~~ 221 (543)
T 2wq7_A 144 AVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK-VLGVP-EKLKNMPTPPKDEVEQKDSA 221 (543)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHHHHHHHHTTSCCCC-CCCCC-CCCSSCCCCCCCHHHHHCTT
T ss_pred HHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHHHHHHHHHHccCCC-CCCcc-hhcccccccccccccccccc
Confidence 57889999999999999999999999766555599999999999987643221 22222 111110 10000 0 0
Q ss_pred CCCCCChhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHH
Q 014577 75 ISEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFY 154 (422)
Q Consensus 75 ~~~~p~l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~ 154 (422)
...+|+++++++... ......|+|||++|+++|+.||+++.++.+|+..||.|.. ..++||+|||||+|||||||+|+
T Consensus 222 ~~~~p~l~~l~~~~~-~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~Rd~p~~-~~~~tS~LSPyL~~G~LSpR~v~ 299 (543)
T 2wq7_A 222 AYDCPTMKQLVKRPE-ELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNS-LEPSTTVLSPYLKFGCLSARLFN 299 (543)
T ss_dssp TTSCCCHHHHCSCGG-GCCCCCSCCSHHHHHHHHHHHHTCHHHHHHCCGGGSCSSC-SSCSSCCCHHHHHHTSSCHHHHH
T ss_pred ccCCCCHHHcCCCcc-ccccCCCCCCHHHHHHHHHHHHhCChhhhhhcccccCccc-cccCCCCcCHhHhCCCCCHHHHH
Confidence 035677888876421 1112358999999999999999864459999999999873 23799999999999999999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHH
Q 014577 155 QCLTDVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234 (422)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRq 234 (422)
+++.+..........+.++|++||+|||||+++++++|++...++++.+..++|+.+++.|++|++|+||||||||||||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~f~~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrq 379 (543)
T 2wq7_A 300 QKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQ 379 (543)
T ss_dssp HHHHHHHHHCSSCCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHhCCccccccCChHhhcCCCccCHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99987554322234567889999999999999999999998888888899999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCc
Q 014577 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNG 314 (422)
Q Consensus 235 L~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G 314 (422)
|++|||||||+|||||||||||+|+||||+|++||+++|||||+|+|+|||||+||++.+.+|||||||++|++||||+|
T Consensus 380 L~~tG~mHnr~Rm~vASFL~kg~L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~aG~g~D~~~~RifNP~~q~~kfDp~g 459 (543)
T 2wq7_A 380 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQG 459 (543)
T ss_dssp HHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCCTTCCCCTTTGGGGTCTTC
T ss_pred HHHhCCccHHHHHHHHHHHHHHhhCCCCchHHHHHHHHhccCCcccCHHHHHHHhcCCCcCccccccCHHHHhhhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999996555555999999999999999999
Q ss_pred chhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 014577 315 NYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALN 379 (422)
Q Consensus 315 ~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~~ 379 (422)
+|||||||||+++|+++||+||+++..+|+++||.+|.+||.|||||+++|++|+++|+.+.+..
T Consensus 460 ~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~al~~~~~~~~~~ 524 (543)
T 2wq7_A 460 HYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKVN 524 (543)
T ss_dssp HHHHHHSGGGTTSCHHHHTSGGGSCHHHHHHTTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhCHHhhccccccccCcccCChHHHHhhcccccCCCCCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999888877654
No 4
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=1.6e-98 Score=791.27 Aligned_cols=363 Identities=26% Similarity=0.468 Sum_probs=306.2
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCC-CCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW-ASSPLPVSLSSLPPVGDVGYFEISEVPT 80 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~-~~~p~p~~~~~~~~~~~~~~~~~~~~p~ 80 (422)
+|++.|++.||+++++++++|++|++|.+.+| ++|+|||||++++.+... +..+.|.+. .++. +. ...++
T Consensus 121 ~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g-~~~~vftpf~r~~~~~~~~~~~~~~~p~-~~~~-~~------~~~~~ 191 (509)
T 1u3d_A 121 RAKDVLTAQGIAVRSFNADLLYEPWEVTDELG-RPFSMFAAFWERCLSMPYDPESPLLPPK-KIIS-GD------VSKCV 191 (509)
T ss_dssp HHHHHHHTTTCEEEEECCSCSSCGGGCCCSSS-CCCSSHHHHHHHHHTCSSCCCCCCCCCS-CCCB-TT------GGGSS
T ss_pred HHHHHHHHcCcEEEEECCCEEEcCCcccCCCC-CCchhHHHHHHHHHhccCCCCCCCCCcc-ccCc-cc------cCCCC
Confidence 57889999999999999999999999999866 999999999999866421 111121111 1110 00 01123
Q ss_pred hhhcCCCCC-C--CCCC--CCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHH
Q 014577 81 VEELGYKGY-G--QEEL--SPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQ 155 (422)
Q Consensus 81 l~~lg~~~~-~--~~~~--~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~ 155 (422)
++++++... . .... ..|+|||++|+++|++|++++ +.+|+..||.|+ .++||+|||||+|||||||+|++
T Consensus 192 ~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~Rd~p~---~~~tS~LSPyL~~G~LSpR~v~~ 266 (509)
T 1u3d_A 192 ADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGP--LLEYSKNRRKAD---SATTSFLSPHLHFGEVSVRKVFH 266 (509)
T ss_dssp CCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTG--GGGTTTTTTCSS---STTSCCCHHHHHTTSSCHHHHHH
T ss_pred hhHhCCCcccccchhhhccccCCCcHHHHHHHHHHHHHHH--HHhhhhccCCCC---CCCCCCCChhhccCCCCHHHHHH
Confidence 444544210 0 0001 138999999999999999875 999999999987 46899999999999999999999
Q ss_pred HHHHHH-----HhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHH
Q 014577 156 CLTDVY-----QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDA 230 (422)
Q Consensus 156 ~~~~~~-----~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDA 230 (422)
++.+.. ........+.++|++||+|||||+++++++|++...+..+.++.++|..|++.|++|++|+||||||||
T Consensus 267 ~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~~~~~aW~~G~TG~P~VDA 346 (509)
T 1u3d_A 267 LVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDA 346 (509)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcCChHHHHHHHcCCCCCHhHHH
Confidence 987643 110011224678999999999999999999987766666667889999999999999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCccccccc
Q 014577 231 IMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKK 309 (422)
Q Consensus 231 aMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k 309 (422)
|||||++|||||||+|||||||||| +|+||||.|++||+++|||||+|+|+|||||+| +|+|+.||||||||++|++|
T Consensus 347 aMrqL~~tG~mHnr~Rm~vasfl~k-~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d~~py~RifNP~~Q~~k 425 (509)
T 1u3d_A 347 GMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYK 425 (509)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHH-ccCCCchHHHHHHHHHhccCCcccchHHHHHHhcCCCCCCccccccCHHHHHHh
Confidence 9999999999999999999999999 999999999999999999999999999999999 56678999999999999999
Q ss_pred CCCCcchhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 014577 310 YDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYALN 379 (422)
Q Consensus 310 ~Dp~G~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~~ 379 (422)
|||+|+|||||||||+++|+++||+||+++..+|+.+||.+|.+||.|||||+++|++|+++|+.+++..
T Consensus 426 fDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~~ 495 (509)
T 1u3d_A 426 FDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLE 495 (509)
T ss_dssp HCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchhHHHhCHHhhccccccccCcccCChHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999999999999999998888777644
No 5
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=1.7e-97 Score=779.91 Aligned_cols=364 Identities=27% Similarity=0.452 Sum_probs=304.8
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhc-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAG-QPLWASSPLPVSLSSLPPVGDVGYFEISEVPT 80 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~-~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p~ 80 (422)
+|++.|++.||+++++++++|++|++|.+..| ++|+|||+|++.+. +......|.|.+. .+++.+. ......+|+
T Consensus 120 ~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g-~~~~vft~F~~~~~~~~~~~~~p~~~p~-~~~~~~~--~~~~~~~~~ 195 (489)
T 1np7_A 120 NLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQ-DLPDLFTKFRKDIEKKKISIRPCFFAPS-QLLPSPN--IKLELTAPP 195 (489)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSCGGGSSSCGG-GCCSSHHHHHHHHHTTTCCCCCCCCCCS-CCCCCCC--CCCCCCCCC
T ss_pred HHHHHHHhcCCeEEEecCCeeeCccccccCCC-CCCchHHHHHHHHHHhccCCCCCCCCcc-cccCccc--cccccCCCC
Confidence 68889999999999999999999999988655 99999999999987 4321122222221 1111111 001134677
Q ss_pred hhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHH
Q 014577 81 VEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDV 160 (422)
Q Consensus 81 l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~ 160 (422)
++++++..........|+|||++|+++|+.|+.....+.+|+..||.|.. .++||+|||||+|||||||+|++++.+.
T Consensus 196 ~~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~Rd~~~~--~~~tS~LSpyL~~G~lSpr~v~~~~~~~ 273 (489)
T 1np7_A 196 PEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVG--ADYSSKFSPWLALGCLSPRFIYQEVKRY 273 (489)
T ss_dssp GGGSCCCCCCTTSSCCCCCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSS--STTSCCCHHHHHTTSSCHHHHHHHHHHH
T ss_pred HhhcCCCCcCccccCCCCCcHHHHHHHHHHHHhcchhHhhhhhcccCCcc--ccCCcCcChhhcCCCCCHHHHHHHHHHH
Confidence 77777632111122358999999999999999422349999999998753 5799999999999999999999999873
Q ss_pred HHhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcc
Q 014577 161 YQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGW 240 (422)
Q Consensus 161 ~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGw 240 (422)
.. ......+.++|++||+|||||+++++++|++.....+..+..++|..|++.|++|++|+|||||||||||||++|||
T Consensus 274 ~~-~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~ 352 (489)
T 1np7_A 274 EQ-ERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGF 352 (489)
T ss_dssp HH-HTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSC
T ss_pred hh-cccccchHHHHHHHHHHHHHHHHHHHHCcchhhhhcCcccccCCCccCHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Confidence 32 21222346779999999999999999888877666666677899999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchhhhh
Q 014577 241 MHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHF 320 (422)
Q Consensus 241 mHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~w 320 (422)
||||+|||||||||| +|+||||.|++||+++|||||+++|+|||||+||++++..|||||||++|++||||+|+|||||
T Consensus 353 mHnr~Rm~vAsfL~k-~L~idWr~G~~~F~~~LiD~D~a~N~g~wqw~ag~g~d~~~~RifNp~~q~~kfDp~g~yIr~w 431 (489)
T 1np7_A 353 MSNRGRQNVASFLCK-NLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHW 431 (489)
T ss_dssp CCHHHHHHHHHHHHH-TTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTTSCCCCCHHHHHHHHSTTSHHHHHH
T ss_pred CcHHHHHHHHHHHHH-hcCCCChhHHHHHHHHhcccChhcChHhhhhhhccCCCcccccccCHHHHhhhcCCCCccHHHh
Confidence 999999999999999 9999999999999999999999999999999996555555899999999999999999999999
Q ss_pred cccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHH
Q 014577 321 LPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373 (422)
Q Consensus 321 vPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~ 373 (422)
||||+++|+++||+||+++..+++++||.+|.+||.|||||+++|++|+++++
T Consensus 432 vPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~ 484 (489)
T 1np7_A 432 LPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQSVEARRKIEQ 484 (489)
T ss_dssp CGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCSSCHHHHHHHHHTCC-
T ss_pred CHHhhccCcccccCCccCCHHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999997655
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=6.9e-95 Score=759.12 Aligned_cols=354 Identities=30% Similarity=0.549 Sum_probs=299.1
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCC-C----CCccCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGD-V----GYFEIS 76 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~-~----~~~~~~ 76 (422)
+|++.|++.||+++++++++|++|++|.+++| ++|+|||+|++++.+... ..|.|.+. .++.... . ......
T Consensus 112 ~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g-~~~~vft~f~~~~~~~~~-~~p~~~p~-~~~~~~~~~~~~~~~~~~~ 188 (484)
T 1owl_A 112 QVAAALKTAGIRAVQLWDQLLHSPDQILSGSG-NPYSVYGPFWKNWQAQPK-PTPVATPT-ELVDLSPEQLTAIAPLLLS 188 (484)
T ss_dssp HHHHHHHHTTCEEEEECCSSSSCTTTCCCTTS-CCCSSHHHHHHHHHHSCC-CCCCCCCC-SCCCCCHHHHHHHGGGCCS
T ss_pred HHHHHHHHcCcEEEEecCCEEEchhhhcccCC-CCchhhHHHHHHHHHhcC-CCCCCCcc-ccccccccccccccccccC
Confidence 68889999999999999999999999999766 999999999999865432 12222221 1111100 0 000012
Q ss_pred CCCChhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHH
Q 014577 77 EVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQC 156 (422)
Q Consensus 77 ~~p~l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~ 156 (422)
.+|+++.+++..... . .|+|||++|+++|+.|+++. +.+|+..||.|+ .++||+|||||+|||||||+|+++
T Consensus 189 ~~~~~~~l~~~~~~~--~-~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~rd~p~---~~~tS~LSpyL~~G~lSpr~v~~~ 260 (484)
T 1owl_A 189 ELPTLKQLGFDWDGG--F-PVEPGETAAIARLQEFCDRA--IADYDPQRNFPA---EAGTSGLSPALKFGAIGIRQAWQA 260 (484)
T ss_dssp SCCCTGGGTCCCCSC--C-SSCSSHHHHHHHHHHHHHTG--GGGHHHHTTCTT---SCCSCCCHHHHHTTSSCHHHHHHH
T ss_pred CCCCHHHcCCCcccc--C-cCCCCHHHHHHHHHHHHHHH--HHHhccccCCCC---ccCCcCccHhHcCCCcCHHHHHHH
Confidence 366776666533211 3 68999999999999999875 999999999987 579999999999999999999999
Q ss_pred HHHHHHhc--cCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHH
Q 014577 157 LTDVYQNV--KKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQ 234 (422)
Q Consensus 157 ~~~~~~~~--~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRq 234 (422)
+.+..... .....+.+.|++||+|||||+++++++|++...++++.+..++|++|++.|++|++|+||||||||||||
T Consensus 261 ~~~~~~~~~~~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrq 340 (484)
T 1owl_A 261 ASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQ 340 (484)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSCCSTGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHHHHHHHHhCCccccccCChhhhcCCCcCCHHHHHHHHcCCCCChhHHHHHHH
Confidence 98754310 0011346789999999999999999999998877788888999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhhc-ccCCCCcccccCcccccccCCCC
Q 014577 235 LRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSC-SSFFYQYNRIYSPVSFGKKYDPN 313 (422)
Q Consensus 235 L~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~-g~~~~~~~RifnP~~q~~k~Dp~ 313 (422)
|++|||||||+|||||||||| +|+|||+.|++||+++|||||+|+|+|||||+|| |+|++| ||||||++|++||||+
T Consensus 341 L~~tG~mHnr~Rm~vAsfL~k-~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ag~G~d~~p-fRifNp~~q~~kfDp~ 418 (484)
T 1owl_A 341 LTETGWMHNRCRMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDAT 418 (484)
T ss_dssp HHHHSCCCHHHHHHHHHHHHH-TSCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCSSSCCC-CCCCCHHHHHHHHSTT
T ss_pred HHHhCCccHHHHHHHHHHHHH-hcCCCCcHHHHHHHHhcccCCcccCHHHHHHhhCcCCCCCc-cceeCHHHHhhhcCCC
Confidence 999999999999999999999 9999999999999999999999999999999995 788888 9999999999999999
Q ss_pred cchhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 014577 314 GNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYA 377 (422)
Q Consensus 314 G~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~ 377 (422)
|+|||||||||+++|+++||+||+++ ..+ | +||.|||||+++|++|+++|+++.+
T Consensus 419 g~yIr~wvPeL~~~p~~~ih~Pw~~~----~~~----~-~YP~PiVd~~~~r~~a~~~~~~~~~ 473 (484)
T 1owl_A 419 ATYIKRWLPELRHVHPKDLISGEITP----IER----R-GYPAPIVNHNLRQKQFKALYNQLKA 473 (484)
T ss_dssp CHHHHHHCGGGTTSCHHHHHHTCCCH----HHH----T-TSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHhChhhhcCChhhcCCcccch----hhh----c-CCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999983 222 3 8999999999999999988887665
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=6.8e-95 Score=756.61 Aligned_cols=348 Identities=27% Similarity=0.482 Sum_probs=292.2
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCC--CCCCCCCCCCCCCCCCCCCCccCCCCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLW--ASSPLPVSLSSLPPVGDVGYFEISEVP 79 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~--~~~p~p~~~~~~~~~~~~~~~~~~~~p 79 (422)
+|++.|++ |+++++++++|++|++|.+++| ++|+|||+|++++.+... .+.+.|.+. .++. +.. ....+|
T Consensus 115 ~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g-~~~~vft~f~~~~~~~l~~~~p~~~~~p~-~~~~-~~~---~~~~~~ 186 (471)
T 1dnp_A 115 EVERALRN--VVCEGFDDSVILPPGAVMTGNH-EMYKVFTPFKNAWLKRLREGMPECVAAPK-VRSS-GSI---EPSPSI 186 (471)
T ss_dssp HHHHHCTT--SEEEEECCSSSSCTTSSCCTTS-CCCSSHHHHHHHHHHHHHTCCCCCCCCCC-CCTT-CCC---CCCCCC
T ss_pred HHHHHhcC--cEEEEecCCEEEchhhcccCCC-CCCcchHHHHHHHHHhccccCCCCCCCcc-ccCc-ccc---cCCCCc
Confidence 56777765 9999999999999999999876 999999999998754311 111122111 1110 110 011233
Q ss_pred ChhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHH
Q 014577 80 TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159 (422)
Q Consensus 80 ~l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~ 159 (422)
+ +++.. .......|+|||++|+++|+.|+++. +.+|+..||.|+ .++||+|||||+|||||||+|++++.+
T Consensus 187 ~---l~~~~-~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~rd~p~---~~~tS~LSpyL~~G~lSpr~v~~~~~~ 257 (471)
T 1dnp_A 187 T---LNYPR-QSFDTAHFPVEEKAAIAQLRQFCQNG--AGEYEQQRDFPA---VEGTSRLSASLATGGLSPRQCLHRLLA 257 (471)
T ss_dssp C---CCSCC-CCCCTTTSCCSHHHHHHHHHHHHHTH--HHHHHHHTTCTT---SCCSCCCHHHHHHTSSCHHHHHHHHHH
T ss_pred c---cCCCc-cccccccCCCCHHHHHHHHHHHHHHH--HHHhhhccCCcC---ccCCCCCCHhHcCCCcCHHHHHHHHHH
Confidence 2 33321 11112358999999999999999865 999999999987 579999999999999999999999987
Q ss_pred HHHhccCCCCC-hHHHHHHHHHHHHHHHHHHcCCCcccc-ccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 014577 160 VYQNVKKHTSP-PVSLVGQLLWRDFFYTVAFGTPNFDRM-KGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237 (422)
Q Consensus 160 ~~~~~~~~~~~-~~~f~~eL~WRef~~~~~~~~p~~~~~-~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~ 237 (422)
..... ...+ .++|++||+|||||+++++++|++... +.++.++.++|++|++.|++|++|+|||||||||||||++
T Consensus 258 ~~~~~--~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~ 335 (471)
T 1dnp_A 258 EQPQA--LDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNS 335 (471)
T ss_dssp HCGGG--GGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred Hhccc--cccccHHHHHHHHHHHHHHHHHHHhCCchhccCCcchhhhcCCCcCCHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 54321 1245 778999999999999999999998876 7777788899999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcch
Q 014577 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNY 316 (422)
Q Consensus 238 tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~y 316 (422)
|||||||+||+||||||| +|+|||+.|++||+++|||||+|+|+|||||+| ||++++||||||||++|++||||+|+|
T Consensus 336 tG~mHnr~RMivAsFL~k-~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ag~G~d~~py~RifNp~~q~~kfDp~G~Y 414 (471)
T 1dnp_A 336 TGWMHNRLRMITASFLVK-DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEF 414 (471)
T ss_dssp HSCCCHHHHHHHHHHHHH-TSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHTTTCHH
T ss_pred HCCcCHHHHHHHHHHHHH-hcCCCchHHHHHHHHhccCCCcccCHHHHHhhcCCCCCCCCcceecCHHHHHHhcCCCchh
Confidence 999999999999999999 999999999999999999999999999999999 578899999999999999999999999
Q ss_pred hhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 014577 317 IRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375 (422)
Q Consensus 317 Ir~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~ 375 (422)
||||||||+++|+++||+||++ +..++|.+ +||.|||||+++|++|+++|+++
T Consensus 415 IrrwvPeL~~~p~~~ih~Pw~~----~~~~~~~~--~YP~PiVd~~~~r~~al~~~~~~ 467 (471)
T 1dnp_A 415 IRQWLPELRDVPGKVVHEPWKW----AQKAGVTL--DYPQPIVEHKEARVQTLAAYEAA 467 (471)
T ss_dssp HHHHCGGGTTSCTTGGGSHHHH----HHTTTCCC--SSCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHhChhhccCChhhcCCchhh----HHhcCCCC--CCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999986 45678876 89999999999999999777654
No 8
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.4e-92 Score=729.13 Aligned_cols=319 Identities=27% Similarity=0.414 Sum_probs=275.8
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCC-CCC-CCCCCCCCCCCCCCCCCCCccCCCCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQP-LWA-SSPLPVSLSSLPPVGDVGYFEISEVP 79 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~-~~~-~~p~p~~~~~~~~~~~~~~~~~~~~p 79 (422)
+|++.|++.||+++++++++|++|++| +|+|||||++++.+. ... +.+.|.+. .++. +.
T Consensus 109 ~v~~~l~~~gi~~~~~~~~~l~~~~~~-------~y~vftpf~~~~~~~~~~~p~~~~~~~~-~~~~-p~---------- 169 (440)
T 2e0i_A 109 KIRKVCEENGIEFKAYEDYLLTPKSLF-------HHRNFTSFYNEVSKVKVREPETMEGSFD-VTDS-SM---------- 169 (440)
T ss_dssp HHHHHHHTTTCEEEEECCSCSSCGGGC-------CCSSHHHHHHHHTTSCCCCCCCCCCCBC-CCSS-SB----------
T ss_pred HHHHHHHHcCceEEEecCCEEEccccc-------CcccCcHHHHHHHHhcccccccCCCCcc-cCCC-cc----------
Confidence 688899999999999999999999999 689999999998765 211 11111110 0100 00
Q ss_pred ChhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHH
Q 014577 80 TVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTD 159 (422)
Q Consensus 80 ~l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~ 159 (422)
.+.++ .. ....++|||++|+++|+ |++++ +.+| ..||.|+ .++||+|||||+|||||||+|++++
T Consensus 170 ~~~~l--p~----~~~~~~~Ge~~A~~~L~-Fl~~~--l~~Y-~~rd~p~---~~~tS~LSPyL~~G~lSpr~v~~~~-- 234 (440)
T 2e0i_A 170 NVDFL--LT----FKKIESPLFRGGRREGL-YLLHR--NVDF-RRRDYPA---ENNNYRLSPHLKFGTISMREAYYTQ-- 234 (440)
T ss_dssp CGGGG--GG----TCCCCCTTCCCSHHHHH-HHHTC--CCCG-GGTTCTT---TTCCCCCHHHHHTTSSCHHHHHHHS--
T ss_pred hhhhC--Cc----cccCCCCCHHHHHHHHH-HHHhh--hhcC-CcCCCcc---ccCCCCccHhHhCCCCCHHHHHHHh--
Confidence 01111 00 12247999999999999 99876 9999 9999986 6899999999999999999999887
Q ss_pred HHHhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 014577 160 VYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWG 239 (422)
Q Consensus 160 ~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tG 239 (422)
.+.+.|++||+|||||+++++++|++...+.++.++.++|..|++.|++|++|+|||||||||||||++||
T Consensus 235 ---------~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG 305 (440)
T 2e0i_A 235 ---------KGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTG 305 (440)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCSSGGGGGCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHS
T ss_pred ---------cCHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhcCCcccchHHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 13568999999999999999999999887788888899999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchhhh
Q 014577 240 WMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRH 319 (422)
Q Consensus 240 wmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~ 319 (422)
|||||+|||||||||| +|+|||+.|++||+++|||||+|+|+|||||+||++++. |||||||++|++||||+|+||||
T Consensus 306 ~mHnr~Rm~vAsfL~k-~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~-~~RifNp~~q~~kfDp~g~yIr~ 383 (440)
T 2e0i_A 306 YINGRVRMLVAFFLVK-VLFVDWRWGERYFATKLVDYDPAINNGNWQWIASTGVDY-MFRVFNPWKQQEKFDPEAKFIKE 383 (440)
T ss_dssp CCCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCC-SCCCCCHHHHHHHHCTTCHHHHH
T ss_pred chhHHHHHHHHHHHHH-HhCCCccHHHHHHHHHcccCCccccHHHHHHHhCcCCCC-CCCccCHHHHHHHhCCCcHhHHH
Confidence 9999999999999999 999999999999999999999999999999999655555 99999999999999999999999
Q ss_pred hcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 014577 320 FLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAY 376 (422)
Q Consensus 320 wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~ 376 (422)
|||||+++|+++||+||++ +|.+||.|||||+++|++|+++|+++.
T Consensus 384 wvPeL~~~p~~~ih~pw~~-----------~~~~YP~PiVd~~~~r~~a~~~~~~~~ 429 (440)
T 2e0i_A 384 WVEELKDVPPSIIHSIYKT-----------KVPGYPSPIVNWLERVNYVKSEYKNVK 429 (440)
T ss_dssp HCGGGGGSCHHHHTTTTTS-----------CCTTSCCCSSCHHHHHHHHHHHHHHC-
T ss_pred hCHHhhccCcccccCchhh-----------cCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999985 377999999999999999998777654
No 9
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=6.9e-92 Score=742.78 Aligned_cols=357 Identities=26% Similarity=0.409 Sum_probs=275.6
Q ss_pred HHHHHHHHCC--CeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 014577 2 KVKDYASTAG--IEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVP 79 (422)
Q Consensus 2 ~v~~~l~~~g--i~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p 79 (422)
+|++.|++.| |+++++++++|++|++|.+..| ++|+|||+|++++.+......|.|.+. .++..+. ......+|
T Consensus 155 ~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g-~~~~vft~F~r~~~~~~~~~~p~~~p~-~~~~~~~--~~~~~~~~ 230 (525)
T 2j4d_A 155 LVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVF-DLPDVYTQFRKSVEAKCSIRSSTRIPL-SLGPTPS--VDDWGDVP 230 (525)
T ss_dssp HHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGG-GCCSSHHHHHHHHHHHCCCCCCCCBCS-CCCCCCC--CSCCCCCC
T ss_pred HHHHHHHhcCCceEEEEecCCEEEccccccccCC-CCcccHHHHHHHHHHhcCCCCCCCCcc-ccCCccc--cccccCCC
Confidence 6888999999 8999999999999999999766 999999999999876321122222221 1111110 01123456
Q ss_pred ChhhcCCCCCCCCCCCCCCccHHHHHHHHHHHh-cCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHH
Q 014577 80 TVEELGYKGYGQEELSPFRGGESEALKKLRESI-SDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLT 158 (422)
Q Consensus 80 ~l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl-~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~ 158 (422)
+++++|+..........|+|||++|+++|+.|+ +. ..+.+|+..||.+.. .++||+|||||+|||||||+|++++.
T Consensus 231 ~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~-~~l~~Y~~~Rd~~~~--~~~tS~LSPyL~~G~LSpR~v~~~~~ 307 (525)
T 2j4d_A 231 TLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKK-DLLKVYKETRNGMLG--PDYSTKFSPWLAFGCISPRFIYEEVQ 307 (525)
T ss_dssp CTTTTTCCCCCCCSEEEECCSHHHHHHHHHHHHTTS-CCGGGHHHHTTCCSS--STTSCCCHHHHHTTSSCHHHHHHHHH
T ss_pred CHHHcCCCcccccccCCCCCcHHHHHHHHHHHHhhC-chHhhhcccCCCccc--cccCCCcChhhcCCcCCHHHHHHHHH
Confidence 677776632111111248999999999999999 42 239999999997642 57999999999999999999999998
Q ss_pred HHHHhccCCCCChHHHHHHHHHHHHHHHHHHcC-CCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 014577 159 DVYQNVKKHTSPPVSLVGQLLWRDFFYTVAFGT-PNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRK 237 (422)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~-p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~ 237 (422)
+.... .....+.++|++||+|||||+++++++ |.+......+ ...++|+++++.|++|++|+|||||||||||||++
T Consensus 308 ~~~~~-~~~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~ 385 (525)
T 2j4d_A 308 RYEKE-RVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPR-NVQGKWSQDQKLFESWRDAKTGYPLIDANMKELST 385 (525)
T ss_dssp HHHHH-TCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGTSTTTTT-TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHH
T ss_pred HHhhc-ccccccHHHHHHHHHHHHHHHHHHHHcCchhhhccCch-hhcCCCCCCHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 65432 122234678999999999999998654 4443333333 36789999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchh
Q 014577 238 WGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYI 317 (422)
Q Consensus 238 tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yI 317 (422)
|||||||+|||||||||| +|+||||+|++||+++|||||+|+|+|||||+||++.+..+||||||++|+++|||+|+||
T Consensus 386 tG~mHnr~Rm~vAsfL~k-~L~idWr~G~~~F~~~LiD~D~a~n~g~WQw~aG~g~D~~~~RifNP~~q~kk~Dp~G~YI 464 (525)
T 2j4d_A 386 TGFMSNRGRQIVCSFLVR-DMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYV 464 (525)
T ss_dssp HSCCCHHHHHHHHHHHHH-TSCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSSCGGGCCCCCHHHHHHHHCTTCHHH
T ss_pred HCCcCHHHHHHHHHHHHH-hcCCCcHHHHHHHHHhccccchhcChHHHHhhcCCCCCccccccCCHHHHhhhcCCCchhH
Confidence 999999999999999999 9999999999999999999999999999999996555444589999999999999999999
Q ss_pred hhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHH
Q 014577 318 RHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLG 373 (422)
Q Consensus 318 r~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~ 373 (422)
|||||||+++|+++||+||+++ .++|+||.+||.|||||.++|+++++..+
T Consensus 465 rrwvPEL~~~p~~~ih~Pw~~~-----~~~~~~g~~Yp~Pi~~~~~~~~~~~~~~~ 515 (525)
T 2j4d_A 465 AFWLQQLRRLPKEKRHWPGRLM-----YMDTVVPLKHGNGPMAGGSKSGGGFRGSH 515 (525)
T ss_dssp HHHSGGGTTSCTTTTTSCHHHH-----TCCCSSCCSCCC-----------------
T ss_pred HHhChhhhcCChhcccCCccCc-----ccccccCCCCCCCcccchhhhhccchhhh
Confidence 9999999999999999999873 57899999999999999999999986544
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=1.7e-87 Score=691.83 Aligned_cols=310 Identities=27% Similarity=0.471 Sum_probs=266.2
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCh
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVPTV 81 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p~l 81 (422)
+|++.| ||+++++++++|++|++ | ++|+|||+|+|.+. ... .|.+.+.. + ..+ + ....+|.
T Consensus 107 ~v~~~l---~i~~~~~~~~~l~~~~~-----~-~~~~~~t~f~k~~~-~~~--~p~~~p~~-~-~~p-~---~~~~l~~- 167 (420)
T 2j07_A 107 RVREAL---PVPLHLLPAPHLLPPDL-----P-RAYRVYTPFSRLYR-GAA--PPLPPPEA-L-PKG-P---EEGEIPR- 167 (420)
T ss_dssp HHHHHC---SSCEEEECCCCSSCTTC-----S-SCCSSHHHHHTTCC-CCC--CCCCCCSS-C-CCC-C---CCCCCCC-
T ss_pred HHHHHc---CCeEEEeCCCEEEccCC-----C-CccccccHHHHHHh-hcc--CCCCCccc-c-CCC-C---ccccCCC-
Confidence 455555 99999999999999998 4 89999999999886 211 22221111 0 011 0 0001121
Q ss_pred hhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHH
Q 014577 82 EELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVY 161 (422)
Q Consensus 82 ~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~ 161 (422)
.......|+|||++|+++|+.|++++ +.+|+..||.|+ .++||+|||||+|||||||+|++++.+..
T Consensus 168 --------~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~rd~p~---~~~tS~LSpyL~~G~lSpr~v~~~~~~~~ 234 (420)
T 2j07_A 168 --------EDPGLPLPEPGEEAALAGLRAFLEAK--LPRYAEERDRLD---GEGGSRLSPYFALGVLSPRLAAWEAERRG 234 (420)
T ss_dssp --------CCCSSCCCCCSHHHHHHHHHHHHHHT--GGGHHHHTTCTT---CTTSCCCHHHHHTTSSCHHHHHHHHHHHC
T ss_pred --------cccccccCCCcHHHHHHHHHHHHHHH--HhhhhhccCCCC---ccCCCCcchhhcCCccCHHHHHHHHHHHh
Confidence 01112358999999999999999765 999999999997 57999999999999999999999987643
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhccc
Q 014577 162 QNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWM 241 (422)
Q Consensus 162 ~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwm 241 (422)
..+.++|++||+|||||+++++++|++...+.++.++.++|+.|++.|++|++|+|||||||||||||++||||
T Consensus 235 ------~~~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~~~~~~l~w~~d~~~~~~w~~G~TG~P~vDAaMrqL~~tG~m 308 (420)
T 2j07_A 235 ------GEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFL 308 (420)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCC
T ss_pred ------ccCHHHHHHHHHHHHHHHHHHHhCCcccccccchhhhcCCcccCHHHHHHHHcCCCCcHhHHHHHHHHHHhCCC
Confidence 23467899999999999999999999887777777888999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhhhh
Q 014577 242 HHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHF 320 (422)
Q Consensus 242 Hnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~w 320 (422)
|||+||+||||||| +|+|||+.|++||+++|||||+|+|+|||||+| +|.++.||||||||++|++||||+|+|||+|
T Consensus 309 Hnr~Rm~vasfl~k-~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~~pyfR~fNp~~q~~kfDp~g~yir~w 387 (420)
T 2j07_A 309 SNRARMNAAQFAVK-HLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRW 387 (420)
T ss_dssp CHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHHHHHHSTTSHHHHHH
T ss_pred ChHHHHHHHHHHHH-hcCCCChHHHHHHHHHhhcCCccccHHHHHHHHccCCCCCCCceeeCHHHHHHHhCCCchhHHHh
Confidence 99999999999999 999999999999999999999999999999999 5777899999999999999999999999999
Q ss_pred cccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 014577 321 LPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375 (422)
Q Consensus 321 vPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~ 375 (422)
||||+++| ||.|||||+++|++|+++|+++
T Consensus 388 ~pel~~~p-------------------------YP~Pivd~~~~r~~a~~~~~~~ 417 (420)
T 2j07_A 388 APEYPSYA-------------------------PKDPVVDLEEARRRYLRLARDL 417 (420)
T ss_dssp CTTCSSSS-------------------------CSSCSSCHHHHHHHHHHHHHHH
T ss_pred ChhhcCCC-------------------------CCCCccCHHHHHHHHHHHHHHh
Confidence 99999997 9999999999999999877754
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=4.7e-68 Score=557.31 Aligned_cols=308 Identities=18% Similarity=0.216 Sum_probs=227.8
Q ss_pred HHHHHHH--HCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 014577 2 KVKDYAS--TAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVGDVGYFEISEVP 79 (422)
Q Consensus 2 ~v~~~l~--~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~p 79 (422)
+|++.|+ +.||++++|++++|++|++|.+++ +|.+||++.+..........+.|.. +..++.+. .......++
T Consensus 149 ~V~~~l~~~~~gi~~~~~~~~~l~~p~~v~~~~---~~~~~t~~~~~~~~~~~~~~~~p~~-~~~~~~~~-~~~~~~~~~ 223 (506)
T 3umv_A 149 AVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM---EYSAKTFRGKVSKVMDEYLVEFPEL-PAVVPWDR-EQPEGVDWD 223 (506)
T ss_dssp HHHHHHHHHCTTSEEEEECCSCSSCHHHHCSSC---CSSHHHHHHHHHTTHHHHSCCCCCC-CCCCCCCS-CCCCCCCHH
T ss_pred HHHHHHhhccCCeEEEEeCCcEEECcccccCCC---CCCccCHHHHHHHhccccccCCCCC-CCcccccc-ccccccChh
Confidence 5777786 789999999999999999998764 4667776555432211000011100 00000000 000000111
Q ss_pred Chhh-c-CCCCCCCCCCCCCCccHHHHHHHH----HHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHH
Q 014577 80 TVEE-L-GYKGYGQEELSPFRGGESEALKKL----RESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYF 153 (422)
Q Consensus 80 ~l~~-l-g~~~~~~~~~~~~~gGe~~A~~~L----~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v 153 (422)
.+.+ + ++.. .......|+|||++|+++| +.|+++. +.+|+..||.|+. .++||+|||||+|||||||+|
T Consensus 224 ~l~~~~~~~~~-~~~~~~~~~~Ge~~A~~~L~~~~~~Fl~~~--l~~Y~~~Rd~p~~--~~~tS~LSPyL~~G~lS~r~v 298 (506)
T 3umv_A 224 ALIARVCSEAE-NVPEIDWCEPGEEAAIEALLGSKDGFLTKR--IKSYETDRNDPTK--PRALSGLSPYLHFGHISAQRC 298 (506)
T ss_dssp HHHHHHHHTSC-CCCCCCSSCCSHHHHHHHHHCTTTCHHHHT--GGGHHHHTTCTTC--GGGSCCCHHHHHHTSSCHHHH
T ss_pred hhhhhhccccc-cccccCCCCCCHHHHHHHHHhhHHHHHHhH--HhhhccccCCccc--cCCCccCCHHHhCCCcCHHHH
Confidence 1211 1 1111 1111223689999999999 9999765 9999999999973 379999999999999999999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHH-HHHHHHHHcCCCccccccccccCCCCCCC--------CH-H---HHHHHHc
Q 014577 154 YQCLTDVYQNVKKHTSPPVSLVGQLLWR-DFFYTVAFGTPNFDRMKGNRICKQIPWSN--------DD-E---LLAAWRE 220 (422)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~~~~~~~p~~~~~~~~~~~~~~~w~~--------~~-~---~~~aW~~ 220 (422)
++++.+.... ...+.++|++||+|| |||+++++++|++.... ..++|.. |. + .|++|++
T Consensus 299 ~~~~~~~~~~---~~~~~~~f~~eL~WRREf~~~~~~~~p~~~~~~-----~~~~w~~~~l~~~~~d~~~~~~~~~~w~~ 370 (506)
T 3umv_A 299 ALEAKKCRHL---SPKSVDAFLEELVVRRELADNFCYYQPQYDSLS-----GAWEWARKTLMDHAADKREHIYTREQLEN 370 (506)
T ss_dssp HHHHHHHGGG---SHHHHHHHHHHHTHHHHHHHHHHHHCTTTTSGG-----GSCHHHHHHHHHTTTSCCSCCCCHHHHHT
T ss_pred HHHHHHHHhh---ccccHHHHHHHHHHhHHHHHHHHHhCcchhhhh-----ccchhhhhhhhhhcccchhhhccHHHHHc
Confidence 9998875432 123568999999996 99999999999886543 2345531 21 2 4999999
Q ss_pred CCCCcHHHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHH-------HHHHh-ccccccCCcccchhhhhcc-
Q 014577 221 ARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRD-------VFDRL-LIDSDWAINNGNWLWLSCS- 291 (422)
Q Consensus 221 G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~-------~F~~~-LiD~D~a~N~~~Wqw~a~g- 291 (422)
|+|||||||||||||++|||||||+||+|| | +| |||+.|++ ||+++ |||||+++|++||||+|||
T Consensus 371 G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~a----k-~l-l~W~~g~~~~~~~a~~f~~~~llD~d~~~n~~~wqw~a~G~ 444 (506)
T 3umv_A 371 AKTHDPLWNASQLEMVHHGKMHGFMRMYWA----K-KI-LEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGL 444 (506)
T ss_dssp TCSSCHHHHHHHHHHHHHSCCCHHHHHHHH----H-HH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHhCchhHHHHHHHH----H-hh-ccCCCCHHHHHHHHHHHhhccCcccCccccccceeEEecCC
Confidence 999999999999999999999999999997 7 88 99999999 99996 9999999999999999964
Q ss_pred ----cCCCCcc---cccCcccccccCCCCc--chhhhhcccccCCCCCccc
Q 014577 292 ----SFFYQYN---RIYSPVSFGKKYDPNG--NYIRHFLPVLKDMPKEYIY 333 (422)
Q Consensus 292 ----~~~~~~~---RifnP~~q~~k~Dp~G--~yIr~wvPEL~~~p~~~ih 333 (422)
.+..||| |||||++|++||||+| +|||+|||||+++|.+.-+
T Consensus 445 ~~~g~~~~p~fg~iR~~np~~q~~k~Dp~gyi~yir~wvpel~~~~~~~~~ 495 (506)
T 3umv_A 445 HDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEESP 495 (506)
T ss_dssp TSCCCCCBTTTBTSCCCCHHHHHHHSCHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCCccccccCcceeECHHHHHHHhCCCchHHHHHHhCHHhcCCCccccc
Confidence 3457888 9999999999999999 9999999999999987444
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=1.7e-67 Score=551.68 Aligned_cols=300 Identities=19% Similarity=0.233 Sum_probs=220.4
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCC----CCC-CCCCCCCCC-CCCCCCCCCCc-c
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQP----LWA-SSPLPVSLS-SLPPVGDVGYF-E 74 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~----~~~-~~p~p~~~~-~~~~~~~~~~~-~ 74 (422)
.++++++..||+++++++++|++|+++.+++ .|++||+|.+ +.+. ..+ +.+.|.+.+ .+|........ .
T Consensus 144 ~~~~v~~~lgi~~~~~~~~~l~~~~~~~~~~---~~~v~tf~~~-~~~~~~~~~~~~p~~~p~~~~~~lp~~~~~~~~~~ 219 (482)
T 2xry_A 144 WIEKVISGISIPFFEVDAHNVVPCWEASQKH---EYAAHTFRPK-LYALLPEFLEEFPELEPNSVTPELSAGAGMVETLS 219 (482)
T ss_dssp HHHHHHHHCCSCEEEECCSSSSCHHHHCSSC---CSSHHHHHHH-HHHHHHHHCCCCCCCCCCSSCCC---------CHH
T ss_pred HHHHHHHHcCCEEEEEeCCEEccccccccCC---CCceecchHH-HHHHHHhhccccCCCCCCCCccccCCccchhhhhh
Confidence 3556677779999999999999999998753 4999996654 3221 111 000111100 00110000000 0
Q ss_pred -CC---CCCChh--hcCCCCCCCCC-CCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCc
Q 014577 75 -IS---EVPTVE--ELGYKGYGQEE-LSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGC 147 (422)
Q Consensus 75 -~~---~~p~l~--~lg~~~~~~~~-~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~ 147 (422)
.. .+|.+. .+|... .... ...|+|||++|+++|+.|++++ +.+|+..||.|+ .++||+|||||+|||
T Consensus 220 ~l~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~Rd~p~---~~~tS~LSPyL~~G~ 293 (482)
T 2xry_A 220 DVLETGVKALLPERALLKNK-DPLFEPWHFEPGEKAAKKVMESFIADR--LDSYGALRNDPT---KNMLSNLSPYLHFGQ 293 (482)
T ss_dssp HHHHHHHHHHGGGCCBCTTS-CBCCCTTSCCCSHHHHHHHHHHHHHHT--HHHHHHHTTCTT---SCCSCCCHHHHHTTS
T ss_pred hhcccCCCCCcchhhhcccc-ccccccCCCCCcHHHHHHHHHHHHHHH--HhhhccccCCCC---ccCCCCcCHHHhCCc
Confidence 00 011111 222111 0000 1158999999999999999865 999999999997 589999999999999
Q ss_pred CcHHHHHHHHHHHHHhccCCCCChHHHHHHHH-HHHHHHHHHHcCCCccccccccccCC--CC-CCCCH-H---HHHHHH
Q 014577 148 LSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL-WRDFFYTVAFGTPNFDRMKGNRICKQ--IP-WSNDD-E---LLAAWR 219 (422)
Q Consensus 148 IS~R~v~~~~~~~~~~~~~~~~~~~~f~~eL~-WRef~~~~~~~~p~~~~~~~~~~~~~--~~-w~~~~-~---~~~aW~ 219 (422)
||||+|++++.+... ...+.++|++||+ ||||++++++++|++...+..+.+.. +. |..++ + .+++|+
T Consensus 294 LSpR~v~~~~~~~~~----~~~~~e~fl~ELi~WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~ 369 (482)
T 2xry_A 294 ISSQRVVLEVEKAES----NPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFE 369 (482)
T ss_dssp SCHHHHHHHHHHCCC----CTTHHHHHHHHHTHHHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHH
T ss_pred cCHHHHHHHHHHhhc----ccccHHHHHHHHHHHHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHH
Confidence 999999999875321 2346789999997 99999999999999886554332211 11 33332 2 599999
Q ss_pred cCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCC-hHHHHHHHHhc-------cccccCCcccchhhhhcc
Q 014577 220 EARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHW-EKGRDVFDRLL-------IDSDWAINNGNWLWLSCS 291 (422)
Q Consensus 220 ~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idW-r~G~~~F~~~L-------iD~D~a~N~~~Wqw~a~g 291 (422)
+|+|||||||||||||++|||||||+||+|| | +| ||| +.|++||+++| ||||+|+|+|||||+|||
T Consensus 370 ~G~TG~P~VDAaMrqL~~tG~mHnr~RM~va----k-~L-idW~~~ge~~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG 443 (482)
T 2xry_A 370 AGKTHDPLWNASQMELLSTGKMHGYTRMYWA----K-KI-LEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGG 443 (482)
T ss_dssp TTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH----H-HH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHC
T ss_pred hCCcCCHHHHHHHHHHHHhCccccHHHHHHH----c-cc-CCCCchHHHHHHHHHHhcCceeccCCCccchhHhhhhhcC
Confidence 9999999999999999999999999999997 7 77 999 89999999994 999999999999999987
Q ss_pred cCCC-----Ccc---cccCcccccccCCCCcchhhhhcc
Q 014577 292 SFFY-----QYN---RIYSPVSFGKKYDPNGNYIRHFLP 322 (422)
Q Consensus 292 ~~~~-----~~~---RifnP~~q~~k~Dp~G~yIr~wvP 322 (422)
++++ ||| |||||++|++||||+| |||+|||
T Consensus 444 ~~~~~~~~~p~fg~~R~fnp~~q~~kfD~~~-yir~w~~ 481 (482)
T 2xry_A 444 VHDRAWGEREVTGKIRYMSYEGCKRKFDVKL-YIEKYSA 481 (482)
T ss_dssp TTSCCCCCBTTTBTSCCCCHHHHHHHSCHHH-HHHHTC-
T ss_pred CCCCCcccccccccceeechhHhhhhcCHHH-HHHHHhc
Confidence 6664 688 9999999999999999 9999995
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.8e-60 Score=494.75 Aligned_cols=346 Identities=15% Similarity=0.133 Sum_probs=254.9
Q ss_pred HHHHHHHCCCeEEeecCC-eeecCccccc--ccCCCCCccchhHHHHhcCC-----C--CC-----------CCCCCCCC
Q 014577 3 VKDYASTAGIEVFSPVSH-TLFNPADIIQ--KNGGKPPLTYQSFLKLAGQP-----L--WA-----------SSPLPVSL 61 (422)
Q Consensus 3 v~~~l~~~gi~~~~~~~~-~L~~p~~i~~--~~g~~~y~vft~F~k~~~~~-----~--~~-----------~~p~p~~~ 61 (422)
+.+.+++.||+++.+.+. .|.+|+++.+ .. +++|.++ +|+|.+++. . .| ..+.|...
T Consensus 123 ~~~~l~~~gi~v~~~~~~~fL~~~~e~~~~~~~-~k~~~me-~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~ 200 (522)
T 3zxs_A 123 LIEALEAMPLPVRFLPDDRFLCPADEFARWTEG-RKQLRME-WFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDL 200 (522)
T ss_dssp HHHHHHHSSSCEEEECCCCSSSCHHHHHHHHTT-CSSCCHH-HHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCT
T ss_pred HHHHHHHcCCcEEEeCCCCcccCHHHHHHhhcC-CCCeEee-HHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCCC
Confidence 445666779999999985 7999999987 44 4999995 999977521 0 00 00111111
Q ss_pred CCCCCCCCCCCccC--CCCCChhhcCCCCCCCCCCCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCC-CCCCCCC
Q 014577 62 SSLPPVGDVGYFEI--SEVPTVEELGYKGYGQEELSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAY-LKPATTV 138 (422)
Q Consensus 62 ~~~~~~~~~~~~~~--~~~p~l~~lg~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~-~~~~tS~ 138 (422)
..|..+......+ ..++.+++.............|++||.+|+++|+.|++++ +.+|+..||.|+.. ...+||+
T Consensus 201 -~~p~~~~~~~d~~~~~v~~~v~~~~~~~~G~~~~~~~~~ge~~A~~~L~~Fl~~r--l~~Y~~~rD~~~~~~~~~~tS~ 277 (522)
T 3zxs_A 201 -LRPRPLRFEPDAEVRAVLDLVEARFPRHFGRLRPFHWATDRAEALRALDHFIRES--LPRFGDEQDAMLADDPFLSHAL 277 (522)
T ss_dssp -TCCCCCCCCCCHHHHHHHHHHHHHCTTSSSCCCSCCCCCSHHHHHHHHHHHHHHT--GGGTTTTTTCCBTTBSSTTCCC
T ss_pred -CCCCCCCCCCchhHHHHHHHHHHhccCCcCccccCCCCCCHHHHHHHHHHHHHhh--hhhhhhhccCcccCCCCCCccc
Confidence 0111110000000 0011111110010111223569999999999999999865 99999999998742 1237999
Q ss_pred CchhhccCcCcHHHHHHHHHHHHHhccCCCCChHHHHHHHH-HHHHHHHHHHcC-CCccccccccccCCCCCCCCHHHHH
Q 014577 139 LSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQLL-WRDFFYTVAFGT-PNFDRMKGNRICKQIPWSNDDELLA 216 (422)
Q Consensus 139 LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~f~~eL~-WRef~~~~~~~~-p~~~~~~~~~~~~~~~w~~~~~~~~ 216 (422)
|||||++||||||+|++++.+..........+.++|++||+ |||||+++++++ |.+...+.......+ .+
T Consensus 278 LSpyL~~G~LSpRev~~~~~~~~~~~~~~~~~~e~firellgWREF~~~l~~~~~P~~~~~n~~~~~~~l--------~~ 349 (522)
T 3zxs_A 278 LSSSMNLGLLGPMEVCRRAETEWREGRAPLNAVEGFIRQILGWREYVRGIWTLSGPDYIRSNGLGHSAAL--------PP 349 (522)
T ss_dssp CHHHHHHTSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHHHHGGGGGGCCTTCCCBCC--------CG
T ss_pred ccHHHhCCCcCHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccc--------hH
Confidence 99999999999999999998766432212234678999986 999999999863 666543332222222 23
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhcccc----ccCCcccchhhhhccc
Q 014577 217 AWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLIDS----DWAINNGNWLWLSCSS 292 (422)
Q Consensus 217 aW~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~LiD~----D~a~N~~~Wqw~a~g~ 292 (422)
+|++|+|||||||||||||++|||||||+|||||||||| +|+|||+.|++||+++|||| +.++++|+|||++||+
T Consensus 350 ~~w~G~TG~P~VDA~MRqL~~TGwmHnr~RmmVasfl~k-~L~idWr~G~~wF~~~LiD~~~Wv~~~N~~Gm~q~a~Gg~ 428 (522)
T 3zxs_A 350 LYWGKPTRMACLSAAVAQTRDLAYAHHIQRLMVTGNFAL-LAGVDPAEVHEWYLSVYIDALEWVEAPNTIGMSQFADHGL 428 (522)
T ss_dssp GGGTCCCSCHHHHHHHHHHHHHSCCCHHHHHHTHHHHHH-HTTBCHHHHHHHHHHHCTTCCHHHHHHHHHTTTTCCSSST
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHhcchhhhhhccccccchheecCCc
Confidence 455999999999999999999999999999999999999 99999999999999999999 4567889999999775
Q ss_pred CCCCcccccCcccccccCCCCcchhhhhcccccCCCCCcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHH
Q 014577 293 FFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKL 372 (422)
Q Consensus 293 ~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~ 372 (422)
.+ +|.|..+|.||+|+ ++.+...+|+|++... +..|.++..|+..|..|.+.-+ .-.||
T Consensus 429 ~~------------~KPY~~~~~yI~km----s~yc~~c~y~~~~~~g----~~~cp~~~lYW~Fl~rh~~~l~-~n~Rm 487 (522)
T 3zxs_A 429 LG------------SKPYVSSGAYIDRM----SDYCRGCAYAVKDRTG----PRACPFNLLYWHFLNRHRARFE-RNPRM 487 (522)
T ss_dssp TC------------SSCCCCCHHHHHHH----CSCGGGSSSBTTCSSS----TTBCHHHHHHHHHHHHTHHHHT-TCGGG
T ss_pred cC------------CCCCCCchHHHHHH----hccccCCccCccccCC----CccCCCccchHHHHHHHHHHHc-cChhH
Confidence 42 78899999999999 5889999999998775 4678899999999998887765 66788
Q ss_pred HHHHHHhhhcc
Q 014577 373 GEAYALNQKLN 383 (422)
Q Consensus 373 ~~~~~~~~~~~ 383 (422)
.-.|+.+.+..
T Consensus 488 ~~~~~~~~~~~ 498 (522)
T 3zxs_A 488 VQMYRTWDRME 498 (522)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHhhcCC
Confidence 88899888753
No 14
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=43.54 E-value=5.8 Score=32.59 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=18.9
Q ss_pred cccCCCCcchhhhhcccccCCC
Q 014577 307 GKKYDPNGNYIRHFLPVLKDMP 328 (422)
Q Consensus 307 ~~k~Dp~G~yIr~wvPEL~~~p 328 (422)
..+|||+|.|.++|--+++.++
T Consensus 87 ~~KyDP~g~y~~ky~~~~~~~~ 108 (109)
T 2gvs_A 87 KAKYDPDGTYSKKYEDREKELH 108 (109)
T ss_dssp HHHHCTTCTTTHHHHTTTCCSC
T ss_pred HHHHCCCchHHHHHHHHHHHcc
Confidence 3689999999999999888764
No 15
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=26.00 E-value=1e+02 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHhhhccCccCChHHHHHHHHhcc
Q 014577 226 PWIDAIMVQLRKWGWMHHLARHCVACFLTRGDMFVHWEKGRDVFDRLLI 274 (422)
Q Consensus 226 P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~L~idWr~G~~~F~~~Li 274 (422)
||+-+.+..|++..-+.|..|+.++.||.. .+++=.+-..+|...+.
T Consensus 20 pCM~~l~~~Lr~~~hL~h~gR~ql~lFLkg--iGls~ee~l~f~r~~F~ 66 (194)
T 3lgb_A 20 LCIKNLMEGLKKNHHLRYYGRQQLSLFLKG--IGLSADEALKFWSEAFT 66 (194)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTCCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 688888899999999999999999999977 78888888888877653
No 16
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=22.92 E-value=19 Score=29.68 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=17.0
Q ss_pred cccCCCCcchhhhhcccccC
Q 014577 307 GKKYDPNGNYIRHFLPVLKD 326 (422)
Q Consensus 307 ~~k~Dp~G~yIr~wvPEL~~ 326 (422)
..+|||+|.|.++|--+++.
T Consensus 85 ~~KyDP~g~y~~~y~~~~~~ 104 (112)
T 1k19_A 85 TAKYDPTGNWRKKYEDRAKA 104 (112)
T ss_dssp HHSSTTTCSSHHHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHHHH
Confidence 36999999999999887754
Done!