BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014581
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8X643|PREA_ECO57 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
OS=Escherichia coli O157:H7 GN=preA PE=3 SV=1
Length = 413
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 198/326 (60%), Gaps = 13/326 (3%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
DLSIT G++ PNPF + S P G Y + +A+D GWG VV KT+ A V+PR+
Sbjct: 7 DLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIAN--EVSPRFD 64
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
L G IG++N+E I++ PLE L ++LK YPDK+LIASIM E N+ W
Sbjct: 65 HLVKEDTG-----FIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGE-NEQQW 118
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
EEL V+E G D IE NFSCP M MG+ VGQ L+E+ C + +T+P+ AKM
Sbjct: 119 EELARLVQEAGADMIECNFSCPQ-MTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKM 177
Query: 226 TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285
TPNI D+ E A A R G++G++AINT+ S+ IDL P V G S+ GYS KAV
Sbjct: 178 TPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVK 237
Query: 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 345
PIAL + M++ +D+ +SGIGG+ET DAAEF+LLGA T+QV TG+M +GY
Sbjct: 238 PIAL----RFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYR 293
Query: 346 LVKRLCEELKDFMKMHNFSSIEDFRG 371
+V+ + L ++ F S+++ G
Sbjct: 294 IVEDMASGLSHYLADQGFDSLQEMVG 319
>sp|P25889|PREA_ECOLI NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
OS=Escherichia coli (strain K12) GN=preA PE=1 SV=3
Length = 411
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 198/326 (60%), Gaps = 13/326 (3%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
DLSIT G++ PNPF + S P G Y + +A+D GWG VV KT+ A V+PR+
Sbjct: 5 DLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIAN--EVSPRFD 62
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
L G IG++N+E I++ PLE L ++LK YPDK+LIASIM E N+ W
Sbjct: 63 HLVKEDTG-----FIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGE-NEQQW 116
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
EEL V+E G D IE NFSCP M MG+ VGQ L+E+ C + +T+P+ AKM
Sbjct: 117 EELARLVQEAGADMIECNFSCPQ-MTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKM 175
Query: 226 TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285
TPNI D+ E A A R G++G++AINT+ S+ IDL P V G S+ GYS KAV
Sbjct: 176 TPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVK 235
Query: 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 345
PIAL + M++ +D+ +SGIGG+ET DAAEF+LLGA T+QV TG+M +GY
Sbjct: 236 PIAL----RFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYR 291
Query: 346 LVKRLCEELKDFMKMHNFSSIEDFRG 371
+V+ + L ++ F S+++ G
Sbjct: 292 IVEDMASGLSHYLADQGFDSLQEMVG 317
>sp|Q8ZNL7|PREA_SALTY NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=preA PE=3 SV=1
Length = 411
Score = 255 bits (651), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 198/326 (60%), Gaps = 13/326 (3%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
DLS+T G++ PNPF + S P G Y + +A+D GWG +V KT+ A V+PR+
Sbjct: 5 DLSVTFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGIVFKTIGFFIAN--EVSPRFD 62
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
L G IG++N+E I++ PLE L ++LK YPDK+LIASIM E N+ W
Sbjct: 63 HLTKEDTG-----FIGFKNMEQIAEHPLEENLAAIRRLKQDYPDKVLIASIMGE-NEQQW 116
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
+EL VEE G D IE NFSCP M MG+ VGQ L+E+ C + +++P+ AKM
Sbjct: 117 QELARLVEEAGADMIECNFSCPQ-MTSHAMGSDVGQSPELVEKYCRAVKRGSSLPMLAKM 175
Query: 226 TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285
TPNI D+ E A A R G++G++ INT+ S+ IDL P V G S+ GYS KAV
Sbjct: 176 TPNIGDMCEVALAAKRGGADGIATINTVKSITNIDLNRKIGMPVVNGKSSISGYSGKAVK 235
Query: 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 345
PIAL + + M E +D+ +SGIGG+ET DAAEF+LLGA T+QV TG+M +GY
Sbjct: 236 PIALRFIQQL--RMHPEL--RDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYR 291
Query: 346 LVKRLCEELKDFMKMHNFSSIEDFRG 371
+V+ + L ++ F+S+++ G
Sbjct: 292 IVEDMASGLSHYLADQGFASLQEMIG 317
>sp|Q8CHR6|DPYD_MOUSE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Mus musculus GN=Dpyd
PE=2 SV=1
Length = 1025
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 188/334 (56%), Gaps = 18/334 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + GL+ PNPF + S P T+ +++RAF+ GWG + KT SLD V NV+PR
Sbjct: 532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRII 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G + G + NIELIS++ +LKA +PD ILIASIM Y
Sbjct: 592 R------GTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKADFPDNILIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
NK+ W EL E +G DA+E+N SCPHGM ER MG A GQD L+ +C W+ VP
Sbjct: 646 NKSDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVRVP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPGGY 279
+AK+TPN+TDI AR A G++GV+A NT+ +MG+ T P + +T GG
Sbjct: 706 FFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGIGRRTTYGGV 765
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
S A+ PIAL V +IA+ + + + GG+++ +F+ GA+ +QVC+ +
Sbjct: 766 SGTAIRPIALRAVTAIARALPG------FPILATGGIDSAESGLQFLHSGASVLQVCSAI 819
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
+ +++ C LK + + + + D+ G S
Sbjct: 820 QNQDFTVIEDYCTGLKALLYLKSIEELADWDGQS 853
>sp|Q12882|DPYD_HUMAN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo sapiens GN=DPYD
PE=1 SV=2
Length = 1025
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 190/334 (56%), Gaps = 18/334 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + GL+ NPF + S P T+ ++++RAF+ GWG + KT SLD V NV+PR
Sbjct: 532 DISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRII 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G + G + NIELIS++ + +LKA +PD I+IASIM Y
Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
NK W EL + E++G DA+E+N SCPHGM ER MG A GQD L+ +C W+ +P
Sbjct: 646 NKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPGGY 279
+AK+TPN+TDI AR A G+ GV+A NT+ +MG+ T P + +T GG
Sbjct: 706 FFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAVGIAKRTTYGGV 765
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
S A+ PIAL V SIA+ + + + GG+++ +F+ GA+ +QVC+ +
Sbjct: 766 SGTAIRPIALRAVTSIARALPG------FPILATGGIDSAESGLQFLHSGASVLQVCSAI 819
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
+ +++ C LK + + + ++D+ G S
Sbjct: 820 QNQDFTVIEDYCTGLKALLYLKSIEELQDWDGQS 853
>sp|Q5R895|DPYD_PONAB Dihydropyrimidine dehydrogenase [NADP(+)] OS=Pongo abelii GN=DPYD
PE=2 SV=1
Length = 1025
Score = 232 bits (591), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/334 (37%), Positives = 189/334 (56%), Gaps = 18/334 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + GL+ NPF + S P T+ ++++RAF+ GWG + KT SLD V NV+PR
Sbjct: 532 DISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIV 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G + G + NIELIS++ + +LKA +PD I+IASIM Y
Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
NK W EL + E++G DA+E+N SCPHGM ER MG A GQD L+ +C W+ +P
Sbjct: 646 NKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPGGY 279
+AK+TPN+TDI AR A G+ GV+A NT+ +MG+ T P + +T GG
Sbjct: 706 FFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAVGIAKRTTYGGV 765
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
S A+ PIAL V S A+ + + + GG+++ +F+ GA+ +QVC+ +
Sbjct: 766 SGTAIRPIALRAVTSTARALPG------FPILATGGIDSAESGLQFLHSGASVLQVCSAI 819
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
+ +++ C LK + + + ++D+ G S
Sbjct: 820 QNQDFTVIEDYCTGLKALLYLKSIEELQDWDGQS 853
>sp|O89000|DPYD_RAT Dihydropyrimidine dehydrogenase [NADP(+)] OS=Rattus norvegicus
GN=Dpyd PE=2 SV=1
Length = 1025
Score = 231 bits (589), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 186/335 (55%), Gaps = 20/335 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + GL+ PNPF + S P T+ +++RAF+ GWG + KT SLD V NV+PR
Sbjct: 532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRII 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G + G + NIELIS++ +LKA +PD ILIASIM Y
Sbjct: 592 R------GTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKADFPDNILIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
NK W EL E +G DA+E+N SCPHGM ER MG A GQD L+ +C W+ VP
Sbjct: 646 NKNDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQSVRVP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEG--YSTPGG 278
+AK+TPN+TDI AR A G++GV+A NT+ +MG+ P P V +T GG
Sbjct: 706 FFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADG-SPWPSVGSGKRTTYGG 764
Query: 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338
S + PIAL V +IA+ + + + GG+++ +F+ GA+ +QVC+
Sbjct: 765 VSGTTIRPIALRAVTAIARALPG------FPILATGGIDSAESGLQFLHSGASVLQVCSA 818
Query: 339 VMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
+ + +++ C LK + + + + D+ G S
Sbjct: 819 IQNQDFTVIEDYCTGLKALLYLKSIEELSDWDGQS 853
>sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Danio rerio GN=dpyd
PE=2 SV=1
Length = 1022
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 189/335 (56%), Gaps = 20/335 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + G++ PNPF + S PP T+ +++RAF++GWG + KT LD V NV+PR
Sbjct: 532 DISVEMCGIKFPNPFGLASAPPTTSAAMIRRAFEQGWGFALTKTFGLDKDLVTNVSPRIV 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G I G + NIELIS++ K +LKA +P I+IASIM Y
Sbjct: 592 R------GTTSGHIFGPGQGSFLNIELISEKTAAYWCKSVAELKADFPKNIIIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
N+A W EL +E+ DA+E+N SCPHGM ER MG A GQD L+ +C W+ ++P
Sbjct: 646 NQADWTELAKMAQESQADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRKATSIP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCV--EGYSTPGG 278
+AK+TPN+T+I + A A G++GV+A NT+ +M + P P + +T GG
Sbjct: 706 FFAKLTPNVTNIVDIATAAYEGGADGVTATNTVSGLMALKADA-TPWPGIGRGARTTYGG 764
Query: 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338
S A+ PIAL V +IA+ + + + GG+++ +F+ GA+ +QVC+
Sbjct: 765 VSGNAIRPIALRAVSAIARALPG------FPILATGGIDSAESGLQFLHAGASVLQVCSA 818
Query: 339 VMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
V + +++ C LK + + + + D+ G S
Sbjct: 819 VQNQDFTVIEDYCLGLKALLYLKSIEELHDWDGQS 853
>sp|Q18164|DPYD_CAEEL Dihydropyrimidine dehydrogenase [NADP(+)] OS=Caenorhabditis elegans
GN=dpyd-1 PE=3 SV=2
Length = 1059
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 190/336 (56%), Gaps = 18/336 (5%)
Query: 44 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
E D+S+ + G++ NPF + S PP T+ + +RAF++GWG ++ KT LD V NV+PR
Sbjct: 544 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPR 603
Query: 104 YARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIME 158
R GS G + G + NIELIS++ E L+ ++LK +P KI+IASIM
Sbjct: 604 IVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVIASIMC 657
Query: 159 EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218
YNKA W EL + EE G D +E+N SCPHGM E+ MG A GQ +++E+C W+ A
Sbjct: 658 VYNKADWIELATKSEEAGADILELNLSCPHGMGEKGMGLACGQSPEIVKEICRWVRACVK 717
Query: 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPG 277
+P + KMTPNITD+ E AR A G+ GV+A NT+ S+M + P +T G
Sbjct: 718 IPFFPKMTPNITDVREIARAARDGGASGVTATNTVSSLMHMKADGNAWPAIGSTKRTTYG 777
Query: 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337
G S A+ PIA+ V SIA + + + GG+E+ F++ GA+ +QVC+
Sbjct: 778 GMSGSAIRPIAMKAVSSIANELDG------FPIMATGGIESAETGLGFLMAGASVLQVCS 831
Query: 338 GVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
V + +V C LK + + S++++ G S
Sbjct: 832 AVQNQDFTVVDDYCTGLKALLYLSGAESLKNWDGQS 867
>sp|Q28943|DPYD_PIG Dihydropyrimidine dehydrogenase [NADP(+)] OS=Sus scrofa GN=DPYD
PE=1 SV=1
Length = 1025
Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 189/335 (56%), Gaps = 20/335 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + GL+ NPF + S P T+ ++++RAF+ GWG + KT SLD V NV+PR
Sbjct: 532 DISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIV 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G + G + NIELIS++ + +LKA +PD I+IASIM Y
Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
NK W EL + E +G DA+E+N SCPHGM ER MG A GQD L+ +C W+ +P
Sbjct: 646 NKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEG--YSTPGG 278
+AK+TPN+TDI AR A G++GV+A NT+ +MG+ P P V +T GG
Sbjct: 706 FFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADG-TPWPAVGAGKRTTYGG 764
Query: 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338
S A+ PIAL V +IA+ + + + GG+++ +F+ GA+ +QVC+
Sbjct: 765 VSGTAIRPIALRAVTTIARALPG------FPILATGGIDSAESGLQFLHSGASVLQVCSA 818
Query: 339 VMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
V + +++ C LK + + + ++ + G S
Sbjct: 819 VQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQS 853
>sp|Q28007|DPYD_BOVIN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Bos taurus GN=DPYD
PE=1 SV=1
Length = 1025
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 189/335 (56%), Gaps = 20/335 (5%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + L+ NPF + S P T+ ++++RAF+ GW + KT SLD V NV+PR
Sbjct: 532 DISVEMAALKFTNPFGLASATPTTSSSMIRRAFEAGWAFALTKTFSLDKDIVTNVSPRII 591
Query: 106 RLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY 160
R G+ G + G + NIELIS++ + +LKA +PD I+IASIM Y
Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
N+ W EL + E +G DA+E+N SCPHGM ER MG A GQD L+ +C W+ +P
Sbjct: 646 NRNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVRIP 705
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCV--EGYSTPGG 278
+AK+TPN+TDI AR A G+ GV+A NT+ +MG+ P P V E +T GG
Sbjct: 706 FFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKADG-TPWPAVGREKRTTYGG 764
Query: 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338
S A+ PIAL V +IA+ + ++ + GG+++ +F+ GA+ +QVC+
Sbjct: 765 VSGTAIRPIALRAVTTIARAL------PEFPILATGGIDSAESGLQFLHGGASVLQVCSA 818
Query: 339 VMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
+ + +++ C LK + + + ++D+ G S
Sbjct: 819 IQNQDFTIIQDYCTGLKALLYLKSIEELQDWDGQS 853
>sp|A8XKG6|DPYD_CAEBR Probable dihydropyrimidine dehydrogenase [NADP(+)]
OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2
Length = 1053
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 189/336 (56%), Gaps = 18/336 (5%)
Query: 44 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
E D+S+ + G++ NPF + S PP T+ + +RAF++GWG ++ KT LD V NV+PR
Sbjct: 554 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPR 613
Query: 104 YARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIME 158
R GS G + G + NIELIS++ E L+ ++LK +P KI++ASIM
Sbjct: 614 IVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVVASIMC 667
Query: 159 EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218
YNK W EL + E G D +E+N SCPHGM E+ MG A GQ +++E+C W+ A
Sbjct: 668 VYNKEDWIELATKSEAAGADILELNLSCPHGMGEKGMGLACGQSPEIVKEICRWVRACVK 727
Query: 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLK-TLRPEPCVEGYSTPG 277
+P + KMTPNITD+ E AR A G+ GV+A NT+ S+M + P +T G
Sbjct: 728 IPFFPKMTPNITDVREIARAARDGGASGVTATNTVSSLMHMKADGNAWPAIGNTKRTTYG 787
Query: 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337
G S A+ PIA+ V SIA + + + GG+E+ F++ GA+ +QVC+
Sbjct: 788 GMSGSAIRPIAMKAVSSIANELDG------FPIMATGGIESAETGLGFLMAGASVLQVCS 841
Query: 338 GVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
V + +V+ C LK + + S++++ G S
Sbjct: 842 AVQNQDFTVVEDYCTGLKALLYLSGAESLKEWDGQS 877
>sp|Q55FT1|DPYD_DICDI Dihydropyrimidine dehydrogenase [NADP(+)] OS=Dictyostelium
discoideum GN=pyd1 PE=2 SV=1
Length = 1009
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 186/329 (56%), Gaps = 8/329 (2%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+S+ + G++ PNPF + S P T+ +++R+F++GWG V KT SLD V NV+PR
Sbjct: 530 DISVEMCGMKFPNPFGLASATPATSAAMIRRSFEQGWGFAVTKTFSLDKDLVTNVSPRIV 589
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
R + GQ + NIELIS++ K +LK +PD+I+IASIM +NK W
Sbjct: 590 RGTTSGHHFGPGQG-AFLNIELISEKTCHYWCKAIGELKRDFPDRIVIASIMCGFNKEDW 648
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
+L E +G D IE+N SCPHGM E+ MG A GQD L+ +C W+ A +P +AK+
Sbjct: 649 TQLAKMAEASGADGIELNLSCPHGMGEKGMGLACGQDTELVFHICQWVRAATRLPFFAKL 708
Query: 226 TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKT-LRPEPCVEGYSTPGGYSCKAV 284
TPN+T+I E A+ A G++GV+AINT+ +MG+ + P E +T GG S A
Sbjct: 709 TPNVTEIKEIAKAAHDGGADGVTAINTVSGLMGLKGDSNAWPAIGDEKRTTYGGVSGNAT 768
Query: 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY 344
PIAL V SI K + DY + GG ++ +F+ GA+ VQ+C+ V +
Sbjct: 769 RPIALRAVSSIRKSL------PDYPIMATGGADSADATIQFLHCGASVVQICSSVQNQDF 822
Query: 345 GLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
+V+ LK ++ M + + + G S
Sbjct: 823 TVVQDYITGLKTYLYMQSREDLLQWDGQS 851
>sp|O59185|PYRDB_PYRHO Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=pyrD PE=3 SV=1
Length = 303
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 165/333 (49%), Gaps = 40/333 (12%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L + + G++ NP ++ SG +++RA +EG G VV K++ + K + P
Sbjct: 6 LEVKLFGIRFENPLILASGVVDMTPELLRRAHNEGAGGVVTKSIGKEPRKGYD-NPTIVE 64
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIM----EEYNK 162
L G + GWE L EF + +P +I SI EE+
Sbjct: 65 LPYGLINAMGLPNPGWE-----------AFLNEFIDERFDFP---VIVSIFGGTPEEF-- 108
Query: 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW 222
L +++E DA E+N SCPH + G +GQD + + EV + PV
Sbjct: 109 ---AFLAEKLEPVA-DAFELNLSCPHA---KGYGMEIGQDPKNVYEVVKAVKDVTDKPVI 161
Query: 223 AKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282
AK+TPN+ DIT+ A R G++GVSAINT+ ++ ID+ RP + GGYS
Sbjct: 162 AKLTPNVNDITKLGLAAERGGADGVSAINTVKAI-AIDIYAKRPILS----NKVGGYSGP 216
Query: 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342
+ PIAL V +AK++ D + GIGG+ + DA EF+L GA+ +Q+ T V +
Sbjct: 217 GIKPIALRAVYDLAKVL-------DIPVIGIGGITSWRDAVEFLLAGASALQIGTAVYLR 269
Query: 343 GYGLVKRLCEELKDFMKMHNFSSIEDFRGASIE 375
G+ + K + + +++K FSSI D G +++
Sbjct: 270 GFKVFKEISNGIIEYLKEEGFSSIRDIIGLALK 302
>sp|Q9V0Y6|PYRDB_PYRAB Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pyrD PE=3
SV=2
Length = 299
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 162/331 (48%), Gaps = 36/331 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L + + G++ NP ++ SG +++RA EG G VV K++ ++ K P
Sbjct: 2 LEVNLFGIKFKNPLILASGVVDMTPELLRRAHREGAGGVVTKSIGMEPRKGYE-NPTIVE 60
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
L G + GWE L+EF++ K +P +I SI E
Sbjct: 61 LPYGLINAMGLPNPGWE-----------AFLEEFRKEKFDFP---VIVSIF----GGTPE 102
Query: 167 ELIDRVEETG--IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAK 224
E E+ G DA E+N SCPH + G +GQ + EV + PV AK
Sbjct: 103 EFAFLAEKLGEVADAFELNLSCPHA---KGYGMEIGQKPENVYEVVKAVKDVTDKPVIAK 159
Query: 225 MTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284
+TPN++DI E A ++G++GVSAINT+ ++ ID+ RP + GGYS V
Sbjct: 160 LTPNVSDIRELGLAAEKAGADGVSAINTVKAI-AIDIYAKRPILS----NKFGGYSGPGV 214
Query: 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY 344
PIAL V +A + D + GIGG+ T DA EF+L GA+ +Q+ T V + G+
Sbjct: 215 KPIALRAVYDLASSL-------DIPVIGIGGITTWQDAVEFLLAGASALQIGTAVYLRGF 267
Query: 345 GLVKRLCEELKDFMKMHNFSSIEDFRGASIE 375
+ + + E + ++K +SS+++ G +++
Sbjct: 268 SVFREIAEGISRYLKEEGYSSVKEIIGLALK 298
>sp|O27281|PYRDB_METTH Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=pyrD PE=3 SV=1
Length = 303
Score = 135 bits (339), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 159/329 (48%), Gaps = 38/329 (11%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L ++ +++ NP ++ +G G+ + + R + G GAVV K+ SL P Y
Sbjct: 5 LETSICNIELRNPTILAAGVMGSMASSLNRIYRGGAGAVVTKSFSLRP------NPGY-- 56
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIM----EEYNK 162
R G +I N +S+ +E +E K + P LIAS+ EE+
Sbjct: 57 -RNPTTVEVTGGVI---NAIGLSNPGVEAFREELKLVDEEVP---LIASVYGASPEEFAS 109
Query: 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW 222
AA VEE D IE+N SCPH M GA++GQD L V + VP+
Sbjct: 110 AAAS-----VEEYA-DMIELNVSCPHAM--AGCGASIGQDPELTFRVVSAVKDAVDVPIS 161
Query: 223 AKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282
K+TPN+TDI E A A +GS+ ++ IN++ M ID+KT RP + GG S
Sbjct: 162 TKLTPNVTDIVEIAGSAEEAGSDALTLINSLGPGMKIDIKTARPILS----NAFGGMSGP 217
Query: 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342
A+ P+A+ V + + D + G+GGV DA EF+ GA VQV T +M
Sbjct: 218 AIKPVAVRCVYDV-------YRSVDIPIMGVGGVRDFQDAVEFLFAGARAVQVGTAIMYD 270
Query: 343 GYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G + ++C L+ FM FSS+++ G
Sbjct: 271 GPEVFMKICRGLEAFMMAEGFSSVDEMVG 299
>sp|Q58070|PYRDB_METJA Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pyrD PE=3
SV=1
Length = 306
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 171/329 (51%), Gaps = 28/329 (8%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L + G++ NP + SG G + +KR G GAV K++ L+ + P
Sbjct: 6 LKTNICGIEFKNPVFLASGIMGETGSALKRIAKGGAGAVTTKSIGLNPNPG-HKNPTIVE 64
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
+ G + +G N + D LE + K +L + D +I SI + ++ +
Sbjct: 65 VYGGFLNA-----MGLPNPGV--DEYLEEIEKVRDELNRM--DVRIIGSIYGK-DEEEFA 114
Query: 167 ELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT 226
E+ ++E +D IE+N SCPH + GA +GQ+ L +VC + +PV+AK+T
Sbjct: 115 EVAKKMERY-VDIIELNISCPHA---KGYGATIGQNPDLSYDVCKAVKKAVKIPVFAKLT 170
Query: 227 PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286
PN+TDI E A+ + +G +G+ AINT+ M ID++ +P + GG S KA+
Sbjct: 171 PNVTDIIEIAQAVVDAGVDGLVAINTVRG-MAIDIRAKKPILA----NKFGGLSGKAIKS 225
Query: 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346
I + K++ + + D + G+GG+ +G DA E+++ GA+ VQ+ +GV GY +
Sbjct: 226 IGI-------KVVWDLYENFDVPIIGVGGIMSGEDAIEYMMAGASAVQIGSGVYYRGYDI 278
Query: 347 VKRLCEELKDFMKMHNFSSIEDFRGASIE 375
K++C+E+ F+K N ++E+ G + E
Sbjct: 279 FKKVCDEIISFLKEENL-TLEEIVGMAHE 306
>sp|Q979G6|PYRDB_THEVO Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299
/ JCM 9571 / NBRC 15438 / GSS1) GN=pyrD PE=3 SV=1
Length = 301
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 163/332 (49%), Gaps = 36/332 (10%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDA--AKVINVTPR 103
D+S T+ G+++ NPF++ SG N MK + G AVV K++ + V
Sbjct: 3 DISTTLAGIKLVNPFMVASGILDENGYTMKELLERGAAAVVTKSIGISERDGYPTPVIVE 62
Query: 104 YARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA 163
Y A G +S+ +E +E K + +I S+ YN
Sbjct: 63 YGDSLINAVG--------------LSNPGIENFGEEINIAKE--AKRPIIGSVFA-YNAE 105
Query: 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
+ +L ++EE G+DAIE+N SCPH + G VG D L+E++ I +K VPV+A
Sbjct: 106 EFTKLSVKMEEYGVDAIELNLSCPH---VKGFGLEVGSDPDLVEDIVNEIKSKVKVPVFA 162
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K++PN+++I E A+ A ++ + INT+ + M ID+ + P + GG S A
Sbjct: 163 KLSPNVSNIIEIAKAAEKA--DAYVLINTVKA-MAIDIYSRSPVLS----NLYGGLSGPA 215
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
+ P+ + V + K E + G+GG+ DA E+I+ GA+ VQ+ T + +G
Sbjct: 216 IKPVGIRYVYEVKKETGKE-------IIGVGGISNYKDAIEYIMAGASAVQIGTALYKYG 268
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRGASIE 375
G+ + + +L+ FM F IE+ G +I+
Sbjct: 269 KGIFREMEWQLRTFMDEERFEKIEEMVGVAIK 300
>sp|Q5JHR7|PYRDB_PYRKO Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=pyrD PE=3 SV=1
Length = 302
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 161/334 (48%), Gaps = 42/334 (12%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
LSI ++GL+ NP ++ SG RA +EG G VV K++ ++ K + P
Sbjct: 6 LSINLSGLEFENPLILASGINDKVPEQWIRAHEEGAGGVVTKSIGIEPRKGYD-NPTIVE 64
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYP-DKILIASIM----EEYN 161
L G + GW K F ++ Y D LI SI EE+
Sbjct: 65 LPYGLINAMGLPNPGW---------------KGFLEMVEGYSFDFPLIVSIFGGTPEEFA 109
Query: 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
L +++ E DA E+N SCPH + G +GQ + V + PV
Sbjct: 110 F-----LAEKLSEVA-DAFELNLSCPHA---KGYGMEIGQKPENVYAVVKAVKDATDKPV 160
Query: 222 WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281
AK+TPNI DIT+ A +G++ VSAINT+ ++ ID+ +P + GGYS
Sbjct: 161 IAKLTPNIDDITKLGLAAENAGADAVSAINTLKAI-AIDIYARKPILS----NKVGGYSG 215
Query: 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341
V P+AL V +A+ + D + GIGG+ T DA EF+L GA+ +Q+ T V +
Sbjct: 216 PGVKPVALRAVYDLARTL-------DIPVIGIGGITTWQDAVEFLLAGASALQIGTAVSL 268
Query: 342 HGYGLVKRLCEELKDFMKMHNFSSIEDFRGASIE 375
G+ + + + E ++ +++ FSS+E+ G ++E
Sbjct: 269 RGWKVFREINEGIERYLREEGFSSVEEIVGLALE 302
>sp|C6E6N2|PYRDB_GEOSM Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Geobacter sp. (strain M21) GN=pyrD PE=3 SV=1
Length = 305
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 157/329 (47%), Gaps = 31/329 (9%)
Query: 45 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRY 104
PD+S+ V G++M NP + SG G E GA+++K +SL K N TPR
Sbjct: 4 PDMSVAVAGIKMRNPVMTASGTFGYGAEFADYLDLESIGAMISKGLSLKP-KAGNPTPRI 62
Query: 105 ARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKI-LIASIMEEYNKA 163
G + IG +N+ + D +E L K + P + L + +EEY +
Sbjct: 63 VETPGGMLNA-----IGLQNVGI--DAFIEQKLPYLKNVNT--PVIVNLYGNTLEEYGEV 113
Query: 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
A +D + G+ IEVN SCP+ ++ G G D +EV + + P+
Sbjct: 114 AAR--LDGL--AGVAGIEVNISCPN---VKQGGIVFGTDPGAAQEVVRLVKKNTSKPMIV 166
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K++PN+TD+ A+ +G++ +S INT+ M IDL+ RP + GG S A
Sbjct: 167 KLSPNVTDVVVMAKACADAGADALSLINTLTG-MAIDLERRRPVLA----NVTGGLSGPA 221
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
+ P+AL V + K +K L GIGG+ G DA EF+L GA VQV T +
Sbjct: 222 IKPVALRMVWQVGKAVK-------LPLIGIGGIMNGRDALEFMLAGATAVQVGTASFLDP 274
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+R+ E++ ++ HN S+ GA
Sbjct: 275 SA-AQRIAREMEQYLADHNIESVSSLIGA 302
>sp|B5EFU4|PYRDB_GEOBB Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 /
DSM 16622) GN=pyrD PE=3 SV=1
Length = 305
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 158/329 (48%), Gaps = 31/329 (9%)
Query: 45 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRY 104
PD+S+ V G++M NP + SG G E GA+++K +SL K N TPR
Sbjct: 4 PDMSVAVAGIKMRNPVMTASGTFGYGAEFADYLDLECIGAMISKGLSLKP-KAGNPTPRI 62
Query: 105 ARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKI-LIASIMEEYNKA 163
G + IG +N+ + D +E L K + P + L + +EEY +
Sbjct: 63 VETPGGMLNA-----IGLQNVGI--DAFIEQKLPYLKNVNT--PVIVNLYGNTLEEYGEV 113
Query: 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
A +D + +G+ IEVN SCP+ ++ G G D +EV + T P+
Sbjct: 114 AAR--LDGL--SGVAGIEVNISCPN---VKQGGIVFGTDPGAAQEVVRLVKKNTTKPMIV 166
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K++PN+TD+ A+ +G++ +S INT+ M IDL+ RP + GG S A
Sbjct: 167 KLSPNVTDVVLMAKACADAGADALSLINTLTG-MAIDLERRRPVLA----NVTGGLSGPA 221
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
+ P+AL V +AK +K L GIGG+ G DA EF+L GA VQV T +
Sbjct: 222 IKPVALRMVWQVAKAVK-------LPLIGIGGIMNGRDALEFMLAGATAVQVGTASFLDP 274
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+R+ E++ ++ H S+ GA
Sbjct: 275 SA-AQRIAREMEQYLVDHKIESVSSLIGA 302
>sp|Q9HL35|PYRDB_THEAC Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM
1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=pyrD PE=3
SV=1
Length = 300
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 163/333 (48%), Gaps = 40/333 (12%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
DLS +V G+++ NP ++ SG N M + G AVV K++ ++
Sbjct: 3 DLSTSVAGIRLENPLMLASGILDENGYTMLDVMNNGAAAVVTKSIGMEER---------- 52
Query: 106 RLRAGANGSAKGQIIGWE----NIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYN 161
NG + I+ + N +S+ ++ +E + K K +I S+ +
Sbjct: 53 ------NGYSAPVIVEYGDSLINAVGLSNPGIDNFAEEIRIAKR--SGKPVIGSVFAS-D 103
Query: 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
++ L +++E G DA+E+N SCPH + G VG D L+E++ + +K +VPV
Sbjct: 104 AESFVNLGRKMQEYGCDAVELNLSCPH---VKGFGLEVGSDPDLVEDIVNEMKSKISVPV 160
Query: 222 WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281
+AK++PN++DI E A+ A ++ + INT+ + M ID++ P Y GG S
Sbjct: 161 FAKLSPNVSDIIEIAKAAEKA--DAYVLINTVKA-MKIDIRARMP-VLTNAY---GGLSG 213
Query: 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341
A+ P+ + V + K + + G+GG+ T DA E+I+ GA+ VQ+ T +
Sbjct: 214 PAIKPVGVRYVYEVKK-------ETGKDIIGVGGITTYEDAVEYIMAGASAVQIGTALYT 266
Query: 342 HGYGLVKRLCEELKDFMKMHNFSSIEDFRGASI 374
G + + + ++ FM F SI+D G +I
Sbjct: 267 VGKSVFRNIISQMNTFMDDEKFHSIQDMVGVAI 299
>sp|Q8U0P6|PYRDB_PYRFU Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=pyrD PE=3 SV=1
Length = 300
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 161/325 (49%), Gaps = 32/325 (9%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
+ I + G+ NP ++ SG +++RA EG G VV K++ ++ K + P
Sbjct: 3 IKIELFGITFENPLILASGVVDMTPELLRRAHKEGAGGVVTKSIGIEPRKGYD-NPTVVE 61
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWE 166
+ G + GW+ L+EF++ +P +I SI N +
Sbjct: 62 VPCGLINAMGLPNPGWK-----------AFLEEFEKESFDFP---VIVSIFGG-NPEEFA 106
Query: 167 ELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT 226
L +++E G DA E+N SCPH + G +GQD + V + PV AK+T
Sbjct: 107 FLAEKLERVG-DAFELNLSCPHA---KGYGLEIGQDPENVYRVVKAVKDVTDKPVIAKLT 162
Query: 227 PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286
PN +DIT+ A ++ ++GVSAINT+ ++ ID+ RP + GGYS + P
Sbjct: 163 PNTSDITKLGLAAEKAEADGVSAINTLKAI-AIDIYAKRPILS----NKFGGYSGPGIKP 217
Query: 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346
IAL V +A + D + GIGG+ T DA EF+L GA+ VQ+ T V + G+ +
Sbjct: 218 IALRAVYDLASKL-------DIPIIGIGGITTWQDAVEFLLAGASAVQIGTAVYLKGFSV 270
Query: 347 VKRLCEELKDFMKMHNFSSIEDFRG 371
+ + E ++ +++ FSS+++ G
Sbjct: 271 FREIAEGIRKYLEEEGFSSVKEIIG 295
>sp|A4J560|PYRDB_DESRM Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Desulfotomaculum reducens (strain MI-1) GN=pyrD PE=3
SV=1
Length = 304
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 158/329 (48%), Gaps = 31/329 (9%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
+L++ + L M NP SG G GA+V K +L+ + N TPR
Sbjct: 4 NLAVKIGQLDMINPVTTASGTFGYGQEYSPYVDLNQLGAIVVKGTTLEPREG-NPTPRLV 62
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
+G S IG +N + D LE + FK+L+ I + EEY
Sbjct: 63 ETPSGILNS-----IGLQNSGV--DYLLEHYVPFFKKLQTNVIVNIS-GNTAEEYG---- 110
Query: 166 EELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAK 224
+L R++E GI A+EVN SCP+ +K G A G D R EV + +PV K
Sbjct: 111 -QLAARLDEADGIAALEVNISCPN---VKKGGMAFGGDFRTAAEVTKVVKNSTALPVIVK 166
Query: 225 MTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284
++PN+TDI E AR +G++G+S INT++ M ID++ +P V G +T GG S AV
Sbjct: 167 LSPNVTDIAEIARAVEGAGADGLSVINTLLG-MAIDVRKRKP---VLG-NTMGGLSGPAV 221
Query: 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY 344
P+AL V + K + + G+GG+ DA EFIL GA V V T ++ Y
Sbjct: 222 KPVALRAVWQVYKAVH-------IPIIGMGGIMNATDALEFILAGAQAVSVGTANFVNPY 274
Query: 345 GLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
K + + ++ ++ + I + GA+
Sbjct: 275 A-TKEIIQGMEKYLMENGIGDINELVGAA 302
>sp|A6TVS0|PYRDB_ALKMQ Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Alkaliphilus metalliredigens (strain QYMF) GN=pyrD
PE=3 SV=1
Length = 302
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 165/330 (50%), Gaps = 36/330 (10%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
++ + + G+++ NP + SG G+ + GAVV K V+ + K N +PR A
Sbjct: 5 NMKVNIAGVELKNPVMTASGTFGSGREYGEYVDLNQLGAVVVKGVANEPWKG-NPSPRIA 63
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILI---ASIMEEYNK 162
G S +G +N + D +E + +Q Y KI++ +E+Y
Sbjct: 64 ETYGGMLNS-----VGLQNPGV--DEFIEKDIPFLRQ----YNTKIIVNIAGRTIEDYC- 111
Query: 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW 222
E++ ++ + +D +E+N SCP+ + G G D ++EEV + A P+
Sbjct: 112 ----EVVKKLGDADVDLLELNISCPN---VKAGGVCFGTDPFMVEEVTKAVKKVAKQPLI 164
Query: 223 AKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282
K+TPN+TDI A+ A+ G++G+S INT++ M ID+ +P + GG+S
Sbjct: 165 VKLTPNVTDIVPIAKAAVAGGADGISLINTLLG-MAIDIHKRKPILA----NVMGGFSGP 219
Query: 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342
A+ P+AL V +A N D + G+GG+ TG DA EFIL GA+ V V T ++
Sbjct: 220 AIKPVALRMVYQVA-------NAVDVPIIGMGGIMTGEDAVEFILAGASGVAVGTANFIN 272
Query: 343 GYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+ + E ++ +M+ ++ +++ RG+
Sbjct: 273 PRATID-VIEGIQGYMEQYSIKDLKEIRGS 301
>sp|B9M211|PYRDB_GEOSF Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Geobacter sp. (strain FRC-32) GN=pyrD PE=3 SV=1
Length = 305
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 160/331 (48%), Gaps = 31/331 (9%)
Query: 43 AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTP 102
A+PDLS+ ++G+++ NP + SG G E GA++ K +SL K N TP
Sbjct: 2 AKPDLSVEISGIKLRNPVMTASGTFGYGKEFSDYLDLEKIGAIITKGLSLRP-KAGNPTP 60
Query: 103 RYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKI-LIASIMEEYN 161
R G + IG +N+ + D + L + + P + L + +EEY
Sbjct: 61 RIVETPGGMLNA-----IGLQNVGI--DAFIGEKLPFLRTVDT--PVIVNLYGNTLEEYG 111
Query: 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
+ A E +DR+ E + +EVN SCP+ ++ G G D EV G + + P+
Sbjct: 112 ELA--EKLDRLPE--VAGLEVNISCPN---VKQGGIVFGTDPNAAAEVVGLVRRSTSKPL 164
Query: 222 WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281
K++PN+TD+ A + +G++ +S INT+ M IDL+ RP + GG S
Sbjct: 165 IIKLSPNVTDVVRMADACVNAGADALSLINTLTG-MAIDLQKRRPILA----NITGGLSG 219
Query: 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341
A+ P+AL V +++ M + GIGG+ + DA EF+L GA VQV T +
Sbjct: 220 PAIKPVALRMVWQVSQAMA-------VPIIGIGGIMSATDALEFMLAGATAVQVGTANFL 272
Query: 342 HGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+ + ++D++ + S +++ GA
Sbjct: 273 DPSA-AQTIAAGIEDYLAKNGISDVKELIGA 302
>sp|A8MIU4|PYRDB_ALKOO Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Alkaliphilus oremlandii (strain OhILAs) GN=pyrD PE=3
SV=1
Length = 302
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 156/326 (47%), Gaps = 30/326 (9%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
++ + + G+Q+ NP + SG G+ + GAVV K V+ + N TPR A
Sbjct: 5 NMGVHIAGIQLKNPVMTASGTFGSGREYSEFVDLNQLGAVVVKGVANEPWSG-NPTPRIA 63
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
G S +G +N +E +K+ Q Y KI++ + A +
Sbjct: 64 ETYGGMLNS-----VGLQN------PGVEAFIKDDIQFLRQYDTKIIVN--IAGRTVADY 110
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
++ +++ + ID IE+N SCP+ + G G + ++EEV + A P+ K+
Sbjct: 111 CKVTEKLGDADIDLIELNISCPN---VKAGGVNFGTNPAMVEEVTKAVKKVARQPLIVKL 167
Query: 226 TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285
TPN+TDI E A+ A+ G++ +S INT++ M ID+ +P + GG S A+
Sbjct: 168 TPNVTDIVEIAKAAVAGGADAISLINTLLG-MAIDIHGRKPILA----NVVGGLSGPAIK 222
Query: 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 345
P+AL V +A N + G+GG+ TG DA F+L GA V V T M+
Sbjct: 223 PVALRMVYQVA-------NAVQVPIIGMGGIATGEDAIAFMLAGATGVAVGTANFMNPRA 275
Query: 346 LVKRLCEELKDFMKMHNFSSIEDFRG 371
++ L E ++D+M +N I + G
Sbjct: 276 TMEVL-EGIEDYMDQYNIEDIHEIIG 300
>sp|A8YVZ9|PYRDA_LACH4 Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
helveticus (strain DPC 4571) GN=pyrD PE=3 SV=1
Length = 307
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 163/328 (49%), Gaps = 36/328 (10%)
Query: 49 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARL 107
+ + GL + NP + SG G + FD GA+V KT + A N P+ A L
Sbjct: 6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTT-PHATTGNPQPQIAIL 64
Query: 108 RAGANGSAKGQIIGWENI---ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAA 164
G S +G N ++IS++ +L+ YPD ++AS+ + ++
Sbjct: 65 EDGVLNS-----VGLTNPGVDQVISEK--------LTKLRHQYPDLPIMASVGGD-SEDD 110
Query: 165 WEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
+ E+ ++ +G ++A+E+N SCP+ + G + G ++EE+ I +P++
Sbjct: 111 YVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYV 167
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K+TPN+TDI E A+ A G++G+S INT++ M ID+KT +P + G++ GG S +A
Sbjct: 168 KLTPNVTDIVEIAKAAESGGADGISMINTLLG-MRIDIKTRKP---LLGHNM-GGLSGEA 222
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
V PIA+ + + ++ + + G+GG+ T D EFIL GAN V V +
Sbjct: 223 VKPIAIRMISQVRQVTQ-------LPIIGMGGISTAQDVIEFILAGANAVAVGSAHFEDE 275
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRG 371
K + EEL ++ I D G
Sbjct: 276 LA-AKHIVEELPAELEKLGVEDINDLVG 302
>sp|Q74J29|PYRDA_LACJO Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=pyrD
PE=3 SV=1
Length = 307
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 153/288 (53%), Gaps = 31/288 (10%)
Query: 53 GLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGA 111
GL + NP + SG G + F+ GA+V KT + + N P+ A L G
Sbjct: 10 GLDLKNPIMPASGTFGFGDVPAAKKFNLNDLGAMVIKTTT-PHSTTGNPQPQIAVLNTGV 68
Query: 112 NGSAKGQIIGWENIELISDRPLETMLKE-FKQLKALYPDKILIASIMEEYNKAAWEELID 170
S +G N ++ ++K+ L++ YP+ ++AS+ E ++A + E+
Sbjct: 69 LNS-----VGLTN------PGVDAVIKDKLTPLRSEYPNLPIMASVGGE-DEAGYLEVAK 116
Query: 171 RVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNI 229
++ ++G ++A+E+N SCP+ + G + G ++EE+ I + +P++ K+TPN+
Sbjct: 117 KLSDSGLVNALEINVSCPN---VNQGGMSFGVHPDVVEELTKKIKSLVKIPIYVKLTPNV 173
Query: 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289
TDIT+ A+ A G++G+S INT++ M ID++T +P V G++ GG S +AV PIA+
Sbjct: 174 TDITQIAKAAENGGADGLSLINTLLG-MEIDVETRKP---VLGHNI-GGLSGEAVKPIAI 228
Query: 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337
+M+ + G+GG+ + D EFIL GAN V V T
Sbjct: 229 -------RMVHQVRESTTLPIIGMGGISSAKDVIEFILAGANAVAVGT 269
>sp|Q8PW56|PYRDB_METMA Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=pyrD PE=3 SV=1
Length = 314
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 155/330 (46%), Gaps = 31/330 (9%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGW-GAVVAKTVSLDAAKVINVTPRYA 105
L T+ GL++ NP ++ +G GT + R EG GAVV K++ A K + P
Sbjct: 13 LMYTLTGLKLKNPTILAAGVLGTTGASLCRVAREGGAGAVVTKSIG-PAPKTGHPNPSMI 71
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
L G + N + + L+E + K D +IASI + +
Sbjct: 72 ELDCG-----------FLNAMGLPNPSYPGFLQELEFAKE-NSDAPVIASIFGG-TPSEF 118
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
E+ + + DA E+N SCPH GAA+G + L+E V + VPVW K+
Sbjct: 119 AEVAEGLLPAKPDAFELNVSCPHA---EGYGAAIGSNPCLVEAVTAAVKDVVNVPVWVKL 175
Query: 226 TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285
TPN+ DIT A G++ V AINT+ M ID+++ P V G + GG S KAV
Sbjct: 176 TPNVADITCIGNAAESGGADAVVAINTVKG-MAIDIESGYP---VLGNRS-GGLSGKAVK 230
Query: 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 345
P+A+ K + F + + G+GGV + DA E I+ GA VQV + V G
Sbjct: 231 PVAV-------KCVYDLFTALEIPVIGVGGVSSWEDAVEMIMAGAAAVQVGSAVYDR-VG 282
Query: 346 LVKRLCEELKDFMKMHNFSSIEDFRGASIE 375
+ + + ++ F+K +S I+ G + E
Sbjct: 283 IFSEIGKGIEAFLKRKGYSDIKKITGLAHE 312
>sp|B1GYY3|PYRDB_UNCTG Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Uncultured termite group 1 bacterium phylotype Rs-D17
GN=pyrD PE=3 SV=1
Length = 306
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 164/332 (49%), Gaps = 41/332 (12%)
Query: 45 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRY 104
PDLS+ G+++ NP + SG G Y + + G VV KTV+L+ + N+ PR
Sbjct: 3 PDLSVNFAGIKLKNPVLTASGTFGYGYELADLIPLKRLGGVVTKTVTLEP-RAGNLQPRI 61
Query: 105 ARLRAGANGSAKGQIIGWENIEL--ISDRPLETMLKEFKQLKALYPDKILIASIMEEYNK 162
A + +G S IG +NI + + PLE + +KI + I+
Sbjct: 62 AEVASGILNS-----IGLQNIGVRAFIEEPLEKL------------NKIGVPVIVSVAGV 104
Query: 163 AAWE--ELIDRVE-ETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219
A E E++ + + G+ AIE+N SCP+ ++K+ V D L+ +V + + V
Sbjct: 105 AVGEYVEIVKILSSQNGVSAIELNLSCPN--LKKKI---VCHDLPLMRDVIRGVKKVSRV 159
Query: 220 PVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279
PV AK++P +TDI+E A A +G++GV+ NT M +D++T +P+ + GG
Sbjct: 160 PVIAKLSPLVTDISELALTAQNAGADGVTLTNT-YPAMAVDIRTFKPKLS----TVKGGM 214
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
S + P+++ + + + D + G GG+ G DA EFIL GA V V +
Sbjct: 215 SGACIKPMSV-------RCVYDAYQDIKIPIIGCGGIMMGEDAVEFILAGATAVSVGSSS 267
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
++ L+ + + ++D +K N S++ G
Sbjct: 268 LVSPGNLIA-IIDGIEDILKEKNIKSVKKIIG 298
>sp|C6BW12|PYRDB_DESAD Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM
2638 / NCIB 8403 / VKM B-1763) GN=pyrD PE=3 SV=1
Length = 305
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 155/328 (47%), Gaps = 30/328 (9%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D+SI GL++ NP + SG G + E G +V K +SL + N PR A
Sbjct: 2 DVSIDFAGLKLKNPILTASGTFGFGLEFQRYGDLESLGGIVVKGLSLKPREG-NPMPRIA 60
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
G + Q G E E I+ + + K L LY A+ EE+ + A
Sbjct: 61 ETPCGMLNAIGIQNPGVE--EFINKKLPKLPWKTLPVLANLY------ATDAEEFGELAG 112
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAK 224
E G+ A+EVN SCP+ ++ G A GQD + + +V + A P+ K
Sbjct: 113 V----LAGEEGVAALEVNVSCPN---VKEGGIAFGQDPKQITKVAEAVKKNAGNKPIIIK 165
Query: 225 MTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284
++PN+TDIT A+ A G++ +S INT +S M +D++ P + GG S AV
Sbjct: 166 LSPNVTDITVCAKAAEDGGADALSLINT-LSGMAVDIERRTPRLA----NVIGGLSGPAV 220
Query: 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY 344
P+AL V +K + G+GG+ T DAAEF+L+GA VQ+ TG +
Sbjct: 221 KPVALRCVYQTVNAVK-------IPVMGLGGITTAEDAAEFLLVGAKAVQIGTGNFLS-P 272
Query: 345 GLVKRLCEELKDFMKMHNFSSIEDFRGA 372
R+ EEL ++ S+++F G+
Sbjct: 273 DTAFRIAEELPKVLERVKAESLDEFIGS 300
>sp|A9KKR5|PYRDB_CLOPH Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
18823 / ISDg) GN=pyrD PE=3 SV=1
Length = 300
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 157/328 (47%), Gaps = 34/328 (10%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
+ ++T+ G+ NP SG G+ + GA+ K VS N PR A
Sbjct: 2 NTNVTIAGVTFKNPVTTASGTFGSGMEYSEFVDLNRLGAITTKGVS-SVPWPGNPVPRIA 60
Query: 106 RLRAGANGSAKGQIIGWEN--IELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA 163
G + IG +N +++ +R L LK+F D +I ++ + K
Sbjct: 61 ETYGGMLNA-----IGLQNPGVDMFVERDL-AFLKQF--------DTKVIVNVCGKSVKE 106
Query: 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
+ E+++R+ E +D +E+N SCP+ ++ A GQD +++ + I A PV
Sbjct: 107 -YVEVVERLSEEAVDLLELNISCPN---VKEGCIAFGQDPKMIAMIMDEIKRHAKQPVIV 162
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K++PN+TDITE A+ A G++ +S INT+ M ID+ + GG S A
Sbjct: 163 KLSPNVTDITEMAKAAEAGGADALSLINTLTG-MKIDIN----HRAFAIANKTGGMSGPA 217
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
V PIA+ V +A +K + G+GG++ DA EFI+ GA V V T ++
Sbjct: 218 VKPIAVRMVYQVANAVK-------LPIIGMGGIQNAEDALEFIMAGATVVAVGTANFINP 270
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRG 371
Y V+ + E +++FM+ + S I D G
Sbjct: 271 YATVE-VIEGIEEFMRKNQISDINDLIG 297
>sp|Q39UK4|PYRDB_GEOMG Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
/ DSM 7210) GN=pyrD PE=3 SV=1
Length = 305
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 159/333 (47%), Gaps = 39/333 (11%)
Query: 45 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRY 104
PDLS+ + G+++ NP + SG G E GA++ K +SL K N TPR
Sbjct: 4 PDLSVEIAGIKLRNPVMTASGTFGYGEEFAAYVNLEKIGAIITKGLSLKP-KAGNPTPRI 62
Query: 105 ARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKIL--IASIMEEYNK 162
G + IG +N+ + D +E K+ L+ + I+ + +EEY +
Sbjct: 63 QETTGGMLNA-----IGLQNVGI--DAFIE---KKVPFLRTVNTPAIVNFFGNTVEEYAE 112
Query: 163 AAWEELIDRVEETGIDAIEVNFSCP---HGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219
A E +D++ E + +E+N SCP HG G G + + V +
Sbjct: 113 LA--ERLDKIPE--VAGMEINISCPNVKHG------GIVFGTEPKAAYSVVKAVREATIK 162
Query: 220 PVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279
PV K++PN+TDI E A + ++ +S INT+ M IDLK+ RP + GG
Sbjct: 163 PVIVKLSPNVTDIVEMAWACADAEADALSLINTLTG-MAIDLKSRRPILA----NVTGGL 217
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
S AV P+AL V +AK +K + GIGG+ +G DA EF+L GA VQV T
Sbjct: 218 SGPAVKPVALRMVWQVAKAVK-------IPVIGIGGIMSGTDALEFMLAGATAVQVGTAN 270
Query: 340 MMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+ +R+ E++ ++ + + +++ GA
Sbjct: 271 FLDPAA-SERIAAEMEQYLVNNGITDVKELIGA 302
>sp|A5G3H0|PYRDB_GEOUR Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Geobacter uraniireducens (strain Rf4) GN=pyrD PE=3
SV=1
Length = 305
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 161/332 (48%), Gaps = 31/332 (9%)
Query: 44 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
+PDLS+ V G+++ NP + SG G E GA++ K +S+ K N TPR
Sbjct: 3 KPDLSVEVAGIKLRNPVMTASGTFGYGKEFADYLDLEKIGAIITKGLSIRP-KAGNPTPR 61
Query: 104 YARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKI-LIASIMEEYNK 162
G + IG +N+ + D ++ L + + P + L + +EEY +
Sbjct: 62 IVETPGGMLNA-----IGLQNVGI--DAFIQEKLPFLRTVNT--PVIVNLYGNTLEEYGE 112
Query: 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW 222
A E +D++ E + +EVN SCP+ ++ G G D EV + P+
Sbjct: 113 LA--EKLDKLPE--VAGLEVNISCPN---VKQGGIVFGTDPNAAYEVVSLVRESTIKPLI 165
Query: 223 AKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282
K++PN+T++ E A + +G++ +S INT+ M IDL+ RP + GG S
Sbjct: 166 VKLSPNVTNVVEMANACVDAGADALSLINTLTG-MAIDLQKRRPILA----NMTGGLSGP 220
Query: 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342
A+ P+AL V +A+ +K + GIGG+ T DA EF+L GA VQV T +
Sbjct: 221 AIKPVALRMVWQVAQAVK-------VPVIGIGGIMTATDALEFMLAGATAVQVGTANFLD 273
Query: 343 GYGLVKRLCEELKDFMKMHNFSSIEDFRGASI 374
+ + E ++ +++ + + +++ GA I
Sbjct: 274 PSA-AQTIAEGMETYLEENGIADVKELIGALI 304
>sp|Q97R65|PYRDB_STRPN Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=pyrDB PE=3 SV=1
Length = 312
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 159/329 (48%), Gaps = 35/329 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L +++ GL + NP + SG G K + G+++ K +L+ + N TPR A
Sbjct: 6 LQVSLPGLDLKNPIIPASGCFGFGQEYAKYYDLDLLGSIMIKATTLEP-RFGNPTPRVAE 64
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKE-FKQLKALYPDKILIASIM----EEYN 161
AG + IG +N LE +L E L+ YP+ +IA++ +EY
Sbjct: 65 TPAGMLNA-----IGLQN------PGLEVVLAEKLPWLEREYPNLPIIANVAGFSKQEY- 112
Query: 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
AA I + T + AIE+N SCP+ + G +GQD L +V + VPV
Sbjct: 113 -AAVSHGISKA--TNVKAIELNISCPN-VDHCNHGLLIGQDPDLAYDVVKAAVEASEVPV 168
Query: 222 WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281
+ K+TP++TDI A+ A +G+ G++ INT++ M DLKT +P + T GG S
Sbjct: 169 YVKLTPSVTDIVTVAKAAEDAGASGLTMINTLVG-MRFDLKTRKP---ILANGT-GGMSG 223
Query: 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341
AV P+AL K+++ D + G+GGV++ A E L GA+ + V T
Sbjct: 224 PAVFPVAL-------KLIRQVAQTTDLPIIGMGGVDSAEAALEMYLAGASAIGVGTANFT 276
Query: 342 HGYGLVKRLCEELKDFMKMHNFSSIEDFR 370
+ Y + E L M + SS+E+ R
Sbjct: 277 NPYA-CPDIIENLPKVMDKYGISSLEELR 304
>sp|O66461|PYRDA_AQUAE Putative dihydroorotate dehydrogenase A (fumarate) OS=Aquifex
aeolicus (strain VF5) GN=pyrD PE=3 SV=1
Length = 306
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 157/330 (47%), Gaps = 40/330 (12%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
DLS+ + G++ NP + SG G + GAVV K +SL ++ N TPR
Sbjct: 2 DLSVELFGIRFKNPVWVASGTFGYGVEAAEIYDISKLGAVVTKGLSLKE-RLGNETPRIV 60
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYP-----DKILIASIMEEY 160
G S Q G E K LK +YP D IA++ E
Sbjct: 61 ETPCGMLNSIGLQNPGVE-----------------KFLKEIYPKIKDVDTHFIANVFGET 103
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
+ E + + I A E+N SCP+ +K G G D +L + I AK P
Sbjct: 104 EEEYVEVCMALEDADKIVAYELNVSCPN---VKKGGILFGHDPVILGNLVDRIKAKIKKP 160
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYS 280
+ K++PN+TD+TE A+V + +G++G+ INT+M M I++ +P+ + GG S
Sbjct: 161 LLVKLSPNVTDVTEFAKVCIENGADGLVLINTLMG-MKINIWKRKPDLA----TKTGGLS 215
Query: 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340
A+ PIA+ + + + +F D+ + G+GG+ T DA E ++ GA+ VQV T
Sbjct: 216 GPAILPIAVRMIYQVYE----KFGDR-IPIIGVGGITTWEDAMEHVMAGASAVQVGTANF 270
Query: 341 MHGYGLVKRLCEELKDFMKMHNFSSIEDFR 370
+K + E +++FMK N I+DF+
Sbjct: 271 YEPLAPLK-VIEGIENFMKSQN---IKDFK 296
>sp|B9MS26|PYRDB_CALBD Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /
DSM 6725 / Z-1320) GN=pyrD PE=3 SV=1
Length = 300
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 162/329 (49%), Gaps = 35/329 (10%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
+L + + G+++ NP + SG G K +GA+ K ++L ++ N PR
Sbjct: 2 NLEVEIAGIKLKNPVIAASGTFGFGREYSKLIDISEFGAICTKGITLKK-RIGNPQPRLC 60
Query: 106 RLRAGANGSAKGQIIGWEN--IELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA 163
+ AG S +G EN +E + L LK F D +IA+I ++K
Sbjct: 61 EVYAGIINS-----VGLENPGVEAFINDEL-PFLKSF--------DTKIIANI-NGFSKE 105
Query: 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
+ EL ++ + +D IEVN SCP+ ++ G G+D + + E+ + A+ P+
Sbjct: 106 EFVEL-TKILTSLVDMIEVNLSCPN---VKEGGMVFGKDPKKVYEITKSVKDVASCPIIV 161
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K+TPN+TDIT+ A A +G++ +S INT+ S M ID++T +P + GG S A
Sbjct: 162 KLTPNVTDITQLAVAAENAGADAISLINTV-SAMAIDIETRKPLIKM----VTGGLSGPA 216
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
+ PIA+ +M+ F + G+GG+ DA EF + GA +Q+ T V
Sbjct: 217 IKPIAV-------RMVYECFKKVRIPIIGMGGIMNYKDAIEFFIAGATAIQIGT-VNFIN 268
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
V + E ++ +++ F SI++ G+
Sbjct: 269 PKAVCEIKEGIEAYLERKGFKSIKELVGS 297
>sp|Q8DQ37|PYRDB_STRR6 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
GN=pyrDB PE=3 SV=2
Length = 312
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 158/329 (48%), Gaps = 35/329 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L +++ GL + NP + SG G K G+++ K +L+ + N TPR A
Sbjct: 6 LQVSLPGLDLKNPIIPASGCFGFGQEYAKYYDLNLLGSIMIKATTLEP-RFGNPTPRVAE 64
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKE-FKQLKALYPDKILIASIM----EEYN 161
AG + IG +N LE +L E L+ YP+ +IA++ +EY
Sbjct: 65 TPAGMLNA-----IGLQN------PGLEVVLAEKLPWLEREYPNLPIIANVAGFSKQEY- 112
Query: 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
AA I + T + AIE+N SCP+ + G +GQD L +V + VPV
Sbjct: 113 -AAVSHGISKA--TNVKAIELNISCPN-VDHCNHGLLIGQDPDLAYDVVKAAVEASEVPV 168
Query: 222 WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281
+ K+TP++TDI A+ A +G+ G++ INT++ M DLKT +P + T GG S
Sbjct: 169 YVKLTPSVTDIVTVAKAAEDAGASGLTMINTLVG-MRFDLKTRKP---ILANGT-GGMSG 223
Query: 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341
AV P+AL K+++ D + G+GGV++ A E L GA+ + V T
Sbjct: 224 PAVFPVAL-------KLIRQVAQTTDLPIIGMGGVDSTEAALEMYLAGASAIGVGTANFT 276
Query: 342 HGYGLVKRLCEELKDFMKMHNFSSIEDFR 370
+ Y + E L M + SS+E+ R
Sbjct: 277 NPYA-CPDIIENLPKVMDKYGISSLEELR 304
>sp|Q5FJB5|PYRDA_LACAC Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=pyrD PE=3 SV=1
Length = 307
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 154/294 (52%), Gaps = 35/294 (11%)
Query: 49 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARL 107
IT+ GL + NP + SG G + FD GA+V KT + A N P+ A L
Sbjct: 6 ITLPGLDLKNPVMPASGTFGFGDVPAAKKFDLNDLGAMVIKTTTPKATSG-NPQPQIAVL 64
Query: 108 RAGANGSAKGQIIGWENI---ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAA 164
G S +G N ++IS++ L+ YP+ ++AS+ + +++
Sbjct: 65 DDGVLNS-----VGLTNPGVDQVISEK--------LVPLRKQYPNLPIMASVGGD-SESD 110
Query: 165 WEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
+ E+ ++ ++ ++A+E+N SCP+ + G + G ++EE+ I VP++
Sbjct: 111 YVEVAKKLSDSDLVNALEINVSCPN---VAQGGMSFGVHPDVVEELTKKIKDVVDVPIYV 167
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K+TPN+TDI A+ A + G++G+S INT++ M ID++T RP V G++ GG S +A
Sbjct: 168 KLTPNVTDIVAIAQAAEKGGADGISMINTVLG-MDIDVQTRRP---VLGHNV-GGLSGEA 222
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337
V PIA+ +M+ + + + G+GG+ + D +F+L GA+ V V T
Sbjct: 223 VKPIAI-------RMISQVYQNVTLPIIGMGGISSAEDVIKFMLAGASAVAVGT 269
>sp|Q1G864|PYRDA_LACDA Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
20081) GN=pyrD PE=3 SV=1
Length = 307
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 161/328 (49%), Gaps = 36/328 (10%)
Query: 49 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARL 107
+ + GL + NP + SG G + FD GA+V KT + A N P+ A L
Sbjct: 6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTT-PHATTGNPQPQIAIL 64
Query: 108 RAGANGSAKGQIIGWENI---ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAA 164
G S +G N ++IS++ +L+ Y D ++AS+ + ++
Sbjct: 65 EDGVLNS-----VGLTNPGVDQVISEK--------LTKLRHQYLDLPIMASVGGD-SEDD 110
Query: 165 WEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
+ E+ ++ +G ++A+E+N SCP+ + G + G ++EE+ I +P++
Sbjct: 111 YVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYV 167
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K+TPN+TDI E A+ A G++G+S INT++ M ID+KT +P + G++ GG S +A
Sbjct: 168 KLTPNVTDIVEIAKAAESGGADGISMINTVLG-MRIDVKTRKP---LLGHNM-GGLSGEA 222
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
V PIA+ + + ++ + + G+GG+ T D EFIL GAN V V +
Sbjct: 223 VKPIAIRMISQVRQVTQ-------LPIIGMGGISTAQDVIEFILAGANAVAVGSAHFEDE 275
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRG 371
K + E L ++ I D G
Sbjct: 276 LA-AKHIAENLPAELEKLGIEDINDLVG 302
>sp|Q5WFJ4|PYRDB_BACSK Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus clausii (strain KSM-K16) GN=pyrD PE=3 SV=1
Length = 304
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 153/330 (46%), Gaps = 35/330 (10%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L I++ GL+M NP + SG G + FD +A + A+ N TPR A
Sbjct: 4 LQISLPGLEMKNPVMPASGCFGFGKE-YGQFFDLNQLGAIAIKATTKEARFGNETPRVAE 62
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILI---ASIMEEYNKA 163
+AG + Q G + + +E L F Y IL S M++Y +
Sbjct: 63 TKAGMLNAIGLQNPGLQGV-------IEQELPRFDD----YDVPILANIAGSTMDDYIEV 111
Query: 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
A E ++ + AIE+N SCP+ ++ G A G + E+ + A + VPV+
Sbjct: 112 AAE----LSQQRNVSAIELNISCPN---VKQGGIAFGTVPEIAAELTKEVKAVSAVPVYV 164
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K++PN+ DI A+ ++G++G++ INT++ M ID KT RP Y GG S A
Sbjct: 165 KLSPNVADIVAIAKAIEKAGADGLAMINTLLG-MRIDAKTRRPV-LANQY---GGLSGAA 219
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
+ P+AL + +++ + D + G+GG++T D EF+L GA+ + V T
Sbjct: 220 IKPVALRMIHQVSQQV-------DIPIIGMGGIQTAEDVIEFLLAGASCIAVGTANFTDP 272
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
Y + +L ++ SI D G S
Sbjct: 273 Y-TCPNIIRDLPHWLDRLEVQSITDLIGGS 301
>sp|Q047M3|PYRDA_LACDB Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=pyrD PE=3 SV=1
Length = 307
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 161/328 (49%), Gaps = 36/328 (10%)
Query: 49 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARL 107
+ + GL + NP + SG G + FD GA+V KT + A N P+ A L
Sbjct: 6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTT-PHATTGNPQPQIAIL 64
Query: 108 RAGANGSAKGQIIGWENI---ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAA 164
G S +G N ++IS++ +L+ Y D ++AS+ + ++
Sbjct: 65 EDGVLNS-----VGLTNPGVDQVISEK--------LTKLRHQYIDLPIMASVGGD-SEDD 110
Query: 165 WEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
+ E+ ++ +G ++A+E+N SCP+ + G + G ++EE+ I +P++
Sbjct: 111 YVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYV 167
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K+TPN+TDI E A+ A G++G+S INT++ M ID+KT +P + G++ GG S +A
Sbjct: 168 KLTPNVTDIVEIAKAAESGGADGISMINTVLG-MRIDVKTRKP---LLGHNM-GGLSGEA 222
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
V PIA+ + + ++ + + G+GG+ T D EFIL GAN V V +
Sbjct: 223 VKPIAIRMISQVRQVTQ-------LPIIGMGGISTAQDVIEFILAGANAVAVGSAHFEDE 275
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRG 371
K + E L ++ I D G
Sbjct: 276 LA-AKHIAENLPAELEKLGIEDINDLVG 302
>sp|B2A2U4|PYRDB_NATTJ Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=pyrD PE=3 SV=1
Length = 303
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 151/327 (46%), Gaps = 31/327 (9%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
DL + G+ M NP SG G + GA+V K ++L + +
Sbjct: 3 DLKVNFAGIPMKNPVASASGTFGFGFEYQSVISPHELGALVVKGLTLSPKR----GNQGT 58
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
RL A+G IG EN + D + +L + +Q A LI + N +
Sbjct: 59 RLHETASGLLNS--IGLENPGI--DNFINEILPDLRQCDA----TTLIN--ISGGNDEEY 108
Query: 166 EELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAK 224
E+ ++ GI +EVN SCP+ R+ G G D L + + + PV K
Sbjct: 109 VEITQKLNNCQGIAGLEVNISCPN---IREGGLVYGVDPELTYRLVSKVRQSTSFPVIVK 165
Query: 225 MTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284
++PN+TDITE A+ R+G++G+S INT+ M ID+ + EP + S G S A+
Sbjct: 166 LSPNVTDITEIAKACERAGADGLSLINTVAG-MAIDID--QKEPVFDNISA--GLSGPAI 220
Query: 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY 344
PIAL V +++ + D + G+GG+ DA EFIL GA +V + T V
Sbjct: 221 KPIALKAVYQVSQAV-------DLPVMGMGGIYNYQDAIEFILAGATSVALGT-VNFAEP 272
Query: 345 GLVKRLCEELKDFMKMHNFSSIEDFRG 371
K + + + ++++ + S+ D RG
Sbjct: 273 TAAKSIIQGIDNYLEREGYLSVNDIRG 299
>sp|A6L5H1|PYRDB_BACV8 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
NCTC 11154) GN=pyrD PE=3 SV=1
Length = 303
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 162/329 (49%), Gaps = 33/329 (10%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
DLS+ + L++ NP + SG G E G ++ K +L + N PR A
Sbjct: 3 DLSVNIGDLKLCNPVMTASGTFGYGKEFEDFVDLEKIGGIIVKGTTLHHREG-NPYPRMA 61
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKIL--IASIMEEYNKA 163
G + +G +N + D +E + + Q++ ++ + I+ S +E+Y K
Sbjct: 62 ETPMGMLNA-----VGLQNKGV--DYFVEHI---YPQIRDIHTNMIVNVSGSAVEDYVKT 111
Query: 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
A E+I+ ++ I AIE+N SCP+ ++ G A G EV + +
Sbjct: 112 A--EIINDLDH--IPAIELNISCPN---VKQGGMAFGVSACGCSEVVKAVRNVYKKTLIV 164
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283
K++PN+TDITE AR A SG++ VS INT++ M +D + RP + GG S A
Sbjct: 165 KLSPNVTDITEIARAAEASGADSVSLINTLLG-MAVDAEKRRPVLS----TITGGMSGAA 219
Query: 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343
V PIAL V +AK + + + G+GG+ DA EF+L GA +Q+ T +
Sbjct: 220 VKPIALRMVWQVAKAV-------NIPVIGLGGIMGWKDAVEFMLAGATAIQIGTANFIDP 272
Query: 344 YGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+ ++ E + D+++ H ++S++D GA
Sbjct: 273 -AITVKVSEGINDYLERHGYTSVKDIIGA 300
>sp|A7Z4H4|PYRDB_BACA2 Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacillus amyloliquefaciens (strain FZB42) GN=pyrD
PE=3 SV=1
Length = 311
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 165/331 (49%), Gaps = 37/331 (11%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L + + GLQ+ NP + SG G G ++ K + + A+ N TPR A
Sbjct: 2 LEVNLPGLQLKNPIIPASGCFGFGKEYAGFYDLSCLGGIMIKATT-NEARFGNPTPRVAE 60
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASI----MEEYNK 162
AG + Q G E++ L + P L++F D +IA++ +++Y +
Sbjct: 61 TSAGMLNAIGLQNPGLEHV-LNHELP---WLEQF--------DTPIIANVAGSQVDDYKE 108
Query: 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW 222
A E I + + A+E+N SCP+ + G A G D + E+ + + VPV+
Sbjct: 109 VA--EHISQAPN--VHALELNISCPN---VKTGGIAFGTDPVMAAELTKAVKEVSAVPVY 161
Query: 223 AKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282
K++PN+ +ITE A+ +G++G++ INT++ M +DLKT RP + T GG S
Sbjct: 162 VKLSPNVANITEIAKAIEAAGADGLTMINTLIG-MRLDLKTGRP---ILANKT-GGLSGP 216
Query: 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342
A+ P+A+ V +++ + + G+GGV+T DA EF+L GA+ V V T ++
Sbjct: 217 AIKPVAIRMVYEVSQAVH-------IPIIGMGGVQTAEDALEFLLAGASAVAVGTANFVN 269
Query: 343 GYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373
+ + + E+L ++ + F S+ + G S
Sbjct: 270 PF-VCPEIIEQLPRVLRQYGFQSVSECIGRS 299
>sp|C4XPD6|PYRDB_DESMR Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM
13731 / RS-1) GN=pyrD PE=3 SV=1
Length = 306
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 153/328 (46%), Gaps = 30/328 (9%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
D S+ + G+ + NP + SG G G +V K +SL A ++ N PR A
Sbjct: 4 DTSVRLPGMPVKNPVMTASGTFGYGLEFAPYGDLRSLGGIVVKGLSL-APRLGNPMPRIA 62
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
G + Q G E + + D+ +E + LY A +E+ + A
Sbjct: 63 ETPCGMLNAIGLQNCGVE--KFLRDKLPRLPWRETPIIANLY------ACDADEFAELAG 114
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAK 224
+ EE G+ A+EVN SCP+ + G A GQD + ++ + +A PVW K
Sbjct: 115 ---VLSAEE-GVAALEVNISCPN---VKAGGIAFGQDPCMAGKLAEAVKKRAGDKPVWVK 167
Query: 225 MTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284
++PN+TDI AR A+ G++ ++ INT+ M +D+++ +P + GG S A+
Sbjct: 168 LSPNVTDIVSIARAAVLGGADALTCINTLTG-MSVDIRSRKPRLA----NVIGGLSGPAI 222
Query: 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY 344
P+AL V + + + + + G+GG+ + D EFIL+GA+ VQ+ T M
Sbjct: 223 KPVALRAVWQVCQAVSA-------PVIGVGGISSAEDVLEFILVGAHAVQIGTANFMR-P 274
Query: 345 GLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+ R+ E L M + +RG+
Sbjct: 275 DMAFRIAERLPQLMAELGIEDLASYRGS 302
>sp|Q8A9C3|PYRDB_BACTN Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM
2079 / NCTC 10582 / E50 / VPI-5482) GN=pyrD PE=3 SV=1
Length = 303
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 159/327 (48%), Gaps = 29/327 (8%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
DLS+ + LQM NP + SG G G ++ K +L + N PR A
Sbjct: 3 DLSVNIGELQMKNPVMTASGTFGYGEEFSDFIDIARIGGIIVKGTTLHKREG-NPYPRMA 61
Query: 106 RLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAW 165
+G + +G +N + D +E + K ++ + S +E+Y K A
Sbjct: 62 ETPSGMLNA-----VGLQNKGV--DYFVEQIYPRIKDIQTNMIVNVS-GSAIEDYVKTA- 112
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225
E+I+ +++ I AIE+N SCP+ ++ G A G + EV + A + K+
Sbjct: 113 -EIINELDK--IPAIELNISCPN---VKQGGMAFGVSAKGASEVVKAVRAAYKKTLIVKL 166
Query: 226 TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285
+PN+TDITE AR A SG++ VS INT++ M ID + RP + GG S AV
Sbjct: 167 SPNVTDITEIARAAEESGADSVSLINTLLG-MAIDAERKRPILS----TVTGGMSGAAVK 221
Query: 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 345
PIAL V +AK + + + G+GG+ DA EF+L GA+ +Q+ T +
Sbjct: 222 PIALRMVWQVAKAV-------NIPVIGLGGIMNWKDAVEFMLAGASAIQIGTANFIDPAV 274
Query: 346 LVKRLCEELKDFMKMHNFSSIEDFRGA 372
+K + + + ++++ H S+++ GA
Sbjct: 275 TIK-VEDGINNYLERHGCKSVKEIIGA 300
>sp|Q3AC05|PYRDB_CARHZ Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=pyrD PE=3 SV=1
Length = 307
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 158/331 (47%), Gaps = 39/331 (11%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRY 104
+L + + L + NP + SG G K FD + GA+V KT++ + ++ N PR
Sbjct: 2 NLKVKIGELTLKNPVMPASGTFGFGLE-FKDIFDLKNLGALVVKTITKNP-RLGNRPPRV 59
Query: 105 ARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASI----MEEY 160
+ G S GW D E +L + K L + ILI +I +EE+
Sbjct: 60 YEVSCGMINSIGLANPGW-------DYFCEKILPQIKDL-----NDILILNIAGESVEEF 107
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
A E R +E I A+E+N SCP+ K G A G D L+++ + +
Sbjct: 108 QYLAREA--QRFDE--IKALELNVSCPN---VSKGGIAFGTDLEALKQIVSSVRKIYSKT 160
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYS 280
+ K+TPN+TDIT A+ A +G++ ++ INT M ID+K+ +P + G + GG S
Sbjct: 161 LIVKLTPNVTDITVYAKAAENAGADALTLINTFTG-MVIDVKSKKP---ILG-NKHGGVS 215
Query: 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340
A+ P+A+ KM+ F + G+GG+++ A EF L GA +QV +
Sbjct: 216 GPAIRPMAV-------KMVYDCFKAVSIPIIGVGGIDSKEAALEFFLAGATAIQVGSQNF 268
Query: 341 MHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
+ G + RL EL ++++ N SI G
Sbjct: 269 VEP-GFMPRLIRELGEYLQEENIESIAKLTG 298
>sp|B2G5A3|PYRDA_LACRJ Dihydroorotate dehydrogenase A (fumarate) OS=Lactobacillus reuteri
(strain JCM 1112) GN=pyrD PE=3 SV=1
Length = 308
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 146/329 (44%), Gaps = 38/329 (11%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L++ + GL + NP + SG G K+ G++V K+ +L + N PR
Sbjct: 7 LAVELPGLSLKNPIIAASGTCGYGQEAAKKYNLNHLGSLVLKSTTL-YPRQGNPRPRVCE 65
Query: 107 LRAGANGSAKGQIIGWENIELISDRPLETMLKE-FKQLKALYPDKILIASIM----EEYN 161
AG W N + + + E L+ YP +IAS +EY
Sbjct: 66 TSAG-----------WLNANGLQNVGITAATNEKIPWLRKNYPQLPIIASAAGFSEDEYV 114
Query: 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI-NAKATVP 220
K E G+ AIE+N SCP+ + G A+G D +L+ + + A +P
Sbjct: 115 KVVSE----FANTAGVKAIELNVSCPN---VKHGGMAMGTDPEVLQRLVKQVVKAALGIP 167
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYS 280
++ K+TPN+T+I A+ A + G+ G++ INT+ + IDLKT RP + GG S
Sbjct: 168 IYVKLTPNVTNIVPLAQAAEQGGANGLTMINTLTG-LSIDLKTRRPALA----NVTGGLS 222
Query: 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340
A+ P+AL +M+ + G+GG+E+ D EF++ GAN VQ+
Sbjct: 223 GPAIKPLAL-------RMIHQVRQVSSLPIIGVGGIESAEDVLEFMMAGANAVQI-GAAS 274
Query: 341 MHGYGLVKRLCEELKDFMKMHNFSSIEDF 369
H ++ +L M + + D
Sbjct: 275 FHDPLACPKIAADLPIVMDRYGIKKLTDL 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,892,266
Number of Sequences: 539616
Number of extensions: 6430538
Number of successful extensions: 20017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 19218
Number of HSP's gapped (non-prelim): 601
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)