Query 014578
Match_columns 422
No_of_seqs 227 out of 361
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 5.8E-89 2E-93 665.8 22.7 243 120-422 28-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 3E-86 1E-90 637.6 22.6 237 120-416 4-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 5.6E-07 1.9E-11 65.8 0.9 40 56-103 5-44 (53)
4 2ast_B S-phase kinase-associat 96.9 0.00019 6.6E-09 67.5 0.9 39 56-102 5-43 (336)
5 2e31_A FBS1, F-box only protei 96.7 0.00034 1.2E-08 68.9 1.3 39 57-103 48-87 (297)
6 2p1m_B Transport inhibitor res 96.6 0.00042 1.4E-08 70.1 0.4 42 56-104 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.6 0.0076 2.6E-07 58.2 0.6 41 55-103 14-54 (445)
8 3v7d_B Cell division control p 94.5 0.0041 1.4E-07 60.0 -1.5 42 55-104 10-51 (464)
9 3l2o_B F-box only protein 4; s 92.6 0.014 4.8E-07 58.0 -1.4 38 59-104 4-41 (312)
10 3ogk_B Coronatine-insensitive 91.8 0.03 1E-06 56.6 -0.2 37 60-103 13-49 (592)
11 1p22_A F-BOX/WD-repeat protein 91.6 0.017 5.9E-07 55.9 -2.1 42 55-104 6-51 (435)
12 1zxu_A AT5G01750 protein; PFAM 24.7 1.6E+02 0.0054 26.6 6.8 11 242-252 166-176 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=5.8e-89 Score=665.82 Aligned_cols=243 Identities=40% Similarity=0.676 Sum_probs=184.3
Q ss_pred cccCCCCCCCceEEEEEEecCCc------eEEEEeccCCCcCCCCCeeEEeeeecccCCceeEEEEccCCCCcCCCCcee
Q 014578 120 SLKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYV 193 (422)
Q Consensus 120 sLkqPgPrd~~iQC~I~RdK~~~------tY~LYL~l~~~~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yV 193 (422)
.|+||+|+|++|||+|+|||+|+ +|||||+ .++++|||||||+|+++++||+||+|++||||++++||
T Consensus 28 fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~------~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yv 101 (276)
T 2fim_A 28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI 101 (276)
T ss_dssp GGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC------SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred HhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe------CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEE
Confidence 49999999999999999999984 9999994 36789999999999999999999999999999999999
Q ss_pred eeeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccCcchh
Q 014578 194 GKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISA 273 (422)
Q Consensus 194 GKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYE~NVLg~rGPRrM~~im~~IP~s~ 273 (422)
|||||||+||+|+|||+|++.+. ..+|.++.+++|||+|+||+||||++|||+|+|+||.+ .
T Consensus 102 GKLrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~---~ 163 (276)
T 2fim_A 102 GKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S 163 (276)
T ss_dssp EEEEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECB---C
T ss_pred EEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c
Confidence 99999999999999999954321 13566778899999999999999999999999998653 1
Q ss_pred hcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeecCCCcccccccceEeccCCe
Q 014578 274 IQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGR 353 (422)
Q Consensus 274 i~~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~s~~~~~~~~~~~~~~~~l~L~nK~P~w~e~~q~y~LnF~GR 353 (422)
+.|+..|.+ +.. .......++. +...+++++|+||+|+|||++|||||||+||
T Consensus 164 -~~~~~~~~~------------p~~----~~~~ll~~~~----------~~~~~~~~~l~nK~P~wne~~~~y~LnF~GR 216 (276)
T 2fim_A 164 -AENERVPIR------------PRN----ASDGLLVRWQ----------NKTLESLIELHNKPPVWNDDSGSYTLNFQGR 216 (276)
T ss_dssp -TTSCBCCCC------------CSS----TTCSHHHHHH----------HTCCTTEEEEEECCCEEETTTTEEECCCTTC
T ss_pred -cCCCEeccc------------CCC----cccccchhhh----------ccCCcceEeeeccCCcccccCCEEEEecCCe
Confidence 223333221 110 0000111111 2245789999999999999999999999999
Q ss_pred eeccccceeEEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014578 354 VTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE 422 (422)
Q Consensus 354 vt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE 422 (422)
||+|||||||||++ +|+++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 217 Vt~aSvKNFQLv~~---------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 217 VTQASVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp CCSCCTTCEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred eeccccceEEEEec---------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 99999999999998 6778999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=3e-86 Score=637.64 Aligned_cols=237 Identities=39% Similarity=0.669 Sum_probs=189.8
Q ss_pred cccCCCCCCCceEEEEEEecCCc------eEEEEeccCCCcCCCCCeeEEeeeecccCCceeEEEEccCCCCcCCCCcee
Q 014578 120 SLKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYV 193 (422)
Q Consensus 120 sLkqPgPrd~~iQC~I~RdK~~~------tY~LYL~l~~~~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yV 193 (422)
.|+||+|+|++|||+|+|||+|+ +||||++ .++++|||||||+|+++|||||||+|++||||++++||
T Consensus 4 fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~------~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yv 77 (246)
T 3c5n_A 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI 77 (246)
T ss_dssp GGGSCCCTTCEEEEEEEECC------CCCEEEEEES------SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred HcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe------CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEE
Confidence 39999999999999999999984 8999985 35678999999999999999999999999999999999
Q ss_pred eeeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccCcchh
Q 014578 194 GKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISA 273 (422)
Q Consensus 194 GKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYE~NVLg~rGPRrM~~im~~IP~s~ 273 (422)
|||||||+||+|+|||+|++++. ..+|.++.+++|||+|+||+||||++|||+|+|+||.+ .
T Consensus 78 GKLrsNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~---~ 139 (246)
T 3c5n_A 78 GKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S 139 (246)
T ss_dssp EEEEECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECB---C
T ss_pred EEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c
Confidence 99999999999999999965332 13466778899999999999999999999999998653 1
Q ss_pred hcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeecCCCcccccccceEeccCCe
Q 014578 274 IQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGR 353 (422)
Q Consensus 274 i~~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~s~~~~~~~~~~~~~~~~l~L~nK~P~w~e~~q~y~LnF~GR 353 (422)
+.|+..|.+ +.. .......++ .+...+++++|+||+|+|||++|||||||+||
T Consensus 140 -~~~~~~~~~------------p~~----~~~~~~~~~----------~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GR 192 (246)
T 3c5n_A 140 -AENERVPIR------------PRN----ASDGLLVRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGR 192 (246)
T ss_dssp -TTSCBCCCC------------CSS----TTSSHHHHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTS
T ss_pred -cCCCEeecc------------CCC----ccccchhhh----------hccCCcceEEEeccCCcccccCCEEEEecCCe
Confidence 223333221 110 000011111 12245789999999999999999999999999
Q ss_pred eeccccceeEEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCC
Q 014578 354 VTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 416 (422)
Q Consensus 354 vt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~Lssfd 416 (422)
||+|||||||||++ +|+++||||||||++|+|||||+|||||||||||||||||
T Consensus 193 vt~aSvKNFqLv~~---------~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 193 VTQASVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp CCBCCTTCEEEEBT---------TBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred eeccccceEEEEec---------CCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 99999999999998 6788999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.10 E-value=5.6e-07 Score=65.81 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=32.5
Q ss_pred ccCccCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014578 56 EQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (422)
Q Consensus 56 ~~~~w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (422)
++..|+.||+|+|..|+.++ | .++++.||.|||.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 3 4678999999999999764
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.91 E-value=0.00019 Score=67.47 Aligned_cols=39 Identities=28% Similarity=0.667 Sum_probs=33.3
Q ss_pred ccCccCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHh
Q 014578 56 EQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVT 102 (422)
Q Consensus 56 ~~~~w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ 102 (422)
++..|+.||+|+|..|+..+ |.+ +++.||.||++|++++
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLA 43 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHH
T ss_pred ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHh
Confidence 46789999999999999999 333 6899999999999987
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.75 E-value=0.00034 Score=68.95 Aligned_cols=39 Identities=33% Similarity=0.772 Sum_probs=33.7
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCCCCcccee-eccccChhHHHHhH
Q 014578 57 QSQWANMPPELLLDIIQRIEASQTSWPARRDVV-ACASVCKSWRAVTK 103 (422)
Q Consensus 57 ~~~w~~lp~ell~~i~~r~e~se~~wp~r~~vv-aca~vc~~wr~~~~ 103 (422)
....+.||+|||.+|+.|| |.+ +++ .|+.|||.||.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhc
Confidence 3468899999999999999 764 588 99999999999764
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.56 E-value=0.00042 Score=70.08 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=30.8
Q ss_pred ccCccCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHH
Q 014578 56 EQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (422)
Q Consensus 56 ~~~~w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (422)
+...|+.||+|+|..|+.++ |..+++++|+.|||+|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 7778899999999999998433
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.55 E-value=0.0076 Score=58.23 Aligned_cols=41 Identities=24% Similarity=0.589 Sum_probs=34.6
Q ss_pred cccCccCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014578 55 VEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (422)
Q Consensus 55 ~~~~~w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (422)
....-++.||+|||..|+..++. +++..||.|||.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcC
Confidence 34566899999999999999943 558999999999998774
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.45 E-value=0.0041 Score=59.99 Aligned_cols=42 Identities=17% Similarity=0.472 Sum_probs=35.6
Q ss_pred cccCccCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHH
Q 014578 55 VEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (422)
Q Consensus 55 ~~~~~w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (422)
.+..-++.||+|+|..|+..| |. ++++.|+.|||.|++++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 456678899999999999999 43 4689999999999998754
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.56 E-value=0.014 Score=57.99 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=32.8
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHH
Q 014578 59 QWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (422)
Q Consensus 59 ~w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (422)
-|.+||.|++..|+.-|+. +++..||.|||.||.++.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999943 4589999999999998854
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.76 E-value=0.03 Score=56.58 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=32.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014578 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (422)
Q Consensus 60 w~~lp~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (422)
.+.||+|+|..|+..+ +..+++++|+-|||+|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4579999999999999 456788999999999999853
No 11
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.56 E-value=0.017 Score=55.85 Aligned_cols=42 Identities=24% Similarity=0.566 Sum_probs=34.5
Q ss_pred cccCccCCCCHH----HHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHH
Q 014578 55 VEQSQWANMPPE----LLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (422)
Q Consensus 55 ~~~~~w~~lp~e----ll~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (422)
.+.+-.+.||+| ||..|+..|+. +++..||.|||.|++++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 455667889999 99999999854 5688999999999988753
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=24.66 E-value=1.6e+02 Score=26.56 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=5.8
Q ss_pred eeEEEEEEeec
Q 014578 242 YSVATISYELN 252 (422)
Q Consensus 242 ~ela~VsYE~N 252 (422)
..||.|+=+.+
T Consensus 166 ~~Va~I~kk~~ 176 (217)
T 1zxu_A 166 AIVAQMHRKHT 176 (217)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEEEeeee
Confidence 45677776543
Done!