Query 014580
Match_columns 422
No_of_seqs 304 out of 1745
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5a_X RF1, peptide chain rele 100.0 2E-112 6E-117 853.9 38.3 352 65-421 1-354 (354)
2 1zbt_A RF-1, peptide chain rel 100.0 1E-112 5E-117 858.0 34.5 352 67-419 17-370 (371)
3 2b3t_B RF-1, peptide chain rel 100.0 9E-112 3E-116 850.3 14.9 351 65-420 5-358 (360)
4 1gqe_A Release factor 2, RF2; 100.0 6E-106 2E-110 809.7 35.7 335 68-409 26-363 (365)
5 1rq0_A RF-1, peptide chain rel 100.0 4E-106 1E-110 804.3 27.1 332 73-419 2-333 (342)
6 2ihr_1 Peptide chain release f 100.0 2E-103 6E-108 791.4 21.8 330 68-411 18-353 (365)
7 2rsm_A Probable peptide chain 100.0 8.3E-39 2.8E-43 274.1 9.1 100 243-345 10-110 (115)
8 1j26_A Immature colon carcinom 99.9 7.4E-26 2.5E-30 194.5 9.9 71 273-343 12-107 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 1.2E-25 4.1E-30 192.1 8.9 69 275-343 7-99 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 8.2E-24 2.8E-28 188.3 7.1 70 275-344 7-100 (140)
11 2lw1_A ABC transporter ATP-bin 94.5 0.12 4.2E-06 41.8 7.6 46 62-107 24-72 (89)
12 3err_A Fusion protein of micro 77.6 6.3 0.00022 41.6 8.6 68 77-154 138-206 (536)
13 4fla_A Regulation of nuclear P 62.4 83 0.0028 27.7 11.8 71 57-128 23-106 (152)
14 1m1j_B Fibrinogen beta chain; 56.8 1.3E+02 0.0044 31.3 13.0 108 47-160 76-193 (464)
15 3lay_A Zinc resistance-associa 56.7 44 0.0015 30.2 8.5 37 71-107 93-129 (175)
16 1xaw_A Occludin; coiled-coil, 56.2 60 0.002 28.5 9.0 41 63-103 62-102 (140)
17 2a26_A Calcyclin-binding prote 53.7 57 0.0019 23.7 7.1 40 115-155 8-47 (50)
18 2dq0_A Seryl-tRNA synthetase; 53.1 1.7E+02 0.0057 30.0 13.3 70 90-162 30-103 (455)
19 2dq3_A Seryl-tRNA synthetase; 52.2 2E+02 0.0068 29.0 14.1 26 137-162 77-102 (425)
20 3oja_B Anopheles plasmodium-re 48.9 1.4E+02 0.0048 30.5 12.1 23 134-156 557-579 (597)
21 2rbd_A BH2358 protein; putativ 45.6 1.3E+02 0.0045 26.1 9.7 57 105-162 18-74 (171)
22 3ghg_A Fibrinogen alpha chain; 45.5 35 0.0012 36.1 6.6 15 66-80 63-77 (562)
23 1gqe_A Release factor 2, RF2; 43.8 1.6E+02 0.0055 29.6 11.1 91 67-161 9-113 (365)
24 1ses_A Seryl-tRNA synthetase; 41.7 2.7E+02 0.0091 28.1 12.6 24 139-162 75-98 (421)
25 3na7_A HP0958; flagellar bioge 41.0 97 0.0033 28.9 8.6 21 191-211 175-196 (256)
26 3viq_B Mating-type switching p 40.7 76 0.0026 25.6 6.6 43 65-107 13-57 (85)
27 3qne_A Seryl-tRNA synthetase, 39.3 2.9E+02 0.0098 28.7 12.5 24 139-162 82-105 (485)
28 2dfs_A Myosin-5A; myosin-V, in 37.2 1.5E+02 0.005 33.9 10.6 10 68-77 929-938 (1080)
29 3lay_A Zinc resistance-associa 33.2 2.7E+02 0.0091 25.0 11.5 42 121-162 99-140 (175)
30 1wle_A Seryl-tRNA synthetase; 30.8 3.6E+02 0.012 28.0 11.7 24 139-162 127-150 (501)
31 2dfs_A Myosin-5A; myosin-V, in 29.8 3.4E+02 0.012 30.9 12.1 16 140-155 1028-1043(1080)
32 2axy_A Poly(RC)-binding protei 29.4 23 0.0008 26.8 1.8 47 292-341 21-72 (73)
33 4etr_A Putative uncharacterize 28.5 2.7E+02 0.0094 23.6 9.5 97 104-202 10-120 (153)
34 3lss_A Seryl-tRNA synthetase; 27.9 4E+02 0.014 27.6 11.3 26 137-162 113-138 (484)
35 1gax_A Valrs, valyl-tRNA synth 27.5 70 0.0024 35.5 5.9 56 59-116 799-857 (862)
36 2ocy_A RAB guanine nucleotide 27.3 3.3E+02 0.011 24.1 10.8 42 115-158 83-124 (154)
37 3uun_A Dystrophin; triple heli 26.8 2.2E+02 0.0075 22.0 13.8 87 66-155 8-98 (119)
38 2ctk_A Vigilin; K homology typ 26.0 78 0.0027 25.7 4.5 51 292-345 33-88 (104)
39 1ysm_A Calcyclin-binding prote 25.9 1.5E+02 0.0053 23.2 6.0 40 114-154 6-45 (77)
40 2fxo_A Myosin heavy chain, car 25.5 3E+02 0.01 23.1 10.0 23 136-158 98-120 (129)
41 2ocy_A RAB guanine nucleotide 24.6 3.7E+02 0.013 23.8 9.8 27 134-160 71-97 (154)
42 1deq_A Fibrinogen (alpha chain 24.1 4.5E+02 0.015 26.6 10.4 24 143-166 177-200 (390)
43 2eqb_B RAB guanine nucleotide 23.7 3.1E+02 0.01 22.6 11.1 87 69-160 7-94 (97)
44 2ctf_A Vigilin; K homology typ 22.4 84 0.0029 25.5 4.0 48 292-343 43-94 (102)
45 2ctl_A Vigilin; K homology typ 22.1 74 0.0025 25.5 3.6 50 291-343 32-89 (97)
46 3twe_A Alpha4H; unknown functi 21.9 1.2E+02 0.0041 19.0 3.6 21 139-159 5-25 (27)
47 3na7_A HP0958; flagellar bioge 21.7 4.8E+02 0.016 24.1 12.4 18 89-106 88-105 (256)
48 3oa7_A Head morphogenesis prot 21.2 4.8E+02 0.017 24.1 9.2 45 74-118 9-54 (206)
49 1m1j_C Fibrinogen gamma chain; 20.5 5.6E+02 0.019 25.9 10.5 6 238-243 225-230 (409)
50 3qne_A Seryl-tRNA synthetase, 20.5 1.5E+02 0.0052 30.8 6.4 46 183-228 309-354 (485)
51 3tuf_A Stage III sporulation p 20.2 5.1E+02 0.017 23.8 9.6 48 59-106 83-130 (197)
52 3uul_A Utrophin; spectrin repe 20.0 3.1E+02 0.011 21.2 15.3 87 65-154 7-97 (118)
No 1
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=1.7e-112 Score=853.85 Aligned_cols=352 Identities=42% Similarity=0.708 Sum_probs=344.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 014580 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATE 142 (422)
Q Consensus 65 m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~e 142 (422)
|.+|++.+++|+++|+.+|++|+| |++++++++||++.|+++++.|++|.+..+|+.++.+|+. |+||++||++
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~ 76 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKA 76 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 357899999999999999999998 9999999999999999999999999999999999999984 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCce
Q 014580 143 ELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222 (422)
Q Consensus 143 El~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k 222 (422)
|+..++++++.++.+|...|+|+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.+|||
T Consensus 77 e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k 156 (354)
T 3d5a_X 77 EREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFS 156 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCCCccccccC
Q 014580 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302 (422)
Q Consensus 223 ~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~ 302 (422)
+|++.|+|++|||+||+|+|||||||||+|+++||+|||||+|+|+|+++++++.|+++||+|+|+|||||||||||||+
T Consensus 157 ~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~ 236 (354)
T 3d5a_X 157 KVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTD 236 (354)
T ss_dssp EEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCC
T ss_pred EEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCcccccc
Q 014580 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHR 382 (422)
Q Consensus 303 saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDhR 382 (422)
|||||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++.++.|+.++|+|+||++||||||||+||||||
T Consensus 237 SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~q~rVtDhR 316 (354)
T 3d5a_X 237 SAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHR 316 (354)
T ss_dssp CEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTTTEEEETT
T ss_pred ceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCCCeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccccCccChHHHHHHHHHHHHHHHHHccCCC
Q 014580 383 VGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421 (422)
Q Consensus 383 ~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~~~ 421 (422)
||++++||++||+| +||+||++++.++++++|+++..+
T Consensus 317 ~~~~~~~l~~vldG-~Ld~~I~a~l~~~~~~~l~~~~~~ 354 (354)
T 3d5a_X 317 IGFTTHDLEGVLSG-HLTPILEALKRADQERQLAALAEG 354 (354)
T ss_dssp TTEEECCHHHHTTT-CCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cCceeCChHHhhCC-chHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999 799999999999999999987543
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=1.4e-112 Score=858.04 Aligned_cols=352 Identities=39% Similarity=0.690 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 014580 67 QRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144 (422)
Q Consensus 67 ~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl 144 (422)
.+++.+++|+++|+.+|++|+| |++++++++||++.|+++++.|++|.+..+|+.++.+|+.+.+.|+||++||++|+
T Consensus 17 ~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~ 96 (371)
T 1zbt_A 17 DQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEEL 96 (371)
T ss_dssp HHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 5889999999999999999998 99999999999999999999999999999999999999974245999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEE
Q 014580 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224 (422)
Q Consensus 145 ~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a 224 (422)
..++++++.++.+|...|+|+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.+|||+|
T Consensus 97 ~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv 176 (371)
T 1zbt_A 97 KNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEV 176 (371)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCCCccccccCce
Q 014580 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304 (422)
Q Consensus 225 ~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~sa 304 (422)
++.|+|++|||+||+|+|||||||||+|+++||+|||||+|+|+|+++++++.|+++||+|+|+|||||||||||||+||
T Consensus 177 ~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~Sa 256 (371)
T 1zbt_A 177 VAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATA 256 (371)
T ss_dssp EEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECC---------CCCCE
T ss_pred EEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccccccccCcCcEEEEEecCCCCCCCccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCcccccccc
Q 014580 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384 (422)
Q Consensus 305 VrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDhR~g 384 (422)
|||||+||||+|+||++|||++||+.|+++|+++|++.+.+++.++.++.|++++|+|+||++||||||||+||||||||
T Consensus 257 VrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~ig~g~Rse~IRtYnf~q~rVtDhRtg 336 (371)
T 1zbt_A 257 VRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIG 336 (371)
T ss_dssp EEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCSCSCTTSEEEEEETTTTEEEETTTT
T ss_pred EEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCeeeEECCCCEeeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCccChHHHHHHHHHHHHHHHHHccC
Q 014580 385 ITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419 (422)
Q Consensus 385 ~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~ 419 (422)
++++||++||+| +||+||++++.++++++|+++.
T Consensus 337 ~~~~~l~~VldG-dLd~~I~a~l~~~~~~~l~~~~ 370 (371)
T 1zbt_A 337 LTLQKLDSILSG-KLDEVIDALILYDQTQKLEELN 370 (371)
T ss_dssp EEESCHHHHHTT-CCHHHHHHHHHHHHHHHHHHCC
T ss_pred CeECChHHHhCC-cHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999 7999999999999999998763
No 3
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=8.7e-112 Score=850.33 Aligned_cols=351 Identities=44% Similarity=0.763 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 014580 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATE 142 (422)
Q Consensus 65 m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~e 142 (422)
|.++++.+++|+++|+.+|++|+| |++++++++|+++.|+++++.|++|.+..+++.++.+|+ + |+||++||++
T Consensus 5 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e---D~e~~~~a~~ 80 (360)
T 2b3t_B 5 IVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D---DPEMREMAQD 80 (360)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CHHHHHHHHH
Confidence 567899999999999999999998 999999999999999999999999999999999999998 3 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCce
Q 014580 143 ELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222 (422)
Q Consensus 143 El~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k 222 (422)
|+..++++++.++.+|...|||+||+|.+||||||+||+||+||++||++||+||.+||+++||++++++.++++.+|||
T Consensus 81 e~~~l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k 160 (360)
T 2b3t_B 81 ELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK 160 (360)
T ss_dssp --------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEE
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCce
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCccc-cccCCCCeEEEEeccCCCCCcccccc
Q 014580 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTT 301 (422)
Q Consensus 223 ~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~~-~~i~~~dl~i~~~RssGpGGQ~VNkt 301 (422)
+|++.|+|++|||+||+|+|||||||||+|+++||+|||||+|+|+|++++++ +.|+++||+|+|+|||||||||||||
T Consensus 161 ~~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt 240 (360)
T 2b3t_B 161 EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTT 240 (360)
T ss_dssp EEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCS
T ss_pred EEEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCcccccccccChhheEEeeecCCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999888 89999999999999999999999999
Q ss_pred CceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCccccc
Q 014580 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDH 381 (422)
Q Consensus 302 ~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDh 381 (422)
+|||||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++.++.|++++|+|+||++||||||||+|||||
T Consensus 241 ~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~~~rVtDh 320 (360)
T 2b3t_B 241 DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDH 320 (360)
T ss_dssp SEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTTTEEEEG
T ss_pred cceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCeeeEECCCCeeeec
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred cccccccCcccccCccChHHHHHHHHHHHHHHHHHccCC
Q 014580 382 RVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420 (422)
Q Consensus 382 R~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~~ 420 (422)
|||++++||++||+| +||+||++++.++++++|+++..
T Consensus 321 Rt~~~~~~l~~vldG-~Ld~~I~a~l~~~~~~~l~~~~~ 358 (360)
T 2b3t_B 321 RINLTLYRLDEVMEG-KLDMLIEPIIQEHQADQLAALSE 358 (360)
T ss_dssp GGTEEESCHHHHHHT-CTHHHHHHHHHHHHHHHCC----
T ss_pred ccCcEECCHHHHhCC-CHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999 79999999999999999987643
No 4
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=6.3e-106 Score=809.72 Aligned_cols=335 Identities=33% Similarity=0.557 Sum_probs=320.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 014580 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (422)
Q Consensus 68 kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~ 145 (422)
+++.+++|+++|+.+|++|+| |+++++++++|++.|+++++.|++|.+..+|+.++.+|+.+ +.|+||+++|.+|+.
T Consensus 26 ~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-e~D~e~~~~a~~e~~ 104 (365)
T 1gqe_A 26 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVE-ADDEETFNEAVAELD 104 (365)
T ss_dssp THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 467788999999999999999 99999999999999999999999999999999999999976 469999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEE
Q 014580 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225 (422)
Q Consensus 146 ~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~ 225 (422)
.++++++.++. .+||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.+|||+|+
T Consensus 105 ~l~~~l~~le~----~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~ 180 (365)
T 1gqe_A 105 ALEEKLAQLEF----RRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVT 180 (365)
T ss_dssp HHHHHHHHHGG----GGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEE
T ss_pred HHHHHHHHHHH----HHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEE
Confidence 99999999884 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCC-ccccccCCCCeEEEEeccCCCCCccccccCce
Q 014580 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD-EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304 (422)
Q Consensus 226 ~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~-~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~sa 304 (422)
+.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|+++ ++++.|+++||+|+|+|||||||||||||+||
T Consensus 181 ~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~sa 260 (365)
T 1gqe_A 181 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA 260 (365)
T ss_dssp EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCE
T ss_pred EEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCCcccCccce
Confidence 99999999999999999999999999999999999999999999997 48999999999999999999999999999999
Q ss_pred EEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCcccccccc
Q 014580 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384 (422)
Q Consensus 305 VrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDhR~g 384 (422)
|||||+||||+|+||++|||++||+.|+++|+++|++++.+++.++.++.|+.+ ....||++||||||||+||||||||
T Consensus 261 Vrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~-~~i~~G~~IRtY~f~~~rVkDhRt~ 339 (365)
T 1gqe_A 261 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNK-SDIGWGSQIRSYVLDDSRIKDLRTG 339 (365)
T ss_dssp EEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTC-CCCCSCSEEEEEEGGGTEEEETTTC
T ss_pred EEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccCccCCeEeEECCCCeeeccccC
Confidence 999999999999999999999999999999999999999999999999988843 2345677999999999999999999
Q ss_pred ccccCcccccCccChHHHHHHHHHH
Q 014580 385 ITHHAISDMMEGENLDIFIDALLLQ 409 (422)
Q Consensus 385 ~~~~~l~~vl~G~~Ld~~i~~l~~~ 409 (422)
++++||++||+| +||+||++++.+
T Consensus 340 ~~~~~l~~vldG-dld~~I~a~l~~ 363 (365)
T 1gqe_A 340 VETRNTQAVLDG-SLDQFIEASLKA 363 (365)
T ss_dssp CEESCHHHHHTT-CCHHHHHHHHHT
T ss_pred ceECCHHHHhCC-CHHHHHHHHHHh
Confidence 999999999999 799999999864
No 5
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=3.7e-106 Score=804.27 Aligned_cols=332 Identities=42% Similarity=0.718 Sum_probs=304.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 014580 73 ERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152 (422)
Q Consensus 73 ~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~ 152 (422)
++|+++|+.+|++|+||++++++++||++.|+++++.|++|. +++++++|+.+ +.|+ .+|+..++++++
T Consensus 2 ~~r~~el~~~~~~p~~d~~~~~~~~ke~~~l~~~v~~~~~~~----~~~~~~~l~~e-~~D~------~~e~~~l~~~l~ 70 (342)
T 1rq0_A 2 KEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIK----ETQEFIELLRE-EGEN------ELEIEKYEKELD 70 (342)
T ss_dssp TTTTTHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTT-TTTC------CSCHHHHHHHHH
T ss_pred hHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHh-cCCH------HHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999 88888888864 3465 788999999999
Q ss_pred HHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccc
Q 014580 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232 (422)
Q Consensus 153 ~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ 232 (422)
.++.+|...|+| +|.+||+|||+||+||+||++||+|||+||.+||+++||++++++.++++.+|||+|++.|+|++
T Consensus 71 ~le~~l~~lL~p---~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~ 147 (342)
T 1rq0_A 71 QLYQELLFLLSP---EASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKN 147 (342)
T ss_dssp HHHHHHHHHHSC---SSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTT
T ss_pred HHHHHHHHhcCc---cccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcC
Confidence 999999888875 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecceeccccCCCCCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCC
Q 014580 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312 (422)
Q Consensus 233 ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~Pt 312 (422)
|||+||+|+|||||||||+|+++||+|||||+|+|+|+++++++.|+++||+|+|+|||||||||||||+|||||+|+||
T Consensus 148 ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPt 227 (342)
T 1rq0_A 148 AYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPT 227 (342)
T ss_dssp HHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTT
T ss_pred HHHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccccccccChhHeEEEeecCCCCCCcccccccceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCccccccccccccCccc
Q 014580 313 GMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392 (422)
Q Consensus 313 Gi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDhR~g~~~~~l~~ 392 (422)
||+|+||++|||++||+.|+++|+++|++.+.+++.++.++.|++++++|+||++||||||||+||||||||++++||++
T Consensus 228 Givv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~Rse~IRtYnf~~~rVtDhRt~~~~~~l~~ 307 (342)
T 1rq0_A 228 GIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQE 307 (342)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTTTEEEETTTTEEESCHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeEEEECCCCeeeecccCceeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccChHHHHHHHHHHHHHHHHHccC
Q 014580 393 MMEGENLDIFIDALLLQQEMDAIASFG 419 (422)
Q Consensus 393 vl~G~~Ld~~i~~l~~~~~~~~l~~~~ 419 (422)
||+| +||+||++++.++++++|+++.
T Consensus 308 vldG-dLd~~I~a~l~~~~~~~l~~~~ 333 (342)
T 1rq0_A 308 ILDG-DLDEIISKLIEHDIENNLEEVL 333 (342)
T ss_dssp HHTT-CCHHHHHHHHHHHHTTTHHHHC
T ss_pred HhCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7999999999999999998764
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=1.7e-103 Score=791.37 Aligned_cols=330 Identities=35% Similarity=0.521 Sum_probs=313.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCHHHHHHHHHHH
Q 014580 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS-LIYECSEDKDMLDMATEEL 144 (422)
Q Consensus 68 kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~e-Ll~e~~~D~em~e~a~eEl 144 (422)
+++.+++|+++|+.+|++|+| |++++++++++++.|+++++.|++|.+..+|+.++.+ |+.+ +| ++|.+|+
T Consensus 18 ~l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~e--ed----~~a~~e~ 91 (365)
T 2ihr_1 18 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAE--ER----EALKPEL 91 (365)
T ss_dssp SHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCT--TG----GGTGGGT
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cH----HHHHHHH
Confidence 477889999999999999998 9999999999999999999999999999999999999 9854 23 7899999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEE
Q 014580 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224 (422)
Q Consensus 145 ~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a 224 (422)
..+++++++++ ..+||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.+|||+|
T Consensus 92 ~~l~~~~~~le----~~~ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~ 167 (365)
T 2ihr_1 92 EEAAKKLDELY----HQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYA 167 (365)
T ss_dssp HHHHHHHHHHH----HHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEE
T ss_pred HHHHHHHHHHH----HHHhcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEE
Confidence 99999999988 34667999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCc-cccccCCCCeEEEEeccCCCCCccccccCc
Q 014580 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303 (422)
Q Consensus 225 ~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~s 303 (422)
++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ +++.|+++||+|+|+|||||||||||||+|
T Consensus 168 ~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~s 247 (365)
T 2ihr_1 168 QILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDS 247 (365)
T ss_dssp EEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCS
T ss_pred EEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCceecccce
Confidence 9999999999999999999999999999999999999999999999864 889999999999999999999999999999
Q ss_pred eEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcccccCCCCCceeEeecCCCccccc
Q 014580 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR--SEQIGSGDRSERIRTYNFPQGRVTDH 381 (422)
Q Consensus 304 aVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r--~~qi~~~~rsekIRtYnfpq~rVtDh 381 (422)
||||+|+||||+|+||++|||++||+.|+++|+++|++++.+++.++.++.| +.+++ ||++||||||||+|||||
T Consensus 248 aVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~---~G~~IRtYnf~~~rVtDh 324 (365)
T 2ihr_1 248 AVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIE---WGSQIRSYVLDKNYVKDH 324 (365)
T ss_dssp EEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCSCCSC---CCSCSEEEEGGGTEEEET
T ss_pred EEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---ccCCeeeEECCCccchhc
Confidence 9999999999999999999999999999999999999999999999999999 55665 455899999999999999
Q ss_pred cccccccCcccccCccChHHHHHHHHHHHH
Q 014580 382 RVGITHHAISDMMEGENLDIFIDALLLQQE 411 (422)
Q Consensus 382 R~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~ 411 (422)
|||++++||++||+| +||+||++++.+..
T Consensus 325 Rtg~~~~~l~~VldG-dld~~I~a~l~~~~ 353 (365)
T 2ihr_1 325 RTGLMRHDPENVLDG-DLMDLIWAGLEWKA 353 (365)
T ss_dssp TTCCEESCHHHHTTT-CCHHHHHHHHHHHH
T ss_pred ccCceeCChHHHhCC-cHHHHHHHHHHHHh
Confidence 999999999999999 79999999998753
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=8.3e-39 Score=274.07 Aligned_cols=100 Identities=28% Similarity=0.363 Sum_probs=95.1
Q ss_pred eeccccCCCCCCCCceeecceEEEEecCCCc-cccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEcCc
Q 014580 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDE 321 (422)
Q Consensus 243 vHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~~~ 321 (422)
-|||||+|+|+++| |||++|+|+|+.++ ..+.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++
T Consensus 10 g~rvqrvp~tes~g---ts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~ 86 (115)
T 2rsm_A 10 GLRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQT 86 (115)
T ss_dssp CCCCCCCCCCCCCC---CCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCS
T ss_pred ceeEEecCcccCCc---cceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCC
Confidence 38999999999999 99999999999886 468999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 014580 322 RSQHMNKAKALKVLCAKLYEMERS 345 (422)
Q Consensus 322 RSQ~~Nk~~A~~~L~~~L~~~~~~ 345 (422)
|||++||+.||++|++||+++...
T Consensus 87 RSQ~~Nr~~A~~~L~~kL~e~~~~ 110 (115)
T 2rsm_A 87 RSVDQNRKIARKVLQEKVDVFYNS 110 (115)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998743
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.93 E-value=7.4e-26 Score=194.54 Aligned_cols=71 Identities=27% Similarity=0.405 Sum_probs=67.6
Q ss_pred ccccccCCCCeEEEEeccCCCCCccccccCceEEEE-EeCCe------------------------eEEEEcCcCCHHHH
Q 014580 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT-HIPTG------------------------MTISIQDERSQHMN 327 (422)
Q Consensus 273 ~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrlt-H~PtG------------------------i~v~~~~~RSQ~~N 327 (422)
.+++.|+++||+++|+|||||||||||||+|||+|+ |+||| |+|+||++|||++|
T Consensus 12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 91 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN 91 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHH
Confidence 467889999999999999999999999999999997 99998 99999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014580 328 KAKALKVLCAKLYEME 343 (422)
Q Consensus 328 k~~A~~~L~~~L~~~~ 343 (422)
|+.|+++|+++|+++.
T Consensus 92 r~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 92 LAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998864
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.92 E-value=1.2e-25 Score=192.12 Aligned_cols=69 Identities=29% Similarity=0.529 Sum_probs=66.0
Q ss_pred ccccCCCCeEEEEeccCCCCCccccccCceEEEEE------eC-----------------Ce-eEEEEcCcCCHHHHHHH
Q 014580 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH------IP-----------------TG-MTISIQDERSQHMNKAK 330 (422)
Q Consensus 275 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH------~P-----------------tG-i~v~~~~~RSQ~~Nk~~ 330 (422)
++.|+++||+++|+|||||||||||||+|||+|+| +| || |+|+||++|||++||+.
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 57899999999999999999999999999999999 88 88 99999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014580 331 ALKVLCAKLYEME 343 (422)
Q Consensus 331 A~~~L~~~L~~~~ 343 (422)
|+++|+++|++..
T Consensus 87 Al~rL~~~l~~a~ 99 (108)
T 2jva_A 87 ALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998865
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.89 E-value=8.2e-24 Score=188.32 Aligned_cols=70 Identities=34% Similarity=0.565 Sum_probs=66.3
Q ss_pred ccccCCCCeEEEEeccCCCCCccccccCceEEEE------EeCC------------------eeEEEEcCcCCHHHHHHH
Q 014580 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT------HIPT------------------GMTISIQDERSQHMNKAK 330 (422)
Q Consensus 275 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrlt------H~Pt------------------Gi~v~~~~~RSQ~~Nk~~ 330 (422)
++.|+++||+|+|+|||||||||||||+|+|+|+ |+|+ ||+|+||++|||++||+.
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~ 86 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREA 86 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHH
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHH
Confidence 5789999999999999999999999999999999 6998 599999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014580 331 ALKVLCAKLYEMER 344 (422)
Q Consensus 331 A~~~L~~~L~~~~~ 344 (422)
|+++|.++|+++..
T Consensus 87 A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 87 ALARLVAMIKELTT 100 (140)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998763
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=94.50 E-value=0.12 Score=41.83 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHhHHHH
Q 014580 62 IKIMEQRVLAIERRSACLENLVNQPEA---SPAEYSKANKELRKLRDSM 107 (422)
Q Consensus 62 ~~~m~~kle~l~~r~~eLe~~lsdP~~---d~~~~~kl~Ke~~~L~~iv 107 (422)
+..+..+++.++.+++.|+..|+||+| |+++...+..++..+..-+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eL 72 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQEL 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999997 8888888888888777643
No 12
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=77.59 E-value=6.3 Score=41.58 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=49.8
Q ss_pred HHHH-HHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 014580 77 ACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL 154 (422)
Q Consensus 77 ~eLe-~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~l 154 (422)
+.++ .-+++|+|+++.+.+.++-.+.|-.+|.+...|....+++..+++-++ .+++++..+++++..+
T Consensus 138 ~~l~~~y~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~eLk----------~lE~eL~e~e~eL~~l 206 (536)
T 3err_A 138 EKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQ----------KLEDDAKDNQQKLEAL 206 (536)
T ss_dssp HHHHHHTTTSTTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHHHH----------HHHHHHHHHHHHHHHH
Confidence 4454 467899999999999999999999999998888877777766665543 2344555555555543
No 13
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=62.36 E-value=83 Score=27.74 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHH
Q 014580 57 LSNDLIKIMEQRVLA-------IERRSACLENLVNQPEA-----SPAEYSKANKELRKLRDSMHLISE-LRTKQKEIDGL 123 (422)
Q Consensus 57 ~~~~l~~~m~~kle~-------l~~r~~eLe~~lsdP~~-----d~~~~~kl~Ke~~~L~~ive~~~~-l~~~~~dl~el 123 (422)
.+.+|++.+. .|+. +.++++.|=-..+||.+ |.....++.++...-...++.|.. +....++-..+
T Consensus 23 ~~~elik~L~-~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L 101 (152)
T 4fla_A 23 LTEELIKALQ-DLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQL 101 (152)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776553 3331 23344444344555654 888888888888777776666644 45666666677
Q ss_pred HHHHh
Q 014580 124 KSLIY 128 (422)
Q Consensus 124 ~eLl~ 128 (422)
..++.
T Consensus 102 ~~~L~ 106 (152)
T 4fla_A 102 ARMLV 106 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 14
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=56.77 E-value=1.3e+02 Score=31.27 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=47.8
Q ss_pred CCCccccCCC-CchHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHhHHHHHHHHHHHHHH
Q 014580 47 SNFRSYSTEM-LSNDLIKI---MEQRVLAIERRSACLENLVNQPEASPAEYS-----KANKELRKLRDSMHLISELRTKQ 117 (422)
Q Consensus 47 ~~~~~~~~~~-~~~~l~~~---m~~kle~l~~r~~eLe~~lsdP~~d~~~~~-----kl~Ke~~~L~~ive~~~~l~~~~ 117 (422)
.|-..++++- +...|++. +...++.|+.++++|+...+. ..++. .+...-..+....+.++++...+
T Consensus 76 ~~G~~CPTtC~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~----~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~ 151 (464)
T 1m1j_B 76 ELGVLCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTT----MYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEM 151 (464)
T ss_dssp TTCEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCCCccHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 3333444333 55555543 344566666666666544332 12221 11111222333333444444333
Q ss_pred HHHHHH-HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014580 118 KEIDGL-KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 118 ~dl~el-~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
+.+... ++.+.. .-+.-...++..++.+..++..|+..+..
T Consensus 152 e~~~~~i~~~~~~--~~~~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 152 ELHYNYIKDNLDN--NIPSSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 222211 11333444556667777777777766654
No 15
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=56.70 E-value=44 Score=30.23 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHH
Q 014580 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSM 107 (422)
Q Consensus 71 ~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~iv 107 (422)
++.....+|..++..|++|+.++.++.+|+..|+..+
T Consensus 93 ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 93 QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999888887743
No 16
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=56.24 E-value=60 Score=28.51 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 014580 63 KIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKL 103 (422)
Q Consensus 63 ~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L 103 (422)
+.+..+++.+.++|.+|+.+|..-.-.+.++..+..|++++
T Consensus 62 k~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~ 102 (140)
T 1xaw_A 62 KSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRL 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 34567888888888888888776222344555444444443
No 17
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=53.71 E-value=57 Score=23.73 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 014580 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQ 155 (422)
Q Consensus 115 ~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le 155 (422)
....|++|++.|+.. ..-+-.++.+..|+..++.++..++
T Consensus 8 eL~~DL~El~~Ll~~-AkR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 8 ELQKDLEEVKVLLEK-ATRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577777777654 4678899999999999998888654
No 18
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=53.12 E-value=1.7e+02 Score=30.00 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014580 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK-SLIYECSEDKDML---DMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 90 ~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~-eLl~e~~~D~em~---e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
.++...+-++...+..-++.++.-+ +.+..-. .+.+..++-++++ ..+.++++.+++++.+++.++...+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~---n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHER---NKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444443333 3332221 1222212223443 3456788888888888888887765
No 19
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=52.19 E-value=2e+02 Score=29.02 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014580 137 LDMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
...+.++++.+++++..++.++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999988887765
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.86 E-value=1.4e+02 Score=30.47 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014580 134 KDMLDMATEELCLAIDEEKRLQS 156 (422)
Q Consensus 134 ~em~e~a~eEl~~l~~~l~~le~ 156 (422)
.+...++++|...+..+++++++
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666554
No 21
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=45.64 E-value=1.3e+02 Score=26.08 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014580 105 DSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 105 ~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
++...|..|.....-+..+.-+++- ..|+|++.+++.-++....+++.+++.+...=
T Consensus 18 E~~~lW~~l~~~~~~i~~~~~f~~~-~~D~elk~iL~~~~~~~~~~i~~l~~~~~~~g 74 (171)
T 2rbd_A 18 EVFSTWTYLSTNNGLINGYRSFINH-TGDEDLKNLIDEAIQAMQDENHQLEELLRSNG 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4455666777777777777666654 57999999999999999999999998776543
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.47 E-value=35 Score=36.08 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 014580 66 EQRVLAIERRSACLE 80 (422)
Q Consensus 66 ~~kle~l~~r~~eLe 80 (422)
.+++++|+++|++++
T Consensus 63 tkrINELKnqLEdls 77 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666665554
No 23
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=43.79 E-value=1.6e+02 Score=29.57 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Q 014580 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRK---------LRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137 (422)
Q Consensus 67 ~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~---------L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~ 137 (422)
.+++.+..++..+...+ +.+.-.+++..+.++++. ...+...+..+....+.+.++...+.+ -.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~-~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d---~~~~~ 84 (365)
T 1gqe_A 9 NRIQDLTERSDVLRGYL-DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLED---VSGLL 84 (365)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 46666677776666543 111112344444444332 222233333333333333333333322 34556
Q ss_pred HHHHHH----H-HHHHHHHHHHHHHHHHh
Q 014580 138 DMATEE----L-CLAIDEEKRLQSLLLKS 161 (422)
Q Consensus 138 e~a~eE----l-~~l~~~l~~le~~l~~~ 161 (422)
+|+.+| + +.+.+++..++.++...
T Consensus 85 el~~~e~D~e~~~~a~~e~~~l~~~l~~l 113 (365)
T 1gqe_A 85 ELAVEADDEETFNEAVAELDALEEKLAQL 113 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 2 34566666776665554
No 24
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.69 E-value=2.7e+02 Score=28.09 Aligned_cols=24 Identities=17% Similarity=-0.021 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 014580 139 MATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
.+.++++.+++++.+++.++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 75 ALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888877655
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.01 E-value=97 Score=28.91 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHH-HcCCeEEEE
Q 014580 191 VDVFKMYERYSQ-KKGWKFEVV 211 (422)
Q Consensus 191 ~~L~~mY~~~a~-~~g~~~~iv 211 (422)
..|+..|.+.-. ..|.-+-.|
T Consensus 175 ~~lL~~Yerir~~~~g~avv~v 196 (256)
T 3na7_A 175 PKIYSFYERIRRWAKNTSIVTI 196 (256)
T ss_dssp HHHHHHHHHHHHHHGGGSEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEEe
Confidence 478999999886 466655444
No 26
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=40.74 E-value=76 Score=25.60 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHH
Q 014580 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSM 107 (422)
Q Consensus 65 m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~iv 107 (422)
+..+...+++.+.++...+.+|+. -.++..++..+|+.++++.
T Consensus 13 L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~g 57 (85)
T 3viq_B 13 LEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIA 57 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444555555555566665542 1245555566666666654
No 27
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=39.35 E-value=2.9e+02 Score=28.72 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 014580 139 MATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
.+.+++..+++++.+++.++...|
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888886655
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.16 E-value=1.5e+02 Score=33.88 Aligned_cols=10 Identities=10% Similarity=0.607 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 014580 68 RVLAIERRSA 77 (422)
Q Consensus 68 kle~l~~r~~ 77 (422)
++..+..+++
T Consensus 929 kl~eLq~rL~ 938 (1080)
T 2dfs_A 929 KIMQLQRKID 938 (1080)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 29
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.20 E-value=2.7e+02 Score=24.98 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014580 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 121 ~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
.++..++..+..|++-.+.+..|+.++..++.....+....+
T Consensus 99 ~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 99 YEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655567888888888899999988887766666655
No 30
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.83 E-value=3.6e+02 Score=27.97 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 014580 139 MATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
.+.++++.+++++.+++.++...+
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888876655
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.81 E-value=3.4e+02 Score=30.89 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 014580 140 ATEELCLAIDEEKRLQ 155 (422)
Q Consensus 140 a~eEl~~l~~~l~~le 155 (422)
++.|...|++++++++
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 32
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=29.43 E-value=23 Score=26.81 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCCccccc--cCceEEEEEeCCee---EEEEcCcCCHHHHHHHHHHHHHHHHHH
Q 014580 292 GSGGQHANT--TNSAVRVTHIPTGM---TISIQDERSQHMNKAKALKVLCAKLYE 341 (422)
Q Consensus 292 GpGGQ~VNk--t~saVrltH~PtGi---~v~~~~~RSQ~~Nk~~A~~~L~~~L~~ 341 (422)
|+||.+++. .+|.++|.-.+.|- +|+.... ..+-..|..++..+|.+
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHhc
Confidence 899999985 46778877666652 4444443 45667788888877753
No 33
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=28.47 E-value=2.7e+02 Score=23.63 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc-------ccceeEE
Q 014580 104 RDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD-------ERDCILE 176 (422)
Q Consensus 104 ~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~llp~~~~D-------~~~~~le 176 (422)
..+++.++.+.....|-..-.+-+.+.-+|++++..+.+-...-..-+..|...+... -..|.+ -...|+.
T Consensus 10 ~~~i~~Ln~Li~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~l--Gg~p~~~~s~~g~~hr~~~~ 87 (153)
T 4etr_A 10 DDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLEL--GGKPKDSTSFAGDLHRRWVD 87 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCC----------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCcHHHHHHHHHHH
Confidence 5667777777766666666555444446799999998888888888888888766553 222322 2446777
Q ss_pred EEcCCCcH------HHHHHHHH-HHHHHHHHHH
Q 014580 177 VRAGTGGE------EASLFAVD-VFKMYERYSQ 202 (422)
Q Consensus 177 I~aG~GG~------Ea~~~a~~-L~~mY~~~a~ 202 (422)
|.+--+|. +++...++ ..+.|....+
T Consensus 88 lks~~~~~~~~~iL~~~~~gE~~~~~~Y~~al~ 120 (153)
T 4etr_A 88 LKSLVTGKDEEAVLNECERGEDVAKHRYQAALE 120 (153)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77764332 22333333 6667777665
No 34
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.89 E-value=4e+02 Score=27.59 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014580 137 LDMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
...+.+++..+++++.+++.++...+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999988886655
No 35
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=27.53 E-value=70 Score=35.52 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014580 59 NDLIKIMEQRVLAIERRSACLENLVNQPEA---SPAEYSKANKELRKLRDSMHLISELRTK 116 (422)
Q Consensus 59 ~~l~~~m~~kle~l~~r~~eLe~~lsdP~~---d~~~~~kl~Ke~~~L~~ive~~~~l~~~ 116 (422)
....+-+.+.++++++.++.++.+|++|+| .|++. +.++..+|.+..+.+..+.+.
T Consensus 799 ~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~--~~~~~~~~~~~~~~~~~~~~~ 857 (862)
T 1gax_A 799 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEV--VEAEEARLKENLEQAERIREA 857 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 446667788899999999999999999998 33322 455555565555554444433
No 36
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.33 E-value=3.3e+02 Score=24.12 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014580 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLL 158 (422)
Q Consensus 115 ~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l 158 (422)
....++++|-.-+-+ +-..|...|..+-..++.+.+.|+..+
T Consensus 83 ~ie~ElEeLTasLFe--EAN~MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 83 KLNKEVEDLTASLFD--EANNMVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555332221 124455555555555555555554433
No 37
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=26.82 E-value=2.2e+02 Score=22.00 Aligned_cols=87 Identities=10% Similarity=-0.033 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHHHHH
Q 014580 66 EQRVLAIERRSACLENLVNQ--P-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL-KSLIYECSEDKDMLDMAT 141 (422)
Q Consensus 66 ~~kle~l~~r~~eLe~~lsd--P-~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el-~eLl~e~~~D~em~e~a~ 141 (422)
...++.+...+.+.+..+.. | ..|++......+++..+..-+...+.-. +.+... ..|+.....+++-...+.
T Consensus 8 ~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v---~~~~~~g~~L~~~~~~~~~~~~~i~ 84 (119)
T 3uun_A 8 QTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRV---GNILQLGSKLIGTGKLSEDEETEVQ 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45667777778777766643 3 3488888888888888877766654433 333332 345543334565555555
Q ss_pred HHHHHHHHHHHHHH
Q 014580 142 EELCLAIDEEKRLQ 155 (422)
Q Consensus 142 eEl~~l~~~l~~le 155 (422)
..+..+...-+.+.
T Consensus 85 ~~l~~l~~rw~~L~ 98 (119)
T 3uun_A 85 EQMNLLNSRWECLR 98 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 38
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.96 E-value=78 Score=25.71 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCCCccccc--cCceEEEEEeCCe---eEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 014580 292 GSGGQHANT--TNSAVRVTHIPTG---MTISIQDERSQHMNKAKALKVLCAKLYEMERS 345 (422)
Q Consensus 292 GpGGQ~VNk--t~saVrltH~PtG---i~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~ 345 (422)
|+||-++++ .+|.|+|.-.+.| =.|+.... . .|-+.|..++...+.+.+.+
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~--~-e~v~~A~~~I~~i~~e~e~~ 88 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL--A-ANLDRAKAGLLERVKELQAE 88 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC--H-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC--H-HHHHHHHHHHHHHHhhHHHh
Confidence 899999985 4577887655555 12333322 3 67888999998888776644
No 39
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=25.88 E-value=1.5e+02 Score=23.23 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 014580 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL 154 (422)
Q Consensus 114 ~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~l 154 (422)
.....||+|++.|+.. ..-+-.+..+..|+..++.++..+
T Consensus 6 eeL~~DLeEl~~Ll~~-AkR~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 6 EELQKDLEEVKVLLEK-STRKRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666653 356788999999999998888764
No 40
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=25.46 E-value=3e+02 Score=23.06 Aligned_cols=23 Identities=22% Similarity=0.018 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014580 136 MLDMATEELCLAIDEEKRLQSLL 158 (422)
Q Consensus 136 m~e~a~eEl~~l~~~l~~le~~l 158 (422)
....+..+-..++..+..|+..+
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 41
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.55 E-value=3.7e+02 Score=23.78 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014580 134 KDMLDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 134 ~em~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
...+..|+.+...+..++++|...|+.
T Consensus 71 ~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 71 NELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888865554
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.09 E-value=4.5e+02 Score=26.63 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCC
Q 014580 143 ELCLAIDEEKRLQSLLLKSLLPKD 166 (422)
Q Consensus 143 El~~l~~~l~~le~~l~~~llp~~ 166 (422)
+++..+++.++|+.-.-..|+|.-
T Consensus 177 D~e~ye~qqKQL~qv~a~~llP~~ 200 (390)
T 1deq_A 177 DLEDYKNQQKQLEQVIAINLLPSR 200 (390)
T ss_pred cHHHHHHHHHHHHhhhhhcccccc
Confidence 455555555555555555566543
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.67 E-value=3.1e+02 Score=22.56 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 014580 69 VLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSM-HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147 (422)
Q Consensus 69 le~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~iv-e~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l 147 (422)
++.+..++..|+...++ -..+..++..++..-...- .+=........++++|-.-+-+ +-..|...|..+-..+
T Consensus 7 ~e~lre~l~~le~~~~~---~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe--EAN~MVa~ar~e~~~~ 81 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSD---RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD--EANNMVADARKEKYAI 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 44455566666655544 1223333443333333221 2223344555677777554432 2367888888888888
Q ss_pred HHHHHHHHHHHHH
Q 014580 148 IDEEKRLQSLLLK 160 (422)
Q Consensus 148 ~~~l~~le~~l~~ 160 (422)
+.+.++|+..|..
T Consensus 82 e~kn~~L~~qL~d 94 (97)
T 2eqb_B 82 EILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888888877653
No 44
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.35 E-value=84 Score=25.52 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCCCccccccC---ceEEEEEeC-CeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHH
Q 014580 292 GSGGQHANTTN---SAVRVTHIP-TGMTISIQDERSQHMNKAKALKVLCAKLYEME 343 (422)
Q Consensus 292 GpGGQ~VNkt~---saVrltH~P-tGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~ 343 (422)
|+||+++++.. ++|+| +.| ..=.|+.... ...-+.|...|...+.++.
T Consensus 43 G~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECC---HHHHHHHHHHHHHHHHHHH
Confidence 78999999643 36777 577 2335666654 4556777777776665543
No 45
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.15 E-value=74 Score=25.49 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=33.0
Q ss_pred CCCCCccccc--cCceEEEEEeCCe------eEEEEcCcCCHHHHHHHHHHHHHHHHHHHH
Q 014580 291 GGSGGQHANT--TNSAVRVTHIPTG------MTISIQDERSQHMNKAKALKVLCAKLYEME 343 (422)
Q Consensus 291 sGpGGQ~VNk--t~saVrltH~PtG------i~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~ 343 (422)
=|+||.++|+ .+|.|+|.-.+.| -.|..... ..|-+.|..++...+.+.+
T Consensus 32 IGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 32 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGELE 89 (97)
T ss_dssp SCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHHHH
Confidence 4899999985 4578887765555 13444432 3477788888887765543
No 46
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.86 E-value=1.2e+02 Score=18.98 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014580 139 MATEELCLAIDEEKRLQSLLL 159 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~ 159 (422)
++..|++++++.+.++.++|.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677788888888776653
No 47
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.71 E-value=4.8e+02 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHHhHHH
Q 014580 89 SPAEYSKANKELRKLRDS 106 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~i 106 (422)
++.++..+.+++..++.-
T Consensus 88 ~~kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 88 SERELRSLNIEEDIAKER 105 (256)
T ss_dssp SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 555556666555555443
No 48
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=21.18 E-value=4.8e+02 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHH-HHHHHHhHHHHHHHHHHHHHHH
Q 014580 74 RRSACLENLVNQPEASPAEYSKA-NKELRKLRDSMHLISELRTKQK 118 (422)
Q Consensus 74 ~r~~eLe~~lsdP~~d~~~~~kl-~Ke~~~L~~ive~~~~l~~~~~ 118 (422)
+.++++=..+.||...+.+...+ .+-.+.+...+..|..+....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~ 54 (206)
T 3oa7_A 9 EEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHN 54 (206)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788999855444444 3335566666666666654433
No 49
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.50 E-value=5.6e+02 Score=25.89 Aligned_cols=6 Identities=33% Similarity=0.313 Sum_probs=2.9
Q ss_pred eeecce
Q 014580 238 KFESGI 243 (422)
Q Consensus 238 k~E~Gv 243 (422)
-+|.|.
T Consensus 225 EfWLGl 230 (409)
T 1m1j_C 225 EFWLGN 230 (409)
T ss_dssp CEECCH
T ss_pred cEEeec
Confidence 345553
No 50
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.45 E-value=1.5e+02 Score=30.79 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEE
Q 014580 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 228 (422)
Q Consensus 183 G~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i 228 (422)
++++..+...++.+|..+.+..|+.+.++....++.++..+-++.|
T Consensus 309 pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDi 354 (485)
T 3qne_A 309 PEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDL 354 (485)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheee
Confidence 4678888999999999999999999999999888877644444444
No 51
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=20.23 E-value=5.1e+02 Score=23.79 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHH
Q 014580 59 NDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDS 106 (422)
Q Consensus 59 ~~l~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~i 106 (422)
.+|..+=++|=..--+..+.|...+.+++.+++.-.....++..|...
T Consensus 83 ~yFae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~ 130 (197)
T 3tuf_A 83 DLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEV 130 (197)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445554445555555677889999999999877666666655555544
No 52
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=20.01 E-value=3.1e+02 Score=21.20 Aligned_cols=87 Identities=6% Similarity=-0.046 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHHHH
Q 014580 65 MEQRVLAIERRSACLENLVNQ--P-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL-KSLIYECSEDKDMLDMA 140 (422)
Q Consensus 65 m~~kle~l~~r~~eLe~~lsd--P-~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el-~eLl~e~~~D~em~e~a 140 (422)
....++.+...+.+.|..+.. | ..|++......+++..|..-+...+.-. +.+... ..|+.....+++-...+
T Consensus 7 f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v---~~v~~~g~~L~~~~~~~~~~~~~i 83 (118)
T 3uul_A 7 YQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSV---GSVLQAGNQLMTQGTLSDEEEFEI 83 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCChhHHHHH
Confidence 345677888888888877764 2 2388888888888888877666654433 333332 44554323344444444
Q ss_pred HHHHHHHHHHHHHH
Q 014580 141 TEELCLAIDEEKRL 154 (422)
Q Consensus 141 ~eEl~~l~~~l~~l 154 (422)
...+..+...-..+
T Consensus 84 ~~~l~~l~~rw~~L 97 (118)
T 3uul_A 84 QEQMTLLNARWEAL 97 (118)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555544444443
Done!