Query 014578
Match_columns 422
No_of_seqs 227 out of 361
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 2E-127 3E-132 951.7 27.3 354 1-422 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 3.7E-84 8E-89 624.2 16.5 245 124-416 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 3.6E-19 7.8E-24 184.1 4.3 78 328-417 485-562 (565)
4 PF12043 DUF3527: Domain of un 98.2 0.00021 4.5E-09 73.2 19.4 74 326-417 271-344 (346)
5 PF12937 F-box-like: F-box-lik 97.8 8.1E-06 1.8E-10 59.5 0.8 36 60-103 1-36 (47)
6 PF00646 F-box: F-box domain; 97.6 8.8E-06 1.9E-10 58.9 -0.6 39 59-105 2-40 (48)
7 PLN03215 ascorbic acid mannose 97.4 7.1E-05 1.5E-09 77.4 1.8 40 59-105 3-42 (373)
8 smart00256 FBOX A Receptor for 97.2 6.4E-05 1.4E-09 52.0 -0.6 34 63-104 1-34 (41)
9 KOG2997 F-box protein FBX9 [Ge 88.8 0.19 4.1E-06 51.7 1.2 43 57-102 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 60.1 2.3 4.9E-05 44.2 -0.8 67 60-134 98-167 (419)
11 PF11038 DGF-1_5: Dispersed ge 38.7 57 0.0012 32.1 5.0 105 80-214 15-126 (278)
12 PF04525 Tub_2: Tubby C 2; In 28.2 1.7E+02 0.0037 27.0 6.3 79 128-210 61-144 (187)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1.6e-127 Score=951.69 Aligned_cols=354 Identities=50% Similarity=0.800 Sum_probs=306.0
Q ss_pred CchhhHHHHhccccccccccccccccccCCCcccccCCccccCCCCCCCCcccccccCccCCCCHHHHHHHHHHHHhcCC
Q 014578 1 MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQT 80 (422)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~lp~ell~~i~~r~e~se~ 80 (422)
|+++++++++++.. +++++..+ +|++. +...++.... .....+.|++||||||+|+|+|+|++|+
T Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~------~~~~~-~~~~~~~~~~--s~~~~~~~~~l~~~~L~d~~~r~eese~ 65 (355)
T KOG2502|consen 1 MGEDGPVRDPEDKS------SFRAPQGS------GTKGP-EDKSEDSGFP--SPSDQSLWAALPPELLSDVLKRDEESED 65 (355)
T ss_pred CCccCccCCCCccc------chhccccc------ccccC-CCccCCcCCc--cccccchhhcCCHhHHHHHhhhcccccc
Confidence 78899999998776 55544332 12211 1112211111 1112289999999999999999999999
Q ss_pred CCCCccceeeccccChhHHHHhHHHhcCccccCcccccccccCCCCCCCceEEEEEEecCCceEEEEeccCCCcCC-CCC
Q 014578 81 SWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSG-DMS 159 (422)
Q Consensus 81 ~wp~r~~vvaca~vc~~wr~~~~eiv~~pe~~gk~tfp~sLkqPgPrd~~iQC~I~RdK~~~tY~LYL~l~~~~~~-e~g 159 (422)
.||+|++||+||+||+.||++++|||++||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.++++. |++
T Consensus 66 ~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~ 145 (355)
T KOG2502|consen 66 TWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNK 145 (355)
T ss_pred ccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887654 678
Q ss_pred eeEEeeeecccCCceeEEEEccCCCCcCCCCceeeeeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCC
Q 014578 160 KLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS 239 (422)
Q Consensus 160 KfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~ 239 (422)
||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|.. .+|+++ ++|+
T Consensus 146 kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~----------~~r~~~------~~~~ 209 (355)
T KOG2502|consen 146 KFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN----------PSRRFN------KVPS 209 (355)
T ss_pred eeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC----------cccccc------cCCc
Confidence 999999999999999999999999999999999999999999999999999732 234444 5899
Q ss_pred CceeEEEEEEeecccCCCCCeeeEEeeccCcchhhcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 014578 240 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGP 319 (422)
Q Consensus 240 ~~~ela~VsYE~NVLg~rGPRrM~~im~~IP~s~i~~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~s~~~~~~ 319 (422)
++|+||+|+||+||||+||||||+|+||+||.++ ++|++|.|++..+.. .+ .+.
T Consensus 210 ~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l----~r~--------------- 263 (355)
T KOG2502|consen 210 GRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL----FRS--------------- 263 (355)
T ss_pred ccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh----hhc---------------
Confidence 9999999999999999999999999999999887 899999886542211 01 010
Q ss_pred CCCCCCCCCceEeecCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEcc
Q 014578 320 LESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYR 399 (422)
Q Consensus 320 ~~~~~~~~~~l~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~ 399 (422)
.+..++++++|+||.|+|||++||||||||||||+||||||||||. .++++|||||||||||+|||||+
T Consensus 264 --~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------~~p~~iiLQFGrV~kD~FTmDYr 332 (355)
T KOG2502|consen 264 --QNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------LDPEYIILQFGRVGKDVFTMDYR 332 (355)
T ss_pred --cccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------CCCCEEEEEeeeeccceeeeccc
Confidence 1123689999999999999999999999999999999999999998 56799999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCcccCC
Q 014578 400 YPLSALQAFAICLSSFDTKPACE 422 (422)
Q Consensus 400 yPlS~~QAFaI~LssfdtKlACE 422 (422)
||||+||||||||||||+|||||
T Consensus 333 YPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 333 YPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred CccHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=3.7e-84 Score=624.17 Aligned_cols=245 Identities=53% Similarity=0.875 Sum_probs=182.2
Q ss_pred CCCCCCceEEEEEEecCCceEEEEeccCCCcCCCCCeeEEeeeecccCCceeEEEEccCCCCcCCCCceeeeeeeceeec
Q 014578 124 PGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGT 203 (422)
Q Consensus 124 PgPrd~~iQC~I~RdK~~~tY~LYL~l~~~~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLRSNFlGT 203 (422)
|||+|++|||+|+|||+|++|+||+.+...++.++|||||||||++++++||||||++++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 89999999999999999874433333222224578899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccCcchhhcCCCCCCCC
Q 014578 204 KFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTP 283 (422)
Q Consensus 204 kFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYE~NVLg~rGPRrM~~im~~IP~s~i~~gg~~p~q 283 (422)
+|||||+|++++.+. ..+|..+..++|||+|.||+||||+||||||+|+||+|+....++++..|.+
T Consensus 81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 999999997665432 1256677889999999999999999999999999999987777666665443
Q ss_pred cccccCCCCCCCCCCCCCCCCCC-CcccccCCCCCCCCCCCCCCCCceEeecCCCcccccccceEeccCCeeecccccee
Q 014578 284 IEFTNCCEEQIPSSPSPVSKGKK-PLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNF 362 (422)
Q Consensus 284 ~~~~~~~~e~f~~~~~~~~k~k~-~~~~~~s~~~~~~~~~~~~~~~~l~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNF 362 (422)
.. ...++ ...++ .....++.++|+||.|+||+++++|+|||+||||+||||||
T Consensus 148 p~----------------~~~~~~~~~~~----------~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNF 201 (246)
T PF01167_consen 148 PL----------------NQEKDSLLSRF----------QNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNF 201 (246)
T ss_dssp -S----------------S-CCCSHHHHH----------HCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEE
T ss_pred cc----------------ccccccccccc----------cccCCcceEEEecCCCcEeccCCeEEeccCCeEecccccee
Confidence 10 00111 11111 12246789999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCC
Q 014578 363 QLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 416 (422)
Q Consensus 363 QLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~Lssfd 416 (422)
|||++ ++++++|||||||++|+|+|||+|||||+|||||||||||
T Consensus 202 ql~~~---------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 202 QLVHP---------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp EEEBT---------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred EEEcc---------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 99998 7889999999999999999999999999999999999997
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.75 E-value=3.6e-19 Score=184.08 Aligned_cols=78 Identities=41% Similarity=0.735 Sum_probs=71.8
Q ss_pred CceEeecCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEccCCCCHHHH
Q 014578 328 DPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQA 407 (422)
Q Consensus 328 ~~l~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QA 407 (422)
.+.++.||+|.|||+.|-|+|||.||||+.|.||||+-.. .+-|||||+|..+.|++||+||||+.||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~------------gkQvmqFgRidg~aytldfqypfSa~Qa 552 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF------------GKQVMQFGRIDGPAYTLDFQYPFSAGQA 552 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec------------chhhheeccccCCcccCCCCCchHHHHH
Confidence 4469999999999999999999999999999999999754 4568999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 014578 408 FAICLSSFDT 417 (422)
Q Consensus 408 FaI~Lssfdt 417 (422)
||+||++.--
T Consensus 553 Favalanvtq 562 (565)
T KOG2503|consen 553 FAVALANVTQ 562 (565)
T ss_pred HHHHHhhhhh
Confidence 9999998643
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.15 E-value=0.00021 Score=73.24 Aligned_cols=74 Identities=20% Similarity=0.410 Sum_probs=54.9
Q ss_pred CCCceEeecCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEccCCCCHH
Q 014578 326 AGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSAL 405 (422)
Q Consensus 326 ~~~~l~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~ 405 (422)
-..+.||.|..- .+-..+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++
T Consensus 271 gC~L~VL~n~~~----------~~~~~~~~~~~~~~feLf~QG--------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~L 332 (346)
T PF12043_consen 271 GCPLRVLSNQSQ----------NSKKSSSSKESSHPFELFVQG--------SKEEDPAFSMVNVKEGLYSVEFHSSLSPL 332 (346)
T ss_pred CCCeEEeCCCCc----------cccccccccccCCceeeeecc--------cccCCCceEEEEccCCeEEEEecCcchHH
Confidence 346678877532 122345556677778987551 22333899999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 014578 406 QAFAICLSSFDT 417 (422)
Q Consensus 406 QAFaI~Lssfdt 417 (422)
|||+||++-.++
T Consensus 333 QAFSiciA~lh~ 344 (346)
T PF12043_consen 333 QAFSICIAVLHS 344 (346)
T ss_pred HHHHHhheeeec
Confidence 999999987654
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.76 E-value=8.1e-06 Score=59.49 Aligned_cols=36 Identities=28% Similarity=0.754 Sum_probs=30.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014578 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (422)
Q Consensus 60 w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (422)
|..||+|+|.+|+..++.. ++..|+.|||.|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHC
Confidence 7899999999999887443 68999999999999873
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.64 E-value=8.8e-06 Score=58.93 Aligned_cols=39 Identities=21% Similarity=0.535 Sum_probs=31.9
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHHH
Q 014578 59 QWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEI 105 (422)
Q Consensus 59 ~w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ei 105 (422)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|++++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 488999999999999997654 999999999999988654
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.37 E-value=7.1e-05 Score=77.43 Aligned_cols=40 Identities=30% Similarity=0.688 Sum_probs=37.1
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHHH
Q 014578 59 QWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEI 105 (422)
Q Consensus 59 ~w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ei 105 (422)
.|+.||+|||+.|..|+ |++-|++--++||++||..+...
T Consensus 3 ~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 3 DWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred ChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence 59999999999999999 99999999999999999977643
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.20 E-value=6.4e-05 Score=51.95 Aligned_cols=34 Identities=26% Similarity=0.752 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHH
Q 014578 63 MPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (422)
Q Consensus 63 lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (422)
||+|++.+|+.++ |. +++.+|+.||+.||.++++
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999998 44 7889999999999997743
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=88.80 E-value=0.19 Score=51.74 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=32.8
Q ss_pred cCccCC---CCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHh
Q 014578 57 QSQWAN---MPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVT 102 (422)
Q Consensus 57 ~~~w~~---lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ 102 (422)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+|||.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHH
Confidence 778866 99999999999995332 12355789999999876543
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=60.06 E-value=2.3 Score=44.21 Aligned_cols=67 Identities=21% Similarity=0.424 Sum_probs=48.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHH--HhcCccccCcccccccccCCCCCCC-ceEEE
Q 014578 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE--IIRTPEQCGLLSFPVSLKQPGPRDA-PIQCY 134 (422)
Q Consensus 60 w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e--iv~~pe~~gk~tfp~sLkqPgPrd~-~iQC~ 134 (422)
|..||.|+|.+|.. |=..++...-|+||++|-.++.+ +-.+....||---|.+|-|=.-|+. .++|-
T Consensus 98 ~~slpDEill~IFs--------~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--------CLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred cccCCHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 99999999999996 44667788889999999887654 2344556666666777666555663 45553
No 11
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=38.66 E-value=57 Score=32.08 Aligned_cols=105 Identities=26% Similarity=0.377 Sum_probs=61.6
Q ss_pred CCCCCccceeeccccChhHHHHhHHHhcCccccCcccc-cccccCCC----CCCCce-EEEEEEecCCceEEEEeccCCC
Q 014578 80 TSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSF-PVSLKQPG----PRDAPI-QCYIRRERPTGTYRLYLGLSPA 153 (422)
Q Consensus 80 ~~wp~r~~vvaca~vc~~wr~~~~eiv~~pe~~gk~tf-p~sLkqPg----Prd~~i-QC~I~RdK~~~tY~LYL~l~~~ 153 (422)
..-|.+ -.|+|+..|| |. +.|+.---++| |.|+.||- |++.++ --.-.||+.+.
T Consensus 15 ~~~p~~-~~va~~~~~r-w~-------rd~~l~~~l~f~~~s~~q~~~~~~~~ge~lrnatw~rn~tnp----------- 74 (278)
T PF11038_consen 15 GAVPKK-LTVALPPPFR-WA-------RDPQLGTHLTFCRCSRMQPNGYSGPWGEMLRNATWVRNATNP----------- 74 (278)
T ss_pred ccCCcc-eEEecCCCcc-cc-------cCCCcCcceEEEEecccCCccCCCchHhhhccCeeeecCCCC-----------
Confidence 333443 4789999999 86 58888888999 78999994 555433 23445555443
Q ss_pred cCCCCCeeEEeeeecccCCceeEEEEccCCCCcCCCC-ceeeeeeeceeecEEEEecCCCCC
Q 014578 154 LSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSN-TYVGKLRSNFLGTKFTIYDSQPPC 214 (422)
Q Consensus 154 ~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~-~yVGKLRSNFlGTkFtIYD~gpp~ 214 (422)
.+.+=|++-+-+ .|.|.+|.+.+-|-+. .-.|--+--++| .|||-.+-||.
T Consensus 75 ----~~vlelavp~~~-----~yfig~de~ivi~~~~~av~ggc~gvl~g-sfti~sntp~~ 126 (278)
T PF11038_consen 75 ----STVLELAVPVHR-----GYFIGMDETIVIRCDAHAVFGGCKGVLLG-SFTINSNTPPA 126 (278)
T ss_pred ----ceeEEEEEeccC-----ceEEecCceEEEEecchhhcCCcceEEEe-eEEecCCCcHH
Confidence 223334444333 3777777665444221 222333333344 58998887653
No 12
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=28.19 E-value=1.7e+02 Score=27.02 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=31.6
Q ss_pred CCceEEEEEEecCCc--eEEEEeccCCCcCCCCCeeEEeeeec-ccCCceeEEEEccCC-CC-cCCCCceeeeeeeceee
Q 014578 128 DAPIQCYIRRERPTG--TYRLYLGLSPALSGDMSKLLLAARKI-RKATSTDFLISLVGD-DF-SRTSNTYVGKLRSNFLG 202 (422)
Q Consensus 128 d~~iQC~I~RdK~~~--tY~LYL~l~~~~~~e~gKfLLAARKr-rr~~tSnYiISld~~-dl-Sr~s~~yVGKLRSNFlG 202 (422)
+|..-..|+|..-+. +|..|.+-+ .+..+.|...||. .-...++..+.+... .. .-.+...-=+++.||++
T Consensus 61 ~G~~L~~i~~k~~~l~~~w~i~~~~~----~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~ 136 (187)
T PF04525_consen 61 SGNPLFTIRRKLFSLRPTWEIYRGGG----SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWD 136 (187)
T ss_dssp TS-EEEEEE--------EEEEEETT-------GGGEEEEEE----------EEEEET--T----------SEEEES-TTT
T ss_pred CCCEEEEEEeeecccceEEEEEECCC----CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecC
Confidence 355667887754333 999998632 1234567777765 112223333333321 11 01122334478999999
Q ss_pred cEEEEecC
Q 014578 203 TKFTIYDS 210 (422)
Q Consensus 203 TkFtIYD~ 210 (422)
-.|+|||.
T Consensus 137 ~~~~I~~~ 144 (187)
T PF04525_consen 137 RSFTIYDS 144 (187)
T ss_dssp T--EEEEC
T ss_pred cEEEEEEc
Confidence 99999973
Done!