BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014578
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 155/305 (50%), Gaps = 60/305 (19%)
Query: 123 QPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSK--LLLAARKIRKATSTDFLISL 180
+P P+ I+C I R++ ++ L + K LLA RK +K+ ++++LIS+
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 181 VGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVS---LKG 237
D SR ++Y+GKLRSN +GTKFT+YD+ + P++ S L+
Sbjct: 84 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDN----------------GVNPQKASSSTLES 127
Query: 238 SSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXX 297
+ +A + YE NVL +GPR+M S I G N E++
Sbjct: 128 GTLRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVSIR 169
Query: 298 XXXXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA 357
L + + + +E L+NK P W++ Q + LNF GRVT A
Sbjct: 170 PRNEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQA 217
Query: 358 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDT 417
SVKNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+
Sbjct: 218 SVKNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDS 268
Query: 418 KPACE 422
K ACE
Sbjct: 269 KLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 153/306 (50%), Gaps = 62/306 (20%)
Query: 123 QPGPRDAPIQCYIRRERPTG------TYRLYLGLSPALSGDMSKLLLAARKIRKATSTDF 176
+P P+ I+C I R++ TY L+L LLA RK +K+ ++++
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDG----KKVFLLAGRKRKKSKTSNY 71
Query: 177 LISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLK 236
LIS+ D SR ++Y+GKLRSN +GTKFT+YD+ A S +L+
Sbjct: 72 LISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLE 118
Query: 237 GSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXX 296
+ +A + YE NVL +GPR+M S I G N E++
Sbjct: 119 SGTLRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVCI 160
Query: 297 XXXXXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTV 356
L + + + +E L+NK P W++ Q + LNF GRVT
Sbjct: 161 RPRNEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQ 208
Query: 357 ASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 416
ASVKNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD
Sbjct: 209 ASVKNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFD 259
Query: 417 TKPACE 422
+K ACE
Sbjct: 260 SKLACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 151/301 (50%), Gaps = 56/301 (18%)
Query: 123 QPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVG 182
+P P+ ++C + R++ +Y L + LLA RK +++ + ++LIS+
Sbjct: 31 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDP 90
Query: 183 DDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNY 242
+ SR ++GKLRSN LG +FT++D+ +N S R+
Sbjct: 91 TNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ--------------- 135
Query: 243 SVATISYELNVLRTRGPRRMQCTMHSIP-ISAIQEGGTAPTPIEFTNCCEEQIXXXXXXX 301
+A + YE NVL RGPRRM IP +SA E PI N +
Sbjct: 136 ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENE----RVPIRPRNASD---------- 178
Query: 302 XXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKN 361
LV + + +L +E L NK P W++ + LNF+GRVT ASVKN
Sbjct: 179 ----GLLVRWQNKTLESLIE----------LHNKPPVWNDDSGSYTLNFQGRVTQASVKN 224
Query: 362 FQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPAC 421
FQ+V A +P + ++LQFG++ +D FT+DYRYPL ALQAFAI LSSFD K AC
Sbjct: 225 FQIVHADDP---------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLAC 275
Query: 422 E 422
E
Sbjct: 276 E 276
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 153/306 (50%), Gaps = 62/306 (20%)
Query: 123 QPGPRDAPIQCYIRRERPTG------TYRLYLGLSPALSGDMSKLLLAARKIRKATSTDF 176
+P P+ I+C I R++ TY L+L LLA RK +K+ ++++
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDG----KKVFLLAGRKRKKSKTSNY 71
Query: 177 LISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLK 236
LIS+ D SR ++Y+GKLRSN +GTKFT+YD+ A S +L+
Sbjct: 72 LISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLE 118
Query: 237 GSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXX 296
+ +A + YE NVL +GPR+M S I G N E++
Sbjct: 119 SGTLRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVCI 160
Query: 297 XXXXXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTV 356
L + + + +E L+NK P W++ + + LNF GRVT
Sbjct: 161 RPRNEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTESYVLNFHGRVTQ 208
Query: 357 ASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 416
ASVKNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD
Sbjct: 209 ASVKNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFD 259
Query: 417 TKPACE 422
+K ACE
Sbjct: 260 SKLACE 265
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 146/294 (49%), Gaps = 54/294 (18%)
Query: 123 QPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVG 182
+P P+ ++C + R++ +Y L + LLA RK +++ + ++LIS+
Sbjct: 7 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDP 66
Query: 183 DDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNY 242
+ SR ++GKLRSN LG +FT++D+ +N S R+
Sbjct: 67 TNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ--------------- 111
Query: 243 SVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXXXXXXX 302
+A + YE NVL RGPRRM + + SA E PI N +
Sbjct: 112 ELAAVIYETNVLGFRGPRRMTVIIPGM--SAENER----VPIRPRNASD----------- 154
Query: 303 XXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNF 362
LV + + +L +E L NK P W++ + LNF+GRVT ASVKNF
Sbjct: 155 ---GLLVRWQNKTLESLIE----------LHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 201
Query: 363 QLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 416
Q+V A +P + ++LQFG++ +D FT+DYRYPL ALQAFAI LSSFD
Sbjct: 202 QIVHADDP---------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
>pdb|3VA8|A Chain A, Crystal Structure Of Enolase Fg03645.1 (Target Efi-502278)
From Gibberella Zeae Ph-1 Complexed With Magnesium,
Formate And Sulfate
Length = 445
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 62 NMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSW 98
++PP +L D +Q I + W R AS+C +W
Sbjct: 298 HLPPSILQDAVQVILSDHHFWGGLRKSQTLASICATW 334
>pdb|3BBO|6 Chain 6, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 104
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 1 MALKNIVKEMRDGIGNISRRGSERR-CSENGKHNMRRRGRSYIAPEG 46
M +++ VK+M + + RRG CS N KH R+ G S A EG
Sbjct: 1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEG 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,482,355
Number of Sequences: 62578
Number of extensions: 424156
Number of successful extensions: 675
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 14
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)