BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014581
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 189/335 (56%), Gaps = 20/335 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + GL+ NPF + S P T+ ++++RAF+ GWG + KT SLD V NV+PR
Sbjct: 532 DISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIV 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G + G + NIELIS++ + +LKA +PD I+IASIM Y
Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
NK W EL + E +G DA+E+N SCPHGM ER MG A GQD L+ +C W+ +P
Sbjct: 646 NKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEG--YSTPGG 278
+AK+TPN+TDI AR A G++GV+A NT+ +MG+ P P V +T GG
Sbjct: 706 FFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADG-TPWPAVGAGKRTTYGG 764
Query: 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338
S A+ PIAL V +IA+ + + + GG+++ +F+ GA+ +QVC+
Sbjct: 765 VSGTAIRPIALRAVTTIARALPG------FPILATGGIDSAESGLQFLHSGASVLQVCSA 818
Query: 339 VMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
V + +++ C LK + + + ++ + G S
Sbjct: 819 VQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQS 853
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 188/335 (56%), Gaps = 20/335 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + GL+ NPF + S P T+ ++++RAF+ GWG + KT SLD V NV+PR
Sbjct: 532 DISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIV 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G + G + NIELIS++ + +LKA +PD I+IASIM Y
Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
NK W EL + E +G DA+E+N S PHGM ER MG A GQD L+ +C W+ +P
Sbjct: 646 NKNDWMELSRKAEASGADALELNLSAPHGMGERGMGLACGQDPELVRNICRWVRQAVQIP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEG--YSTPGG 278
+AK+TPN+TDI AR A G++GV+A NT+ +MG+ P P V +T GG
Sbjct: 706 FFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADG-TPWPAVGAGKRTTYGG 764
Query: 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338
S A+ PIAL V +IA+ + + + GG+++ +F+ GA+ +QVC+
Sbjct: 765 VSGTAIRPIALRAVTTIARALPG------FPILATGGIDSAESGLQFLHSGASVLQVCSA 818
Query: 339 VMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
V + +++ C LK + + + ++ + G S
Sbjct: 819 VQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQS 853
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 153/327 (46%), Gaps = 35/327 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
LS+ + GL + NP + SG G K G+++ K +L + N TPR A
Sbjct: 7 LSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHP-RFGNPTPRVAE 65
Query: 107 LRAGANGSAKGQIIGWEN--IELISDRPLETMLKEFKQLKALYPDKILIASIM--EEYNK 162
+G + IG +N +E+I M ++ L +P+ +IA++ EE +
Sbjct: 66 TASGMLNA-----IGLQNPGLEVI-------MTEKLPWLNENFPELPIIANVAGSEEADY 113
Query: 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW 222
A I + + AIE+N SCP+ + G A G D + + A + VP++
Sbjct: 114 VAVCAKIG--DAANVKAIELNISCPN---VKHGGQAFGTDPEVAAALVKACKAVSKVPLY 168
Query: 223 AKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282
K++PN+TDI A+ +G++G++ INT+M V DLKT +P + GG S
Sbjct: 169 VKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVR-FDLKTRQPILA----NITGGLSGP 223
Query: 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342
A+ P+AL + +A+ D D + G+GGV D E + GA+ V V T
Sbjct: 224 AIKPVALKLIHQVAQ-------DVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFAD 276
Query: 343 GYGLVKRLCEELKDFMKMHNFSSIEDF 369
+ + ++ ++L + M + S+E
Sbjct: 277 PF-VCPKIIDKLPELMDQYRIESLESL 302
>pdb|1JUB|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JUB|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1OVD|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
pdb|1OVD|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
Length = 311
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 34/332 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L+ T + NPF+ SG ++ GA + K+ +L+ + N PRY
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREG-NPLPRYVD 60
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
L G+ S +G N+ D L+ +LK K+ P IA + N A
Sbjct: 61 LELGSINS-----MGLPNLGF--DYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA--- 110
Query: 167 ELIDRVEETGIDAI-EVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
++ +++E+ I E+N SCP+ E ++ +LL+EV + T P+ K+
Sbjct: 111 -MLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF----TKPLGVKL 165
Query: 226 TP--NITDITEPARVALRSGSEGVSAINTIMSVMGIDLK----TLRPEPCVEGYSTPGGY 279
P ++ A + + V+++N+I + + ID + ++P+ +G+ GG
Sbjct: 166 PPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPK---DGF---GGI 219
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
+ P AL V + +K E + G GG+ETG DA E +L GA +Q+ T +
Sbjct: 220 GGAYIKPTALANVRAFYTRLKPEI-----QIIGTGGIETGQDAFEHLLCGATMLQIGTAL 274
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G + R+ +EL++ M + SI DF G
Sbjct: 275 HKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 34/332 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L+ T + NPF+ SG ++ GA + K+ +L+ + N PRY
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREG-NPLPRYVD 60
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
L G+ S +G N+ D L+ +LK K+ P IA + N A
Sbjct: 61 LELGSINS-----MGLPNLGF--DYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA--- 110
Query: 167 ELIDRVEETGIDAI-EVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
++ +++E+ I E+N SCP+ + ++ +LL+EV + T P+ K+
Sbjct: 111 -MLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFF----TKPLGVKL 165
Query: 226 TP--NITDITEPARVALRSGSEGVSAINTIMSVMGIDLK----TLRPEPCVEGYSTPGGY 279
P ++ A + + V+++N+I + + ID + ++PE +G+ GG
Sbjct: 166 PPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPE---DGF---GGI 219
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
+ P AL V + +K E + G GG+ETG DA E +L GA +Q+ T +
Sbjct: 220 GGAYIKPTALANVRAFYTRLKPEI-----QIIGTGGIETGQDAFEHLLCGATMLQIGTAL 274
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G + R+ +EL++ M + SI DF G
Sbjct: 275 HKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1JRC|A Chain A, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRC|B Chain B, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 34/332 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L+ T + NPF+ SG ++ GA + K+ +L+ + N PRY
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREG-NPLPRYVD 60
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
L G+ S +G N+ D L+ +LK K+ P IA + N A
Sbjct: 61 LELGSIAS-----MGLPNLGF--DYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA--- 110
Query: 167 ELIDRVEETGIDAI-EVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
++ +++E+ I E+N SCP+ + ++ +LL+EV + T P+ K+
Sbjct: 111 -MLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFF----TKPLGVKL 165
Query: 226 TP--NITDITEPARVALRSGSEGVSAINTIMSVMGIDLK----TLRPEPCVEGYSTPGGY 279
P ++ A + + V+++N+I + + ID + ++P+ +G+ GG
Sbjct: 166 PPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPK---DGF---GGI 219
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
+ P AL V + +K E + G GG+ETG DA E +L GA +Q+ T +
Sbjct: 220 GGAYIKPTALANVRAFYTRLKPEI-----QIIGTGGIETGQDAFEHLLCGATMLQIGTAL 274
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G + R+ +EL++ M + SI DF G
Sbjct: 275 HKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1JUE|A Chain A, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|1JUE|B Chain B, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|2BSL|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BSL|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BX7|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
pdb|2BX7|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
Length = 311
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 34/332 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L+ T + NPF+ SG ++ GA + K+ +L+ + N PRY
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREG-NPLPRYVD 60
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
L G+ S +G N+ D L+ +LK K+ P IA + N A
Sbjct: 61 LELGSINS-----MGLPNLGF--DYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA--- 110
Query: 167 ELIDRVEETGIDAI-EVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
++ +++E+ I E+N SCP+ + ++ +LL+EV + T P+ K+
Sbjct: 111 -MLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFF----TKPLGVKL 165
Query: 226 TP--NITDITEPARVALRSGSEGVSAINTIMSVMGIDLK----TLRPEPCVEGYSTPGGY 279
P ++ A + + V+++N+I + + ID + ++P+ +G+ GG
Sbjct: 166 PPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPK---DGF---GGI 219
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
+ P AL V + +K E + G GG+ETG DA E +L GA +Q+ T +
Sbjct: 220 GGAYIKPTALANVRAFYTRLKPEI-----QIIGTGGIETGQDAFEHLLCGATMLQIGTAL 274
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G + R+ +EL++ M + SI DF G
Sbjct: 275 HKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1JQX|A Chain A, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQX|B Chain B, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 34/332 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L+ T + NPF+ SG ++ GA + K+ +L+ + N P Y
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREG-NPLPAYVD 60
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
L G+ S +G N+ D L+ +LK K+ P IA + N A
Sbjct: 61 LELGSINS-----MGLPNLGF--DYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA--- 110
Query: 167 ELIDRVEETGIDAI-EVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
++ +++E+ I E+N SCP+ + ++ +LL+EV + T P+ K+
Sbjct: 111 -MLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFF----TKPLGVKL 165
Query: 226 TP--NITDITEPARVALRSGSEGVSAINTIMSVMGIDLK----TLRPEPCVEGYSTPGGY 279
P ++ A + + V+++N+I + + ID + ++P+ +G+ GG
Sbjct: 166 PPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPK---DGF---GGI 219
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
+ P AL V + +K E + G GG+ETG DA E +L GA +Q+ T +
Sbjct: 220 GGAYIKPTALANVRAFYTRLKPEI-----QIIGTGGIETGQDAFEHLLCGATMLQIGTAL 274
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G + R+ +EL++ M + SI DF G
Sbjct: 275 HKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|1JRB|A Chain A, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRB|B Chain B, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 34/332 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L+ T + NPF+ SG ++ GA + K+ +L+ + N RY
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREG-NPLARYVD 60
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
L G+ S +G N+ D L+ +LK K+ P IA + N A
Sbjct: 61 LELGSINS-----MGLPNLGF--DYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIA--- 110
Query: 167 ELIDRVEETGIDAI-EVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
++ +++E+ I E+N SCP+ + ++ +LL+EV + T P+ K+
Sbjct: 111 -MLKKIQESDFSGITELNLSCPNVPGKPQLAYDFEATEKLLKEVFTFF----TKPLGVKL 165
Query: 226 TP--NITDITEPARVALRSGSEGVSAINTIMSVMGIDLK----TLRPEPCVEGYSTPGGY 279
P ++ A + + V+++N+I + + ID + ++P+ +G+ GG
Sbjct: 166 PPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPK---DGF---GGI 219
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
+ P AL V + +K E + G GG+ETG DA E +L GA +Q+ T +
Sbjct: 220 GGAYIKPTALANVRAFYTRLKPEI-----QIIGTGGIETGQDAFEHLLCGATMLQIGTAL 274
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G + R+ +EL++ M + SI DF G
Sbjct: 275 HKEGPAIFDRIIKELEEIMNQKGYQSIADFHG 306
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 45/300 (15%)
Query: 83 GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKE--- 139
G+ V T +L+ + N PRYA + G+ S +G N+ + T L++
Sbjct: 74 GSFVTXTGTLEE-RAGNPQPRYADTKLGSINS-----MGLPNLGINYYLDYVTELQKQPD 127
Query: 140 ----FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPH--GMPER 193
F L + P++ M E +K ++ L+ E+N SCP+ G P+
Sbjct: 128 SKNHFLSLVGMSPEETHTILXMVEASK--YQGLV-----------ELNLSCPNVPGXPQ- 173
Query: 194 KMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP--NITDITEPARVALRSGSEGVSAIN 251
+ D +++ + T P+ K+ P +I + A + V+ IN
Sbjct: 174 -----IAYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCIN 228
Query: 252 TIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLS 311
+I + + I+ +T+ P G+ GG V P AL V + K + + +
Sbjct: 229 SIGNGLVIEDETVVIXP-KNGF---GGIGGDYVKPTALANVHAFYKRL-----NPSIQII 279
Query: 312 GIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G GGV TG DA E IL GA+ VQ+ T + G + KR+ +EL M + ++EDFRG
Sbjct: 280 GTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEKGYETLEDFRG 339
>pdb|2E68|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E68|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E6A|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6A|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6D|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6D|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6F|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
pdb|2E6F|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
Length = 314
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 147/325 (45%), Gaps = 42/325 (12%)
Query: 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117
NPF+ +G + ++ GA+V+K+ + A + N PRY G+ S
Sbjct: 15 NPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCT-SAPRDGNPEPRYMAFPLGSINSMGL 73
Query: 118 QIIGWE-NIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG 176
+G++ ++ SD L ++ + K L+ + I+ + E N A L +E G
Sbjct: 74 PNLGFDFYLKYASD------LHDYSK-KPLF---LSISGLSVEENVAMVRRLAPVAQEKG 123
Query: 177 IDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDI-- 232
+ +E+N SCP+ G P+ V D + ++ +P KM P DI
Sbjct: 124 V-LLELNLSCPNVPGKPQ------VAYDFEAMRTYLQQVSLAYGLPFGVKMPPYF-DIAH 175
Query: 233 --TEPARVALRSGSEGVSAINTIMSVMGIDLKT----LRPEPCVEGYSTPGGYSCKAVHP 286
T A + + V+ +N++ + + ID ++ ++P+ +G+ GG K + P
Sbjct: 176 FDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPK---QGF---GGLGGKYILP 229
Query: 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346
AL V + + D + G GGV +G DA IL GA+ VQV T + G G+
Sbjct: 230 TALANVNAFYRRCP------DKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGI 283
Query: 347 VKRLCEELKDFMKMHNFSSIEDFRG 371
RL +EL + M + ++E+FRG
Sbjct: 284 FTRLEDELLEIMARKGYRTLEEFRG 308
>pdb|3C3N|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
Length = 312
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 42/325 (12%)
Query: 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117
NPF+ +G + ++ GA+V+K+ + A + N PRY + G+ S
Sbjct: 13 NPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCT-SAPRDGNPEPRYMAVPLGSINSMGL 71
Query: 118 QIIGWE-NIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG 176
+G++ ++ SD L ++ + K L+ + I+ + E N A L +E G
Sbjct: 72 PNLGFDFYLKYASD------LHDYSK-KPLF---LSISGLSVEENVAMVRRLAPVAQEKG 121
Query: 177 IDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDI-- 232
+ +E+N SCP+ G P+ V D + ++ +P KM P DI
Sbjct: 122 V-LLELNLSCPNVPGKPQ------VAYDFEAMRTYLQQVSLAYGLPFGVKMPPYF-DIAH 173
Query: 233 --TEPARVALRSGSEGVSAINTIMSVMGIDLKT----LRPEPCVEGYSTPGGYSCKAVHP 286
T A + + V+ +N++ + + ID ++ ++P+ +G+ GG K + P
Sbjct: 174 FDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPK---QGF---GGLGGKYILP 227
Query: 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346
AL V + + D + G GGV +G DA IL GA+ VQV T + G G+
Sbjct: 228 TALANVNAFYRRCP------DKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGI 281
Query: 347 VKRLCEELKDFMKMHNFSSIEDFRG 371
RL +EL + M + ++E+FRG
Sbjct: 282 FTRLEDELLEIMARKGYRTLEEFRG 306
>pdb|2DJL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJX|A Chain A, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
pdb|2DJX|B Chain B, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
Length = 314
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 146/325 (44%), Gaps = 42/325 (12%)
Query: 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117
NPF+ +G ++ GA+V+K+ + A + N PRY G+ S
Sbjct: 15 NPFMNAAGVLCCTEEDLRCMTASSSGALVSKSCT-SAPRDGNPEPRYMAFPLGSINSMGL 73
Query: 118 QIIGWE-NIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG 176
+G++ ++ SD L ++ + K L+ + I+ + E N A L +E G
Sbjct: 74 PNLGFDFYLKYASD------LHDYSK-KPLF---LSISGLSVEENVAMVRRLAPVAQEKG 123
Query: 177 IDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDI-- 232
+ +E+N SCP+ G P+ V D + ++ +P KM P DI
Sbjct: 124 V-LLELNLSCPNVPGKPQ------VAYDFEAMRTYLQQVSLAYGLPFGVKMPPYF-DIAH 175
Query: 233 --TEPARVALRSGSEGVSAINTIMSVMGIDLKT----LRPEPCVEGYSTPGGYSCKAVHP 286
T A + + V+ +N++ + + ID ++ ++P+ +G+ GG K + P
Sbjct: 176 FDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPK---QGF---GGLGGKYILP 229
Query: 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346
AL V + + D + G GGV +G DA IL GA+ VQV T + G G+
Sbjct: 230 TALANVNAFYRRCP------DKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGI 283
Query: 347 VKRLCEELKDFMKMHNFSSIEDFRG 371
RL +EL + M + ++E+FRG
Sbjct: 284 FTRLEDELLEIMARKGYRTLEEFRG 308
>pdb|2B4G|A Chain A, Dihydroorotate Dehydrogenase
pdb|2B4G|B Chain B, Dihydroorotate Dehydrogenase
pdb|2B4G|C Chain C, Dihydroorotate Dehydrogenase
pdb|2B4G|D Chain D, Dihydroorotate Dehydrogenase
Length = 317
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 40/335 (11%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L + + G + NPF+ +G T ++R + G+++ K+ +L A + N PRY
Sbjct: 7 LKVNILGHEFSNPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTL-APRTGNPEPRYFG 65
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
L G+ S +G N+ + ++ + K L+ + ++ + E + +
Sbjct: 66 LPLGSINS-----MGLPNLGVDFYLSYAAQTHDYSR-KPLF---LSMSGLSVEESVEMVK 116
Query: 167 ELIDRVEETGIDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAK 224
+L+ +E G +E+N SCP+ G P+ VG D ++ +P K
Sbjct: 117 KLVPITKEKGT-ILELNLSCPNVPGKPQ------VGYDFDTTRTYLQKVSEAYGLPFGVK 169
Query: 225 MTPNITDITEPARVALRSGS----EGVSAINTIMSVMGIDLKT----LRPEPCVEGYSTP 276
M P DI A + ++ +N+I + + ID ++P+ +G+
Sbjct: 170 MPPYF-DIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPK---QGF--- 222
Query: 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336
GG K V P AL V + + D + G GGV +G +A IL GA+ VQV
Sbjct: 223 GGLGGKYVLPTALANVNAFFRRCP------DKLVFGCGGVYSGEEAFLHILAGASMVQVG 276
Query: 337 TGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
T + G + RL +EL++ M + ++++FRG
Sbjct: 277 TALHDEGPIIFARLNKELQEIMTNKGYKTLDEFRG 311
>pdb|3GYE|A Chain A, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GYE|B Chain B, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GZ3|A Chain A, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|3GZ3|B Chain B, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|4EF8|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF8|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF9|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
pdb|4EF9|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
Length = 354
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 40/337 (11%)
Query: 46 DLSITVNGLQ--MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
+S+ VN L NPF+ +G T + + G++V+K+ + A + N TPR
Sbjct: 34 SMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCT-PALREGNPTPR 92
Query: 104 YARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA 163
Y L G+ S +G N D L ++ K P + ++ + N
Sbjct: 93 YQALPLGSINS-----MGLPNNGF--DFYLAYAAEQHDYGKK--PLFLSMSGLSMRENVE 143
Query: 164 AWEELIDRVEETGIDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
+ L E G+ +E+N SCP+ G P+ V D + + ++
Sbjct: 144 MCKRLAAVATEKGV-ILELNLSCPNVPGKPQ------VAYDFDAMRQCLTAVSEVYPHSF 196
Query: 222 WAKMTPNITDITEPARVALRS---GSEGVSAINTIMSVMGIDLKT----LRPEPCVEGYS 274
KM P A + + + ++ IN+I + + ID +T ++P+ +G+
Sbjct: 197 GVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPK---QGF- 252
Query: 275 TPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQ 334
GG + V P AL + + + + + G GGV TG DA +L GA+ VQ
Sbjct: 253 --GGLGGRYVLPTALANINAFYRRCPGKL------IFGCGGVYTGEDAFLHVLAGASMVQ 304
Query: 335 VCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
V T + G + +RL EL M + ++++FRG
Sbjct: 305 VGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRG 341
>pdb|3MHU|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MHU|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MJY|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3MJY|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3TQ0|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|3TQ0|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
Length = 346
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 40/337 (11%)
Query: 46 DLSITVNGLQ--MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
+S+ VN L NPF+ +G T + + G++V+K+ + A + N TPR
Sbjct: 34 SMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCT-PALREGNPTPR 92
Query: 104 YARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA 163
Y L G+ S +G N D L ++ K P + ++ + N
Sbjct: 93 YQALPLGSINS-----MGLPNNGF--DFYLAYAAEQHDYGKK--PLFLSMSGLSMRENVE 143
Query: 164 AWEELIDRVEETGIDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
+ L E G+ +E+N SCP+ G P+ V D + + ++
Sbjct: 144 MCKRLAAVATEKGV-ILELNLSCPNVPGKPQ------VAYDFDAMRQCLTAVSEVYPHSF 196
Query: 222 WAKMTPNITDITEPARVALRS---GSEGVSAINTIMSVMGIDLKT----LRPEPCVEGYS 274
KM P A + + + ++ IN+I + + ID +T ++P+ +G+
Sbjct: 197 GVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPK---QGF- 252
Query: 275 TPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQ 334
GG + V P AL + + + + + G GGV TG DA +L GA+ VQ
Sbjct: 253 --GGLGGRYVLPTALANINAFYRRCPGKL------IFGCGGVYTGEDAFLHVLAGASMVQ 304
Query: 335 VCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
V T + G + +RL EL M + ++++FRG
Sbjct: 305 VGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRG 341
>pdb|3TRO|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
pdb|3TRO|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
Length = 354
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 40/337 (11%)
Query: 46 DLSITVNGLQ--MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
+S+ VN L NPF+ +G T + + G++V+K+ + A + N TPR
Sbjct: 34 SMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCT-PALREGNPTPR 92
Query: 104 YARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA 163
Y L G+ S +G N D L ++ K P + ++ + N
Sbjct: 93 YQALPLGSINS-----MGLPNNGF--DFYLAYAAEQHDYGKK--PLFLSMSGLSMRENVE 143
Query: 164 AWEELIDRVEETGIDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
+ L E G+ +E+N SCP+ G P+ V D + + ++
Sbjct: 144 MCKRLAAVATEKGV-ILELNLSCPNVPGKPQ------VAYDFDAMRQCLTAVSEVYPHSF 196
Query: 222 WAKMTPNITDITEPARVALRS---GSEGVSAINTIMSVMGIDLKT----LRPEPCVEGYS 274
KM P A + + + ++ IN+I + + ID +T ++P+ +G+
Sbjct: 197 GVKMPPYFAFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPK---QGF- 252
Query: 275 TPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQ 334
GG + V P AL + + + + + G GGV TG DA +L GA+ VQ
Sbjct: 253 --GGLGGRYVLPTALANINAFYRRCPGKL------IFGCGGVYTGEDAFLHVLAGASMVQ 304
Query: 335 VCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
V T + G + +RL EL M + ++++FRG
Sbjct: 305 VGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRG 341
>pdb|3TJX|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
pdb|3TJX|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
Length = 354
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 40/337 (11%)
Query: 46 DLSITVNGLQ--MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
+S+ VN L NPF+ +G T + + G++V+K+ + A + N TPR
Sbjct: 34 SMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCT-PALREGNPTPR 92
Query: 104 YARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA 163
Y L G+ S +G N D L ++ K P + ++ + N
Sbjct: 93 YQALPLGSINS-----MGLPNNGF--DFYLAYAAEQHDYGKK--PLFLSMSGLSMRENVE 143
Query: 164 AWEELIDRVEETGIDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
+ L E G+ +E+N SCP+ G P+ V D + + ++
Sbjct: 144 MCKRLAAVATEKGV-ILELNLSCPNVPGKPQ------VAYDFDAMRQCLTAVSEVYPHSF 196
Query: 222 WAKMTPNITDITEPARVALRS---GSEGVSAINTIMSVMGIDLKT----LRPEPCVEGYS 274
KM P A + + + ++ IN+I + + ID +T ++P+ +G+
Sbjct: 197 GVKMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPK---QGF- 252
Query: 275 TPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQ 334
GG + V P AL + + + + + G GGV TG DA +L GA+ VQ
Sbjct: 253 --GGLGGRYVLPTALANINAFYRRCPGKL------IFGCGGVYTGEDAFLHVLAGASMVQ 304
Query: 335 VCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
V T + G + +RL EL M + ++++FRG
Sbjct: 305 VGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRG 341
>pdb|3C61|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
pdb|3C61|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Donovani
Length = 314
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 137/323 (42%), Gaps = 38/323 (11%)
Query: 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117
NPF+ +G + + + G++V+K+ + A + N TPRY L G+ S
Sbjct: 15 NPFMNAAGVMCSTTEDLVAMTESASGSLVSKSCT-PALREGNPTPRYRALPLGSINS--- 70
Query: 118 QIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGI 177
+G N D L ++ + P + ++ + N + L E G+
Sbjct: 71 --MGLPNNGF--DFYLAYAAEQHDYGRK--PLFLSMSGLSVRENVEMCKRLAAVATEKGV 124
Query: 178 DAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEP 235
+E+N SCP+ G P+ V D + + ++ KM P
Sbjct: 125 -ILELNLSCPNVPGKPQ------VAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFD 177
Query: 236 ARVALRS---GSEGVSAINTIMSVMGIDLKT----LRPEPCVEGYSTPGGYSCKAVHPIA 288
A + + + ++ IN+I + + ID +T ++P+ +G+ GG + V P A
Sbjct: 178 AAAEILNEFPQVQFITCINSIGNGLVIDAETESVVIKPK---QGF---GGLGGRYVLPTA 231
Query: 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVK 348
L V + + + + G GGV TG DA +L GA+ VQV T + G + +
Sbjct: 232 LANVNAFYRRCPGKL------IFGCGGVYTGEDAFLHVLAGASMVQVGTALHEEGPAIFE 285
Query: 349 RLCEELKDFMKMHNFSSIEDFRG 371
RL EL D M + ++++FRG
Sbjct: 286 RLTAELLDVMAKKGYQTLDEFRG 308
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 19/156 (12%)
Query: 221 VWAKMTPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEG--YSTP 276
V K+ P++T D + A VA G +G+ NT +S RP ++G S
Sbjct: 228 VLVKIAPDLTAQDKEDIASVARELGIDGLIVTNTTVS---------RPV-GLQGALRSET 277
Query: 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336
GG S K + ++ + + + + + G+GGV +G DA E I GA+ VQ+
Sbjct: 278 GGLSGKPLRDLSTQTIREMYALTQGRI-----PIIGVGGVSSGQDALEKIQAGASLVQLY 332
Query: 337 TGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
T ++ G +V R+ EL+ +K F+++ D GA
Sbjct: 333 TALIFLGPPVVVRVKRELEALLKERGFTTVTDAIGA 368
>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
Inhibitor 221290
Length = 365
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 178 DAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV---PVWAKMTPNIT--DI 232
D + VN S P+ R + + RLL +V + V V K+ P++T D
Sbjct: 176 DYLVVNVSSPNTAGLRSLQGKA-ELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 234
Query: 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292
+ A V G +G+ NT +S LR E GG S K + ++ +
Sbjct: 235 EDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSET--------GGLSGKPLRDLSTQTI 286
Query: 293 MSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352
+ + + + G+GGV +G DA E I GA+ VQ+ T + G +V ++
Sbjct: 287 REMYALTQGRV-----PIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKR 341
Query: 353 ELKDFMKMHNFSSIEDFRGA 372
EL+ +K F + D GA
Sbjct: 342 ELEALLKEQGFGGVTDAIGA 361
>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
Length = 395
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 23/202 (11%)
Query: 178 DAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV---PVWAKMTPNIT--DI 232
D + VN S P+ R + + RLL +V + V V K+ P++T D
Sbjct: 206 DYLVVNVSSPNTAGLRSLQGKA-ELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 264
Query: 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEG--YSTPGGYSCKAVHPIALG 290
+ A V G +G+ NT +S RP ++G S GG S K + ++
Sbjct: 265 EDIASVVKELGIDGLIVTNTTVS---------RPA-GLQGALRSETGGLSGKPLRDLSTQ 314
Query: 291 KVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRL 350
+ + + + + G+GGV +G DA E I GA+ VQ+ T + G +V ++
Sbjct: 315 TIREMYALTQGRV-----PIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKV 369
Query: 351 CEELKDFMKMHNFSSIEDFRGA 372
EL+ +K F + D GA
Sbjct: 370 KRELEALLKEQGFGGVTDAIGA 391
>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
Resolution
pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
Resolution
pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
Resolution
pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
Resolution
Length = 390
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 178 DAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV---PVWAKMTPNIT--DI 232
D + VN S P+ R + + RLL +V + V V K+ P++T D
Sbjct: 201 DYLVVNVSSPNTAGLRSLQGKA-ELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 259
Query: 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292
+ A V G +G+ NT +S LR E GG S K + ++ +
Sbjct: 260 EDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSET--------GGLSGKPLRDLSTQTI 311
Query: 293 MSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352
+ + + + G+GGV +G DA E I GA+ VQ+ T + G +V ++
Sbjct: 312 REMYALTQGRV-----PIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKR 366
Query: 353 ELKDFMKMHNFSSIEDFRGA 372
EL+ +K F + D GA
Sbjct: 367 ELEALLKEQGFGGVTDAIGA 386
>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
Inhibitor
Length = 393
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 178 DAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV---PVWAKMTPNIT--DI 232
D + VN S P+ R + + RLL +V + V V K+ P++T D
Sbjct: 204 DYLVVNVSSPNTAGLRSLQGKA-ELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 262
Query: 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292
+ A V G +G+ NT +S LR E GG S K + ++ +
Sbjct: 263 EDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSET--------GGLSGKPLRDLSTQTI 314
Query: 293 MSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352
+ + + + G+GGV +G DA E I GA+ VQ+ T + G +V ++
Sbjct: 315 REMYALTQGRV-----PIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKR 369
Query: 353 ELKDFMKMHNFSSIEDFRGA 372
EL+ +K F + D GA
Sbjct: 370 ELEALLKEQGFGGVTDAIGA 389
>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure In
Complex With Small Molecule Inhibitor
Length = 395
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 178 DAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV---PVWAKMTPNIT--DI 232
D + VN S P+ R + + RLL +V + V V K+ P++T D
Sbjct: 206 DYLVVNVSSPNTAGLRSLQGKA-ELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 264
Query: 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292
+ A V G +G+ NT +S LR E GG S K + ++ +
Sbjct: 265 EDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSET--------GGLSGKPLRDLSTQTI 316
Query: 293 MSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352
+ + + + G+GGV +G DA E I GA+ VQ+ T + G +V ++
Sbjct: 317 REMYALTQGRV-----PIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKR 371
Query: 353 ELKDFMKMHNFSSIEDFRGA 372
EL+ +K F + D GA
Sbjct: 372 ELEALLKEQGFGGVTDAIGA 391
>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 1
pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 2
pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 3
pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 4
pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 5
pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 367
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 178 DAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV---PVWAKMTPNIT--DI 232
D + VN S P+ R + + RLL +V + V V K+ P++T D
Sbjct: 178 DYLVVNVSSPNTAGLRSLQGKA-ELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDK 236
Query: 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292
+ A V G +G+ NT +S LR E GG S K + ++ +
Sbjct: 237 EDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSET--------GGLSGKPLRDLSTQTI 288
Query: 293 MSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352
+ + + + G+GGV +G DA E I GA+ VQ+ T + G +V ++
Sbjct: 289 REMYALTQGRV-----PIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKR 343
Query: 353 ELKDFMKMHNFSSIEDFRGA 372
EL+ +K F + D GA
Sbjct: 344 ELEALLKEQGFGGVTDAIGA 363
>pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|B Chain B, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|D Chain D, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|E Chain E, Escherichia Coli Dihydroorotate Dehydrogenase
Length = 336
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 21/141 (14%)
Query: 219 VPVWAKMTPNITD--ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYST- 275
VP+ K+ P++++ + + A +R +GV A NT + V+G
Sbjct: 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLD-----------RSLVQGXKNC 260
Query: 276 --PGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTV 333
GG S + P+ L K I + + E N + + G+GG+++ A E I GA+ V
Sbjct: 261 DQTGGLSGR---PLQL-KSTEIIRRLSLELNGR-LPIIGVGGIDSVIAAREKIAAGASLV 315
Query: 334 QVCTGVMMHGYGLVKRLCEEL 354
Q+ +G + G L+K + +
Sbjct: 316 QIYSGFIFKGPPLIKEIVTHI 336
>pdb|3I65|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm1
pdb|3I68|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm2
pdb|3I6R|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm74
pdb|3O8A|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Novel Inhibitor Genz667348
Length = 415
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 212 WINAKATVP-VWAKMTPNITD--ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEP 268
W N P V+ K+ P++ E A V L + +G+ NT + D+K+
Sbjct: 262 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQIN--DIKSFE--- 316
Query: 269 CVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL 328
+ GG S + I+ I +M + +K + GG+ +G DA E I
Sbjct: 317 -----NKKGGVSGAKLKDIS---TKFICEMY--NYTNKQIPIIASGGIFSGLDALEKIEA 366
Query: 329 GANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIED 368
GA+ Q+ + ++ +G ++ EL + + ++++
Sbjct: 367 GASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKE 406
>pdb|3SFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Inhibitor Dsm267
Length = 400
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 212 WINAKATVP-VWAKMTPNITD--ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEP 268
W N P V+ K+ P++ E A V L + +G+ NT + D+K+
Sbjct: 247 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQIN--DIKSFE--- 301
Query: 269 CVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL 328
+ GG S + I+ I +M + +K + GG+ +G DA E I
Sbjct: 302 -----NKKGGVSGAKLKDIS---TKFICEMY--NYTNKQIPIIASGGIFSGLDALEKIEA 351
Query: 329 GANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIED 368
GA+ Q+ + ++ +G ++ EL + + ++++
Sbjct: 352 GASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKE 391
>pdb|2ZRU|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRV|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRW|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRX|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRY|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRZ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|3B03|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B04|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B05|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B06|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3VKJ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
Length = 368
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 292 VMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY------- 344
V + A +M+ ++ D L G GG+ +G DAA+ I LGA+ + V+
Sbjct: 252 VPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLE 311
Query: 345 GLVKRLCEELKDFMKMHNFSSIEDFRGASI 374
+++ ELK M + ++ + SI
Sbjct: 312 QFFRKIIFELKAAMMLTGSKDVDALKKTSI 341
>pdb|1TV5|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 443
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 212 WINAKATVP-VWAKMTPNITD--ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEP 268
W N P V+ K+ P++ E A V L + +G+ NT + D+K+
Sbjct: 290 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQIN--DIKSFE--- 344
Query: 269 CVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL 328
+ GG S + I+ I +M + +K + GG+ +G DA E I
Sbjct: 345 -----NKKGGVSGAKLKDIS---TKFICEMY--NYTNKQIPIIASGGIFSGLDALEKIEA 394
Query: 329 GANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIED 368
GA+ Q+ + ++ +G ++ EL + + ++++
Sbjct: 395 GASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKE 434
>pdb|2Y6J|A Chain A, X-2 Engineered Mutated Cbm4-2 Carbohydrate Binding Module
From A Thermostable Rhodothermus Marinus Xylanase
pdb|2Y6K|A Chain A, Xylotetraose Bound To X-2 Engineered Mutated Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6L|A Chain A, Xylopentaose Binding X-2 Engineered Mutated Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
Length = 167
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 38 SDSASAEPDLSITVNGLQMPNPFVIGSGP------PGTNYTVMKRAFDEGWGAVVAKTV- 90
SD+ L++TVNG+ NPF I + PG YT RA E GAVV+ TV
Sbjct: 48 SDAPEGNKVLAVTVNGVGN-NPFNIQATALPVNVRPGVTYTYTIRARAEQDGAVVSFTVG 106
Query: 91 --SLD 93
SLD
Sbjct: 107 NQSLD 111
>pdb|1J7J|A Chain A, Crystal Structure Of The Hprt From Salmonella Typhimurium
pdb|1J7J|B Chain B, Crystal Structure Of The Hprt From Salmonella Typhimurium
Length = 178
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 24 GLRLPSRIGLRVLASDSASAEPDLSITVNGLQMPNPFVIGSG 65
GLR P + + L + E D+ + G +P+ FV+G G
Sbjct: 116 GLREPKSLAICTLLDKPSRREVDVPVEFVGFSIPDEFVVGYG 157
>pdb|2Y64|A Chain A, Xylopentaose Binding Mutated (X-2 L110f) Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6G|A Chain A, Cellopentaose Binding Mutated (X-2 L110f) Cbm4-2
Carbohydrate Binding Module From A Thermostable
Rhodothermus Marinus Xylanase
pdb|2Y6H|A Chain A, X-2 L110f Cbm4-2 Carbohydrate Binding Module From A
Thermostable Rhodothermus Marinus Xylanase
Length = 167
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 38 SDSASAEPDLSITVNGLQMPNPFVIGSGP------PGTNYTVMKRAFDEGWGAVVAKTV 90
SD+ L++TVNG+ NPF I + PG YT RA E GAVV+ TV
Sbjct: 48 SDAPEGNKVLAVTVNGVGN-NPFNIQATALPVNVRPGVTYTYTIRARAEQDGAVVSFTV 105
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 126 ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGID 178
E ++ L+ ++ E+KQL L P + ++A M E N WE LI E+T +
Sbjct: 4 EFMAGTALKRLMAEYKQL-TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFE 55
>pdb|2BK9|A Chain A, Drosophila Melanogaster Globin
Length = 153
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 122 WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIE 181
W I +S P + + QLK + D + AS ++E A W +L+D V AI+
Sbjct: 89 WTKIA-VSHIPRTVSKESYNQLKGVILDVLTAASSLDESQAATWAKLVDHVYAIIFKAID 147
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGID 178
L+ ++ E+KQL L P + ++A M E N WE LI E+T +
Sbjct: 9 LKRLMAEYKQL-TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFE 53
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGID 178
L+ ++ E+KQL L P + ++A M E N WE LI E+T +
Sbjct: 8 LKRLMAEYKQL-TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFE 52
>pdb|2G3H|A Chain A, Cyanide Binding And Heme Cavity Conformational Transitions
In Drosophila Melanogaster Hexa-Coordinate Hemoglobin
Length = 153
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 122 WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRV 172
W I +S P + + QLK + D + AS ++E A W +L+D V
Sbjct: 89 WTKIA-VSHIPRTVSKESYNQLKGVILDVLTAASSLDESQAATWAKLVDHV 138
>pdb|1H3P|H Chain H, Structural Characterisation Of A Monoclonal Antibody
Specific For The Pres1 Region Of The Hepatitis B Virus
Length = 219
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 234 EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG-GYSCKAVHPIALGKV 292
EP V SGS S ++T +V+ DL TL V P +C HP + KV
Sbjct: 151 EPVTVTWNSGSLSSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKV 210
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGID 178
L+ ++ E+KQL L P + ++A M E N WE LI E+T +
Sbjct: 5 LKRLMAEYKQL-TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFE 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,110,853
Number of Sequences: 62578
Number of extensions: 495250
Number of successful extensions: 1397
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1352
Number of HSP's gapped (non-prelim): 55
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)