Query 014577
Match_columns 422
No_of_seqs 237 out of 1626
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 14:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014577.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014577hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u3da1 a.99.1.1 (A:198-497) C 100.0 9.8E-88 7.1E-92 662.9 22.4 277 96-378 15-297 (300)
2 d1np7a1 a.99.1.1 (A:205-483) C 100.0 3.5E-86 2.5E-90 645.6 20.4 271 94-368 5-275 (279)
3 d1dnpa1 a.99.1.1 (A:201-469) C 100.0 2.7E-84 1.9E-88 629.1 17.0 265 98-375 1-267 (269)
4 d1owla1 a.99.1.1 (A:205-475) C 100.0 2.5E-83 1.9E-87 622.4 17.5 265 96-375 1-267 (271)
5 d2j07a1 a.99.1.1 (A:172-405) C 100.0 1.3E-68 9.8E-73 507.6 16.4 219 98-328 5-224 (234)
6 d1owla2 c.28.1.1 (A:3-204) DNA 98.8 1.6E-09 1.2E-13 97.9 6.8 82 2-86 110-196 (202)
7 d1u3da2 c.28.1.1 (A:13-197) Cr 98.7 7.7E-09 5.6E-13 92.1 6.1 49 2-51 109-157 (185)
8 d1np7a2 c.28.1.1 (A:1-204) Cry 98.5 9.9E-08 7.2E-12 85.8 7.4 48 2-50 120-167 (204)
9 d1dnpa2 c.28.1.1 (A:1-200) DNA 98.3 2.4E-07 1.7E-11 83.2 4.5 45 2-49 115-159 (200)
10 d2j07a2 c.28.1.1 (A:2-171) DNA 97.5 3.6E-05 2.6E-09 66.9 4.4 34 17-51 113-146 (170)
11 d1n8va_ a.118.21.1 (A:) Chemos 43.2 2 0.00015 32.9 -0.4 18 307-324 83-100 (101)
12 d2fq4a1 a.4.1.9 (A:9-77) Trans 36.4 9.7 0.00071 26.1 2.5 26 225-250 7-32 (69)
13 d2fd5a1 a.4.1.9 (A:1-76) Proba 31.4 13 0.00094 25.7 2.5 26 225-250 10-35 (76)
14 d2vkva1 a.4.1.9 (A:6-67) Tetra 24.2 14 0.00099 24.7 1.4 25 226-250 3-27 (62)
15 d1t56a1 a.4.1.9 (A:22-94) Ethr 24.1 19 0.0014 24.5 2.3 25 226-250 7-31 (73)
16 d1zela1 a.4.5.83 (A:1-82) Hypo 21.4 19 0.0014 24.7 1.7 27 214-242 35-62 (82)
17 d2d6ya1 a.4.1.9 (A:7-74) Putat 20.2 29 0.0021 23.4 2.5 26 225-250 5-30 (68)
No 1
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=9.8e-88 Score=662.88 Aligned_cols=277 Identities=28% Similarity=0.510 Sum_probs=252.2
Q ss_pred CCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhcc-----CCCCC
Q 014577 96 PFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVK-----KHTSP 170 (422)
Q Consensus 96 ~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~-----~~~~~ 170 (422)
.|++||.+|+++|++||+++ +.+|...||.|+ ..+||+|||||+|||||+|+|++.+........ ....+
T Consensus 15 ~W~pGe~~A~~~L~~Fl~~~--l~~Y~~~Rn~p~---~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~~~~~~~ 89 (300)
T d1u3da1 15 AWSPGWSNGDKALTTFINGP--LLEYSKNRRKAD---SATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEES 89 (300)
T ss_dssp HCCCSHHHHHHHHHHHHTTG--GGGTTTTTTCSS---STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHhh--HHHHhhhcCCCC---ccCCccccHHHcCCCCCHHHHHHHHHHHHHhhhhhcccccccc
Confidence 38899999999999999865 999999999987 468999999999999999999999865432110 01123
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcccchHHHHHHH
Q 014577 171 PVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVA 250 (422)
Q Consensus 171 ~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vA 250 (422)
.+.|++||+||||++++++++|........+....++|+.|++.+++|++|+||+||||||||||++|||||||+||+||
T Consensus 90 ~~~fi~eL~wRef~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~G~TG~p~vDA~mr~L~~tG~mhnr~Rm~va 169 (300)
T d1u3da1 90 VNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 169 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhccccccCHHHHHHHHhhcccchHHHHHHHHHHhhchhHHHHHHHHH
Confidence 56799999999999999998887776666666778899999999999999999999999999999999999999999999
Q ss_pred HHhhhccCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhhhhcccccCCCC
Q 014577 251 CFLTRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPK 329 (422)
Q Consensus 251 sFLtkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p~ 329 (422)
||||+ +|+|||+.|++||+++|||||+++|++||||+| +|+++.+|+|||||++|+++|||+|+|||+|||||+++|+
T Consensus 170 Sfl~~-~L~i~W~~ga~~f~~~l~D~d~a~n~~~wq~~ag~g~~~~~~~ri~np~~q~~~~Dp~g~fir~wvPEL~~~p~ 248 (300)
T d1u3da1 170 SFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPT 248 (300)
T ss_dssp HHHHH-TSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCH
T ss_pred HHHHH-HcccchhhHHHHHHHHHhccchhhHHHHHHHHHhcccchhhccccccHHHHHHHhcCcchHHHHhChhhhcCCH
Confidence 99999 999999999999999999999999999999999 5677889999999999999999999999999999999999
Q ss_pred CcccCCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 014577 330 EYIYEPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEAYAL 378 (422)
Q Consensus 330 ~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~ 378 (422)
++||+||++|..+|..+||.+|.+||.|||||+++|++|+++++..++.
T Consensus 249 ~~ih~Pw~~~~~~~~~~~~~~g~~Yp~pivd~~~~~~r~~~~~~~~~~~ 297 (300)
T d1u3da1 249 DWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 297 (300)
T ss_dssp HHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877766543
No 2
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=100.00 E-value=3.5e-86 Score=645.57 Aligned_cols=271 Identities=31% Similarity=0.573 Sum_probs=242.7
Q ss_pred CCCCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhccCCCCChHH
Q 014577 94 LSPFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVS 173 (422)
Q Consensus 94 ~~~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~ 173 (422)
...|+|||++|+++|++||...+.+..|+..||.+.. .++||+|||||+|||||||+|++++.+..... ....+.+.
T Consensus 5 ~~~f~gGe~~Al~~L~~Fl~~~~~l~~Y~~~Rn~~~~--~~~~S~LSPyL~~G~LS~rev~~~~~~~~~~~-~~~~~~~~ 81 (279)
T d1np7a1 5 VLAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVG--ADYSSKFSPWLALGCLSPRFIYQEVKRYEQER-VSNDSTHW 81 (279)
T ss_dssp SCCCCCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSS--STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT-CCSHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHhcccchhhhhHhcCCCCC--CCCccccCHHHcCCccCHHHHHHHHHHHhhcc-cccchHHH
Confidence 3469999999999999999654458999999986542 57899999999999999999999987765432 22345678
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 014577 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253 (422)
Q Consensus 174 f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFL 253 (422)
|++||+|||||++++.++|+............++|..+++.+++|++|+||+||||||||||++|||||||+||||||||
T Consensus 82 ~~~~l~WRef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDAamr~L~~tG~~Hn~~Rm~vasfl 161 (279)
T d1np7a1 82 LIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFL 161 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhcchhhhhccccchhhhccccccccchHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 99999999999999987776555455556678899999999999999999999999999999999999999999999999
Q ss_pred hhccCccCChHHHHHHHHhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchhhhhcccccCCCCCccc
Q 014577 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333 (422)
Q Consensus 254 tkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p~~~ih 333 (422)
|+ +|+|||+.|++||+++|||||+|+|++||||+||++++..++|+|||++|+++|||+|+|||+|||||++||+++||
T Consensus 162 ~~-~l~i~W~~g~~~f~~~liD~d~a~n~~~wq~~ag~~~~~~~~r~~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih 240 (279)
T d1np7a1 162 CK-NLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIH 240 (279)
T ss_dssp HH-TTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTTSCCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGG
T ss_pred Hh-cceeccccchHHHHHHHHhcChhhhhHHhhhhhhhccccccccccCCcchHhhcCCCHHHHHHHhHhhhcCCHHhhc
Confidence 99 99999999999999999999999999999999975455555799999999999999999999999999999999999
Q ss_pred CCCCCChhHHhhhccccCCCCCCCCCChHHHHHHH
Q 014577 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKEC 368 (422)
Q Consensus 334 ~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a 368 (422)
+||++|..+|+++||.+|.|||+|||||+++|+++
T Consensus 241 ~pw~~~~~~~~~~~~~~~~~YP~Pivd~~~~~~~~ 275 (279)
T d1np7a1 241 QPWLLSATEQKQWGVQLGVDYPRPCVNFHQSVEAR 275 (279)
T ss_dssp CGGGCCHHHHHHTTCCBTTTBCCCSSCHHHHHHHH
T ss_pred ChhhCCHHHHHHcCCCCCCCCCcccCCHHHHHHHH
Confidence 99999999999999999999999999999988644
No 3
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.7e-84 Score=629.08 Aligned_cols=265 Identities=31% Similarity=0.587 Sum_probs=238.2
Q ss_pred CccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhccCCCCChHHHHHH
Q 014577 98 RGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177 (422)
Q Consensus 98 ~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~f~~e 177 (422)
||||.+|+++|++||+++ +.+|+..||.|+ .++||+|||||+|||||||+|++++.+...... ...+...|++|
T Consensus 1 P~Ge~aAl~~L~~Fl~~~--l~~Y~~~Rn~p~---~~~tSrLSPyL~~G~ISprev~~~v~~~~~~~~-~~~~~~~~l~e 74 (269)
T d1dnpa1 1 PVEEKAAIAQLRQFCQNG--AGEYEQQRDFPA---VEGTSRLSASLATGGLSPRQCLHRLLAEQPQAL-DGGAGSVWLNE 74 (269)
T ss_dssp CCSHHHHHHHHHHHHHTH--HHHHHHHTTCTT---SCCSCCCHHHHHHTSSCHHHHHHHHHHHCGGGG-GTSTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhH--HHHHhHhcCCCC---CCCCccCcHHHcCCcCCHHHHHHHHHHhhhhcc-ccccchhHHhh
Confidence 689999999999999875 999999999987 579999999999999999999999987543221 23456789999
Q ss_pred HHHHHHHHHHHHcCCCccccc-cccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 014577 178 LLWRDFFYTVAFGTPNFDRMK-GNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRG 256 (422)
Q Consensus 178 L~WRef~~~~~~~~p~~~~~~-~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg 256 (422)
|+||||+++.++++|.+.... .......++|+.+++.+++|++|+||+||||||||||++|||||||+||+||||||+
T Consensus 75 L~wRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~Tg~p~vDAamr~L~~tG~mhn~~Rm~~as~l~~- 153 (269)
T d1dnpa1 75 LIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK- 153 (269)
T ss_dssp HHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-
T ss_pred hhhhhhhhhhhhccchhhhhccccccccccccccChHHHhhccCCCcCchHHHHHHHHHhccCchhHHHHHHHHHHHHH-
Confidence 999999999998776554332 334456788999999999999999999999999999999999999999999999999
Q ss_pred cCccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhhhhcccccCCCCCcccCC
Q 014577 257 DMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIYEP 335 (422)
Q Consensus 257 ~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p~~~ih~P 335 (422)
.|+|||+.|++||+++|||||+++|++||||+| +|+++.+|+|||||++|+++|||+|+|||+|||||+++|+++||+|
T Consensus 154 ~l~i~W~~g~~~f~~~llD~d~~~n~~~wq~~ag~g~~~~~~~r~~np~~q~~~~Dp~g~~ir~w~pel~~~p~~~ih~p 233 (269)
T d1dnpa1 154 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEP 233 (269)
T ss_dssp TSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSH
T ss_pred hcccccchhHHHHHHHHHhcCcccCHHHHHhhhccCCCccccccccchHHHHHHhCCCcchHHHhChhhccCCHHhcCCh
Confidence 999999999999999999999999999999999 6788899999999999999999999999999999999999999999
Q ss_pred CCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 014577 336 WTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375 (422)
Q Consensus 336 w~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~ 375 (422)
|+++. .|.++.+||+|||||+++|++|+++|+.+
T Consensus 234 ~~~~~------~~~~~~~Yp~pivd~~~~r~~~~~~~~~~ 267 (269)
T d1dnpa1 234 WKWAQ------KAGVTLDYPQPIVEHKEARVQTLAAYEAA 267 (269)
T ss_dssp HHHHH------TTTCCCSSCCCSSCHHHHHHHHHHHHHHH
T ss_pred hhcch------hhCcCCCCccccCCHHHHHHHHHHHHHHh
Confidence 98653 35678999999999999999999877654
No 4
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=100.00 E-value=2.5e-83 Score=622.43 Aligned_cols=265 Identities=32% Similarity=0.628 Sum_probs=237.9
Q ss_pred CCCccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhccC--CCCChHH
Q 014577 96 PFRGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKK--HTSPPVS 173 (422)
Q Consensus 96 ~~~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~--~~~~~~~ 173 (422)
++.|||++|+++|++||+.+ +.+|+..||.|. .++||+|||||+|||||+|+|++++.+....... ...+...
T Consensus 1 P~~pGE~~Al~~L~~Fl~~~--l~~Y~~~Rn~p~---~~~tS~LSPyL~fG~IS~R~v~~~~~~~~~~~~~~~~~~~~~~ 75 (271)
T d1owla1 1 PVEPGETAAIARLQEFCDRA--IADYDPQRNFPA---EAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRV 75 (271)
T ss_dssp SSCSSHHHHHHHHHHHHHTG--GGGHHHHTTCTT---SCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHH--HHhhccccCCCC---CCCCccCCHHHccCccCHHHHHHHHHHhhhhccccccccchHH
Confidence 36789999999999999865 999999999887 5789999999999999999999998865432110 1123567
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 014577 174 LVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFL 253 (422)
Q Consensus 174 f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFL 253 (422)
|++||+|||||++.++++|.......++.+..++|+.+++.|++|++|+||+||||||||||++|||||||+||+|||||
T Consensus 76 f~~eL~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~as~l 155 (271)
T d1owla1 76 WQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFL 155 (271)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGSCCSTGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhhhhhhhcccchhhcccccchhhHHhhhcccccCchHHHHHHHhhcccCchhHHHHHHHHHHH
Confidence 99999999999999998887776666777788999999999999999999999999999999999999999999999999
Q ss_pred hhccCccCChHHHHHHHHhccccccCCcccchhhhhcccCCCCcccccCcccccccCCCCcchhhhhcccccCCCCCccc
Q 014577 254 TRGDMFVHWEKGRDVFDRLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMPKEYIY 333 (422)
Q Consensus 254 tkg~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p~~~ih 333 (422)
|+ +|+|||+.|++||+++|||||+|+|++||||+||++.+..+||+|||++|+++|||+|+|||||||||++||+++||
T Consensus 156 ~~-~l~i~W~~g~~~f~~~liD~d~a~n~~~wqw~ag~g~d~~~~r~~np~~q~~k~Dp~g~yir~w~Pel~~~~~~~i~ 234 (271)
T d1owla1 156 TK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLI 234 (271)
T ss_dssp HH-TSCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCSSSCCCCCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHH
T ss_pred Hh-hcccchhhhHHHHHHHHHhcCCCCCccceeeeeccCCCccccccchhhhhhhhcccHHHHHHHhChhhccCChHHhc
Confidence 99 99999999999999999999999999999999976556667999999999999999999999999999999999999
Q ss_pred CCCCCChhHHhhhccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 014577 334 EPWTAPLTIQTRAKCIIGRDYPAPVVSHDSASKECKRKLGEA 375 (422)
Q Consensus 334 ~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~ 375 (422)
+||..+. +|.+||+|||||+++|++|+++|++.
T Consensus 235 ~~~~~~~---------~~~~Yp~pivd~~~~~~~~~~~~~~~ 267 (271)
T d1owla1 235 SGEITPI---------ERRGYPAPIVNHNLRQKQFKALYNQL 267 (271)
T ss_dssp HTCCCHH---------HHTTSCCCSSCHHHHHHHHHHHHHHH
T ss_pred CcccCcc---------ccCCCCccccCHHHHHHHHHHHHHHH
Confidence 9998653 35799999999999999999766654
No 5
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.3e-68 Score=507.62 Aligned_cols=219 Identities=28% Similarity=0.545 Sum_probs=201.8
Q ss_pred CccHHHHHHHHHHHhcCchhhhccCCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhccCCCCChHHHHHH
Q 014577 98 RGGESEALKKLRESISDKEWVANFEKPKGDPSAYLKPATTVLSPYLKFGCLSSRYFYQCLTDVYQNVKKHTSPPVSLVGQ 177 (422)
Q Consensus 98 ~gGe~~A~~~L~~Fl~~~~~l~~Y~~~r~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~f~~e 177 (422)
++||.+|+++|++||+.+ +.+|+..||.|. .++||+|||||+||+||||+|++++.... ..+.+.|++|
T Consensus 5 ~pGe~~Al~~L~~Fl~~~--l~~Y~~~Rn~p~---~~~tS~LSPyL~~G~LS~r~v~~~~~~~~------~~~~~~~~~e 73 (234)
T d2j07a1 5 EPGEEAALAGLRAFLEAK--LPRYAEERDRLD---GEGGSRLSPYFALGVLSPRLAAWEAERRG------GEGARKWVAE 73 (234)
T ss_dssp CCSHHHHHHHHHHHHHHT--GGGHHHHTTCTT---CTTSCCCHHHHHTTSSCHHHHHHHHHHHC------SHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH--HHHHhHhcCCCC---CCCCcccCHHHccCCCcHHHHHHHHhhhc------chhhHHHHHH
Confidence 579999999999999865 999999999987 57899999999999999999999886532 2346789999
Q ss_pred HHHHHHHHHHHHcCCCccccccccccCCCCCCCCHHHHHHHHcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHhhhcc
Q 014577 178 LLWRDFFYTVAFGTPNFDRMKGNRICKQIPWSNDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 257 (422)
Q Consensus 178 L~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMRqL~~tGwmHnr~Rm~vAsFLtkg~ 257 (422)
|+|||||++.+++.+........+......|..+++.+++|++|+||+||||||||||++||||||++||+|||||++ .
T Consensus 74 l~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Tg~~~~da~mr~L~~tG~~Hn~~Rm~~a~~~~~-~ 152 (234)
T d2j07a1 74 LLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-H 152 (234)
T ss_dssp HHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccccccccCHHHHHHhhccccCchHHHHHHHHHHhhchHhHHHHHHHHHHHHh-h
Confidence 999999999999887766655566667788999999999999999999999999999999999999999999999999 9
Q ss_pred CccCChHHHHHHHHhccccccCCcccchhhhh-cccCCCCcccccCcccccccCCCCcchhhhhcccccCCC
Q 014577 258 MFVHWEKGRDVFDRLLIDSDWAINNGNWLWLS-CSSFFYQYNRIYSPVSFGKKYDPNGNYIRHFLPVLKDMP 328 (422)
Q Consensus 258 L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~a-~g~~~~~~~RifnP~~q~~k~Dp~G~yIr~wvPEL~~~p 328 (422)
|+|||+.|++||+++|||||+|+|++||||+| +|++..||+|+|||++|+++|||+|+|||||||||+++|
T Consensus 153 l~~~w~~~~~~f~~~liD~d~~~n~~~w~~~ag~g~~~~~~~r~~n~~~~~~k~Dp~g~yi~~w~Pel~~~~ 224 (234)
T d2j07a1 153 LLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA 224 (234)
T ss_dssp SCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHHHHHHSTTSHHHHHHCTTCSSSS
T ss_pred ccccHHHHHHHHHHHhhcCCcccchhhhhhhhccCCCCCCcccccCHHHHHHHhCCCchHHHHHCcccccCC
Confidence 99999999999999999999999999999999 467789999999999999999999999999999999987
No 6
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=98.84 E-value=1.6e-09 Score=97.85 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=58.9
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCCCCCCCCCCCCCCCCCCC-----CCCCccCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPLWASSPLPVSLSSLPPVG-----DVGYFEIS 76 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~~~~~p~p~~~~~~~~~~-----~~~~~~~~ 76 (422)
.|++.|++.||.++.|+|++|++|++|.++.| ++|+|||||+|+|.+...+ .|.+.+. ..+..+ ........
T Consensus 110 ~i~~~~~~~~i~~~~~~~~~L~~p~~v~~~~g-~~~~vFTpF~k~~~~~~~~-~p~~~p~-~~~~~~~~~~~~~~~~~~~ 186 (202)
T d1owla2 110 QVAAALKTAGIRAVQLWDQLLHSPDQILSGSG-NPYSVYGPFWKNWQAQPKP-TPVATPT-ELVDLSPEQLTAIAPLLLS 186 (202)
T ss_dssp HHHHHHHHTTCEEEEECCSSSSCTTTCCCTTS-CCCSSHHHHHHHHHHSCCC-CCCCCCC-SCCCCCHHHHHHHGGGCCS
T ss_pred HHhhhhhhccccccccccccccCcccccCCCC-CchhhhHHHHHHHHhcCCC-CCCCCcc-ccccCChhhcCCccccccc
Confidence 57889999999999999999999999999877 9999999999999765422 2222211 111111 01112345
Q ss_pred CCCChhhcCC
Q 014577 77 EVPTVEELGY 86 (422)
Q Consensus 77 ~~p~l~~lg~ 86 (422)
.+|++++||+
T Consensus 187 ~~Ps~~~lg~ 196 (202)
T d1owla2 187 ELPTLKQLGF 196 (202)
T ss_dssp SCCCTGGGTC
T ss_pred CCCCHHHhCC
Confidence 6889999987
No 7
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.69 E-value=7.7e-09 Score=92.10 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPL 51 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~ 51 (422)
+|++.|++.||+++.|+|++|++|++|.+++| ++|+|||||+|+|.+..
T Consensus 109 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g-~~y~vFTpF~k~~~~~~ 157 (185)
T d1u3da2 109 RAKDVLTAQGIAVRSFNADLLYEPWEVTDELG-RPFSMFAAFWERCLSMP 157 (185)
T ss_dssp HHHHHHHTTTCEEEEECCSCSSCGGGCCCSSS-CCCSSHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCceeecCCceecCccccccCCC-CCCcccHHHHHHHHhCc
Confidence 68889999999999999999999999999887 99999999999986653
No 8
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=98.48 E-value=9.9e-08 Score=85.76 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcCC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQP 50 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~ 50 (422)
+|.+.|++.||+++.|+|++|++|++|.++.| ++|+|||||+|+|.+.
T Consensus 120 ~v~~~l~~~~i~~~~~~~~~L~~p~~l~~~~~-~~~~vFTpFrk~~e~~ 167 (204)
T d1np7a2 120 NLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQ-DLPDLFTKFRKDIEKK 167 (204)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSCGGGSSSCGG-GCCSSHHHHHHHHHTT
T ss_pred HHhhhhccceeeeEeccCccccChhhccCCCC-CCCccchHHHHHHHhc
Confidence 57889999999999999999999999999987 9999999999999764
No 9
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=98.27 E-value=2.4e-07 Score=83.19 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCeEEeecCCeeecCcccccccCCCCCccchhHHHHhcC
Q 014577 2 KVKDYASTAGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQ 49 (422)
Q Consensus 2 ~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~ 49 (422)
+|++.| .||.++.|+|++|++|++|.++.| ++|+|||||+|+|.+
T Consensus 115 ~v~~~l--~~i~~~~~~~~~L~~p~~v~~~~g-~~y~VFTpF~k~~~~ 159 (200)
T d1dnpa2 115 EVERAL--RNVVCEGFDDSVILPPGAVMTGNH-EMYKVFTPFKNAWLK 159 (200)
T ss_dssp HHHHHC--TTSEEEEECCSSSSCTTSSCCTTS-CCCSSHHHHHHHHHH
T ss_pred HHHHHh--hhhcccccCceeeccccccccCCC-CCCccCCHHHHHHHH
Confidence 466666 489999999999999999999887 999999999998754
No 10
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=97.47 E-value=3.6e-05 Score=66.87 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=30.1
Q ss_pred ecCCeeecCcccccccCCCCCccchhHHHHhcCCC
Q 014577 17 PVSHTLFNPADIIQKNGGKPPLTYQSFLKLAGQPL 51 (422)
Q Consensus 17 ~~~~~L~~p~~i~~~~g~~~y~vft~F~k~~~~~~ 51 (422)
+++++|++|++|.++.| ++|+|||||+|+|++..
T Consensus 113 ~~~~~l~~p~~v~~~~~-~~y~VFTpF~k~~~~~~ 146 (170)
T d2j07a2 113 VPLHLLPAPHLLPPDLP-RAYRVYTPFSRLYRGAA 146 (170)
T ss_dssp SCEEEECCCCSSCTTCS-SCCSSHHHHHTTCCCCC
T ss_pred cCceeecccCeeeCCcC-CCCCccCHHHHHHhccC
Confidence 67788999999999877 99999999999997654
No 11
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=43.20 E-value=2 Score=32.90 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=14.8
Q ss_pred cccCCCCcchhhhhcccc
Q 014577 307 GKKYDPNGNYIRHFLPVL 324 (422)
Q Consensus 307 ~~k~Dp~G~yIr~wvPEL 324 (422)
.++|||+|.|.++|--++
T Consensus 83 ~~KYDP~g~y~~k~~~~~ 100 (101)
T d1n8va_ 83 TAKYDPTGNWRKKYEDRA 100 (101)
T ss_dssp HHHHCTTCSSHHHHHHHH
T ss_pred HHHHCcCchHHHHHHHHh
Confidence 468999999999986654
No 12
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=36.39 E-value=9.7 Score=26.12 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHhcccchHHHHHHH
Q 014577 225 YPWIDAIMVQLRKWGWMHHLARHCVA 250 (422)
Q Consensus 225 ~P~VDAaMRqL~~tGwmHnr~Rm~vA 250 (422)
--|++|+++.|.+.||-.-.++.++.
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~ 32 (69)
T d2fq4a1 7 KAILSASYELLLESGFKAVTVDKIAE 32 (69)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 35899999999999999999999885
No 13
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.42 E-value=13 Score=25.70 Aligned_cols=26 Identities=12% Similarity=0.030 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHhcccchHHHHHHH
Q 014577 225 YPWIDAIMVQLRKWGWMHHLARHCVA 250 (422)
Q Consensus 225 ~P~VDAaMRqL~~tGwmHnr~Rm~vA 250 (422)
--|+||+++.+.+.||-+-.+++++.
T Consensus 10 ~~Il~aa~~l~~~~G~~~~si~~Ia~ 35 (76)
T d2fd5a1 10 ARILGAATQALLERGAVEPSVGEVMG 35 (76)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHH
Confidence 45999999999999999999999885
No 14
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=24.15 E-value=14 Score=24.71 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHH
Q 014577 226 PWIDAIMVQLRKWGWMHHLARHCVA 250 (422)
Q Consensus 226 P~VDAaMRqL~~tGwmHnr~Rm~vA 250 (422)
-|+|||++.+.+.||-.-.+|++..
T Consensus 3 ~Il~aA~~l~~~~G~~~~s~~~Ia~ 27 (62)
T d2vkva1 3 KVINSALELGNEVGIEGLTTRKLAQ 27 (62)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHH
Confidence 4899999999999999999999875
No 15
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.10 E-value=19 Score=24.46 Aligned_cols=25 Identities=4% Similarity=-0.133 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHH
Q 014577 226 PWIDAIMVQLRKWGWMHHLARHCVA 250 (422)
Q Consensus 226 P~VDAaMRqL~~tGwmHnr~Rm~vA 250 (422)
-|+|||++.+.+.||-.-.+|.+..
T Consensus 7 ~Il~aa~~l~~~~G~~~~t~~~Ia~ 31 (73)
T d1t56a1 7 AILATAENLLEDRPLADISVDDLAK 31 (73)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHH
Confidence 4899999999999999999998875
No 16
>d1zela1 a.4.5.83 (A:1-82) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.42 E-value=19 Score=24.71 Aligned_cols=27 Identities=37% Similarity=0.683 Sum_probs=18.7
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHHhcccc
Q 014577 214 LLAAWREARTG-YPWIDAIMVQLRKWGWMH 242 (422)
Q Consensus 214 ~~~aW~~G~TG-~P~VDAaMRqL~~tGwmH 242 (422)
.-++..+.-.| .| |.++|+|+.-||+-
T Consensus 35 ltqrlteagcgrdp--dsairelrrigwlv 62 (82)
T d1zela1 35 LTQRLTEAGCGRDP--DSAIRELRRIGWLV 62 (82)
T ss_dssp HHHHHHHTTCCCCH--HHHHHHHHHHTSEE
T ss_pred HHHHHHhcccCCCc--hHHHHHHHHhceeE
Confidence 34455444333 44 88999999999984
No 17
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.16 E-value=29 Score=23.38 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhcccchHHHHHHH
Q 014577 225 YPWIDAIMVQLRKWGWMHHLARHCVA 250 (422)
Q Consensus 225 ~P~VDAaMRqL~~tGwmHnr~Rm~vA 250 (422)
--|+||+++.+.+.||-.-.+|.++.
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~ 30 (68)
T d2d6ya1 5 ARIFEAAVAEFARHGIAGARIDRIAA 30 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHH
Confidence 35899999999999999999999875
Done!