Query 014581
Match_columns 422
No_of_seqs 237 out of 2395
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02495 oxidoreductase, actin 100.0 1.9E-82 4.1E-87 635.5 38.7 381 41-422 5-385 (385)
2 PRK08318 dihydropyrimidine deh 100.0 3E-64 6.6E-69 516.9 32.8 350 44-406 1-354 (420)
3 COG0167 PyrD Dihydroorotate de 100.0 1.3E-63 2.9E-68 483.5 29.6 306 46-375 1-309 (310)
4 PRK02506 dihydroorotate dehydr 100.0 1.1E-60 2.4E-65 470.9 31.8 305 46-376 1-309 (310)
5 KOG1799 Dihydropyrimidine dehy 100.0 2.1E-62 4.6E-67 465.5 16.9 373 43-422 99-471 (471)
6 cd04739 DHOD_like Dihydroorota 100.0 8.3E-59 1.8E-63 460.6 35.6 315 46-390 1-321 (325)
7 cd02940 DHPD_FMN Dihydropyrimi 100.0 1E-57 2.3E-62 448.4 31.2 299 46-354 1-299 (299)
8 PRK07259 dihydroorotate dehydr 100.0 4.7E-56 1E-60 437.5 33.9 300 46-375 1-301 (301)
9 PLN02826 dihydroorotate dehydr 100.0 5.7E-56 1.2E-60 448.7 34.9 320 26-374 48-408 (409)
10 PRK07565 dihydroorotate dehydr 100.0 5.6E-55 1.2E-59 435.4 33.5 320 45-393 1-327 (334)
11 cd04741 DHOD_1A_like Dihydroor 100.0 7.6E-55 1.6E-59 426.8 30.9 285 49-358 1-294 (294)
12 cd04740 DHOD_1B_like Dihydroor 100.0 1.1E-53 2.3E-58 419.8 34.6 295 48-373 1-296 (296)
13 PF01180 DHO_dh: Dihydroorotat 100.0 5.2E-55 1.1E-59 428.9 25.2 287 46-358 1-295 (295)
14 TIGR01037 pyrD_sub1_fam dihydr 100.0 3.5E-53 7.7E-58 416.9 32.2 298 47-374 1-300 (300)
15 PRK05286 dihydroorotate dehydr 100.0 1.6E-51 3.5E-56 411.4 29.7 290 40-362 42-344 (344)
16 TIGR01036 pyrD_sub2 dihydrooro 100.0 5.2E-51 1.1E-55 405.4 26.8 275 47-354 46-335 (335)
17 cd04738 DHOD_2_like Dihydrooro 100.0 1.1E-48 2.5E-53 388.7 29.3 281 41-354 33-327 (327)
18 KOG1436 Dihydroorotate dehydro 100.0 2.7E-49 5.8E-54 372.7 21.6 328 16-373 50-397 (398)
19 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 1.7E-47 3.7E-52 374.6 29.6 283 49-353 1-289 (289)
20 TIGR00737 nifR3_yhdG putative 100.0 4.9E-28 1.1E-32 240.2 24.0 249 51-374 1-258 (319)
21 TIGR00736 nifR3_rel_arch TIM-b 100.0 2.4E-28 5.3E-33 229.6 19.7 218 69-342 5-226 (231)
22 PRK10415 tRNA-dihydrouridine s 100.0 1.7E-27 3.7E-32 236.1 22.8 233 50-353 2-240 (321)
23 cd02811 IDI-2_FMN Isopentenyl- 100.0 1.9E-26 4E-31 229.1 29.2 273 41-370 36-325 (326)
24 TIGR02151 IPP_isom_2 isopenten 100.0 2.2E-26 4.7E-31 229.3 28.3 277 40-373 36-328 (333)
25 PRK05437 isopentenyl pyrophosp 100.0 5.7E-26 1.2E-30 227.6 30.6 275 40-374 43-336 (352)
26 TIGR00742 yjbN tRNA dihydrouri 100.0 1.1E-26 2.4E-31 229.4 23.5 228 58-354 1-240 (318)
27 cd02911 arch_FMN Archeal FMN-b 99.9 1E-26 2.2E-31 220.4 19.4 230 59-351 1-232 (233)
28 PRK10550 tRNA-dihydrouridine s 99.9 1.3E-25 2.8E-30 221.4 23.9 170 149-351 62-238 (312)
29 COG0042 tRNA-dihydrouridine sy 99.9 3.2E-25 7E-30 219.4 22.1 230 50-350 3-241 (323)
30 PRK11815 tRNA-dihydrouridine s 99.9 7.6E-25 1.7E-29 218.2 23.4 236 52-353 5-249 (333)
31 cd02809 alpha_hydroxyacid_oxid 99.9 3.2E-24 7E-29 211.0 27.4 236 42-370 49-298 (299)
32 cd02801 DUS_like_FMN Dihydrour 99.9 1E-22 2.2E-27 192.7 21.3 171 149-353 54-229 (231)
33 PF01207 Dus: Dihydrouridine s 99.9 3.7E-23 8.1E-28 204.2 12.5 167 149-349 53-225 (309)
34 KOG2335 tRNA-dihydrouridine sy 99.9 3E-22 6.5E-27 194.7 17.9 167 149-347 73-243 (358)
35 PRK13523 NADPH dehydrogenase N 99.9 2.6E-21 5.7E-26 192.9 22.3 253 48-354 6-322 (337)
36 cd02922 FCB2_FMN Flavocytochro 99.9 1.5E-20 3.4E-25 187.2 27.2 251 43-370 50-342 (344)
37 cd02803 OYE_like_FMN_family Ol 99.9 3E-21 6.5E-26 192.2 19.7 256 48-352 3-326 (327)
38 cd04737 LOX_like_FMN L-Lactate 99.9 1.4E-19 2.9E-24 180.5 28.2 249 43-372 58-349 (351)
39 cd02932 OYE_YqiM_FMN Old yello 99.9 5.9E-20 1.3E-24 183.7 23.3 252 48-352 4-335 (336)
40 cd04734 OYE_like_3_FMN Old yel 99.9 1.2E-19 2.6E-24 181.7 24.0 260 48-353 4-331 (343)
41 cd04733 OYE_like_2_FMN Old yel 99.8 1.8E-19 3.8E-24 180.4 22.3 261 48-352 4-337 (338)
42 PLN02535 glycolate oxidase 99.8 1.4E-18 2.9E-23 173.6 27.4 251 42-374 57-353 (364)
43 cd02931 ER_like_FMN Enoate red 99.8 4.7E-19 1E-23 179.8 24.0 260 48-353 4-351 (382)
44 cd02930 DCR_FMN 2,4-dienoyl-Co 99.8 4.7E-19 1E-23 178.3 22.4 256 48-353 4-322 (353)
45 COG1902 NemA NADH:flavin oxido 99.8 1.6E-18 3.5E-23 173.5 25.2 254 48-354 9-335 (363)
46 cd02933 OYE_like_FMN Old yello 99.8 2.2E-18 4.8E-23 172.1 25.2 155 163-353 152-330 (338)
47 TIGR02708 L_lactate_ox L-lacta 99.8 5.1E-18 1.1E-22 169.5 27.6 253 42-374 65-358 (367)
48 cd04735 OYE_like_4_FMN Old yel 99.8 1E-18 2.2E-23 175.8 22.3 254 48-354 4-330 (353)
49 cd04747 OYE_like_5_FMN Old yel 99.8 1.2E-18 2.6E-23 174.9 22.4 250 48-354 4-345 (361)
50 PF01070 FMN_dh: FMN-dependent 99.8 4.7E-18 1E-22 170.4 23.9 250 42-372 43-353 (356)
51 cd02929 TMADH_HD_FMN Trimethyl 99.8 7E-18 1.5E-22 170.6 24.1 254 48-353 11-335 (370)
52 TIGR01306 GMP_reduct_2 guanosi 99.8 2.8E-17 6E-22 161.3 26.7 212 41-340 18-231 (321)
53 PLN02979 glycolate oxidase 99.8 3.1E-17 6.6E-22 162.5 26.9 249 42-371 54-350 (366)
54 cd03332 LMO_FMN L-Lactate 2-mo 99.8 3.5E-17 7.7E-22 164.5 27.5 136 202-371 237-380 (383)
55 PRK11197 lldD L-lactate dehydr 99.8 2.8E-17 6E-22 165.0 25.8 134 204-371 231-372 (381)
56 PRK05458 guanosine 5'-monophos 99.8 7.9E-17 1.7E-21 158.7 27.9 243 40-371 20-310 (326)
57 PLN02493 probable peroxisomal 99.8 6.9E-17 1.5E-21 161.2 27.6 249 42-371 55-351 (367)
58 PF00724 Oxidored_FMN: NADH:fl 99.8 1.1E-17 2.5E-22 167.5 20.4 258 48-353 5-337 (341)
59 cd04736 MDH_FMN Mandelate dehy 99.8 2.6E-16 5.7E-21 156.9 27.2 133 202-370 220-360 (361)
60 PRK10605 N-ethylmaleimide redu 99.8 9.4E-17 2E-21 161.8 23.9 154 163-353 159-337 (362)
61 PRK08255 salicylyl-CoA 5-hydro 99.8 3.2E-17 6.9E-22 180.3 21.8 255 47-353 401-733 (765)
62 cd00381 IMPDH IMPDH: The catal 99.7 9.1E-16 2E-20 152.5 27.6 213 40-341 16-231 (325)
63 KOG0538 Glycolate oxidase [Ene 99.7 6.1E-16 1.3E-20 146.8 24.8 249 42-371 53-350 (363)
64 PLN02411 12-oxophytodienoate r 99.7 1.1E-15 2.4E-20 155.4 24.7 164 163-353 165-358 (391)
65 TIGR01305 GMP_reduct_1 guanosi 99.7 2.5E-14 5.4E-19 139.6 26.5 212 42-339 25-244 (343)
66 PRK08649 inosine 5-monophospha 99.7 1.4E-14 3E-19 145.7 23.3 287 39-371 29-362 (368)
67 TIGR01304 IMP_DH_rel_2 IMP deh 99.7 2.9E-14 6.3E-19 143.0 23.7 283 42-371 29-364 (369)
68 KOG2333 Uncharacterized conser 99.6 2E-15 4.3E-20 150.6 14.1 201 149-382 319-531 (614)
69 PRK05096 guanosine 5'-monophos 99.6 2.6E-13 5.5E-18 132.5 25.1 211 43-339 27-245 (346)
70 cd02808 GltS_FMN Glutamate syn 99.6 4.4E-13 9.4E-18 136.6 23.4 153 201-371 196-386 (392)
71 PRK06843 inosine 5-monophospha 99.6 5E-13 1.1E-17 135.1 22.8 248 41-341 25-290 (404)
72 TIGR03151 enACPred_II putative 99.6 3.6E-13 7.9E-18 132.9 20.9 188 54-342 8-196 (307)
73 PRK13125 trpA tryptophan synth 99.5 4.4E-13 9.5E-18 128.3 19.8 180 151-341 5-219 (244)
74 cd04722 TIM_phosphate_binding 99.5 9.8E-13 2.1E-17 119.7 21.2 196 60-337 1-200 (200)
75 PF00478 IMPDH: IMP dehydrogen 99.5 1.3E-12 2.8E-17 129.8 22.0 211 44-340 23-244 (352)
76 COG1304 idi Isopentenyl diphos 99.5 3.6E-13 7.9E-18 134.6 17.4 140 201-374 201-348 (360)
77 cd04730 NPD_like 2-Nitropropan 99.5 1.2E-11 2.6E-16 117.4 21.5 189 57-342 2-191 (236)
78 PF03060 NMO: Nitronate monoox 99.4 1.4E-11 3E-16 123.1 22.1 193 54-342 8-225 (330)
79 cd04743 NPD_PKS 2-Nitropropane 99.3 3.3E-10 7.2E-15 111.4 20.1 194 57-342 2-208 (320)
80 KOG2334 tRNA-dihydrouridine sy 99.3 3.6E-11 7.8E-16 119.0 12.5 163 150-346 82-251 (477)
81 cd04724 Tryptophan_synthase_al 99.2 2.4E-10 5.3E-15 109.2 16.3 179 153-342 3-221 (242)
82 PRK04180 pyridoxal biosynthesi 99.2 6.1E-11 1.3E-15 113.6 12.1 185 151-357 19-257 (293)
83 PTZ00314 inosine-5'-monophosph 99.2 8.2E-10 1.8E-14 115.7 20.4 140 160-341 238-378 (495)
84 COG2070 Dioxygenases related t 99.2 4.1E-10 8.8E-15 112.3 17.1 193 53-341 10-218 (336)
85 TIGR00262 trpA tryptophan synt 99.2 1.8E-09 3.9E-14 104.0 20.7 183 150-341 10-232 (256)
86 PRK01033 imidazole glycerol ph 99.2 9.7E-10 2.1E-14 106.1 18.4 172 140-364 66-257 (258)
87 PRK07107 inosine 5-monophospha 99.2 9.9E-10 2.1E-14 115.0 19.3 142 163-340 241-385 (502)
88 cd04728 ThiG Thiazole synthase 99.2 8E-09 1.7E-13 97.1 23.2 219 50-355 2-225 (248)
89 PF04131 NanE: Putative N-acet 99.2 2.4E-09 5.2E-14 96.7 18.4 163 138-354 22-190 (192)
90 cd04742 NPD_FabD 2-Nitropropan 99.2 3.5E-09 7.6E-14 107.7 21.7 214 54-341 10-253 (418)
91 cd04731 HisF The cyclase subun 99.2 3.6E-09 7.9E-14 101.1 19.6 154 139-344 62-231 (243)
92 PRK00208 thiG thiazole synthas 99.1 2.3E-08 5E-13 94.1 23.8 217 49-355 2-225 (250)
93 PLN02274 inosine-5'-monophosph 99.1 2E-09 4.3E-14 112.9 17.2 146 152-341 239-385 (505)
94 CHL00200 trpA tryptophan synth 99.1 1E-08 2.2E-13 99.0 20.8 183 150-341 15-236 (263)
95 cd04727 pdxS PdxS is a subunit 99.1 1E-08 2.3E-13 98.0 20.2 181 139-357 56-248 (283)
96 TIGR01303 IMP_DH_rel_1 IMP deh 99.1 4.6E-09 1E-13 109.3 19.3 135 164-339 225-360 (475)
97 PRK14024 phosphoribosyl isomer 99.1 5.5E-09 1.2E-13 99.9 18.2 152 139-343 66-229 (241)
98 TIGR02814 pfaD_fam PfaD family 99.1 9.7E-09 2.1E-13 105.1 21.0 211 54-341 15-258 (444)
99 TIGR01302 IMP_dehydrog inosine 99.1 2.9E-09 6.4E-14 110.6 16.8 138 162-341 223-361 (450)
100 PRK02083 imidazole glycerol ph 99.1 1.5E-08 3.2E-13 97.5 19.8 169 139-364 65-250 (253)
101 TIGR00735 hisF imidazoleglycer 99.1 1.5E-08 3.3E-13 97.6 19.7 170 138-364 64-252 (254)
102 PRK01130 N-acetylmannosamine-6 99.1 1E-08 2.2E-13 96.7 18.1 140 168-354 80-219 (221)
103 PRK05567 inosine 5'-monophosph 99.1 1.1E-08 2.3E-13 107.4 19.5 166 166-372 230-455 (486)
104 PLN02591 tryptophan synthase 99.0 2.4E-08 5.3E-13 95.6 20.1 181 152-341 4-223 (250)
105 PRK13585 1-(5-phosphoribosyl)- 99.0 1.5E-08 3.4E-13 96.6 18.2 160 139-352 67-237 (241)
106 cd00331 IGPS Indole-3-glycerol 99.0 1.1E-09 2.5E-14 102.8 9.8 170 149-342 10-207 (217)
107 TIGR00007 phosphoribosylformim 99.0 2.6E-08 5.6E-13 94.4 19.0 150 140-342 64-224 (230)
108 TIGR03572 WbuZ glycosyl amidat 99.0 2.6E-08 5.5E-13 94.6 19.0 148 140-340 66-231 (232)
109 PRK00748 1-(5-phosphoribosyl)- 99.0 1.8E-08 3.9E-13 95.6 17.8 152 139-342 65-226 (233)
110 cd04729 NanE N-acetylmannosami 99.0 1.6E-08 3.5E-13 95.2 17.1 129 168-342 84-212 (219)
111 TIGR03315 Se_ygfK putative sel 99.0 1.2E-08 2.7E-13 114.0 18.5 285 43-358 37-396 (1012)
112 cd04732 HisA HisA. Phosphorib 99.0 2.3E-08 5E-13 94.8 17.9 152 140-343 65-226 (234)
113 COG0159 TrpA Tryptophan syntha 99.0 7.1E-08 1.5E-12 92.1 20.6 192 139-341 7-238 (265)
114 PRK09853 putative selenate red 99.0 1.4E-08 3E-13 113.3 17.6 284 43-357 38-397 (1019)
115 PRK00507 deoxyribose-phosphate 99.0 4.3E-08 9.3E-13 92.3 18.0 124 169-338 80-210 (221)
116 PF05690 ThiG: Thiazole biosyn 99.0 4.8E-07 1E-11 84.3 24.2 208 50-342 1-210 (247)
117 PF00290 Trp_syntA: Tryptophan 98.9 2.8E-08 6E-13 95.4 15.8 192 142-342 3-232 (259)
118 KOG2550 IMP dehydrogenase/GMP 98.9 4.8E-08 1E-12 96.7 17.1 135 166-341 253-388 (503)
119 TIGR00343 pyridoxal 5'-phospha 98.9 8.6E-08 1.9E-12 91.9 18.2 178 139-357 58-251 (287)
120 PF01645 Glu_synthase: Conserv 98.9 3.4E-08 7.3E-13 99.1 15.3 123 201-341 185-308 (368)
121 CHL00162 thiG thiamin biosynth 98.9 7.3E-07 1.6E-11 84.0 22.6 209 48-342 7-224 (267)
122 COG0069 GltB Glutamate synthas 98.9 4.1E-08 9E-13 100.7 15.1 155 201-373 285-477 (485)
123 TIGR03128 RuMP_HxlA 3-hexulose 98.8 3.3E-07 7.1E-12 85.3 19.0 151 138-342 41-192 (206)
124 PRK13111 trpA tryptophan synth 98.8 9.9E-07 2.1E-11 85.0 22.7 210 64-342 20-234 (258)
125 PRK07807 inosine 5-monophospha 98.8 8.6E-08 1.9E-12 100.0 16.0 136 164-341 227-364 (479)
126 cd00945 Aldolase_Class_I Class 98.8 2.4E-07 5.2E-12 84.9 16.9 144 149-336 48-201 (201)
127 PRK08883 ribulose-phosphate 3- 98.8 4.7E-07 1E-11 85.3 18.7 186 153-360 3-217 (220)
128 PRK11750 gltB glutamate syntha 98.8 1.2E-07 2.7E-12 107.7 15.5 154 201-372 978-1168(1485)
129 TIGR01304 IMP_DH_rel_2 IMP deh 98.8 3E-07 6.6E-12 92.6 16.8 141 166-362 102-252 (369)
130 PRK11840 bifunctional sulfur c 98.7 1E-05 2.2E-10 79.5 25.7 207 47-342 73-284 (326)
131 TIGR02320 PEP_mutase phosphoen 98.7 1.3E-05 2.8E-10 78.4 24.3 229 60-359 10-260 (285)
132 COG3010 NanE Putative N-acetyl 98.7 1.9E-06 4.1E-11 78.6 16.9 153 138-341 56-214 (229)
133 TIGR01163 rpe ribulose-phospha 98.7 1E-06 2.2E-11 82.0 15.9 170 154-342 3-199 (210)
134 cd04731 HisF The cyclase subun 98.6 2E-07 4.3E-12 89.1 11.2 91 230-354 27-117 (243)
135 PTZ00170 D-ribulose-5-phosphat 98.6 2.5E-06 5.3E-11 81.0 17.6 168 151-342 8-207 (228)
136 TIGR00735 hisF imidazoleglycer 98.6 3.3E-07 7.1E-12 88.3 11.7 91 230-354 30-120 (254)
137 KOG0134 NADH:flavin oxidoreduc 98.6 6.8E-07 1.5E-11 89.5 13.3 167 165-354 176-365 (400)
138 cd04726 KGPDC_HPS 3-Keto-L-gul 98.6 4.1E-06 8.9E-11 77.5 17.9 149 139-342 43-192 (202)
139 PRK02083 imidazole glycerol ph 98.6 4.1E-07 8.9E-12 87.6 11.4 91 230-354 30-120 (253)
140 TIGR01769 GGGP geranylgeranylg 98.6 2.2E-06 4.7E-11 79.7 15.6 151 163-336 11-205 (205)
141 COG2022 ThiG Uncharacterized e 98.6 1.3E-05 2.7E-10 74.5 20.2 210 45-341 4-216 (262)
142 PRK08745 ribulose-phosphate 3- 98.6 6.3E-06 1.4E-10 77.7 18.7 172 151-342 5-205 (223)
143 PLN02334 ribulose-phosphate 3- 98.6 1.2E-05 2.7E-10 76.1 20.5 150 140-342 57-208 (229)
144 PRK00278 trpC indole-3-glycero 98.5 6.3E-06 1.4E-10 79.7 18.0 145 139-342 102-246 (260)
145 PRK06552 keto-hydroxyglutarate 98.5 1.5E-05 3.3E-10 74.6 19.6 137 136-341 51-188 (213)
146 COG0036 Rpe Pentose-5-phosphat 98.5 9.1E-06 2E-10 75.5 17.4 174 150-345 4-205 (220)
147 PRK13587 1-(5-phosphoribosyl)- 98.5 9.8E-06 2.1E-10 77.2 18.1 150 139-341 67-226 (234)
148 TIGR00259 thylakoid_BtpA membr 98.5 2.9E-05 6.2E-10 74.5 20.9 158 139-343 70-234 (257)
149 PF04481 DUF561: Protein of un 98.5 1.2E-05 2.6E-10 74.0 17.2 159 141-341 54-219 (242)
150 PRK07695 transcriptional regul 98.5 5.3E-06 1.1E-10 77.0 15.1 94 233-357 105-200 (201)
151 COG0107 HisF Imidazoleglycerol 98.5 9.1E-06 2E-10 75.4 16.2 173 134-364 60-252 (256)
152 PRK13307 bifunctional formalde 98.4 1.9E-05 4.1E-10 80.3 19.7 148 139-342 216-364 (391)
153 PRK14057 epimerase; Provisiona 98.4 2.5E-05 5.4E-10 74.7 19.3 190 149-362 19-245 (254)
154 COG0106 HisA Phosphoribosylfor 98.4 1.3E-05 2.7E-10 75.6 16.6 153 140-344 67-229 (241)
155 PRK08091 ribulose-phosphate 3- 98.4 2.9E-05 6.3E-10 73.3 19.1 172 149-342 12-213 (228)
156 PRK08005 epimerase; Validated 98.4 2.2E-05 4.8E-10 73.3 18.0 167 152-342 3-197 (210)
157 cd00429 RPE Ribulose-5-phospha 98.4 8.3E-06 1.8E-10 75.7 15.3 174 152-342 2-200 (211)
158 PRK04169 geranylgeranylglycery 98.4 1.4E-05 3E-10 75.7 16.4 59 286-351 169-228 (232)
159 PF00977 His_biosynth: Histidi 98.4 2.9E-05 6.2E-10 73.7 17.7 154 135-341 60-225 (229)
160 PF00834 Ribul_P_3_epim: Ribul 98.4 5.7E-06 1.2E-10 76.9 12.4 171 152-342 2-200 (201)
161 TIGR01768 GGGP-family geranylg 98.3 2E-05 4.4E-10 74.0 15.7 159 165-350 16-221 (223)
162 PF03437 BtpA: BtpA family; I 98.3 4.5E-05 9.8E-10 73.1 18.2 158 139-344 71-235 (254)
163 PRK08649 inosine 5-monophospha 98.3 5.3E-06 1.1E-10 83.9 12.2 102 202-338 116-217 (368)
164 PRK09140 2-dehydro-3-deoxy-6-p 98.3 2.4E-05 5.1E-10 73.1 15.7 165 150-342 10-185 (206)
165 cd04732 HisA HisA. Phosphorib 98.3 4.9E-06 1.1E-10 78.8 11.3 91 230-354 29-119 (234)
166 TIGR01182 eda Entner-Doudoroff 98.3 2.3E-05 5E-10 72.8 14.7 163 149-342 7-182 (204)
167 TIGR00126 deoC deoxyribose-pho 98.3 4.3E-05 9.4E-10 71.5 16.5 126 169-337 76-205 (211)
168 TIGR02317 prpB methylisocitrat 98.3 0.0003 6.4E-09 68.8 22.5 206 60-342 14-235 (285)
169 cd00452 KDPG_aldolase KDPG and 98.3 2.4E-05 5.1E-10 72.1 14.0 45 289-340 131-175 (190)
170 cd04723 HisA_HisF Phosphoribos 98.2 7.5E-05 1.6E-09 71.1 17.5 148 139-342 69-224 (233)
171 PF00218 IGPS: Indole-3-glycer 98.2 1.8E-05 3.8E-10 76.0 12.5 159 164-346 69-247 (254)
172 COG0214 SNZ1 Pyridoxine biosyn 98.2 1.9E-05 4.1E-10 73.2 12.0 85 151-250 22-106 (296)
173 COG0107 HisF Imidazoleglycerol 98.2 1.4E-05 3E-10 74.3 10.9 91 230-354 30-120 (256)
174 cd00377 ICL_PEPM Members of th 98.2 0.00045 9.8E-09 66.2 21.5 212 58-342 9-232 (243)
175 PRK07028 bifunctional hexulose 98.2 0.00022 4.7E-09 74.0 20.8 150 137-342 45-196 (430)
176 PRK11320 prpB 2-methylisocitra 98.2 0.00062 1.4E-08 66.7 22.7 213 60-348 18-246 (292)
177 TIGR01919 hisA-trpF 1-(5-phosp 98.2 0.00011 2.5E-09 70.2 17.0 151 139-342 65-231 (243)
178 COG0269 SgbH 3-hexulose-6-phos 98.2 0.00029 6.3E-09 65.3 18.6 166 138-354 45-212 (217)
179 PRK00043 thiE thiamine-phospha 98.1 0.00022 4.8E-09 66.3 18.3 80 234-342 115-194 (212)
180 cd00959 DeoC 2-deoxyribose-5-p 98.1 0.00016 3.5E-09 67.3 17.2 123 169-334 75-201 (203)
181 PRK09722 allulose-6-phosphate 98.1 0.00048 1E-08 65.2 20.4 151 140-341 51-203 (229)
182 cd00564 TMP_TenI Thiamine mono 98.1 0.00015 3.3E-09 66.1 16.7 79 234-342 106-184 (196)
183 PF13714 PEP_mutase: Phosphoen 98.1 0.00048 1.1E-08 65.7 20.2 204 70-350 18-233 (238)
184 PRK14024 phosphoribosyl isomer 98.1 2.6E-05 5.7E-10 74.6 11.6 90 230-354 32-121 (241)
185 PRK00748 1-(5-phosphoribosyl)- 98.1 2.6E-05 5.7E-10 73.9 11.5 91 230-354 30-120 (233)
186 PLN02617 imidazole glycerol ph 98.1 0.00014 3E-09 77.1 17.8 187 136-364 302-535 (538)
187 PRK13957 indole-3-glycerol-pho 98.1 0.00012 2.6E-09 69.9 15.6 157 165-346 63-239 (247)
188 COG0434 SgcQ Predicted TIM-bar 98.1 0.00032 6.9E-09 65.6 17.8 163 135-343 72-239 (263)
189 COG1646 Predicted phosphate-bi 98.1 4.3E-05 9.3E-10 71.3 12.0 164 163-354 28-237 (240)
190 PRK06512 thiamine-phosphate py 98.1 0.00032 7E-09 66.2 18.3 78 233-342 121-198 (221)
191 PRK05581 ribulose-phosphate 3- 98.1 0.00044 9.5E-09 64.8 19.2 153 139-342 52-204 (220)
192 PRK06015 keto-hydroxyglutarate 98.1 0.00015 3.2E-09 67.2 15.5 148 149-341 3-177 (201)
193 TIGR02321 Pphn_pyruv_hyd phosp 98.1 0.0024 5.2E-08 62.7 24.6 234 60-365 16-261 (290)
194 TIGR02319 CPEP_Pphonmut carbox 98.1 0.0013 2.8E-08 64.6 22.5 219 58-353 16-250 (294)
195 PLN02446 (5-phosphoribosyl)-5- 98.1 0.00027 5.8E-09 68.0 17.1 144 151-340 83-242 (262)
196 PRK04302 triosephosphate isome 98.0 0.00055 1.2E-08 64.6 19.0 147 149-342 56-208 (223)
197 PRK07114 keto-hydroxyglutarate 98.0 0.00032 6.9E-09 66.1 17.0 168 150-341 15-193 (222)
198 PRK05718 keto-hydroxyglutarate 98.0 0.0002 4.2E-09 67.1 15.0 147 150-341 15-188 (212)
199 COG0274 DeoC Deoxyribose-phosp 98.0 5.6E-05 1.2E-09 70.4 11.1 127 169-338 83-214 (228)
200 cd00958 DhnA Class I fructose- 98.0 0.00011 2.3E-09 69.8 13.4 125 166-342 79-220 (235)
201 PRK07455 keto-hydroxyglutarate 98.0 0.00034 7.3E-09 64.3 16.0 162 150-341 12-185 (187)
202 PRK13585 1-(5-phosphoribosyl)- 98.0 6.2E-05 1.3E-09 71.8 11.3 91 230-354 32-122 (241)
203 TIGR03572 WbuZ glycosyl amidat 98.0 8E-05 1.7E-09 70.6 11.9 90 230-353 30-119 (232)
204 PRK04128 1-(5-phosphoribosyl)- 97.9 0.0003 6.6E-09 66.7 14.9 140 140-342 65-217 (228)
205 COG0352 ThiE Thiamine monophos 97.9 0.0011 2.4E-08 61.9 18.3 92 233-355 114-207 (211)
206 PRK13587 1-(5-phosphoribosyl)- 97.9 9E-05 1.9E-09 70.6 11.3 91 230-354 31-122 (234)
207 COG2876 AroA 3-deoxy-D-arabino 97.9 0.00042 9.2E-09 65.8 15.3 210 43-336 27-249 (286)
208 PRK00278 trpC indole-3-glycero 97.9 0.00022 4.8E-09 69.0 14.0 132 149-337 49-188 (260)
209 PTZ00314 inosine-5'-monophosph 97.9 0.00062 1.4E-08 71.7 18.3 69 232-336 242-310 (495)
210 PRK14114 1-(5-phosphoribosyl)- 97.9 0.00027 5.9E-09 67.5 14.1 147 139-342 65-229 (241)
211 cd06556 ICL_KPHMT Members of t 97.9 0.0011 2.3E-08 63.3 18.1 144 58-250 12-176 (240)
212 PRK13586 1-(5-phosphoribosyl)- 97.9 0.00034 7.4E-09 66.5 14.6 150 139-342 64-224 (232)
213 PF01081 Aldolase: KDPG and KH 97.9 0.00011 2.5E-09 67.8 11.0 136 137-342 47-182 (196)
214 PRK04128 1-(5-phosphoribosyl)- 97.9 0.0001 2.3E-09 69.9 10.9 87 231-353 31-117 (228)
215 PRK13397 3-deoxy-7-phosphohept 97.9 0.0027 6E-08 60.7 20.5 205 45-336 2-219 (250)
216 PRK07226 fructose-bisphosphate 97.9 0.00035 7.6E-09 67.9 14.5 136 168-358 98-251 (267)
217 KOG1606 Stationary phase-induc 97.9 0.00019 4.2E-09 65.7 11.5 73 168-248 33-105 (296)
218 PRK01033 imidazole glycerol ph 97.9 0.00015 3.2E-09 70.1 11.6 90 230-353 30-119 (258)
219 PF00977 His_biosynth: Histidi 97.9 9.7E-05 2.1E-09 70.1 10.1 92 229-354 28-119 (229)
220 TIGR01949 AroFGH_arch predicte 97.9 0.00029 6.2E-09 68.1 13.5 123 167-342 94-233 (258)
221 TIGR00007 phosphoribosylformim 97.8 0.00018 3.8E-09 68.1 11.7 91 230-354 28-118 (230)
222 PRK06806 fructose-bisphosphate 97.8 0.0045 9.7E-08 60.6 20.7 162 133-342 59-236 (281)
223 TIGR00734 hisAF_rel hisA/hisF 97.8 0.00016 3.4E-09 68.3 10.1 78 231-342 142-219 (221)
224 TIGR02129 hisA_euk phosphoribo 97.8 0.00016 3.4E-09 69.3 10.1 84 231-354 38-125 (253)
225 PRK12457 2-dehydro-3-deoxyphos 97.8 0.0033 7.1E-08 60.6 18.9 196 58-337 15-238 (281)
226 PF02581 TMP-TENI: Thiamine mo 97.8 0.00096 2.1E-08 60.8 14.6 77 231-339 104-180 (180)
227 PF01791 DeoC: DeoC/LacD famil 97.8 0.00034 7.3E-09 66.6 12.1 136 166-341 79-235 (236)
228 cd00405 PRAI Phosphoribosylant 97.7 0.0014 3E-08 60.9 15.7 135 150-342 52-187 (203)
229 PLN02617 imidazole glycerol ph 97.7 0.00025 5.5E-09 75.1 11.6 95 230-354 267-383 (538)
230 TIGR00693 thiE thiamine-phosph 97.7 0.0033 7.1E-08 57.8 17.4 84 229-342 103-186 (196)
231 PRK02615 thiamine-phosphate py 97.7 0.0027 5.9E-08 63.8 17.9 79 233-342 250-328 (347)
232 cd00408 DHDPS-like Dihydrodipi 97.7 0.03 6.5E-07 54.5 24.9 163 133-352 49-215 (281)
233 TIGR02129 hisA_euk phosphoribo 97.7 0.0028 6.1E-08 60.7 17.0 144 152-342 77-238 (253)
234 COG2513 PrpB PEP phosphonomuta 97.7 0.015 3.2E-07 56.3 21.5 207 58-342 18-240 (289)
235 PRK03512 thiamine-phosphate py 97.6 0.0044 9.6E-08 58.1 17.6 82 231-342 111-192 (211)
236 PRK05283 deoxyribose-phosphate 97.6 0.00085 1.8E-08 64.4 12.9 125 169-331 89-219 (257)
237 COG0134 TrpC Indole-3-glycerol 97.6 0.0016 3.4E-08 62.3 14.4 52 289-346 194-245 (254)
238 TIGR01859 fruc_bis_ald_ fructo 97.6 0.012 2.5E-07 57.7 20.9 162 133-342 58-236 (282)
239 PF00701 DHDPS: Dihydrodipicol 97.6 0.023 5E-07 55.7 23.2 164 133-353 53-220 (289)
240 PLN02460 indole-3-glycerol-pho 97.6 0.0011 2.3E-08 66.0 13.6 39 307-346 288-326 (338)
241 PRK13586 1-(5-phosphoribosyl)- 97.6 0.00055 1.2E-08 65.1 11.2 90 230-354 30-119 (232)
242 cd00951 KDGDH 5-dehydro-4-deox 97.6 0.056 1.2E-06 53.1 25.6 162 133-351 52-217 (289)
243 PRK13802 bifunctional indole-3 97.6 0.0018 4E-08 70.5 16.2 172 150-346 50-249 (695)
244 cd02812 PcrB_like PcrB_like pr 97.6 0.00019 4.2E-09 67.3 7.1 56 289-351 163-218 (219)
245 PF01884 PcrB: PcrB family; I 97.5 0.00022 4.8E-09 67.2 7.3 46 307-354 182-227 (230)
246 cd04723 HisA_HisF Phosphoribos 97.5 0.0005 1.1E-08 65.4 9.8 89 230-354 35-123 (233)
247 KOG3111 D-ribulose-5-phosphate 97.5 0.0022 4.8E-08 58.2 13.0 182 152-355 7-218 (224)
248 PRK14114 1-(5-phosphoribosyl)- 97.5 0.00083 1.8E-08 64.2 11.0 86 230-350 30-115 (241)
249 COG0800 Eda 2-keto-3-deoxy-6-p 97.5 0.0057 1.2E-07 56.7 15.8 186 150-360 13-208 (211)
250 PF01081 Aldolase: KDPG and KH 97.5 0.0039 8.5E-08 57.6 14.5 135 151-352 9-144 (196)
251 cd03319 L-Ala-DL-Glu_epimerase 97.5 0.0072 1.6E-07 60.0 17.4 155 149-364 123-281 (316)
252 PRK06801 hypothetical protein; 97.5 0.025 5.4E-07 55.5 20.7 163 133-342 59-239 (286)
253 cd03316 MR_like Mandelate race 97.5 0.0028 6.1E-08 63.9 14.6 140 149-337 126-271 (357)
254 TIGR00674 dapA dihydrodipicoli 97.5 0.066 1.4E-06 52.4 23.9 154 133-341 50-207 (285)
255 PLN02446 (5-phosphoribosyl)-5- 97.4 0.00096 2.1E-08 64.2 10.4 87 230-354 43-132 (262)
256 PLN03033 2-dehydro-3-deoxyphos 97.4 0.012 2.5E-07 56.9 17.4 148 52-253 9-167 (290)
257 TIGR01919 hisA-trpF 1-(5-phosp 97.4 0.0013 2.9E-08 62.9 11.2 89 231-354 32-120 (243)
258 TIGR03249 KdgD 5-dehydro-4-deo 97.4 0.12 2.7E-06 50.8 25.4 162 133-350 57-221 (296)
259 PRK03620 5-dehydro-4-deoxygluc 97.4 0.12 2.7E-06 51.0 25.4 95 133-240 59-154 (303)
260 PRK09427 bifunctional indole-3 97.4 0.0064 1.4E-07 63.3 16.9 170 140-370 102-271 (454)
261 PRK08999 hypothetical protein; 97.4 0.0034 7.4E-08 62.1 14.4 74 235-339 238-311 (312)
262 PRK13111 trpA tryptophan synth 97.4 0.013 2.8E-07 56.6 17.8 98 151-250 13-124 (258)
263 PRK13306 ulaD 3-keto-L-gulonat 97.4 0.0092 2E-07 56.1 16.2 164 139-354 46-211 (216)
264 PRK12595 bifunctional 3-deoxy- 97.4 0.034 7.4E-07 56.3 21.2 149 134-338 168-324 (360)
265 PF00478 IMPDH: IMP dehydrogen 97.4 0.0055 1.2E-07 61.5 15.0 132 149-336 37-177 (352)
266 PRK13813 orotidine 5'-phosphat 97.4 0.012 2.6E-07 55.0 16.7 130 170-358 74-212 (215)
267 PRK05198 2-dehydro-3-deoxyphos 97.4 0.041 8.8E-07 52.8 20.0 94 133-253 66-161 (264)
268 TIGR01362 KDO8P_synth 3-deoxy- 97.4 0.046 1E-06 52.2 20.2 146 133-337 58-222 (258)
269 cd04733 OYE_like_2_FMN Old yel 97.3 0.011 2.4E-07 59.4 17.2 114 134-249 200-321 (338)
270 PRK08673 3-deoxy-7-phosphohept 97.3 0.033 7.2E-07 55.8 20.0 147 134-336 143-297 (335)
271 PRK00311 panB 3-methyl-2-oxobu 97.3 0.025 5.4E-07 54.8 18.4 144 58-250 15-181 (264)
272 PRK13398 3-deoxy-7-phosphohept 97.3 0.078 1.7E-06 51.5 21.2 207 46-338 13-233 (266)
273 COG0106 HisA Phosphoribosylfor 97.2 0.0025 5.3E-08 60.3 10.4 91 230-354 31-121 (241)
274 TIGR01302 IMP_dehydrog inosine 97.2 0.012 2.5E-07 61.6 16.5 69 232-336 225-293 (450)
275 cd06557 KPHMT-like Ketopantoat 97.2 0.031 6.7E-07 53.8 17.7 143 58-250 12-178 (254)
276 TIGR02313 HpaI-NOT-DapA 2,4-di 97.2 0.22 4.8E-06 49.0 24.3 153 133-341 52-211 (294)
277 TIGR00683 nanA N-acetylneurami 97.2 0.22 4.8E-06 48.9 24.1 162 133-352 53-219 (290)
278 PRK12290 thiE thiamine-phospha 97.2 0.023 4.9E-07 58.5 17.5 95 222-342 302-398 (437)
279 PRK10550 tRNA-dihydrouridine s 97.2 0.011 2.4E-07 58.7 14.9 106 133-250 116-224 (312)
280 cd00954 NAL N-Acetylneuraminic 97.2 0.26 5.6E-06 48.3 24.5 97 133-241 53-154 (288)
281 cd02803 OYE_like_FMN_family Ol 97.2 0.018 3.9E-07 57.4 16.4 112 134-250 192-311 (327)
282 PRK04147 N-acetylneuraminate l 97.2 0.15 3.1E-06 50.2 22.6 97 133-241 56-156 (293)
283 PRK03170 dihydrodipicolinate s 97.2 0.28 6.2E-06 48.1 24.6 97 133-241 53-153 (292)
284 cd00950 DHDPS Dihydrodipicolin 97.1 0.22 4.7E-06 48.6 23.6 162 133-351 52-217 (284)
285 PRK07315 fructose-bisphosphate 97.1 0.083 1.8E-06 52.0 20.5 162 134-342 61-238 (293)
286 PRK13396 3-deoxy-7-phosphohept 97.1 0.12 2.7E-06 52.0 21.9 169 134-357 151-337 (352)
287 COG0329 DapA Dihydrodipicolina 97.1 0.18 4E-06 49.8 22.8 155 133-341 56-214 (299)
288 PRK05848 nicotinate-nucleotide 97.1 0.0068 1.5E-07 58.9 12.0 93 205-340 167-261 (273)
289 KOG1799 Dihydropyrimidine dehy 97.1 6.5E-05 1.4E-09 73.4 -2.0 92 274-372 19-110 (471)
290 PRK13523 NADPH dehydrogenase N 97.0 0.021 4.6E-07 57.3 15.4 101 137-248 196-303 (337)
291 PRK06552 keto-hydroxyglutarate 97.0 0.034 7.3E-07 52.2 15.8 137 150-352 13-151 (213)
292 cd02931 ER_like_FMN Enoate red 97.0 0.028 6E-07 57.5 16.2 111 136-250 204-335 (382)
293 cd03315 MLE_like Muconate lact 97.0 0.043 9.3E-07 53.0 16.6 134 149-338 74-212 (265)
294 PF03932 CutC: CutC family; I 97.0 0.059 1.3E-06 50.0 16.6 148 140-336 42-199 (201)
295 PLN02274 inosine-5'-monophosph 97.0 0.047 1E-06 57.8 18.0 70 231-336 248-317 (505)
296 cd02933 OYE_like_FMN Old yello 97.0 0.032 7E-07 56.1 16.0 99 137-250 206-314 (338)
297 PF04131 NanE: Putative N-acet 96.9 0.01 2.2E-07 54.2 10.9 110 166-336 2-119 (192)
298 cd04734 OYE_like_3_FMN Old yel 96.9 0.037 7.9E-07 55.8 15.6 114 135-250 193-315 (343)
299 cd04727 pdxS PdxS is a subunit 96.9 0.048 1E-06 52.8 15.5 120 168-336 20-139 (283)
300 TIGR01361 DAHP_synth_Bsub phos 96.9 0.15 3.1E-06 49.5 19.0 146 134-336 75-229 (260)
301 cd02932 OYE_YqiM_FMN Old yello 96.8 0.048 1E-06 54.7 16.0 107 134-249 205-319 (336)
302 cd02801 DUS_like_FMN Dihydrour 96.8 0.023 5.1E-07 53.4 12.7 105 133-250 108-213 (231)
303 PLN02898 HMP-P kinase/thiamin- 96.8 0.058 1.3E-06 57.2 16.9 78 234-342 401-481 (502)
304 TIGR03569 NeuB_NnaB N-acetylne 96.7 0.42 9.2E-06 47.8 21.8 170 134-361 75-258 (329)
305 cd00381 IMPDH IMPDH: The catal 96.7 0.043 9.4E-07 54.8 14.9 129 149-336 34-163 (325)
306 TIGR00734 hisAF_rel hisA/hisF 96.7 0.012 2.6E-07 55.6 10.0 86 229-351 35-122 (221)
307 cd04740 DHOD_1B_like Dihydroor 96.7 0.1 2.3E-06 51.2 17.0 112 133-250 139-260 (296)
308 PRK05567 inosine 5'-monophosph 96.7 0.15 3.2E-06 53.9 19.1 69 232-336 229-297 (486)
309 PRK00230 orotidine 5'-phosphat 96.7 0.043 9.3E-07 52.1 13.7 150 140-354 46-227 (230)
310 TIGR00736 nifR3_rel_arch TIM-b 96.7 0.033 7E-07 52.9 12.5 100 133-250 120-220 (231)
311 TIGR00222 panB 3-methyl-2-oxob 96.6 0.28 6.1E-06 47.4 18.9 143 58-250 15-180 (263)
312 TIGR00343 pyridoxal 5'-phospha 96.6 0.07 1.5E-06 51.7 14.5 130 151-336 12-141 (287)
313 cd00377 ICL_PEPM Members of th 96.6 0.13 2.8E-06 49.2 16.3 185 169-380 22-226 (243)
314 PRK07114 keto-hydroxyglutarate 96.6 0.016 3.5E-07 54.6 9.8 89 209-334 8-96 (222)
315 PLN02591 tryptophan synthase 96.6 0.04 8.6E-07 53.0 12.6 166 63-252 9-220 (250)
316 PRK12858 tagatose 1,6-diphosph 96.5 0.031 6.7E-07 56.1 12.2 173 169-372 112-313 (340)
317 PLN02424 ketopantoate hydroxym 96.5 0.25 5.4E-06 49.1 18.0 145 58-251 35-203 (332)
318 PRK01130 N-acetylmannosamine-6 96.5 0.07 1.5E-06 50.1 13.8 119 161-336 21-146 (221)
319 cd00331 IGPS Indole-3-glycerol 96.5 0.025 5.4E-07 52.9 10.7 84 231-352 32-115 (217)
320 PRK11572 copper homeostasis pr 96.5 0.3 6.6E-06 46.7 18.0 149 140-338 43-200 (248)
321 PRK11320 prpB 2-methylisocitra 96.5 0.15 3.2E-06 50.1 16.3 186 169-380 30-234 (292)
322 cd00945 Aldolase_Class_I Class 96.5 0.081 1.8E-06 48.0 13.8 129 161-338 11-151 (201)
323 CHL00200 trpA tryptophan synth 96.5 0.051 1.1E-06 52.7 12.8 167 63-253 22-234 (263)
324 PRK08185 hypothetical protein; 96.5 0.65 1.4E-05 45.5 20.5 162 136-342 56-234 (283)
325 PRK06256 biotin synthase; Vali 96.5 0.12 2.5E-06 51.8 15.9 194 133-364 125-323 (336)
326 PRK10415 tRNA-dihydrouridine s 96.5 0.028 6E-07 56.1 11.3 105 133-250 118-224 (321)
327 TIGR01303 IMP_DH_rel_1 IMP deh 96.4 0.11 2.4E-06 54.5 16.1 111 134-255 251-362 (475)
328 TIGR01305 GMP_reduct_1 guanosi 96.4 0.11 2.4E-06 51.7 15.0 132 149-336 45-178 (343)
329 PF01207 Dus: Dihydrouridine s 96.4 0.018 4E-07 57.1 9.7 105 133-250 107-213 (309)
330 cd02930 DCR_FMN 2,4-dienoyl-Co 96.4 0.08 1.7E-06 53.5 14.5 108 135-250 189-306 (353)
331 cd00952 CHBPH_aldolase Trans-o 96.4 1.1 2.4E-05 44.4 22.4 97 133-241 60-161 (309)
332 TIGR00737 nifR3_yhdG putative 96.4 0.036 7.9E-07 55.2 11.7 105 133-250 116-222 (319)
333 cd00956 Transaldolase_FSA Tran 96.4 0.22 4.7E-06 46.7 16.2 146 140-341 43-190 (211)
334 PRK07565 dihydroorotate dehydr 96.4 0.039 8.5E-07 55.3 11.9 111 203-339 86-200 (334)
335 COG0800 Eda 2-keto-3-deoxy-6-p 96.3 0.022 4.7E-07 53.0 8.9 86 208-334 5-90 (211)
336 cd04735 OYE_like_4_FMN Old yel 96.3 0.099 2.2E-06 52.9 14.6 103 137-250 198-313 (353)
337 PF09370 TIM-br_sig_trns: TIM- 96.3 0.17 3.7E-06 48.6 15.1 165 142-342 74-252 (268)
338 TIGR01306 GMP_reduct_2 guanosi 96.3 0.19 4.1E-06 50.1 16.1 129 149-336 34-165 (321)
339 PRK07998 gatY putative fructos 96.3 0.69 1.5E-05 45.3 19.7 163 133-342 59-235 (283)
340 TIGR02317 prpB methylisocitrat 96.3 0.22 4.8E-06 48.8 16.3 184 169-380 26-229 (285)
341 PRK12376 putative translaldola 96.3 0.54 1.2E-05 44.8 18.4 157 139-342 48-205 (236)
342 KOG4175 Tryptophan synthase al 96.3 0.63 1.4E-05 42.8 17.7 210 64-341 26-240 (268)
343 TIGR00078 nadC nicotinate-nucl 96.3 0.044 9.5E-07 53.2 11.1 90 206-342 164-255 (265)
344 PRK05096 guanosine 5'-monophos 96.3 0.1 2.2E-06 51.9 13.6 132 149-336 46-179 (346)
345 PRK07428 nicotinate-nucleotide 96.3 0.061 1.3E-06 52.8 12.1 34 307-341 243-276 (288)
346 COG0042 tRNA-dihydrouridine sy 96.3 0.04 8.7E-07 55.0 11.1 106 133-250 120-228 (323)
347 PRK09517 multifunctional thiam 96.2 0.21 4.5E-06 55.7 17.7 51 287-342 150-200 (755)
348 PRK12656 fructose-6-phosphate 96.2 0.74 1.6E-05 43.5 18.8 153 133-342 40-195 (222)
349 TIGR00262 trpA tryptophan synt 96.2 0.085 1.8E-06 50.9 12.8 166 64-252 18-229 (256)
350 cd04729 NanE N-acetylmannosami 96.2 0.17 3.6E-06 47.5 14.6 119 161-336 25-150 (219)
351 cd08210 RLP_RrRLP Ribulose bis 96.2 0.13 2.7E-06 52.3 14.5 103 140-250 117-225 (364)
352 PRK08227 autoinducer 2 aldolas 96.2 0.18 3.8E-06 48.9 14.7 142 147-342 72-232 (264)
353 PRK08255 salicylyl-CoA 5-hydro 96.2 0.15 3.3E-06 56.8 16.4 107 136-250 604-717 (765)
354 PRK08508 biotin synthase; Prov 96.2 0.46 9.9E-06 46.4 17.9 193 133-364 74-273 (279)
355 PRK10605 N-ethylmaleimide redu 96.2 0.15 3.3E-06 51.7 15.0 98 137-250 213-321 (362)
356 COG0329 DapA Dihydrodipicolina 96.2 0.058 1.3E-06 53.3 11.6 87 160-255 22-111 (299)
357 cd08205 RuBisCO_IV_RLP Ribulos 96.2 0.065 1.4E-06 54.5 12.2 109 140-254 121-234 (367)
358 cd02810 DHOD_DHPD_FMN Dihydroo 96.1 0.079 1.7E-06 51.8 12.5 114 133-250 147-272 (289)
359 COG3010 NanE Putative N-acetyl 96.1 0.36 7.9E-06 44.6 15.6 128 150-336 15-154 (229)
360 COG0159 TrpA Tryptophan syntha 96.1 0.081 1.8E-06 51.0 11.8 168 59-251 21-234 (265)
361 cd04726 KGPDC_HPS 3-Keto-L-gul 96.1 0.22 4.8E-06 45.8 14.5 127 152-336 3-133 (202)
362 cd01573 modD_like ModD; Quinol 96.1 0.049 1.1E-06 53.0 10.5 31 307-338 230-260 (272)
363 cd00408 DHDPS-like Dihydrodipi 96.1 0.21 4.5E-06 48.6 14.8 85 160-253 15-102 (281)
364 PRK07807 inosine 5-monophospha 96.0 0.16 3.4E-06 53.5 14.5 110 135-255 254-364 (479)
365 TIGR02134 transald_staph trans 96.0 0.91 2E-05 43.2 18.2 155 140-342 49-205 (236)
366 PRK13957 indole-3-glycerol-pho 96.0 0.088 1.9E-06 50.4 11.4 75 231-341 62-136 (247)
367 TIGR03249 KdgD 5-dehydro-4-deo 95.9 0.088 1.9E-06 51.9 11.7 86 160-254 23-110 (296)
368 TIGR02319 CPEP_Pphonmut carbox 95.9 0.61 1.3E-05 45.9 17.3 190 169-386 29-239 (294)
369 cd00951 KDGDH 5-dehydro-4-deox 95.9 0.087 1.9E-06 51.7 11.5 86 160-254 18-105 (289)
370 PRK05581 ribulose-phosphate 3- 95.9 0.35 7.5E-06 45.1 15.1 88 152-252 6-93 (220)
371 PRK07259 dihydroorotate dehydr 95.9 0.12 2.5E-06 51.1 12.4 112 133-250 142-263 (301)
372 TIGR03128 RuMP_HxlA 3-hexulose 95.9 0.21 4.5E-06 46.2 13.4 126 152-338 2-135 (206)
373 cd04747 OYE_like_5_FMN Old yel 95.9 0.18 3.9E-06 51.2 13.8 103 136-249 197-327 (361)
374 COG2513 PrpB PEP phosphonomuta 95.9 0.24 5.2E-06 48.2 13.9 184 169-378 31-232 (289)
375 PRK05742 nicotinate-nucleotide 95.9 0.087 1.9E-06 51.4 11.1 44 291-340 222-265 (277)
376 TIGR01182 eda Entner-Doudoroff 95.9 0.041 9E-07 51.2 8.4 66 230-334 20-85 (204)
377 COG3684 LacD Tagatose-1,6-bisp 95.8 0.15 3.3E-06 48.6 11.9 160 169-370 117-294 (306)
378 PRK03620 5-dehydro-4-deoxygluc 95.8 0.1 2.2E-06 51.6 11.7 86 160-254 25-112 (303)
379 PF00793 DAHP_synth_1: DAHP sy 95.8 0.2 4.4E-06 48.7 13.4 198 58-338 15-236 (270)
380 cd03174 DRE_TIM_metallolyase D 95.8 0.7 1.5E-05 44.2 17.0 162 160-357 16-187 (265)
381 cd04738 DHOD_2_like Dihydrooro 95.8 0.11 2.4E-06 51.9 11.7 114 133-250 182-309 (327)
382 cd00952 CHBPH_aldolase Trans-o 95.7 0.13 2.7E-06 51.1 11.9 85 160-253 26-113 (309)
383 PRK05437 isopentenyl pyrophosp 95.7 0.52 1.1E-05 47.7 16.4 150 149-337 60-218 (352)
384 PRK08072 nicotinate-nucleotide 95.7 0.12 2.6E-06 50.5 11.2 91 206-340 174-264 (277)
385 PRK05718 keto-hydroxyglutarate 95.7 0.074 1.6E-06 49.9 9.5 86 209-335 8-93 (212)
386 TIGR02320 PEP_mutase phosphoen 95.7 1.4 3E-05 43.2 18.8 193 169-386 22-246 (285)
387 PRK07709 fructose-bisphosphate 95.7 2.4 5.2E-05 41.6 20.6 164 134-342 61-239 (285)
388 PRK06015 keto-hydroxyglutarate 95.7 0.05 1.1E-06 50.5 8.1 66 230-334 16-81 (201)
389 cd00947 TBP_aldolase_IIB Tagat 95.6 2.4 5.3E-05 41.4 20.3 164 133-342 54-232 (276)
390 COG4981 Enoyl reductase domain 95.6 0.59 1.3E-05 49.0 16.2 48 287-341 200-258 (717)
391 cd01572 QPRTase Quinolinate ph 95.6 0.11 2.4E-06 50.5 10.6 87 208-340 170-258 (268)
392 cd08207 RLP_NonPhot Ribulose b 95.6 0.19 4.2E-06 51.6 12.8 102 140-249 134-242 (406)
393 TIGR01858 tag_bisphos_ald clas 95.6 2.5 5.4E-05 41.4 20.0 164 133-342 57-236 (282)
394 TIGR01037 pyrD_sub1_fam dihydr 95.6 0.23 4.9E-06 48.9 13.1 112 133-250 142-263 (300)
395 TIGR02321 Pphn_pyruv_hyd phosp 95.6 0.59 1.3E-05 45.9 15.7 159 169-355 28-203 (290)
396 TIGR03326 rubisco_III ribulose 95.5 0.33 7.2E-06 50.0 14.4 97 148-249 142-243 (412)
397 TIGR00433 bioB biotin syntheta 95.5 0.8 1.7E-05 44.7 16.7 180 134-347 97-284 (296)
398 PRK09485 mmuM homocysteine met 95.5 2.2 4.8E-05 42.2 19.7 69 167-251 144-221 (304)
399 cd06556 ICL_KPHMT Members of t 95.5 0.64 1.4E-05 44.4 15.3 140 168-355 24-191 (240)
400 PF03740 PdxJ: Pyridoxal phosp 95.5 1.4 3E-05 42.0 17.0 138 164-344 23-160 (239)
401 PRK06852 aldolase; Validated 95.5 0.42 9E-06 47.2 14.2 91 217-342 166-271 (304)
402 cd00950 DHDPS Dihydrodipicolin 95.4 0.31 6.7E-06 47.5 13.4 84 160-252 18-104 (284)
403 PRK08385 nicotinate-nucleotide 95.4 0.21 4.6E-06 48.7 12.0 94 206-340 169-263 (278)
404 cd02911 arch_FMN Archeal FMN-b 95.4 0.24 5.3E-06 47.1 12.2 96 133-250 125-220 (233)
405 PRK05286 dihydroorotate dehydr 95.4 0.14 3E-06 51.6 11.0 114 133-250 191-318 (344)
406 cd04739 DHOD_like Dihydroorota 95.4 0.25 5.4E-06 49.4 12.7 111 134-250 149-266 (325)
407 cd01568 QPRTase_NadC Quinolina 95.4 0.2 4.2E-06 48.8 11.6 32 307-339 227-258 (269)
408 PRK09195 gatY tagatose-bisphos 95.4 3.1 6.6E-05 40.8 20.4 164 133-342 59-238 (284)
409 cd00959 DeoC 2-deoxyribose-5-p 95.4 0.28 6E-06 45.6 12.1 100 133-247 100-200 (203)
410 cd00953 KDG_aldolase KDG (2-ke 95.4 3 6.5E-05 40.7 24.9 158 133-352 51-213 (279)
411 cd04725 OMP_decarboxylase_like 95.3 0.65 1.4E-05 43.6 14.6 142 139-342 41-206 (216)
412 PLN02979 glycolate oxidase 95.3 0.49 1.1E-05 47.8 14.3 143 166-337 89-252 (366)
413 TIGR00683 nanA N-acetylneurami 95.3 0.5 1.1E-05 46.5 14.3 85 160-253 18-106 (290)
414 cd06557 KPHMT-like Ketopantoat 95.3 0.19 4.1E-06 48.5 11.0 82 168-251 24-112 (254)
415 PRK12737 gatY tagatose-bisphos 95.3 3.3 7.2E-05 40.6 20.1 164 133-342 59-238 (284)
416 COG1902 NemA NADH:flavin oxido 95.2 0.5 1.1E-05 48.0 14.4 103 139-249 205-317 (363)
417 cd02929 TMADH_HD_FMN Trimethyl 95.2 0.77 1.7E-05 46.7 15.9 107 136-250 203-319 (370)
418 PRK12738 kbaY tagatose-bisphos 95.2 3.4 7.4E-05 40.5 20.3 164 133-342 59-238 (286)
419 PF00290 Trp_syntA: Tryptophan 95.2 0.22 4.8E-06 48.1 11.1 165 64-253 18-229 (259)
420 PF01729 QRPTase_C: Quinolinat 95.2 0.24 5.3E-06 44.7 10.7 93 206-341 66-160 (169)
421 TIGR00674 dapA dihydrodipicoli 95.2 0.44 9.5E-06 46.6 13.4 85 160-253 16-103 (285)
422 PLN02417 dihydrodipicolinate s 95.1 3.5 7.6E-05 40.2 22.4 95 133-241 53-151 (280)
423 PF04481 DUF561: Protein of un 95.1 0.73 1.6E-05 43.0 13.6 151 57-250 61-214 (242)
424 PRK04147 N-acetylneuraminate l 95.1 0.26 5.7E-06 48.4 11.7 86 160-254 21-110 (293)
425 PF01116 F_bP_aldolase: Fructo 95.1 3.8 8.2E-05 40.3 21.1 167 133-342 58-241 (287)
426 cd02940 DHPD_FMN Dihydropyrimi 95.1 0.33 7.1E-06 47.9 12.3 112 133-250 153-281 (299)
427 cd00954 NAL N-Acetylneuraminic 95.0 0.7 1.5E-05 45.3 14.3 86 160-254 18-107 (288)
428 PLN02389 biotin synthase 95.0 1.4 3.1E-05 45.0 16.9 194 132-366 151-355 (379)
429 cd03329 MR_like_4 Mandelate ra 95.0 0.81 1.8E-05 46.4 15.1 135 149-336 125-271 (368)
430 PRK11815 tRNA-dihydrouridine s 94.9 0.9 1.9E-05 45.6 15.2 109 134-250 119-233 (333)
431 PRK05458 guanosine 5'-monophos 94.9 0.68 1.5E-05 46.3 13.9 129 149-336 37-168 (326)
432 PRK04208 rbcL ribulose bisopho 94.8 0.41 8.9E-06 50.1 12.7 104 140-249 151-260 (468)
433 cd04741 DHOD_1A_like Dihydroor 94.8 0.55 1.2E-05 46.2 13.1 113 133-250 142-272 (294)
434 PF00701 DHDPS: Dihydrodipicol 94.8 0.33 7.2E-06 47.5 11.4 85 160-253 19-106 (289)
435 PRK07094 biotin synthase; Prov 94.7 0.98 2.1E-05 44.8 14.9 173 133-335 102-279 (323)
436 PRK02227 hypothetical protein; 94.7 1.6 3.5E-05 41.4 15.2 139 152-338 3-153 (238)
437 TIGR02313 HpaI-NOT-DapA 2,4-di 94.7 0.14 3.1E-06 50.3 8.7 82 232-342 23-108 (294)
438 cd08209 RLP_DK-MTP-1-P-enolase 94.7 0.56 1.2E-05 48.0 13.1 104 140-249 115-223 (391)
439 TIGR01232 lacD tagatose 1,6-di 94.7 0.35 7.6E-06 47.8 11.0 63 307-370 241-311 (325)
440 cd01573 modD_like ModD; Quinol 94.7 0.24 5.3E-06 48.2 10.0 88 137-251 171-259 (272)
441 PRK04161 tagatose 1,6-diphosph 94.7 0.71 1.5E-05 45.7 13.1 64 307-371 242-313 (329)
442 TIGR03217 4OH_2_O_val_ald 4-hy 94.6 2.6 5.6E-05 42.3 17.5 88 160-251 21-108 (333)
443 PF09370 TIM-br_sig_trns: TIM- 94.6 0.28 6.2E-06 47.1 10.0 176 135-342 2-183 (268)
444 PRK08610 fructose-bisphosphate 94.6 5 0.00011 39.4 20.3 164 134-342 61-239 (286)
445 PRK15108 biotin synthase; Prov 94.6 2.8 6.1E-05 42.2 17.8 192 133-365 110-312 (345)
446 TIGR01740 pyrF orotidine 5'-ph 94.6 1.7 3.6E-05 40.7 15.1 141 140-342 42-202 (213)
447 TIGR02151 IPP_isom_2 isopenten 94.6 1.9 4.1E-05 43.3 16.4 150 149-337 53-211 (333)
448 COG0502 BioB Biotin synthase a 94.5 1.3 2.7E-05 44.4 14.7 176 133-343 117-302 (335)
449 TIGR00126 deoC deoxyribose-pho 94.5 0.51 1.1E-05 44.2 11.4 101 132-247 100-201 (211)
450 TIGR03586 PseI pseudaminic aci 94.5 5.3 0.00012 40.0 19.3 168 135-359 77-255 (327)
451 PRK07428 nicotinate-nucleotide 94.5 0.31 6.7E-06 47.9 10.3 115 113-254 156-275 (288)
452 PRK09722 allulose-6-phosphate 94.5 3.1 6.6E-05 39.5 16.6 82 151-250 4-89 (229)
453 PLN02334 ribulose-phosphate 3- 94.5 2.2 4.7E-05 40.3 15.8 88 151-251 9-96 (229)
454 PRK03170 dihydrodipicolinate s 94.5 0.41 9E-06 46.9 11.2 85 160-253 19-106 (292)
455 cd00953 KDG_aldolase KDG (2-ke 94.4 1.5 3.3E-05 42.7 15.1 85 159-253 16-101 (279)
456 PRK09196 fructose-1,6-bisphosp 94.4 5.7 0.00012 40.1 19.1 173 134-342 60-283 (347)
457 TIGR00742 yjbN tRNA dihydrouri 94.4 0.69 1.5E-05 46.1 12.7 110 133-250 108-223 (318)
458 COG5016 Pyruvate/oxaloacetate 94.4 0.7 1.5E-05 46.9 12.5 76 160-248 153-229 (472)
459 COG3142 CutC Uncharacterized p 94.4 0.55 1.2E-05 44.1 11.1 73 168-252 13-95 (241)
460 PRK08385 nicotinate-nucleotide 94.4 0.62 1.3E-05 45.5 12.0 117 113-254 144-263 (278)
461 TIGR00167 cbbA ketose-bisphosp 94.4 5.7 0.00012 39.0 20.0 166 133-342 60-242 (288)
462 PRK14042 pyruvate carboxylase 94.4 2.3 5E-05 46.0 17.3 174 139-364 65-255 (596)
463 PRK00311 panB 3-methyl-2-oxobu 94.4 2.1 4.5E-05 41.6 15.5 79 168-251 27-115 (264)
464 PF02548 Pantoate_transf: Keto 94.3 1.7 3.7E-05 41.9 14.7 137 69-251 24-183 (261)
465 TIGR01521 FruBisAldo_II_B fruc 94.3 5.9 0.00013 39.9 19.0 174 133-342 57-281 (347)
466 PRK12331 oxaloacetate decarbox 94.3 3.3 7.2E-05 43.3 18.0 146 166-364 99-255 (448)
467 cd07944 DRE_TIM_HOA_like 4-hyd 94.3 4.7 0.0001 39.1 18.1 86 160-250 17-102 (266)
468 PLN02535 glycolate oxidase 94.3 1.5 3.3E-05 44.5 14.9 146 162-336 88-251 (364)
469 PRK07896 nicotinate-nucleotide 94.3 0.59 1.3E-05 45.9 11.6 92 206-340 186-278 (289)
470 PRK12330 oxaloacetate decarbox 94.3 4.5 9.7E-05 42.8 18.8 179 138-365 65-259 (499)
471 cd02809 alpha_hydroxyacid_oxid 94.2 1.3 2.8E-05 43.7 14.2 132 149-336 64-200 (299)
472 PF13714 PEP_mutase: Phosphoen 94.2 4.2 9E-05 38.9 17.1 181 169-383 22-222 (238)
473 PRK06559 nicotinate-nucleotide 94.2 0.29 6.2E-06 48.0 9.3 89 206-340 183-273 (290)
474 cd02922 FCB2_FMN Flavocytochro 94.2 1.9 4E-05 43.5 15.4 161 149-337 64-242 (344)
475 PRK05742 nicotinate-nucleotide 94.2 0.52 1.1E-05 46.0 11.1 113 113-254 150-265 (277)
476 PF00682 HMGL-like: HMGL-like 94.2 1.1 2.5E-05 42.2 13.3 161 160-358 11-179 (237)
477 PRK05835 fructose-bisphosphate 94.2 6.5 0.00014 39.0 20.8 163 134-342 59-261 (307)
478 KOG4201 Anthranilate synthase 94.2 0.31 6.6E-06 45.3 8.7 36 307-342 237-272 (289)
479 PLN02417 dihydrodipicolinate s 94.2 0.23 5.1E-06 48.5 8.7 85 160-253 19-106 (280)
480 PRK07896 nicotinate-nucleotide 94.1 0.48 1E-05 46.5 10.7 115 113-253 160-277 (289)
481 PRK12399 tagatose 1,6-diphosph 94.1 0.94 2E-05 44.8 12.6 63 307-370 240-310 (324)
482 PLN02716 nicotinate-nucleotide 94.1 0.37 7.9E-06 47.6 9.8 102 206-340 186-294 (308)
483 TIGR01334 modD putative molybd 94.1 0.58 1.3E-05 45.7 11.1 91 205-338 174-265 (277)
484 PRK09140 2-dehydro-3-deoxy-6-p 94.1 0.24 5.3E-06 46.2 8.2 70 230-337 22-91 (206)
485 cd07944 DRE_TIM_HOA_like 4-hyd 94.1 1.5 3.2E-05 42.6 14.0 104 132-249 107-214 (266)
486 PF00724 Oxidored_FMN: NADH:fl 94.0 0.18 3.8E-06 50.8 7.8 103 138-249 204-320 (341)
487 PF00682 HMGL-like: HMGL-like 94.0 1.7 3.6E-05 41.1 14.1 97 139-249 113-212 (237)
488 cd08213 RuBisCO_large_III Ribu 94.0 0.97 2.1E-05 46.6 13.1 170 140-355 122-313 (412)
489 PLN02493 probable peroxisomal 94.0 1.5 3.2E-05 44.5 14.3 143 166-337 90-253 (367)
490 PRK12857 fructose-1,6-bisphosp 94.0 6.8 0.00015 38.4 20.2 164 133-342 59-238 (284)
491 PRK06106 nicotinate-nucleotide 94.0 0.71 1.5E-05 45.1 11.5 89 206-340 180-270 (281)
492 PF01680 SOR_SNZ: SOR/SNZ fami 94.0 0.6 1.3E-05 42.2 9.9 153 149-357 14-170 (208)
493 KOG4175 Tryptophan synthase al 93.9 1.3 2.8E-05 40.9 12.1 112 136-251 5-131 (268)
494 PRK08318 dihydropyrimidine deh 93.9 0.56 1.2E-05 48.5 11.5 112 133-250 153-282 (420)
495 cd04722 TIM_phosphate_binding 93.9 1.6 3.4E-05 38.9 13.1 134 163-340 12-147 (200)
496 COG0135 TrpF Phosphoribosylant 93.9 3.4 7.3E-05 38.6 15.3 35 307-342 154-189 (208)
497 cd02811 IDI-2_FMN Isopentenyl- 93.9 2.8 6.1E-05 41.9 16.0 150 149-337 52-210 (326)
498 PRK09016 quinolinate phosphori 93.9 0.49 1.1E-05 46.5 10.2 162 63-261 127-291 (296)
499 PRK04452 acetyl-CoA decarbonyl 93.8 3.5 7.5E-05 41.1 16.2 176 161-361 76-316 (319)
500 cd07943 DRE_TIM_HOA 4-hydroxy- 93.8 1.9 4.2E-05 41.6 14.3 103 134-250 112-217 (263)
No 1
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=100.00 E-value=1.9e-82 Score=635.48 Aligned_cols=381 Identities=87% Similarity=1.358 Sum_probs=353.9
Q ss_pred CCCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccc
Q 014581 41 ASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQII 120 (422)
Q Consensus 41 ~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~ 120 (422)
...|+||+|+|+|++|+|||++||||.+.+.+.+++++++|||+||+||++.++++.+|+.||+.++..++.+....|++
T Consensus 5 ~~~~~dLst~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~i 84 (385)
T PLN02495 5 AASEPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVI 84 (385)
T ss_pred ccCCCcceEEECCEEcCCCcEeCCccCCCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccccccc
Confidence 36789999999999999999999999999999999999999999999999998767899999999876555322334789
Q ss_pred ccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccc
Q 014581 121 GWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVG 200 (422)
Q Consensus 121 Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~ 200 (422)
||+|+++++++++++|+++++++++++|+.|+|+||+++.++++|.+++++++++|+|+||||+||||+++.+++|..++
T Consensus 85 Gl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g 164 (385)
T PLN02495 85 GWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG 164 (385)
T ss_pred cccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc
Confidence 99999999999999999999999888888999999986689999999999999999999999999999988888899999
Q ss_pred cChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCC
Q 014581 201 QDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYS 280 (422)
Q Consensus 201 ~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~s 280 (422)
++++.++++++++++.+++||+|||+|+++++.++++++.++|+|||+++||+.++++||+++.+|.+...+++..||+|
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlS 244 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYS 244 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999877889999988877554456789999
Q ss_pred CCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHH
Q 014581 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKM 360 (422)
Q Consensus 281 G~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~ 360 (422)
|++++|++++.|+++++.+..+++ .++||||+|||.+++||.++|++||++||+||+++++||.++++|+++|++||++
T Consensus 245 G~alkpiAl~~v~~i~~~~~~~~~-~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~ 323 (385)
T PLN02495 245 SKAVRPIALAKVMAIAKMMKSEFP-EDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMKK 323 (385)
T ss_pred chhhhHHHHHHHHHHHHHHhhhcc-CCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHHH
Confidence 999999999999999998753221 2599999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHhhcCCcccCCChhHHHHHhHHHHhHHHhhhcCCCCCCCCCccchhhhhhhcccC
Q 014581 361 HNFSSIEDFRGASIEYFTTHTELVRMQQEAIQQRKAVRKGLQSDKDWTGDGFVKETLSMVSN 422 (422)
Q Consensus 361 ~G~~si~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (422)
|||++++|++|.++++++++.++.++++..|++++|+.||+-+|+.|+|++|+|++.||++|
T Consensus 324 ~G~~si~e~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
T PLN02495 324 HNFSSIEDFRGASLPYFTTHTDLVQRQKEAIRQRKAIRKGLASDKDWTGDGFVKETESMVSN 385 (385)
T ss_pred cCCCCHHHHhCcCCcccCcHHHhhHHHHHhhCHHHHhhhcccccccccccchhhhhHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 2
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=100.00 E-value=3e-64 Score=516.88 Aligned_cols=350 Identities=47% Similarity=0.753 Sum_probs=313.4
Q ss_pred CCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCC-CeeEeecCCCCCCCccccccc
Q 014581 44 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVT-PRYARLRAGANGSAKGQIIGW 122 (422)
Q Consensus 44 ~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~-pr~~~~~~~~~~~a~~~~~Gl 122 (422)
|.||+|+|+|++|+|||++|||+.+.+.+.+.+++++|||++|+||++ + +.+|+. ||++++..+. .+.+||
T Consensus 1 m~~L~~~~~Gl~l~nPv~~aag~~~~~~~~~~~~~~~g~Gavv~kti~--~-~~gn~~~pr~~~~~~~~-----~~~~g~ 72 (420)
T PRK08318 1 MADLSITFCGIKSPNPFWLASAPPTNKYYNVARAFEAGWGGVVWKTLG--P-PIVNVSSPRFGALVKED-----RRFIGF 72 (420)
T ss_pred CCCceEEECCEecCCCcEeCCcCCCCCHHHHHHHHHhCCCEEEEeecC--C-CCCCCCCCeEEEecCCC-----cccccc
Confidence 569999999999999999999999888888889889999999999999 3 789999 9999885543 677999
Q ss_pred ccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccccc
Q 014581 123 ENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQ 201 (422)
Q Consensus 123 ~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~ 201 (422)
+|.|.++++++++|++.++++++..++.|+++||. +. ++++|.++++.++++|+|+||||+||||+...+++|..+++
T Consensus 73 ~n~~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~ 151 (420)
T PRK08318 73 NNIELITDRPLEVNLREIRRVKRDYPDRALIASIM-VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQ 151 (420)
T ss_pred cCcccccccCHHHHHHHHHHHHhhCCCceEEEEec-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccC
Confidence 99999999999999998888876666789999997 55 89999999999999999999999999996555678899999
Q ss_pred ChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 202 DCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 202 ~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
+++.+.++++++++.+++||+|||+|+++++.++++.++++|+|+|+++||+.+++.+|+++.+..|.+.+....||+||
T Consensus 152 ~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG 231 (420)
T PRK08318 152 VPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCG 231 (420)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999998878899987654443323345799999
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHc
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMH 361 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~ 361 (422)
++++|++|++|+++++.+.. .++||||+|||.|++|++++|++|||+||+||+++++||.++++|.++|+.||+++
T Consensus 232 ~a~~p~~l~~v~~~~~~~~~----~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~ 307 (420)
T PRK08318 232 PAVKPIALNMVAEIARDPET----RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEK 307 (420)
T ss_pred hhhhHHHHHHHHHHHhcccc----CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHc
Confidence 99999999999999987621 16999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcCCcccCCChhHHHHHhHH--HHhHHHhhhcCCCCCCC
Q 014581 362 NFSSIEDFRGASIEYFTTHTELVRMQQE--AIQQRKAVRKGLQSDKD 406 (422)
Q Consensus 362 G~~si~d~~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 406 (422)
||.+++|++|..+++..++.++.+.++. .++..+|+.|+.|...|
T Consensus 308 g~~si~e~iG~~~~~~~~~~~l~~~~~~~~~~~~~~C~~C~~C~~~C 354 (420)
T PRK08318 308 GFASLEDMVGLAVPNVTDWEDLDLNYIVYARIDQDKCIGCGRCYIAC 354 (420)
T ss_pred CcchHHHHhcccccCcCChhhcccccceEEEECHHHCCCCCcccccC
Confidence 9999999999988877777777665555 78899999999999766
No 3
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-63 Score=483.48 Aligned_cols=306 Identities=38% Similarity=0.557 Sum_probs=279.7
Q ss_pred CcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccc
Q 014581 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENI 125 (422)
Q Consensus 46 dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~ 125 (422)
+|+++++|++|+|||++|||+++++++.+..+.+.|||++++||+|.++ |.||+.||+++++.+. +..|++||+|+
T Consensus 1 ~l~~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g~G~i~~ktvt~~p-q~Gnp~PR~~~l~~~~---~~iN~mG~~N~ 76 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPEP-QEGNPKPRLFRLPEDE---GLINRMGFNNP 76 (310)
T ss_pred CCceeecceecCCCCeEcccCCccCHHHHHHHHhcCCceEEecCCCCcC-CCCCCCCeEEEecCcc---cHHHhcCCCch
Confidence 5789999999999999999999889999999999999999999999997 8999999999998543 56999999999
Q ss_pred cccCCChHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCHHHHHHHHHHHHHhC-CCEEEEccCCCCCCCccccccccccC
Q 014581 126 ELISDRPLETMLKEFKQLKALY--PDKILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQD 202 (422)
Q Consensus 126 ~~~s~~~~e~~l~~i~~~k~~~--~~~pvi~si~~~~~~~~~~~~a~~~~~aG-aD~iElN~scP~~~~~~~~G~~l~~~ 202 (422)
+ .+.++++++..+.+. .+.+++.|.. +.+.++|.+++..+++++ +|++|+|+||||++. |.+++++
T Consensus 77 G------~~~~~~~l~~~~~~~~~~~~~i~~~~~-~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g----~~~l~~~ 145 (310)
T COG0167 77 G------ADAFLEELKLAKYEGKPIGVNIGKNKG-GPSEEAWADYARLLEEAGDADAIELNISCPNTPG----GRALGQD 145 (310)
T ss_pred h------HHHHHHHHHhhhhccCCcCcceEEecC-CCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCC----hhhhccC
Confidence 9 899999888776653 3567888886 667899999999999988 999999999999753 5678889
Q ss_pred hhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 203 CRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
++.+.++++++|+.+++||+|||+|+++++.++|+++.++|+|||+++||+..++.+|.++..|... ...||+||+
T Consensus 146 ~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~----~~~GGLSG~ 221 (310)
T COG0167 146 PELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLA----NETGGLSGP 221 (310)
T ss_pred HHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccC----cCCCCcCcc
Confidence 9999999999999999999999999999999999999999999999999998777789888766543 468999999
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcC
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHN 362 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G 362 (422)
+++|.++++|+++++.+.. ++|||++|||.|++||.|++++||++||+||+++++||.++++|.++|.+||+++|
T Consensus 222 ~ikp~al~~v~~l~~~~~~-----~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g 296 (310)
T COG0167 222 PLKPIALRVVAELYKRLGG-----DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKG 296 (310)
T ss_pred cchHHHHHHHHHHHHhcCC-----CCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcC
Confidence 9999999999999999843 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHhhcCCcc
Q 014581 363 FSSIEDFRGASIE 375 (422)
Q Consensus 363 ~~si~d~~G~~~~ 375 (422)
|+|++|++|.+++
T Consensus 297 ~~si~d~iG~~~~ 309 (310)
T COG0167 297 FESIQDIIGSALR 309 (310)
T ss_pred CCCHHHHhchhcc
Confidence 9999999998765
No 4
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=100.00 E-value=1.1e-60 Score=470.88 Aligned_cols=305 Identities=26% Similarity=0.347 Sum_probs=268.4
Q ss_pred CcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccc
Q 014581 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENI 125 (422)
Q Consensus 46 dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~ 125 (422)
||+|+|+|++|+|||++|||+++++.+.++++.++||||||+||+|.++ +.+|+.||+++.+. +..|++||+|.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~~~~e~~~~~~~~g~Gavv~ktit~~p-~~gn~~pr~~~~~~-----~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYCMTKEELEEVEASAAGAFVTKSATLEP-RPGNPEPRYADTPL-----GSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCcEEEeCccCCCC-CCCCCCCeEEECcc-----hhhccCCCCCc
Confidence 6899999999999999999999999999999999999999999999987 78999999998754 35899999998
Q ss_pred cccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhC-CCEEEEccCCCCCCCccccccccccChh
Q 014581 126 ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCR 204 (422)
Q Consensus 126 ~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aG-aD~iElN~scP~~~~~~~~G~~l~~~~~ 204 (422)
+ +++|+++++++++..++.|+|+||. +.+.++|.++++.++++| +|+||||+||||+.. +..++++++
T Consensus 75 g------~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~----~~~~g~d~~ 143 (310)
T PRK02506 75 G------FDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPG----KPQIAYDFE 143 (310)
T ss_pred C------HHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC----ccccccCHH
Confidence 8 8999999998887655799999996 788999999999999988 999999999999743 334567899
Q ss_pred HHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHH---HcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 205 LLEEVCGWINAKATVPVWAKMTPNITDITEPARVAL---RSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 205 ~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~---~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
.+.+++++|++.+++||+|||+|++ +..++++.+. +.|+++|+.+||+...+.+|+++.++... ....+||+||
T Consensus 144 ~~~~i~~~v~~~~~~Pv~vKlsp~~-~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~--~~~~~GGlSG 220 (310)
T PRK02506 144 TTEQILEEVFTYFTKPLGVKLPPYF-DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIK--PKNGFGGIGG 220 (310)
T ss_pred HHHHHHHHHHHhcCCccEEecCCCC-CHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCcccc--CCCCCCcCCc
Confidence 9999999999999999999999998 5567776654 55678888888875446678877666431 1235799999
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHc
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMH 361 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~ 361 (422)
++++|.++++|+++++.++. ++||||+|||.|++|+.|++++||++||+||+++++||.++.+|+++|++||+++
T Consensus 221 ~~i~p~al~~v~~~~~~~~~-----~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~ 295 (310)
T PRK02506 221 DYIKPTALANVRAFYQRLNP-----SIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEK 295 (310)
T ss_pred hhccHHHHHHHHHHHHhcCC-----CCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 99999999999999998743 6999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcCCccc
Q 014581 362 NFSSIEDFRGASIEY 376 (422)
Q Consensus 362 G~~si~d~~G~~~~~ 376 (422)
||++++|++|. +.+
T Consensus 296 g~~si~e~~G~-~~~ 309 (310)
T PRK02506 296 GYQSLEDFRGK-LKY 309 (310)
T ss_pred CCCCHHHHhCh-hhc
Confidence 99999999994 444
No 5
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.1e-62 Score=465.53 Aligned_cols=373 Identities=63% Similarity=0.924 Sum_probs=350.0
Q ss_pred CCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccc
Q 014581 43 AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGW 122 (422)
Q Consensus 43 ~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl 122 (422)
+.++.+++++|+++.|||.++++|.+.+++.+++.++.|||+++.||..++...+.|.+||+++.+-..+. ...+..-+
T Consensus 99 ~~ie~~vd~~G~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~~~-~~p~~~i~ 177 (471)
T KOG1799|consen 99 KSIEELVDWDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKRSC-FIPKRPIP 177 (471)
T ss_pred hhhhhhccccCccCCCccccCCCCCCccHHHHHhhhhcccchhheeeeecchhhheecccceeeccCCCCc-cccCCCcc
Confidence 44577799999999999999999999999999999999999999999999888889999999987653321 11222226
Q ss_pred ccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccC
Q 014581 123 ENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQD 202 (422)
Q Consensus 123 ~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~ 202 (422)
.|+++||+++.+.||..++++|+.+|.+.+|+|+++.++...|.+++.+.+++|+|.+|+|++|||.+.++++|.+++++
T Consensus 178 ~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~ergmgla~gq~ 257 (471)
T KOG1799|consen 178 TNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERGMGLALGQC 257 (471)
T ss_pred chhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCccccccceeccC
Confidence 79999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 203 CRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
|..+.|++.||+.-..+|++-|++|++++..++++.+...|+.||..+||+.+.|++|.++.+|.+.+.+++++||||++
T Consensus 258 p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~ 337 (471)
T KOG1799|consen 258 PIVDCEVCGWINAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYK 337 (471)
T ss_pred hhhhHHHhhhhhhccccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCcccc
Confidence 99999999999998999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcC
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHN 362 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G 362 (422)
+++|+++..|..|++.++ .+||.+.|||.+++|+.+++++|++.|||||+++.+|+..++.++.+|+++|.+||
T Consensus 338 AvRPIAl~~V~~IA~~m~------~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m~~~~ 411 (471)
T KOG1799|consen 338 AVRPIALAKVMNIAKMMK------EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMKQHN 411 (471)
T ss_pred ccchHHHHHHHHHHHHhh------cCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHHHHcC
Confidence 999999999999999985 68999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHhhcCCcccCCChhHHHHHhHHHHhHHHhhhcCCCCCCCCCccchhhhhhhcccC
Q 014581 363 FSSIEDFRGASIEYFTTHTELVRMQQEAIQQRKAVRKGLQSDKDWTGDGFVKETLSMVSN 422 (422)
Q Consensus 363 ~~si~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (422)
|++|++|+|.++.++.++.+++.+|+.+.+..+...-++-++++|+||+|+||+++||||
T Consensus 412 ~~ti~~~~G~SL~~~~~~~~~~~r~ke~~Eq~~A~K~~~~~~~D~~~~~F~~~~es~VS~ 471 (471)
T KOG1799|consen 412 FSTIEEFRGHSLQYFTTHTDLVKRQKEAVEQRKAEKRGLKSDKDWTGDGFVKETESMVSN 471 (471)
T ss_pred chhhhhccCcchhhhhccchHHHHHHHHHHHHHHHhhcccccccccCCccccCchhhccC
Confidence 999999999999999999999999999887777777899999999999999999999998
No 6
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=100.00 E-value=8.3e-59 Score=460.55 Aligned_cols=315 Identities=24% Similarity=0.348 Sum_probs=278.3
Q ss_pred CcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCc-ccCCCCCCeeEee----cCCCCCCCccccc
Q 014581 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDA-AKVINVTPRYARL----RAGANGSAKGQII 120 (422)
Q Consensus 46 dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~-~~~~~~~pr~~~~----~~~~~~~a~~~~~ 120 (422)
||+|+|+|++|+|||++|||+.+++++.++++.++||||||+||+|.++ .+.+|+.||+... ++. .+..|++
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~---~~~in~~ 77 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEA---LSYFPEY 77 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCCCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCc---ccccccc
Confidence 6899999999999999999999999999999999999999999999874 4789999987653 221 2568899
Q ss_pred ccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccc
Q 014581 121 GWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVG 200 (422)
Q Consensus 121 Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~ 200 (422)
||+|+| ++.|+++++++++.. +.|+++||+ +.++++|.++++.++++|+|+||||+|||+..+. .+|.+
T Consensus 78 g~~n~g------~~~~~~~i~~~~~~~-~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~-~~g~~-- 146 (325)
T cd04739 78 GRYNLG------PEEYLELIRRAKRAV-SIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPD-ISGAE-- 146 (325)
T ss_pred cccCcC------HHHHHHHHHHHHhcc-CCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCC-cccch--
Confidence 999988 899999999887654 789999997 6789999999999999999999999999764322 23332
Q ss_pred cChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCC
Q 014581 201 QDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYS 280 (422)
Q Consensus 201 ~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~s 280 (422)
.++.+.++++++++.+++||+||++|+++++.++++++.++|+|+|+++||+.+ +.+|+++.++.+ .+|+|
T Consensus 147 -~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~-~~id~~~~~~~~-------~~glS 217 (325)
T cd04739 147 -VEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQ-PDIDLETLEVVP-------NLLLS 217 (325)
T ss_pred -HHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCC-CCccccccceec-------CCCcC
Confidence 246788999999999999999999999989999999999999999999999865 677877765432 37799
Q ss_pred CCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHH
Q 014581 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKM 360 (422)
Q Consensus 281 G~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~ 360 (422)
|++++|.++++|+++++.+ ++|||++|||.|++|+.++|++||++||+||+++++||.++.+|+++|++||++
T Consensus 218 G~~~~~~al~~v~~v~~~~-------~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 218 SPAEIRLPLRWIAILSGRV-------KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEE 290 (325)
T ss_pred CccchhHHHHHHHHHHccc-------CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHH
Confidence 9999999999999998765 799999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHhhcC-CcccCCChhHHHHHhHHH
Q 014581 361 HNFSSIEDFRGA-SIEYFTTHTELVRMQQEA 390 (422)
Q Consensus 361 ~G~~si~d~~G~-~~~~~~~~~~~~~~~~~~ 390 (422)
+||++++|++|. +++++.+.+.++|.||+.
T Consensus 291 ~g~~~i~e~~G~~~~~~~~~~~~~~r~~~~~ 321 (325)
T cd04739 291 HGYESVQQLRGSMSQKNVPDPAAFERAQYMK 321 (325)
T ss_pred cCCCCHHHHhcccccccCCChhHhHHHHHHH
Confidence 999999999998 678888888999999983
No 7
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=1e-57 Score=448.44 Aligned_cols=299 Identities=57% Similarity=0.944 Sum_probs=271.9
Q ss_pred CcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccc
Q 014581 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENI 125 (422)
Q Consensus 46 dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~ 125 (422)
||+|+|+|++|+|||++|||+.+++.+.++++.++||||+|+||+|.+..+.+|+.||+++++.+. .|++||+|.
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~-----~n~~g~~n~ 75 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSG-----RGQIGFNNI 75 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCCCCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCc-----hhcccccCC
Confidence 689999999999999999999889999999999999999999999998337899999999987755 589999999
Q ss_pred cccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhH
Q 014581 126 ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRL 205 (422)
Q Consensus 126 ~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~ 205 (422)
|.+|+.+++.|++.++++++..++.|+++|+.+.+++++|.+++++++++|+|+||||+||||....+++|..++++++.
T Consensus 76 e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~ 155 (299)
T cd02940 76 ELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPEL 155 (299)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHH
Confidence 99999999999999988877655789999997434999999999999988999999999999986667778899999999
Q ss_pred HHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc
Q 014581 206 LEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285 (422)
Q Consensus 206 v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~ 285 (422)
+.++++++++.+++||+||++++++++.++++.+.++|+|+|+++||+.+.+++|+++.+|.+...+....||+||++++
T Consensus 156 ~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~ 235 (299)
T cd02940 156 VEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVK 235 (299)
T ss_pred HHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcc
Confidence 99999999999999999999999988999999999999999999999988778999988776543333457999999999
Q ss_pred hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|.++++|+++++.+.. ++|||++|||.+++|+.+++++|||+||+||+++.+||.++.+|+++|
T Consensus 236 p~~l~~v~~~~~~~~~-----~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~~l 299 (299)
T cd02940 236 PIALRAVSQIARAPEP-----GLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCTGL 299 (299)
T ss_pred hHHHHHHHHHHHhcCC-----CCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHhhhC
Confidence 9999999999998742 799999999999999999999999999999999999999999998874
No 8
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=100.00 E-value=4.7e-56 Score=437.54 Aligned_cols=300 Identities=33% Similarity=0.488 Sum_probs=269.6
Q ss_pred CcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccc
Q 014581 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENI 125 (422)
Q Consensus 46 dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~ 125 (422)
||+|+|+|++|+|||++|||+.+++.+.++.+.++|||+||+||++.++ +.+|+.||+++.+. +..|++|++|.
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~-~~g~~~pr~~~~~~-----~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEP-REGNPTPRIAETPG-----GMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCC-CCCCCCCcEEecCC-----ceeecCCCCCc
Confidence 6899999999999999999999899999999999999999999999987 78999999988764 34888899988
Q ss_pred cccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhC-CCEEEEccCCCCCCCccccccccccChh
Q 014581 126 ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCR 204 (422)
Q Consensus 126 ~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aG-aD~iElN~scP~~~~~~~~G~~l~~~~~ 204 (422)
+ +++|++.+++.++.+ +.|+++||+ +.++++|.++|++++++| +|+||||++|||.. ..|..+.++++
T Consensus 75 g------~~~~~~~~~~~~~~~-~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~---~gg~~~~~~~~ 143 (301)
T PRK07259 75 G------VDAFIEEELPWLEEF-DTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK---HGGMAFGTDPE 143 (301)
T ss_pred C------HHHHHHHHHHHHhcc-CCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC---CCccccccCHH
Confidence 7 899999888776655 789999997 678999999999999998 99999999999963 22567889999
Q ss_pred HHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 205 LLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 205 ~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
.+.+++++||+.+++||+||+++++++..++++.+.++|+|+|+++||+.+ +.+|+++.+|... ...||+||+++
T Consensus 144 ~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g-~~~~~~~~~~~~~----~~~gg~sg~~~ 218 (301)
T PRK07259 144 LAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKG-MAIDIKTRKPILA----NVTGGLSGPAI 218 (301)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccc-cccccccCceeec----CCcCccCCcCc
Confidence 999999999999999999999999888899999999999999999999865 4566666554322 24688999999
Q ss_pred chhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCC
Q 014581 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFS 364 (422)
Q Consensus 285 ~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~ 364 (422)
+|.++++++++++.+ ++|||++|||.+++|+.+++++|||+||+||+++. +|++++++++++++||+++||+
T Consensus 219 ~p~~l~~v~~i~~~~-------~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 219 KPIALRMVYQVYQAV-------DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-DPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred ccccHHHHHHHHHhC-------CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-CcHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999876 79999999999999999999999999999999999 6999999999999999999999
Q ss_pred CHHHhhcCCcc
Q 014581 365 SIEDFRGASIE 375 (422)
Q Consensus 365 si~d~~G~~~~ 375 (422)
+++|++|.+++
T Consensus 291 ~i~~~~g~~~~ 301 (301)
T PRK07259 291 SIEEIVGIAHK 301 (301)
T ss_pred CHHHHhCcccC
Confidence 99999997753
No 9
>PLN02826 dihydroorotate dehydrogenase
Probab=100.00 E-value=5.7e-56 Score=448.69 Aligned_cols=320 Identities=23% Similarity=0.288 Sum_probs=270.1
Q ss_pred CCCceeeEeeecccC-----CCCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCC
Q 014581 26 RLPSRIGLRVLASDS-----ASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINV 100 (422)
Q Consensus 26 ~~~~~~~~~~~~~~~-----~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~ 100 (422)
+..|+...+.++..+ ..++++|+++++|++|+|||++|||++ ++++.+..+.++|||+|++||||.++ |.||+
T Consensus 48 E~aH~~~~~~l~~~~~~~~~~~~~~~L~~~~~Gl~f~NPvglAAG~d-kn~~~~~~l~~lGfG~vevgTVT~~p-q~GNp 125 (409)
T PLN02826 48 ETAHSLAISAAARGLVPREKRPDPSVLGVEVWGRTFSNPIGLAAGFD-KNAEAVEGLLGLGFGFVEIGSVTPLP-QPGNP 125 (409)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCCcceEECCEECCCCCEECcccC-CCHHHHHHHHhcCCCeEEeCCccCCC-CCCCC
Confidence 556666666654211 245678999999999999999999999 89999999999999999999999988 89999
Q ss_pred CCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHHHHHHhhC---------------------CCCeEEEEeCCC
Q 014581 101 TPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALY---------------------PDKILIASIMEE 159 (422)
Q Consensus 101 ~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~---------------------~~~pvi~si~~~ 159 (422)
.||+++++++. +..|++||+|.| ++.+.+++++.++.. ...|+++||+..
T Consensus 126 ~PR~frl~~~~---aiiN~~Gfnn~G------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~n 196 (409)
T PLN02826 126 KPRVFRLREEG---AIINRYGFNSEG------IVAVAKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKN 196 (409)
T ss_pred CCcEEecCCCc---eeEecCCCCCcC------HHHHHHHHHHHhhhcccccccccccccccccccccccCceEEEEeccC
Confidence 99999998654 679999999998 788888887654210 123899999632
Q ss_pred C----CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc---------cCccEEEEEC
Q 014581 160 Y----NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK---------ATVPVWAKMT 226 (422)
Q Consensus 160 ~----~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~---------~~iPv~vKl~ 226 (422)
. ..++|.+.++++.+ .+|+||||+||||+...+ ..++++.+.+++++|++. .++||+||++
T Consensus 197 k~~~~~~~Dy~~~~~~~~~-~aDylelNiScPNtpglr-----~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKla 270 (409)
T PLN02826 197 KTSEDAAADYVQGVRALSQ-YADYLVINVSSPNTPGLR-----KLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIA 270 (409)
T ss_pred CCCcccHHHHHHHHHHHhh-hCCEEEEECCCCCCCCcc-----cccChHHHHHHHHHHHHHHHHhhhccccCCceEEecC
Confidence 1 46788888888876 599999999999985433 247888999999988743 4689999999
Q ss_pred CCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCC
Q 014581 227 PNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFN 304 (422)
Q Consensus 227 ~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~ 304 (422)
|+++ ++.++++.+.++|+|||+++||+.+++. |+++.. . ....||+||++++|.++++|+++++.+.+
T Consensus 271 Pdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~-dl~~~~-~-----~~~~GGlSG~pl~~~sl~~v~~l~~~~~~--- 340 (409)
T PLN02826 271 PDLSKEDLEDIAAVALALGIDGLIISNTTISRPD-SVLGHP-H-----ADEAGGLSGKPLFDLSTEVLREMYRLTRG--- 340 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCcc-chhccc-c-----cccCCCcCCccccHHHHHHHHHHHHHhCC---
Confidence 9987 5889999999999999999999876432 443321 1 12479999999999999999999998853
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCCCHHHhhcCCc
Q 014581 305 DKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGASI 374 (422)
Q Consensus 305 ~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~si~d~~G~~~ 374 (422)
++|||++|||.|++|+.++|++||++||+||+++++||.++++|+++|.+||+++||++++|++|.++
T Consensus 341 --~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~~G~~si~e~iG~~~ 408 (409)
T PLN02826 341 --KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELAACLERDGFKSIQEAVGADH 408 (409)
T ss_pred --CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999765
No 10
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=5.6e-55 Score=435.38 Aligned_cols=320 Identities=24% Similarity=0.330 Sum_probs=272.2
Q ss_pred CCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCC-----CCCCCcccc
Q 014581 45 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAG-----ANGSAKGQI 119 (422)
Q Consensus 45 ~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~-----~~~~a~~~~ 119 (422)
+||+|+|+|++|+|||++|||+.+++.+.++++.++||||||+||+|.++ .+++.|++++.... ....+..|+
T Consensus 1 ~~l~~~~~Gl~l~nPv~~asg~~~~~~~~~~~~~~~g~Gavv~kti~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 78 (334)
T PRK07565 1 MDLSTTYLGLTLRNPLVASASPLSESVDNVKRLEDAGAGAVVLKSLFEEQ--IRHEAAELDRHLTHGTESFAEALDYFPE 78 (334)
T ss_pred CCceEEECCEecCCCCEecCcCCCCCHHHHHHHHHCCCeEEEEeeCCHHH--hhccccccccccccCCCcchhhhhhhhh
Confidence 47999999999999999999999999999999999999999999999643 44544554331000 000135778
Q ss_pred cccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccc
Q 014581 120 IGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAV 199 (422)
Q Consensus 120 ~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l 199 (422)
+||+|++ .|+|++.++++++.. +.|+++||+ +.+.++|.++++.++++|+|+||||++||+..... .|.
T Consensus 79 ~gl~n~g------~d~~~~~i~~~~~~~-~~pvi~sI~-g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~-~g~-- 147 (334)
T PRK07565 79 PAKFYVG------PEEYLELIRRAKEAV-DIPVIASLN-GSSAGGWVDYARQIEQAGADALELNIYYLPTDPDI-SGA-- 147 (334)
T ss_pred hhccCcC------HHHHHHHHHHHHHhc-CCcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCC-ccc--
Confidence 8888887 899999999887765 789999997 67899999999999999999999999998864321 122
Q ss_pred ccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 200 GQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 200 ~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
...+.+.++++++++.+++||+||++|+++++.++++.++++|+|+|+++||+.+ +.+|.++.++.+ .+|+
T Consensus 148 -~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~-~~~d~~~~~~~~-------~~gl 218 (334)
T PRK07565 148 -EVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQ-PDIDLETLEVVP-------GLVL 218 (334)
T ss_pred -cHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCC-CCcChhhccccc-------CCCC
Confidence 2335688999999999999999999999888899999999999999999999865 567777665543 3679
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHH
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMK 359 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~ 359 (422)
||++++|.++++|+++++.+ ++|||++|||+|++|+.++|++||++||+||+++++||.++++|+++|++||+
T Consensus 219 sg~~~~~~al~~v~~~~~~~-------~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 219 STPAELRLPLRWIAILSGRV-------GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWME 291 (334)
T ss_pred CCchhhhHHHHHHHHHHhhc-------CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999998876 79999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCHHHhhcCC-cccCCChhHHHHHhHH-HHhH
Q 014581 360 MHNFSSIEDFRGAS-IEYFTTHTELVRMQQE-AIQQ 393 (422)
Q Consensus 360 ~~G~~si~d~~G~~-~~~~~~~~~~~~~~~~-~~~~ 393 (422)
++||++++|++|.. +.+..+.+++.|.||+ ...+
T Consensus 292 ~~g~~~i~e~~g~~~~~~~~~~~~~~~~~~~~~~~~ 327 (334)
T PRK07565 292 RHGYESLQQFRGSMSQKNVPDPAAFERAQYMKALSS 327 (334)
T ss_pred HcCCCCHHHHhcccccccCCChhhhHHHHHHHHHHh
Confidence 99999999999975 5778888999999999 4443
No 11
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=7.6e-55 Score=426.75 Aligned_cols=285 Identities=24% Similarity=0.294 Sum_probs=249.4
Q ss_pred eEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccccccccc
Q 014581 49 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELI 128 (422)
Q Consensus 49 ~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~ 128 (422)
++|+|++|+|||++|||+++++.+.+++++++||||||+||+|.++ +.+|+.||+++...+ ..|++||+|.+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~~G~Gavv~ktit~~~-~~gn~~pr~~~~~~~-----~~N~~G~~n~g-- 72 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLAG-RPGNPEPRYYAFPLG-----SINSLGLPNLG-- 72 (294)
T ss_pred CccCCeeCCCCCEECCCCCCCCHHHHHHHHHcCCcEEEeCcccCCC-CCCCCCCcEEecCcc-----ccccccCCCcC--
Confidence 5789999999999999998899999999999999999999999987 789999999987543 48999999988
Q ss_pred CCChHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCHHHHHHHHHHHHHh---CCCEEEEccCCCCCCCccccccccccCh
Q 014581 129 SDRPLETMLKEFKQLKALY--PDKILIASIMEEYNKAAWEELIDRVEET---GIDAIEVNFSCPHGMPERKMGAAVGQDC 203 (422)
Q Consensus 129 s~~~~e~~l~~i~~~k~~~--~~~pvi~si~~~~~~~~~~~~a~~~~~a---GaD~iElN~scP~~~~~~~~G~~l~~~~ 203 (422)
+++|++++++.++.+ .+.|+++||+ +. +++|.++++++++. |+|+||||+||||+... ..+.+++
T Consensus 73 ----~~~~~~~i~~~~~~~~~~~~pvivsi~-g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----~~~~~~~ 142 (294)
T cd04741 73 ----LDYYLEYIRTISDGLPGSAKPFFISVT-GS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----PPPAYDF 142 (294)
T ss_pred ----HHHHHHHHHHHhhhccccCCeEEEECC-CC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc----ccccCCH
Confidence 899999998876643 3789999997 55 99999999999875 69999999999997322 2456799
Q ss_pred hHHHHHHHHHhhccCccEEEEECCCCC--ChHHHHHHHHHc--CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 204 RLLEEVCGWINAKATVPVWAKMTPNIT--DITEPARVALRS--GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 204 ~~v~~iv~~vr~~~~iPv~vKl~~~~~--~~~~~a~~l~~a--Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
+.+.++++++++.+++||+|||+|+++ ++.++++.+.++ |+|+|+++||+...+.||+++.++... ....+||+
T Consensus 143 ~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~--~~~~~gG~ 220 (294)
T cd04741 143 DATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLK--PKTGFGGL 220 (294)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccC--CCCCCCCc
Confidence 999999999999999999999999874 356777778788 999999999997666788777665432 12357999
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHH
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFM 358 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m 358 (422)
||++++|.++++|+++++.+++ ++|||++|||.|++|+++++++|||+||+||+++++||+++++|+++|++||
T Consensus 221 SG~~i~~~al~~v~~~~~~~~~-----~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~~ 294 (294)
T cd04741 221 AGAYLHPLALGNVRTFRRLLPS-----EIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELEDIW 294 (294)
T ss_pred CchhhHHHHHHHHHHHHHhcCC-----CCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHHHhhC
Confidence 9999999999999999998742 5999999999999999999999999999999999988999999999999986
No 12
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=1.1e-53 Score=419.81 Aligned_cols=295 Identities=34% Similarity=0.524 Sum_probs=265.2
Q ss_pred ceEeCCeecCCCceecCCCCCCCHHHHHHHHHcC-CcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccccccc
Q 014581 48 SITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEG-WGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIE 126 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G-~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~ 126 (422)
+|+|+|++|+|||++|||+++ +.+.++++++.| ||++|+||++.++ +.+|+.||+++.+. +..|++|++|.+
T Consensus 1 ~~~~~G~~~~nP~~~aag~~~-~~~~~~~~~~~g~~g~v~~~ti~~~~-~~~~~~p~~~~~~~-----~~~n~~g~~~~g 73 (296)
T cd04740 1 SVELAGLRLKNPVILASGTFG-FGEELSRVADLGKLGAIVTKSITLEP-REGNPPPRVVETPG-----GMLNAIGLQNPG 73 (296)
T ss_pred CeEECCEEcCCCCEECCCCCC-CHHHHHHHHhcCCceEEEECCcCCCC-CCCCCCCeEEecCc-----ceeeecCCCCcC
Confidence 589999999999999999996 888899999987 9999999999987 67999999988764 458889999888
Q ss_pred ccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHH
Q 014581 127 LISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 206 (422)
Q Consensus 127 ~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v 206 (422)
++.|++.+++.++. .+.|+++||+ +.++++|.++|++++++|+|+||||++||++. ..|.+++++++.+
T Consensus 74 ------~~~~~~~~~~~~~~-~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~---~~g~~~~~~~~~~ 142 (296)
T cd04740 74 ------VEAFLEELLPWLRE-FGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVK---GGGMAFGTDPEAV 142 (296)
T ss_pred ------HHHHHHHHHHHhhc-CCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC---CCcccccCCHHHH
Confidence 89999999887664 3789999997 67899999999999999999999999999973 2267788999999
Q ss_pred HHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 207 EEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
.++++++|+.+++||++|++++.++..++++.+.++|+|+|+++||+.+ +.+|.++.+|... ...||+||++++|
T Consensus 143 ~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g-~~~~~~~~~~~~~----~~~gg~sg~~~~~ 217 (296)
T cd04740 143 AEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKG-MAIDIETRKPILG----NVTGGLSGPAIKP 217 (296)
T ss_pred HHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcc-cccccccCceeec----CCcceecCcccch
Confidence 9999999999999999999999888899999999999999999999875 4667766655432 2358899999999
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCCCH
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSI 366 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~si 366 (422)
.++++++++++.+ ++|||++|||.+++|+.+++++|||+||+||+++. +|++++++.++|.+||+++||+|+
T Consensus 218 ~~~~~i~~i~~~~-------~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-~p~~~~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 218 IALRMVYQVYKAV-------EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-DPEAFKEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred HHHHHHHHHHHhc-------CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-ChHHHHHHHHHHHHHHHHcCCCCH
Confidence 9999999999876 79999999999999999999999999999999999 699999999999999999999999
Q ss_pred HHhhcCC
Q 014581 367 EDFRGAS 373 (422)
Q Consensus 367 ~d~~G~~ 373 (422)
+|++|.+
T Consensus 290 ~~~~g~~ 296 (296)
T cd04740 290 EELVGLA 296 (296)
T ss_pred HHHhCcC
Confidence 9999963
No 13
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=100.00 E-value=5.2e-55 Score=428.88 Aligned_cols=287 Identities=37% Similarity=0.576 Sum_probs=236.9
Q ss_pred CcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccc
Q 014581 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENI 125 (422)
Q Consensus 46 dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~ 125 (422)
.|+|+|+|++|+|||++|||++ ++.+.++++.++||||+|+||+|.++ +.+|+.||+++.+.+. +..|++||+|.
T Consensus 1 ~L~~~~~Gl~l~nPi~~asG~~-~~~~~~~~~~~~G~Gavv~ksvt~~~-~~gn~~pr~~~~~~~~---~~~n~~G~~n~ 75 (295)
T PF01180_consen 1 MLSTNFCGLTLKNPIGLASGLD-KNGEEIKRLFDAGFGAVVTKSVTPEP-REGNPEPRIFRLPEGE---SILNSMGLPNP 75 (295)
T ss_dssp GG-EEETTEEESSSEEE-TTSS-TSSHHHHHHHHHSSSEEEEEEE-SSG-B--SSSS-EEEETTET---EEEE---S-BS
T ss_pred CccEEECCEEcCCCcEECCcCC-CCchhhhhhhcCCccEEEeccccccc-cccccCCcEEeecccc---ccccccCCChH
Confidence 3899999999999999999987 67888999999999999999999987 7899999999887753 46889999998
Q ss_pred cccCCChHHHHHHHHHHHHhhCC---CCeEEEEeCCCCC---HHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccc
Q 014581 126 ELISDRPLETMLKEFKQLKALYP---DKILIASIMEEYN---KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAV 199 (422)
Q Consensus 126 ~~~s~~~~e~~l~~i~~~k~~~~---~~pvi~si~~~~~---~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l 199 (422)
+ .+.|++++++.++... +.||++|+. +.+ .++|.+++++++ +|+|+||||+||||+. .+..+
T Consensus 76 g------~~~~~~~~~~~~~~~~~~~~~pvi~Si~-~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~----~~~~~ 143 (295)
T PF01180_consen 76 G------LEYYLERLRPILKEAKKDVDIPVIASIN-GDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP----GGRPF 143 (295)
T ss_dssp H------HHHHHHHHHHTHHHTTCH-CEEEEEEE--TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST----TSGGG
T ss_pred H------HHHHHHHHHHHhhhcccccceeEEEEee-cCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC----Ccccc
Confidence 8 8999998887776542 579999997 566 899999999998 7899999999999984 23456
Q ss_pred ccChhHHHHHHHHHhhccCccEEEEECCCCCChH--HHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 200 GQDCRLLEEVCGWINAKATVPVWAKMTPNITDIT--EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 200 ~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~--~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
.++++...++++++++.+++||+|||+|++++.. ..+..+.+.|+++|+++||+...+.+|+++.++... ...|
T Consensus 144 ~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~----~~~g 219 (295)
T PF01180_consen 144 GQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLG----NGFG 219 (295)
T ss_dssp GGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSS----GGEE
T ss_pred ccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeec----cccC
Confidence 6788999999999999999999999999988854 455566688999999999998766689998777543 2478
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHH
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDF 357 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~ 357 (422)
|+||++++|+++++|+++++.+++ ++||||+|||+|++|++++|++||++||+||+++++||.++++|+++|++|
T Consensus 220 GlSG~~i~p~aL~~V~~~~~~~~~-----~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~~~ 294 (295)
T PF01180_consen 220 GLSGPAIRPIALRWVRELRKALGQ-----DIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELEEW 294 (295)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHTTT-----SSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHHHH
T ss_pred CcCchhhhhHHHHHHHHHHhcccc-----ceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHHhh
Confidence 999999999999999999999853 699999999999999999999999999999999999999999999999999
Q ss_pred H
Q 014581 358 M 358 (422)
Q Consensus 358 m 358 (422)
|
T Consensus 295 l 295 (295)
T PF01180_consen 295 L 295 (295)
T ss_dssp H
T ss_pred C
Confidence 8
No 14
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=3.5e-53 Score=416.90 Aligned_cols=298 Identities=36% Similarity=0.563 Sum_probs=265.7
Q ss_pred cceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccccccc
Q 014581 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIE 126 (422)
Q Consensus 47 L~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~ 126 (422)
|+|+|+|++|+|||++|||+.+++.+.++.+.+.|+|++++||++.++ +.+|+.||+++.+.. ..|++|++|.+
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~-~~gn~~pr~~~~~~~-----~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEP-RPGYRNPTIVETPCG-----MLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCCCHHHHHHHHHcCCcEEEeCcccccc-ccCCCCCeEEecccH-----HhhhccCCCcC
Confidence 689999999999999999988889999999999999999999999988 689999999887654 48888998877
Q ss_pred ccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh--CCCEEEEccCCCCCCCccccccccccChh
Q 014581 127 LISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET--GIDAIEVNFSCPHGMPERKMGAAVGQDCR 204 (422)
Q Consensus 127 ~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a--GaD~iElN~scP~~~~~~~~G~~l~~~~~ 204 (422)
.+.|++.++..++.+ +.|+++||. +.++++|.++++.++++ ++|+||||++||+.. ++|.+++++++
T Consensus 75 ------~~~~~~~~~~~~~~~-~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~---~~g~~l~~~~~ 143 (300)
T TIGR01037 75 ------VEAFLEELKPVREEF-PTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK---GGGIAIGQDPE 143 (300)
T ss_pred ------HHHHHHHHHHHhccC-CCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC---CCccccccCHH
Confidence 899999888766544 679999997 68899999999999876 399999999999973 46788999999
Q ss_pred HHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 205 LLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 205 ~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
.+.++++++|+.+++||+||++++.++..++++.+.++|+|+|+++||+.+ ..+|..+.+|... ...||++|+++
T Consensus 144 ~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~-~~~~~~~~~~~~~----~~~gg~sg~~~ 218 (300)
T TIGR01037 144 LSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRG-MKIDIKTGKPILA----NKTGGLSGPAI 218 (300)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCc-cccccccCceeeC----CCCccccchhh
Confidence 999999999999899999999998888899999999999999999999865 3556555444321 23588999999
Q ss_pred chhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCC
Q 014581 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFS 364 (422)
Q Consensus 285 ~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~ 364 (422)
+|.+++.++++++.+ ++|||++|||.+++|+.+++++|||+||+||+++.+ |++++++.++|++||+++||+
T Consensus 219 ~~~~l~~v~~i~~~~-------~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~-p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 219 KPIALRMVYDVYKMV-------DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR-GFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred hHHHHHHHHHHHhcC-------CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC-chHHHHHHHHHHHHHHHcCCC
Confidence 999999999998876 799999999999999999999999999999999999 699999999999999999999
Q ss_pred CHHHhhcCCc
Q 014581 365 SIEDFRGASI 374 (422)
Q Consensus 365 si~d~~G~~~ 374 (422)
|++|++|.++
T Consensus 291 ~~~e~~g~~~ 300 (300)
T TIGR01037 291 SIEELIGIAH 300 (300)
T ss_pred CHHHHhCcCC
Confidence 9999999764
No 15
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=1.6e-51 Score=411.42 Aligned_cols=290 Identities=26% Similarity=0.351 Sum_probs=249.7
Q ss_pred CCCCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccc
Q 014581 40 SASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQI 119 (422)
Q Consensus 40 ~~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~ 119 (422)
+.+++++|+|+|+|++|+|||++|||++ ++++.++.+.++|||+||+||+|.++ +.+|+.||+++++++. +..|+
T Consensus 42 ~~~~~~~L~~~~~Gl~l~nPi~~AsG~~-~~~~~~~~~~~~G~Gavv~ktvt~~p-~~gn~~pr~~~~~~~~---~~~N~ 116 (344)
T PRK05286 42 LTYTDPRLPVTVMGLTFPNPVGLAAGFD-KNGEAIDALGALGFGFVEVGTVTPRP-QPGNPKPRLFRLPEDE---ALINR 116 (344)
T ss_pred cCCCCCCCceEECCEECCCCCEECCCCC-CChHHHHHHHHcCCCEEEeCCcCCCC-CCCCCCCCEEeccccc---ccccC
Confidence 3467889999999999999999999988 78999999999999999999999976 7999999998876532 56899
Q ss_pred cccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCC------CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcc
Q 014581 120 IGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEE------YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPER 193 (422)
Q Consensus 120 ~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~------~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~ 193 (422)
+||+|.| ++.|++++++.+ .+.|+|+||++. .+.++|.++++++++ ++|+||+|+||||+...+
T Consensus 117 ~gl~n~g------~~~~~~~l~~~~---~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~ 186 (344)
T PRK05286 117 MGFNNDG------ADALAERLKKAY---RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLR 186 (344)
T ss_pred CCCCCHh------HHHHHHHHHHhc---CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcc
Confidence 9999988 899999988765 378999999742 146788888888866 699999999999975322
Q ss_pred ccccccccChhHHHHHHHHHhhccC-----ccEEEEECCCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCC
Q 014581 194 KMGAAVGQDCRLLEEVCGWINAKAT-----VPVWAKMTPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRP 266 (422)
Q Consensus 194 ~~G~~l~~~~~~v~~iv~~vr~~~~-----iPv~vKl~~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p 266 (422)
..++++.+.+++++||+.++ +||+||++++++ ++.++++++.++|+|+|+++||+.... ++.+..
T Consensus 187 -----~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~--~~~~~~- 258 (344)
T PRK05286 187 -----DLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRD--GLKGLP- 258 (344)
T ss_pred -----cccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccc--cccccc-
Confidence 26889999999999999886 999999999987 478999999999999999999985421 222111
Q ss_pred CCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHH
Q 014581 267 EPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346 (422)
Q Consensus 267 ~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~ 346 (422)
. ....||+||++++|.++++++++++.+.+ ++|||++|||.+++|+.+++++|||+||+||+++.+||++
T Consensus 259 -~----~~~~gg~SG~~~~~~~l~~v~~l~~~~~~-----~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~ 328 (344)
T PRK05286 259 -N----ADEAGGLSGRPLFERSTEVIRRLYKELGG-----RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGL 328 (344)
T ss_pred -c----CCCCCCcccHHHHHHHHHHHHHHHHHhCC-----CCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchH
Confidence 0 12468999999999999999999998743 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q 014581 347 VKRLCEELKDFMKMHN 362 (422)
Q Consensus 347 i~~i~~~l~~~m~~~G 362 (422)
+++|+++|++||+++|
T Consensus 329 ~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 329 VKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999987
No 16
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=100.00 E-value=5.2e-51 Score=405.43 Aligned_cols=275 Identities=24% Similarity=0.347 Sum_probs=235.7
Q ss_pred cceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccccccc
Q 014581 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIE 126 (422)
Q Consensus 47 L~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~ 126 (422)
|+++|+|++|+|||++|||++ ++++.++.+.++|||+||+||+|.++ |.+|+.||+++++++. +..|++||+|.|
T Consensus 46 L~~~~~Gl~l~NPi~lAsG~~-~~~~~~~~~~~~G~Gavv~kTvt~~p-~~gn~~Pr~~~~~~~~---~~iN~~Gl~n~G 120 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAAGFD-KDGEAIDALGAMGFGFLEIGTVTPKP-QPGNPRPRLFRLIEDE---ALINRMGFNNHG 120 (335)
T ss_pred CcEEECCEECCCCcEeCCccC-CCHHHHHHHHhcCCCEEEeCCcCCCC-CCCCCCCCEEECcccc---ccccCCCCCChh
Confidence 999999999999999999987 89999999999999999999999986 8999999998877533 568999999988
Q ss_pred ccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCC------CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccc
Q 014581 127 LISDRPLETMLKEFKQLKALYPDKILIASIMEEY------NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVG 200 (422)
Q Consensus 127 ~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~------~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~ 200 (422)
+++|++++++.+ .+.|+++||+... +.++|.++++++.+ .+|+||||+||||+.. ....
T Consensus 121 ------~~~~l~~i~~~~---~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~-----~~~~ 185 (335)
T TIGR01036 121 ------ADVLVERLKRAR---YKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPG-----LRDL 185 (335)
T ss_pred ------HHHHHHHHhhcc---CCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCC-----cccc
Confidence 899999887632 2689999996321 45777777777766 4999999999999742 3345
Q ss_pred cChhHHHHHHHHHhhccC-------ccEEEEECCCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCC
Q 014581 201 QDCRLLEEVCGWINAKAT-------VPVWAKMTPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVE 271 (422)
Q Consensus 201 ~~~~~v~~iv~~vr~~~~-------iPv~vKl~~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~ 271 (422)
++++.+.+++++|++.++ +||+|||+|+++ ++.++++++.++|+|||+++||+.+. .+ +++ +..
T Consensus 186 ~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~-~~-~~~--~~~--- 258 (335)
T TIGR01036 186 QYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSR-SL-VQG--PKN--- 258 (335)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCcc-cc-ccC--ccc---
Confidence 889999999999998876 999999999987 58999999999999999999998652 22 211 111
Q ss_pred CCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 272 GYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 272 ~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
....||+||++++|.++++|+++++.+.+ ++|||++|||.+++|+.+++++||++||+||+++.+||.++++|+
T Consensus 259 -~~~~GGlSG~~i~p~al~~v~~~~~~~~~-----~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 259 -SDETGGLSGKPLQDKSTEIIRRLYAELQG-----RLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred -cCCCCcccCHHHHHHHHHHHHHHHHHhCC-----CCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHH
Confidence 02479999999999999999999998753 699999999999999999999999999999999999999999998
Q ss_pred HHH
Q 014581 352 EEL 354 (422)
Q Consensus 352 ~~l 354 (422)
++|
T Consensus 333 ~~L 335 (335)
T TIGR01036 333 KEI 335 (335)
T ss_pred hhC
Confidence 874
No 17
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=100.00 E-value=1.1e-48 Score=388.69 Aligned_cols=281 Identities=27% Similarity=0.361 Sum_probs=239.5
Q ss_pred CCCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccc
Q 014581 41 ASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQII 120 (422)
Q Consensus 41 ~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~ 120 (422)
.+++++|+|+|+|++|+|||++|||++ ++.+.++.+.++||||+|+||+|.++ +.+|+.||++++++.. +..|++
T Consensus 33 ~~~~~~L~~~~~Gl~l~nPi~~AsG~~-~~~~~~~~~~~~G~Gavv~ktit~~~-~~gn~~pr~~~~~~~~---~~~n~~ 107 (327)
T cd04738 33 VYDDPRLEVEVFGLTFPNPVGLAAGFD-KNAEAIDALLALGFGFVEVGTVTPRP-QPGNPKPRLFRLPEDE---ALINRM 107 (327)
T ss_pred CCCCCCcceEECCEECCCCCEeCcCCC-CCHHHHHHHHHCCCcEEEEeccCCCC-CCCCCCCCEEEccCcc---ceeecC
Confidence 378889999999999999999999987 78999999999999999999999986 7899999998876532 468999
Q ss_pred ccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCC-------HHHHHHHHHHHHHhCCCEEEEccCCCCCCCcc
Q 014581 121 GWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYN-------KAAWEELIDRVEETGIDAIEVNFSCPHGMPER 193 (422)
Q Consensus 121 Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~-------~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~ 193 (422)
||+|.| ++.|++.+++.+. .+.|+++||. +.+ .++|.++++++.+ ++|+||+|+||||...
T Consensus 108 g~~n~g------~~~~~~~l~~~~~--~~~plivsi~-g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g-- 175 (327)
T cd04738 108 GFNNDG------ADAVAKRLKKRRP--RGGPLGVNIG-KNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPG-- 175 (327)
T ss_pred CCCCcc------HHHHHHHHHHhcc--CCCeEEEEEe-CCCCCcccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCc--
Confidence 999998 8999998887654 3789999997 333 4677777777765 4999999999999742
Q ss_pred ccccccccChhHHHHHHHHHhhccC-----ccEEEEECCCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCC
Q 014581 194 KMGAAVGQDCRLLEEVCGWINAKAT-----VPVWAKMTPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRP 266 (422)
Q Consensus 194 ~~G~~l~~~~~~v~~iv~~vr~~~~-----iPv~vKl~~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p 266 (422)
....++++.+.++++++|+.++ +||+||++++++ ++.++++.+.++|+|+|+++||+.+.. .+ .++
T Consensus 176 ---~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~-~~---~~~ 248 (327)
T cd04738 176 ---LRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRP-GL---LRS 248 (327)
T ss_pred ---cccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCccccc-cc---ccc
Confidence 2236899999999999999875 999999999887 688999999999999999999986521 11 111
Q ss_pred CCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHH
Q 014581 267 EPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346 (422)
Q Consensus 267 ~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~ 346 (422)
.. ....||+||++++|.++++|+++++.+.. ++|||++|||.|++|+.+++++|||+||+||+++.+||++
T Consensus 249 ~~----~~~~gG~sG~~~~~~~l~~v~~l~~~~~~-----~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~ 319 (327)
T cd04738 249 PL----ANETGGLSGAPLKERSTEVLRELYKLTGG-----KIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGL 319 (327)
T ss_pred cc----cCCCCccCChhhhHHHHHHHHHHHHHhCC-----CCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHH
Confidence 11 12468999999999999999999998743 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 014581 347 VKRLCEEL 354 (422)
Q Consensus 347 i~~i~~~l 354 (422)
+++|+++|
T Consensus 320 ~~~i~~~l 327 (327)
T cd04738 320 VKRIKREL 327 (327)
T ss_pred HHHHHhcC
Confidence 99998874
No 18
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-49 Score=372.72 Aligned_cols=328 Identities=23% Similarity=0.351 Sum_probs=263.7
Q ss_pred ccccccCCCCCCCceeeEeeec-----ccCCCCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEeccc
Q 014581 16 SFAVNRRPGLRLPSRIGLRVLA-----SDSASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTV 90 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv 90 (422)
||-....| +..||++++... .+--.++..|.++|.|.+|+|||++|||++ ++++.+..++++|||++++||+
T Consensus 50 ~~~~lld~--E~sHrlAv~aas~gl~Pr~~~~d~~~L~~k~~g~~f~NPiglAAGfd-k~~eaidgL~~~gfG~ieigSv 126 (398)
T KOG1436|consen 50 PFHALLDP--EFSHRLAVLAASWGLLPRDRVADDASLETKVLGRKFSNPIGLAAGFD-KNAEAIDGLANSGFGFIEIGSV 126 (398)
T ss_pred hhhhhCCH--HHHHHHHHHHHHhCCCchhccCCccchhhHHhhhhccCchhhhhccC-cchHHHHHHHhCCCceEEeccc
Confidence 44444444 667888888733 222356678999999999999999999999 9999999999999999999999
Q ss_pred ccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHHHHHH-hhCCCC--eEEEEeCCC-CCHHHHH
Q 014581 91 SLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLK-ALYPDK--ILIASIMEE-YNKAAWE 166 (422)
Q Consensus 91 ~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k-~~~~~~--pvi~si~~~-~~~~~~~ 166 (422)
|..| |+|||+||+++++++. +..|++||+|.| .+.+++.++.-+ ..+|+. ++.++++.. .+.++..
T Consensus 127 Tp~p-qeGNPkPRvfrl~ed~---~vINryGfns~G------i~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~ 196 (398)
T KOG1436|consen 127 TPKP-QEGNPKPRVFRLPEDL---AVINRYGFNSEG------IDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAIL 196 (398)
T ss_pred ccCC-CCCCCCCceEeccccc---chhhccCCCccc------HHHHHHHHHHHHHhcCCCccccceeeeccccCCcchHH
Confidence 9987 8999999999999866 679999999988 789988885522 224543 467888632 2556666
Q ss_pred HHHHHHHHhC--CCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc-------cCccEEEEECCCCC--ChHHH
Q 014581 167 ELIDRVEETG--IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK-------ATVPVWAKMTPNIT--DITEP 235 (422)
Q Consensus 167 ~~a~~~~~aG--aD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~-------~~iPv~vKl~~~~~--~~~~~ 235 (422)
++++.+...| +|+++||+||||+...|.+ |....+++.+..+..+ .+.|+++|+.|++. +..++
T Consensus 197 dy~~gV~~~g~~adylviNvSsPNtpGlr~l-----q~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~di 271 (398)
T KOG1436|consen 197 DYVEGVRVFGPFADYLVINVSSPNTPGLRSL-----QKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDI 271 (398)
T ss_pred HHHHHhhhcccccceEEEeccCCCCcchhhh-----hhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHH
Confidence 6777776543 9999999999999766642 3333344444443222 25599999999976 36788
Q ss_pred HHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecC
Q 014581 236 ARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGG 315 (422)
Q Consensus 236 a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GG 315 (422)
+..+++.++|++++.||+-+++. +....++ ....||+||++++|+++++|+++++.+.+ +||||++||
T Consensus 272 a~v~kk~~idg~IvsnttVsrp~-~~~~~~~------~~etGGLsG~plk~~st~~vR~mY~lt~g-----~IpiIG~GG 339 (398)
T KOG1436|consen 272 ALVVKKLNIDGLIVSNTTVSRPK-ASLVNKL------KEETGGLSGPPLKPISTNTVRAMYTLTRG-----KIPIIGCGG 339 (398)
T ss_pred HHHHHHhCccceeecCceeecCc-ccccccc------ccccCCCCCCccchhHHHHHHHHHHhccC-----CCceEeecC
Confidence 88889999999999999866421 1111111 24679999999999999999999999865 899999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCCCHHHhhcCC
Q 014581 316 VETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGAS 373 (422)
Q Consensus 316 I~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~si~d~~G~~ 373 (422)
|.|++||.|.+.|||+.||++|++.+.||.++++|+++|...|+++||.+++|++|+.
T Consensus 340 V~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398)
T KOG1436|consen 340 VSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398)
T ss_pred ccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCCCcHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999999974
No 19
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=100.00 E-value=1.7e-47 Score=374.56 Aligned_cols=283 Identities=34% Similarity=0.557 Sum_probs=242.2
Q ss_pred eEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCC----CCCCccccccccc
Q 014581 49 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGA----NGSAKGQIIGWEN 124 (422)
Q Consensus 49 ~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~----~~~a~~~~~Gl~n 124 (422)
|+|+|++|+|||++|||+++++.+.++.+.++|||++|+||++.++ +.+|+.||+++++... ...+..|++|++|
T Consensus 1 ~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~-~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~ 79 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHP-RPGNPLPRVARLPPEGESYPEQLGILNSFGLPN 79 (289)
T ss_pred CeECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCC-CCCCCCCCEEEeccccccCcccceEeecCCCCC
Confidence 5799999999999999999999999999999999999999999986 7899999999876311 0124678888887
Q ss_pred ccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChh
Q 014581 125 IELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCR 204 (422)
Q Consensus 125 ~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~ 204 (422)
.+ .++|++++++.++.+++.|+++||+ +.++++|.+++++++++|+|+||||++||+... +..+.++++
T Consensus 80 ~g------~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~----~~~~~~~~~ 148 (289)
T cd02810 80 LG------LDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGG----GRQLGQDPE 148 (289)
T ss_pred cC------HHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC----CcccccCHH
Confidence 76 8999999988776535899999997 678999999999999999999999999999743 234678999
Q ss_pred HHHHHHHHHhhccCccEEEEECCCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 205 LLEEVCGWINAKATVPVWAKMTPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 205 ~v~~iv~~vr~~~~iPv~vKl~~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
.+.++++++|+.+++||++|++++.+ +..++++.+.++|+|+|+++|++.+. .++..+..+.. ....+|++|+
T Consensus 149 ~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~-~~~~~~~~~~~----~~~~~g~sg~ 223 (289)
T cd02810 149 AVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGR-VVDLKTVGPGP----KRGTGGLSGA 223 (289)
T ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcc-ceecccCcccc----CCCCCccCcH
Confidence 99999999999999999999999876 67899999999999999999998652 33333211111 1246889999
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
+++|.++++++++++.++. ++|||++|||.+++|+.+++++|||+||+||+++.+||+++++++++
T Consensus 224 ~~~~~~~~~v~~i~~~~~~-----~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~~~ 289 (289)
T cd02810 224 PIRPLALRWVARLAARLQL-----DIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIKKE 289 (289)
T ss_pred HHHHHHHHHHHHHHHhcCC-----CCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHhcC
Confidence 9999999999999998742 69999999999999999999999999999999999999999998763
No 20
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.96 E-value=4.9e-28 Score=240.24 Aligned_cols=249 Identities=18% Similarity=0.277 Sum_probs=187.7
Q ss_pred eCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCC
Q 014581 51 VNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISD 130 (422)
Q Consensus 51 ~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~ 130 (422)
++|+.+++|+++|++...++..+-..+.+.|.+.+.+..++.+.. .. .+..
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l--~~-----------------------~~~~---- 51 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAI--VY-----------------------DSQR---- 51 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhh--hc-----------------------CCHH----
Confidence 367899999999999987777755555668999998888875320 00 0000
Q ss_pred ChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-ccccccccccChhHHHHH
Q 014581 131 RPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-ERKMGAAVGQDCRLLEEV 209 (422)
Q Consensus 131 ~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~~~~G~~l~~~~~~v~~i 209 (422)
...++ .....+.|+++||. +.++++|.++|++++++|+|+||||++||+... ..++|+.+.++++.+.++
T Consensus 52 --~~~~~------~~~~~~~p~i~ql~-g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei 122 (319)
T TIGR00737 52 --TMRLL------DIAEDETPISVQLF-GSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKI 122 (319)
T ss_pred --HHHHh------hcCCccceEEEEEe-CCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHH
Confidence 11111 11123689999997 789999999999999999999999999996422 234566688999999999
Q ss_pred HHHHhhccCccEEEEECCCCC----ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc
Q 014581 210 CGWINAKATVPVWAKMTPNIT----DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285 (422)
Q Consensus 210 v~~vr~~~~iPv~vKl~~~~~----~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~ 285 (422)
++++++.+++||.||++..+. +..++++.+.++|+|+|++++++.. ++++|+
T Consensus 123 ~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~---------------------~~~~~~--- 178 (319)
T TIGR00737 123 VKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRA---------------------QGYSGE--- 178 (319)
T ss_pred HHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccc---------------------ccCCCc---
Confidence 999999999999999986432 3578999999999999999875421 334443
Q ss_pred hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHH-HhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCC
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFI-LLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFS 364 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l-~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~ 364 (422)
..++.++++++.+ ++|||++|||.+++|+.+++ ..|||+||+||+++.+ |++++++.+ ++....+.
T Consensus 179 -~~~~~i~~i~~~~-------~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~-P~l~~~~~~----~~~~~~~~ 245 (319)
T TIGR00737 179 -ANWDIIARVKQAV-------RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGN-PWLFRQIEQ----YLTTGKYK 245 (319)
T ss_pred -hhHHHHHHHHHcC-------CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhC-ChHHHHHHH----HHhCCCCC
Confidence 3467788888876 79999999999999999999 5899999999999998 898877654 44444332
Q ss_pred ---CHHHhhcCCc
Q 014581 365 ---SIEDFRGASI 374 (422)
Q Consensus 365 ---si~d~~G~~~ 374 (422)
+.+|.....+
T Consensus 246 ~~~~~~e~~~~~~ 258 (319)
T TIGR00737 246 PPPTFAEKLDAIL 258 (319)
T ss_pred CCCCHHHHHHHHH
Confidence 4445444333
No 21
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.96 E-value=2.4e-28 Score=229.58 Aligned_cols=218 Identities=17% Similarity=0.197 Sum_probs=168.0
Q ss_pred CCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHH-HHHHHHhhC
Q 014581 69 TNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLK-EFKQLKALY 147 (422)
Q Consensus 69 ~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~-~i~~~k~~~ 147 (422)
.+++++++..+ .||.+++|.++.+.+ ...-.| .+..... .. .+.|.+. ++.|++ +++++++
T Consensus 5 ~d~~~~~~~~~-~~~~~~lgg~~~d~~--t~~a~~--~~~~rgr----~e--f~~~~e~-----~~~~i~~e~~~~~~-- 66 (231)
T TIGR00736 5 TDAEFCRKFKD-LFAIVTLGGYNADRA--TYKASR--DIEKRGR----KE--FSFNLEE-----FNSYIIEQIKKAES-- 66 (231)
T ss_pred chHHHHHhcCc-CcCEEEECCccCCHH--HHHHHH--HHHHcCC----cc--cCcCccc-----HHHHHHHHHHHHhh--
Confidence 57888888655 499999999988651 110000 0101000 01 1344432 566765 7888863
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC-CccccccccccChhHHHHHHHHHhhccCccEEEEEC
Q 014581 148 PDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM-PERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT 226 (422)
Q Consensus 148 ~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~-~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~ 226 (422)
+.|+++|+. +.++++|.++++.+++ ++|+||||++||+.. ...++|+++.++++.+.++++++++ .++||+||++
T Consensus 67 -~~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR 142 (231)
T TIGR00736 67 -RALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIR 142 (231)
T ss_pred -cCCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeC
Confidence 569999996 6799999999999977 799999999999963 3457899999999999999999995 4899999999
Q ss_pred CCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCC
Q 014581 227 PNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFN 304 (422)
Q Consensus 227 ~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~ 304 (422)
+++. +..++++.++++|+|+|++..... |+ .+..++.|+++++.++
T Consensus 143 ~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~----------------------g~------~~a~~~~I~~i~~~~~---- 190 (231)
T TIGR00736 143 GNCIPLDELIDALNLVDDGFDGIHVDAMYP----------------------GK------PYADMDLLKILSEEFN---- 190 (231)
T ss_pred CCCCcchHHHHHHHHHHcCCCEEEEeeCCC----------------------CC------chhhHHHHHHHHHhcC----
Confidence 9876 467999999999999998853210 11 1256889999999862
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 305 DKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 305 ~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++|||++|||.|++|+.+++++|||+||+||+++.+
T Consensus 191 --~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 191 --DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred --CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 499999999999999999999999999999999865
No 22
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.96 E-value=1.7e-27 Score=236.07 Aligned_cols=233 Identities=14% Similarity=0.164 Sum_probs=179.3
Q ss_pred EeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccC
Q 014581 50 TVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELIS 129 (422)
Q Consensus 50 ~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s 129 (422)
+++++.+++|+++|++..-++..+-.-+.+.|+|.+++..++.++.. . .+
T Consensus 2 ~i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~--------~-----------------~~----- 51 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV--------W-----------------ES----- 51 (321)
T ss_pred ccCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhh--------h-----------------cC-----
Confidence 35788999999999887756666444444589998888777653210 0 00
Q ss_pred CChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC-CccccccccccChhHHHH
Q 014581 130 DRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM-PERKMGAAVGQDCRLLEE 208 (422)
Q Consensus 130 ~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~-~~~~~G~~l~~~~~~v~~ 208 (422)
+.....+ .... ...|+++|+. +.+++++.++|+.+++.|+|+||||++||+.. ..+++|+++.++|+.+.+
T Consensus 52 ----~~~~~~~--~~~~-~~~~~~vQl~-g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~e 123 (321)
T PRK10415 52 ----DKSRLRM--VHID-EPGIRTVQIA-GSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKS 123 (321)
T ss_pred ----HhHHHHh--ccCc-cCCCEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHH
Confidence 0000000 0011 1468999997 78999999999998888999999999999853 235678999999999999
Q ss_pred HHHHHhhccCccEEEEECCCCC----ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 209 VCGWINAKATVPVWAKMTPNIT----DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 209 iv~~vr~~~~iPv~vKl~~~~~----~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
+++++++.+++||.+|++..++ +..++++.+.++|+|+|++++++.. +.++|++
T Consensus 124 iv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~---------------------~~~~G~a- 181 (321)
T PRK10415 124 ILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRA---------------------CLFNGEA- 181 (321)
T ss_pred HHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccc---------------------cccCCCc-
Confidence 9999999999999999976543 4678999999999999999987532 2233322
Q ss_pred chhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH-hCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL-LGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 285 ~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~-aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
.++.++++++.+ ++|||++|||.|++|+.+++. .|||+||+||+++.+ |++++++.+.
T Consensus 182 ---~~~~i~~ik~~~-------~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~n-P~if~~~~~~ 240 (321)
T PRK10415 182 ---EYDSIRAVKQKV-------SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR-PWIFREIQHY 240 (321)
T ss_pred ---ChHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcC-ChHHHHHHHH
Confidence 357788888876 799999999999999999997 799999999999999 9999887543
No 23
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.96 E-value=1.9e-26 Score=229.13 Aligned_cols=273 Identities=19% Similarity=0.227 Sum_probs=186.4
Q ss_pred CCCCCCcceEeCCeecCCCceecCCCCCC------CHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCC
Q 014581 41 ASAEPDLSITVNGLQMPNPFVIGSGPPGT------NYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGS 114 (422)
Q Consensus 41 ~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~------~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~ 114 (422)
+.+++|++|+|+|.+|+.||+++++..+. +.+..+.+.++|.+ +-+|+..
T Consensus 36 ~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~-~~~Gs~~----------------------- 91 (326)
T cd02811 36 DLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIA-MGVGSQR----------------------- 91 (326)
T ss_pred CcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCC-eEecCch-----------------------
Confidence 57889999999999999999999986543 23444444445554 2223221
Q ss_pred CcccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCC-HHHHHHHHHHHHHhCCCEEEEccCCCCCCCcc
Q 014581 115 AKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYN-KAAWEELIDRVEETGIDAIEVNFSCPHGMPER 193 (422)
Q Consensus 115 a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~-~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~ 193 (422)
.++.++ +.+ +.++.+++..++.|+++|++.... .-.+.++.+.++..++|++|+|+++++.....
T Consensus 92 -----~~~~~~--------e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~ 157 (326)
T cd02811 92 -----AALEDP--------ELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQP 157 (326)
T ss_pred -----hhccCh--------hhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCC
Confidence 122222 222 456666666667999999974210 01333444445555799999999887752221
Q ss_pred ccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCC---
Q 014581 194 KMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCV--- 270 (422)
Q Consensus 194 ~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~--- 270 (422)
. | ..+.+.+.+.++++++.+++||++|+++.. ...+.++.+.++|+|+|+++|+.+ .....+++.+.....
T Consensus 158 ~-~---~~df~~~~~~i~~l~~~~~vPVivK~~g~g-~s~~~a~~l~~~Gvd~I~vsG~GG-t~~~~ie~~r~~~~~~~~ 231 (326)
T cd02811 158 E-G---DRDFRGWLERIEELVKALSVPVIVKEVGFG-ISRETAKRLADAGVKAIDVAGAGG-TSWARVENYRAKDSDQRL 231 (326)
T ss_pred C-C---CcCHHHHHHHHHHHHHhcCCCEEEEecCCC-CCHHHHHHHHHcCCCEEEECCCCC-Cccccccccccccccccc
Confidence 1 0 134455667788888888999999998763 457899999999999999988633 233444443221100
Q ss_pred CCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhh------
Q 014581 271 EGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY------ 344 (422)
Q Consensus 271 ~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp------ 344 (422)
..+....++ | +...++++++.+. ++|||++|||+++.|+.+++++|||+||+||+++....
T Consensus 232 ~~~~~~~g~------~-t~~~l~~~~~~~~------~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~ 298 (326)
T cd02811 232 AEYFADWGI------P-TAASLLEVRSALP------DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAV 298 (326)
T ss_pred ccccccccc------c-HHHHHHHHHHHcC------CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHH
Confidence 000000111 2 3455666766542 79999999999999999999999999999999887533
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCHHHhh
Q 014581 345 -GLVKRLCEELKDFMKMHNFSSIEDFR 370 (422)
Q Consensus 345 -~~i~~i~~~l~~~m~~~G~~si~d~~ 370 (422)
.+++.+.++|+.||..+|++|++|++
T Consensus 299 ~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 299 IETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 48999999999999999999999986
No 24
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.95 E-value=2.2e-26 Score=229.27 Aligned_cols=277 Identities=19% Similarity=0.214 Sum_probs=190.2
Q ss_pred CCCCCCCcceEeCCeecCCCceecCCCCCC------CHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCC
Q 014581 40 SASAEPDLSITVNGLQMPNPFVIGSGPPGT------NYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANG 113 (422)
Q Consensus 40 ~~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~------~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~ 113 (422)
.+.+++|++|+|+|.+|++||+++|+..+. +.+..+.+.++|.... +|+..
T Consensus 36 ~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~-~Gs~~---------------------- 92 (333)
T TIGR02151 36 INLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMG-VGSQR---------------------- 92 (333)
T ss_pred CCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeE-EcCch----------------------
Confidence 567889999999999999999999987654 3344444455665533 23211
Q ss_pred CCcccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHH-HHHHHHHHHHHhCCCEEEEccCCCCCCCc
Q 014581 114 SAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA-AWEELIDRVEETGIDAIEVNFSCPHGMPE 192 (422)
Q Consensus 114 ~a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~-~~~~~a~~~~~aGaD~iElN~scP~~~~~ 192 (422)
.++.+++ +.+.+..+++..++.|+++|++.....+ .+.++.+.++..++|++++|+.|++....
T Consensus 93 ------~~~~~~~---------~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~ 157 (333)
T TIGR02151 93 ------AALKDPE---------TADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQ 157 (333)
T ss_pred ------hhccChh---------hHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccC
Confidence 1223322 2223344555457999999997421111 25555555555679999999999885322
Q ss_pred cccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCC-C
Q 014581 193 RKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCV-E 271 (422)
Q Consensus 193 ~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~-~ 271 (422)
... ..+.+.+.+.++++++.+++||+||..++. ...+.++.+.++|+|+|+++|+.+. ..+++++.+..... .
T Consensus 158 p~g----~~~f~~~le~i~~i~~~~~vPVivK~~g~g-~~~~~a~~L~~aGvd~I~Vsg~gGt-~~~~ie~~r~~~~~~~ 231 (333)
T TIGR02151 158 PEG----DRNFKGWLEKIAEICSQLSVPVIVKEVGFG-ISKEVAKLLADAGVSAIDVAGAGGT-SWAQVENYRAKGSNLA 231 (333)
T ss_pred CCC----CcCHHHHHHHHHHHHHhcCCCEEEEecCCC-CCHHHHHHHHHcCCCEEEECCCCCC-cccchhhhcccccccc
Confidence 211 123445668888888888999999998753 4678999999999999999997542 34566654321100 0
Q ss_pred CCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh----hhH--
Q 014581 272 GYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----GYG-- 345 (422)
Q Consensus 272 ~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----Gp~-- 345 (422)
.+-...|+ | +...+.++++.. .++|||++|||+++.|+.++|.+|||+|++|++++.. |++
T Consensus 232 ~~~~~~g~------~-t~~~l~~~~~~~------~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v 298 (333)
T TIGR02151 232 SFFNDWGI------P-TAASLLEVRSDA------PDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAV 298 (333)
T ss_pred hhhhcccH------h-HHHHHHHHHhcC------CCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHH
Confidence 00000111 2 234455555411 2799999999999999999999999999999999963 455
Q ss_pred --HHHHHHHHHHHHHHHcCCCCHHHhhcCC
Q 014581 346 --LVKRLCEELKDFMKMHNFSSIEDFRGAS 373 (422)
Q Consensus 346 --~i~~i~~~l~~~m~~~G~~si~d~~G~~ 373 (422)
+++.+.++|+.||...|++|++|+++..
T Consensus 299 ~~~i~~~~~eL~~~m~~~G~~~i~el~~~~ 328 (333)
T TIGR02151 299 IEEIELIIEELKVAMFLTGAKTIAELKKVP 328 (333)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHccCC
Confidence 7899999999999999999999998753
No 25
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.95 E-value=5.7e-26 Score=227.55 Aligned_cols=275 Identities=20% Similarity=0.268 Sum_probs=193.8
Q ss_pred CCCCCCCcceEeCCeecCCCceecCCCCCCC------HHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCC
Q 014581 40 SASAEPDLSITVNGLQMPNPFVIGSGPPGTN------YTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANG 113 (422)
Q Consensus 40 ~~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~------~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~ 113 (422)
++..++|++|+|+|.+++.||+++++..+.. .+..+.+.++|.... +++..
T Consensus 43 ~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~-~Gs~~---------------------- 99 (352)
T PRK05437 43 LDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMG-VGSQR---------------------- 99 (352)
T ss_pred CChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeE-ecccH----------------------
Confidence 4688999999999999999999999776432 233333444565532 23321
Q ss_pred CCcccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCC----CCHHHHHHHHHHHHHhCCCEEEEccCCCCC
Q 014581 114 SAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEE----YNKAAWEELIDRVEETGIDAIEVNFSCPHG 189 (422)
Q Consensus 114 ~a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~----~~~~~~~~~a~~~~~aGaD~iElN~scP~~ 189 (422)
.++.+ .+ +.+.++.+++..|+.|+++||+.. .++++..+ .++..++|++|+|+.||+.
T Consensus 100 ------~~~~~--------~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~---~~~~~~adal~l~l~~~qe 161 (352)
T PRK05437 100 ------AALKD--------PE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQR---AVEMIEADALQIHLNPLQE 161 (352)
T ss_pred ------hhccC--------hh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHH---HHHhcCCCcEEEeCccchh
Confidence 11121 22 445566777767899999999742 22444444 4444579999999998875
Q ss_pred CCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCC-
Q 014581 190 MPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEP- 268 (422)
Q Consensus 190 ~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~- 268 (422)
..... | ..+.+.+.+.++++++.+++||+||+.++. ...+.++.+.++|+|+|+++|+.+ ...+++++.+...
T Consensus 162 ~~~p~-g---~~~f~~~le~i~~i~~~~~vPVivK~~g~g-~s~~~a~~l~~~Gvd~I~Vsg~GG-t~~~~ie~~R~~~~ 235 (352)
T PRK05437 162 LVQPE-G---DRDFRGWLDNIAEIVSALPVPVIVKEVGFG-ISKETAKRLADAGVKAIDVAGAGG-TSWAAIENYRARDD 235 (352)
T ss_pred hcCCC-C---cccHHHHHHHHHHHHHhhCCCEEEEeCCCC-CcHHHHHHHHHcCCCEEEECCCCC-CCccchhhhhhhcc
Confidence 32211 0 134455668888888888999999998753 447899999999999999998753 2345666533210
Q ss_pred CCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh----hh
Q 014581 269 CVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----GY 344 (422)
Q Consensus 269 ~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----Gp 344 (422)
....+....|+ | +...+.++++... ++|||++|||+++.|+.+++++|||+|++||++++. |+
T Consensus 236 ~~~~~~~~~g~------p-t~~~l~~i~~~~~------~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~ 302 (352)
T PRK05437 236 RLASYFADWGI------P-TAQSLLEARSLLP------DLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGE 302 (352)
T ss_pred ccccccccccC------C-HHHHHHHHHHhcC------CCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccH
Confidence 00000011122 3 3456777777631 799999999999999999999999999999998875 56
Q ss_pred H----HHHHHHHHHHHHHHHcCCCCHHHhhcCCc
Q 014581 345 G----LVKRLCEELKDFMKMHNFSSIEDFRGASI 374 (422)
Q Consensus 345 ~----~i~~i~~~l~~~m~~~G~~si~d~~G~~~ 374 (422)
. +++.+.++|+.+|...|+++++|+++...
T Consensus 303 ~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~ 336 (352)
T PRK05437 303 EAVIELIEQWIEELKIAMFLTGAKNIAELRKVPL 336 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCCE
Confidence 5 89999999999999999999999998644
No 26
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.95 E-value=1.1e-26 Score=229.39 Aligned_cols=228 Identities=14% Similarity=0.174 Sum_probs=176.6
Q ss_pred CCceecCCCCCCCHHHHHHHHH-cCC-cEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFD-EGW-GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLET 135 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~-~G~-Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~ 135 (422)
+||++|.+..-++.. +|.+.+ .|. +.+++..++.+.... .+ ...
T Consensus 1 ~~~~lAPM~g~Td~~-fR~l~~~~g~~~~~~TEMv~a~~l~~-------------------------~~--------~~~ 46 (318)
T TIGR00742 1 GRFSVAPMLDWTDRH-FRYFLRLLSKHTLLYTEMITAKAIIH-------------------------GD--------KKD 46 (318)
T ss_pred CCEEEECCCCCcCHH-HHHHHHHhCCCCEEEeCCEEEhhhhc-------------------------cC--------HHH
Confidence 578999877745544 566554 686 888888776532000 00 011
Q ss_pred HHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-ccccccccccChhHHHHHHHHHh
Q 014581 136 MLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-ERKMGAAVGQDCRLLEEVCGWIN 214 (422)
Q Consensus 136 ~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~~~~G~~l~~~~~~v~~iv~~vr 214 (422)
+ + ...-.+.|+++||. +.+++++.++|+.+++.|+|+|+||++||+... ..++|+++.++|+.+.+++++++
T Consensus 47 ~---l---~~~~~e~p~~vQl~-g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~ 119 (318)
T TIGR00742 47 I---L---KFSPEESPVALQLG-GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQ 119 (318)
T ss_pred H---c---ccCCCCCcEEEEEc-cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHH
Confidence 1 1 11112679999997 789999999999999999999999999999743 35689999999999999999999
Q ss_pred hccCccEEEEECCCCCC------hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC---cc
Q 014581 215 AKATVPVWAKMTPNITD------ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA---VH 285 (422)
Q Consensus 215 ~~~~iPv~vKl~~~~~~------~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~---i~ 285 (422)
+.+++||.||++..+++ ..++++.+.++|++.|++++|+.. ..|++|+. +.
T Consensus 120 ~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------------------~qg~sg~~~~~~~ 179 (318)
T TIGR00742 120 EAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------------------LSGLSPKENREIP 179 (318)
T ss_pred HHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------------------hcCCCccccccCC
Confidence 99999999999986543 357789999999999999998741 12344432 45
Q ss_pred hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|..++.|+++++.+. ++|||++|||.|++|+.+++. |||+||+||+++.+ |+++.++.+.+
T Consensus 180 ~~~~~~i~~vk~~~~------~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~n-P~if~~~~~~l 240 (318)
T TIGR00742 180 PLRYERVYQLKKDFP------HLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYEN-PYLLANVDREI 240 (318)
T ss_pred chhHHHHHHHHHhCC------CCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhC-CHHHHHHHHHh
Confidence 666788888888753 799999999999999999996 99999999999999 99998876543
No 27
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.95 E-value=1e-26 Score=220.37 Aligned_cols=230 Identities=23% Similarity=0.247 Sum_probs=172.4
Q ss_pred CceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHH
Q 014581 59 PFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLK 138 (422)
Q Consensus 59 Pi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~ 138 (422)
|+++|++-.-.+.++.+.+.+. +|+.+++....+.. .....| .+... | -.|++++.+.+.+.+
T Consensus 1 ~~~lApMag~td~~f~~~~~~~-~g~~~~Gg~~~d~~--~~~aa~--~~~~~----------~--~~ef~~~~~~~~~~~ 63 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADH-AGLVFLGGYNLDER--TIEAAR--KLVKR----------G--RKEFLPDDPLEFIEG 63 (233)
T ss_pred CceeeecCCCcCHHHHHhhCcc-CCEEEEcccccCHH--HHHHHH--HHHhc----------C--CccccccchHHHHHH
Confidence 7889987766788877655444 78888888775431 000000 00000 1 124444444555556
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC-CccccccccccChhHHHHHHHHHhhcc
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM-PERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~-~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
+++.+++. +.|+++||. +.+++++.++++.+++ ++|+||||++||+.. ..++.|+.+.++++.+.++++++++ .
T Consensus 64 ~~~~~~~~--~~p~~vqi~-g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~ 138 (233)
T cd02911 64 EIKALKDS--NVLVGVNVR-SSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-T 138 (233)
T ss_pred HHHHhhcc--CCeEEEEec-CCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c
Confidence 77777653 679999997 7889999999999987 579999999999963 2456789999999999999999998 5
Q ss_pred CccEEEEECCCC-CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHH
Q 014581 218 TVPVWAKMTPNI-TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIA 296 (422)
Q Consensus 218 ~iPv~vKl~~~~-~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~ 296 (422)
++||+||+++++ .+..++++.+.++|+|+|++.++.. + . +..++.|++++
T Consensus 139 ~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~----------------------g----~---~ad~~~I~~i~ 189 (233)
T cd02911 139 GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDP----------------------G----N---HADLKKIRDIS 189 (233)
T ss_pred CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCC----------------------C----C---CCcHHHHHHhc
Confidence 999999999987 4788999999999999887654321 1 0 12245565554
Q ss_pred HHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 297 KMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 297 ~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
. ++|||++|||.|++|+.++++.|||+||+||+ .+ |++++++.
T Consensus 190 --~-------~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~~-p~~~~~~~ 232 (233)
T cd02911 190 --T-------ELFIIGNNSVTTIESAKEMFSYGADMVSVARA--SL-PENIEWLV 232 (233)
T ss_pred --C-------CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--CC-chHHHHhh
Confidence 2 79999999999999999999999999999999 55 89888764
No 28
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.94 E-value=1.3e-25 Score=221.36 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=146.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-ccccccccccChhHHHHHHHHHhhcc--CccEEEEE
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-ERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKM 225 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl 225 (422)
+.|+++||. +.+++++.++|+++++.|+|+||||++||.... ..++|+++.++++.+.++++++++.+ ++||.||+
T Consensus 62 e~p~~vQl~-g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKi 140 (312)
T PRK10550 62 GTLVRIQLL-GQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKV 140 (312)
T ss_pred CCcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 579999997 789999999999999999999999999998532 34567899999999999999999987 49999999
Q ss_pred CCCCCC---hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhcc
Q 014581 226 TPNITD---ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSE 302 (422)
Q Consensus 226 ~~~~~~---~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~ 302 (422)
+.++++ ..++++.+.++|+|.|++++++.. .+|+|++. -++.++++++.+
T Consensus 141 R~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------------------~~y~g~~~---~~~~i~~ik~~~--- 193 (312)
T PRK10550 141 RLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------------------DGYRAEHI---NWQAIGEIRQRL--- 193 (312)
T ss_pred ECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------------------cCCCCCcc---cHHHHHHHHhhc---
Confidence 987643 578999999999999999986531 35666543 246788888876
Q ss_pred CCCCCceEEEecCCCCHHHHHHHHH-hCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 303 FNDKDYSLSGIGGVETGGDAAEFIL-LGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 303 ~~~~~ipIIa~GGI~s~~da~~~l~-aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
++|||++|||.|++|+.+++. .|||+||+||+++.+ |++++++.
T Consensus 194 ----~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~n-P~lf~~~~ 238 (312)
T PRK10550 194 ----TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNI-PNLSRVVK 238 (312)
T ss_pred ----CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhC-cHHHHHhh
Confidence 799999999999999999995 899999999999999 99998765
No 29
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.2e-25 Score=219.40 Aligned_cols=230 Identities=19% Similarity=0.249 Sum_probs=182.6
Q ss_pred EeCCeecCCCceecCCCCCCCHHHHHHHHH-cCC-cEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccc
Q 014581 50 TVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGW-GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIEL 127 (422)
Q Consensus 50 ~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~-~G~-Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~ 127 (422)
++..+.+++++++|.+.+-++.. ++.++. .|. +.+++..++.++. ......++. .+..
T Consensus 3 ~~~~~~~~~~~~lAPM~gvtd~~-fR~l~~~~ga~~~~~TEmv~~~~~-~~~~~~~~~---------------~~~~--- 62 (323)
T COG0042 3 KIGLIELRNRVILAPMAGVTDLP-FRRLARELGAYDLLYTEMVSAKAL-LHGRKKFLL---------------LLDE--- 62 (323)
T ss_pred ccccccccCcEEEecCCCCccHH-HHHHHHHhCCCceEEEccEEEhhh-ccCCcchhh---------------hcCc---
Confidence 45678899999999988744544 666665 488 9999998887541 111111000 0000
Q ss_pred cCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC-CccccccccccChhHH
Q 014581 128 ISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM-PERKMGAAVGQDCRLL 206 (422)
Q Consensus 128 ~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~-~~~~~G~~l~~~~~~v 206 (422)
. ..+.|+++||. +.+++.+.++|+.+++.|+|.|+||++||... ...++|++|..+|+.+
T Consensus 63 ---------------~---~~e~p~~vQl~-gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv 123 (323)
T COG0042 63 ---------------L---EEERPVAVQLG-GSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELL 123 (323)
T ss_pred ---------------C---CCCCCEEEEec-CCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHH
Confidence 0 01678999997 78899999999999999999999999999864 3356899999999999
Q ss_pred HHHHHHHhhcc-CccEEEEECCCCCC----hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 207 EEVCGWINAKA-TVPVWAKMTPNITD----ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 207 ~~iv~~vr~~~-~iPv~vKl~~~~~~----~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
.++++++++++ ++||.||++.++++ ..++++.+.++|++.|+||+|+.. .+++|
T Consensus 124 ~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~---------------------~~y~~ 182 (323)
T COG0042 124 AEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRA---------------------QGYLG 182 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHH---------------------hcCCC
Confidence 99999999999 59999999988754 457999999999999999998753 22333
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH-hCCCEEEEhhHHHhhhhHHHHHH
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL-LGANTVQVCTGVMMHGYGLVKRL 350 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~-aGAd~V~vgtall~~Gp~~i~~i 350 (422)
|..++.|+++++.++ ++|||++|+|.|++|+.+++. .|+|+||+|++.+.+ |+++.++
T Consensus 183 ----~ad~~~I~~vk~~~~------~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~n-P~l~~~i 241 (323)
T COG0042 183 ----PADWDYIKELKEAVP------SIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGN-PWLFRQI 241 (323)
T ss_pred ----ccCHHHHHHHHHhCC------CCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccC-CcHHHHH
Confidence 345789999999883 499999999999999999998 689999999999998 8887764
No 30
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.93 E-value=7.6e-25 Score=218.21 Aligned_cols=236 Identities=14% Similarity=0.171 Sum_probs=177.2
Q ss_pred CCeecCCCceecCCCCCCCHHHHHHHHH-cCC-cEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccC
Q 014581 52 NGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGW-GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELIS 129 (422)
Q Consensus 52 ~Gl~l~nPi~~AAg~~~~~~~~~~~~~~-~G~-Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s 129 (422)
+....++|+++|.+..-++.. +|.++. .|. +.+++..+..+. +. + .+
T Consensus 5 ~~~~~~~~~~lAPM~g~td~~-fR~~~~~~g~~~~~~temv~~~~---------l~------------~----~~----- 53 (333)
T PRK11815 5 MSKLPSRRFSVAPMMDWTDRH-CRYFHRLLSRHALLYTEMVTTGA---------II------------H----GD----- 53 (333)
T ss_pred cccCCCCCEEEeCCCCCcCHH-HHHHHHHhCCCCEEEECCEEecc---------cc------------c----cC-----
Confidence 456678999999877745554 566555 676 778877665422 00 0 00
Q ss_pred CChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-ccccccccccChhHHHH
Q 014581 130 DRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-ERKMGAAVGQDCRLLEE 208 (422)
Q Consensus 130 ~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~~~~G~~l~~~~~~v~~ 208 (422)
...+ + ...-.+.|+++||. +.+++++.++|+.++++|+|+||||++||+... ..+||+++.++++.+.+
T Consensus 54 ---~~~~---l---~~~~~e~p~~vQl~-g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~e 123 (333)
T PRK11815 54 ---RERL---L---AFDPEEHPVALQLG-GSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAD 123 (333)
T ss_pred ---HHHH---h---ccCCCCCcEEEEEe-CCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHH
Confidence 0111 1 11112679999997 789999999999999999999999999998643 34689999999999999
Q ss_pred HHHHHhhccCccEEEEECCCCCC------hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 209 VCGWINAKATVPVWAKMTPNITD------ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 209 iv~~vr~~~~iPv~vKl~~~~~~------~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
+++++++.+++||.||++..+.+ ..++++.+.++|+++|+++.+.....+ +.+....
T Consensus 124 iv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g-----------------~~~~~~~ 186 (333)
T PRK11815 124 CVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKG-----------------LSPKENR 186 (333)
T ss_pred HHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcC-----------------CCccccc
Confidence 99999999999999999765432 467889999999999999976531000 0111112
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
.+.|..++.++++++.+. ++|||++|||.|++|+.+++. |||+||+||+++.+ |++++++.+.
T Consensus 187 ~~~~~~~~~i~~v~~~~~------~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~n-P~~~~~~~~~ 249 (333)
T PRK11815 187 EIPPLDYDRVYRLKRDFP------HLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHN-PYLLAEVDRE 249 (333)
T ss_pred cCCCcCHHHHHHHHHhCC------CCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhC-CHHHHHHHHH
Confidence 344666788888887642 799999999999999999986 89999999999998 9999887643
No 31
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.93 E-value=3.2e-24 Score=211.01 Aligned_cols=236 Identities=21% Similarity=0.252 Sum_probs=177.6
Q ss_pred CCCCCcceEeCCeecCCCceecCCCCCC------CHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCC
Q 014581 42 SAEPDLSITVNGLQMPNPFVIGSGPPGT------NYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSA 115 (422)
Q Consensus 42 ~~~~dL~~~~~Gl~l~nPi~~AAg~~~~------~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a 115 (422)
..++|++++++|.+|+.||+++++..+. +....+.+.++|...++. +.+.
T Consensus 49 ~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~-~~~~----------------------- 104 (299)
T cd02809 49 VSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLS-TVST----------------------- 104 (299)
T ss_pred CCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEec-CCCc-----------------------
Confidence 5688999999999999999999874432 224344445567654432 1100
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccc
Q 014581 116 KGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKM 195 (422)
Q Consensus 116 ~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~ 195 (422)
. +.++ + ++.. ..|+++|+....+++...+.++++++.|+|+|++|++||+... +
T Consensus 105 -------~--------~~~~----i---~~~~-~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~-~-- 158 (299)
T cd02809 105 -------T--------SLEE----V---AAAA-PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGR-R-- 158 (299)
T ss_pred -------C--------CHHH----H---HHhc-CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC-C--
Confidence 0 0222 2 2222 3699999974447888888889888899999999999998421 1
Q ss_pred ccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCc
Q 014581 196 GAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYST 275 (422)
Q Consensus 196 G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~ 275 (422)
...++++++++.+++||++|... ..+.++.+.++|+|+|+++|+.+. ..
T Consensus 159 ---------~~~~~i~~l~~~~~~pvivK~v~----s~~~a~~a~~~G~d~I~v~~~gG~--~~---------------- 207 (299)
T cd02809 159 ---------LTWDDLAWLRSQWKGPLILKGIL----TPEDALRAVDAGADGIVVSNHGGR--QL---------------- 207 (299)
T ss_pred ---------CCHHHHHHHHHhcCCCEEEeecC----CHHHHHHHHHCCCCEEEEcCCCCC--CC----------------
Confidence 24467888888889999999642 257799999999999999987532 11
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhh--------hHHH
Q 014581 276 PGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG--------YGLV 347 (422)
Q Consensus 276 ~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~G--------p~~i 347 (422)
.++ +.++..+.++++.+++ ++|||++|||++++|+.+++++|||+||+||.++..- ..++
T Consensus 208 ~~g-------~~~~~~l~~i~~~~~~-----~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i 275 (299)
T cd02809 208 DGA-------PATIDALPEIVAAVGG-----RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVL 275 (299)
T ss_pred CCC-------cCHHHHHHHHHHHhcC-----CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHH
Confidence 111 3456788888887742 5999999999999999999999999999999998641 2478
Q ss_pred HHHHHHHHHHHHHcCCCCHHHhh
Q 014581 348 KRLCEELKDFMKMHNFSSIEDFR 370 (422)
Q Consensus 348 ~~i~~~l~~~m~~~G~~si~d~~ 370 (422)
+.+.++|+.+|...|+++++|++
T Consensus 276 ~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 276 EILRDELERAMALLGCASLADLD 298 (299)
T ss_pred HHHHHHHHHHHHHHCCCCHHHhC
Confidence 99999999999999999999985
No 32
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.91 E-value=1e-22 Score=192.71 Aligned_cols=171 Identities=21% Similarity=0.283 Sum_probs=144.4
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-ccccccccccChhHHHHHHHHHhhccCccEEEEECC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-ERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP 227 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~ 227 (422)
+.|+++||. +.++++|.+.+++++++|+|+||||++||+... ...||++++.+++.+.++++++++.+.+|+.+|++.
T Consensus 54 ~~p~~~qi~-g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 54 ERPLIVQLG-GSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred CCCEEEEEc-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 689999997 678999999999999999999999999998632 246899999999999999999999888999999986
Q ss_pred CCC---ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCC
Q 014581 228 NIT---DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFN 304 (422)
Q Consensus 228 ~~~---~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~ 304 (422)
..+ +..++++.+.+.|+|+|+++++.... ++.+ +..++.++++++..
T Consensus 133 ~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~---------------------~~~~----~~~~~~~~~i~~~~----- 182 (231)
T cd02801 133 GWDDEEETLELAKALEDAGASALTVHGRTREQ---------------------RYSG----PADWDYIAEIKEAV----- 182 (231)
T ss_pred ccCCchHHHHHHHHHHHhCCCEEEECCCCHHH---------------------cCCC----CCCHHHHHHHHhCC-----
Confidence 543 46788999999999999998764310 0111 22356777777754
Q ss_pred CCCceEEEecCCCCHHHHHHHHHh-CCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 305 DKDYSLSGIGGVETGGDAAEFILL-GANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 305 ~~~ipIIa~GGI~s~~da~~~l~a-GAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
++||+++|||.+++|+.+++.. |||+||+||+++.+ |++++++.+.
T Consensus 183 --~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~-P~~~~~~~~~ 229 (231)
T cd02801 183 --SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGN-PWLFREIKEL 229 (231)
T ss_pred --CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhC-CHHHHhhhhc
Confidence 8999999999999999999997 89999999999998 9999988654
No 33
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.89 E-value=3.7e-23 Score=204.15 Aligned_cols=167 Identities=22% Similarity=0.327 Sum_probs=128.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-ccccccccccChhHHHHHHHHHhhccCccEEEEECC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-ERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP 227 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~ 227 (422)
+.|+++||+ +.+++.+.++|+.+.+.|+|+|+||++||.... .+++|+++.++|+.+.++++++++.+++||.||++.
T Consensus 53 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~ 131 (309)
T PF01207_consen 53 ERPLIVQLF-GNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRL 131 (309)
T ss_dssp T-TEEEEEE--S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEES
T ss_pred ccceeEEEe-eccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccc
Confidence 469999997 789999999999998889999999999998542 357899999999999999999999999999999998
Q ss_pred CCCC----hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccC
Q 014581 228 NITD----ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEF 303 (422)
Q Consensus 228 ~~~~----~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~ 303 (422)
.+.+ ..++++.+.++|+++|++|.|+.. ..++| +..++.++++++.+
T Consensus 132 g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~---------------------q~~~~----~a~w~~i~~i~~~~---- 182 (309)
T PF01207_consen 132 GWDDSPEETIEFARILEDAGVSAITVHGRTRK---------------------QRYKG----PADWEAIAEIKEAL---- 182 (309)
T ss_dssp ECT--CHHHHHHHHHHHHTT--EEEEECS-TT---------------------CCCTS-------HHHHHHCHHC-----
T ss_pred ccccchhHHHHHHHHhhhcccceEEEecCchh---------------------hcCCc----ccchHHHHHHhhcc----
Confidence 7652 688999999999999999998643 12233 34578888888877
Q ss_pred CCCCceEEEecCCCCHHHHHHHHH-hCCCEEEEhhHHHhhhhHHHHH
Q 014581 304 NDKDYSLSGIGGVETGGDAAEFIL-LGANTVQVCTGVMMHGYGLVKR 349 (422)
Q Consensus 304 ~~~~ipIIa~GGI~s~~da~~~l~-aGAd~V~vgtall~~Gp~~i~~ 349 (422)
++|||++|||.|.+|+.+++. .|+|+||+||+++.+ |++|.+
T Consensus 183 ---~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~n-P~lf~~ 225 (309)
T PF01207_consen 183 ---PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGN-PWLFRE 225 (309)
T ss_dssp ---TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC--CCHHCH
T ss_pred ---cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhc-CHHhhh
Confidence 799999999999999999997 599999999999999 999885
No 34
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3e-22 Score=194.66 Aligned_cols=167 Identities=18% Similarity=0.243 Sum_probs=146.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCc-cccccccccChhHHHHHHHHHhhccCccEEEEECC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPE-RKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP 227 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~ 227 (422)
|.|+|+|++ +.+++.+.++|+.+++. +|+|.||++||+.... .+||+.+..+++++.++++.++..++.||.+|++.
T Consensus 73 D~PLIvQf~-~ndp~~ll~Aa~lv~~y-~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI 150 (358)
T KOG2335|consen 73 DRPLIVQFG-GNDPENLLKAARLVQPY-CDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRI 150 (358)
T ss_pred CCceEEEEc-CCCHHHHHHHHHHhhhh-cCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 899999996 78999999999999885 6999999999986443 46999999999999999999999999999999987
Q ss_pred CCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCC
Q 014581 228 NIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFND 305 (422)
Q Consensus 228 ~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~ 305 (422)
+.+ +..+.++.++++|++.++||+|+... .|..+ .|..++.|+.+++.++
T Consensus 151 ~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~-------------------kg~~~----~pad~~~i~~v~~~~~----- 202 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDAGVSLLTVHGRTREQ-------------------KGLKT----GPADWEAIKAVRENVP----- 202 (358)
T ss_pred cCcHHHHHHHHHHHHhCCCcEEEEecccHHh-------------------cCCCC----CCcCHHHHHHHHHhCc-----
Confidence 543 57899999999999999999987531 12222 2667888999999884
Q ss_pred CCceEEEecCCCCHHHHHHHHH-hCCCEEEEhhHHHhhhhHHH
Q 014581 306 KDYSLSGIGGVETGGDAAEFIL-LGANTVQVCTGVMMHGYGLV 347 (422)
Q Consensus 306 ~~ipIIa~GGI~s~~da~~~l~-aGAd~V~vgtall~~Gp~~i 347 (422)
++|||++|+|.+.+|+..++. .|||+||++++++.| |++|
T Consensus 203 -~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~N-Pa~F 243 (358)
T KOG2335|consen 203 -DIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYN-PALF 243 (358)
T ss_pred -CCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcC-chhh
Confidence 599999999999999999998 999999999999999 8887
No 35
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.88 E-value=2.6e-21 Score=192.86 Aligned_cols=253 Identities=13% Similarity=0.190 Sum_probs=179.2
Q ss_pred ceEeCCeecCCCceecCCCC-------C-CCH---HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCc
Q 014581 48 SITVNGLQMPNPFVIGSGPP-------G-TNY---TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAK 116 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~-------~-~~~---~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~ 116 (422)
+.++.+++++|.|+.++... + .+. +.+.+.++.|+|.|+++.+..++. +...+.
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~--~~~~~~------------- 70 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPE--GRISDK------------- 70 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECcc--ccCCCC-------------
Confidence 56789999999999998531 1 122 334444557999999998776441 111111
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC-C--------------------------CC-------H
Q 014581 117 GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME-E--------------------------YN-------K 162 (422)
Q Consensus 117 ~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~-~--------------------------~~-------~ 162 (422)
+.+++++..++.|.+....+++. +..+++|+.. | .+ .
T Consensus 71 -------~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii 141 (337)
T PRK13523 71 -------DLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETV 141 (337)
T ss_pred -------ceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 11222322344554444455542 6678888731 0 11 2
Q ss_pred HHHHHHHHHHHHhCCCEEEEccC---------CCCCCCc-cccccccccChhHHHHHHHHHhhccCccEEEEECCC----
Q 014581 163 AAWEELIDRVEETGIDAIEVNFS---------CPHGMPE-RKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN---- 228 (422)
Q Consensus 163 ~~~~~~a~~~~~aGaD~iElN~s---------cP~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~---- 228 (422)
++|.+.|++++++|+|+||||.+ ||.+... ..||++++++.+.+.+|+++||+.++.||.+|++++
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 45677888999999999999977 7876322 258999999999999999999999899999999973
Q ss_pred ----CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCC
Q 014581 229 ----ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFN 304 (422)
Q Consensus 229 ----~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~ 304 (422)
.++..++++.+.++|+|.|.++.+.... .+ ...+.|. -+...+++++.+
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~--------~~---------~~~~~~~-----~~~~~~~ik~~~----- 274 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP--------AR---------IDVYPGY-----QVPFAEHIREHA----- 274 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--------CC---------CCCCccc-----cHHHHHHHHhhc-----
Confidence 1235688899999999999998764210 00 0011121 134456677765
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 305 DKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 305 ~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~l 354 (422)
++||+++|+|.+++++.++|..| ||+|++||+++.+ |++++++.+++
T Consensus 275 --~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iad-P~~~~k~~~~~ 322 (337)
T PRK13523 275 --NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRN-PYFPRIAAKEL 322 (337)
T ss_pred --CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhC-ccHHHHHHHHc
Confidence 79999999999999999999987 9999999999999 99999998876
No 36
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.88 E-value=1.5e-20 Score=187.20 Aligned_cols=251 Identities=22% Similarity=0.291 Sum_probs=177.1
Q ss_pred CCCCcceEeCCeecCCCceecCCCCC----CCH--HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCc
Q 014581 43 AEPDLSITVNGLQMPNPFVIGSGPPG----TNY--TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAK 116 (422)
Q Consensus 43 ~~~dL~~~~~Gl~l~nPi~~AAg~~~----~~~--~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~ 116 (422)
+.+|++++++|.++.-||++|+.... .++ ...+.+.++|..+++ .|.+.
T Consensus 50 ~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~l-ss~s~------------------------ 104 (344)
T cd02922 50 EKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMI-STNAS------------------------ 104 (344)
T ss_pred CCCCCceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEe-cCccc------------------------
Confidence 67899999999999999999975421 222 334555566776543 22110
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-c---
Q 014581 117 GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-E--- 192 (422)
Q Consensus 117 ~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~--- 192 (422)
. ++|+ |.+ ...|+.|+..|+-...+.+...++.++++++|+++|.+++..|.... +
T Consensus 105 --------~------s~e~----v~~--~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~ 164 (344)
T cd02922 105 --------C------SLEE----IVD--ARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDE 164 (344)
T ss_pred --------C------CHHH----HHH--hcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhh
Confidence 0 1333 211 11245788899854456677888999999999999999998874311 0
Q ss_pred cc-c-------------------ccc-c--ccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEE
Q 014581 193 RK-M-------------------GAA-V--GQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 193 ~~-~-------------------G~~-l--~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v 249 (422)
++ + +.. + ..++...++.++++++.+++||+||-. . ..+.++.+.++|+|+|++
T Consensus 165 r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv---~-~~~dA~~a~~~G~d~I~v 240 (344)
T cd02922 165 RLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGV---Q-TVEDAVLAAEYGVDGIVL 240 (344)
T ss_pred hhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcC---C-CHHHHHHHHHcCCCEEEE
Confidence 00 0 000 0 123456678899999999999999943 2 367899999999999999
Q ss_pred ecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC
Q 014581 250 INTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG 329 (422)
Q Consensus 250 ~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG 329 (422)
+|+.+. .+| +. +.+...+.++++.+.... .++|||++|||.++.|+.|+|++|
T Consensus 241 snhgG~--~~d----------------~~-------~~~~~~L~~i~~~~~~~~--~~~~vi~~GGIr~G~Dv~kalaLG 293 (344)
T cd02922 241 SNHGGR--QLD----------------TA-------PAPIEVLLEIRKHCPEVF--DKIEVYVDGGVRRGTDVLKALCLG 293 (344)
T ss_pred ECCCcc--cCC----------------CC-------CCHHHHHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHcC
Confidence 997642 222 01 112334555555432110 169999999999999999999999
Q ss_pred CCEEEEhhHHHhhhhH---------HHHHHHHHHHHHHHHcCCCCHHHhh
Q 014581 330 ANTVQVCTGVMMHGYG---------LVKRLCEELKDFMKMHNFSSIEDFR 370 (422)
Q Consensus 330 Ad~V~vgtall~~Gp~---------~i~~i~~~l~~~m~~~G~~si~d~~ 370 (422)
|++|++||++++. +. +++.+.+||+.+|...|+++++|+.
T Consensus 294 A~aV~iG~~~l~~-l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~ 342 (344)
T cd02922 294 AKAVGLGRPFLYA-LSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLG 342 (344)
T ss_pred CCEEEECHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhC
Confidence 9999999999985 44 7899999999999999999999985
No 37
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.87 E-value=3e-21 Score=192.24 Aligned_cols=256 Identities=16% Similarity=0.214 Sum_probs=177.2
Q ss_pred ceEeCCeecCCCceecCCCCC-------CCH---HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcc
Q 014581 48 SITVNGLQMPNPFVIGSGPPG-------TNY---TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~-------~~~---~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~ 117 (422)
+.++.+++++|.|+.+++... .+. +...+.++.|+|.|+++.+...+. +...|
T Consensus 3 p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~--~~~~~--------------- 65 (327)
T cd02803 3 PIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPE--GKGYP--------------- 65 (327)
T ss_pred CcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCc--ccCCC---------------
Confidence 457789999999999975421 122 333444456999999998877541 11111
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC------------------------------CCC------
Q 014581 118 QIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME------------------------------EYN------ 161 (422)
Q Consensus 118 ~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~------------------------------~~~------ 161 (422)
..++++++..++.|.+....+++. +..+++|+.. ..+
T Consensus 66 -----~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~ 138 (327)
T cd02803 66 -----GQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQ 138 (327)
T ss_pred -----CCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 112334444455665554444432 3333433320 011
Q ss_pred -HHHHHHHHHHHHHhCCCEEEEccC---------CCCCCCc-cccccccccChhHHHHHHHHHhhcc--CccEEEEECCC
Q 014581 162 -KAAWEELIDRVEETGIDAIEVNFS---------CPHGMPE-RKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPN 228 (422)
Q Consensus 162 -~~~~~~~a~~~~~aGaD~iElN~s---------cP~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~ 228 (422)
.++|.+.|++++++|+|+||||.+ ||.+... ..||++++++.+.+.+++++||+.+ ++||.+|+++.
T Consensus 139 ~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~ 218 (327)
T cd02803 139 IIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSAD 218 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechh
Confidence 246778889999999999999986 6765221 2589999999999999999999988 78999999975
Q ss_pred C--------CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhh
Q 014581 229 I--------TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMK 300 (422)
Q Consensus 229 ~--------~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~ 300 (422)
. .+..++++.+.+.|+|+|.++++....+... . . .++...+..++.++.+++.+
T Consensus 219 ~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~------~---------~--~~~~~~~~~~~~~~~ir~~~- 280 (327)
T cd02803 219 DFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPI------I---------P--PPYVPEGYFLELAEKIKKAV- 280 (327)
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc------c---------C--CCCCCcchhHHHHHHHHHHC-
Confidence 2 2357889999999999999988653211000 0 0 00001133456677787776
Q ss_pred ccCCCCCceEEEecCCCCHHHHHHHHHh-CCCEEEEhhHHHhhhhHHHHHHHH
Q 014581 301 SEFNDKDYSLSGIGGVETGGDAAEFILL-GANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 301 ~~~~~~~ipIIa~GGI~s~~da~~~l~a-GAd~V~vgtall~~Gp~~i~~i~~ 352 (422)
++||+++|||.+++++.+++.. |||+|++||+++.+ |++++++.+
T Consensus 281 ------~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~lad-P~l~~k~~~ 326 (327)
T cd02803 281 ------KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLAD-PDLPNKARE 326 (327)
T ss_pred ------CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhC-ccHHHHHhc
Confidence 7999999999999999999998 79999999999999 999998764
No 38
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.87 E-value=1.4e-19 Score=180.48 Aligned_cols=249 Identities=21% Similarity=0.275 Sum_probs=166.2
Q ss_pred CCCCcceEeCCeecCCCceecCCCCC----CCH--HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCc
Q 014581 43 AEPDLSITVNGLQMPNPFVIGSGPPG----TNY--TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAK 116 (422)
Q Consensus 43 ~~~dL~~~~~Gl~l~nPi~~AAg~~~----~~~--~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~ 116 (422)
..+|++|+++|.++.-||++|+.-.. .++ ...+.+.++|..+++. |.+.
T Consensus 58 ~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lS-t~s~------------------------ 112 (351)
T cd04737 58 ESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSIS-TYSN------------------------ 112 (351)
T ss_pred CCCCCceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEec-CCCC------------------------
Confidence 56799999999999999999952211 233 3345555567665542 1110
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-c---
Q 014581 117 GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-E--- 192 (422)
Q Consensus 117 ~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~--- 192 (422)
.++|+.. + ..++.+...|+-...+.+...++.++++++|+.+|.+.+-+|.... .
T Consensus 113 --------------~s~Eei~----~---~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~ 171 (351)
T cd04737 113 --------------TSLEEIA----K---ASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADI 171 (351)
T ss_pred --------------CCHHHHH----H---hcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHH
Confidence 0122221 1 1123355555532234444455566666666666666554433210 0
Q ss_pred cc-c------------------ccc---c--ccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEE
Q 014581 193 RK-M------------------GAA---V--GQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVS 248 (422)
Q Consensus 193 ~~-~------------------G~~---l--~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~ 248 (422)
++ + +.. . ..++...++.++++++.+++||++|.. ...+.|+.+.++|+|+|+
T Consensus 172 r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv----~~~~dA~~a~~~G~d~I~ 247 (351)
T cd04737 172 RNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGI----QSPEDADVAINAGADGIW 247 (351)
T ss_pred HhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecC----CCHHHHHHHHHcCCCEEE
Confidence 00 0 000 0 012334567888999999999999943 235789999999999999
Q ss_pred EecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHh
Q 014581 249 AINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL 328 (422)
Q Consensus 249 v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~a 328 (422)
++|+.+. .+| + + |.+++.+.++++++.+ ++|||++|||+++.|+.|+|++
T Consensus 248 vsnhGGr--~ld----------------~---~----~~~~~~l~~i~~a~~~-----~i~vi~dGGIr~g~Di~kaLal 297 (351)
T cd04737 248 VSNHGGR--QLD----------------G---G----PASFDSLPEIAEAVNH-----RVPIIFDSGVRRGEHVFKALAS 297 (351)
T ss_pred EeCCCCc--cCC----------------C---C----chHHHHHHHHHHHhCC-----CCeEEEECCCCCHHHHHHHHHc
Confidence 9997532 111 1 1 4456788889888743 6999999999999999999999
Q ss_pred CCCEEEEhhHHHhhhh---------HHHHHHHHHHHHHHHHcCCCCHHHhhcC
Q 014581 329 GANTVQVCTGVMMHGY---------GLVKRLCEELKDFMKMHNFSSIEDFRGA 372 (422)
Q Consensus 329 GAd~V~vgtall~~Gp---------~~i~~i~~~l~~~m~~~G~~si~d~~G~ 372 (422)
||++|++||++++. . .+++.+.+||+.+|...|+.+++|+.+.
T Consensus 298 GA~~V~iGr~~l~~-la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 349 (351)
T cd04737 298 GADAVAVGRPVLYG-LALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRT 349 (351)
T ss_pred CCCEEEECHHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCC
Confidence 99999999999874 3 5789999999999999999999999753
No 39
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.86 E-value=5.9e-20 Score=183.70 Aligned_cols=252 Identities=16% Similarity=0.183 Sum_probs=171.9
Q ss_pred ceEeCCeecCCCceecCCCCCC------CH---HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccc
Q 014581 48 SITVNGLQMPNPFVIGSGPPGT------NY---TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQ 118 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~~------~~---~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~ 118 (422)
+.++.+++++|.|+.++..... +. +.+++.++.|+|.|+++.+..++. +...|+.
T Consensus 4 P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~--~~~~~~~-------------- 67 (336)
T cd02932 4 PLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPE--GRITPGD-------------- 67 (336)
T ss_pred CeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCC--cCCCCCc--------------
Confidence 5688999999999999864211 22 334445557999999998877541 2111111
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC----------------------------------------
Q 014581 119 IIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME---------------------------------------- 158 (422)
Q Consensus 119 ~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~---------------------------------------- 158 (422)
++++++.-++.|.+....+++. +..+++|+.-
T Consensus 68 ------~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~ 139 (336)
T cd02932 68 ------LGLWNDEQIEALKRIVDFIHSQ--GAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWP 139 (336)
T ss_pred ------eeecCHHHHHHHHHHHHHHHhc--CCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCC
Confidence 1122222234443333333332 4455555410
Q ss_pred ---CCC-------HHHHHHHHHHHHHhCCCEEEEccCC---------CCCCCc-cccccccccChhHHHHHHHHHhhcc-
Q 014581 159 ---EYN-------KAAWEELIDRVEETGIDAIEVNFSC---------PHGMPE-RKMGAAVGQDCRLLEEVCGWINAKA- 217 (422)
Q Consensus 159 ---~~~-------~~~~~~~a~~~~~aGaD~iElN~sc---------P~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~- 217 (422)
..+ .++|.+.|+++.++|+|+||||.+| |.+... ..||++++++++.+.+++++||+.+
T Consensus 140 ~p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 140 TPRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 011 2456778888889999999999865 654222 2589999999999999999999998
Q ss_pred -CccEEEEECCC--------CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 218 -TVPVWAKMTPN--------ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 218 -~iPv~vKl~~~--------~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
+.||.+|+++. ..+..++++.+.+.|+|.|.++...... ....+. + ...-
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~-----~~~~~~-------------~---~~~~ 278 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSP-----AQKIPV-------------G---PGYQ 278 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCc-----ccccCC-------------C---cccc
Confidence 78999999963 1235678889999999999887532110 000000 0 0112
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~ 352 (422)
+...+++++.+ ++||+++|||.+++++.+++..| ||+|++||+++.+ |+++.++.+
T Consensus 279 ~~~~~~ir~~~-------~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~d-P~~~~k~~~ 335 (336)
T cd02932 279 VPFAERIRQEA-------GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRN-PYWPLHAAA 335 (336)
T ss_pred HHHHHHHHhhC-------CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhC-ccHHHHHhh
Confidence 34556677765 79999999999999999999988 9999999999999 999988765
No 40
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.85 E-value=1.2e-19 Score=181.69 Aligned_cols=260 Identities=15% Similarity=0.166 Sum_probs=176.5
Q ss_pred ceEeCCeecCCCceecCCCCCC------CH---HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccc
Q 014581 48 SITVNGLQMPNPFVIGSGPPGT------NY---TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQ 118 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~~------~~---~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~ 118 (422)
+.++.+++++|.|+.|++.... +. +.+.+.++.|+|.|+++.+...+. +...|
T Consensus 4 P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~--~~~~~---------------- 65 (343)
T cd04734 4 PLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPS--DSPAF---------------- 65 (343)
T ss_pred CeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCc--ccCCC----------------
Confidence 4678899999999999863211 22 334555567999999998776441 11111
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC------------------------------CCC-------
Q 014581 119 IIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME------------------------------EYN------- 161 (422)
Q Consensus 119 ~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~------------------------------~~~------- 161 (422)
..++++++.-++.|.+....+++. +..+++||.- ..+
T Consensus 66 ----~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~i 139 (343)
T cd04734 66 ----GNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEI 139 (343)
T ss_pred ----CccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 112334433355555555555553 5678888741 011
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccC---------CCCCCCc-cccccccccChhHHHHHHHHHhhcc--CccEEEEECCCC
Q 014581 162 KAAWEELIDRVEETGIDAIEVNFS---------CPHGMPE-RKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPNI 229 (422)
Q Consensus 162 ~~~~~~~a~~~~~aGaD~iElN~s---------cP~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~~ 229 (422)
.++|.++|++++++|+|+||||.. ||.+... ..||++++++.+.+.+|+++||+.+ +.||.+|++++-
T Consensus 140 i~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~ 219 (343)
T cd04734 140 IAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE 219 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh
Confidence 246778888999999999999983 6765322 2589999999999999999999987 467788887632
Q ss_pred --------CChHHHHHHHHHcC-CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhh
Q 014581 230 --------TDITEPARVALRSG-SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMK 300 (422)
Q Consensus 230 --------~~~~~~a~~l~~aG-adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~ 300 (422)
++..++++.++++| +|.|.++....... . ......+ ..+.++ ..-++.++.+++.+
T Consensus 220 ~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~-~--~~~~~~~--------~~~~~~---~~~~~~~~~ik~~~- 284 (343)
T cd04734 220 DTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTL-L--GLAHVVP--------SMGMPP---GPFLPLAARIKQAV- 284 (343)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcc-c--ccccccC--------CCCCCc---chhHHHHHHHHHHc-
Confidence 23568899999998 89999975432110 0 0000000 001111 11245566777765
Q ss_pred ccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 301 SEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 301 ~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
++|||++|||.+++++.+++..| ||+|++||+++.+ |++++++.++
T Consensus 285 ------~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~lad-P~l~~k~~~g 331 (343)
T cd04734 285 ------DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIAD-PHLVAKAREG 331 (343)
T ss_pred ------CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhC-ccHHHHHHcC
Confidence 79999999999999999999865 9999999999999 9999888654
No 41
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.84 E-value=1.8e-19 Score=180.39 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=174.6
Q ss_pred ceEeC-CeecCCCceecCCCCC---C----CHHH---HHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCc
Q 014581 48 SITVN-GLQMPNPFVIGSGPPG---T----NYTV---MKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAK 116 (422)
Q Consensus 48 ~~~~~-Gl~l~nPi~~AAg~~~---~----~~~~---~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~ 116 (422)
+.++. |++|+|.|+.++.... . +.+. ..+.++.|+|.|+++.+..++. +...| .
T Consensus 4 P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~--~~~~~------~------- 68 (338)
T cd04733 4 PLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPR--HLEEP------G------- 68 (338)
T ss_pred CeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcc--cccCC------C-------
Confidence 56788 5999999999976321 1 2233 3333446999999998776431 11111 0
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC---------------------------------CCC--
Q 014581 117 GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME---------------------------------EYN-- 161 (422)
Q Consensus 117 ~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~---------------------------------~~~-- 161 (422)
+....+++++.-++.|.+....+++. +..+++|+.- ..+
T Consensus 69 ----~~~~~~~~~d~~i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~ 142 (338)
T cd04733 69 ----IIGNVVLESGEDLEAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEE 142 (338)
T ss_pred ----cCCCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHH
Confidence 00112233333344554444444442 4556666431 001
Q ss_pred -----HHHHHHHHHHHHHhCCCEEEEccCC---------CCCCCcc--ccccccccChhHHHHHHHHHhhcc--CccEEE
Q 014581 162 -----KAAWEELIDRVEETGIDAIEVNFSC---------PHGMPER--KMGAAVGQDCRLLEEVCGWINAKA--TVPVWA 223 (422)
Q Consensus 162 -----~~~~~~~a~~~~~aGaD~iElN~sc---------P~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~v 223 (422)
.++|.+.|++++++|+|+||||.+| |.+. .| .||++++++++.+.+++++||+++ +.||.+
T Consensus 143 eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N-~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~v 221 (338)
T cd04733 143 EIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTN-KRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGI 221 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCC-CCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2467788999999999999999875 7753 33 589999999999999999999988 589999
Q ss_pred EECCC------C--CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHH
Q 014581 224 KMTPN------I--TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSI 295 (422)
Q Consensus 224 Kl~~~------~--~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i 295 (422)
|+++. + ++..++++.+.+.|+|.|.++.+....+. . ...+.. ....+ ...-+...+++
T Consensus 222 ris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~-~--~~~~~~---------~~~~~--~~~~~~~~~~i 287 (338)
T cd04733 222 KLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPA-M--AGAKKE---------STIAR--EAYFLEFAEKI 287 (338)
T ss_pred EEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCcc-c--cccccC---------Ccccc--chhhHHHHHHH
Confidence 99842 2 23568899999999999999876532100 0 000000 00000 01123555677
Q ss_pred HHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHH
Q 014581 296 AKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 296 ~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~ 352 (422)
++.+ ++||+++|+|.+++++.+++..| ||+|++||+++.+ |++++++++
T Consensus 288 k~~v-------~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iad-P~~~~k~~~ 337 (338)
T cd04733 288 RKVT-------KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALE-PDLPNKLLA 337 (338)
T ss_pred HHHc-------CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhC-ccHHHHHhc
Confidence 7776 89999999999999999999986 9999999999999 999998865
No 42
>PLN02535 glycolate oxidase
Probab=99.84 E-value=1.4e-18 Score=173.61 Aligned_cols=251 Identities=20% Similarity=0.260 Sum_probs=176.1
Q ss_pred CCCCCcceEeCCeecCCCceecC-CCC---CCCH--HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCC
Q 014581 42 SAEPDLSITVNGLQMPNPFVIGS-GPP---GTNY--TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSA 115 (422)
Q Consensus 42 ~~~~dL~~~~~Gl~l~nPi~~AA-g~~---~~~~--~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a 115 (422)
...+|++|+++|.++..||++|+ |.. -.++ ...+.+.++|.-+++ -|.+
T Consensus 57 v~~~d~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~l-St~s------------------------ 111 (364)
T PLN02535 57 VSKIDMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVL-SFMA------------------------ 111 (364)
T ss_pred CCCCCCceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEe-cCcc------------------------
Confidence 36789999999999999999995 211 1223 334445556655443 1111
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-c--
Q 014581 116 KGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-E-- 192 (422)
Q Consensus 116 ~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~-- 192 (422)
..++|++. +. ++.+...|+-...+.+...++.++++++|+.+|.+.+-+|.... +
T Consensus 112 --------------~~slEeva-------~~-~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d 169 (364)
T PLN02535 112 --------------SCTVEEVA-------SS-CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREAD 169 (364)
T ss_pred --------------cCCHHHHH-------hc-CCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhh
Confidence 11134332 11 24577888753345666677888888889888888776655310 0
Q ss_pred -cc-c------------------------cccc--ccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCC
Q 014581 193 -RK-M------------------------GAAV--GQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGS 244 (422)
Q Consensus 193 -~~-~------------------------G~~l--~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGa 244 (422)
|+ + +..+ ..++...++-++++++.++.||+||-..+ .+.++.+.++|+
T Consensus 170 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~----~~dA~~a~~~Gv 245 (364)
T PLN02535 170 IKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLT----REDAIKAVEVGV 245 (364)
T ss_pred hhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCC----HHHHHHHHhcCC
Confidence 10 0 0000 01344566888999999999999995422 356899999999
Q ss_pred CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHH
Q 014581 245 EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAE 324 (422)
Q Consensus 245 dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~ 324 (422)
|+|+++|+... .+| . .|.++..+.++++.+.. ++|||+.|||.++.|+.|
T Consensus 246 D~I~vsn~GGr--~~d------------------~-----~~~t~~~L~ev~~av~~-----~ipVi~dGGIr~g~Dv~K 295 (364)
T PLN02535 246 AGIIVSNHGAR--QLD------------------Y-----SPATISVLEEVVQAVGG-----RVPVLLDGGVRRGTDVFK 295 (364)
T ss_pred CEEEEeCCCcC--CCC------------------C-----ChHHHHHHHHHHHHHhc-----CCCEEeeCCCCCHHHHHH
Confidence 99999997632 111 1 14567888888887643 699999999999999999
Q ss_pred HHHhCCCEEEEhhHHHhhhhH---------HHHHHHHHHHHHHHHcCCCCHHHhhcCCc
Q 014581 325 FILLGANTVQVCTGVMMHGYG---------LVKRLCEELKDFMKMHNFSSIEDFRGASI 374 (422)
Q Consensus 325 ~l~aGAd~V~vgtall~~Gp~---------~i~~i~~~l~~~m~~~G~~si~d~~G~~~ 374 (422)
+|.+||++|++|+++++. +. .++.+.++|+..|...|..+++|+.+..+
T Consensus 296 ALalGA~aV~vGr~~l~~-l~~~g~~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l 353 (364)
T PLN02535 296 ALALGAQAVLVGRPVIYG-LAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHV 353 (364)
T ss_pred HHHcCCCEEEECHHHHhh-hhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhc
Confidence 999999999999999974 32 68889999999999999999999987433
No 43
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.84 E-value=4.7e-19 Score=179.82 Aligned_cols=260 Identities=15% Similarity=0.193 Sum_probs=171.9
Q ss_pred ceEeCCeecCCCceecCCCC----CC----CHH---HHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCc
Q 014581 48 SITVNGLQMPNPFVIGSGPP----GT----NYT---VMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAK 116 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~----~~----~~~---~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~ 116 (422)
+.++.+++|+|.|+.|+... +. +.+ .+++.++.|+|.|+++.....+.-.+...+
T Consensus 4 P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~-------------- 69 (382)
T cd02931 4 PIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMP-------------- 69 (382)
T ss_pred CeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCC--------------
Confidence 46788999999999997631 11 222 234445569999999987664410000000
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC--C-------------------------------CC--
Q 014581 117 GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME--E-------------------------------YN-- 161 (422)
Q Consensus 117 ~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~--~-------------------------------~~-- 161 (422)
+. ....+..+.-++.|.+....+++. +..+++|+.. + .+
T Consensus 70 -~~---~~~~~~~~~~i~~~k~l~davh~~--G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~ 143 (382)
T cd02931 70 -SL---PCPTYNPTAFIRTAKEMTERVHAY--GTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTE 143 (382)
T ss_pred -Cc---cccccCCHHHhHHHHHHHHHHHHc--CCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHH
Confidence 00 000111111134444444444442 5677788731 1 01
Q ss_pred -----HHHHHHHHHHHHHhCCCEEEEcc---CC-------CCCCCcc--ccccccccChhHHHHHHHHHhhcc--CccEE
Q 014581 162 -----KAAWEELIDRVEETGIDAIEVNF---SC-------PHGMPER--KMGAAVGQDCRLLEEVCGWINAKA--TVPVW 222 (422)
Q Consensus 162 -----~~~~~~~a~~~~~aGaD~iElN~---sc-------P~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~ 222 (422)
.++|.+.|++++++|+|+||||. +| |.+ +.| .||++++++.+.+.+|+++||+.+ +.||.
T Consensus 144 eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~-N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~ 222 (382)
T cd02931 144 EVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLF-NKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVS 222 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEE
Confidence 14567788999999999999997 43 444 233 589999999999999999999988 67999
Q ss_pred EEECCC----------------------CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCC
Q 014581 223 AKMTPN----------------------ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYS 280 (422)
Q Consensus 223 vKl~~~----------------------~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~s 280 (422)
+|++++ .++..++++.+.++|+|.|.++.+....+.. . .+ ..+.
T Consensus 223 vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~---~-~~----------~~~~ 288 (382)
T cd02931 223 LRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYW---N-HP----------PMYQ 288 (382)
T ss_pred EEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccccc---c-cC----------CccC
Confidence 999962 1234678899999999999998764321000 0 00 0000
Q ss_pred CCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 281 G~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
++ ..-+..++.+++.+ ++|||++|||.+++++.+++..| ||+|++||+++.+ |++++++.++
T Consensus 289 ~~---~~~~~~~~~ik~~~-------~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g 351 (382)
T cd02931 289 KK---GMYLPYCKALKEVV-------DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLAD-PDVVNKIRRG 351 (382)
T ss_pred Cc---chhHHHHHHHHHHC-------CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhC-ccHHHHHHcC
Confidence 00 01134556677765 79999999999999999999976 9999999999999 9999987653
No 44
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.83 E-value=4.7e-19 Score=178.32 Aligned_cols=256 Identities=13% Similarity=0.111 Sum_probs=174.5
Q ss_pred ceEeCCeecCCCceecCCCCCC------CHH---HHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccc
Q 014581 48 SITVNGLQMPNPFVIGSGPPGT------NYT---VMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQ 118 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~~------~~~---~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~ 118 (422)
+.++.+++++|.|+.++..... +.+ ...+.++.|+|.|+++.+..++. +...|+
T Consensus 4 P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~--~~~~~~--------------- 66 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEA--GKLGPG--------------- 66 (353)
T ss_pred CeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCc--ccCCCC---------------
Confidence 4678999999999999764211 222 23444456999999998776431 111111
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC--------------------------CCC-------HHHH
Q 014581 119 IIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME--------------------------EYN-------KAAW 165 (422)
Q Consensus 119 ~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~--------------------------~~~-------~~~~ 165 (422)
.++++++.-++.|.+....+++. +..+++|+.. ..+ .++|
T Consensus 67 -----~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f 139 (353)
T cd02930 67 -----GPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDF 139 (353)
T ss_pred -----CcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 12233333355555544455542 6788888731 011 2456
Q ss_pred HHHHHHHHHhCCCEEEEcc---------CCCCCCCc-cccccccccChhHHHHHHHHHhhcc--CccEEEEECCCC----
Q 014581 166 EELIDRVEETGIDAIEVNF---------SCPHGMPE-RKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPNI---- 229 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~---------scP~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~~---- 229 (422)
.+.|+++.++|+|+|||+. .||.+... ..||++++++.+.+.+++++||+.+ +.||.+|+++.-
T Consensus 140 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~ 219 (353)
T cd02930 140 ARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG 219 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC
Confidence 7788888899999999985 38876322 2589999999999999999999987 578899998531
Q ss_pred ----CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCC
Q 014581 230 ----TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFND 305 (422)
Q Consensus 230 ----~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~ 305 (422)
.+..++++.++++|+|.|.++..+... +.+. .....++ ..-+...+++++.+
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~---------~~~~------~~~~~~~---~~~~~~~~~ik~~v------ 275 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTGIGWHEA---------RVPT------IATSVPR---GAFAWATAKLKRAV------ 275 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC---------CCcc------ccccCCc---hhhHHHHHHHHHhC------
Confidence 125688899999999999986543210 0000 0001111 01134455677765
Q ss_pred CCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 306 KDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 306 ~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
++||+++|++.+++++.+++..| +|+|++||+++.+ |++++++.++
T Consensus 276 -~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~d-P~~~~k~~~g 322 (353)
T cd02930 276 -DIPVIASNRINTPEVAERLLADGDADMVSMARPFLAD-PDFVAKAAAG 322 (353)
T ss_pred -CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHC-ccHHHHHHhC
Confidence 89999999999999999999976 9999999999999 9999887653
No 45
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.83 E-value=1.6e-18 Score=173.48 Aligned_cols=254 Identities=17% Similarity=0.243 Sum_probs=176.4
Q ss_pred ceEeCCeecCCCceecCCCCCC-------C---HHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcc
Q 014581 48 SITVNGLQMPNPFVIGSGPPGT-------N---YTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~~-------~---~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~ 117 (422)
+.++.+++|+|.|+.|++.-.. + .+...+-++.|+|.+++.+...++ .+... .
T Consensus 9 P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~--~g~~~---------------~ 71 (363)
T COG1902 9 PLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDP--GGRGY---------------P 71 (363)
T ss_pred CeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCc--ccccC---------------C
Confidence 4678899999999998644321 1 133344444679988888655433 11111 1
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC-C-------------------------------CC----
Q 014581 118 QIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME-E-------------------------------YN---- 161 (422)
Q Consensus 118 ~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~-~-------------------------------~~---- 161 (422)
..++++++..++.|.+....+++. +..+++||.- | .+
T Consensus 72 -----~~~~l~~d~~i~~~~~vt~avH~~--G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI 144 (363)
T COG1902 72 -----GQPGLWSDAQIPGLKRLTEAVHAH--GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEI 144 (363)
T ss_pred -----CCCccCChhHhHHHHHHHHHHHhc--CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHH
Confidence 122444444466666655566553 5577777741 1 01
Q ss_pred ---HHHHHHHHHHHHHhCCCEEEEc---------cCCCCCCCcc--ccccccccChhHHHHHHHHHhhcc--CccEEEEE
Q 014581 162 ---KAAWEELIDRVEETGIDAIEVN---------FSCPHGMPER--KMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKM 225 (422)
Q Consensus 162 ---~~~~~~~a~~~~~aGaD~iElN---------~scP~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl 225 (422)
.++|.++|++++++|+|+|||+ |.+|.+ +.| .||++++++..++.||+++||+++ +.||.+||
T Consensus 145 ~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~t-N~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rl 223 (363)
T COG1902 145 EEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLT-NKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRL 223 (363)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCcc-CCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 1467788999999999999997 457776 344 599999999999999999999998 56999999
Q ss_pred CCCCC---------ChHHHHHHHHHcC-CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHH
Q 014581 226 TPNIT---------DITEPARVALRSG-SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSI 295 (422)
Q Consensus 226 ~~~~~---------~~~~~a~~l~~aG-adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i 295 (422)
+++-. +..++++.+.+.| +|.|.++...... . .+. ...+ .|. -+.....+
T Consensus 224 s~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~-----~--~~~-------~~~~-~~~-----~~~~a~~i 283 (363)
T COG1902 224 SPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYER-----G--GTI-------TVSG-PGY-----QVEFAARI 283 (363)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccC-----C--CCc-------cccc-cch-----hHHHHHHH
Confidence 98432 3578999999999 7999988743210 0 000 0010 111 12223345
Q ss_pred HHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 296 AKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 296 ~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~l 354 (422)
+... .+|+|++|+|.+++++.+.+..| ||+|.+||+++.+ |+++.++.++.
T Consensus 284 ~~~~-------~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad-P~~~~k~~~g~ 335 (363)
T COG1902 284 KKAV-------RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD-PDLVLKAAEGR 335 (363)
T ss_pred HHhc-------CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC-ccHHHHHHcCC
Confidence 5544 79999999999999999999998 9999999999999 99999988764
No 46
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.82 E-value=2.2e-18 Score=172.09 Aligned_cols=155 Identities=18% Similarity=0.210 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEccCC---------CCCCCcc--ccccccccChhHHHHHHHHHhhccCc-cEEEEECCCC-
Q 014581 163 AAWEELIDRVEETGIDAIEVNFSC---------PHGMPER--KMGAAVGQDCRLLEEVCGWINAKATV-PVWAKMTPNI- 229 (422)
Q Consensus 163 ~~~~~~a~~~~~aGaD~iElN~sc---------P~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~~i-Pv~vKl~~~~- 229 (422)
++|.+.|++++++|+|+||||.+| |.+ +.| .||++++++.+.+.+|+++||+.+.. ||.+|+++.-
T Consensus 152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~-N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~ 230 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGS-NKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGT 230 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCcc-CCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECcccc
Confidence 456778899999999999999887 765 333 58899999999999999999998744 8999998641
Q ss_pred ----------CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHh
Q 014581 230 ----------TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMM 299 (422)
Q Consensus 230 ----------~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~ 299 (422)
.+..++++.+.+.|+|.|.++...... ... ..-+..++++++.+
T Consensus 231 ~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~------------------~~~--------~~~~~~~~~ik~~~ 284 (338)
T cd02933 231 FNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAG------------------NPE--------DQPPDFLDFLRKAF 284 (338)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCC------------------ccc--------ccchHHHHHHHHHc
Confidence 124688999999999999986432110 001 11235566778776
Q ss_pred hccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 300 KSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 300 ~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
++|||++|||. ++++.+++..| ||+|++||+++.+ |++++++.++
T Consensus 285 -------~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~lad-P~~~~k~~~g 330 (338)
T cd02933 285 -------KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIAN-PDLVERLKNG 330 (338)
T ss_pred -------CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhC-cCHHHHHhcC
Confidence 79999999997 99999999976 9999999999999 9999998754
No 47
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.82 E-value=5.1e-18 Score=169.48 Aligned_cols=253 Identities=20% Similarity=0.270 Sum_probs=175.3
Q ss_pred CCCCCcceEeCCeecCCCceecCCCC----CCC--HHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCC
Q 014581 42 SAEPDLSITVNGLQMPNPFVIGSGPP----GTN--YTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSA 115 (422)
Q Consensus 42 ~~~~dL~~~~~Gl~l~nPi~~AAg~~----~~~--~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a 115 (422)
...+|++|+++|.++..||++|+.-. ..+ ....+.+.++|..+++ -|.+
T Consensus 65 v~~~d~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~l-St~s------------------------ 119 (367)
T TIGR02708 65 VENPSTEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTT-SSYS------------------------ 119 (367)
T ss_pred CCCCCCceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeee-cccc------------------------
Confidence 35789999999999999999995221 122 3345555566666543 1111
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-c--
Q 014581 116 KGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-E-- 192 (422)
Q Consensus 116 ~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~-- 192 (422)
+ .++|++ . +..++.|...|+-...+.+-..++.++++++|+.+|-+.+-+|.... +
T Consensus 120 --------s------~slEev----~---~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d 178 (367)
T TIGR02708 120 --------T------ADLPEI----S---EALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVD 178 (367)
T ss_pred --------c------CCHHHH----H---hhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhh
Confidence 0 013332 1 11134577777753345555577888888889999888776663210 0
Q ss_pred -cc------------------ccccc-----ccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEE
Q 014581 193 -RK------------------MGAAV-----GQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVS 248 (422)
Q Consensus 193 -~~------------------~G~~l-----~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~ 248 (422)
|+ .+... ..++...++.++++++.+++||+||-.. ..+.|+.+.++|+|+|.
T Consensus 179 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~----~~eda~~a~~~Gvd~I~ 254 (367)
T TIGR02708 179 VRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQ----CPEDADRALKAGASGIW 254 (367)
T ss_pred hhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCC----CHHHHHHHHHcCcCEEE
Confidence 00 00000 0123345577889999999999999432 26789999999999999
Q ss_pred EecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHh
Q 014581 249 AINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL 328 (422)
Q Consensus 249 v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~a 328 (422)
++|+.+. .+| ++ |.+++.+.++++++.+ ++|||++|||+++.|++|+|++
T Consensus 255 VS~HGGr--q~~-------------------~~----~a~~~~L~ei~~av~~-----~i~vi~dGGIr~g~Dv~KaLal 304 (367)
T TIGR02708 255 VTNHGGR--QLD-------------------GG----PAAFDSLQEVAEAVDK-----RVPIVFDSGVRRGQHVFKALAS 304 (367)
T ss_pred ECCcCcc--CCC-------------------CC----CcHHHHHHHHHHHhCC-----CCcEEeeCCcCCHHHHHHHHHc
Confidence 9998642 111 11 3356778888887743 6999999999999999999999
Q ss_pred CCCEEEEhhHHHhh----hh----HHHHHHHHHHHHHHHHcCCCCHHHhhcCCc
Q 014581 329 GANTVQVCTGVMMH----GY----GLVKRLCEELKDFMKMHNFSSIEDFRGASI 374 (422)
Q Consensus 329 GAd~V~vgtall~~----Gp----~~i~~i~~~l~~~m~~~G~~si~d~~G~~~ 374 (422)
||++|++|+.+++. |. .+++.+.+||+..|...|.++++|+....+
T Consensus 305 GAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l 358 (367)
T TIGR02708 305 GADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDL 358 (367)
T ss_pred CCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCcccc
Confidence 99999999998873 32 357889999999999999999999976544
No 48
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.82 E-value=1e-18 Score=175.80 Aligned_cols=254 Identities=16% Similarity=0.162 Sum_probs=173.3
Q ss_pred ceEeCC-eecCCCceecCCCCCC-------CHHHHHHHHH--cCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcc
Q 014581 48 SITVNG-LQMPNPFVIGSGPPGT-------NYTVMKRAFD--EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117 (422)
Q Consensus 48 ~~~~~G-l~l~nPi~~AAg~~~~-------~~~~~~~~~~--~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~ 117 (422)
+.++.+ ++++|.|+.+++.... +.+.+....+ .|+|.|+++.+...+. +...|+
T Consensus 4 P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~--~~~~~~-------------- 67 (353)
T cd04735 4 PFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPS--GIGFEG-------------- 67 (353)
T ss_pred CEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcc--cCcCCC--------------
Confidence 467787 9999999999863211 2233332222 2699999987776441 111111
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC--------------------------------CCC----
Q 014581 118 QIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME--------------------------------EYN---- 161 (422)
Q Consensus 118 ~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~--------------------------------~~~---- 161 (422)
.++++++.-++.|.+....+++. +..+++|+.. ..+
T Consensus 68 ------~~~~~~d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI 139 (353)
T cd04735 68 ------GFSADDDSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEI 139 (353)
T ss_pred ------CceecChhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHH
Confidence 11233333355665555555542 5566676631 001
Q ss_pred ---HHHHHHHHHHHHHhCCCEEEEcc---------CCCCCCCc-cccccccccChhHHHHHHHHHhhcc------CccEE
Q 014581 162 ---KAAWEELIDRVEETGIDAIEVNF---------SCPHGMPE-RKMGAAVGQDCRLLEEVCGWINAKA------TVPVW 222 (422)
Q Consensus 162 ---~~~~~~~a~~~~~aGaD~iElN~---------scP~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~------~iPv~ 222 (422)
.++|.+.|++++++|+|+||||. .||.++.. ..||++++++.+.+.+|+++||+++ +.||.
T Consensus 140 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~ 219 (353)
T cd04735 140 EDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILG 219 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEE
Confidence 24567788999999999999996 47876321 2589999999999999999999976 46788
Q ss_pred EEECCCC--------CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHH
Q 014581 223 AKMTPNI--------TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMS 294 (422)
Q Consensus 223 vKl~~~~--------~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~ 294 (422)
+|++++- .+..++++.+.++|+|.|.++....... . . .... .....+..
T Consensus 220 ~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~-----~--~---------~~~~-------~~~~~~~~ 276 (353)
T cd04735 220 YRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK-----S--R---------RGRD-------DNQTIMEL 276 (353)
T ss_pred EEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc-----c--c---------cCCc-------chHHHHHH
Confidence 9998742 2456889999999999999986532100 0 0 0000 01234455
Q ss_pred HHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 295 IAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 295 i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
+++.+. .++|||++|||++++++.+++..|||+|++||+++.+ |++++++.++.
T Consensus 277 ik~~~~-----~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liad-Pdl~~k~~~G~ 330 (353)
T cd04735 277 VKERIA-----GRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVD-PDWVEKIKEGR 330 (353)
T ss_pred HHHHhC-----CCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhC-ccHHHHHHcCC
Confidence 666552 1799999999999999999999999999999999999 99999987663
No 49
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.82 E-value=1.2e-18 Score=174.89 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=170.6
Q ss_pred ceEeCCeecCCCceecCCCCC------CCH---HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccc
Q 014581 48 SITVNGLQMPNPFVIGSGPPG------TNY---TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQ 118 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~------~~~---~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~ 118 (422)
+.++.+++++|.|+.++.... .+. +.+++.++.|+|.|+++.+...+. +... + .
T Consensus 4 Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~--~~~~--~------------~- 66 (361)
T cd04747 4 PFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHP--AASG--D------------P- 66 (361)
T ss_pred CeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccc--cccC--C------------C-
Confidence 467889999999999875321 122 334445557999999987766321 1000 0 0
Q ss_pred ccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC-C-------------------------------CC-----
Q 014581 119 IIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME-E-------------------------------YN----- 161 (422)
Q Consensus 119 ~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~-~-------------------------------~~----- 161 (422)
...+++++.-++.|.+....+++. +..+++||.. | .+
T Consensus 67 ----~~~~~~~d~~i~~~~~l~d~vh~~--Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~ 140 (361)
T cd04747 67 ----NVPRFHGEDALAGWKKVVDEVHAA--GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADID 140 (361)
T ss_pred ----CCCccCCHHHHHHHHHHHHHHHhc--CCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHH
Confidence 011233332344444444444442 5567777621 0 01
Q ss_pred --HHHHHHHHHHHHHhCCCEEEEccCC---------CCCCCcc--ccccccccChhHHHHHHHHHhhcc--CccEEEEEC
Q 014581 162 --KAAWEELIDRVEETGIDAIEVNFSC---------PHGMPER--KMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMT 226 (422)
Q Consensus 162 --~~~~~~~a~~~~~aGaD~iElN~sc---------P~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~ 226 (422)
.++|.+.|++++++|+|+||||..| |.++ .| .||++++++.+.+.+|+++||+++ +.||.+|++
T Consensus 141 ~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N-~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis 219 (361)
T cd04747 141 DVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTN-RRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFS 219 (361)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC
Confidence 1366788889999999999999887 7763 33 589999999999999999999987 689999999
Q ss_pred CC----C-----C---ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHH
Q 014581 227 PN----I-----T---DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMS 294 (422)
Q Consensus 227 ~~----~-----~---~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~ 294 (422)
++ . . +..++++.+.+.|+|.|.++..... .|. + .|. .+.....
T Consensus 220 ~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~---------~~~--------~---~~~-----~~~~~~~ 274 (361)
T cd04747 220 QWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFW---------EPE--------F---EGS-----ELNLAGW 274 (361)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCcc---------CCC--------c---Ccc-----chhHHHH
Confidence 62 1 1 2356778889999999877643110 010 0 111 1233445
Q ss_pred HHHHhhccCCCCCceEEEecCC------------------CCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 295 IAKMMKSEFNDKDYSLSGIGGV------------------ETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 295 i~~~~~~~~~~~~ipIIa~GGI------------------~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~l 354 (422)
+++.+ ++||+++||| .+++++.+++..| ||+|++||+++.+ |++++++.++-
T Consensus 275 ~k~~~-------~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iad-P~~~~k~~~g~ 345 (361)
T cd04747 275 TKKLT-------GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD-PAWVAKVREGR 345 (361)
T ss_pred HHHHc-------CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhC-cHHHHHHHcCC
Confidence 66655 7999999999 6999999999966 9999999999999 99999987663
No 50
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.81 E-value=4.7e-18 Score=170.44 Aligned_cols=250 Identities=26% Similarity=0.346 Sum_probs=172.1
Q ss_pred CCCCCcceEeCCeecCCCceecCCCCC----CCH--HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCC
Q 014581 42 SAEPDLSITVNGLQMPNPFVIGSGPPG----TNY--TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSA 115 (422)
Q Consensus 42 ~~~~dL~~~~~Gl~l~nPi~~AAg~~~----~~~--~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a 115 (422)
.+++|++|+|+|.++..||++|+...+ .++ ...+.+.++|..+++ .|.+.
T Consensus 43 v~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~l-ss~s~----------------------- 98 (356)
T PF01070_consen 43 VSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMML-SSQSS----------------------- 98 (356)
T ss_dssp GSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEE-ETTCS-----------------------
T ss_pred cccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceec-cCCcc-----------------------
Confidence 568899999999999999999964322 233 334555556766544 22111
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC-----
Q 014581 116 KGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM----- 190 (422)
Q Consensus 116 ~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~----- 190 (422)
.+.|+. . +.. ..|...|+....+.+...+..++++++|++++.+++.+|...
T Consensus 99 ---------------~~~e~i----a---~~~-~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d 155 (356)
T PF01070_consen 99 ---------------ASLEEI----A---AAS-GGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERD 155 (356)
T ss_dssp ---------------SCHHHH----H---HHC-TSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHH
T ss_pred ---------------CCHHHH----H---hhc-cCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccc
Confidence 012322 1 112 368888885445677778888999999999999986544310
Q ss_pred -------Ccc----cc-------------------------c---ccc---ccChhHHHHHHHHHhhccCccEEEEECCC
Q 014581 191 -------PER----KM-------------------------G---AAV---GQDCRLLEEVCGWINAKATVPVWAKMTPN 228 (422)
Q Consensus 191 -------~~~----~~-------------------------G---~~l---~~~~~~v~~iv~~vr~~~~iPv~vKl~~~ 228 (422)
+.+ .. . ..+ ..++...++-++++++.+++||+||-..
T Consensus 156 ~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~- 234 (356)
T PF01070_consen 156 LRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVL- 234 (356)
T ss_dssp HHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE--
T ss_pred cccccCCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecc-
Confidence 000 00 0 000 0134556677899999999999999872
Q ss_pred CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCc
Q 014581 229 ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDY 308 (422)
Q Consensus 229 ~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~i 308 (422)
..+.++.+.+.|+++|.++|+.+. .+| +| +.+...+.++++++++ ++
T Consensus 235 ---~~~da~~~~~~G~~~i~vs~hGGr--~~d----------------~~-------~~~~~~L~~i~~~~~~-----~~ 281 (356)
T PF01070_consen 235 ---SPEDAKRAVDAGVDGIDVSNHGGR--QLD----------------WG-------PPTIDALPEIRAAVGD-----DI 281 (356)
T ss_dssp ---SHHHHHHHHHTT-SEEEEESGTGT--SST----------------TS--------BHHHHHHHHHHHHTT-----SS
T ss_pred ---cHHHHHHHHhcCCCEEEecCCCcc--cCc----------------cc-------cccccccHHHHhhhcC-----Ce
Confidence 367899999999999999998643 111 22 3456788899998853 79
Q ss_pred eEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh----hh----HHHHHHHHHHHHHHHHcCCCCHHHhhcC
Q 014581 309 SLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----GY----GLVKRLCEELKDFMKMHNFSSIEDFRGA 372 (422)
Q Consensus 309 pIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----Gp----~~i~~i~~~l~~~m~~~G~~si~d~~G~ 372 (422)
|||++|||+++.|+.|++.+||++|.+++.+++. |. .+++.+.++|+..|...|..+++|+...
T Consensus 282 ~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~ 353 (356)
T PF01070_consen 282 PIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGARSIAELRRS 353 (356)
T ss_dssp EEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGG
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHH
Confidence 9999999999999999999999999999998872 33 2478889999999999999999999753
No 51
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.80 E-value=7e-18 Score=170.57 Aligned_cols=254 Identities=14% Similarity=0.168 Sum_probs=169.3
Q ss_pred ceEeCCeecCCCceecCCCCCC---CHHHH----HHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccc
Q 014581 48 SITVNGLQMPNPFVIGSGPPGT---NYTVM----KRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQII 120 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~~---~~~~~----~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~ 120 (422)
+.++.+++|+|.|+.++..... +...+ .+.++.|+|.|+++.+...+. +...|+
T Consensus 11 P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~--~~~~~~----------------- 71 (370)
T cd02929 11 PIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPS--SDDTPR----------------- 71 (370)
T ss_pred CccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccc--cccCcc-----------------
Confidence 4567899999999999854221 12222 223446899999998776431 111111
Q ss_pred ccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC---------------------------------CCC------
Q 014581 121 GWENIELISDRPLETMLKEFKQLKALYPDKILIASIME---------------------------------EYN------ 161 (422)
Q Consensus 121 Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~---------------------------------~~~------ 161 (422)
..++++++..++.|.+....+++. +..+++|+.. ..+
T Consensus 72 --~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ 147 (370)
T cd02929 72 --ISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKR 147 (370)
T ss_pred --cCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHH
Confidence 012334433355555544445442 5567777621 011
Q ss_pred -HHHHHHHHHHHHHhCCCEEEEccCC---------CCCCCcc--ccccccccChhHHHHHHHHHhhcc--CccEEEEECC
Q 014581 162 -KAAWEELIDRVEETGIDAIEVNFSC---------PHGMPER--KMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTP 227 (422)
Q Consensus 162 -~~~~~~~a~~~~~aGaD~iElN~sc---------P~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~ 227 (422)
.++|.+.|++++++|+|+||||..| |.+ +.| .||++++++.+.+.+|+++||+.+ +.||.+|+++
T Consensus 148 ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~-N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~ 226 (370)
T cd02929 148 VRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRY-NKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSV 226 (370)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccc-cCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecH
Confidence 2466778889999999999999887 665 333 589999999999999999999987 5789999986
Q ss_pred CC----------CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 228 NI----------TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 228 ~~----------~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
+- ++..++++.+.+. +|.+.++...... . ...+. + ...++ .+..+.++++
T Consensus 227 ~~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~---~--~~~~~-----~-~~~~~--------~~~~~~~ik~ 286 (370)
T cd02929 227 DELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWAN---D--GEDSR-----F-YPEGH--------QEPYIKFVKQ 286 (370)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccc---c--ccccc-----c-CCccc--------cHHHHHHHHH
Confidence 31 1234677777665 7888776532210 0 00000 0 01121 1345566777
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
.+ ++|||++|||.+++++.+++..| ||+|++||+++.+ |+++++++++
T Consensus 287 ~~-------~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g 335 (370)
T cd02929 287 VT-------SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIAD-PFLPKKIREG 335 (370)
T ss_pred HC-------CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhC-chHHHHHHcC
Confidence 65 79999999999999999999977 9999999999999 9999987653
No 52
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.80 E-value=2.8e-17 Score=161.32 Aligned_cols=212 Identities=17% Similarity=0.148 Sum_probs=144.9
Q ss_pred CCCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccc
Q 014581 41 ASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQII 120 (422)
Q Consensus 41 ~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~ 120 (422)
..+++||++++.|++|..||+++|+....|.++.+.+.+.|.=.+..|
T Consensus 18 s~~dVdlst~~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-------------------------------- 65 (321)
T TIGR01306 18 SRSECDTSVTLGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR-------------------------------- 65 (321)
T ss_pred CHHHceeeEEECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEec--------------------------------
Confidence 357789999999999999999999865455666666655533222212
Q ss_pred ccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEccCCCCCCCccccccc
Q 014581 121 GWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG--IDAIEVNFSCPHGMPERKMGAA 198 (422)
Q Consensus 121 Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aG--aD~iElN~scP~~~~~~~~G~~ 198 (422)
.++|+|.+.+++.+.. ..++++++ +.+++++.++.+.+ ++| +|+|.++.+.-|+
T Consensus 66 ----------~~~E~~~sfvrk~k~~--~L~v~~Sv--G~t~e~~~r~~~lv-~a~~~~d~i~~D~ahg~s--------- 121 (321)
T TIGR01306 66 ----------FDEESRIPFIKDMQER--GLFASISV--GVKACEYEFVTQLA-EEALTPEYITIDIAHGHS--------- 121 (321)
T ss_pred ----------CCHHHHHHHHHhcccc--ccEEEEEc--CCCHHHHHHHHHHH-hcCCCCCEEEEeCccCch---------
Confidence 1156666655555432 34566666 56788777666655 557 7999998753332
Q ss_pred cccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCC
Q 014581 199 VGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGG 278 (422)
Q Consensus 199 l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG 278 (422)
+.+.+.++++|+.++.|.++| +++ ...+.|+.+.++|+|+|.+.+..+..--..+++ .-|
T Consensus 122 -----~~~~~~i~~i~~~~p~~~vi~--GnV-~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~------------g~g 181 (321)
T TIGR01306 122 -----NSVINMIKHIKTHLPDSFVIA--GNV-GTPEAVRELENAGADATKVGIGPGKVCITKIKT------------GFG 181 (321)
T ss_pred -----HHHHHHHHHHHHhCCCCEEEE--ecC-CCHHHHHHHHHcCcCEEEECCCCCccccceeee------------ccC
Confidence 457778888988777775554 333 257889999999999999886433210001110 011
Q ss_pred CCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 279 ~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
..+ ..+..|.+++++. ++|||++|||+++.|+.|+|++|||+||+|+.+-
T Consensus 182 ~~~-----~~l~ai~ev~~a~-------~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~a 231 (321)
T TIGR01306 182 TGG-----WQLAALRWCAKAA-------RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFA 231 (321)
T ss_pred CCc-----hHHHHHHHHHHhc-------CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhc
Confidence 111 1246778888765 7999999999999999999999999999998873
No 53
>PLN02979 glycolate oxidase
Probab=99.80 E-value=3.1e-17 Score=162.50 Aligned_cols=249 Identities=19% Similarity=0.279 Sum_probs=174.4
Q ss_pred CCCCCcceEeCCeecCCCceecC----CCCCCCH--HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCC
Q 014581 42 SAEPDLSITVNGLQMPNPFVIGS----GPPGTNY--TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSA 115 (422)
Q Consensus 42 ~~~~dL~~~~~Gl~l~nPi~~AA----g~~~~~~--~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a 115 (422)
...+|++|+++|.++..||++|+ +..-.++ ...+.+.++|.-+++ .|.+.
T Consensus 54 v~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~l-St~ss----------------------- 109 (366)
T PLN02979 54 VSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTL-SSWAT----------------------- 109 (366)
T ss_pred CCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeee-ccCcC-----------------------
Confidence 46789999999999999999995 2111233 445666667766543 12111
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCc---
Q 014581 116 KGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPE--- 192 (422)
Q Consensus 116 ~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~--- 192 (422)
.++|++ .+. .+.+...|+-...+.+...++.++++++|+.+|.+.+-+|.....
T Consensus 110 ---------------~slEeI----a~a----~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd 166 (366)
T PLN02979 110 ---------------SSVEEV----AST----GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESD 166 (366)
T ss_pred ---------------CCHHHH----Hhc----cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhh
Confidence 113332 111 134677777433456666777888888888888887655543100
Q ss_pred -c------------cc----------------cccc--ccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHH
Q 014581 193 -R------------KM----------------GAAV--GQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALR 241 (422)
Q Consensus 193 -~------------~~----------------G~~l--~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~ 241 (422)
+ .+ +..+ ..++...++-++|+|+.+++||+||... ..+.|+.+.+
T Consensus 167 ~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~----~~~dA~~a~~ 242 (366)
T PLN02979 167 IKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL----TGEDARIAIQ 242 (366)
T ss_pred hccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC----CHHHHHHHHh
Confidence 0 00 0000 1134455678999999999999999764 2678999999
Q ss_pred cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHH
Q 014581 242 SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGD 321 (422)
Q Consensus 242 aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~d 321 (422)
+|+|+|+++|+... ..| + -|.++..+.++++.+.+ ++|||++|||+++.|
T Consensus 243 ~Gvd~I~VsnhGGr--qld-----------------~------~p~t~~~L~ei~~~~~~-----~~~Vi~dGGIr~G~D 292 (366)
T PLN02979 243 AGAAGIIVSNHGAR--QLD-----------------Y------VPATISALEEVVKATQG-----RIPVFLDGGVRRGTD 292 (366)
T ss_pred cCCCEEEECCCCcC--CCC-----------------C------chhHHHHHHHHHHHhCC-----CCeEEEeCCcCcHHH
Confidence 99999999998542 111 1 14456788888887743 699999999999999
Q ss_pred HHHHHHhCCCEEEEhhHHHhh----hh----HHHHHHHHHHHHHHHHcCCCCHHHhhc
Q 014581 322 AAEFILLGANTVQVCTGVMMH----GY----GLVKRLCEELKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 322 a~~~l~aGAd~V~vgtall~~----Gp----~~i~~i~~~l~~~m~~~G~~si~d~~G 371 (422)
+.|+|.+||++|++|+.+++. |. ..++.+.++|+..|...|.++++|+..
T Consensus 293 i~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~ 350 (366)
T PLN02979 293 VFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISR 350 (366)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCh
Confidence 999999999999999999862 22 357888999999999999999999954
No 54
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.80 E-value=3.5e-17 Score=164.51 Aligned_cols=136 Identities=24% Similarity=0.258 Sum_probs=110.6
Q ss_pred ChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 202 DCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 202 ~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
++...++.++++++.++.||++|-.. ..+.|+.+.++|+|+|+++|+.+.. .| ++
T Consensus 237 ~~~~tW~~i~~lr~~~~~pvivKgV~----~~~dA~~a~~~G~d~I~vsnhGGr~--~d----------------~~--- 291 (383)
T cd03332 237 GPSLTWEDLAFLREWTDLPIVLKGIL----HPDDARRAVEAGVDGVVVSNHGGRQ--VD----------------GS--- 291 (383)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEecCC----CHHHHHHHHHCCCCEEEEcCCCCcC--CC----------------CC---
Confidence 34456688899999999999999442 2578899999999999999976421 11 11
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh----hh----HHHHHHHHH
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----GY----GLVKRLCEE 353 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----Gp----~~i~~i~~~ 353 (422)
+.++..+.++++.+.+ ++|||+.|||+++.|+.|+|.+||++|++|+.+++. |. .+++.+.+|
T Consensus 292 ----~~t~~~L~ei~~~~~~-----~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~E 362 (383)
T cd03332 292 ----IAALDALPEIVEAVGD-----RLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAE 362 (383)
T ss_pred ----cCHHHHHHHHHHHhcC-----CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3346778889888753 699999999999999999999999999999999952 32 358889999
Q ss_pred HHHHHHHcCCCCHHHhhc
Q 014581 354 LKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 354 l~~~m~~~G~~si~d~~G 371 (422)
|+..|...|.++++|+..
T Consensus 363 l~~~m~l~G~~~i~~l~~ 380 (383)
T cd03332 363 LDLTMGLAGIRSIAELTR 380 (383)
T ss_pred HHHHHHHHCCCCHHHhCc
Confidence 999999999999999853
No 55
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.79 E-value=2.8e-17 Score=164.98 Aligned_cols=134 Identities=25% Similarity=0.294 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 204 RLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 204 ~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
...++-++++++.++.||++|-.. ..+.|+.+.++|+|+|++.|..+. .+| +.
T Consensus 231 ~ltW~di~~lr~~~~~pvivKgV~----s~~dA~~a~~~Gvd~I~Vs~hGGr--~~d-----------------~~---- 283 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVIKGIL----DPEDARDAVRFGADGIVVSNHGGR--QLD-----------------GV---- 283 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEEEecC----CHHHHHHHHhCCCCEEEECCCCCC--CCC-----------------Cc----
Confidence 344566889999999999999763 356889999999999999986532 111 10
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh----hh----HHHHHHHHHHH
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----GY----GLVKRLCEELK 355 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----Gp----~~i~~i~~~l~ 355 (422)
+.+...+.++++.+.. ++|||+.|||+++.|+.|+|.+||++|++|+.+++. |. ..++.+.+||+
T Consensus 284 --~~t~~~L~~i~~a~~~-----~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~ 356 (381)
T PRK11197 284 --LSSARALPAIADAVKG-----DITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMR 356 (381)
T ss_pred --ccHHHHHHHHHHHhcC-----CCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 2345677788777632 799999999999999999999999999999999873 22 35888999999
Q ss_pred HHHHHcCCCCHHHhhc
Q 014581 356 DFMKMHNFSSIEDFRG 371 (422)
Q Consensus 356 ~~m~~~G~~si~d~~G 371 (422)
..|...|.++++|+..
T Consensus 357 ~~m~l~G~~~i~el~~ 372 (381)
T PRK11197 357 VAMTLTGAKSISEITR 372 (381)
T ss_pred HHHHHHCCCCHHHhCH
Confidence 9999999999999964
No 56
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.79 E-value=7.9e-17 Score=158.74 Aligned_cols=243 Identities=17% Similarity=0.166 Sum_probs=160.5
Q ss_pred CCCCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccc
Q 014581 40 SASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQI 119 (422)
Q Consensus 40 ~~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~ 119 (422)
+..+++||+++|+|++|+.||+++|+....|.++.+.+.+.|.=.+..| +.
T Consensus 20 ~s~~dvdlst~~~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~~---------------------------- 70 (326)
T PRK05458 20 NSRSECDTSVTLGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-FD---------------------------- 70 (326)
T ss_pred CCHHHcccceEECCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-CC----------------------------
Confidence 3467899999999999999999999864445555555555532112212 00
Q ss_pred cccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEccCCCCCCCcccccc
Q 014581 120 IGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG--IDAIEVNFSCPHGMPERKMGA 197 (422)
Q Consensus 120 ~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aG--aD~iElN~scP~~~~~~~~G~ 197 (422)
+|+.....++.+ ++ .+++++..+.+++++.++. .+.++| +|+|.|+...+|.
T Consensus 71 -------------~e~~~~~~r~~~---~~-~l~v~~~vg~~~~~~~~~~-~Lv~ag~~~d~i~iD~a~gh~-------- 124 (326)
T PRK05458 71 -------------PEARIPFIKDMH---EQ-GLIASISVGVKDDEYDFVD-QLAAEGLTPEYITIDIAHGHS-------- 124 (326)
T ss_pred -------------HHHHHHHHHhcc---cc-ccEEEEEecCCHHHHHHHH-HHHhcCCCCCEEEEECCCCch--------
Confidence 233322232221 22 2355554345666665554 455665 4999999876664
Q ss_pred ccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCcc
Q 014581 198 AVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTP 276 (422)
Q Consensus 198 ~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~ 276 (422)
+.+.++++++|+.. ++||++|-.. ..+.++.|.++|+|++.+.++.+.. -++ +.. .
T Consensus 125 ------~~~~e~I~~ir~~~p~~~vi~g~V~----t~e~a~~l~~aGad~i~vg~~~G~~---~~t--~~~--------~ 181 (326)
T PRK05458 125 ------DSVINMIQHIKKHLPETFVIAGNVG----TPEAVRELENAGADATKVGIGPGKV---CIT--KIK--------T 181 (326)
T ss_pred ------HHHHHHHHHHHhhCCCCeEEEEecC----CHHHHHHHHHcCcCEEEECCCCCcc---ccc--ccc--------c
Confidence 45778899999887 4888887322 3567899999999999888765421 001 000 0
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH----------------
Q 014581 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM---------------- 340 (422)
Q Consensus 277 gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall---------------- 340 (422)
|.. .....+..++++++.+ ++|||+.|||.++.|+.++|.+||++||+|+++.
T Consensus 182 g~~----~~~w~l~ai~~~~~~~-------~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~ 250 (326)
T PRK05458 182 GFG----TGGWQLAALRWCAKAA-------RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKL 250 (326)
T ss_pred CCC----CCccHHHHHHHHHHHc-------CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchh
Confidence 110 0111344577777765 7999999999999999999999999999999987
Q ss_pred ----------hh--------h-----------hHHHHHHHHHHHHHHHHcCCCCHHHhhc
Q 014581 341 ----------MH--------G-----------YGLVKRLCEELKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 341 ----------~~--------G-----------p~~i~~i~~~l~~~m~~~G~~si~d~~G 371 (422)
+. | ..++.++..+|+..|...|..+|+|++.
T Consensus 251 ~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~ 310 (326)
T PRK05458 251 YKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK 310 (326)
T ss_pred HHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc
Confidence 10 0 1235667777888888888888888874
No 57
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.79 E-value=6.9e-17 Score=161.23 Aligned_cols=249 Identities=20% Similarity=0.286 Sum_probs=172.7
Q ss_pred CCCCCcceEeCCeecCCCceecCCC-C---CCCH--HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCC
Q 014581 42 SAEPDLSITVNGLQMPNPFVIGSGP-P---GTNY--TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSA 115 (422)
Q Consensus 42 ~~~~dL~~~~~Gl~l~nPi~~AAg~-~---~~~~--~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a 115 (422)
...+|++|+++|.++..||++|+.- . -.++ ...+.+.++|..+++ -|.+.
T Consensus 55 v~~~d~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~l-St~ss----------------------- 110 (367)
T PLN02493 55 VSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTL-SSWAT----------------------- 110 (367)
T ss_pred CCCCCCceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeee-cCccc-----------------------
Confidence 3578999999999999999999511 1 1233 345555666766443 11110
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCC-c--
Q 014581 116 KGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMP-E-- 192 (422)
Q Consensus 116 ~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~-~-- 192 (422)
.++|++. +. .+.|...|+-...+.+...++.++++++|+.+|.+.+-+|.... +
T Consensus 111 ---------------~slEeva----~~----~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d 167 (367)
T PLN02493 111 ---------------SSVEEVA----ST----GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESD 167 (367)
T ss_pred ---------------CCHHHHH----hc----CCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhh
Confidence 1133321 11 13466677643345666667778888888888887665554310 0
Q ss_pred -cc-c---------------------------cccc--ccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHH
Q 014581 193 -RK-M---------------------------GAAV--GQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALR 241 (422)
Q Consensus 193 -~~-~---------------------------G~~l--~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~ 241 (422)
++ + ...+ ..++...++-++|+|+.+++||+||-.. ..+.++.+.+
T Consensus 168 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~----~~~dA~~a~~ 243 (367)
T PLN02493 168 IKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL----TGEDARIAIQ 243 (367)
T ss_pred hcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC----CHHHHHHHHH
Confidence 00 0 0000 1134455677899999999999999764 2678999999
Q ss_pred cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHH
Q 014581 242 SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGD 321 (422)
Q Consensus 242 aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~d 321 (422)
+|+|+|+++|+.+. ..| +. |.++..+.++++.+.+ ++|||++|||+++.|
T Consensus 244 ~Gvd~I~VsnhGGr--qld-----------------~~------~~t~~~L~ei~~av~~-----~~~vi~dGGIr~G~D 293 (367)
T PLN02493 244 AGAAGIIVSNHGAR--QLD-----------------YV------PATISALEEVVKATQG-----RIPVFLDGGVRRGTD 293 (367)
T ss_pred cCCCEEEECCCCCC--CCC-----------------Cc------hhHHHHHHHHHHHhCC-----CCeEEEeCCcCcHHH
Confidence 99999999998542 111 11 4457788888887743 799999999999999
Q ss_pred HHHHHHhCCCEEEEhhHHHhh----hh----HHHHHHHHHHHHHHHHcCCCCHHHhhc
Q 014581 322 AAEFILLGANTVQVCTGVMMH----GY----GLVKRLCEELKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 322 a~~~l~aGAd~V~vgtall~~----Gp----~~i~~i~~~l~~~m~~~G~~si~d~~G 371 (422)
+.|+|.+||++|++|+.+++. |. .+++.+.++++..|...|.++++|+..
T Consensus 294 v~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 351 (367)
T PLN02493 294 VFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISR 351 (367)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCh
Confidence 999999999999999999862 22 357788899999999999999999953
No 58
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.78 E-value=1.1e-17 Score=167.49 Aligned_cols=258 Identities=18% Similarity=0.280 Sum_probs=171.1
Q ss_pred ceEeCCeecCCCceecCCCCC---CC----H----HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCc
Q 014581 48 SITVNGLQMPNPFVIGSGPPG---TN----Y----TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAK 116 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~---~~----~----~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~ 116 (422)
+.++++++|+|.|+.+++... .+ . +...+.++.|+|.|+++.+..++. +...|
T Consensus 5 P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~--~~~~~-------------- 68 (341)
T PF00724_consen 5 PLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPE--GRGFP-------------- 68 (341)
T ss_dssp -EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGG--GSSST--------------
T ss_pred CeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccc--ccccc--------------
Confidence 468899999999999986431 11 1 234445557999999999887542 11111
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC-------------C--C--------------------C
Q 014581 117 GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME-------------E--Y--------------------N 161 (422)
Q Consensus 117 ~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~-------------~--~--------------------~ 161 (422)
..++++++..++.|.+....+++. +..+++||.- . . +
T Consensus 69 ------~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt 140 (341)
T PF00724_consen 69 ------GQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMT 140 (341)
T ss_dssp ------TSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--
T ss_pred ------ccchhchhhHHHHHHHHHHHHHhc--CccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCC
Confidence 112333433456665555556553 6778888741 0 0 1
Q ss_pred H-------HHHHHHHHHHHHhCCCEEEEcc---------CCCCCCCcc--ccccccccChhHHHHHHHHHhhcc--CccE
Q 014581 162 K-------AAWEELIDRVEETGIDAIEVNF---------SCPHGMPER--KMGAAVGQDCRLLEEVCGWINAKA--TVPV 221 (422)
Q Consensus 162 ~-------~~~~~~a~~~~~aGaD~iElN~---------scP~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~--~iPv 221 (422)
. ++|.+.|++++++|+|+||||. .+|.+ +.| .||++++++...+.+|+++||+.+ +.||
T Consensus 141 ~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~-N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v 219 (341)
T PF00724_consen 141 EEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLT-NRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPV 219 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT----SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeecc-CCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceE
Confidence 2 4577889999999999999984 36665 334 589999999999999999999987 7899
Q ss_pred EEEECCCCC--------ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHH
Q 014581 222 WAKMTPNIT--------DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVM 293 (422)
Q Consensus 222 ~vKl~~~~~--------~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~ 293 (422)
.+|++++-. +..++++.+.+.|+|.+.++..... +... |... ...... ....+....
T Consensus 220 ~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~----~~~~--~~~~-----~~~~~~----~~~~~~~a~ 284 (341)
T PF00724_consen 220 GVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYV----HWSE--PRPS-----PPFDFE----PGYNLDLAE 284 (341)
T ss_dssp EEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEE----EEEB--TSST-----TTTTTT----TTTTHHHHH
T ss_pred EEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccc----cccc--cccc-----cccccc----cchhhhhhh
Confidence 999998532 2345688899999998866543211 1111 1100 001110 011234456
Q ss_pred HHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 294 SIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 294 ~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
.+++.+ ++|||++|||.+++.+.+++..| ||+|.+||+++.+ |++++++.++
T Consensus 285 ~ik~~~-------~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~lad-Pd~~~k~~~g 337 (341)
T PF00724_consen 285 AIKKAV-------KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLAD-PDLPNKAREG 337 (341)
T ss_dssp HHHHHH-------SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH--TTHHHHHHHT
T ss_pred hhhhhc-------CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhC-chHHHHHHcC
Confidence 677766 79999999999999999999977 9999999999999 9999999875
No 59
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.77 E-value=2.6e-16 Score=156.93 Aligned_cols=133 Identities=18% Similarity=0.228 Sum_probs=108.1
Q ss_pred ChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 202 DCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 202 ~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
++...++.++++++.++.|+++|-. . ..+.++.+.+.|+|+|.++|..+. .+| +.
T Consensus 220 d~~~~w~~i~~ir~~~~~pviiKgV---~-~~eda~~a~~~G~d~I~VSnhGGr--qld----------------~~--- 274 (361)
T cd04736 220 DASFNWQDLRWLRDLWPHKLLVKGI---V-TAEDAKRCIELGADGVILSNHGGR--QLD----------------DA--- 274 (361)
T ss_pred CCcCCHHHHHHHHHhCCCCEEEecC---C-CHHHHHHHHHCCcCEEEECCCCcC--CCc----------------CC---
Confidence 3445667899999999999999953 2 356899999999999999997643 111 10
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh----hhh----HHHHHHHHH
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM----HGY----GLVKRLCEE 353 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~----~Gp----~~i~~i~~~ 353 (422)
+.+++.+.++++.+ ++|||+.|||+++.|+.|+|.+||++|++|+++++ .|. ..++.+.+|
T Consensus 275 ----~~~~~~L~ei~~~~-------~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 275 ----IAPIEALAEIVAAT-------YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred ----ccHHHHHHHHHHHh-------CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22467788888776 69999999999999999999999999999999995 332 357889999
Q ss_pred HHHHHHHcCCCCHHHhh
Q 014581 354 LKDFMKMHNFSSIEDFR 370 (422)
Q Consensus 354 l~~~m~~~G~~si~d~~ 370 (422)
|+..|...|..+++|+.
T Consensus 344 l~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 344 IDRTLALIGCPDIASLT 360 (361)
T ss_pred HHHHHHHhCCCCHHHcC
Confidence 99999999999999973
No 60
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.76 E-value=9.4e-17 Score=161.80 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEcc---------CCCCCCCcc--ccccccccChhHHHHHHHHHhhcc-CccEEEEECCCC-
Q 014581 163 AAWEELIDRVEETGIDAIEVNF---------SCPHGMPER--KMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNI- 229 (422)
Q Consensus 163 ~~~~~~a~~~~~aGaD~iElN~---------scP~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~- 229 (422)
++|.+.|++++++|+|+||||. -+|.+ |.| .||++++++...+.||+++||+.+ +-+|.+|+++.-
T Consensus 159 ~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~-N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~ 237 (362)
T PRK10605 159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSS-NQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGT 237 (362)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcC-CCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 4567889999999999999984 46665 344 499999999999999999999987 236999998741
Q ss_pred ----C------C-hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 230 ----T------D-ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 230 ----~------~-~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
. + ..++++.+.+.|+|.|.++... .. ++ . +......+++++.
T Consensus 238 ~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~-----~~----------------~~---~---~~~~~~~~~ik~~ 290 (362)
T PRK10605 238 FNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPD-----WA----------------GG---E---PYSDAFREKVRAR 290 (362)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccc-----cc----------------CC---c---cccHHHHHHHHHH
Confidence 1 2 3677889999999999876421 00 00 0 1112333556666
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
+ ++||+++|++ +++++.+++..| ||+|.+||+++.+ |++++++.++
T Consensus 291 ~-------~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iad-Pd~~~k~~~g 337 (362)
T PRK10605 291 F-------HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN-PDLVARLQRK 337 (362)
T ss_pred C-------CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhC-ccHHHHHhcC
Confidence 5 7899999997 899999999988 9999999999999 9999998775
No 61
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.76 E-value=3.2e-17 Score=180.33 Aligned_cols=255 Identities=16% Similarity=0.181 Sum_probs=169.6
Q ss_pred cceEeCCeecCCCceecCCCC-----C-CCH---HHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcc
Q 014581 47 LSITVNGLQMPNPFVIGSGPP-----G-TNY---TVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117 (422)
Q Consensus 47 L~~~~~Gl~l~nPi~~AAg~~-----~-~~~---~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~ 117 (422)
-+.++.|++|+|.|+.+++.. + .+. ..+.+.++.|+|.|+++.+...+. +...|
T Consensus 401 ~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~--g~~~~--------------- 463 (765)
T PRK08255 401 TPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPE--GRITP--------------- 463 (765)
T ss_pred CccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCC--cCCCC---------------
Confidence 356788999999999997632 1 122 234445557999999998776541 21111
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCC---------------------------------------
Q 014581 118 QIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME--------------------------------------- 158 (422)
Q Consensus 118 ~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~--------------------------------------- 158 (422)
+. +++|++.-++.|.+....+++. .+..+++||.-
T Consensus 464 ~~-----~~~~~d~~i~~~~~~~~~vh~~-gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~ 537 (765)
T PRK08255 464 GC-----PGLYNDEQEAAWKRIVDFVHAN-SDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQV 537 (765)
T ss_pred CC-----CccCCHHHHHHHHHHHHHHHhc-CCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCC
Confidence 11 1233322234443333333331 12355555410
Q ss_pred --CCC-------HHHHHHHHHHHHHhCCCEEEEccC---------CCCCCCc-cccccccccChhHHHHHHHHHhhcc--
Q 014581 159 --EYN-------KAAWEELIDRVEETGIDAIEVNFS---------CPHGMPE-RKMGAAVGQDCRLLEEVCGWINAKA-- 217 (422)
Q Consensus 159 --~~~-------~~~~~~~a~~~~~aGaD~iElN~s---------cP~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~-- 217 (422)
..+ .++|.+.|+++.++|+|+||||.+ ||.++.. ..||++++++.+.+.+|+++||+.+
T Consensus 538 p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~ 617 (765)
T PRK08255 538 PREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPA 617 (765)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCC
Confidence 011 245677888889999999999987 9986322 2589999999999999999999987
Q ss_pred CccEEEEECCC-C-------CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 218 TVPVWAKMTPN-I-------TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 218 ~iPv~vKl~~~-~-------~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
+.||.+|+++. + ++..++++.+.++|+|.|.++...... +. .+ . ...++ ..
T Consensus 618 ~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~-----~~-~~--~-----~~~~~--------~~ 676 (765)
T PRK08255 618 EKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSK-----DE-KP--V-----YGRMY--------QT 676 (765)
T ss_pred CCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCc-----CC-CC--C-----cCccc--------cH
Confidence 58999999973 1 134688999999999999998532110 00 00 0 00011 01
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
....++++.+ ++|||++|+|.+++++.+++..| ||+|++|++++.+ |+++.+...+
T Consensus 677 ~~~~~ik~~~-------~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~d-P~~~~~~~~~ 733 (765)
T PRK08255 677 PFADRIRNEA-------GIATIAVGAISEADHVNSIIAAGRADLCALARPHLAD-PAWTLHEAAE 733 (765)
T ss_pred HHHHHHHHHc-------CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhC-ccHHHHHHHH
Confidence 2335567665 79999999999999999999865 9999999999999 8776655443
No 62
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.75 E-value=9.1e-16 Score=152.48 Aligned_cols=213 Identities=23% Similarity=0.259 Sum_probs=144.2
Q ss_pred CCCCCCCcceEeCC-eecCCCceecCCCCCCCHHHHHHHHHcCC-cEEEecccccCcccCCCCCCeeEeecCCCCCCCcc
Q 014581 40 SASAEPDLSITVNG-LQMPNPFVIGSGPPGTNYTVMKRAFDEGW-GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117 (422)
Q Consensus 40 ~~~~~~dL~~~~~G-l~l~nPi~~AAg~~~~~~~~~~~~~~~G~-Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~ 117 (422)
...+++|+++++.+ +.++.||+.|++....+.++...+.++|. |.+. +..
T Consensus 16 ~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~-~~~--------------------------- 67 (325)
T cd00381 16 VLPSEVDLSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIH-RNM--------------------------- 67 (325)
T ss_pred CCHHHceeeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEe-CCC---------------------------
Confidence 33567899999998 99999999999888788898888888764 5432 110
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccc
Q 014581 118 QIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGA 197 (422)
Q Consensus 118 ~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~ 197 (422)
+.+++.+.++++|+ ...+.+++. .++ +..+.++.+.++|+|.|+++++..+
T Consensus 68 --------------~~~~~~~~i~~vk~---~l~v~~~~~--~~~-~~~~~~~~l~eagv~~I~vd~~~G~--------- 118 (325)
T cd00381 68 --------------SIEEQAEEVRKVKG---RLLVGAAVG--TRE-DDKERAEALVEAGVDVIVIDSAHGH--------- 118 (325)
T ss_pred --------------CHHHHHHHHHHhcc---CceEEEecC--CCh-hHHHHHHHHHhcCCCEEEEECCCCC---------
Confidence 02444455666653 234555553 333 4456667777789999999974322
Q ss_pred ccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCcc
Q 014581 198 AVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTP 276 (422)
Q Consensus 198 ~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~ 276 (422)
++.+.+.++++|+.. ++||++ .++. ..+.|+.+.++|+|+|++..+... . .+.+. .
T Consensus 119 -----~~~~~~~i~~ik~~~p~v~Vi~---G~v~-t~~~A~~l~~aGaD~I~vg~g~G~---~--~~t~~---------~ 175 (325)
T cd00381 119 -----SVYVIEMIKFIKKKYPNVDVIA---GNVV-TAEAARDLIDAGADGVKVGIGPGS---I--CTTRI---------V 175 (325)
T ss_pred -----cHHHHHHHHHHHHHCCCceEEE---CCCC-CHHHHHHHHhcCCCEEEECCCCCc---C--cccce---------e
Confidence 134667888888765 477776 4443 356789999999999988532211 0 00000 0
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 277 gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.|. |. | .+..+.++++.+.+ .++|||++|||.++.|+.+++.+||++||+||.|..
T Consensus 176 ~g~-g~---p-~~~~i~~v~~~~~~----~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~ 231 (325)
T cd00381 176 TGV-GV---P-QATAVADVAAAARD----YGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAG 231 (325)
T ss_pred CCC-CC---C-HHHHHHHHHHHHhh----cCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcc
Confidence 111 11 2 24556666665532 269999999999999999999999999999998864
No 63
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=99.75 E-value=6.1e-16 Score=146.82 Aligned_cols=249 Identities=21% Similarity=0.311 Sum_probs=169.8
Q ss_pred CCCCCcceEeCCeecCCCceecC-------CCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCC
Q 014581 42 SAEPDLSITVNGLQMPNPFVIGS-------GPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGS 114 (422)
Q Consensus 42 ~~~~dL~~~~~Gl~l~nPi~~AA-------g~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~ 114 (422)
...+|++|++.|.++.-||++|+ -|++ ....++++..+|...++. |..
T Consensus 53 Vs~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdG-E~~taraa~~~~~~~i~S-s~a----------------------- 107 (363)
T KOG0538|consen 53 VSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDG-ELATARAAQAAGTIMILS-SWA----------------------- 107 (363)
T ss_pred cccccccceeccccccceeEEcchHHHhccCCcc-cHHHHHHHHhcCCcEEEe-chh-----------------------
Confidence 46789999999999999999996 2221 223355555555443331 110
Q ss_pred CcccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEcc----------
Q 014581 115 AKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNF---------- 184 (422)
Q Consensus 115 a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~---------- 184 (422)
..++|++ .+..|...-..|+---.+.+.-.++++++|++|+.++.+-+
T Consensus 108 ---------------t~S~EdI-------~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~ 165 (363)
T KOG0538|consen 108 ---------------TCSVEDI-------ASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRES 165 (363)
T ss_pred ---------------cCCHHHH-------HhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchh
Confidence 0112221 12233333444443223344455677777777777777633
Q ss_pred ------CCCCCC---Ccc-----cc------c----cccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHH
Q 014581 185 ------SCPHGM---PER-----KM------G----AAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVAL 240 (422)
Q Consensus 185 ------scP~~~---~~~-----~~------G----~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~ 240 (422)
+.|... +.. .. | .+-.-++...++-++|++..++.||++|-... .+-|+.+.
T Consensus 166 D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt----~eDA~~Av 241 (363)
T KOG0538|consen 166 DIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLT----GEDARKAV 241 (363)
T ss_pred hhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecc----cHHHHHHH
Confidence 233210 000 00 0 01112667788899999999999999997654 35688899
Q ss_pred HcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHH
Q 014581 241 RSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGG 320 (422)
Q Consensus 241 ~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~ 320 (422)
++|++||+++|+... .+| + -|.+++.+.++.+++.+ ++||...|||+++.
T Consensus 242 e~G~~GIIVSNHGgR--QlD------------------~-----vpAtI~~L~Evv~aV~~-----ri~V~lDGGVR~G~ 291 (363)
T KOG0538|consen 242 EAGVAGIIVSNHGGR--QLD------------------Y-----VPATIEALPEVVKAVEG-----RIPVFLDGGVRRGT 291 (363)
T ss_pred HhCCceEEEeCCCcc--ccC------------------c-----ccchHHHHHHHHHHhcC-----ceEEEEecCcccch
Confidence 999999999998753 222 1 15567889999999976 79999999999999
Q ss_pred HHHHHHHhCCCEEEEhhHHHhh-------hh-HHHHHHHHHHHHHHHHcCCCCHHHhhc
Q 014581 321 DAAEFILLGANTVQVCTGVMMH-------GY-GLVKRLCEELKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 321 da~~~l~aGAd~V~vgtall~~-------Gp-~~i~~i~~~l~~~m~~~G~~si~d~~G 371 (422)
|+.|+|++||.+|-+||.+++. |. ..++-+.++++..|...|+.|+.|+.-
T Consensus 292 DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~ 350 (363)
T KOG0538|consen 292 DVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITR 350 (363)
T ss_pred HHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHHHHHHhCCCchhhhCc
Confidence 9999999999999999999872 33 356778889999999999999999853
No 64
>PLN02411 12-oxophytodienoate reductase
Probab=99.72 E-value=1.1e-15 Score=155.42 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEcc---------CCCCCCCcc--ccccccccChhHHHHHHHHHhhccC-ccEEEEECCCC-
Q 014581 163 AAWEELIDRVEETGIDAIEVNF---------SCPHGMPER--KMGAAVGQDCRLLEEVCGWINAKAT-VPVWAKMTPNI- 229 (422)
Q Consensus 163 ~~~~~~a~~~~~aGaD~iElN~---------scP~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~~-iPv~vKl~~~~- 229 (422)
++|.+.|+++.++|+|+||||. .+|.+ +.| .||++++++...+.+|+++||+++. -.|.+|+++..
T Consensus 165 ~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~t-N~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~ 243 (391)
T PLN02411 165 EHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAID 243 (391)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccc
Confidence 4667889999999999999984 46765 334 5899999999999999999999873 25999999731
Q ss_pred ------C----ChHHHHHHHHHc------CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHH
Q 014581 230 ------T----DITEPARVALRS------GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVM 293 (422)
Q Consensus 230 ------~----~~~~~a~~l~~a------Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~ 293 (422)
. +...+++.+.+. |+|.|.++........ ...+ ...+..+ .-....+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~------~~~~------~~~~~~~-----~~~~~a~ 306 (391)
T PLN02411 244 HLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYG------QTES------GRHGSEE-----EEAQLMR 306 (391)
T ss_pred ccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccC------CCcc------cccCCcc-----chhHHHH
Confidence 1 124566666653 5899988764321000 0000 0000000 0112335
Q ss_pred HHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 294 SIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 294 ~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
++++.+ ++|||++||| +.+++.+++..| ||+|.+||+++.+ |+++++++++
T Consensus 307 ~ik~~v-------~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iad-Pdl~~k~~~g 358 (391)
T PLN02411 307 TLRRAY-------QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISN-PDLVLRFKLN 358 (391)
T ss_pred HHHHHc-------CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhC-ccHHHHHhcC
Confidence 677765 7899999999 579999999998 9999999999999 9999998765
No 65
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.68 E-value=2.5e-14 Score=139.59 Aligned_cols=212 Identities=15% Similarity=0.072 Sum_probs=148.2
Q ss_pred CCCCCcceEeC-----CeecCCCceecCCCCCCCHHHHHHHHHcC-CcEEEecccccCcccCCCCCCeeEeecCCCCCCC
Q 014581 42 SAEPDLSITVN-----GLQMPNPFVIGSGPPGTNYTVMKRAFDEG-WGAVVAKTVSLDAAKVINVTPRYARLRAGANGSA 115 (422)
Q Consensus 42 ~~~~dL~~~~~-----Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G-~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a 115 (422)
++++||+++|. .+.|.-|++.|.+....+.++..++++.| ++++. |+
T Consensus 25 R~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iH----------------k~----------- 77 (343)
T TIGR01305 25 RADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIH----------------KH----------- 77 (343)
T ss_pred HHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEe----------------eC-----------
Confidence 36789999997 45899999999988878999999998864 55442 11
Q ss_pred cccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh--CCCEEEEccCCCCCCCcc
Q 014581 116 KGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET--GIDAIEVNFSCPHGMPER 193 (422)
Q Consensus 116 ~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a--GaD~iElN~scP~~~~~~ 193 (422)
.. +|+|.+.+++.++.. ..-+.++++ ..++++.++.+.+ ++ ++|+|.|+.+.-|+
T Consensus 78 ---------~~------~e~~~~~v~~~~~~~-~~~~~vsvG--~~~~d~er~~~L~-~a~~~~d~iviD~AhGhs---- 134 (343)
T TIGR01305 78 ---------YS------VDEWKAFATNSSPDC-LQNVAVSSG--SSDNDLEKMTSIL-EAVPQLKFICLDVANGYS---- 134 (343)
T ss_pred ---------CC------HHHHHHHHHhhcccc-cceEEEEec--cCHHHHHHHHHHH-hcCCCCCEEEEECCCCcH----
Confidence 11 677877777655432 345666774 4566766555544 44 59999999764332
Q ss_pred ccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCC
Q 014581 194 KMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGY 273 (422)
Q Consensus 194 ~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~ 273 (422)
+.+.+.++++|+....+.++|- |+. ..+.++.|.++|||+|.+.=..+. +. +.+.
T Consensus 135 ----------~~~i~~ik~ir~~~p~~~viaG--NV~-T~e~a~~Li~aGAD~ikVgiGpGS---ic--ttR~------- 189 (343)
T TIGR01305 135 ----------EHFVEFVKLVREAFPEHTIMAG--NVV-TGEMVEELILSGADIVKVGIGPGS---VC--TTRT------- 189 (343)
T ss_pred ----------HHHHHHHHHHHhhCCCCeEEEe--ccc-CHHHHHHHHHcCCCEEEEcccCCC---cc--cCce-------
Confidence 4577888999988766677774 333 356789999999999977611110 00 0010
Q ss_pred CccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHH
Q 014581 274 STPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339 (422)
Q Consensus 274 ~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtal 339 (422)
..|. | .| .+..|.+++++..+ .++|||+.|||.++.|+.|+|.+|||+||+|+.+
T Consensus 190 --~~Gv-g---~p-qltAv~~~a~aa~~----~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~ll 244 (343)
T TIGR01305 190 --KTGV-G---YP-QLSAVIECADAAHG----LKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMF 244 (343)
T ss_pred --eCCC-C---cC-HHHHHHHHHHHhcc----CCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhh
Confidence 1111 1 12 35678888887753 2799999999999999999999999999999765
No 66
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.66 E-value=1.4e-14 Score=145.67 Aligned_cols=287 Identities=16% Similarity=0.191 Sum_probs=170.6
Q ss_pred cCCCCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCC-cEEEecccccCcccCCCCCCeeEeecCCCCCCCcc
Q 014581 39 DSASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGW-GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117 (422)
Q Consensus 39 ~~~~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~-Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~ 117 (422)
.+..+++||++.+.++.|+.||+.+++....+.++...+.++|. |.+..+++.. +..++.+...++.......+..
T Consensus 29 ~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~---~~~~~e~l~~qi~~~~~~~~~~ 105 (368)
T PRK08649 29 TRDPEDVSTSWQIDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWT---RYEDPEPILDEIASLGKDEATR 105 (368)
T ss_pred CCCHHHceeeeeecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccc---cCCCHHHHHHHHHhcCcHHHHH
Confidence 34467889999999999999999999887788999999989865 8888655431 0111111111111000000000
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccc
Q 014581 118 QIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGA 197 (422)
Q Consensus 118 ~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~ 197 (422)
. ++... -.+..++...+.++.+++. . +.+.+. .++.++.+.++.++++|+|+|.++...... .++.
T Consensus 106 ~---~~~~~-~~P~~p~l~~~iv~~~~~~--~--V~v~vr--~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~----~h~~ 171 (368)
T PRK08649 106 L---MQELY-AEPIKPELITERIAEIRDA--G--VIVAVS--LSPQRAQELAPTVVEAGVDLFVIQGTVVSA----EHVS 171 (368)
T ss_pred H---HHHhh-cCCCCHHHHHHHHHHHHhC--e--EEEEEe--cCCcCHHHHHHHHHHCCCCEEEEeccchhh----hccC
Confidence 0 00000 0012345556667777663 3 333442 234557788899999999999998532111 0100
Q ss_pred ccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 198 AVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 198 ~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
. ..+++. +.+.+++ .++||++. ++.+ .+.++.+.++|+|+|.+ +...+. +. +.+. ..|
T Consensus 172 ~-~~~~~~---i~~~ik~-~~ipVIaG---~V~t-~e~A~~l~~aGAD~V~V-G~G~Gs--~~--~t~~--------~~g 229 (368)
T PRK08649 172 K-EGEPLN---LKEFIYE-LDVPVIVG---GCVT-YTTALHLMRTGAAGVLV-GIGPGA--AC--TSRG--------VLG 229 (368)
T ss_pred C-cCCHHH---HHHHHHH-CCCCEEEe---CCCC-HHHHHHHHHcCCCEEEE-CCCCCc--CC--CCcc--------cCC
Confidence 0 013333 3444443 38999883 3333 56788888999999966 433221 11 1000 001
Q ss_pred -CCCCCCcchhHHHHHHHHHHHhhc---cCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh------------
Q 014581 278 -GYSCKAVHPIALGKVMSIAKMMKS---EFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM------------ 341 (422)
Q Consensus 278 -G~sG~~i~p~al~~v~~i~~~~~~---~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~------------ 341 (422)
|+ |+ +..|.++++...+ +.+..++|||+.|||.++.|+.++|.+|||+||+||.|..
T Consensus 230 ~g~------p~-~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~g 302 (368)
T PRK08649 230 IGV------PM-ATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWG 302 (368)
T ss_pred CCc------CH-HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccC
Confidence 22 32 2344455433211 1111259999999999999999999999999999999875
Q ss_pred ------------------hhh--HHHH----------HHHHHHHHHHHHcCCCCHHHhhc
Q 014581 342 ------------------HGY--GLVK----------RLCEELKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 342 ------------------~Gp--~~i~----------~i~~~l~~~m~~~G~~si~d~~G 371 (422)
.|+ +++. ++..+|+.-|...|+.+|.||+.
T Consensus 303 m~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~ 362 (368)
T PRK08649 303 MAAPHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQK 362 (368)
T ss_pred cccCCCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhh
Confidence 122 1233 67788889999999999999864
No 67
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.65 E-value=2.9e-14 Score=143.03 Aligned_cols=283 Identities=18% Similarity=0.214 Sum_probs=164.3
Q ss_pred CCCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCC-cEEEecccccCcccCCCCCCeeEeecCC-CCC---CCc
Q 014581 42 SAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGW-GAVVAKTVSLDAAKVINVTPRYARLRAG-ANG---SAK 116 (422)
Q Consensus 42 ~~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~-Gavv~ktv~~~~~~~~~~~pr~~~~~~~-~~~---~a~ 116 (422)
.+++|+++++.+++|++||++|++-.-.+..+...+.++|. |.+-.+.+.... .++.+...++... ..+ ++.
T Consensus 29 ~~~v~~~~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgvvsaegl~~~~---~~~~~~~~QI~g~~~~~~~a~aa 105 (369)
T TIGR01304 29 SKDVDTAWQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGVLNLEGLWGRH---EDPDPAIAKIAEAYEEGDQAAAT 105 (369)
T ss_pred hhhccceeEEcceecCCceeecCCCcccCHHHHHHHHHcCCcccccchHHHhcC---CCHHHHHHHHhhcCCChHHHHHH
Confidence 55778999999999999999998666578888888888888 775444443211 1112222111110 000 000
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccc
Q 014581 117 GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMG 196 (422)
Q Consensus 117 ~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G 196 (422)
.. +++.+ .....++-..+.++.+++. . +.+.+. .++..+.++++.++++|+|.|.++-..-. ..+.
T Consensus 106 ~~---~~e~~-~~~~~p~l~~~ii~~vr~a--~--VtvkiR--l~~~~~~e~a~~l~eAGad~I~ihgrt~~----q~~~ 171 (369)
T TIGR01304 106 RL---LQELH-AAPLKPELLGERIAEVRDS--G--VITAVR--VSPQNAREIAPIVVKAGADLLVIQGTLVS----AEHV 171 (369)
T ss_pred HH---HHHcC-CCccChHHHHHHHHHHHhc--c--eEEEEe--cCCcCHHHHHHHHHHCCCCEEEEeccchh----hhcc
Confidence 00 00000 0112245555566777763 2 444443 13456788999999999999999832100 0010
Q ss_pred cccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCcc
Q 014581 197 AAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTP 276 (422)
Q Consensus 197 ~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~ 276 (422)
.. ..++..+.++++. .++||++ .++.+ .+.++.+.+.|+|+|. +++..... + + ..
T Consensus 172 sg-~~~p~~l~~~i~~----~~IPVI~---G~V~t-~e~A~~~~~aGaDgV~-~G~gg~~~-----~-~---------~~ 226 (369)
T TIGR01304 172 ST-SGEPLNLKEFIGE----LDVPVIA---GGVND-YTTALHLMRTGAAGVI-VGPGGANT-----T-R---------LV 226 (369)
T ss_pred CC-CCCHHHHHHHHHH----CCCCEEE---eCCCC-HHHHHHHHHcCCCEEE-ECCCCCcc-----c-c---------cc
Confidence 00 1244444444443 4899997 23333 5668888889999998 43322110 0 0 00
Q ss_pred CCCCCCCcchhHHHHHHHHHHHh---hccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh------hhhH--
Q 014581 277 GGYSCKAVHPIALGKVMSIAKMM---KSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM------HGYG-- 345 (422)
Q Consensus 277 gG~sG~~i~p~al~~v~~i~~~~---~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~------~Gp~-- 345 (422)
-+. | .|. ...|.+++++. .++.+...+|||+.|||.++.|+.++|++|||+||+||+|.. +|+.
T Consensus 227 lg~-~---~p~-~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~ 301 (369)
T TIGR01304 227 LGI-E---VPM-ATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWP 301 (369)
T ss_pred cCC-C---CCH-HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccc
Confidence 010 1 132 23344443321 111111259999999999999999999999999999999986 1111
Q ss_pred -----------------------HHH--------------HHHHHHHHHHHHcCCCCHHHhhc
Q 014581 346 -----------------------LVK--------------RLCEELKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 346 -----------------------~i~--------------~i~~~l~~~m~~~G~~si~d~~G 371 (422)
-++ .+.-.|+..|...||.++.||..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~ 364 (369)
T TIGR01304 302 AAAAHPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQK 364 (369)
T ss_pred hhhcCccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhh
Confidence 122 34567888999999999998853
No 68
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.64 E-value=2e-15 Score=150.64 Aligned_cols=201 Identities=16% Similarity=0.228 Sum_probs=156.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH-hCCCEEEEccCCCCCCCc-cccccccccChhHHHHHHHHHhhcc-CccEEEEE
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEE-TGIDAIEVNFSCPHGMPE-RKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKM 225 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~-aGaD~iElN~scP~~~~~-~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl 225 (422)
...++||+. +..++...++|+.+.+ ..+|+|+||++||-.... .+.|.++..+|..+.++++...... .+||.||+
T Consensus 319 EdiFGVQla-g~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKi 397 (614)
T KOG2333|consen 319 EDIFGVQLA-GSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKI 397 (614)
T ss_pred ccceeeEec-cCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEE
Confidence 458999997 5668888888887754 469999999999986533 4678899999999999999988777 56999999
Q ss_pred CCCCCC----hHHHHHHHH-HcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhh
Q 014581 226 TPNITD----ITEPARVAL-RSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMK 300 (422)
Q Consensus 226 ~~~~~~----~~~~a~~l~-~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~ 300 (422)
+..+-+ ..+++..+. +.|+++|++|+|..+- + |+ +-..+++|.++++...
T Consensus 398 RTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQ------R---------YT----------K~AnWdYi~e~a~~ak 452 (614)
T KOG2333|consen 398 RTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQ------R---------YT----------KSANWDYIEECADKAK 452 (614)
T ss_pred ecccccCchhHHHHHHHHhhccCcceEEecCchhhh------h---------hh----------cccChHHHHHHHHhcc
Confidence 876433 345666666 8999999999987541 1 11 1123678889988774
Q ss_pred ccCCCCCceEEEecCCCCHHHHHHHHHhC--CCEEEEhhHHHhhhhHHHHHHHHHHHHH--HHHcCCCCHHHhhcCCccc
Q 014581 301 SEFNDKDYSLSGIGGVETGGDAAEFILLG--ANTVQVCTGVMMHGYGLVKRLCEELKDF--MKMHNFSSIEDFRGASIEY 376 (422)
Q Consensus 301 ~~~~~~~ipIIa~GGI~s~~da~~~l~aG--Ad~V~vgtall~~Gp~~i~~i~~~l~~~--m~~~G~~si~d~~G~~~~~ 376 (422)
..+|+|++|.|.|++|-.+.+..+ .+.|||+++.+.. ||+|.+|.+. ..| -....+.-+.|+....+.|
T Consensus 453 -----~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIK-PWIFtEIkeq-q~wD~sSteRldiL~df~nyGLeH 525 (614)
T KOG2333|consen 453 -----SALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIK-PWIFTEIKEQ-QHWDISSTERLDILKDFCNYGLEH 525 (614)
T ss_pred -----cCceeEecCccccHHHHHHHhhcCCCcceEEeecccccc-chHhhhhhhh-hcCCccchHHHHHHHHHHhhhhhh
Confidence 149999999999999999998855 8999999999999 9999999765 333 1233344578888888999
Q ss_pred CCChhH
Q 014581 377 FTTHTE 382 (422)
Q Consensus 377 ~~~~~~ 382 (422)
|.++++
T Consensus 526 WGSDt~ 531 (614)
T KOG2333|consen 526 WGSDTK 531 (614)
T ss_pred cCCccc
Confidence 987765
No 69
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.61 E-value=2.6e-13 Score=132.49 Aligned_cols=211 Identities=17% Similarity=0.076 Sum_probs=146.5
Q ss_pred CCCCcceEeC-----CeecCCCceecCCCCCCCHHHHHHHHHcC-CcEEEecccccCcccCCCCCCeeEeecCCCCCCCc
Q 014581 43 AEPDLSITVN-----GLQMPNPFVIGSGPPGTNYTVMKRAFDEG-WGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAK 116 (422)
Q Consensus 43 ~~~dL~~~~~-----Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G-~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~ 116 (422)
+++||+.+|. ...+.-|++.|.+-...+.++...+++.| ++++. | .
T Consensus 27 sevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iH-k---------------~------------ 78 (346)
T PRK05096 27 SDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVH-K---------------H------------ 78 (346)
T ss_pred HHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEe-c---------------C------------
Confidence 5667777776 56678999999988778899999998874 45442 1 0
Q ss_pred ccccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHH-hCCCEEEEccCCCCCCCcccc
Q 014581 117 GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEE-TGIDAIEVNFSCPHGMPERKM 195 (422)
Q Consensus 117 ~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~-aGaD~iElN~scP~~~~~~~~ 195 (422)
. ++|+|.+.+++.+... ..-+.++++ ..++++.++.+.++. +|+|+|.|+.+.-|+
T Consensus 79 --------~------~~e~~~~fv~~~~~~~-~~~~~vavG--~~~~d~er~~~L~~~~~g~D~iviD~AhGhs------ 135 (346)
T PRK05096 79 --------Y------SVEEWAAFVNNSSADV-LKHVMVSTG--TSDADFEKTKQILALSPALNFICIDVANGYS------ 135 (346)
T ss_pred --------C------CHHHHHHHHHhccccc-cceEEEEec--CCHHHHHHHHHHHhcCCCCCEEEEECCCCcH------
Confidence 0 1678888777766421 234666774 567777777665553 699999999764332
Q ss_pred ccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCC
Q 014581 196 GAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYS 274 (422)
Q Consensus 196 G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~ 274 (422)
+.+.+.++++|+.. +++|++ .|+.. .+.++.|.++|||+|.+.=..+. + -+-+.
T Consensus 136 --------~~~i~~ik~ik~~~P~~~vIa---GNV~T-~e~a~~Li~aGAD~vKVGIGpGS---i--CtTr~-------- 190 (346)
T PRK05096 136 --------EHFVQFVAKAREAWPDKTICA---GNVVT-GEMVEELILSGADIVKVGIGPGS---V--CTTRV-------- 190 (346)
T ss_pred --------HHHHHHHHHHHHhCCCCcEEE---ecccC-HHHHHHHHHcCCCEEEEcccCCc---c--ccCcc--------
Confidence 45777888898865 678776 55543 56899999999999865321111 1 11111
Q ss_pred ccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHH
Q 014581 275 TPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339 (422)
Q Consensus 275 ~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtal 339 (422)
..|. | .|+ +..|.++++...+ .++|||+.|||.+.-|+.|+|.+|||+||+|+.|
T Consensus 191 -vtGv-G---~PQ-ltAV~~~a~~a~~----~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsll 245 (346)
T PRK05096 191 -KTGV-G---YPQ-LSAVIECADAAHG----LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGML 245 (346)
T ss_pred -cccc-C---hhH-HHHHHHHHHHHHH----cCCCEEecCCcccccHHHHHHHcCCCEEEeChhh
Confidence 1121 1 132 4567777776543 2799999999999999999999999999999987
No 70
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.57 E-value=4.4e-13 Score=136.63 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=112.7
Q ss_pred cChhHHHHHHHHHhhccC-ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 201 QDCRLLEEVCGWINAKAT-VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 201 ~~~~~v~~iv~~vr~~~~-iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
.+++.+.++++++|+.++ +||++|+.++. +..++++.+...|+|+|++.|+..+. +. .|.. +....|+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-~~~~~a~~~~~~g~D~I~VsG~~Ggt-g~-----~~~~----~~~~~g~ 264 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-GEGDIAAGVAAAGADFITIDGAEGGT-GA-----APLT----FIDHVGL 264 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC-CHHHHHHHHHHcCCCEEEEeCCCCCC-CC-----Cccc----ccccCCc
Confidence 566788999999999987 99999999874 66788888888889999999986531 11 0100 0011222
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh-----------------
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----------------- 342 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----------------- 342 (422)
|. ...+.++++.+...-.+.++|||++|||.++.|+.+++++|||+|++||+++..
T Consensus 265 ------pt-~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~G 337 (392)
T cd02808 265 ------PT-ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVG 337 (392)
T ss_pred ------cH-HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcc
Confidence 22 234445555442110012699999999999999999999999999999999942
Q ss_pred ----------------h----hHHHHHHHHHHHHHHHHcCCCCHHHhhc
Q 014581 343 ----------------G----YGLVKRLCEELKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 343 ----------------G----p~~i~~i~~~l~~~m~~~G~~si~d~~G 371 (422)
| ..+++.+.++|+..|...|+.+++++..
T Consensus 338 iat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~ 386 (392)
T cd02808 338 VATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGR 386 (392)
T ss_pred cccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCH
Confidence 2 2357889999999999999999998853
No 71
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.56 E-value=5e-13 Score=135.11 Aligned_cols=248 Identities=17% Similarity=0.198 Sum_probs=145.9
Q ss_pred CCCCCCcceEeC-CeecCCCceecCCCCCCCHHHHHHHHHc-CCcEEEecccccCcccCCCCCCeeEeecCCC----CC-
Q 014581 41 ASAEPDLSITVN-GLQMPNPFVIGSGPPGTNYTVMKRAFDE-GWGAVVAKTVSLDAAKVINVTPRYARLRAGA----NG- 113 (422)
Q Consensus 41 ~~~~~dL~~~~~-Gl~l~nPi~~AAg~~~~~~~~~~~~~~~-G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~----~~- 113 (422)
...++|+++++. .+.++-||+-|++....+.++..++.++ |+|++. +..+.+. ....-.+..+...+. +.
T Consensus 25 ~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~-~~~~~e~--l~~eI~~vk~~~~~~~i~~~~d 101 (404)
T PRK06843 25 LPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIH-KNMSIEA--QRKEIEKVKTYKFQKTINTNGD 101 (404)
T ss_pred CHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEec-CCCCHHH--HHHHHHHHHhhcCCCceeeccc
Confidence 356789999996 7889999998887776788989998887 578665 4444322 000000000000000 00
Q ss_pred --CCcccccccccccccCCChHHHHHHHHHHHHhhCC--------CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEc
Q 014581 114 --SAKGQIIGWENIELISDRPLETMLKEFKQLKALYP--------DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVN 183 (422)
Q Consensus 114 --~a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~--------~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN 183 (422)
......+-.. +.+ ..++....+.+.++ +| ...+.++++ .+++ ..+.++.+.++|+|.|-|.
T Consensus 102 ~~~~~~~~~t~~--~~~---~~~~~~~d~~~~~~-~~~a~~d~~~~l~v~aavg--~~~~-~~~~v~~lv~aGvDvI~iD 172 (404)
T PRK06843 102 TNEQKPEIFTAK--QHL---EKSDAYKNAEHKED-FPNACKDLNNKLRVGAAVS--IDID-TIERVEELVKAHVDILVID 172 (404)
T ss_pred ccccchhheecc--ccc---hHHHHHhhhhhhhh-cchhhhhhhcCeEEEEEEe--CCHH-HHHHHHHHHhcCCCEEEEE
Confidence 0000000000 000 01111111211111 11 134667774 3454 4456677778899999998
Q ss_pred cCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCccccccccc
Q 014581 184 FSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLK 262 (422)
Q Consensus 184 ~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e 262 (422)
...++. +.+.++++++|+.. +.+|+++-.. ..+.++.+.++|+|+|.+..+..+ +.
T Consensus 173 ~a~g~~--------------~~~~~~v~~ik~~~p~~~vi~g~V~----T~e~a~~l~~aGaD~I~vG~g~Gs---~c-- 229 (404)
T PRK06843 173 SAHGHS--------------TRIIELVKKIKTKYPNLDLIAGNIV----TKEAALDLISVGADCLKVGIGPGS---IC-- 229 (404)
T ss_pred CCCCCC--------------hhHHHHHHHHHhhCCCCcEEEEecC----CHHHHHHHHHcCCCEEEECCCCCc---CC--
Confidence 765543 34778888898876 7888886443 356789999999999986433221 11
Q ss_pred CCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 263 TLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 263 ~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
+.+. ..|. |. | .+..+..+++.+.+ .++|||+.|||.++.|+.++|.+||++||+|+++..
T Consensus 230 ~tr~---------~~g~-g~---p-~ltai~~v~~~~~~----~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ag 290 (404)
T PRK06843 230 TTRI---------VAGV-GV---P-QITAICDVYEVCKN----TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG 290 (404)
T ss_pred ccee---------ecCC-CC---C-hHHHHHHHHHHHhh----cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeee
Confidence 0000 0121 21 2 23344445554422 279999999999999999999999999999999865
No 72
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.56 E-value=3.6e-13 Score=132.89 Aligned_cols=188 Identities=21% Similarity=0.266 Sum_probs=135.2
Q ss_pred eecCCCceecCCCCCCCHHHHHHHHHcC-CcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCCh
Q 014581 54 LQMPNPFVIGSGPPGTNYTVMKRAFDEG-WGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRP 132 (422)
Q Consensus 54 l~l~nPi~~AAg~~~~~~~~~~~~~~~G-~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~ 132 (422)
+.++.||+.|++....+.+...+..++| +|++-.+. . +
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~---------------------------------~--------~ 46 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGN---------------------------------A--------P 46 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceecccc---------------------------------C--------C
Confidence 3567899999877778899888888874 56442110 0 1
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
++.+.++|+++++. .+.|+.+|+.. ..+ .+.+..+.+.+.+++.|.+..+.|. ++++.
T Consensus 47 ~~~l~~~i~~~~~~-t~~pfgvn~~~-~~~-~~~~~~~~~~~~~v~~v~~~~g~p~-------------------~~i~~ 104 (307)
T TIGR03151 47 PDVVRKEIRKVKEL-TDKPFGVNIML-LSP-FVDELVDLVIEEKVPVVTTGAGNPG-------------------KYIPR 104 (307)
T ss_pred HHHHHHHHHHHHHh-cCCCcEEeeec-CCC-CHHHHHHHHHhCCCCEEEEcCCCcH-------------------HHHHH
Confidence 45566677777764 37899999863 222 3445566666779999998654331 35666
Q ss_pred HhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHH
Q 014581 213 INAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292 (422)
Q Consensus 213 vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v 292 (422)
+|+. .++|+..++ + .+.++.+.++|+|+|++.++-. ||+.|. ...+..+
T Consensus 105 lk~~-g~~v~~~v~----s-~~~a~~a~~~GaD~Ivv~g~ea----------------------gGh~g~---~~~~~ll 153 (307)
T TIGR03151 105 LKEN-GVKVIPVVA----S-VALAKRMEKAGADAVIAEGMES----------------------GGHIGE---LTTMALV 153 (307)
T ss_pred HHHc-CCEEEEEcC----C-HHHHHHHHHcCCCEEEEECccc----------------------CCCCCC---CcHHHHH
Confidence 6665 677776542 2 5678999999999999987632 333332 1246778
Q ss_pred HHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 293 MSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 293 ~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+++++.+ ++|||+.|||.+++|+.+++.+||++|++||.++..
T Consensus 154 ~~v~~~~-------~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 154 PQVVDAV-------SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred HHHHHHh-------CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence 8888776 799999999999999999999999999999999874
No 73
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.55 E-value=4.4e-13 Score=128.32 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=127.0
Q ss_pred eEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHH-----HHHHHHhhccCccE--E
Q 014581 151 ILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLE-----EVCGWINAKATVPV--W 222 (422)
Q Consensus 151 pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~-----~iv~~vr~~~~iPv--~ 222 (422)
.++.-+..|+ +.++|.++++.++++ +|+||||++||+... + |..+++..+... ++++.+|+.+++|+ +
T Consensus 5 ~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~a--d-G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM 80 (244)
T PRK13125 5 GLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKY--D-GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILM 80 (244)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCC--C-CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEE
Confidence 3666666554 889999999999987 999999999998632 1 445555555555 79999998889997 4
Q ss_pred EEECCCCCChHHHHHHHHHcCCCEEEEecCCc---c----------------cccccccC----CCCCCC-CCCC---Cc
Q 014581 223 AKMTPNITDITEPARVALRSGSEGVSAINTIM---S----------------VMGIDLKT----LRPEPC-VEGY---ST 275 (422)
Q Consensus 223 vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~---~----------------~~~id~e~----~~p~~~-~~~~---~~ 275 (422)
+|+++...++.++++.+.++|+|+|+++.... . ...+++.+ .++... ..++ +.
T Consensus 81 ~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv 160 (244)
T PRK13125 81 TYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGL 160 (244)
T ss_pred EecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEe
Confidence 89999777889999999999999999874210 0 00111111 011000 0011 12
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 276 PGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 276 ~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.++. |..+.+...+.++++++... +.||+..|||++++++.+++.+|||+|.+||+++.
T Consensus 161 ~~~~-g~~~~~~~~~~i~~lr~~~~------~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 161 RPAT-GVPLPVSVERNIKRVRNLVG------NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCC-CCCchHHHHHHHHHHHHhcC------CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 2333 22344555667888887653 47899999999999999999999999999999985
No 74
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.55 E-value=9.8e-13 Score=119.68 Aligned_cols=196 Identities=22% Similarity=0.137 Sum_probs=128.4
Q ss_pred ceecCCCCC---CCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHH
Q 014581 60 FVIGSGPPG---TNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETM 136 (422)
Q Consensus 60 i~~AAg~~~---~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~ 136 (422)
|++++.+.+ ...+.++.+.+.|++++.+++....+. .+ .... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~--~~-----------------------~~~~------~--- 46 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPE--EA-----------------------ETDD------K--- 46 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcc--cC-----------------------CCcc------c---
Confidence 345555554 346778888888999999987654321 00 0000 0
Q ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 137 LKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 137 l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
+.+..+.+.. +.|+++++......+.+...++.+.++|+|+|++|.+|++. ++...++++++++.
T Consensus 47 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~-------------~~~~~~~~~~i~~~ 111 (200)
T cd04722 47 -EVLKEVAAET-DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL-------------AREDLELIRELREA 111 (200)
T ss_pred -cHHHHHHhhc-CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH-------------HHHHHHHHHHHHHh
Confidence 1233333333 78999999732222233334678888999999999988763 45677888888887
Q ss_pred c-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHH
Q 014581 217 A-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSI 295 (422)
Q Consensus 217 ~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i 295 (422)
. +.|+++|+++.... .. + .+.+.|+|.|.+.++..... .... .+.....+..+
T Consensus 112 ~~~~~v~~~~~~~~~~-~~-~-~~~~~g~d~i~~~~~~~~~~------------------~~~~-----~~~~~~~~~~~ 165 (200)
T cd04722 112 VPDVKVVVKLSPTGEL-AA-A-AAEEAGVDEVGLGNGGGGGG------------------GRDA-----VPIADLLLILA 165 (200)
T ss_pred cCCceEEEEECCCCcc-ch-h-hHHHcCCCEEEEcCCcCCCC------------------CccC-----chhHHHHHHHH
Confidence 7 89999999875432 11 1 16789999999888654310 0000 01112233333
Q ss_pred HHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 296 AKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 296 ~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
++.. ++||+++|||.+++++.+++.+|||+|++||
T Consensus 166 ~~~~-------~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 166 KRGS-------KVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HhcC-------CCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 3332 7999999999999999999999999999986
No 75
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.53 E-value=1.3e-12 Score=129.80 Aligned_cols=211 Identities=23% Similarity=0.274 Sum_probs=135.0
Q ss_pred CCCcceEe-CCeecCCCceecCCCCCCCHHHHHHHHHc-CCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccc
Q 014581 44 EPDLSITV-NGLQMPNPFVIGSGPPGTNYTVMKRAFDE-GWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG 121 (422)
Q Consensus 44 ~~dL~~~~-~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~-G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~G 121 (422)
++++++.+ .+++|+-||+-|++-...+.++...+.+. |+|++. +
T Consensus 23 dv~~~~~~~~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih-~--------------------------------- 68 (352)
T PF00478_consen 23 DVSLSTKLTRNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIH-R--------------------------------- 68 (352)
T ss_dssp G-BEEEESSTSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEE-S---------------------------------
T ss_pred heECcccccCCEeecCceEecCccccchHHHHHHHHHhcCCceec-C---------------------------------
Confidence 34555556 68999999999996666788999999887 456442 1
Q ss_pred cccccccCCChHHHHHHHHHHHHhhC--------CCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcc
Q 014581 122 WENIELISDRPLETMLKEFKQLKALY--------PDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPER 193 (422)
Q Consensus 122 l~n~~~~s~~~~e~~l~~i~~~k~~~--------~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~ 193 (422)
|. +.++..+.++++|+.+ ....+.++++ ..+++ .+.++.+.++|+|+|.|+.+.-|.
T Consensus 69 --~~------~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg--~~~~~-~er~~~L~~agvD~ivID~a~g~s---- 133 (352)
T PF00478_consen 69 --NM------SIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVG--TRDDD-FERAEALVEAGVDVIVIDSAHGHS---- 133 (352)
T ss_dssp --SS------CHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEE--SSTCH-HHHHHHHHHTT-SEEEEE-SSTTS----
T ss_pred --CC------CHHHHHHHHhhhccccccccccccccceEEEEec--CCHHH-HHHHHHHHHcCCCEEEccccCccH----
Confidence 00 1455555555555422 1346778885 23333 445566777899999998643222
Q ss_pred ccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCC
Q 014581 194 KMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEG 272 (422)
Q Consensus 194 ~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~ 272 (422)
+.+.+.++.+|+.. ++||++- |+. ..+.++.|.++|||+|.+.=..+. + -+-+.
T Consensus 134 ----------~~~~~~ik~ik~~~~~~~viaG---NV~-T~e~a~~L~~aGad~vkVGiGpGs---i--CtTr~------ 188 (352)
T PF00478_consen 134 ----------EHVIDMIKKIKKKFPDVPVIAG---NVV-TYEGAKDLIDAGADAVKVGIGPGS---I--CTTRE------ 188 (352)
T ss_dssp ----------HHHHHHHHHHHHHSTTSEEEEE---EE--SHHHHHHHHHTT-SEEEESSSSST---T--BHHHH------
T ss_pred ----------HHHHHHHHHHHHhCCCceEEec---ccC-CHHHHHHHHHcCCCEEEEeccCCc---c--ccccc------
Confidence 34566778888776 5899873 333 367889999999999976422111 1 01011
Q ss_pred CCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 273 YSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 273 ~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
.-|. | .|+ +..|.++++...+ .++|||+.|||.++-|+.|+|.+|||+||+|+.|-
T Consensus 189 ---v~Gv-G---~PQ-~tAv~~~a~~a~~----~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llA 244 (352)
T PF00478_consen 189 ---VTGV-G---VPQ-LTAVYECAEAARD----YGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLA 244 (352)
T ss_dssp ---HHSB-S---CTH-HHHHHHHHHHHHC----TTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTT
T ss_pred ---cccc-C---CcH-HHHHHHHHHHhhh----ccCceeecCCcCcccceeeeeeecccceeechhhc
Confidence 0111 1 143 3567788877653 27999999999999999999999999999998774
No 76
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.52 E-value=3.6e-13 Score=134.58 Aligned_cols=140 Identities=20% Similarity=0.212 Sum_probs=114.6
Q ss_pred cChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCC
Q 014581 201 QDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYS 280 (422)
Q Consensus 201 ~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~s 280 (422)
.+|..+++...++++.+..|+++|-... .+-++.+.+.|+++|+++|+... .. .+|.
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~kGV~~----~~D~~~a~~tg~~~I~vsnhggr--ql----------------D~g~- 257 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLKGILA----PEDAAGAGGTGADGIEVSNHGGR--QL----------------DWGI- 257 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHhCCCC----HHHHHhhccCCceEEEEEcCCCc--cc----------------cCCC-
Confidence 4778888999999999999999985432 34567788999999999997642 11 2443
Q ss_pred CCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh----hh----HHHHHHHH
Q 014581 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----GY----GLVKRLCE 352 (422)
Q Consensus 281 G~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----Gp----~~i~~i~~ 352 (422)
.+.+.+.++++++++ +++|+++|||+++.|+.|+|++||++|++|+.+++. |. ..++-|.+
T Consensus 258 ------st~~~L~ei~~av~~-----~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~ 326 (360)
T COG1304 258 ------STADSLPEIVEAVGD-----RIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIRK 326 (360)
T ss_pred ------ChHHHHHHHHHHhCC-----CeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356788899999864 699999999999999999999999999999999872 22 35888999
Q ss_pred HHHHHHHHcCCCCHHHhhcCCc
Q 014581 353 ELKDFMKMHNFSSIEDFRGASI 374 (422)
Q Consensus 353 ~l~~~m~~~G~~si~d~~G~~~ 374 (422)
+|+..|...|.++|+|++...+
T Consensus 327 El~~~M~L~G~~~i~el~~~~l 348 (360)
T COG1304 327 ELKIAMALTGAKNIEELKRVPL 348 (360)
T ss_pred HHHHHHHhcCCCcHHHhccCce
Confidence 9999999999999999987644
No 77
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.45 E-value=1.2e-11 Score=117.42 Aligned_cols=189 Identities=22% Similarity=0.312 Sum_probs=128.3
Q ss_pred CCCceecCCCCCCCHHHHHHHHHcCC-cEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHH
Q 014581 57 PNPFVIGSGPPGTNYTVMKRAFDEGW-GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLET 135 (422)
Q Consensus 57 ~nPi~~AAg~~~~~~~~~~~~~~~G~-Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~ 135 (422)
++|++.|++....+.++.+.+.++|. |++ . +++. + .+.
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i-----~----------~~~~------------------~--------~~~ 40 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFI-----G----------AGYL------------------T--------PEA 40 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCcccc-----C----------CCCC------------------C--------HHH
Confidence 58999998777688999999988763 433 1 1110 0 345
Q ss_pred HHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhh
Q 014581 136 MLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINA 215 (422)
Q Consensus 136 ~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~ 215 (422)
+.+.++++++.. +.|+.+++........+.+.++.+.++|+|+|.++...+ .++++.+++
T Consensus 41 ~~~~~~~i~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~ 100 (236)
T cd04730 41 LRAEIRKIRALT-DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKA 100 (236)
T ss_pred HHHHHHHHHHhc-CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHH
Confidence 555666666543 567888886321102456677778888999999875311 123444443
Q ss_pred ccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHH
Q 014581 216 KATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSI 295 (422)
Q Consensus 216 ~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i 295 (422)
.++++++++.+ .+.++.+.+.|+|+|.+.+... +|..++.. +..++.++++
T Consensus 101 -~~i~~i~~v~~-----~~~~~~~~~~gad~i~~~~~~~----------------------~G~~~~~~-~~~~~~i~~i 151 (236)
T cd04730 101 -AGIKVIPTVTS-----VEEARKAEAAGADALVAQGAEA----------------------GGHRGTFD-IGTFALVPEV 151 (236)
T ss_pred -cCCEEEEeCCC-----HHHHHHHHHcCCCEEEEeCcCC----------------------CCCCCccc-cCHHHHHHHH
Confidence 26888887542 3557778889999998776421 11111110 2235677888
Q ss_pred HHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 296 AKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 296 ~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++.+ ++||++.|||.+++|+.+++.+|||+|+++|+++..
T Consensus 152 ~~~~-------~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~ 191 (236)
T cd04730 152 RDAV-------DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred HHHh-------CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcC
Confidence 8765 799999999999999999999999999999999875
No 78
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.45 E-value=1.4e-11 Score=123.06 Aligned_cols=193 Identities=22% Similarity=0.286 Sum_probs=116.9
Q ss_pred eecCCCceecCCCCCCCHHHHHHHHHc-CCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCCh
Q 014581 54 LQMPNPFVIGSGPPGTNYTVMKRAFDE-GWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRP 132 (422)
Q Consensus 54 l~l~nPi~~AAg~~~~~~~~~~~~~~~-G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~ 132 (422)
+.++.||+.+.+....+.+...+..++ |+|++-.... +
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~-----------------------------------------~ 46 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGL-----------------------------------------T 46 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTS-----------------------------------------S
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeecccccc-----------------------------------------C
Confidence 346889999987777889988888887 4675532110 0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCC-CHHHH-----------------------HHHHHHHHHhCCCEEEEccCCCC
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEY-NKAAW-----------------------EELIDRVEETGIDAIEVNFSCPH 188 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~-~~~~~-----------------------~~~a~~~~~aGaD~iElN~scP~ 188 (422)
.+.+.++|+++++.. +.|+.+++.... ..... .+..+.+.+.+++.+.+.++.|.
T Consensus 47 ~~~l~~~i~~~~~~t-~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~ 125 (330)
T PF03060_consen 47 PEQLREEIRKIRALT-DKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP 125 (330)
T ss_dssp HHHHHHHHHHHHHH--SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-
T ss_pred hHHHHHHHHHHHhhc-cccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccch
Confidence 345555677777654 569999997322 22221 01111222234558888777663
Q ss_pred CCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCC
Q 014581 189 GMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEP 268 (422)
Q Consensus 189 ~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~ 268 (422)
. ++++.+++. ++.++...+ + .+.|+++.++|+|+|++-+.-
T Consensus 126 ~------------------~~i~~l~~~-gi~v~~~v~----s-~~~A~~a~~~G~D~iv~qG~e--------------- 166 (330)
T PF03060_consen 126 P------------------EVIERLHAA-GIKVIPQVT----S-VREARKAAKAGADAIVAQGPE--------------- 166 (330)
T ss_dssp H------------------HHHHHHHHT-T-EEEEEES----S-HHHHHHHHHTT-SEEEEE-TT---------------
T ss_pred H------------------HHHHHHHHc-CCccccccC----C-HHHHHHhhhcCCCEEEEeccc---------------
Confidence 1 245555544 788888764 2 567889999999999988642
Q ss_pred CCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 269 CVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 269 ~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.||+.|..+. ..+..+.++++.+ ++|||+.|||.+++++..+|.+||++||+||.|+.-
T Consensus 167 -------AGGH~g~~~~-~~~~L~~~v~~~~-------~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 167 -------AGGHRGFEVG-STFSLLPQVRDAV-------DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLAT 225 (330)
T ss_dssp -------SSEE---SSG--HHHHHHHHHHH--------SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTS
T ss_pred -------cCCCCCcccc-ceeeHHHHHhhhc-------CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEec
Confidence 2555552221 2345677888876 799999999999999999999999999999999974
No 79
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.28 E-value=3.3e-10 Score=111.42 Aligned_cols=194 Identities=13% Similarity=0.041 Sum_probs=124.8
Q ss_pred CCCceecCCCCCCC-HHHHHHHHHc-CCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHH
Q 014581 57 PNPFVIGSGPPGTN-YTVMKRAFDE-GWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLE 134 (422)
Q Consensus 57 ~nPi~~AAg~~~~~-~~~~~~~~~~-G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e 134 (422)
+.||+-+.+.+..+ .+...+..++ |+|++-... . +.+
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~---------------------------------~--------~~e 40 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALAL---------------------------------M--------RGE 40 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCC---------------------------------C--------CHH
Confidence 57899888777655 6777777666 345332110 0 145
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHh
Q 014581 135 TMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWIN 214 (422)
Q Consensus 135 ~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr 214 (422)
+..++|+++++...++|+.+++..-.....+.+..+.+.+.+++.+.+.++.|. . ++.++
T Consensus 41 ~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~----------------~----~~~lk 100 (320)
T cd04743 41 QVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPD----------------Q----ARALE 100 (320)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChH----------------H----HHHHH
Confidence 556677788775458999999952111222344556666778999988765442 1 24444
Q ss_pred hccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHH
Q 014581 215 AKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMS 294 (422)
Q Consensus 215 ~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~ 294 (422)
+. .+.++...+ ....+++++++|+|+|++-+.-. ||+.|+ +.. +-.+.+
T Consensus 101 ~~-Gi~v~~~v~-----s~~~A~~a~~~GaD~vVaqG~EA----------------------GGH~G~-~~t--~~L~~~ 149 (320)
T cd04743 101 AI-GISTYLHVP-----SPGLLKQFLENGARKFIFEGREC----------------------GGHVGP-RSS--FVLWES 149 (320)
T ss_pred HC-CCEEEEEeC-----CHHHHHHHHHcCCCEEEEecCcC----------------------cCCCCC-CCc--hhhHHH
Confidence 43 778886653 25678999999999999887532 444332 111 112333
Q ss_pred HHHHhhccC---CCCCceEEEecCCCCHHHHHHHHHhCC--------CEEEEhhHHHhh
Q 014581 295 IAKMMKSEF---NDKDYSLSGIGGVETGGDAAEFILLGA--------NTVQVCTGVMMH 342 (422)
Q Consensus 295 i~~~~~~~~---~~~~ipIIa~GGI~s~~da~~~l~aGA--------d~V~vgtall~~ 342 (422)
+.+.+.... ...++|||+.|||.+++.+..++.+|| ++|||||.|+..
T Consensus 150 v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t 208 (320)
T cd04743 150 AIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred HHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcc
Confidence 333331100 012699999999999999999999988 899999999974
No 80
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.6e-11 Score=119.01 Aligned_cols=163 Identities=20% Similarity=0.209 Sum_probs=133.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC-CccccccccccChhHHHHHHHHHhhccCccEEEEECC-
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM-PERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP- 227 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~-~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~- 227 (422)
.-++.+++ ..+++-..+.|+.+.+ .+.++.+|++||..- ...+||+++..+++.+..|+..+.+..++|+.+|++.
T Consensus 82 ~rlilQ~g-T~sa~lA~e~A~lv~n-DvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L 159 (477)
T KOG2334|consen 82 SRLILQIG-TASAELALEAAKLVDN-DVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLL 159 (477)
T ss_pred CeEEEEec-CCcHHHHHHHHHHhhc-ccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEec
Confidence 46888996 6677777888888876 488999999999853 4568999999999999999999999889999999983
Q ss_pred -CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCC
Q 014581 228 -NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDK 306 (422)
Q Consensus 228 -~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~ 306 (422)
+.++..++++.+.+.|+.+|.+|.++.. . ++ -+|...+.++++++.+.
T Consensus 160 ~s~edtL~lv~ri~~tgi~ai~vh~rt~d-------~-r~-----------------~~~~~~~~i~~i~~~~~------ 208 (477)
T KOG2334|consen 160 DSKEDTLKLVKRICATGIAAITVHCRTRD-------E-RN-----------------QEPATKDYIREIAQACQ------ 208 (477)
T ss_pred CCcccHHHHHHHHHhcCCceEEEEeeccc-------c-CC-----------------CCCCCHHHHHHHHHHhc------
Confidence 3456789999999999999999997642 1 11 12444577888888873
Q ss_pred CceEEEecCCCC---HHHHHHHHH-hCCCEEEEhhHHHhhhhHH
Q 014581 307 DYSLSGIGGVET---GGDAAEFIL-LGANTVQVCTGVMMHGYGL 346 (422)
Q Consensus 307 ~ipIIa~GGI~s---~~da~~~l~-aGAd~V~vgtall~~Gp~~ 346 (422)
.+|||++||+.+ +.|+.++.+ .|++.||++++...+ |.+
T Consensus 209 ~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n-~Si 251 (477)
T KOG2334|consen 209 MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN-PSI 251 (477)
T ss_pred cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC-Cce
Confidence 599999999999 889999875 899999999988875 544
No 81
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.24 E-value=2.4e-10 Score=109.24 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=114.5
Q ss_pred EEEeCCC-CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccc----------cChhHHHHHHHHHhhccCccE
Q 014581 153 IASIMEE-YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVG----------QDCRLLEEVCGWINAKATVPV 221 (422)
Q Consensus 153 i~si~~~-~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~----------~~~~~v~~iv~~vr~~~~iPv 221 (422)
+.-+..| .+.+.|.+.++.++++|+|+||+++ |.+++..+ |..+. .+.+..-++++.+|+.+++|+
T Consensus 3 i~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~D-G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv 79 (242)
T cd04724 3 IPYITAGDPDLETTLEILKALVEAGADIIELGI--PFSDPVAD-GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPI 79 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCE
Confidence 3344434 3778999999999999999999997 55543322 11111 123466788888888778886
Q ss_pred EE--EECCCCCC-hHHHHHHHHHcCCCEEEEecCCcc----------------cccccccC----CCCCCC-CCCC----
Q 014581 222 WA--KMTPNITD-ITEPARVALRSGSEGVSAINTIMS----------------VMGIDLKT----LRPEPC-VEGY---- 273 (422)
Q Consensus 222 ~v--Kl~~~~~~-~~~~a~~l~~aGadgi~v~n~~~~----------------~~~id~e~----~~p~~~-~~~~---- 273 (422)
.+ +.+|.+.. +.++++.+.++|++++++..--.. ...+.+.+ .+.... ..++
T Consensus 80 ~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~ 159 (242)
T cd04724 80 VLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYV 159 (242)
T ss_pred EEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEE
Confidence 65 77765443 578899999999999987321000 00011111 010000 0011
Q ss_pred CccCCCCCCC-cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 274 STPGGYSCKA-VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 274 ~~~gG~sG~~-i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+..|+..+.. ..+...+.++++++.. ++||+..|||.+.+++.++..+ ||+|.+||+++..
T Consensus 160 s~~g~tG~~~~~~~~~~~~i~~lr~~~-------~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~ 221 (242)
T cd04724 160 SRTGVTGARTELPDDLKELIKRIRKYT-------DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKI 221 (242)
T ss_pred eCCCCCCCccCCChhHHHHHHHHHhcC-------CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHH
Confidence 1122222222 2344557778887753 7999999999999999999999 9999999999753
No 82
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.24 E-value=6.1e-11 Score=113.56 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=119.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT 230 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~ 230 (422)
=||.-+. ++ +.|+.++++|+|.|-+|..||..... ..|.+..++|+.++ ++++.+++||+.|..-+.
T Consensus 19 gvimdv~---~~----~~a~iae~~g~~~v~~~~~~psd~~~-~gg~~Rm~~p~~I~----aIk~~V~iPVigk~Righ- 85 (293)
T PRK04180 19 GVIMDVV---NA----EQAKIAEEAGAVAVMALERVPADIRA-AGGVARMADPKMIE----EIMDAVSIPVMAKARIGH- 85 (293)
T ss_pred CeEEEeC---CH----HHHHHHHHhChHHHHHccCCCchHhh-cCCeeecCCHHHHH----HHHHhCCCCeEEeehhhH-
Confidence 3666664 23 46788899999999999999985322 34888889998877 455556999999987653
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCccccc-ccccC--C-CCCC-C-----------CCCCC----c---------------
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMG-IDLKT--L-RPEP-C-----------VEGYS----T--------------- 275 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~-id~e~--~-~p~~-~-----------~~~~~----~--------------- 275 (422)
..-|+.+.++|+|.|..+.+...... +++.+ + .|.. + ..|.. +
T Consensus 86 --~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~ 163 (293)
T PRK04180 86 --FVEAQILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHM 163 (293)
T ss_pred --HHHHHHHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHH
Confidence 34588899999999976654322100 11100 0 0000 0 00110 0
Q ss_pred ---------cCCCCCCC------cchhHHHHHHHHHHHhhccCCCCCceEE--EecCCCCHHHHHHHHHhCCCEEEEhhH
Q 014581 276 ---------PGGYSCKA------VHPIALGKVMSIAKMMKSEFNDKDYSLS--GIGGVETGGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 276 ---------~gG~sG~~------i~p~al~~v~~i~~~~~~~~~~~~ipII--a~GGI~s~~da~~~l~aGAd~V~vgta 338 (422)
..||.... .....++.|+++++.. ++||+ +.|||.|++|+.+++.+||++|.++|+
T Consensus 164 r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-------~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSa 236 (293)
T PRK04180 164 RQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG-------RLPVVNFAAGGIATPADAALMMQLGADGVFVGSG 236 (293)
T ss_pred HHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-------CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHH
Confidence 01111000 0122356666776654 79998 999999999999999999999999999
Q ss_pred HHh--hhhHHHHHHHHHHHHH
Q 014581 339 VMM--HGYGLVKRLCEELKDF 357 (422)
Q Consensus 339 ll~--~Gp~~i~~i~~~l~~~ 357 (422)
++. +.....+++.+.+..|
T Consensus 237 I~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 237 IFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred hhcCCCHHHHHHHHHHHHHHc
Confidence 985 3233456666666555
No 83
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.22 E-value=8.2e-10 Score=115.68 Aligned_cols=140 Identities=18% Similarity=0.209 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARV 238 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~ 238 (422)
..+++ .+.++.+.++|+|.|+++....++ ....+.++++|+.. ++||+++ ++.+ .+-++.
T Consensus 238 ~~~~~-~~~~~~l~~ag~d~i~id~a~G~s--------------~~~~~~i~~ik~~~~~~~v~aG---~V~t-~~~a~~ 298 (495)
T PTZ00314 238 TRPED-IERAAALIEAGVDVLVVDSSQGNS--------------IYQIDMIKKLKSNYPHVDIIAG---NVVT-ADQAKN 298 (495)
T ss_pred CCHHH-HHHHHHHHHCCCCEEEEecCCCCc--------------hHHHHHHHHHHhhCCCceEEEC---CcCC-HHHHHH
Confidence 34555 566777888999999999752221 22456788888775 6888884 3333 567889
Q ss_pred HHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC
Q 014581 239 ALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET 318 (422)
Q Consensus 239 l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s 318 (422)
+.++|+|+|.+....++ + .+.+. ..+... |. +..+.++++.+.+ .++|||+.|||.+
T Consensus 299 ~~~aGad~I~vg~g~Gs---~--~~t~~---------~~~~g~----p~-~~ai~~~~~~~~~----~~v~vIadGGi~~ 355 (495)
T PTZ00314 299 LIDAGADGLRIGMGSGS---I--CITQE---------VCAVGR----PQ-ASAVYHVARYARE----RGVPCIADGGIKN 355 (495)
T ss_pred HHHcCCCEEEECCcCCc---c--cccch---------hccCCC----Ch-HHHHHHHHHHHhh----cCCeEEecCCCCC
Confidence 99999999987432211 0 00000 011111 22 2445556555432 2799999999999
Q ss_pred HHHHHHHHHhCCCEEEEhhHHHh
Q 014581 319 GGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 319 ~~da~~~l~aGAd~V~vgtall~ 341 (422)
+.|+.+++.+||++||+||.|..
T Consensus 356 ~~di~kAla~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 356 SGDICKALALGADCVMLGSLLAG 378 (495)
T ss_pred HHHHHHHHHcCCCEEEECchhcc
Confidence 99999999999999999998843
No 84
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.22 E-value=4.1e-10 Score=112.32 Aligned_cols=193 Identities=23% Similarity=0.329 Sum_probs=125.7
Q ss_pred CeecCCCceecCCCCCCCHHHHHHHHHc-CCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCC
Q 014581 53 GLQMPNPFVIGSGPPGTNYTVMKRAFDE-GWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDR 131 (422)
Q Consensus 53 Gl~l~nPi~~AAg~~~~~~~~~~~~~~~-G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~ 131 (422)
++.++.||+-+.+..-.+.+...+..++ |.|++ .. .++.
T Consensus 10 ~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~i-----a~---------------------------~~~~-------- 49 (336)
T COG2070 10 LLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGII-----AS---------------------------GGLP-------- 49 (336)
T ss_pred ccCccCCeecCCccccCcHHHHHHHhccCCcccc-----cc---------------------------ccCC--------
Confidence 5688999999987776677777666665 34511 10 0011
Q ss_pred hHHHHHHHHHHHHhhCCCCeEE------------EEeCCCCCHHHHHHHHHHHHH-hCCCEEEEccCCCCCCCccccccc
Q 014581 132 PLETMLKEFKQLKALYPDKILI------------ASIMEEYNKAAWEELIDRVEE-TGIDAIEVNFSCPHGMPERKMGAA 198 (422)
Q Consensus 132 ~~e~~l~~i~~~k~~~~~~pvi------------~si~~~~~~~~~~~~a~~~~~-aGaD~iElN~scP~~~~~~~~G~~ 198 (422)
.+.+.+++++++..+ +.|.. +++. ......+.+.+..+.+ ++...+...++-|.
T Consensus 50 -~e~l~~~i~~~~~~~-~~p~~~~~f~~~~~~v~~~~l-~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~---------- 116 (336)
T COG2070 50 -AEQLRAEIRKIRALT-DKPFVANNFGSAPAPVNVNIL-VARRNAAEAGVDAIIEGAGVPVVSTSFGAPP---------- 116 (336)
T ss_pred -HHHHHHHHHHHHHhc-CCcchhcccccccccchhhee-cccccchHHhhhhHHhcCCCCEEeccCCCCc----------
Confidence 244445566666654 55632 2222 1111345555554444 36666665554221
Q ss_pred cccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCC
Q 014581 199 VGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGG 278 (422)
Q Consensus 199 l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG 278 (422)
.++++.+++ .++.++.++.. .+.|+++++.|+|+|++.+.- .||
T Consensus 117 --------~~~i~~~~~-~g~~v~~~v~~-----~~~A~~~~~~G~d~vI~~g~e----------------------AGG 160 (336)
T COG2070 117 --------AEFVARLKA-AGIKVIHSVIT-----VREALKAERAGADAVIAQGAE----------------------AGG 160 (336)
T ss_pred --------HHHHHHHHH-cCCeEEEEeCC-----HHHHHHHHhCCCCEEEecCCc----------------------CCC
Confidence 134555555 37788887643 678999999999999887642 355
Q ss_pred CCCC-CcchhHHHHHHHHHHHhhccCCCCC-ceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 279 YSCK-AVHPIALGKVMSIAKMMKSEFNDKD-YSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 279 ~sG~-~i~p~al~~v~~i~~~~~~~~~~~~-ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
+.|. ...+.....|.++++.+ + +|||+.|||.+++++..++++||++|||||.|+.
T Consensus 161 H~g~~~~~~~t~~Lv~ev~~~~-------~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 161 HRGGVDLEVSTFALVPEVVDAV-------DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred cCCCCCCCccHHHHHHHHHHHh-------cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 5442 12244557788898887 6 9999999999999999999999999999999986
No 85
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.21 E-value=1.8e-09 Score=103.99 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=117.9
Q ss_pred CeEEEEeCCC-CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccc-------ccccc--ccChhHHHHHHHHHhhc-cC
Q 014581 150 KILIASIMEE-YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERK-------MGAAV--GQDCRLLEEVCGWINAK-AT 218 (422)
Q Consensus 150 ~pvi~si~~~-~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~-------~G~~l--~~~~~~v~~iv~~vr~~-~~ 218 (422)
..++.-++.| .+.+...++++.+.+.|+|.|||.+ |.+++..+ .-.++ +-+.+.+-++++++|+. .+
T Consensus 10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~ 87 (256)
T TIGR00262 10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGV--PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN 87 (256)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 3577777655 4788899999999999999999986 44332221 01111 23456677888888866 68
Q ss_pred ccEEEEE--CCCCC-ChHHHHHHHHHcCCCEEEEecCCccc----------ccc------cccCC----CCCCC-CCCC-
Q 014581 219 VPVWAKM--TPNIT-DITEPARVALRSGSEGVSAINTIMSV----------MGI------DLKTL----RPEPC-VEGY- 273 (422)
Q Consensus 219 iPv~vKl--~~~~~-~~~~~a~~l~~aGadgi~v~n~~~~~----------~~i------d~e~~----~p~~~-~~~~- 273 (422)
+|++.=+ +|-+. ...++++.+.++|+|+++++.-.... .++ .+.+. +.... ..|+
T Consensus 88 ~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi 167 (256)
T TIGR00262 88 IPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV 167 (256)
T ss_pred CCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE
Confidence 8876322 22111 24778889999999998777421100 011 11110 00000 0111
Q ss_pred --CccCCCCCCC--cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 274 --STPGGYSCKA--VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 274 --~~~gG~sG~~--i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.+..|+.|.. +.+...+.++++++.. +.||+..|||.+++++.+++.+|||+|.+||+++.
T Consensus 168 y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~-------~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 168 YLVSRAGVTGARNRAASALNELVKRLKAYS-------AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred EEEECCCCCCCcccCChhHHHHHHHHHhhc-------CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 1123556642 4456678888888865 67999999999999999999999999999999975
No 86
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.20 E-value=9.7e-10 Score=106.12 Aligned_cols=172 Identities=16% Similarity=0.114 Sum_probs=116.1
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCc
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~i 219 (422)
++++.+. .+.|+.+.=+ -.+.++ ++++.+.|++.+.+|.. +..+++.+.++++...+. .+
T Consensus 66 i~~i~~~-~~~pv~~gGG-i~s~~d----~~~l~~~G~~~vvigs~-------------~~~~~~~~~~~~~~~~~~-~i 125 (258)
T PRK01033 66 IENLASE-CFMPLCYGGG-IKTLEQ----AKKIFSLGVEKVSINTA-------------ALEDPDLITEAAERFGSQ-SV 125 (258)
T ss_pred HHHHHHh-CCCCEEECCC-CCCHHH----HHHHHHCCCCEEEEChH-------------HhcCHHHHHHHHHHhCCC-cE
Confidence 4445443 2678765432 234544 33344669999998831 235678888888877432 35
Q ss_pred cEEEEECCC----------------CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 220 PVWAKMTPN----------------ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 220 Pv~vKl~~~----------------~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
++.+++... -.+..++++.+.+.|++.+++++.... |.++|+
T Consensus 126 ~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~---------------------G~~~G~- 183 (258)
T PRK01033 126 VVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRD---------------------GTMKGY- 183 (258)
T ss_pred EEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCC---------------------CCcCCC-
Confidence 566654322 123678999999999999999875421 334443
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHH-HhCCCEEEEhhHHHhhhhHH---HHHHHHHHHHHHH
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFI-LLGANTVQVCTGVMMHGYGL---VKRLCEELKDFMK 359 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l-~aGAd~V~vgtall~~Gp~~---i~~i~~~l~~~m~ 359 (422)
.++.++++++.. ++|||++|||.+.+|+.+++ ..|+++|.+|+++.+.|... .+.....++.+|.
T Consensus 184 ----d~~~i~~~~~~~-------~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~~~~~~~~~~~~~~~~~~~ 252 (258)
T PRK01033 184 ----DLELLKSFRNAL-------KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGVYKAVLINYPNGDEKEELL 252 (258)
T ss_pred ----CHHHHHHHHhhC-------CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCcccccccccccHHHHHHHHH
Confidence 356777787765 79999999999999999999 79999999999999875432 2333444556666
Q ss_pred HcCCC
Q 014581 360 MHNFS 364 (422)
Q Consensus 360 ~~G~~ 364 (422)
.+|+.
T Consensus 253 ~~~~~ 257 (258)
T PRK01033 253 KAGIP 257 (258)
T ss_pred HcCCC
Confidence 66654
No 87
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.19 E-value=9.9e-10 Score=115.04 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHc
Q 014581 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRS 242 (422)
Q Consensus 163 ~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~a 242 (422)
++..+.++.+.++|+|.|++.. .|. ..+.+.+.++++|+....++.|+- .++.. .+-++.|.++
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~--a~g------------~~~~~~~~i~~ir~~~~~~~~V~a-GnV~t-~e~a~~li~a 304 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDS--SEG------------YSEWQKRTLDWIREKYGDSVKVGA-GNVVD-REGFRYLAEA 304 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecC--ccc------------ccHHHHHHHHHHHHhCCCCceEEe-ccccC-HHHHHHHHHc
Confidence 3456677778889999999982 221 113355778888887655566654 33433 5678899999
Q ss_pred CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhc---cCCCCCceEEEecCCCCH
Q 014581 243 GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKS---EFNDKDYSLSGIGGVETG 319 (422)
Q Consensus 243 Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~---~~~~~~ipIIa~GGI~s~ 319 (422)
|||+|.+.+..+. + -+-+.. ...|. | .+..|.+++++..+ +.+ .++|||+.|||+++
T Consensus 305 GAd~I~vg~g~Gs---~--c~tr~~-------~~~g~------~-~~~ai~~~~~a~~~~~~~~g-~~~~viadgGir~~ 364 (502)
T PRK07107 305 GADFVKVGIGGGS---I--CITREQ-------KGIGR------G-QATALIEVAKARDEYFEETG-VYIPICSDGGIVYD 364 (502)
T ss_pred CCCEEEECCCCCc---C--cccccc-------cCCCc------c-HHHHHHHHHHHHHHHHhhcC-CcceEEEcCCCCch
Confidence 9999998765432 1 111111 01121 2 34566677665421 111 14999999999999
Q ss_pred HHHHHHHHhCCCEEEEhhHHH
Q 014581 320 GDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 320 ~da~~~l~aGAd~V~vgtall 340 (422)
.|+.|+|++|||+||+|+.+-
T Consensus 365 gdi~KAla~GA~~vm~G~~~a 385 (502)
T PRK07107 365 YHMTLALAMGADFIMLGRYFA 385 (502)
T ss_pred hHHHHHHHcCCCeeeeChhhh
Confidence 999999999999999999874
No 88
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=99.19 E-value=8e-09 Score=97.05 Aligned_cols=219 Identities=17% Similarity=0.169 Sum_probs=134.0
Q ss_pred EeCCeecCCCceecCCCCCCCHHHHHHHHH-cCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccccccccc
Q 014581 50 TVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELI 128 (422)
Q Consensus 50 ~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~-~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~ 128 (422)
++.|.+|++.+++++|-. .+.+.+++..+ +|.-.|++ ..+ |.. . .+.+
T Consensus 2 ~i~~~~~~SRl~~Gtgky-~s~~~~~~ai~aSg~~ivTv---a~r---------R~~-~---------------~~~~-- 50 (248)
T cd04728 2 TIGGKTFSSRLLLGTGKY-PSPAIMKEAIEASGAEIVTV---ALR---------RVN-I---------------GDPG-- 50 (248)
T ss_pred eECCEEeecceEEecCCC-CCHHHHHHHHHHhCCCEEEE---EEE---------ecc-c---------------CCCC--
Confidence 678999999999999988 56777766665 68886643 221 110 0 0000
Q ss_pred CCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCCEEEEccC-CCCCCCccccccccccChhHH
Q 014581 129 SDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFS-CPHGMPERKMGAAVGQDCRLL 206 (422)
Q Consensus 129 s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a-GaD~iElN~s-cP~~~~~~~~G~~l~~~~~~v 206 (422)
.+.+++.|+. .+..+..|..++++.++....|+...++ |-|.|-|.+- .|.+ +..|+..+
T Consensus 51 ----~~~~~~~i~~-----~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~---------Llpd~~~t 112 (248)
T cd04728 51 ----GESFLDLLDK-----SGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKT---------LLPDPIET 112 (248)
T ss_pred ----cchHHhhccc-----cCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccc---------cccCHHHH
Confidence 1122222221 1345777787778999999999988876 6788888763 2322 22333333
Q ss_pred HHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 207 EEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
-+-.+.+.+. +.-++.-++ +-...++++.++|++.|-..+...+ +.-|++ .
T Consensus 113 v~aa~~L~~~-Gf~vlpyc~----dd~~~ar~l~~~G~~~vmPlg~pIG-------------------sg~Gi~----~- 163 (248)
T cd04728 113 LKAAEILVKE-GFTVLPYCT----DDPVLAKRLEDAGCAAVMPLGSPIG-------------------SGQGLL----N- 163 (248)
T ss_pred HHHHHHHHHC-CCEEEEEeC----CCHHHHHHHHHcCCCEeCCCCcCCC-------------------CCCCCC----C-
Confidence 2222222111 222332223 3356899999999998822111100 001221 1
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh-hhhH-HHHHHHHHHH
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM-HGYG-LVKRLCEELK 355 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~-~Gp~-~i~~i~~~l~ 355 (422)
.+.|+.+++.. ++|||+.|||.+++|+.+++++|||+|.++|++.. ..|. ..+.+...++
T Consensus 164 --~~~I~~I~e~~-------~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 164 --PYNLRIIIERA-------DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred --HHHHHHHHHhC-------CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 35566676653 79999999999999999999999999999999986 2243 3455555544
No 89
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.18 E-value=2.4e-09 Score=96.75 Aligned_cols=163 Identities=23% Similarity=0.261 Sum_probs=100.2
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCCH-HH----HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 138 KEFKQLKALYPDKILIASIMEEYNK-AA----WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~~~-~~----~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
+.|+.+|+.. +.|||.=+...+.. +- ..+-++.+.++|+|.|-++.- .| .+|+.+.++++.
T Consensus 22 ~dI~aik~~v-~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT------~R-------~Rp~~l~~li~~ 87 (192)
T PF04131_consen 22 EDIRAIKKAV-DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDAT------DR-------PRPETLEELIRE 87 (192)
T ss_dssp HHHHHHHTTB--S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-S------SS-------S-SS-HHHHHHH
T ss_pred HHHHHHHHhc-CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecC------CC-------CCCcCHHHHHHH
Confidence 3566777765 88999877532211 11 123456677899999999852 11 345779999999
Q ss_pred HhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHH
Q 014581 213 INAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292 (422)
Q Consensus 213 vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v 292 (422)
+|+.. .+++.-++ ..+-+..+.++|+|.|.-+ ..+ .-.+ +.+ . ...++.|
T Consensus 88 i~~~~-~l~MADis-----t~ee~~~A~~~G~D~I~TT--LsG---YT~~------------t~~--~-----~pD~~lv 137 (192)
T PF04131_consen 88 IKEKY-QLVMADIS-----TLEEAINAAELGFDIIGTT--LSG---YTPY------------TKG--D-----GPDFELV 137 (192)
T ss_dssp HHHCT-SEEEEE-S-----SHHHHHHHHHTT-SEEE-T--TTT---SSTT------------STT--S-----SHHHHHH
T ss_pred HHHhC-cEEeeecC-----CHHHHHHHHHcCCCEEEcc--ccc---CCCC------------CCC--C-----CCCHHHH
Confidence 99987 78887654 2566888999999987322 211 1000 011 2 3356778
Q ss_pred HHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHH-HHHHHHHH
Q 014581 293 MSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL-VKRLCEEL 354 (422)
Q Consensus 293 ~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~-i~~i~~~l 354 (422)
+++++. ++|||+-|+|++++++.+++.+||++|.|||++-. |.. .+++.+.+
T Consensus 138 ~~l~~~--------~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr--P~~It~~F~~ai 190 (192)
T PF04131_consen 138 RELVQA--------DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR--PQEITKRFVDAI 190 (192)
T ss_dssp HHHHHT--------TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH---HHHHHHHHHHHC
T ss_pred HHHHhC--------CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC--HHHHHHHHHHHH
Confidence 777763 69999999999999999999999999999999875 543 45555443
No 90
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.18 E-value=3.5e-09 Score=107.66 Aligned_cols=214 Identities=16% Similarity=0.223 Sum_probs=119.7
Q ss_pred eecCCCceecCCC-CCCCHHHHHHHHHcC-CcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCC
Q 014581 54 LQMPNPFVIGSGP-PGTNYTVMKRAFDEG-WGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDR 131 (422)
Q Consensus 54 l~l~nPi~~AAg~-~~~~~~~~~~~~~~G-~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~ 131 (422)
+.++.|++.+++. .-.+.+.+.+..++| .|++-.+.+
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l----------------------------------------- 48 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGL----------------------------------------- 48 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCC-----------------------------------------
Confidence 3468899998876 346889998888875 454321111
Q ss_pred hHHHHHHHHHHHHhhCC-CCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccC---CCCCCCccccccccccChhHH
Q 014581 132 PLETMLKEFKQLKALYP-DKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFS---CPHGMPERKMGAAVGQDCRLL 206 (422)
Q Consensus 132 ~~e~~l~~i~~~k~~~~-~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~s---cP~~~~~~~~G~~l~~~~~~v 206 (422)
+++++.+.|+++++..+ +.|+.+|+.... +++...+.++.+.+.|+..+|.... .|.....+.-|.....+..
T Consensus 49 ~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~-- 126 (418)
T cd04742 49 PLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGR-- 126 (418)
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCccccccc--
Confidence 14566667778877555 789999997422 2222344566677779999887521 1110000000000000000
Q ss_pred HHHHHHHhhccCccEEEEEC-CCCC------ChHHHHHHHHHcC---------------CCEEEEecCCcccccccccCC
Q 014581 207 EEVCGWINAKATVPVWAKMT-PNIT------DITEPARVALRSG---------------SEGVSAINTIMSVMGIDLKTL 264 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~-~~~~------~~~~~a~~l~~aG---------------adgi~v~n~~~~~~~id~e~~ 264 (422)
+ .....|+.|++ +.+- -..++++++.+.| +|.|++- .-
T Consensus 127 --~------~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~E----------- 186 (418)
T cd04742 127 --V------QIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-AD----------- 186 (418)
T ss_pred --c------cccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-cc-----------
Confidence 0 01234666753 2111 1234445555555 6888765 21
Q ss_pred CCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCC-CCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 265 RPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFN-DKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 265 ~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~-~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.||+.|......-+..|.++++.+..+.+ ..++|||+.|||.|++++..++.+||++||+||.++.
T Consensus 187 -----------AGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fla 253 (418)
T cd04742 187 -----------SGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQC 253 (418)
T ss_pred -----------CCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence 24443321001112233334433311110 0159999999999999999999999999999999987
No 91
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.15 E-value=3.6e-09 Score=101.12 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=105.2
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhh-cc
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINA-KA 217 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~-~~ 217 (422)
.++++++.. +.|++++=+ -.+.++..++ .+.|+|.+.++.. +..+|+.+.++++.+.+ .+
T Consensus 62 ~i~~i~~~~-~~pv~~~GG-I~s~~d~~~~----l~~G~~~v~ig~~-------------~~~~p~~~~~i~~~~~~~~i 122 (243)
T cd04731 62 VVERVAEEV-FIPLTVGGG-IRSLEDARRL----LRAGADKVSINSA-------------AVENPELIREIAKRFGSQCV 122 (243)
T ss_pred HHHHHHHhC-CCCEEEeCC-CCCHHHHHHH----HHcCCceEEECch-------------hhhChHHHHHHHHHcCCCCE
Confidence 355555544 678886543 2355554333 3368999988743 23567888888887743 23
Q ss_pred CccEEEEECCC--------------CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 218 TVPVWAKMTPN--------------ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 218 ~iPv~vKl~~~--------------~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
-+++-+|...+ ..+..++++.+.+.|++.|++++..... +..|+
T Consensus 123 ~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g------------------~~~g~---- 180 (243)
T cd04731 123 VVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDG------------------TKKGY---- 180 (243)
T ss_pred EEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCC------------------CCCCC----
Confidence 44555553321 2246788999999999999998743210 01111
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHh-CCCEEEEhhHHHhhhh
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL-GANTVQVCTGVMMHGY 344 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~a-GAd~V~vgtall~~Gp 344 (422)
.++.+.++++.. ++|||++|||++++|+.+++.. |||+|++||+++....
T Consensus 181 ----~~~~i~~i~~~~-------~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~ 231 (243)
T cd04731 181 ----DLELIRAVSSAV-------NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEY 231 (243)
T ss_pred ----CHHHHHHHHhhC-------CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCC
Confidence 256677777654 7999999999999999999997 9999999999987643
No 92
>PRK00208 thiG thiazole synthase; Reviewed
Probab=99.14 E-value=2.3e-08 Score=94.07 Aligned_cols=217 Identities=17% Similarity=0.155 Sum_probs=133.8
Q ss_pred eEeCCeecCCCceecCCCCCCCHHHHHHHHH-cCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccc
Q 014581 49 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIEL 127 (422)
Q Consensus 49 ~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~-~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~ 127 (422)
.++.|.+|++.+++++|-. .+.+.+++..+ +|.-.|++ ..+ |+. . .+ .
T Consensus 2 l~i~~~~~~SRl~~Gtgky-~s~~~~~~ai~asg~~ivTv---alr---------R~~---~-------------~~-~- 50 (250)
T PRK00208 2 LTIAGKTFSSRLLLGTGKY-PSPQVMQEAIEASGAEIVTV---ALR---------RVN---L-------------GQ-G- 50 (250)
T ss_pred cEECCEEeeccceEecCCC-CCHHHHHHHHHHhCCCeEEE---EEE---------eec---C-------------CC-C-
Confidence 4689999999999999988 56776766665 68886643 221 110 0 00 0
Q ss_pred cCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCCEEEEccC-CCCCCCccccccccccChhH
Q 014581 128 ISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFS-CPHGMPERKMGAAVGQDCRL 205 (422)
Q Consensus 128 ~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a-GaD~iElN~s-cP~~~~~~~~G~~l~~~~~~ 205 (422)
-+.+++.|+. .+..+..|..++.+.++.+..|+...++ +-+.|-|.+- .|.+ +..|+.
T Consensus 51 -----~~~~~~~i~~-----~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~---------llpd~~- 110 (250)
T PRK00208 51 -----GDNLLDLLPP-----LGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKT---------LLPDPI- 110 (250)
T ss_pred -----cchHHhhccc-----cCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCC---------CCcCHH-
Confidence 1222222221 1446777887778999999999988875 5788887753 2332 122322
Q ss_pred HHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 206 LEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 206 v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
+.+++.++.+ +.-++--++ +-...++++.++|++.|--.+...+ +.-|++
T Consensus 111 --~tv~aa~~L~~~Gf~vlpyc~----~d~~~ak~l~~~G~~~vmPlg~pIG-------------------sg~gi~--- 162 (250)
T PRK00208 111 --ETLKAAEILVKEGFVVLPYCT----DDPVLAKRLEEAGCAAVMPLGAPIG-------------------SGLGLL--- 162 (250)
T ss_pred --HHHHHHHHHHHCCCEEEEEeC----CCHHHHHHHHHcCCCEeCCCCcCCC-------------------CCCCCC---
Confidence 2333333221 222221222 3367899999999998821111100 001221
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh-hhh-HHHHHHHHHHH
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM-HGY-GLVKRLCEELK 355 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~-~Gp-~~i~~i~~~l~ 355 (422)
. .+.++.+++.. ++|||..|||.+++|+.+++++|||+|.++|++.. ..| .+.+.+.+.++
T Consensus 163 -~---~~~i~~i~e~~-------~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 163 -N---PYNLRIIIEQA-------DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred -C---HHHHHHHHHhc-------CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 1 24466666653 79999999999999999999999999999999986 224 34555555554
No 93
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.12 E-value=2e-09 Score=112.94 Aligned_cols=146 Identities=21% Similarity=0.233 Sum_probs=97.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNIT 230 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~ 230 (422)
+.+.++ ..++. .+-++.+.++|+|.|-++. +|. ....+.+.++++|+.. +.+|+++- +.
T Consensus 239 vgaavg--~~~~~-~~r~~~l~~ag~d~i~iD~--~~g------------~~~~~~~~i~~ik~~~p~~~vi~g~---v~ 298 (505)
T PLN02274 239 VGAAIG--TRESD-KERLEHLVKAGVDVVVLDS--SQG------------DSIYQLEMIKYIKKTYPELDVIGGN---VV 298 (505)
T ss_pred EEEEEc--CCccH-HHHHHHHHHcCCCEEEEeC--CCC------------CcHHHHHHHHHHHHhCCCCcEEEec---CC
Confidence 444553 23333 4566778889999999885 442 1134667889999876 58888762 22
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
..+-|+.+.++|+|+|.+.+.... + .+ ++. ..+. |.+. ..++..+.++++.. ++||
T Consensus 299 -t~e~a~~a~~aGaD~i~vg~g~G~---~--~~-t~~--------~~~~-g~~~-~~~i~~~~~~~~~~-------~vpV 354 (505)
T PLN02274 299 -TMYQAQNLIQAGVDGLRVGMGSGS---I--CT-TQE--------VCAV-GRGQ-ATAVYKVASIAAQH-------GVPV 354 (505)
T ss_pred -CHHHHHHHHHcCcCEEEECCCCCc---c--cc-Ccc--------cccc-CCCc-ccHHHHHHHHHHhc-------CCeE
Confidence 256789999999999988653321 0 00 000 0111 1110 22444455555543 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
|+.|||.++.|+.++|.+||++||+||+|..
T Consensus 355 IadGGI~~~~di~kAla~GA~~V~vGs~~~~ 385 (505)
T PLN02274 355 IADGGISNSGHIVKALTLGASTVMMGSFLAG 385 (505)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEchhhcc
Confidence 9999999999999999999999999999975
No 94
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.11 E-value=1e-08 Score=98.97 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=114.2
Q ss_pred CeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccc-------cccccc--cChhHHHHHHHHHhhccCc
Q 014581 150 KILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERK-------MGAAVG--QDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 150 ~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~-------~G~~l~--~~~~~v~~iv~~vr~~~~i 219 (422)
..++.-++.|+ +.+...++++.+.+.|+|.|||.+ |.+++..+ .-.++. -+.+.+-++++.+|+..++
T Consensus 15 ~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~ 92 (263)
T CHL00200 15 CALIPFITAGDPDIVITKKALKILDKKGADIIELGI--PYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKA 92 (263)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC
Confidence 35777776554 788899999999999999999986 33332221 111121 2445677788888877788
Q ss_pred cEEEEECCC--CC-ChHHHHHHHHHcCCCEEEEecCCccc----------ccc------cccC----CCCCCC-CCCC--
Q 014581 220 PVWAKMTPN--IT-DITEPARVALRSGSEGVSAINTIMSV----------MGI------DLKT----LRPEPC-VEGY-- 273 (422)
Q Consensus 220 Pv~vKl~~~--~~-~~~~~a~~l~~aGadgi~v~n~~~~~----------~~i------d~e~----~~p~~~-~~~~-- 273 (422)
|+++-.--| +. ...++++.+.++|+|++.+..-.... .++ .+.+ .+.... ..|+
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIY 172 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 976432111 11 35678888999999999877421100 001 1111 000000 0011
Q ss_pred -CccCCCCCC--CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 274 -STPGGYSCK--AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 274 -~~~gG~sG~--~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
...-|..|. .+.....+.+.++++.. +.||...+||.+++++.++..+|||+|.+||+++.
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-------~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMT-------NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhc-------CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 012344443 23333345566666643 89999999999999999999999999999999964
No 95
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.11 E-value=1e-08 Score=98.04 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=111.4
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.|+.+++.. +.|||+=+..++ ..-++.++++|+|.|. | + .+ .+| +.+++..+|+..+
T Consensus 56 ~I~~Ik~~V-~iPVIGi~K~~~-----~~Ea~~L~eaGvDiID----a--T--~r-------~rP--~~~~~~~iK~~~~ 112 (283)
T cd04727 56 MIKEIMDAV-SIPVMAKVRIGH-----FVEAQILEALGVDMID----E--S--EV-------LTP--ADEEHHIDKHKFK 112 (283)
T ss_pred HHHHHHHhC-CCCeEEeeehhH-----HHHHHHHHHcCCCEEe----c--c--CC-------CCc--HHHHHHHHHHHcC
Confidence 466777665 899998886333 4446778889999994 1 1 11 123 5678888888778
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccc-----cccC-CCCCCCCCCCCccC--CCCCCCcchhHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGI-----DLKT-LRPEPCVEGYSTPG--GYSCKAVHPIALG 290 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~i-----d~e~-~~p~~~~~~~~~~g--G~sG~~i~p~al~ 290 (422)
.|++.-++ + .+-+..+.+.|+|.|--+...+. ..+ ++.+ ........+|.... +.. ...+..++
T Consensus 113 ~l~MAD~s----t-leEal~a~~~Gad~I~TTl~gyT-~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~--~~~~~d~e 184 (283)
T cd04727 113 VPFVCGAR----N-LGEALRRISEGAAMIRTKGEAGT-GNVVEAVRHMRAVNGEIRKLQSMSEEELYAVA--KEIQAPYE 184 (283)
T ss_pred CcEEccCC----C-HHHHHHHHHCCCCEEEecCCCCC-CcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh--cccCCCHH
Confidence 89986433 3 44577889999998843321111 000 0000 00000000111100 000 01123467
Q ss_pred HHHHHHHHhhccCCCCCceEE--EecCCCCHHHHHHHHHhCCCEEEEhhHHHh--hhhHHHHHHHHHHHHH
Q 014581 291 KVMSIAKMMKSEFNDKDYSLS--GIGGVETGGDAAEFILLGANTVQVCTGVMM--HGYGLVKRLCEELKDF 357 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipII--a~GGI~s~~da~~~l~aGAd~V~vgtall~--~Gp~~i~~i~~~l~~~ 357 (422)
.++++++.. ++||+ +.|||.+++++.+++.+||++|.++|+++. +.....+++.+.+..|
T Consensus 185 lLk~l~~~~-------~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 185 LVKETAKLG-------RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred HHHHHHHhc-------CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 788888765 79997 999999999999999999999999999986 3233466666655543
No 96
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.11 E-value=4.6e-09 Score=109.33 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHc
Q 014581 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRS 242 (422)
Q Consensus 164 ~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~a 242 (422)
+..+.++.+.++|+|.|.++...+|. +.+.+.+++||+.. ++||++ .++. ..+-++.|.++
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~--------------~~~~~~i~~i~~~~~~~~vi~---g~~~-t~~~~~~l~~~ 286 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQ--------------VKMISAIKAVRALDLGVPIVA---GNVV-SAEGVRDLLEA 286 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCc--------------HHHHHHHHHHHHHCCCCeEEE---eccC-CHHHHHHHHHh
Confidence 44567777888899999999876543 56788899998865 899998 3333 36788999999
Q ss_pred CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHH
Q 014581 243 GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDA 322 (422)
Q Consensus 243 Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da 322 (422)
|+|+|.+....+.. . +.+ ...|+ |. |. +..+.++++.... .++|||+.|||.++.|+
T Consensus 287 G~d~i~vg~g~Gs~--~---ttr---------~~~~~-g~---~~-~~a~~~~~~~~~~----~~~~viadGgi~~~~di 343 (475)
T TIGR01303 287 GANIIKVGVGPGAM--C---TTR---------MMTGV-GR---PQ-FSAVLECAAEARK----LGGHVWADGGVRHPRDV 343 (475)
T ss_pred CCCEEEECCcCCcc--c---cCc---------cccCC-CC---ch-HHHHHHHHHHHHH----cCCcEEEeCCCCCHHHH
Confidence 99999876543321 0 111 01111 11 22 3445556554432 17999999999999999
Q ss_pred HHHHHhCCCEEEEhhHH
Q 014581 323 AEFILLGANTVQVCTGV 339 (422)
Q Consensus 323 ~~~l~aGAd~V~vgtal 339 (422)
.|+|.+||++||+|+.|
T Consensus 344 ~kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 344 ALALAAGASNVMVGSWF 360 (475)
T ss_pred HHHHHcCCCEEeechhh
Confidence 99999999999999987
No 97
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.10 E-value=5.5e-09 Score=99.89 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=107.1
Q ss_pred HHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc
Q 014581 139 EFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
.|+++.+.. +.|+. +++|. +.++ ++++..+||+-+-++ +++..+|+.+.++++.+.+.+
T Consensus 66 ~i~~i~~~~-~~pv~--vgGGirs~ed----v~~~l~~Ga~kvviG-------------s~~l~~p~l~~~i~~~~~~~i 125 (241)
T PRK14024 66 LLAEVVGKL-DVKVE--LSGGIRDDES----LEAALATGCARVNIG-------------TAALENPEWCARVIAEHGDRV 125 (241)
T ss_pred HHHHHHHHc-CCCEE--EcCCCCCHHH----HHHHHHCCCCEEEEC-------------chHhCCHHHHHHHHHHhhhhE
Confidence 455555543 55655 44332 4444 344455799987655 234578999999998886654
Q ss_pred --CccE---EEEECCC---CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 218 --TVPV---WAKMTPN---ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 218 --~iPv---~vKl~~~---~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
.+++ .+|.... ..+..++++.+.+.|++.++++++... |.++|+ .+
T Consensus 126 ~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~---------------------g~~~G~-----d~ 179 (241)
T PRK14024 126 AVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKD---------------------GTLTGP-----NL 179 (241)
T ss_pred EEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCC---------------------CCccCC-----CH
Confidence 3455 4554321 124678999999999999999976532 334443 36
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH---hCCCEEEEhhHHHhhh
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL---LGANTVQVCTGVMMHG 343 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~---aGAd~V~vgtall~~G 343 (422)
+.++++++.. ++|||++|||.|.+|+.++.. .||++|++||+++...
T Consensus 180 ~~i~~i~~~~-------~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 180 ELLREVCART-------DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred HHHHHHHhhC-------CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 7778888765 799999999999999999975 4999999999999874
No 98
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.10 E-value=9.7e-09 Score=105.11 Aligned_cols=211 Identities=18% Similarity=0.208 Sum_probs=117.1
Q ss_pred eecCCCceecCCC-CCCCHHHHHHHHHcC-CcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCC
Q 014581 54 LQMPNPFVIGSGP-PGTNYTVMKRAFDEG-WGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDR 131 (422)
Q Consensus 54 l~l~nPi~~AAg~-~~~~~~~~~~~~~~G-~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~ 131 (422)
+.++.|++.+++. ...+.+.+.+..++| +|++-.+.+
T Consensus 15 lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l----------------------------------------- 53 (444)
T TIGR02814 15 YGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGL----------------------------------------- 53 (444)
T ss_pred hCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCC-----------------------------------------
Confidence 3468899998876 346889998888875 454422111
Q ss_pred hHHHHHHHHHHHHhhCCCCe-EEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccC---CCCCCCccccccccccChhHH
Q 014581 132 PLETMLKEFKQLKALYPDKI-LIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFS---CPHGMPERKMGAAVGQDCRLL 206 (422)
Q Consensus 132 ~~e~~l~~i~~~k~~~~~~p-vi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~s---cP~~~~~~~~G~~l~~~~~~v 206 (422)
+++++.+.|+++++..++.| +.+|+.... +++.-.+.++.+.+.++..+|.... .|.....+.-|.....+-.
T Consensus 54 ~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~v~~r~~G~~~~~~g~-- 131 (444)
T TIGR02814 54 PLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHRDADGR-- 131 (444)
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHHHHHHHHHHcCCCEEEeccccCCCcchhhhhhcccccccccc--
Confidence 14566667777777554546 999997422 2221123455566678999887532 2221000110100000000
Q ss_pred HHHHHHHhhccCccEEEEECC-C-----C-CChHHHHHHHHHcC---------------CCEEEEecCCcccccccccCC
Q 014581 207 EEVCGWINAKATVPVWAKMTP-N-----I-TDITEPARVALRSG---------------SEGVSAINTIMSVMGIDLKTL 264 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~~-~-----~-~~~~~~a~~l~~aG---------------adgi~v~n~~~~~~~id~e~~ 264 (422)
+ ....+|+.|++. . + .-..++++.+.+.| +|.|++- .
T Consensus 132 --~------~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~------------ 190 (444)
T TIGR02814 132 --V------VIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVE-A------------ 190 (444)
T ss_pred --c------cccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-c------------
Confidence 0 013466677531 1 0 01233444444444 5777653 1
Q ss_pred CCCCCCCCCCccCCCCCCCcchhHHHHHHHH---HHHhhccCC-CCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 265 RPEPCVEGYSTPGGYSCKAVHPIALGKVMSI---AKMMKSEFN-DKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 265 ~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i---~~~~~~~~~-~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
..||+.|.. + .+..+..+ ++.+.++++ ..++|||+.|||.|++++..++.+||++||+||.++
T Consensus 191 ----------EAGGHtg~~--~-~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 191 ----------DSGGHTDNR--P-LVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred ----------cCCCCCCCC--c-HHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 124443321 1 12233333 344321110 126899999999999999999999999999999998
Q ss_pred h
Q 014581 341 M 341 (422)
Q Consensus 341 ~ 341 (422)
.
T Consensus 258 a 258 (444)
T TIGR02814 258 C 258 (444)
T ss_pred h
Confidence 7
No 99
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.09 E-value=2.9e-09 Score=110.62 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc-cCccEEEEECCCCCChHHHHHHHH
Q 014581 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK-ATVPVWAKMTPNITDITEPARVAL 240 (422)
Q Consensus 162 ~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~-~~iPv~vKl~~~~~~~~~~a~~l~ 240 (422)
.+.+. -++.+.++|+|.|+++.+..+. ..+.+.++++|+. .++||+++-.. ..+-++.+.
T Consensus 223 ~~~~~-r~~~L~~aG~d~I~vd~a~g~~--------------~~~~~~i~~i~~~~~~~~vi~G~v~----t~~~a~~l~ 283 (450)
T TIGR01302 223 EFDKE-RAEALVKAGVDVIVIDSSHGHS--------------IYVIDSIKEIKKTYPDLDIIAGNVA----TAEQAKALI 283 (450)
T ss_pred hhHHH-HHHHHHHhCCCEEEEECCCCcH--------------hHHHHHHHHHHHhCCCCCEEEEeCC----CHHHHHHHH
Confidence 33444 4456677899999999764432 3466788888887 48999995332 356788999
Q ss_pred HcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHH
Q 014581 241 RSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGG 320 (422)
Q Consensus 241 ~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~ 320 (422)
++|+|+|.+..+.++ +. +.+.. ...|+ | .+..+.++++.... .++|||+.|||.++.
T Consensus 284 ~aGad~i~vg~g~G~---~~--~t~~~-------~~~g~------p-~~~~i~~~~~~~~~----~~vpviadGGi~~~~ 340 (450)
T TIGR01302 284 DAGADGLRVGIGPGS---IC--TTRIV-------AGVGV------P-QITAVYDVAEYAAQ----SGIPVIADGGIRYSG 340 (450)
T ss_pred HhCCCEEEECCCCCc---CC--cccee-------cCCCc------c-HHHHHHHHHHHHhh----cCCeEEEeCCCCCHH
Confidence 999999987643221 11 10000 01122 2 23456666665432 279999999999999
Q ss_pred HHHHHHHhCCCEEEEhhHHHh
Q 014581 321 DAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 321 da~~~l~aGAd~V~vgtall~ 341 (422)
|+.++|.+||++||+|+.|..
T Consensus 341 di~kAla~GA~~V~~G~~~a~ 361 (450)
T TIGR01302 341 DIVKALAAGADAVMLGSLLAG 361 (450)
T ss_pred HHHHHHHcCCCEEEECchhhc
Confidence 999999999999999999864
No 100
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.07 E-value=1.5e-08 Score=97.53 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=112.5
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHh-h--
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWIN-A-- 215 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr-~-- 215 (422)
.++++++.. +.|+++.=+ -.+.++..++ .+.|++.+.++.. +..+|+.+.++.+.+- +
T Consensus 65 ~i~~i~~~~-~ipv~~~GG-i~s~~~~~~~----l~~Ga~~Viigt~-------------~l~~p~~~~ei~~~~g~~~i 125 (253)
T PRK02083 65 VVERVAEQV-FIPLTVGGG-IRSVEDARRL----LRAGADKVSINSA-------------AVANPELISEAADRFGSQCI 125 (253)
T ss_pred HHHHHHHhC-CCCEEeeCC-CCCHHHHHHH----HHcCCCEEEEChh-------------HhhCcHHHHHHHHHcCCCCE
Confidence 455565544 678776553 2355554333 3369999988731 2356788888887752 1
Q ss_pred --ccC-------ccEEEEECCCCC----ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 216 --KAT-------VPVWAKMTPNIT----DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 216 --~~~-------iPv~vKl~~~~~----~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
..+ .|+.||++.... +..++++.+.+.|++.+++++.... |-.+|+
T Consensus 126 v~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~---------------------g~~~g~ 184 (253)
T PRK02083 126 VVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRD---------------------GTKNGY 184 (253)
T ss_pred EEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCC---------------------CCCCCc
Confidence 112 466788765432 3578889999999999988753211 111221
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH-hCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHc
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL-LGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMH 361 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~-aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~ 361 (422)
.++.++++++.. ++|||++|||.+.+|+.+++. .||++|++||++...... ++ ++.++|.+.
T Consensus 185 -----d~~~i~~~~~~~-------~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~-~~----~~~~~~~~~ 247 (253)
T PRK02083 185 -----DLELTRAVSDAV-------NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEIT-IG----ELKAYLAEQ 247 (253)
T ss_pred -----CHHHHHHHHhhC-------CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCC-HH----HHHHHHHHC
Confidence 256677777765 799999999999999999997 599999999999875332 22 445566667
Q ss_pred CCC
Q 014581 362 NFS 364 (422)
Q Consensus 362 G~~ 364 (422)
|+.
T Consensus 248 ~~~ 250 (253)
T PRK02083 248 GIP 250 (253)
T ss_pred CCc
Confidence 764
No 101
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.07 E-value=1.5e-08 Score=97.55 Aligned_cols=170 Identities=12% Similarity=0.074 Sum_probs=113.3
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHh-hc
Q 014581 138 KEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWIN-AK 216 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr-~~ 216 (422)
+.++++++.. +.|+.+.=+ -.+.++.. .+..+|++.+.++.. ...+|+.+.++.+..- +.
T Consensus 64 ~~i~~i~~~~-~~pv~~~GG-i~s~~d~~----~~~~~Ga~~vivgt~-------------~~~~p~~~~~~~~~~~~~~ 124 (254)
T TIGR00735 64 DVVERTAETV-FIPLTVGGG-IKSIEDVD----KLLRAGADKVSINTA-------------AVKNPELIYELADRFGSQC 124 (254)
T ss_pred HHHHHHHHhc-CCCEEEECC-CCCHHHHH----HHHHcCCCEEEEChh-------------HhhChHHHHHHHHHcCCCC
Confidence 3455665544 678876543 23555533 333469999988732 2356778888776652 22
Q ss_pred c--Cc-----cE------EEEECCCC----CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 217 A--TV-----PV------WAKMTPNI----TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 217 ~--~i-----Pv------~vKl~~~~----~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
. .+ ++ -||++... .+..++++.+.+.|++.|.+++.... |..
T Consensus 125 iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~---------------------g~~ 183 (254)
T TIGR00735 125 IVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKD---------------------GTK 183 (254)
T ss_pred EEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcc---------------------cCC
Confidence 1 11 21 35554432 24678999999999999998763211 111
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHHHHHHH
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEELKDFM 358 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~l~~~m 358 (422)
.|+ .++.++++++.. ++|||++|||.+.+|+.+++..| |++|++|++++..... .+++.++|
T Consensus 184 ~g~-----~~~~~~~i~~~~-------~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~-----~~~~~~~~ 246 (254)
T TIGR00735 184 SGY-----DLELTKAVSEAV-------KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT-----IGEVKEYL 246 (254)
T ss_pred CCC-----CHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC-----HHHHHHHH
Confidence 221 246677777765 79999999999999999999988 9999999998865322 34667788
Q ss_pred HHcCCC
Q 014581 359 KMHNFS 364 (422)
Q Consensus 359 ~~~G~~ 364 (422)
+++||+
T Consensus 247 ~~~gi~ 252 (254)
T TIGR00735 247 AERGIP 252 (254)
T ss_pred HHCCCc
Confidence 888885
No 102
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.06 E-value=1e-08 Score=96.68 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEE
Q 014581 168 LIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGV 247 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi 247 (422)
.++.+.++|+|+|.+... .... .+.+.+.++++.+++..++|+++-.. + .+.++.+.+.|+|.+
T Consensus 80 ~v~~a~~aGad~I~~d~~--~~~~---------p~~~~~~~~i~~~~~~~~i~vi~~v~----t-~ee~~~a~~~G~d~i 143 (221)
T PRK01130 80 EVDALAAAGADIIALDAT--LRPR---------PDGETLAELVKRIKEYPGQLLMADCS----T-LEEGLAAQKLGFDFI 143 (221)
T ss_pred HHHHHHHcCCCEEEEeCC--CCCC---------CCCCCHHHHHHHHHhCCCCeEEEeCC----C-HHHHHHHHHcCCCEE
Confidence 456677889999988753 2100 00034667788777634778876432 2 345688999999998
Q ss_pred EEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH
Q 014581 248 SAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL 327 (422)
Q Consensus 248 ~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~ 327 (422)
.+.++... ... .... +..+..++++++.+ ++||++.|||.+++|+.+++.
T Consensus 144 ~~~~~g~t-------~~~-----------~~~~-----~~~~~~i~~i~~~~-------~iPvia~GGI~t~~~~~~~l~ 193 (221)
T PRK01130 144 GTTLSGYT-------EET-----------KKPE-----EPDFALLKELLKAV-------GCPVIAEGRINTPEQAKKALE 193 (221)
T ss_pred EcCCceee-------cCC-----------CCCC-----CcCHHHHHHHHHhC-------CCCEEEECCCCCHHHHHHHHH
Confidence 66443111 000 0000 12246677788765 799999999999999999999
Q ss_pred hCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 328 LGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 328 aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
+|||+|++||+++.. .+..+++.+.+
T Consensus 194 ~GadgV~iGsai~~~-~~~~~~~~~~~ 219 (221)
T PRK01130 194 LGAHAVVVGGAITRP-EEITKWFVDAL 219 (221)
T ss_pred CCCCEEEEchHhcCC-HHHHHHHHHHh
Confidence 999999999998753 45555554433
No 103
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.05 E-value=1.1e-08 Score=107.44 Aligned_cols=166 Identities=25% Similarity=0.303 Sum_probs=114.3
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCC
Q 014581 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGS 244 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGa 244 (422)
.+.++.+.++|+|.|-++.. |. ....+.+.++++++.. +.||+++- +. ..+-++.|.++|+
T Consensus 230 ~e~a~~L~~agvdvivvD~a--~g------------~~~~vl~~i~~i~~~~p~~~vi~g~---v~-t~e~a~~l~~aGa 291 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTA--HG------------HSEGVLDRVREIKAKYPDVQIIAGN---VA-TAEAARALIEAGA 291 (486)
T ss_pred HHHHHHHHHhCCCEEEEECC--CC------------cchhHHHHHHHHHhhCCCCCEEEec---cC-CHHHHHHHHHcCC
Confidence 56677777889999987642 32 1133566788888776 89999953 22 3567889999999
Q ss_pred CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHH
Q 014581 245 EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAE 324 (422)
Q Consensus 245 dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~ 324 (422)
|+|.+..+... + .+.+. ..+. |. | .+..+.++++.... .++|||+.|||.++.|+.+
T Consensus 292 d~i~vg~g~gs---~--~~~r~---------~~~~-g~---p-~~~~~~~~~~~~~~----~~~~viadGGi~~~~di~k 348 (486)
T PRK05567 292 DAVKVGIGPGS---I--CTTRI---------VAGV-GV---P-QITAIADAAEAAKK----YGIPVIADGGIRYSGDIAK 348 (486)
T ss_pred CEEEECCCCCc---c--cccee---------ecCC-Cc---C-HHHHHHHHHHHhcc----CCCeEEEcCCCCCHHHHHH
Confidence 99986432111 1 11111 0111 11 2 34567777776532 2799999999999999999
Q ss_pred HHHhCCCEEEEhhHHHhh---------------------------------------------------------hh--H
Q 014581 325 FILLGANTVQVCTGVMMH---------------------------------------------------------GY--G 345 (422)
Q Consensus 325 ~l~aGAd~V~vgtall~~---------------------------------------------------------Gp--~ 345 (422)
+|.+|||+||+|+++-.- |+ +
T Consensus 349 Ala~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~ 428 (486)
T PRK05567 349 ALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSE 428 (486)
T ss_pred HHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCceEEeCCCCCCHHH
Confidence 999999999999987320 11 2
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHhhcC
Q 014581 346 LVKRLCEELKDFMKMHNFSSIEDFRGA 372 (422)
Q Consensus 346 ~i~~i~~~l~~~m~~~G~~si~d~~G~ 372 (422)
++..+..+|+.-|...|..+|.||+-.
T Consensus 429 ~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 429 IIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred HHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 456677788888889999999998744
No 104
>PLN02591 tryptophan synthase
Probab=99.05 E-value=2.4e-08 Score=95.57 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=112.0
Q ss_pred EEEEeCCC-CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccc-------cccccc--cChhHHHHHHHHHhhccCccE
Q 014581 152 LIASIMEE-YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERK-------MGAAVG--QDCRLLEEVCGWINAKATVPV 221 (422)
Q Consensus 152 vi~si~~~-~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~-------~G~~l~--~~~~~v~~iv~~vr~~~~iPv 221 (422)
++.-++.| .+.+...++++.+.+.|+|.|||.+ |.+++..+ .-.++. .+.+.+-++++.+|+..++|+
T Consensus 4 li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ 81 (250)
T PLN02591 4 FIPYITAGDPDLDTTAEALRLLDACGADVIELGV--PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPI 81 (250)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 55555544 4788899999999999999999986 33332211 011122 245567778888887778897
Q ss_pred EEEECCC--CC-ChHHHHHHHHHcCCCEEEEecCCcc----------cccccc------cCCC----CCCC-CCCC---C
Q 014581 222 WAKMTPN--IT-DITEPARVALRSGSEGVSAINTIMS----------VMGIDL------KTLR----PEPC-VEGY---S 274 (422)
Q Consensus 222 ~vKl~~~--~~-~~~~~a~~l~~aGadgi~v~n~~~~----------~~~id~------e~~~----p~~~-~~~~---~ 274 (422)
++-.--| +. ...++.+.+.++|+||+.+-.-... ..+++. .+.. .... ..++ .
T Consensus 82 ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 82 VLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred EEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 6432211 11 3567888899999999876541100 001110 0000 0000 0011 1
Q ss_pred ccCCCCCCC--cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 275 TPGGYSCKA--VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 275 ~~gG~sG~~--i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
...|.+|.. +.+...+.++++++.. ++||+..-||++++|+.+++..|||+|-+||++++
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~-------~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVT-------DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcC-------CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 124444532 2233345577777753 89999999999999999999999999999999986
No 105
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.04 E-value=1.5e-08 Score=96.58 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=104.0
Q ss_pred HHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhh-c
Q 014581 139 EFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINA-K 216 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~-~ 216 (422)
.++++.+.+ +.|+++. ++. +.++. +.+.++|||.+.++- ....+++.+.++.+.+.. .
T Consensus 67 ~i~~i~~~~-~~~l~v~--GGi~~~~~~----~~~~~~Ga~~v~iGs-------------~~~~~~~~~~~i~~~~g~~~ 126 (241)
T PRK13585 67 AIEKIIEAV-GVPVQLG--GGIRSAEDA----ASLLDLGVDRVILGT-------------AAVENPEIVRELSEEFGSER 126 (241)
T ss_pred HHHHHHHHc-CCcEEEc--CCcCCHHHH----HHHHHcCCCEEEECh-------------HHhhChHHHHHHHHHhCCCc
Confidence 344555544 5677763 232 44443 334457999987753 223567777777776522 1
Q ss_pred c-------CccEEEEECCC--CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 217 A-------TVPVWAKMTPN--ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 217 ~-------~iPv~vKl~~~--~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
. +.++.+|-.-. -.+..++++.+.+.|++.|+++++... |...| .
T Consensus 127 i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~---------------------g~~~g-----~ 180 (241)
T PRK13585 127 VMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVE---------------------GLLEG-----V 180 (241)
T ss_pred EEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCC---------------------CCcCC-----C
Confidence 1 12233321111 115688999999999999998875321 11122 1
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHH
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~ 352 (422)
.++.++++++.+ ++||+++|||++.+|+.+++.+||++|+++|+++.+ +..+++++.
T Consensus 181 ~~~~i~~i~~~~-------~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~-~~~~~~~~~ 237 (241)
T PRK13585 181 NTEPVKELVDSV-------DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG-KFTLEEAIE 237 (241)
T ss_pred CHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC-CcCHHHHHH
Confidence 256677787765 799999999999999999999999999999999887 555555443
No 106
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.02 E-value=1.1e-09 Score=102.79 Aligned_cols=170 Identities=19% Similarity=0.180 Sum_probs=106.0
Q ss_pred CCeEEEEeCCCCCH--------HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCcc
Q 014581 149 DKILIASIMEEYNK--------AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220 (422)
Q Consensus 149 ~~pvi~si~~~~~~--------~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iP 220 (422)
+.+||+.+. ..+| .+|.++|+.++++||++|-++.- +. .+...++ .++.+++.+++|
T Consensus 10 ~~~vIae~k-~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~-~~---------~~~g~~~----~~~~i~~~v~iP 74 (217)
T cd00331 10 GLGVIAEVK-RASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTE-PK---------YFQGSLE----DLRAVREAVSLP 74 (217)
T ss_pred CceEEEEec-CCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeC-cc---------ccCCCHH----HHHHHHHhcCCC
Confidence 468999996 3333 45999999999999999977631 11 1122333 445555556899
Q ss_pred EEEEECCCCCChHHHHHHHHHcCCCEEEEecCCccc------------cccc----ccCCCCCCCC--CCCC--ccCCCC
Q 014581 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSV------------MGID----LKTLRPEPCV--EGYS--TPGGYS 280 (422)
Q Consensus 221 v~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~------------~~id----~e~~~p~~~~--~~~~--~~gG~s 280 (422)
|.+|- .+.+ ...++.+.++|+|+|++..+.... .+++ +.+.+..... .+.. ..++..
T Consensus 75 i~~~~--~i~~-~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~ 151 (217)
T cd00331 75 VLRKD--FIID-PYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRD 151 (217)
T ss_pred EEECC--eecC-HHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCC
Confidence 99873 2333 357889999999999876643220 1111 0110000000 0000 011111
Q ss_pred CCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 281 G~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+.. .+..++.+.++++.++. ++||++.|||.+++|+.+++.+||++|.+||+++..
T Consensus 152 ~~~-~~~~~~~~~~l~~~~~~-----~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 152 LKT-FEVDLNTTERLAPLIPK-----DVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred ccc-cCcCHHHHHHHHHhCCC-----CCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 111 12334566677665421 689999999999999999999999999999999975
No 107
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.02 E-value=2.6e-08 Score=94.39 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=100.1
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCc
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~i 219 (422)
++++.+.. +.|+.+.-+ -.+.++ ++.+.++|+|.+-++.. +..+++.+.++.+.+... .+
T Consensus 64 i~~i~~~~-~~pi~~ggG-I~~~ed----~~~~~~~Ga~~vvlgs~-------------~l~d~~~~~~~~~~~g~~-~i 123 (230)
T TIGR00007 64 IKKIVRET-GVPVQVGGG-IRSLED----VEKLLDLGVDRVIIGTA-------------AVENPDLVKELLKEYGPE-RI 123 (230)
T ss_pred HHHHHHhc-CCCEEEeCC-cCCHHH----HHHHHHcCCCEEEEChH-------------HhhCHHHHHHHHHHhCCC-cE
Confidence 44454443 567776442 134444 34455579999876632 235667788888776421 23
Q ss_pred cEEEEECC------C-----CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 220 PVWAKMTP------N-----ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 220 Pv~vKl~~------~-----~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
.+.+++.. + ..+..++++.+.+.|++.+++++.... |..+|+ .
T Consensus 124 ~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~---------------------g~~~g~-----~ 177 (230)
T TIGR00007 124 VVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRD---------------------GTLSGP-----N 177 (230)
T ss_pred EEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCC---------------------CCcCCC-----C
Confidence 33333221 0 124578999999999999998865321 111221 2
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++.++++++.+ ++||+++|||.+.+|+.+++.+||++|++||+++.+
T Consensus 178 ~~~i~~i~~~~-------~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 178 FELTKELVKAV-------NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 56777777764 799999999999999999999999999999999876
No 108
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.02 E-value=2.6e-08 Score=94.60 Aligned_cols=148 Identities=18% Similarity=0.120 Sum_probs=99.6
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCc
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~i 219 (422)
++++.+.. +.|+++.=+ -.+.++..+ +.+.|++.+.++. .+..+++.++++.+...+. .+
T Consensus 66 ~~~i~~~~-~~pv~~~gg-i~~~~d~~~----~~~~G~~~vilg~-------------~~l~~~~~~~~~~~~~~~~-~i 125 (232)
T TIGR03572 66 ISNLAEEC-FMPLTVGGG-IRSLEDAKK----LLSLGADKVSINT-------------AALENPDLIEEAARRFGSQ-CV 125 (232)
T ss_pred HHHHHHhC-CCCEEEECC-CCCHHHHHH----HHHcCCCEEEECh-------------hHhcCHHHHHHHHHHcCCc-eE
Confidence 44444443 678766432 234444332 3456999998873 2335678888887765332 25
Q ss_pred cEEEEECCC-----------------CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 220 PVWAKMTPN-----------------ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 220 Pv~vKl~~~-----------------~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
++.+++..+ ..+..++++.+.++|++.|++++.... +...|+
T Consensus 126 ~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~---------------------g~~~g~ 184 (232)
T TIGR03572 126 VVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRD---------------------GTMKGY 184 (232)
T ss_pred EEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCcc---------------------CCcCCC
Confidence 566554332 124678999999999999999874321 112222
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHH-HHHhCCCEEEEhhHHH
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAE-FILLGANTVQVCTGVM 340 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~-~l~aGAd~V~vgtall 340 (422)
.++.++++++.+ ++||+++|||.+.+|+.+ +...||++|++||+|-
T Consensus 185 -----~~~~~~~i~~~~-------~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 185 -----DLELIKTVSDAV-------SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred -----CHHHHHHHHhhC-------CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 256777787765 799999999999999999 5569999999999974
No 109
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.02 E-value=1.8e-08 Score=95.57 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=102.3
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.++++.+.. +.|+++.=+ -.+.++. +++.+.|+|.+-++. ++..+++.+.++++...+...
T Consensus 65 ~i~~i~~~~-~~pv~~~GG-I~~~ed~----~~~~~~Ga~~vilg~-------------~~l~~~~~l~ei~~~~~~~i~ 125 (233)
T PRK00748 65 LIEAIVKAV-DIPVQVGGG-IRSLETV----EALLDAGVSRVIIGT-------------AAVKNPELVKEACKKFPGKIV 125 (233)
T ss_pred HHHHHHHHC-CCCEEEcCC-cCCHHHH----HHHHHcCCCEEEECc-------------hHHhCHHHHHHHHHHhCCCce
Confidence 355555543 678877432 1345553 344456999987663 233566778888887755433
Q ss_pred ccEEEE-----ECCC----CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 219 VPVWAK-----MTPN----ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 219 iPv~vK-----l~~~----~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
+++-+| +... ..+..++++.+.+.|++.|.+++.... |.++|+ .+
T Consensus 126 vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~---------------------g~~~G~-----d~ 179 (233)
T PRK00748 126 VGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRD---------------------GTLSGP-----NV 179 (233)
T ss_pred eeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCc---------------------CCcCCC-----CH
Confidence 343333 1111 124678999999999999988864321 122231 25
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhh
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMH 342 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~ 342 (422)
+.++++++.. ++|||++|||.+.+|+.+++..| |++|++||+++..
T Consensus 180 ~~i~~l~~~~-------~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 180 EATRELAAAV-------PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 6777787765 79999999999999999999988 9999999999875
No 110
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.01 E-value=1.6e-08 Score=95.18 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=89.6
Q ss_pred HHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEE
Q 014581 168 LIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGV 247 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi 247 (422)
.++.+.++|+|+|.++.+.-.. .+.+.+.++++++++..++|+++... + .+.+..+.++|+|.+
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~-----------p~~~~~~~~i~~~~~~g~~~iiv~v~----t-~~ea~~a~~~G~d~i 147 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPR-----------PDGETLAELIKRIHEEYNCLLMADIS----T-LEEALNAAKLGFDII 147 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCC-----------CCCcCHHHHHHHHHHHhCCeEEEECC----C-HHHHHHHHHcCCCEE
Confidence 4577778899999998643211 01124667887777765688888642 2 345688899999998
Q ss_pred EEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH
Q 014581 248 SAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL 327 (422)
Q Consensus 248 ~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~ 327 (422)
.+.+.... . .. .... ...++.++++++.+ ++||++.|||.+++|+.+++.
T Consensus 148 ~~~~~g~t--~---~~-------------~~~~-----~~~~~~l~~i~~~~-------~ipvia~GGI~~~~~~~~~l~ 197 (219)
T cd04729 148 GTTLSGYT--E---ET-------------AKTE-----DPDFELLKELRKAL-------GIPVIAEGRINSPEQAAKALE 197 (219)
T ss_pred EccCcccc--c---cc-------------cCCC-----CCCHHHHHHHHHhc-------CCCEEEeCCCCCHHHHHHHHH
Confidence 65432110 0 00 0001 11246777787765 799999999999999999999
Q ss_pred hCCCEEEEhhHHHhh
Q 014581 328 LGANTVQVCTGVMMH 342 (422)
Q Consensus 328 aGAd~V~vgtall~~ 342 (422)
+|||+|++||+++..
T Consensus 198 ~GadgV~vGsal~~~ 212 (219)
T cd04729 198 LGADAVVVGSAITRP 212 (219)
T ss_pred CCCCEEEEchHHhCh
Confidence 999999999998865
No 111
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.00 E-value=1.2e-08 Score=114.04 Aligned_cols=285 Identities=17% Similarity=0.205 Sum_probs=178.0
Q ss_pred CCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccc
Q 014581 43 AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGW 122 (422)
Q Consensus 43 ~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl 122 (422)
.+..-..+++|-++++||+.||||.|+-+.++...+-+|.-|+++|||..-. ...-++|.+..-++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~gpaagp~~ql~qn~~~~~~~g~r~~elktvq~~~-~~~~~~pci~~~~~~------------ 103 (1012)
T TIGR03315 37 ADPGKYISLFGEKLETPVGPAAGPHTQLAQNIVASYLTGGRFFELKTVQVLD-GLDLPKPCIDAADEC------------ 103 (1012)
T ss_pred CCCCCeeehhcccCCCCCCCCCCchHHHHHHHHHHHHcccceEEeeeEEeec-ccccCCCccCcccce------------
Confidence 3445666789999999999999999988888988889999999999998732 122346766322221
Q ss_pred cccc----ccCCChHHHHHH-H--HHHHHhhC----C-CCeEEEEeCCCCC---------------------HHHHHHHH
Q 014581 123 ENIE----LISDRPLETMLK-E--FKQLKALY----P-DKILIASIMEEYN---------------------KAAWEELI 169 (422)
Q Consensus 123 ~n~~----~~s~~~~e~~l~-~--i~~~k~~~----~-~~pvi~si~~~~~---------------------~~~~~~~a 169 (422)
.|.| +.-+...++|++ + ++-+.+++ + +-.+-.|++ |+ .+.|.++-
T Consensus 104 ~n~ews~e~~~~~a~~ey~k~~~~~~~~~~~~~~~~~~~~~~n~svg--y~l~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1012)
T TIGR03315 104 YNVEWSTELTVPEAYDEYVKAWFLLHLLEKEFELGDPRGFMFNMSVG--YDLAGIKSPKVDRYIEEMQDASGTPIFAECR 181 (1012)
T ss_pred eeeecccccchHHHHHHHHHHHHHHHHHHHHhCCCCccceEEEeecc--cCccccCcccHHHHHHHhhhcccChHHHHHH
Confidence 2333 222334555544 3 23333333 1 224455663 32 12455665
Q ss_pred HHHHHh-----CCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC--------------
Q 014581 170 DRVEET-----GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT-------------- 230 (422)
Q Consensus 170 ~~~~~a-----GaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~-------------- 230 (422)
+.+.+. .+|.-.|+--.|+.-+.-....-.+.-|+.++.|.+.+-+..++-.+||++|++-
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~st~hgcp~~eie~i~~~~~~~k~~~~~~k~nptllg~~~~r~~~~~~g~ 261 (1012)
T TIGR03315 182 ATLKKYIDYFKKVDDEFIDAISPKVCHSVTLSTMHGCPPDEIEAICRYLLEEKGLHTFVKLNPTLLGYKFVRDTMDEMGF 261 (1012)
T ss_pred HHHHHHHHHhhhcCHhhhhcCChhhcCceeehhccCCCHHHHHHHHHHHHhccCCceEEeeCcccccHHHHHHHHHhcCC
Confidence 544331 1221112211122100000001123678899999999988888999999998531
Q ss_pred -----------------ChHHHHHH----HHHcCC-CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 231 -----------------DITEPARV----ALRSGS-EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 231 -----------------~~~~~a~~----l~~aGa-dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
+.+.+.++ +.+.|. -||.++||++- |+.+. .+| +....+||++++|++
T Consensus 262 ~~~~~~~~~f~~dl~~~~~~~~~~~l~~~~~~~~~~fgvk~~nt~~~----~~~~~-~~p-----~~~my~sg~~l~~~~ 331 (1012)
T TIGR03315 262 DYIVLKEESFSHDLQYEDAVAMLQRLQLLAKEKGLGFGVKLTNTLPV----TIAKG-ELP-----GEEMYMSGRALFPLS 331 (1012)
T ss_pred ceEecchhhcccccchhHHHHHHHHHHHHHHHcCCeeeEEEecccce----eecCC-CCC-----cccccccCCccccch
Confidence 22333333 334554 46889999853 44432 233 245778999999999
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhH-HHHHHHHHHHHHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG-LVKRLCEELKDFM 358 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~-~i~~i~~~l~~~m 358 (422)
.....++.+.+.+ +.||.++||-. .-.+.+.+..|.+.|-+++.+++-|-. -+..+.+.|+..+
T Consensus 332 ~~~~~~l~~~f~g-----~~~i~~~~g~~-~~n~~~~~~~gi~pv~~a~~~lk~~~~~~~~~l~~~l~~~~ 396 (1012)
T TIGR03315 332 INLAAKLSREFDG-----KLQISYSGGAD-IFNIKEIFDTGIWPITMATTLLKPGGYLRLNQCANELETSE 396 (1012)
T ss_pred HHHHHhhHHhhCC-----CCceEEEeccc-cccHHhhcCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 9877777777754 79999999975 555668888999999999999986432 3556666666544
No 112
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.00 E-value=2.3e-08 Score=94.79 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=101.1
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhh-ccC
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINA-KAT 218 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~-~~~ 218 (422)
++++++.. +.|+.+.=+ -.+.++ ++.+.++|||.+-++.. ...+++.+.++.+.+.+ ..-
T Consensus 65 i~~i~~~~-~~pv~~~Gg-I~~~e~----~~~~~~~Gad~vvigs~-------------~l~dp~~~~~i~~~~g~~~i~ 125 (234)
T cd04732 65 IEEIVKAV-GIPVQVGGG-IRSLED----IERLLDLGVSRVIIGTA-------------AVKNPELVKELLKEYGGERIV 125 (234)
T ss_pred HHHHHHhc-CCCEEEeCC-cCCHHH----HHHHHHcCCCEEEECch-------------HHhChHHHHHHHHHcCCceEE
Confidence 44555544 567776432 134444 34444579999987632 23567778888777643 111
Q ss_pred ccEEEEE-----CC----CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 219 VPVWAKM-----TP----NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 219 iPv~vKl-----~~----~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
+++-+|. .. ...+..++++.+.+.|++.+++++.... |...|+ .+
T Consensus 126 ~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~---------------------g~~~g~-----~~ 179 (234)
T cd04732 126 VGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRD---------------------GTLSGP-----NF 179 (234)
T ss_pred EEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCC---------------------CccCCC-----CH
Confidence 2222221 11 1225678999999999999998865321 112221 25
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhh
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~G 343 (422)
+.++++++.. ++||+++|||.+.+|+.+++..||++|++||+++.+.
T Consensus 180 ~~i~~i~~~~-------~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 180 ELYKELAAAT-------GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred HHHHHHHHhc-------CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 6777787765 7999999999999999999999999999999998773
No 113
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.99 E-value=7.1e-08 Score=92.12 Aligned_cols=192 Identities=23% Similarity=0.189 Sum_probs=120.5
Q ss_pred HHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccc-------cccc--ccChhHHHH
Q 014581 139 EFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKM-------GAAV--GQDCRLLEE 208 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~-------G~~l--~~~~~~v~~ 208 (422)
.+.+++.+. +.-++.-++.|+ +.+...++++.+.++|+|+|||.+ |.+++..+. =.++ +...+.+-+
T Consensus 7 ~F~~l~~~~-~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGv--PfSDPvADGP~Iq~A~~rAL~~g~t~~~~le 83 (265)
T COG0159 7 KFAQLKAEN-RGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGV--PFSDPVADGPTIQAAHLRALAAGVTLEDTLE 83 (265)
T ss_pred HHHHHHHhC-CCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecC--CCCCcCccCHHHHHHHHHHHHCCCCHHHHHH
Confidence 455555432 345677776554 788999999999999999999986 333322110 0011 246677788
Q ss_pred HHHHHhhc-cCccEEEEECCCC---CChHHHHHHHHHcCCCEEEEecCCccc----------ccccc----------cCC
Q 014581 209 VCGWINAK-ATVPVWAKMTPNI---TDITEPARVALRSGSEGVSAINTIMSV----------MGIDL----------KTL 264 (422)
Q Consensus 209 iv~~vr~~-~~iPv~vKl~~~~---~~~~~~a~~l~~aGadgi~v~n~~~~~----------~~id~----------e~~ 264 (422)
+++.+|+. .++|+++=.--|. ..+.++.+.+.++|+||+.+..-.... .++|. ++.
T Consensus 84 l~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl 163 (265)
T COG0159 84 LVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERL 163 (265)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Confidence 88888854 6889887543221 135778889999999999766421110 11110 000
Q ss_pred CCCCC-CCCC---CccCCCCCCCcc--hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhH
Q 014581 265 RPEPC-VEGY---STPGGYSCKAVH--PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 265 ~p~~~-~~~~---~~~gG~sG~~i~--p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgta 338 (422)
+-... ..|| ....|..|.... ...-+.|+++++.. ++||...-||++++++.++..+ ||+|.+||+
T Consensus 164 ~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-------~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 164 KKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-------DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSA 235 (265)
T ss_pred HHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc-------CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHH
Confidence 00000 0111 122344453322 12345667777654 8999999999999999999999 999999999
Q ss_pred HHh
Q 014581 339 VMM 341 (422)
Q Consensus 339 ll~ 341 (422)
++.
T Consensus 236 iV~ 238 (265)
T COG0159 236 IVK 238 (265)
T ss_pred HHH
Confidence 975
No 114
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.98 E-value=1.4e-08 Score=113.29 Aligned_cols=284 Identities=17% Similarity=0.197 Sum_probs=176.2
Q ss_pred CCCCcceEeCCeecCCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccc
Q 014581 43 AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGW 122 (422)
Q Consensus 43 ~~~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl 122 (422)
.+..-..+++|-++++|++.||||.|+-+.++...+-+|.-++++|||..-. ...-++|.+..-++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~gpaagp~tql~qn~~~~~~~g~r~~elktvq~~d-~~~~~~pci~~~de~------------ 104 (1019)
T PRK09853 38 PDKGKTISVFGETLATPIGPAAGPHTQLAQNIVASYLTGGRFIELKTVQILD-GLELEKPCIDAEDEC------------ 104 (1019)
T ss_pred CCCCCeeehhcccCCCCCCCCCCchHHHHHHHHHHHHccCceEEEEEEEeec-ccccCCCccCcccce------------
Confidence 3445566789999999999999999988888998889999999999998622 122236666322221
Q ss_pred cccc----ccCCChHHHHHH-H--HHHHHhhC----C--CCeEEEEeCCCCC---------------------HHHHHHH
Q 014581 123 ENIE----LISDRPLETMLK-E--FKQLKALY----P--DKILIASIMEEYN---------------------KAAWEEL 168 (422)
Q Consensus 123 ~n~~----~~s~~~~e~~l~-~--i~~~k~~~----~--~~pvi~si~~~~~---------------------~~~~~~~ 168 (422)
.|.| +.-+...++|++ + ++-+.+++ + +-.+-.|++ |+ .+.|.++
T Consensus 105 ~n~ews~e~~~~~a~~ey~ka~~~~~~~~~~~~~~~~~~~f~~n~svg--y~l~gi~~~~~~~~i~~~~~~~~~~~~~~~ 182 (1019)
T PRK09853 105 YNTEWSTELTLPKAYDEYLKAWFALHLLEKEFQLSDSGKSFIFNMSVG--YDLEGIKSPKMQQFIDGMMDASDTPIFAEC 182 (1019)
T ss_pred eeeecccccchHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEeecc--cCccccCchhHHHHHHHhhhcccChHHHHH
Confidence 2333 222334555554 3 23333333 1 123445553 32 2345665
Q ss_pred HHHHHHh-----CCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC-------------
Q 014581 169 IDRVEET-----GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT------------- 230 (422)
Q Consensus 169 a~~~~~a-----GaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~------------- 230 (422)
-+.+.+. .++.-.|+--.|+.-+.-....-.+.-|+.++.|.+.+-+..++..+||++|++-
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~st~hgcp~~eie~i~~~~~~~k~~~~~~k~nptllg~~~~r~~~d~~g 262 (1019)
T PRK09853 183 RETLNKLLDDFAFLAREGLERIPPSICPSVTLSTMHGCPPHEIEAIARYLLEEKGLNTFVKLNPTLLGYERVREILDKMG 262 (1019)
T ss_pred HHHHHHHHHHHhhcchhhhhcCChhhcCceeehhccCCCHHHHHHHHHHHHhccCCceEEeeCcccccHHHHHHHHHhcC
Confidence 5554331 1111111111121100000011124678899999999988889999999998531
Q ss_pred ------------------ChHHHHHH----HHHcCC-CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 231 ------------------DITEPARV----ALRSGS-EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 231 ------------------~~~~~a~~----l~~aGa-dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
+.+.+.++ +.+.|. -||.++||++- |+.+. .+| +....+||++++|+
T Consensus 263 ~~~~~~~~~~f~~dl~~~~a~~m~~~l~~~~~~~~~~fgvk~tnt~~~----~~~~~-~lp-----~~~mymsg~~l~pl 332 (1019)
T PRK09853 263 FDYIGLKEEHFDHDLQYTDAVEMLERLMALAKEKGLGFGVKLTNTLPV----INNKG-ELP-----GEEMYMSGRALFPL 332 (1019)
T ss_pred CceEecchhhcccccchhHHHHHHHHHHHHHHHcCceeeEEEecccce----eecCC-CCC-----cccccccCCcccce
Confidence 22333333 344554 46889999853 44432 233 24577899999999
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhh-hHHHHHHHHHHHHH
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG-YGLVKRLCEELKDF 357 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~G-p~~i~~i~~~l~~~ 357 (422)
+.....++.+.+.+ +.||.++||-. .-.+.+.+..|.+.|-++|.+++-| +.-+..+.+.|+..
T Consensus 333 ~i~~a~~l~~~f~g-----~l~is~~~g~~-~~~~~~~~~~gi~pv~~a~~~lk~~~~~~~~~l~~~l~~~ 397 (1019)
T PRK09853 333 SINLAAKLSREFDG-----KLPISYSGGAD-QFNIRDIFDTGIRPITMATTLLKPGGYLRLTQCARELEGS 397 (1019)
T ss_pred eHHHHHhhHHhhCC-----CCceeEEeccc-eeehhhccCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99877778777754 79999999975 5556778889999999999999853 23355555555553
No 115
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.97 E-value=4.3e-08 Score=92.27 Aligned_cols=124 Identities=23% Similarity=0.261 Sum_probs=88.5
Q ss_pred HHHHHHhCCCEEEE--ccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEE---CCCCCC--hHHHHHHHHH
Q 014581 169 IDRVEETGIDAIEV--NFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM---TPNITD--ITEPARVALR 241 (422)
Q Consensus 169 a~~~~~aGaD~iEl--N~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl---~~~~~~--~~~~a~~l~~ 241 (422)
++.+.+.|+|-|++ |+++++. .+.+.+.+-++.+++.. .|+.+|+ ++.+++ +...++.+.+
T Consensus 80 ~~~Ai~~GA~EiD~Vin~~~~~~-----------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~ 147 (221)
T PRK00507 80 AKDAIANGADEIDMVINIGALKS-----------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKE 147 (221)
T ss_pred HHHHHHcCCceEeeeccHHHhcC-----------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHH
Confidence 34444568888765 6666664 23455666666666654 5889999 887764 5677888999
Q ss_pred cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHH
Q 014581 242 SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGD 321 (422)
Q Consensus 242 aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~d 321 (422)
+|+|+|. ++|... .+| .+++.|+.+++..++ +++|.++|||+|++|
T Consensus 148 agadfIK-TsTG~~--------------------~~g--------at~~~v~~m~~~~~~-----~~~IKasGGIrt~~~ 193 (221)
T PRK00507 148 AGADFVK-TSTGFS--------------------TGG--------ATVEDVKLMRETVGP-----RVGVKASGGIRTLED 193 (221)
T ss_pred hCCCEEE-cCCCCC--------------------CCC--------CCHHHHHHHHHHhCC-----CceEEeeCCcCCHHH
Confidence 9999654 444321 122 235667777777753 799999999999999
Q ss_pred HHHHHHhCCCEEEEhhH
Q 014581 322 AAEFILLGANTVQVCTG 338 (422)
Q Consensus 322 a~~~l~aGAd~V~vgta 338 (422)
+.+++.+||+.+...++
T Consensus 194 a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 194 ALAMIEAGATRLGTSAG 210 (221)
T ss_pred HHHHHHcCcceEccCcH
Confidence 99999999998887654
No 116
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.96 E-value=4.8e-07 Score=84.30 Aligned_cols=208 Identities=19% Similarity=0.212 Sum_probs=119.0
Q ss_pred EeCCeecCCCceecCCCCCCCHHHHHHHHH-cCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccccccccc
Q 014581 50 TVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELI 128 (422)
Q Consensus 50 ~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~-~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~ 128 (422)
++.|.+|++.++++.|-. .+.+.+++..+ +|.-.|+ +..+...... .+ +. .+.
T Consensus 1 ki~g~~f~SRL~lGTgky-~s~~~m~~ai~aSg~evvT---valRR~~~~~-~~-------~~-----~~~--------- 54 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKY-PSPEVMREAIEASGAEVVT---VALRRVNLGS-KP-------GG-----DNI--------- 54 (247)
T ss_dssp -ETTEEES-SEEEE-STS-SSHHHHHHHHHHTT-SEEE---EECCGSTTTS--T-------TC-----HHC---------
T ss_pred CcCCEEeecceEEecCCC-CCHHHHHHHHHHhCCcEEE---EEEecccCCC-CC-------CC-----ccH---------
Confidence 478999999999999988 57777777665 6877554 3332100000 00 00 000
Q ss_pred CCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCCEEEEccCCCCCCCccccccccccChhHHH
Q 014581 129 SDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLE 207 (422)
Q Consensus 129 s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a-GaD~iElN~scP~~~~~~~~G~~l~~~~~~v~ 207 (422)
++.| + ..+..+..|-.++.+.++....|+...++ +-|.|-|.+--... .+..|+..+-
T Consensus 55 --------~~~i---~--~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~--------~L~PD~~etl 113 (247)
T PF05690_consen 55 --------LDYI---D--RSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDK--------TLLPDPIETL 113 (247)
T ss_dssp --------CCCT---T--CCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TT--------T--B-HHHHH
T ss_pred --------HHHh---c--ccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC--------CcCCChhHHH
Confidence 0001 1 11567889998788999999999999886 68898887632111 1234443333
Q ss_pred HHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 208 EVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 208 ~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
+-.+.+.+. ..-|+--++++ .-+|++|+++|+..|.-.+.-.+ +.-|+. .|
T Consensus 114 ~Aae~Lv~e-GF~VlPY~~~D----~v~akrL~d~GcaavMPlgsPIG-------------------Sg~Gi~----n~- 164 (247)
T PF05690_consen 114 KAAEILVKE-GFVVLPYCTDD----PVLAKRLEDAGCAAVMPLGSPIG-------------------SGRGIQ----NP- 164 (247)
T ss_dssp HHHHHHHHT-T-EEEEEE-S-----HHHHHHHHHTT-SEBEEBSSSTT-------------------T---SS----TH-
T ss_pred HHHHHHHHC-CCEEeecCCCC----HHHHHHHHHCCCCEEEecccccc-------------------cCcCCC----CH-
Confidence 333333322 45566555543 56899999999998865443211 112221 13
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
..++.+++.. ++|||..+||.++.|+.+++++|||+|.+-|++...
T Consensus 165 --~~l~~i~~~~-------~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 165 --YNLRIIIERA-------DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp --HHHHHHHHHG-------SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTS
T ss_pred --HHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhcc
Confidence 4455677765 899999999999999999999999999999999763
No 117
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.94 E-value=2.8e-08 Score=95.45 Aligned_cols=192 Identities=21% Similarity=0.160 Sum_probs=114.9
Q ss_pred HHHhhCCCCeEEEEeCCC-CCHHHHHHHHHHHHHhCCCEEEEcc--CCCCCCCc--cc-cccc--cccChhHHHHHHHHH
Q 014581 142 QLKALYPDKILIASIMEE-YNKAAWEELIDRVEETGIDAIEVNF--SCPHGMPE--RK-MGAA--VGQDCRLLEEVCGWI 213 (422)
Q Consensus 142 ~~k~~~~~~pvi~si~~~-~~~~~~~~~a~~~~~aGaD~iElN~--scP~~~~~--~~-~G~~--l~~~~~~v~~iv~~v 213 (422)
++|++- ...++.-+..| .+.+.+.++++.+.+.|+|.|||.+ |-|..+.. +. .-.+ -+-+.+.+-++++.+
T Consensus 3 ~lk~~~-~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~i 81 (259)
T PF00290_consen 3 ELKKEG-RKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEI 81 (259)
T ss_dssp HHHHTT-BTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred hHHhCC-CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 455542 45677777655 4788999999999999999999986 33433211 00 0011 123556677788888
Q ss_pred h-hccCccEEEEECCCC---CChHHHHHHHHHcCCCEEEEecCCcc----------cccccc------cCC----C----
Q 014581 214 N-AKATVPVWAKMTPNI---TDITEPARVALRSGSEGVSAINTIMS----------VMGIDL------KTL----R---- 265 (422)
Q Consensus 214 r-~~~~iPv~vKl~~~~---~~~~~~a~~l~~aGadgi~v~n~~~~----------~~~id~------e~~----~---- 265 (422)
| +..++|+++-.--|. ....++++.+.++|+||+++-+-... ..++++ .+. +
T Consensus 82 r~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~ 161 (259)
T PF00290_consen 82 RKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAK 161 (259)
T ss_dssp HHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHH
T ss_pred hccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH
Confidence 8 777999987532110 12567888899999999977652211 011110 000 0
Q ss_pred CCCCCCCCCccCCCCCCC--cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 266 PEPCVEGYSTPGGYSCKA--VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 266 p~~~~~~~~~~gG~sG~~--i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
-..++-.+...-|..|.. +.....+.++++++.. ++||...-||++++|+.++. .|||+|.|||+++..
T Consensus 162 ~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-------~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~ 232 (259)
T PF00290_consen 162 QASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-------DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKI 232 (259)
T ss_dssp H-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-------SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHH
T ss_pred hCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-------CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHH
Confidence 000000001223334432 2223346677777664 79999999999999999999 999999999999863
No 118
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.92 E-value=4.8e-08 Score=96.74 Aligned_cols=135 Identities=20% Similarity=0.231 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCC
Q 014581 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGS 244 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGa 244 (422)
.+....+.++|+|.|.|+.|--|+ ..--+.+++||+.. +..|+. .|+- ..+.++.|.++||
T Consensus 253 K~rl~ll~~aGvdvviLDSSqGnS--------------~~qiemik~iK~~yP~l~Via---GNVV-T~~qa~nLI~aGa 314 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQGNS--------------IYQLEMIKYIKETYPDLQIIA---GNVV-TKEQAANLIAAGA 314 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCCcc--------------hhHHHHHHHHHhhCCCceeec---ccee-eHHHHHHHHHccC
Confidence 445567778999999999653332 23446888998865 556653 4432 3567888999999
Q ss_pred CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHH
Q 014581 245 EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAE 324 (422)
Q Consensus 245 dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~ 324 (422)
|++-+.-..++ |=+ +.+.. . .|. |.+ ..|+++++...+ .++|||+.|||.+..++.+
T Consensus 315 DgLrVGMGsGS---iCi-Tqevm--------a---~Gr---pQ~-TAVy~va~~A~q----~gvpviADGGiq~~Ghi~K 371 (503)
T KOG2550|consen 315 DGLRVGMGSGS---ICI-TQKVM--------A---CGR---PQG-TAVYKVAEFANQ----FGVPCIADGGIQNVGHVVK 371 (503)
T ss_pred ceeEeccccCc---eee-eceee--------e---ccC---Ccc-cchhhHHHHHHh----cCCceeecCCcCccchhHh
Confidence 99977543322 110 10100 0 111 222 234444443322 1899999999999999999
Q ss_pred HHHhCCCEEEEhhHHHh
Q 014581 325 FILLGANTVQVCTGVMM 341 (422)
Q Consensus 325 ~l~aGAd~V~vgtall~ 341 (422)
+|.+||++||+|+.+-.
T Consensus 372 Al~lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 372 ALGLGASTVMMGGLLAG 388 (503)
T ss_pred hhhcCchhheecceeee
Confidence 99999999999987643
No 119
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.92 E-value=8.6e-08 Score=91.86 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=109.2
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.|+.+++.. +.||++-+..++ ..-++.++++|+|+|. -+ . + .+| ..+++..+|+..+
T Consensus 58 ~I~~I~~~V-~iPVig~~kigh-----~~Ea~~L~~~GvDiID--eT--e----~-------lrP--ade~~~~~K~~f~ 114 (287)
T TIGR00343 58 MIKEIMDAV-SIPVMAKVRIGH-----FVEAQILEALGVDYID--ES--E----V-------LTP--ADWTFHIDKKKFK 114 (287)
T ss_pred HHHHHHHhC-CCCEEEEeeccH-----HHHHHHHHHcCCCEEE--cc--C----C-------CCc--HHHHHHHHHHHcC
Confidence 466666665 899999886443 3345778889999995 11 1 1 122 4667777777778
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccc---------cccccC--CCCCCCC-CCCCccCCCCCCCcch
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVM---------GIDLKT--LRPEPCV-EGYSTPGGYSCKAVHP 286 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~---------~id~e~--~~p~~~~-~~~~~~gG~sG~~i~p 286 (422)
.|++.-+ .++ +-+....+.|+|.|--..-.+... .+.-+. ......- +-+...-.+ .
T Consensus 115 vpfmad~----~~l-~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~------~ 183 (287)
T TIGR00343 115 VPFVCGA----RDL-GEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKEL------R 183 (287)
T ss_pred CCEEccC----CCH-HHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhccc------C
Confidence 9998643 333 346677899999885442111100 000000 0000000 000000001 1
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEE--EecCCCCHHHHHHHHHhCCCEEEEhhHHHh--hhhHHHHHHHHHHHHH
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLS--GIGGVETGGDAAEFILLGANTVQVCTGVMM--HGYGLVKRLCEELKDF 357 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipII--a~GGI~s~~da~~~l~aGAd~V~vgtall~--~Gp~~i~~i~~~l~~~ 357 (422)
..++.++++++.. ++||+ +.|||.|++|+.+++.+||++|.+||+++. +.....+++.+.+.+|
T Consensus 184 ~~~elLkei~~~~-------~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLG-------KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhC-------CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 2356777887754 79998 999999999999999999999999999996 3223466666666554
No 120
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.90 E-value=3.4e-08 Score=99.11 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=77.3
Q ss_pred cChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 201 QDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 201 ~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
.+++.+.+.++.+|+.. .+||.||+... .....++..+.++|+|.|++-+.-++. +- .|.. +....|+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~-~~~~~~~~~~~~ag~D~ItIDG~~GGT-GA-----ap~~----~~d~~Gl 253 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAG-RGVEDIAAGAAKAGADFITIDGAEGGT-GA-----APLT----SMDHVGL 253 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-S-TTHHHHHHHHHHTT-SEEEEE-TT----SS-----EECC----HHHHC--
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCC-CcHHHHHHhhhhccCCEEEEeCCCCCC-CC-----Cchh----HHhhCCC
Confidence 57788999999999998 89999999874 334445555899999999998765441 11 1110 0112233
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
|. ...+.++.+.+.+.--+.++.||++||+.++.|+.+++++|||+|.++|++|.
T Consensus 254 ------P~-~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~li 308 (368)
T PF01645_consen 254 ------PT-EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALI 308 (368)
T ss_dssp -------H-HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHH
T ss_pred ------cH-HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhh
Confidence 32 22344555554322112369999999999999999999999999999999886
No 121
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.88 E-value=7.3e-07 Score=83.96 Aligned_cols=209 Identities=13% Similarity=0.110 Sum_probs=131.8
Q ss_pred ceEeCCeecCCCceecCCCCCCCHHHHHHHHH-cCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccccccc
Q 014581 48 SITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIE 126 (422)
Q Consensus 48 ~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~-~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~ 126 (422)
..++.|.+|.+.+++++|-. .+.+.+++..+ +|.-.|++ ..+ |+. + ... + +
T Consensus 7 ~l~i~g~~f~SRL~lGTgky-~s~~~~~~ai~aSg~evvTv---alR---------R~~-~-~~~------------~-~ 58 (267)
T CHL00162 7 KLKIGNKSFNSRLMLGTGKY-KSLKDAIQSIEASGCEIVTV---AIR---------RLN-N-NLL------------N-D 58 (267)
T ss_pred ceEECCEEeecceEEecCCC-CCHHHHHHHHHHhCCcEEEE---EEE---------Eec-c-CcC------------C-C
Confidence 58899999999999999988 57777776665 68876643 221 111 0 000 0 0
Q ss_pred ccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhC-------CCEEEEccC-CCCCCCccccccc
Q 014581 127 LISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETG-------IDAIEVNFS-CPHGMPERKMGAA 198 (422)
Q Consensus 127 ~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aG-------aD~iElN~s-cP~~~~~~~~G~~ 198 (422)
-+.+++.|+.. +..+..|..++++.++.+..|+...+++ -+.|-|.+- .|.+
T Consensus 59 ------~~~~l~~i~~~-----~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~--------- 118 (267)
T CHL00162 59 ------NSNLLNGLDWN-----KLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKY--------- 118 (267)
T ss_pred ------cchHHHhhchh-----ccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcc---------
Confidence 12222223211 3456777877788999998888887754 678777753 2222
Q ss_pred cccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCC
Q 014581 199 VGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGG 278 (422)
Q Consensus 199 l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG 278 (422)
+..|+..+-+-.+.+.+. ..-|+. +..+-.-+|++|+++|+..|.--+...+ +.-|
T Consensus 119 LlPD~~etl~Aae~Lv~e-GF~VlP----Y~~~D~v~a~rLed~Gc~aVMPlgsPIG-------------------Sg~G 174 (267)
T CHL00162 119 LLPDPIGTLKAAEFLVKK-GFTVLP----YINADPMLAKHLEDIGCATVMPLGSPIG-------------------SGQG 174 (267)
T ss_pred cCCChHHHHHHHHHHHHC-CCEEee----cCCCCHHHHHHHHHcCCeEEeeccCccc-------------------CCCC
Confidence 233443333333333222 444553 3333356899999999998854432111 1122
Q ss_pred CCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 279 ~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+. .|. .++.+++.. ++||+..+||.+++|+.+++++|||+|.+.|++.+.
T Consensus 175 l~----n~~---~l~~i~e~~-------~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 175 LQ----NLL---NLQIIIENA-------KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred CC----CHH---HHHHHHHcC-------CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 21 233 344555543 799999999999999999999999999999999874
No 122
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=98.87 E-value=4.1e-08 Score=100.67 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=106.3
Q ss_pred cChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 201 QDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 201 ~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
..++.+.+.+..+|+.. ..+|.||+.... .+..++--..++++|.|++.+.-++ ++- .|... ....|+
T Consensus 285 ysieDLaqlI~dLk~~~~~~~I~VKlva~~-~v~~iaagvakA~AD~I~IdG~~GG-TGA-----sP~~~----~~~~Gi 353 (485)
T COG0069 285 YSIEDLAQLIKDLKEANPWAKISVKLVAEH-GVGTIAAGVAKAGADVITIDGADGG-TGA-----SPLTS----IDHAGI 353 (485)
T ss_pred cCHHHHHHHHHHHHhcCCCCeEEEEEeccc-chHHHHhhhhhccCCEEEEcCCCCc-CCC-----CcHhH----hhcCCc
Confidence 45688999999999986 567999998752 2233333388999999999876544 121 22211 112333
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh------------------
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM------------------ 341 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~------------------ 341 (422)
|.-+ .+.+..+.+...--+.++.|+++||+.|+.|+.+++++|||.|.++|+.|.
T Consensus 354 ------P~e~-glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~G 426 (485)
T COG0069 354 ------PWEL-GLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVG 426 (485)
T ss_pred ------hHHH-HHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCce
Confidence 2221 223333333211112378999999999999999999999999999998774
Q ss_pred ---hhhH----------------HHHHHHHHHHHHHHHcCCCCHHHhhcCC
Q 014581 342 ---HGYG----------------LVKRLCEELKDFMKMHNFSSIEDFRGAS 373 (422)
Q Consensus 342 ---~Gp~----------------~i~~i~~~l~~~m~~~G~~si~d~~G~~ 373 (422)
+-|. ++.-+.++++++|...|+.+++|++|..
T Consensus 427 IaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~el~g~~ 477 (485)
T COG0069 427 IATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIGRT 477 (485)
T ss_pred eeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcch
Confidence 1122 3555789999999999999999999863
No 123
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.84 E-value=3.3e-07 Score=85.30 Aligned_cols=151 Identities=15% Similarity=0.240 Sum_probs=101.8
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc
Q 014581 138 KEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
+.|+.+++.+++..+++-+. -.+++.+ .++.+.++|+|+|-++..+|. ..+.++++.+++.
T Consensus 41 ~~i~~l~~~~~~~~i~~d~k-~~d~~~~--~~~~~~~~Gad~i~vh~~~~~---------------~~~~~~i~~~~~~- 101 (206)
T TIGR03128 41 EAVKEMKEAFPDRKVLADLK-TMDAGEY--EAEQAFAAGADIVTVLGVADD---------------ATIKGAVKAAKKH- 101 (206)
T ss_pred HHHHHHHHHCCCCEEEEEEe-eccchHH--HHHHHHHcCCCEEEEeccCCH---------------HHHHHHHHHHHHc-
Confidence 34666666666777877663 2245443 356677889999998864432 2355677777664
Q ss_pred CccEEEEE-CCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHH
Q 014581 218 TVPVWAKM-TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIA 296 (422)
Q Consensus 218 ~iPv~vKl-~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~ 296 (422)
++++++-+ ++. +..+.++.+.+.|+|.+.+...+.+ +. .+ +..++.+++++
T Consensus 102 g~~~~~~~~~~~--t~~~~~~~~~~~g~d~v~~~pg~~~------~~------------~~--------~~~~~~i~~l~ 153 (206)
T TIGR03128 102 GKEVQVDLINVK--DKVKRAKELKELGADYIGVHTGLDE------QA------------KG--------QNPFEDLQTIL 153 (206)
T ss_pred CCEEEEEecCCC--ChHHHHHHHHHcCCCEEEEcCCcCc------cc------------CC--------CCCHHHHHHHH
Confidence 88998875 442 3456677778889998866432211 00 01 12245566777
Q ss_pred HHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 297 KMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 297 ~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+.++ .++|...||| +.+++.+++.+||+.|.+||+++..
T Consensus 154 ~~~~------~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 154 KLVK------EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred HhcC------CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCC
Confidence 7653 4667779999 7999999999999999999999864
No 124
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.84 E-value=9.9e-07 Score=85.03 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=129.5
Q ss_pred CCCCC--CCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHHH
Q 014581 64 SGPPG--TNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFK 141 (422)
Q Consensus 64 Ag~~~--~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i~ 141 (422)
+|.++ .+.+.++.+.+.|+-+++++-=+.+|-- .-|.+.+. +.-.|.| | ...+..++.++
T Consensus 20 aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~a---DGpvIq~a----------~~~AL~~-G----~~~~~~~~~~~ 81 (258)
T PRK13111 20 AGDPDLETSLEIIKALVEAGADIIELGIPFSDPVA---DGPVIQAA----------SLRALAA-G----VTLADVFELVR 81 (258)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcc---cCHHHHHH----------HHHHHHc-C----CCHHHHHHHHH
Confidence 44443 2456677788899999999987776521 12333210 1111221 1 12678888899
Q ss_pred HHHhhCCCCeEEEEeCCCCCH---HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 142 QLKALYPDKILIASIMEEYNK---AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 142 ~~k~~~~~~pvi~si~~~~~~---~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
++++..++.|++ ++.-+++ -...++.+.+.++|+|++-++ -. .++..+++++..++. +
T Consensus 82 ~~r~~~~~~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviip----DL------------p~ee~~~~~~~~~~~-g 142 (258)
T PRK13111 82 EIREKDPTIPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIP----DL------------PPEEAEELRAAAKKH-G 142 (258)
T ss_pred HHHhcCCCCCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEEC----CC------------CHHHHHHHHHHHHHc-C
Confidence 988555678876 4421222 123356777888999999884 11 124566677666664 6
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
+..+.=++|+.+ .+-++.+.+..-++|-+..+.+. .+. ..+. .+...+.++++++.
T Consensus 143 l~~I~lvap~t~--~eri~~i~~~s~gfIY~vs~~Gv-TG~----------------~~~~-----~~~~~~~i~~vk~~ 198 (258)
T PRK13111 143 LDLIFLVAPTTT--DERLKKIASHASGFVYYVSRAGV-TGA----------------RSAD-----AADLAELVARLKAH 198 (258)
T ss_pred CcEEEEeCCCCC--HHHHHHHHHhCCCcEEEEeCCCC-CCc----------------ccCC-----CccHHHHHHHHHhc
Confidence 666666777643 34445555555555655433211 010 0011 12234577888876
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
. ++||+..+||.+++|+.+++.. ||+|.+||+++..
T Consensus 199 ~-------~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~ 234 (258)
T PRK13111 199 T-------DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKI 234 (258)
T ss_pred C-------CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence 4 7999999999999999999975 9999999999853
No 125
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.83 E-value=8.6e-08 Score=100.01 Aligned_cols=136 Identities=20% Similarity=0.173 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHc
Q 014581 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRS 242 (422)
Q Consensus 164 ~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~a 242 (422)
+..+.++.+.++|+|.|.++.+.-| ...+.+.+++||+.. +.+|++ .|+. ..+-++.|.++
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~--------------~~~~~~~i~~ik~~~p~~~v~a---gnv~-t~~~a~~l~~a 288 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH--------------QEKMLEALRAVRALDPGVPIVA---GNVV-TAEGTRDLVEA 288 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc--------------cHHHHHHHHHHHHHCCCCeEEe---eccC-CHHHHHHHHHc
Confidence 3456677777889999998864322 245778889998875 788886 4443 35678899999
Q ss_pred CCCEEEEe-cCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHH
Q 014581 243 GSEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGD 321 (422)
Q Consensus 243 Gadgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~d 321 (422)
|+|+|.+. ++.. +-+. .++.|-. .| -+..|+++++...+ .++|||+.|||.++.|
T Consensus 289 Gad~v~vgig~gs------ictt------------~~~~~~~-~p-~~~av~~~~~~~~~----~~~~via~ggi~~~~~ 344 (479)
T PRK07807 289 GADIVKVGVGPGA------MCTT------------RMMTGVG-RP-QFSAVLECAAAARE----LGAHVWADGGVRHPRD 344 (479)
T ss_pred CCCEEEECccCCc------cccc------------ccccCCc-hh-HHHHHHHHHHHHHh----cCCcEEecCCCCCHHH
Confidence 99999643 3211 0111 1111111 13 35677777775432 2799999999999999
Q ss_pred HHHHHHhCCCEEEEhhHHHh
Q 014581 322 AAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 322 a~~~l~aGAd~V~vgtall~ 341 (422)
+.++|.+||++||+|+.|..
T Consensus 345 ~~~al~~ga~~v~~g~~~ag 364 (479)
T PRK07807 345 VALALAAGASNVMIGSWFAG 364 (479)
T ss_pred HHHHHHcCCCeeeccHhhcc
Confidence 99999999999999999864
No 126
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.81 E-value=2.4e-07 Score=84.85 Aligned_cols=144 Identities=18% Similarity=0.203 Sum_probs=100.4
Q ss_pred CCeEEEEeCCCCC----HHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc--cCccEE
Q 014581 149 DKILIASIMEEYN----KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK--ATVPVW 222 (422)
Q Consensus 149 ~~pvi~si~~~~~----~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~--~~iPv~ 222 (422)
+.|+++.++ ..+ .++..+.++.+.++|+|++.+.. |.. .....+.+.+.+.++.+.+. .++|++
T Consensus 48 ~~~v~~~v~-~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 48 DVPVIVVVG-FPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NIG-------SLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CCeEEEEec-CCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cHH-------HHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 378999996 444 67788889999999999998752 211 00112356777788888777 489999
Q ss_pred EEECCCCC-C---hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 223 AKMTPNIT-D---ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 223 vKl~~~~~-~---~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
++..|... . +.++++.+.+.|+++|..+..... ++. .+..++++++.
T Consensus 118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~---------------------~~~--------~~~~~~~i~~~ 168 (201)
T cd00945 118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG---------------------GGA--------TVEDVKLMKEA 168 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC---------------------CCC--------CHHHHHHHHHh
Confidence 99987654 3 344455567899999975532110 010 12445566665
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
.+. +++|+..||+.+.+++.+++.+||+++.++
T Consensus 169 ~~~-----~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 169 VGG-----RVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred ccc-----CCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 531 579999999999999999999999998764
No 127
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.80 E-value=4.7e-07 Score=85.27 Aligned_cols=186 Identities=17% Similarity=0.219 Sum_probs=115.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCEEEEcc----CCCCCCCccccccccccChhHHHHHHHHHhhc-cCccEEEEECC
Q 014581 153 IASIMEEYNKAAWEELIDRVEETGIDAIEVNF----SCPHGMPERKMGAAVGQDCRLLEEVCGWINAK-ATVPVWAKMTP 227 (422)
Q Consensus 153 i~si~~~~~~~~~~~~a~~~~~aGaD~iElN~----scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~-~~iPv~vKl~~ 227 (422)
..||. ..+...+.+-+++++++|+|.+-+++ ..||. .+ .+ ++++++|+. ++.|+=|=|-
T Consensus 3 ~pSil-~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~----tf------g~----~~i~~i~~~~~~~~~dvHLM- 66 (220)
T PRK08883 3 APSIL-SADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL----TF------GA----PICKALRDYGITAPIDVHLM- 66 (220)
T ss_pred chhhh-hcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc----cc------CH----HHHHHHHHhCCCCCEEEEec-
Confidence 45665 45666777788888889999999986 34553 11 12 356666665 4667555443
Q ss_pred CCCChHHHHHHHHHcCCCEEEEecCC----------------cccccccccC----CCCCCC----CCCCCccCCCCCCC
Q 014581 228 NITDITEPARVALRSGSEGVSAINTI----------------MSVMGIDLKT----LRPEPC----VEGYSTPGGYSCKA 283 (422)
Q Consensus 228 ~~~~~~~~a~~l~~aGadgi~v~n~~----------------~~~~~id~e~----~~p~~~----~~~~~~~gG~sG~~ 283 (422)
+.++...++.+.++|+|.|+++--. .....+.+.| .++... +.-.+...|.+|..
T Consensus 67 -v~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~ 145 (220)
T PRK08883 67 -VKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQS 145 (220)
T ss_pred -cCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCce
Confidence 2356677777777788777766210 0001111111 011000 00112345667777
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHH
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKM 360 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~ 360 (422)
..|..++.++++++...+. +.++||.+.|||. .+.+.++..+|||.+.+||+++.. .+ +++..++++..+.+
T Consensus 146 fi~~~lekI~~l~~~~~~~--~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~-~d-~~~~i~~l~~~~~~ 217 (220)
T PRK08883 146 FIPHTLDKLRAVRKMIDES--GRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQ-PD-YKAVIDEMRAELAK 217 (220)
T ss_pred ecHhHHHHHHHHHHHHHhc--CCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCC-CC-HHHHHHHHHHHHHh
Confidence 7788899999998876432 1258999999998 999999999999999999998864 33 33444445444443
No 128
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.76 E-value=1.2e-07 Score=107.73 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=107.2
Q ss_pred cChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 201 QDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 201 ~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
..++.+.+++..+|+.. ..||.||+... ..+..++.-+.++|+|.|++.+.-++. +- .|... ....|+
T Consensus 978 ySieDL~qlI~~Lk~~~~~~~I~VKl~a~-~~vg~ia~gvaka~aD~I~IdG~~GGT-GA-----ap~~~----~~~~Gl 1046 (1485)
T PRK11750 978 YSIEDLAQLIFDLKQVNPKALVSVKLVSE-PGVGTIATGVAKAYADLITISGYDGGT-GA-----SPLTS----VKYAGS 1046 (1485)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEccC-CCccHHHhChhhcCCCEEEEeCCCCCc-cc-----ccHHH----HhhCCc
Confidence 35677889999999887 67999999864 334456656778999999999865441 11 11100 012232
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh-----------------
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----------------- 342 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----------------- 342 (422)
|.-+ .+.+..+.+...--+.++.|+++||+.|+.|+++++++|||.|.+||++|.-
T Consensus 1047 ------P~e~-gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvG 1119 (1485)
T PRK11750 1047 ------PWEL-GLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATG 1119 (1485)
T ss_pred ------cHHH-HHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcE
Confidence 2211 2334444432211113699999999999999999999999999999988740
Q ss_pred ----h-----------h----HHHHHHHHHHHHHHHHcCCCCHHHhhcC
Q 014581 343 ----G-----------Y----GLVKRLCEELKDFMKMHNFSSIEDFRGA 372 (422)
Q Consensus 343 ----G-----------p----~~i~~i~~~l~~~m~~~G~~si~d~~G~ 372 (422)
. + .++.-+.++++++|...|++|++|++|.
T Consensus 1120 iaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~elvGr 1168 (1485)
T PRK11750 1120 VATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDLIGR 1168 (1485)
T ss_pred EeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcCc
Confidence 1 1 1345667899999999999999999987
No 129
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.76 E-value=3e-07 Score=92.65 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=96.9
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCC
Q 014581 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSE 245 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGad 245 (422)
.+.++.+++.+++. .+++.+.++++++|+.. +.+|++.+..+..++++.+.++|+|
T Consensus 102 a~aa~~~~e~~~~~---------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad 157 (369)
T TIGR01304 102 AAATRLLQELHAAP---------------------LKPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGAD 157 (369)
T ss_pred HHHHHHHHHcCCCc---------------------cChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCC
Confidence 66777777766554 24677899999999863 7777765444678999999999999
Q ss_pred EEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHH
Q 014581 246 GVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEF 325 (422)
Q Consensus 246 gi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~ 325 (422)
.|++++|+.... + .+|.. .| ..+.++.+.+ ++|||+ |+|.+.+++.++
T Consensus 158 ~I~ihgrt~~q~------------------~--~sg~~-~p---~~l~~~i~~~-------~IPVI~-G~V~t~e~A~~~ 205 (369)
T TIGR01304 158 LLVIQGTLVSAE------------------H--VSTSG-EP---LNLKEFIGEL-------DVPVIA-GGVNDYTTALHL 205 (369)
T ss_pred EEEEeccchhhh------------------c--cCCCC-CH---HHHHHHHHHC-------CCCEEE-eCCCCHHHHHHH
Confidence 999999874310 0 01111 12 2344555554 799997 999999999999
Q ss_pred HHhCCCEEEEhhHHHhh-------h-h--HHHHHHHHHHHHHHHHcC
Q 014581 326 ILLGANTVQVCTGVMMH-------G-Y--GLVKRLCEELKDFMKMHN 362 (422)
Q Consensus 326 l~aGAd~V~vgtall~~-------G-p--~~i~~i~~~l~~~m~~~G 362 (422)
+.+|||+|++|+.-... + | ..+.++....++|+++.|
T Consensus 206 ~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g 252 (369)
T TIGR01304 206 MRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETG 252 (369)
T ss_pred HHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999988533111 1 2 134455555566777665
No 130
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.73 E-value=1e-05 Score=79.47 Aligned_cols=207 Identities=17% Similarity=0.164 Sum_probs=129.0
Q ss_pred cceEeCCeecCCCceecCCCCCCCHHHHHHHHH-cCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccc
Q 014581 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENI 125 (422)
Q Consensus 47 L~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~-~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~ 125 (422)
-..++.|.+|.+.++++.|-. .+.+.+++..+ +|.-.|++ ..+ |.. +.+.
T Consensus 73 ~~~~i~~~~~~sRl~~Gtg~y-~s~~~~~~a~~asg~e~vTv---a~r---------r~~----------------~~~~ 123 (326)
T PRK11840 73 DSWTVAGKTFSSRLLVGTGKY-KDFEETAAAVEASGAEIVTV---AVR---------RVN----------------VSDP 123 (326)
T ss_pred CCeEECCEEEecceeEecCCC-CCHHHHHHHHHHhCCCEEEE---EEE---------eec----------------CcCC
Confidence 358999999999999999888 56766666655 68775542 221 110 0000
Q ss_pred cccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCCEEEEccCCCCCCCccccccccccChh
Q 014581 126 ELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCR 204 (422)
Q Consensus 126 ~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a-GaD~iElN~scP~~~~~~~~G~~l~~~~~ 204 (422)
+ -+.+++.|+.. +..+..|-.++++.++....|+...++ |-|.|-|.+--.+.. +..|+.
T Consensus 124 ~------~~~~~~~~~~~-----~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~--------llpd~~ 184 (326)
T PRK11840 124 G------APMLTDYIDPK-----KYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKT--------LYPDMV 184 (326)
T ss_pred C------cchHHHhhhhc-----CCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCC--------cccCHH
Confidence 0 11222223211 346777887788999999999988886 678888876433321 122332
Q ss_pred HHHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 205 LLEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 205 ~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
+.+++.++.+ +.-+++-++++ ...++++.+.|+-+|.-... |. | ||.
T Consensus 185 ---~~v~aa~~L~~~Gf~v~~yc~~d----~~~a~~l~~~g~~avmPl~~-------------pI---------G--sg~ 233 (326)
T PRK11840 185 ---ETLKATEILVKEGFQVMVYCSDD----PIAAKRLEDAGAVAVMPLGA-------------PI---------G--SGL 233 (326)
T ss_pred ---HHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHhcCCEEEeeccc-------------cc---------c--CCC
Confidence 2333333221 33343444443 56899999999844421110 10 1 222
Q ss_pred Cc-chhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 283 AV-HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 283 ~i-~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.+ .| +.|+.+.+.. ++||+..+||.+++|+.+++++|||+|.+.|++...
T Consensus 234 gv~~p---~~i~~~~e~~-------~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 234 GIQNP---YTIRLIVEGA-------TVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred CCCCH---HHHHHHHHcC-------CCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccC
Confidence 22 23 3455555553 799999999999999999999999999999999863
No 131
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=98.66 E-value=1.3e-05 Score=78.38 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=138.9
Q ss_pred ceecCCCCCCCHHHHHHHHHc---------CCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCC
Q 014581 60 FVIGSGPPGTNYTVMKRAFDE---------GWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISD 130 (422)
Q Consensus 60 i~~AAg~~~~~~~~~~~~~~~---------G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~ 130 (422)
.++..|.+ ++-..+-+.++ ||-++-+-+... ..+.|++..++++
T Consensus 10 ~l~~p~~~--D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~------------------------a~s~G~pD~~~~~- 62 (285)
T TIGR02320 10 LERLMEAH--NGLSALIAEEARVEVGGESLGFDGIWSSSLTD------------------------STSRGVPDIEEAS- 62 (285)
T ss_pred CEEEecCc--CHHHHHHHHHhhhcccCcCCCcCEEEechHHH------------------------HHHCCCCCcCcCC-
Confidence 34444443 45556666677 888777655432 1234666656544
Q ss_pred ChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEc-----cCCCCCCCccccccccccChhH
Q 014581 131 RPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVN-----FSCPHGMPERKMGAAVGQDCRL 205 (422)
Q Consensus 131 ~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN-----~scP~~~~~~~~G~~l~~~~~~ 205 (422)
.+++++.++.+.... +.||++-+-.+-++..+.+.+++++++|+.+|.|. =-|.|.... |....-+.+.
T Consensus 63 --~~e~~~~~~~I~~a~-~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~---~~~~l~s~ee 136 (285)
T TIGR02320 63 --WTQRLDVVEFMFDVT-TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGND---VAQPQASVEE 136 (285)
T ss_pred --HHHHHHHHHHHHhhc-CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCC---CcccccCHHH
Confidence 788888888777654 78999988655678888999999999999999882 123332110 0111123444
Q ss_pred HHHHHHHHhhc---cCccEEEEECC-----CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 206 LEEVCGWINAK---ATVPVWAKMTP-----NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 206 v~~iv~~vr~~---~~iPv~vKl~~-----~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
..+.+++++++ .+++|+++.-. .+++..+-+++..++|||+|.+.....
T Consensus 137 ~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~----------------------- 193 (285)
T TIGR02320 137 FCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKK----------------------- 193 (285)
T ss_pred HHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCC-----------------------
Confidence 44555555543 26788887222 233456678889999999997652110
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHH
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDF 357 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~ 357 (422)
+.+.+.++.+.++..+| ++|++.+.+-.-.-++.++-.+|.+.|..+..++.. .++.+.+.++++
T Consensus 194 ----------~~~ei~~~~~~~~~~~p--~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a---a~~a~~~~~~~~ 258 (285)
T TIGR02320 194 ----------DPDEILEFARRFRNHYP--RTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA---AYAAMQQVAERI 258 (285)
T ss_pred ----------CHHHHHHHHHHhhhhCC--CCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH---HHHHHHHHHHHH
Confidence 12334445555533222 568777654222235677778999999999888765 334444444444
Q ss_pred HH
Q 014581 358 MK 359 (422)
Q Consensus 358 m~ 359 (422)
++
T Consensus 259 ~~ 260 (285)
T TIGR02320 259 LE 260 (285)
T ss_pred HH
Confidence 43
No 132
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=1.9e-06 Score=78.56 Aligned_cols=153 Identities=22% Similarity=0.226 Sum_probs=98.4
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCCHH-----HHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChh-HHHHHHH
Q 014581 138 KEFKQLKALYPDKILIASIMEEYNKA-----AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCR-LLEEVCG 211 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~~~~-----~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~-~v~~iv~ 211 (422)
+.|+.++... +.|+|.-|..++... .+.+-++.+.++|++.|-++.-+. .+|+ .+.++++
T Consensus 56 ~dIkai~~~v-~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R-------------~RP~~~~~~~i~ 121 (229)
T COG3010 56 EDIKAIRAVV-DVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDR-------------PRPDGDLEELIA 121 (229)
T ss_pred hhHHHHHhhC-CCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccC-------------CCCcchHHHHHH
Confidence 3456666654 889998886544221 234445667778999999885322 2344 6777887
Q ss_pred HHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHH
Q 014581 212 WINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGK 291 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~ 291 (422)
..+. .+.=++.-++ ..+-+..+.++|+|.| +|+... |-+++-.+ ....+..
T Consensus 122 ~~k~-~~~l~MAD~S-----t~ee~l~a~~~G~D~I---GTTLsG-------------------YT~~~~~~-~~pDf~l 172 (229)
T COG3010 122 RIKY-PGQLAMADCS-----TFEEGLNAHKLGFDII---GTTLSG-------------------YTGYTEKP-TEPDFQL 172 (229)
T ss_pred Hhhc-CCcEEEeccC-----CHHHHHHHHHcCCcEE---eccccc-------------------ccCCCCCC-CCCcHHH
Confidence 7432 2333444332 2445777889999977 433221 11110000 1123456
Q ss_pred HHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 292 VMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 292 v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
++++.+. +++||+-|.+.||+++.+++..||++|.||+++-+
T Consensus 173 vk~l~~~--------~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR 214 (229)
T COG3010 173 VKQLSDA--------GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR 214 (229)
T ss_pred HHHHHhC--------CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC
Confidence 6666652 89999999999999999999999999999999865
No 133
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.65 E-value=1e-06 Score=81.97 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=105.3
Q ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCEEEEcc-CCCCCCCccccccccccChhHHHHHHHHHhhccCccE--EEEECCCCC
Q 014581 154 ASIMEEYNKAAWEELIDRVEETGIDAIEVNF-SCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPV--WAKMTPNIT 230 (422)
Q Consensus 154 ~si~~~~~~~~~~~~a~~~~~aGaD~iElN~-scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv--~vKl~~~~~ 230 (422)
+||. ..+.+.+.+.++.+.+.|+|.|++.+ .+|...+ ....-+.++++++.++.|+ -++..
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~-----------~~~~~~~v~~i~~~~~~~v~v~lm~~---- 66 (210)
T TIGR01163 3 PSIL-SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPN-----------LTFGPPVLEALRKYTDLPIDVHLMVE---- 66 (210)
T ss_pred chhh-cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC-----------cccCHHHHHHHHhcCCCcEEEEeeeC----
Confidence 4565 45677888899999999999999984 2222111 0112245555655556675 35543
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCccc----------cccc------ccCC----CCCC-CCCC--C-CccCCCCCCCcch
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSV----------MGID------LKTL----RPEP-CVEG--Y-STPGGYSCKAVHP 286 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~----------~~id------~e~~----~p~~-~~~~--~-~~~gG~sG~~i~p 286 (422)
+..++++.+.++|+|+|+++...... .++. ..+. +... .... + +...|.+|....+
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 146 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIP 146 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccH
Confidence 45678888999999999888642110 0111 1110 0000 0000 0 0112445544456
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
..++.+.++++...+.. .++||.+.|||+ ++++.+++..|||.+.+||+++..
T Consensus 147 ~~~~~i~~i~~~~~~~~--~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 147 DTLEKIREVRKMIDENG--LSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred HHHHHHHHHHHHHHhcC--CCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 67777777777664211 147999999995 799999999999999999999864
No 134
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.65 E-value=2e-07 Score=89.12 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++++.+.+.|++.+++++.... +.. ++..++.++++++.+ ++|
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~----------------------~~~----~~~~~~~i~~i~~~~-------~~p 73 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITAS----------------------SEG----RETMLDVVERVAEEV-------FIP 73 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcc----------------------ccc----CcccHHHHHHHHHhC-------CCC
Confidence 37889999999999999999986532 000 123467788888875 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|+++|||.+.+|+.+++..||+.|+++|+++.+ |+++.++.+.+
T Consensus 74 v~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~-p~~~~~i~~~~ 117 (243)
T cd04731 74 LTVGGGIRSLEDARRLLRAGADKVSINSAAVEN-PELIREIAKRF 117 (243)
T ss_pred EEEeCCCCCHHHHHHHHHcCCceEEECchhhhC-hHHHHHHHHHc
Confidence 999999999999999999999999999999988 89888887654
No 135
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.62 E-value=2.5e-06 Score=80.96 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=114.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccC----CCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEE
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFS----CPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKM 225 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~s----cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl 225 (422)
.+.+||. +.+...+.+.+++++++|+|.+-+++- .||. .+| + ++++++|+.+ ++|+-+|+
T Consensus 8 ~i~pSi~-~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~----~~G------~----~~v~~lr~~~~~~~lDvHL 72 (228)
T PTZ00170 8 IIAPSIL-AADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL----SFG------P----PVVKSLRKHLPNTFLDCHL 72 (228)
T ss_pred EEehhHh-hcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc----CcC------H----HHHHHHHhcCCCCCEEEEE
Confidence 3567887 467777888889999999999999873 4553 111 2 4677777776 89999999
Q ss_pred CCCCCChHHHHHHHHHcCCCEEEEecCCcc---------------cccccccC------CCCCC--C----CCCCCccCC
Q 014581 226 TPNITDITEPARVALRSGSEGVSAINTIMS---------------VMGIDLKT------LRPEP--C----VEGYSTPGG 278 (422)
Q Consensus 226 ~~~~~~~~~~a~~l~~aGadgi~v~n~~~~---------------~~~id~e~------~~p~~--~----~~~~~~~gG 278 (422)
-+ .++...++.+.++|+|.++++.-... ..++.+.. .++.. . +...+..-|
T Consensus 73 m~--~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG 150 (228)
T PTZ00170 73 MV--SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPG 150 (228)
T ss_pred CC--CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccC
Confidence 74 36777888899999999988742110 01111111 11110 0 001122345
Q ss_pred CCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 279 ~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
..|....|..+..++++++..+ +..|...|||+ .+.+.++..+|||.+.+||+++..
T Consensus 151 ~~gq~~~~~~~~ki~~~~~~~~------~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 151 FGGQSFMHDMMPKVRELRKRYP------HLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA 207 (228)
T ss_pred CCCcEecHHHHHHHHHHHHhcc------cCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC
Confidence 5565555667777888877653 57799999996 789999999999999999998864
No 136
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.61 E-value=3.3e-07 Score=88.32 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+.+.+.|++.+++++..... + - .+..++.++++++.+ ++|
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~------~---------------~-----~~~n~~~i~~i~~~~-------~~p 76 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASS------E---------------G-----RTTMIDVVERTAETV-------FIP 76 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccc------c---------------c-----ChhhHHHHHHHHHhc-------CCC
Confidence 378899999999999999999865320 0 0 133567888888876 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|+++|||+|.+|+.+++.+||+.|++||+++.+ |++++++.+..
T Consensus 77 v~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~-p~~~~~~~~~~ 120 (254)
T TIGR00735 77 LTVGGGIKSIEDVDKLLRAGADKVSINTAAVKN-PELIYELADRF 120 (254)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEChhHhhC-hHHHHHHHHHc
Confidence 999999999999999999999999999999988 88888876543
No 137
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=98.59 E-value=6.8e-07 Score=89.46 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhCCCEEEEcc---------CCCCCCCcc--ccccccccChhHHHHHHHHHhhcc-CccEEEEECC-----
Q 014581 165 WEELIDRVEETGIDAIEVNF---------SCPHGMPER--KMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTP----- 227 (422)
Q Consensus 165 ~~~~a~~~~~aGaD~iElN~---------scP~~~~~~--~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~----- 227 (422)
+..+++.+.++|+|+||||- -.|.+ +.| .||++++++...+-|++++|+++. .--+++.+++
T Consensus 176 fv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~-NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq 254 (400)
T KOG0134|consen 176 FVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTT-NDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEFQ 254 (400)
T ss_pred HHHHHHHHHhcCCCeEEEecccchhhhhhccCCC-CCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhhh
Confidence 44556666689999999983 35665 333 599999999999999999998875 1123344444
Q ss_pred ----CCCChHHHHHHHHHcCCCEEEEecCCcccccc-cccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhcc
Q 014581 228 ----NITDITEPARVALRSGSEGVSAINTIMSVMGI-DLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSE 302 (422)
Q Consensus 228 ----~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~i-d~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~ 302 (422)
..++...++.....-|.|.+-++|...-. .+ -++.+...+. ..++. ++....++....
T Consensus 255 ~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~-~~h~i~~R~~~~~-----~~~~~---------~~f~e~~r~~~k-- 317 (400)
T KOG0134|consen 255 DIGITIDDAIKMCGLYEDGGLDFVELTGGTFLA-YVHFIEPRQSTIA-----REAFF---------VEFAETIRPVFK-- 317 (400)
T ss_pred hccccccchHHHHHHHHhcccchhhccCchhhh-hhhhccccccccc-----cccch---------hhhhhHHHHHhc--
Confidence 12345677888889999977776543211 11 0111100000 01111 234445666653
Q ss_pred CCCCCceEEEecCCCCHHHHHHHHHhCCC-EEEEhhHHHhhhhHHHHHHHHHH
Q 014581 303 FNDKDYSLSGIGGVETGGDAAEFILLGAN-TVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 303 ~~~~~ipIIa~GGI~s~~da~~~l~aGAd-~V~vgtall~~Gp~~i~~i~~~l 354 (422)
+.-|.+.||..+.+.+.+++..|.. +|..||.++.+ |++++++..++
T Consensus 318 ----gt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~an-PDLp~rl~~~~ 365 (400)
T KOG0134|consen 318 ----GTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLAN-PDLPKRLLNGL 365 (400)
T ss_pred ----CcEEEecCCccCHHHHHHHHhcCCceeEEecchhccC-CchhHHHHhCC
Confidence 5667888899999999999999876 99999999999 99999998775
No 138
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.59 E-value=4.1e-06 Score=77.48 Aligned_cols=149 Identities=20% Similarity=0.261 Sum_probs=97.8
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.++.+++.+++.|+++-++- .++.. ..++.+.++|+|++-++...+ ++...++++.+++. +
T Consensus 43 ~i~~i~~~~~~~~i~~~~~v-~~~~~--~~~~~~~~aGad~i~~h~~~~---------------~~~~~~~i~~~~~~-g 103 (202)
T cd04726 43 AVRALREAFPDKIIVADLKT-ADAGA--LEAEMAFKAGADIVTVLGAAP---------------LSTIKKAVKAAKKY-G 103 (202)
T ss_pred HHHHHHHHCCCCEEEEEEEe-ccccH--HHHHHHHhcCCCEEEEEeeCC---------------HHHHHHHHHHHHHc-C
Confidence 45666665568899887652 23322 234667788999999885321 13356677777764 6
Q ss_pred ccEEEE-ECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 219 VPVWAK-MTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 219 iPv~vK-l~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
+++++= +++. +..+..+ +...|+|.+.+.-.. +..+ .+. +...+.++++++
T Consensus 104 ~~~~v~~~~~~--t~~e~~~-~~~~~~d~v~~~~~~------~~~~------------~~~-------~~~~~~i~~~~~ 155 (202)
T cd04726 104 KEVQVDLIGVE--DPEKRAK-LLKLGVDIVILHRGI------DAQA------------AGG-------WWPEDDLKKVKK 155 (202)
T ss_pred CeEEEEEeCCC--CHHHHHH-HHHCCCCEEEEcCcc------cccc------------cCC-------CCCHHHHHHHHh
Confidence 777664 4443 4455554 788899988763111 1000 110 123455666665
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.. ++||++.|||+ ++++.+++.+|||+|.+||+++..
T Consensus 156 ~~-------~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~~ 192 (202)
T cd04726 156 LL-------GVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITGA 192 (202)
T ss_pred hc-------CCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcCC
Confidence 42 79999999995 999999999999999999999864
No 139
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.58 E-value=4.1e-07 Score=87.56 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++++.+.+.|++.+++++..... + . .+..++.++++++.+ ++|
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~------~---------------~-----~~~~~~~i~~i~~~~-------~ip 76 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASS------E---------------G-----RDTMLDVVERVAEQV-------FIP 76 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccc------c---------------c-----CcchHHHHHHHHHhC-------CCC
Confidence 478899999999999999999865320 0 0 133467888888876 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|+++|||.+.+|+.+++..||+.|+++|+++.+ |++++++.+.+
T Consensus 77 v~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~-p~~~~ei~~~~ 120 (253)
T PRK02083 77 LTVGGGIRSVEDARRLLRAGADKVSINSAAVAN-PELISEAADRF 120 (253)
T ss_pred EEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC-cHHHHHHHHHc
Confidence 999999999999999999999999999999998 88887776553
No 140
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.58 E-value=2.2e-06 Score=79.66 Aligned_cols=151 Identities=21% Similarity=0.150 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEEC------CCC-------
Q 014581 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT------PNI------- 229 (422)
Q Consensus 163 ~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~------~~~------- 229 (422)
++..++++++.++|+|+|++.-| .+-+.+.+.++++++|+.+++|+++--+ +..
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS-------------~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~s 77 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGS-------------LGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFMS 77 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCc-------------CCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEEE
Confidence 55677888899999999998632 2346688999999999988999998522 111
Q ss_pred ----CCh----HHHHHHH---HHcCC----CEEEEecCCcccccccccCCCCCCCC--------------CCCC--ccCC
Q 014581 230 ----TDI----TEPARVA---LRSGS----EGVSAINTIMSVMGIDLKTLRPEPCV--------------EGYS--TPGG 278 (422)
Q Consensus 230 ----~~~----~~~a~~l---~~aGa----dgi~v~n~~~~~~~id~e~~~p~~~~--------------~~~~--~~gG 278 (422)
.+. ..-.+.+ ++.|. .|-.+.|..... + .+-+.++.|.. .|.. ..-.
T Consensus 78 llns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v-~-~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~ 155 (205)
T TIGR01769 78 LLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAV-G-YVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEA 155 (205)
T ss_pred eecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCce-e-eecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 011 1112222 56663 233344432110 0 00001111110 0100 0011
Q ss_pred CCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 279 ~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
.||. .++...+.++++++.+ ++|++..|||++.+++.+++.+|||.|.+|
T Consensus 156 ~sGa-~~~v~~e~i~~Vk~~~-------~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 156 GSGA-SYPVNPETISLVKKAS-------GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCCC-CCCCCHHHHHHHHHhh-------CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 2343 3455678888998876 799999999999999999999999999886
No 141
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.58 E-value=1.3e-05 Score=74.46 Aligned_cols=210 Identities=20% Similarity=0.185 Sum_probs=129.6
Q ss_pred CCcceEeCCeecCCCceecCCCCCCCHHHHHHHHH-cCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccc
Q 014581 45 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWE 123 (422)
Q Consensus 45 ~dL~~~~~Gl~l~nPi~~AAg~~~~~~~~~~~~~~-~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~ 123 (422)
.+-..++.|.+|.+.++++.|-. .+.+.++...+ +|.-.++ +..+ |..-...
T Consensus 4 ~~d~l~i~g~~f~SRLllGTgky-~s~~~~~~av~asg~~ivT---vAlR---------R~~~~~~-------------- 56 (262)
T COG2022 4 KDDMLTIAGKTFDSRLLLGTGKY-PSPAVLAEAVRASGSEIVT---VALR---------RVNATRP-------------- 56 (262)
T ss_pred cccceeecCeeeeeeEEEecCCC-CCHHHHHHHHHhcCCceEE---EEEE---------eecccCC--------------
Confidence 35567899999999999999888 56666666655 5766443 2221 1100000
Q ss_pred cccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCCEEEEccC-CCCCCCcccccccccc
Q 014581 124 NIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFS-CPHGMPERKMGAAVGQ 201 (422)
Q Consensus 124 n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a-GaD~iElN~s-cP~~~~~~~~G~~l~~ 201 (422)
+ -+.+++.++. .+..+..|-.++++.++.+..|+...++ +-|.|-|.+. ++.+ +..
T Consensus 57 --~------~~~~l~~l~~-----~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~t---------LlP 114 (262)
T COG2022 57 --G------GDGILDLLIP-----LGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKT---------LLP 114 (262)
T ss_pred --C------cchHHHHhhh-----cCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcc---------cCC
Confidence 0 1222222221 1556777887778999999999988875 5788877753 3332 223
Q ss_pred ChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 202 DCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 202 ~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
|+-.+-+-.+.+.+. ..-|+ |+.++-.-+|+++++.|+..|.=.+. |. ++.-|+.
T Consensus 115 D~~etl~Aae~Lv~e-GF~Vl----PY~~dD~v~arrLee~GcaavMPl~a-------------PI------GSg~G~~- 169 (262)
T COG2022 115 DPIETLKAAEQLVKE-GFVVL----PYTTDDPVLARRLEEAGCAAVMPLGA-------------PI------GSGLGLQ- 169 (262)
T ss_pred ChHHHHHHHHHHHhC-CCEEe----eccCCCHHHHHHHHhcCceEeccccc-------------cc------cCCcCcC-
Confidence 332222222222111 33344 44444456899999999988742221 10 0011221
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.| ..++.+++.. ++|||..-||-++.|+.+++++|+|+|.+-|++-.
T Consensus 170 ---n~---~~l~iiie~a-------~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~ 216 (262)
T COG2022 170 ---NP---YNLEIIIEEA-------DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAR 216 (262)
T ss_pred ---CH---HHHHHHHHhC-------CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhc
Confidence 23 3445566654 89999999999999999999999999999999875
No 142
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=98.57 E-value=6.3e-06 Score=77.74 Aligned_cols=172 Identities=21% Similarity=0.222 Sum_probs=113.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEcc----CCCCCCCccccccccccChhHHHHHHHHHhhc-cCccEEEEE
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNF----SCPHGMPERKMGAAVGQDCRLLEEVCGWINAK-ATVPVWAKM 225 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~----scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~-~~iPv~vKl 225 (422)
.+..||. ..+...+.+-+++++++|+|.+-+++ ..||. .+| + ++++++|+. +++|+=|=|
T Consensus 5 ~i~pSil-~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~----tfg------~----~~i~~lr~~~~~~~~dvHL 69 (223)
T PRK08745 5 AIAPSIL-SADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL----TIG------P----MVCQALRKHGITAPIDVHL 69 (223)
T ss_pred EEEeehh-hcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc----ccC------H----HHHHHHHhhCCCCCEEEEe
Confidence 3677887 45677778888899999999999986 35653 111 2 356677776 577765544
Q ss_pred CCCCCChHHHHHHHHHcCCCEEEEecCC----------------cccccccccC----CCCCCC----CCCCCccCCCCC
Q 014581 226 TPNITDITEPARVALRSGSEGVSAINTI----------------MSVMGIDLKT----LRPEPC----VEGYSTPGGYSC 281 (422)
Q Consensus 226 ~~~~~~~~~~a~~l~~aGadgi~v~n~~----------------~~~~~id~e~----~~p~~~----~~~~~~~gG~sG 281 (422)
- +.++...++.+.++|+|.|+++--. .....++++| .++... +.-.+..-|+.|
T Consensus 70 M--v~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~G 147 (223)
T PRK08745 70 M--VEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGG 147 (223)
T ss_pred c--cCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCC
Confidence 3 2356677777888888888776210 0001112211 011000 001123456778
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
....|.+++.|+++++...+.. .++.|-..|||. .+.+.++..+|||.+.+||+++..
T Consensus 148 Q~fi~~~l~KI~~l~~~~~~~~--~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 148 QAFIPSALDKLRAIRKKIDALG--KPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNA 205 (223)
T ss_pred ccccHHHHHHHHHHHHHHHhcC--CCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCC
Confidence 7778888999999888765421 257799999996 899999999999999999998854
No 143
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.55 E-value=1.2e-05 Score=76.14 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=97.3
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccC-CCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFS-CPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~s-cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
++.+++. ++.++-+-++ -.+++++.+.+ .++|+|++-+++. +.. +...+.++.+++. +
T Consensus 57 ~~~l~~~-~~~~~~vhlm-v~~p~d~~~~~---~~~gad~v~vH~~q~~~---------------d~~~~~~~~i~~~-g 115 (229)
T PLN02334 57 VKALRKH-TDAPLDCHLM-VTNPEDYVPDF---AKAGASIFTFHIEQAST---------------IHLHRLIQQIKSA-G 115 (229)
T ss_pred HHHHHhc-CCCcEEEEec-cCCHHHHHHHH---HHcCCCEEEEeeccccc---------------hhHHHHHHHHHHC-C
Confidence 3444443 4667778787 34677766554 4569999988864 111 2234555666554 3
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcC-CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSG-SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
.-+.+-+.|+ ...+.++.+.+.| +|.|.+..-.+ |.+|....|..++.++++++
T Consensus 116 ~~iGls~~~~--t~~~~~~~~~~~~~~Dyi~~~~v~p-----------------------g~~~~~~~~~~~~~i~~~~~ 170 (229)
T PLN02334 116 MKAGVVLNPG--TPVEAVEPVVEKGLVDMVLVMSVEP-----------------------GFGGQSFIPSMMDKVRALRK 170 (229)
T ss_pred CeEEEEECCC--CCHHHHHHHHhccCCCEEEEEEEec-----------------------CCCccccCHHHHHHHHHHHH
Confidence 4345545443 2355666666664 99986532111 11122223667777888877
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
... ++||.+.||| +.+++.+++.+|||.|.+||+++..
T Consensus 171 ~~~------~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 171 KYP------ELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred hCC------CCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCC
Confidence 642 6899999999 6999999999999999999999864
No 144
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.53 E-value=6.3e-06 Score=79.68 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=96.6
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.++.+++.. +.||+.. .+-...+ -+..+.++|||+|-|..... +++.++++++..++. +
T Consensus 102 ~l~~v~~~v-~iPvl~k---dfi~~~~--qi~~a~~~GAD~VlLi~~~l--------------~~~~l~~li~~a~~l-G 160 (260)
T PRK00278 102 YLRAARAAV-SLPVLRK---DFIIDPY--QIYEARAAGADAILLIVAAL--------------DDEQLKELLDYAHSL-G 160 (260)
T ss_pred HHHHHHHhc-CCCEEee---eecCCHH--HHHHHHHcCCCEEEEEeccC--------------CHHHHHHHHHHHHHc-C
Confidence 455555543 7899862 2322333 24556678999998875321 235677888877664 6
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
.-++|=+ .+..+ ++.+.++|+|.|.+.|+. ..+.++ .+..+.++.+.
T Consensus 161 l~~lvev----h~~~E-~~~A~~~gadiIgin~rd-------l~~~~~---------------------d~~~~~~l~~~ 207 (260)
T PRK00278 161 LDVLVEV----HDEEE-LERALKLGAPLIGINNRN-------LKTFEV---------------------DLETTERLAPL 207 (260)
T ss_pred CeEEEEe----CCHHH-HHHHHHcCCCEEEECCCC-------cccccC---------------------CHHHHHHHHHh
Confidence 6666543 23333 466778999988765532 222111 13344566665
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+++ +.++|+.|||.+++|+.+++.+|||+|.+||+++..
T Consensus 208 ~p~-----~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 208 IPS-----DRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred CCC-----CCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 542 479999999999999999999999999999999975
No 145
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.51 E-value=1.5e-05 Score=74.64 Aligned_cols=137 Identities=20% Similarity=0.212 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhCCCCe-EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHh
Q 014581 136 MLKEFKQLKALYPDKI-LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWIN 214 (422)
Q Consensus 136 ~l~~i~~~k~~~~~~p-vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr 214 (422)
+++.|+++++++++.| +.+-.+.-.+.++ ++.+.++|++++. +|+. ++ +++++.+
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~----~~~a~~aGA~Fiv----sP~~------------~~----~v~~~~~ 106 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVT----ARLAILAGAQFIV----SPSF------------NR----ETAKICN 106 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHH----HHHHHHcCCCEEE----CCCC------------CH----HHHHHHH
Confidence 4456777777675433 4433321135554 4666778999986 5653 22 3444443
Q ss_pred hccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHH
Q 014581 215 AKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMS 294 (422)
Q Consensus 215 ~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~ 294 (422)
+. ++|++ |...+..++ ..+.++|+|.|.++-.. ..| ...++.
T Consensus 107 ~~-~i~~i----PG~~T~~E~-~~A~~~Gad~vklFPa~----------------------~~G----------~~~ik~ 148 (213)
T PRK06552 107 LY-QIPYL----PGCMTVTEI-VTALEAGSEIVKLFPGS----------------------TLG----------PSFIKA 148 (213)
T ss_pred Hc-CCCEE----CCcCCHHHH-HHHHHcCCCEEEECCcc----------------------cCC----------HHHHHH
Confidence 33 88887 555555554 55678999999874210 011 245666
Q ss_pred HHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 295 IAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 295 i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
++..++ ++|++++|||. .+++.+++.+||++|.++|.++.
T Consensus 149 l~~~~p------~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 149 IKGPLP------QVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred HhhhCC------CCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 776653 69999999996 89999999999999999999974
No 146
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=9.1e-06 Score=75.52 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=117.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEcc----CCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEE
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNF----SCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~----scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl 225 (422)
..+..||. ..+...+.+-+++++++|+|.+-+++ .+||. .+| -.+++++++.++.|+-|=|
T Consensus 4 ~~iapSIL-saD~~~l~~el~~~~~agad~iH~DVMDghFVPNi----TfG----------p~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 4 MKIAPSIL-SADFARLGEELKALEAAGADLIHIDVMDGHFVPNI----TFG----------PPVVKALRKITDLPLDVHL 68 (220)
T ss_pred ceeeeehh-hCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCc----ccC----------HHHHHHHhhcCCCceEEEE
Confidence 45777886 45666677778888899999999987 35663 122 2467777777788877765
Q ss_pred CCCCCChHHHHHHHHHcCCCEEEEecCCcc--------------ccc--ccccC----CCCCCC----CCCCCccCCCCC
Q 014581 226 TPNITDITEPARVALRSGSEGVSAINTIMS--------------VMG--IDLKT----LRPEPC----VEGYSTPGGYSC 281 (422)
Q Consensus 226 ~~~~~~~~~~a~~l~~aGadgi~v~n~~~~--------------~~~--id~e~----~~p~~~----~~~~~~~gG~sG 281 (422)
- +.++...++.+.++|+|.|+++--... ..+ +.++| .++... +.-.+..-|++|
T Consensus 69 M--V~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgG 146 (220)
T COG0036 69 M--VENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGG 146 (220)
T ss_pred e--cCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcc
Confidence 4 345677888888888888877631000 011 11111 011000 001133466777
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhH
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 345 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~ 345 (422)
...-|..++.|+++++...++ .++-|-..|||. .+.+.++..+|||.+..||+++.. .+
T Consensus 147 Q~Fi~~~l~Ki~~lr~~~~~~---~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~~-~d 205 (220)
T COG0036 147 QKFIPEVLEKIRELRAMIDER---LDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFGA-DD 205 (220)
T ss_pred cccCHHHHHHHHHHHHHhccc---CCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeCC-cc
Confidence 777799999999999987542 167899999995 889999999999999999977765 44
No 147
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.50 E-value=9.8e-06 Score=77.15 Aligned_cols=150 Identities=16% Similarity=0.083 Sum_probs=97.1
Q ss_pred HHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc
Q 014581 139 EFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
.|+++.+.. +.| +++++|. +.++ ++++-++|++-+.+|.. ...+|+.++++.+..-+..
T Consensus 67 ~I~~i~~~~-~~p--i~vGGGIrs~e~----v~~~l~~Ga~kvvigt~-------------a~~~~~~l~~~~~~fg~~i 126 (234)
T PRK13587 67 YIKSLRRLT-TKD--IEVGGGIRTKSQ----IMDYFAAGINYCIVGTK-------------GIQDTDWLKEMAHTFPGRI 126 (234)
T ss_pred HHHHHHhhc-CCe--EEEcCCcCCHHH----HHHHHHCCCCEEEECch-------------HhcCHHHHHHHHHHcCCCE
Confidence 355555432 556 4565443 3444 45555679999988742 1256788888877653211
Q ss_pred CccEEEE-----ECCC----CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 218 TVPVWAK-----MTPN----ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 218 ~iPv~vK-----l~~~----~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
-+-+=+| .... -.++.++++.+.+.|+..+.+++-... |-+.|+.
T Consensus 127 vvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~d---------------------Gt~~G~~----- 180 (234)
T PRK13587 127 YLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKD---------------------GKMSGPN----- 180 (234)
T ss_pred EEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCc---------------------CCCCccC-----
Confidence 0001111 1110 113588999999999999877753211 2233332
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
++.+.++++.. ++|||++|||.+.+|+.+++.+|+++|.+||+++.
T Consensus 181 ~~li~~l~~~~-------~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 181 FELTGQLVKAT-------TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 45667777654 79999999999999999999999999999999986
No 148
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.48 E-value=2.9e-05 Score=74.50 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=101.7
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.+.++++.. ..|+++|+-. .+...-..+ +..+|+|+|.+|..|=.... +.| -+..+...+.++-+.+.+ +
T Consensus 70 i~~~v~~~~-~~p~GvnvL~-nd~~aal~i---A~a~ga~FIRv~~~~g~~~~--d~G-~~~~~a~e~~r~r~~l~~--~ 139 (257)
T TIGR00259 70 IAGQLKSDV-SIPLGINVLR-NDAVAALAI---AMAVGAKFIRVNVLTGVYAS--DQG-IIEGNAGELIRYKKLLGS--E 139 (257)
T ss_pred HHHHHHHhc-CCCeeeeeec-CCCHHHHHH---HHHhCCCEEEEccEeeeEec--ccc-cccccHHHHHHHHHHcCC--C
Confidence 345666655 6799999963 233322233 33469999999976543211 111 233344445555555542 5
Q ss_pred ccEE----EEECCCC--CChHHHHHHHHHcC-CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHH
Q 014581 219 VPVW----AKMTPNI--TDITEPARVALRSG-SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGK 291 (422)
Q Consensus 219 iPv~----vKl~~~~--~~~~~~a~~l~~aG-adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~ 291 (422)
+.|+ +|-..-+ .++.+.++.+...| +|+|++++...+. +..++.
T Consensus 140 v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~-----------------------------~~d~~~ 190 (257)
T TIGR00259 140 VKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGT-----------------------------EVDLEL 190 (257)
T ss_pred cEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCC-----------------------------CCCHHH
Confidence 5554 3444322 24677888777776 9999999864321 233566
Q ss_pred HHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhh
Q 014581 292 VMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343 (422)
Q Consensus 292 v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~G 343 (422)
++++++... ++|++..|||+ ++.+.+++.. ||+|.++|.+-.+|
T Consensus 191 l~~vr~~~~------~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K~~G 234 (257)
T TIGR00259 191 LKLAKETVK------DTPVLAGSGVN-LENVEELLSI-ADGVIVATTIKKDG 234 (257)
T ss_pred HHHHHhccC------CCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcccCC
Confidence 677776543 68999999995 9999999997 99999999998666
No 149
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.48 E-value=1.2e-05 Score=73.97 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=104.4
Q ss_pred HHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEc-cCCCCCCCccccccccccChhHHHHHHHHHhhcc-C
Q 014581 141 KQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVN-FSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-T 218 (422)
Q Consensus 141 ~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN-~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~ 218 (422)
+.++. ..+.||=+|-. +++.|..++ ++|||.|||. +-|-+.. |. ....+.+-++.++.|+.. +
T Consensus 54 ~~~~~-~s~lPICVSaV---ep~~f~~aV----~AGAdliEIGNfDsFY~q-----Gr--~f~a~eVL~Lt~~tR~LLP~ 118 (242)
T PF04481_consen 54 KLAKS-LSNLPICVSAV---EPELFVAAV----KAGADLIEIGNFDSFYAQ-----GR--RFSAEEVLALTRETRSLLPD 118 (242)
T ss_pred HHHHH-hCCCCeEeecC---CHHHHHHHH----HhCCCEEEecchHHHHhc-----CC--eecHHHHHHHHHHHHHhCCC
Confidence 33443 34789988874 577765543 4799999994 4332211 11 134567777888888765 7
Q ss_pred ccEEEEECCCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC---CCcchhHHHHHH
Q 014581 219 VPVWAKMTPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC---KAVHPIALGKVM 293 (422)
Q Consensus 219 iPv~vKl~~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG---~~i~p~al~~v~ 293 (422)
+|+.|-++-.+. +-.++|..|.++|+|-|---+.+.. +| ...|..| ++ -.+|...+
T Consensus 119 ~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss---------~p--------~~~g~lglIeka--apTLAaay 179 (242)
T PF04481_consen 119 ITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSS---------KP--------TSPGILGLIEKA--APTLAAAY 179 (242)
T ss_pred CceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCC---------CC--------CCcchHHHHHHH--hHHHHHHH
Confidence 888888765432 3578999999999997743332211 11 1122222 11 12456667
Q ss_pred HHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 294 SIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 294 ~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.+.+.+ ++||+..-|+. .-.+=-++.+||++|.+|+++=+
T Consensus 180 ~ISr~v-------~iPVlcASGlS-~vT~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 180 AISRAV-------SIPVLCASGLS-AVTAPMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred HHHhcc-------CCceEeccCcc-hhhHHHHHHcCCcccchhHHhhh
Confidence 777765 89999999996 45667778999999999999854
No 150
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.47 E-value=5.3e-06 Score=77.05 Aligned_cols=94 Identities=21% Similarity=0.340 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEE
Q 014581 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSG 312 (422)
Q Consensus 233 ~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa 312 (422)
.+-++.+.+.|+|++++...+.. .+ + .++ .+..++.++++++.+ ++||++
T Consensus 105 ~e~a~~a~~~Gadyi~~g~v~~t------~~-k-----------~~~-----~~~g~~~l~~~~~~~-------~ipvia 154 (201)
T PRK07695 105 LEEAIQAEKNGADYVVYGHVFPT------DC-K-----------KGV-----PARGLEELSDIARAL-------SIPVIA 154 (201)
T ss_pred HHHHHHHHHcCCCEEEECCCCCC------CC-C-----------CCC-----CCCCHHHHHHHHHhC-------CCCEEE
Confidence 34577788999999965433221 00 0 111 122346667776654 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEhhHHHhh-hh-HHHHHHHHHHHHH
Q 014581 313 IGGVETGGDAAEFILLGANTVQVCTGVMMH-GY-GLVKRLCEELKDF 357 (422)
Q Consensus 313 ~GGI~s~~da~~~l~aGAd~V~vgtall~~-Gp-~~i~~i~~~l~~~ 357 (422)
.||| +++++.+++.+||++|.++|+++.. .| ..++++.+.+++|
T Consensus 155 ~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~~ 200 (201)
T PRK07695 155 IGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKKW 200 (201)
T ss_pred EcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence 9999 8999999999999999999999963 23 3455555555544
No 151
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.46 E-value=9.1e-06 Score=75.44 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCC-CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEE-YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~-~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
+..++.++++.+.. ..|+= +++| .+.+++ +++-.+|||=+-+|-.. -.+|+++.+.-+.
T Consensus 60 ~~~~~vv~r~A~~v-fiPlt--VGGGI~s~eD~----~~ll~aGADKVSINsaA-------------v~~p~lI~~~a~~ 119 (256)
T COG0107 60 ETMLDVVERVAEQV-FIPLT--VGGGIRSVEDA----RKLLRAGADKVSINSAA-------------VKDPELITEAADR 119 (256)
T ss_pred hhHHHHHHHHHhhc-eeeeE--ecCCcCCHHHH----HHHHHcCCCeeeeChhH-------------hcChHHHHHHHHH
Confidence 44555666665543 44543 3333 245553 34556799999999421 2466777766665
Q ss_pred Hhhcc-CccEEEEECC---------------CC--CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCC
Q 014581 213 INAKA-TVPVWAKMTP---------------NI--TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYS 274 (422)
Q Consensus 213 vr~~~-~iPv~vKl~~---------------~~--~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~ 274 (422)
.-..+ =+-|=.|-.+ .. -+..+.++++++.||--|.+.. | |-+.
T Consensus 120 FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLts-----m--D~DG----------- 181 (256)
T COG0107 120 FGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTS-----M--DRDG----------- 181 (256)
T ss_pred hCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEee-----e--cccc-----------
Confidence 43221 1111122211 11 1478999999999997776542 2 2121
Q ss_pred ccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 275 TPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 275 ~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~ 353 (422)
+..|| .++.++.++..+ ++|||++||.-++++..+++..| ||++..+|.|.++... ..+
T Consensus 182 tk~Gy--------Dl~l~~~v~~~v-------~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~-----i~e 241 (256)
T COG0107 182 TKAGY--------DLELTRAVREAV-------NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEIT-----IGE 241 (256)
T ss_pred cccCc--------CHHHHHHHHHhC-------CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCccc-----HHH
Confidence 22344 256777888877 89999999999999999999877 9999988888766322 356
Q ss_pred HHHHHHHcCCC
Q 014581 354 LKDFMKMHNFS 364 (422)
Q Consensus 354 l~~~m~~~G~~ 364 (422)
+++||.++|+.
T Consensus 242 vK~yL~~~gi~ 252 (256)
T COG0107 242 VKEYLAEQGIE 252 (256)
T ss_pred HHHHHHHcCCC
Confidence 77888999885
No 152
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=98.45 E-value=1.9e-05 Score=80.27 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=103.4
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.++.+++..++.++.+-++ -.++..+. ++.+.++|+|.+.+|...+. +.+.+.++.+++. +
T Consensus 216 iVk~Lr~~~~~~~I~~DLK-~~Di~~~v--v~~~a~aGAD~vTVH~ea~~---------------~ti~~ai~~akk~-G 276 (391)
T PRK13307 216 VISKIREVRPDAFIVADLK-TLDTGNLE--ARMAADATADAVVISGLAPI---------------STIEKAIHEAQKT-G 276 (391)
T ss_pred HHHHHHHhCCCCeEEEEec-ccChhhHH--HHHHHhcCCCEEEEeccCCH---------------HHHHHHHHHHHHc-C
Confidence 4667776656889999997 56676664 66777889999999964322 2466677777775 4
Q ss_pred ccEEE-EECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 219 VPVWA-KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 219 iPv~v-Kl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
+-+.+ -+.+ .+..+.++.+ ..++|.|.++-. +|.+ +. +.+++.|+++++
T Consensus 277 ikvgVD~lnp--~tp~e~i~~l-~~~vD~Vllht~------vdp~---------------~~------~~~~~kI~~ikk 326 (391)
T PRK13307 277 IYSILDMLNV--EDPVKLLESL-KVKPDVVELHRG------IDEE---------------GT------EHAWGNIKEIKK 326 (391)
T ss_pred CEEEEEEcCC--CCHHHHHHHh-hCCCCEEEEccc------cCCC---------------cc------cchHHHHHHHHH
Confidence 55555 4444 2455666666 778999877632 2211 10 113456667776
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.. .+++|...|||. .+++.+++.+|||.+.+||+++..
T Consensus 327 ~~------~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 327 AG------GKILVAVAGGVR-VENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred hC------CCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhCC
Confidence 52 278999999998 999999999999999999998864
No 153
>PRK14057 epimerase; Provisional
Probab=98.45 E-value=2.5e-05 Score=74.69 Aligned_cols=190 Identities=12% Similarity=0.124 Sum_probs=120.5
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEcc----CCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEE
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNF----SCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAK 224 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~----scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vK 224 (422)
..++..||. ..+...+.+.+++++++|+|.+-+++ ..||. . -.++. ++++++ +.|+=|=
T Consensus 19 ~~~IspSil-~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi----t------fGp~~----i~~i~~--~~p~DvH 81 (254)
T PRK14057 19 SYPLSVGIL-AGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF----T------VGPWA----VGQLPQ--TFIKDVH 81 (254)
T ss_pred CCceEeehh-hcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc----c------cCHHH----HHHhcc--CCCeeEE
Confidence 568999997 56777888888999999999999986 34553 1 12333 444443 3453332
Q ss_pred ECCCCCChHHHHHHHHHcCCCEEEEecCC-----------c--------------ccccccccC----CCCCCC----CC
Q 014581 225 MTPNITDITEPARVALRSGSEGVSAINTI-----------M--------------SVMGIDLKT----LRPEPC----VE 271 (422)
Q Consensus 225 l~~~~~~~~~~a~~l~~aGadgi~v~n~~-----------~--------------~~~~id~e~----~~p~~~----~~ 271 (422)
|- +.++...++.+.++|+|.|+++--. . ....+++.| .++... +.
T Consensus 82 LM--V~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VL 159 (254)
T PRK14057 82 LM--VADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQ 159 (254)
T ss_pred ee--eCCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEE
Confidence 22 2356677777888888888776210 0 001112111 011000 00
Q ss_pred CCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 272 GYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 272 ~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
-.+..-|++|....|.+++.|+++++...+. +.++.|-..|||. .+.+.++..+|||.+.+||+++.+ ++ .++..
T Consensus 160 vMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~--~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSalF~~-~d-~~~~i 234 (254)
T PRK14057 160 LLAVNPGYGSKMRSSDLHERVAQLLCLLGDK--REGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSALFRD-DR-LVENT 234 (254)
T ss_pred EEEECCCCCchhccHHHHHHHHHHHHHHHhc--CCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCC-CC-HHHHH
Confidence 1123466778888899999999988876542 1257899999996 889999999999999999998864 34 34445
Q ss_pred HHHHHHHHHcC
Q 014581 352 EELKDFMKMHN 362 (422)
Q Consensus 352 ~~l~~~m~~~G 362 (422)
+.++..+...|
T Consensus 235 ~~l~~~~~~~~ 245 (254)
T PRK14057 235 RSWRAMFKVAG 245 (254)
T ss_pred HHHHHHHhhcC
Confidence 55555544443
No 154
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.43 E-value=1.3e-05 Score=75.57 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=103.2
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCc
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~i 219 (422)
++++.+. .++-+++++|.... +.++++.++|++.+.+... --.+|+.+.++++..-+..-+
T Consensus 67 i~~i~~~---~~~~vQvGGGIRs~---~~v~~ll~~G~~rViiGt~-------------av~~p~~v~~~~~~~g~rivv 127 (241)
T COG0106 67 IKEILEA---TDVPVQVGGGIRSL---EDVEALLDAGVARVIIGTA-------------AVKNPDLVKELCEEYGDRIVV 127 (241)
T ss_pred HHHHHHh---CCCCEEeeCCcCCH---HHHHHHHHCCCCEEEEecc-------------eecCHHHHHHHHHHcCCcEEE
Confidence 4444443 35667887664222 2345566689999887631 136788888888776432111
Q ss_pred cEEEEEC-----C--CCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHH
Q 014581 220 PVWAKMT-----P--NIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALG 290 (422)
Q Consensus 220 Pv~vKl~-----~--~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~ 290 (422)
-|-+|.. . ..+ ++.++++.+.+.|+..|.+++- +.| |-++|+. .+
T Consensus 128 ~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI-------~~D--------------Gtl~G~n-----~~ 181 (241)
T COG0106 128 ALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDI-------SRD--------------GTLSGPN-----VD 181 (241)
T ss_pred EEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEec-------ccc--------------cccCCCC-----HH
Confidence 1112211 1 111 4688999999999999988753 211 3345543 46
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHh-CCCEEEEhhHHHhhhh
Q 014581 291 KVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL-GANTVQVCTGVMMHGY 344 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~a-GAd~V~vgtall~~Gp 344 (422)
.+.++.+.+ ++|||++|||.|-+|+...-.. |...|-+|++++....
T Consensus 182 l~~~l~~~~-------~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 182 LVKELAEAV-------DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred HHHHHHHHh-------CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCC
Confidence 677888876 8999999999999999999999 9999999999997643
No 155
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=98.43 E-value=2.9e-05 Score=73.29 Aligned_cols=172 Identities=12% Similarity=0.081 Sum_probs=111.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEcc----CCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEE
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNF----SCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAK 224 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~----scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vK 224 (422)
..++..||. ..+...+.+-.++++++|+|.+-+++ .+||. . -.+. +++++++ +.|+=|=
T Consensus 12 ~~~I~pSil-~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi----t------fGp~----~i~~i~~--~~~~DvH 74 (228)
T PRK08091 12 QQPISVGIL-ASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF----T------VGAI----AIKQFPT--HCFKDVH 74 (228)
T ss_pred CCeEEeehh-hcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc----c------cCHH----HHHHhCC--CCCEEEE
Confidence 458999997 56777788888999999999999986 35653 1 1223 3444443 4454443
Q ss_pred ECCCCCChHHHHHHHHHcCCCEEEEecCC------------------cccccccccC----CCCCCC----CCCCCccCC
Q 014581 225 MTPNITDITEPARVALRSGSEGVSAINTI------------------MSVMGIDLKT----LRPEPC----VEGYSTPGG 278 (422)
Q Consensus 225 l~~~~~~~~~~a~~l~~aGadgi~v~n~~------------------~~~~~id~e~----~~p~~~----~~~~~~~gG 278 (422)
|- +.++.+.++.+.++|+|.|+++--. ..+..++++| .++... +.-.+..-|
T Consensus 75 LM--v~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PG 152 (228)
T PRK08091 75 LM--VRDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPR 152 (228)
T ss_pred ec--cCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCC
Confidence 32 2356677777777777777766210 0001111111 011100 001123456
Q ss_pred CCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 279 ~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++|....|.+++.|+++++...+. +.++.|-..|||. .+.+.++..+|||.+.+||+++.+
T Consensus 153 fgGQ~f~~~~l~KI~~lr~~~~~~--~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~~ 213 (228)
T PRK08091 153 TGTKAPSDLILDRVIQVENRLGNR--RVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFSQ 213 (228)
T ss_pred CCCccccHHHHHHHHHHHHHHHhc--CCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhCC
Confidence 778877888999999998876542 1257799999996 889999999999999999998864
No 156
>PRK08005 epimerase; Validated
Probab=98.42 E-value=2.2e-05 Score=73.28 Aligned_cols=167 Identities=8% Similarity=0.024 Sum_probs=108.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccC----CCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFS----CPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP 227 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~s----cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~ 227 (422)
+..||. ..+...+.+-+++++++|+|.+-+++- .||. .+ .+ ++++++|+.+++|+=|=|-
T Consensus 3 i~pSil-~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~----tf------G~----~~i~~l~~~t~~~~DvHLM- 66 (210)
T PRK08005 3 LHPSLA-SADPLRYAEALTALHDAPLGSLHLDIEDTSFINNI----TF------GM----KTIQAVAQQTRHPLSFHLM- 66 (210)
T ss_pred EEeehh-hCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc----cc------CH----HHHHHHHhcCCCCeEEEec-
Confidence 567886 467777888888999999999999863 4552 11 22 3566666666667555442
Q ss_pred CCCChHHHHHHHHHcCCCEEEEecCC----------------cccccccccC----CCCCCC----CCCCCccCCCCCCC
Q 014581 228 NITDITEPARVALRSGSEGVSAINTI----------------MSVMGIDLKT----LRPEPC----VEGYSTPGGYSCKA 283 (422)
Q Consensus 228 ~~~~~~~~a~~l~~aGadgi~v~n~~----------------~~~~~id~e~----~~p~~~----~~~~~~~gG~sG~~ 283 (422)
+.++...++.+.++|+|.|+++--. ..+..+++.| .++... +.-.+..-|+.|..
T Consensus 67 -v~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~ 145 (210)
T PRK08005 67 -VSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQ 145 (210)
T ss_pred -cCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccce
Confidence 2356667777777777777665210 0001111111 011000 01112345677877
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
..|.+++.|+++++... ...|-..|||. .+.+.++..+|||.+.+||+++.+
T Consensus 146 f~~~~~~KI~~l~~~~~------~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~~ 197 (210)
T PRK08005 146 FIAAMCEKVSQSREHFP------AAECWADGGIT-LRAARLLAAAGAQHLVIGRALFTT 197 (210)
T ss_pred ecHHHHHHHHHHHHhcc------cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCC
Confidence 78888998988887763 34699999996 889999999999999999998854
No 157
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.42 E-value=8.3e-06 Score=75.75 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=102.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCC-CCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSC-PHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT 230 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~sc-P~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~ 230 (422)
+.+||. ..+...+.+.++.+.++|+|.|++.+-- +.... ....+ ++++.+++.++.|+.+.+-.+
T Consensus 2 ~~~~~~-~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~-------~~~~~----~~~~~i~~~~~~~~~v~l~~~-- 67 (211)
T cd00429 2 IAPSIL-SADFANLGEELKRLEEAGADWIHIDVMDGHFVPN-------LTFGP----PVVKALRKHTDLPLDVHLMVE-- 67 (211)
T ss_pred ceeeee-cCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCc-------cccCH----HHHHHHHhhCCCcEEEEeeeC--
Confidence 445664 4567788888999999999999996311 10000 00112 344555544445654433322
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCccc----------cc----ccc--cC----CCCC---CCCCCC-CccCCCCCCCcch
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSV----------MG----IDL--KT----LRPE---PCVEGY-STPGGYSCKAVHP 286 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~----------~~----id~--e~----~~p~---~~~~~~-~~~gG~sG~~i~p 286 (422)
+..+.++.+.++|+|+++++...... .+ +.+ .+ .+.. ...-.+ ....|.+|....+
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 147 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIP 147 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCH
Confidence 45667888889999999887532110 01 111 00 0000 000000 1112334444445
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
..++.+.++++...++. .++||++.|||. .+++.+++.+|||+|.+||+++..
T Consensus 148 ~~~~~i~~~~~~~~~~~--~~~pi~v~GGI~-~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 148 EVLEKIRKLRELIPENN--LNLLIEVDGGIN-LETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred HHHHHHHHHHHHHHhcC--CCeEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCC
Confidence 56677777777653211 148999999998 599999999999999999999865
No 158
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.41 E-value=1.4e-05 Score=75.72 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHhhccCCCCCc-eEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDY-SLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~i-pIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
+...+.++++++.+ ++ ||+..|||++.+++.+++.+|||.|.+||++..++...++.+.
T Consensus 169 ~~~~e~I~~v~~~~-------~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~~~~~~~~ 228 (232)
T PRK04169 169 PVPPEMVKAVKKAL-------DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPKKTVKAIK 228 (232)
T ss_pred CCCHHHHHHHHHhc-------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHHHHHHHHH
Confidence 34457778888875 56 9999999999999999999999999999999988332444433
No 159
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.37 E-value=2.9e-05 Score=73.71 Aligned_cols=154 Identities=18% Similarity=0.180 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 135 TMLKEFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 135 ~~l~~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
..++.|+++.+.. ..|+- +++|. +.++ ++++-+.|++-+.++-. .-.+++.++++.+..
T Consensus 60 ~n~~~i~~i~~~~-~~~i~--vgGGIrs~ed----~~~ll~~Ga~~Vvigt~-------------~~~~~~~l~~~~~~~ 119 (229)
T PF00977_consen 60 SNLELIKEIAKET-GIPIQ--VGGGIRSIED----AERLLDAGADRVVIGTE-------------ALEDPELLEELAERY 119 (229)
T ss_dssp HHHHHHHHHHHHS-SSEEE--EESSE-SHHH----HHHHHHTT-SEEEESHH-------------HHHCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhcC-CccEE--EeCccCcHHH----HHHHHHhCCCEEEeChH-------------HhhchhHHHHHHHHc
Confidence 3445566776654 34544 54443 3443 34455679999888731 236788888888876
Q ss_pred hhc-cCccEEEEE------CCCC----CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 214 NAK-ATVPVWAKM------TPNI----TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 214 r~~-~~iPv~vKl------~~~~----~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
-.. .-+-|=+|- ...- .++.++++.+.+.|+..+.+++- |- .|-..|+
T Consensus 120 g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi-------~~--------------dGt~~G~ 178 (229)
T PF00977_consen 120 GSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDI-------DR--------------DGTMQGP 178 (229)
T ss_dssp GGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEET-------TT--------------TTTSSS-
T ss_pred CcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeec-------cc--------------cCCcCCC
Confidence 441 111111121 1111 14789999999999999987742 21 1233443
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
. ++.++++++.. ++|||++|||.+.+|+.++...|+++|.+|++++.
T Consensus 179 d-----~~~~~~l~~~~-------~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 179 D-----LELLKQLAEAV-------NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp ------HHHHHHHHHHH-------SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred C-----HHHHHHHHHHc-------CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 2 46677788776 79999999999999999999999999999999964
No 160
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=98.36 E-value=5.7e-06 Score=76.87 Aligned_cols=171 Identities=16% Similarity=0.236 Sum_probs=104.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEcc----CCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNF----SCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP 227 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~----scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~ 227 (422)
+.+||. ..+...+.+.+++++++|+|.+-+++ .+||. . -.+ ++++++|+.+++|+=|=|-
T Consensus 2 I~pSil-~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~----~------~g~----~~i~~i~~~~~~~~DvHLM- 65 (201)
T PF00834_consen 2 ISPSIL-SADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL----T------FGP----DIIKAIRKITDLPLDVHLM- 65 (201)
T ss_dssp EEEBGG-GS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-----------B-H----HHHHHHHTTSSSEEEEEEE-
T ss_pred eehhhh-hCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc----c------CCH----HHHHHHhhcCCCcEEEEee-
Confidence 567786 45566777888899999999999986 35553 1 122 3566677777778766553
Q ss_pred CCCChHHHHHHHHHcCCCEEEEecCC----------------ccccccccc----CCCCCCC----CCCCCccCCCCCCC
Q 014581 228 NITDITEPARVALRSGSEGVSAINTI----------------MSVMGIDLK----TLRPEPC----VEGYSTPGGYSCKA 283 (422)
Q Consensus 228 ~~~~~~~~a~~l~~aGadgi~v~n~~----------------~~~~~id~e----~~~p~~~----~~~~~~~gG~sG~~ 283 (422)
+.++....+.+.++|++.|+++--. .....++++ ..++... +.-.+..-|.+|..
T Consensus 66 -v~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~ 144 (201)
T PF00834_consen 66 -VENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQK 144 (201)
T ss_dssp -SSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-
T ss_pred -eccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCccc
Confidence 2345556666666676666655210 000111111 1122111 01112335678888
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
..|.+++.|+++++...+.- .++.|...|||+ .+.+.++..+|||.+.+||+++.+
T Consensus 145 f~~~~~~KI~~l~~~~~~~~--~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENG--LDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHT--CGSEEEEESSES-TTTHHHHHHHT--EEEESHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHhcC--CceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCC
Confidence 88889999999888765321 379999999996 678999999999999999998754
No 161
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.34 E-value=2e-05 Score=73.96 Aligned_cols=159 Identities=20% Similarity=0.210 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC--------------
Q 014581 165 WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT-------------- 230 (422)
Q Consensus 165 ~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~-------------- 230 (422)
..+.++++.+.|.|+|-+.- +.+-+.+.+.++++++|+.. +|+++-- .+..
T Consensus 16 ~~~~~~~~~~~gtdai~vGG-------------S~~vt~~~~~~~v~~ik~~~-lPvilfp-~~~~~i~~~aDa~l~~sv 80 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGG-------------SQGVTYEKTDTLIEALRRYG-LPIILFP-SNPTNVSRDADALFFPSV 80 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcC-------------CCcccHHHHHHHHHHHhccC-CCEEEeC-CCccccCcCCCEEEEEEe
Confidence 34577788888999998752 23345578889999999864 9998742 2211
Q ss_pred ----Ch-------HHHHHHHHHcCC----CEEEEecCCcccccccccCCCCCCC--------------CCCC----CccC
Q 014581 231 ----DI-------TEPARVALRSGS----EGVSAINTIMSVMGIDLKTLRPEPC--------------VEGY----STPG 277 (422)
Q Consensus 231 ----~~-------~~~a~~l~~aGa----dgi~v~n~~~~~~~id~e~~~p~~~--------------~~~~----~~~g 277 (422)
+. .+.++.+.+.+. .|-.+.|..... + .+-..++.|- ..++ -.+|
T Consensus 81 lNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v-~-~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~g 158 (223)
T TIGR01768 81 LNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAA-A-RVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAG 158 (223)
T ss_pred ecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcce-e-ecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEec
Confidence 11 223333433332 122344432110 0 0000111100 0011 1223
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHH
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRL 350 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i 350 (422)
|-.|. |...+.++.+++.+. ++||+..|||++.+++.+++.+|||.|.+||.+..+ |..+.+.
T Consensus 159 s~~g~---~v~~e~i~~v~~~~~------~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d-p~~~~~~ 221 (223)
T TIGR01768 159 SGAPE---PVPPELVAEVKKVLD------KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED-VDKALET 221 (223)
T ss_pred CCCCC---CcCHHHHHHHHHHcC------CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC-HHHHHHh
Confidence 32333 444567778887653 699999999999999999999999999999999988 7766554
No 162
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.33 E-value=4.5e-05 Score=73.08 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=100.0
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
...++++.. +.|+++|+-. .+..+-..+ +..+|+|+|-+|..|-...... | .+..+...+.+.-+.+.. +
T Consensus 71 i~~~v~~~~-~~p~GVnvL~-nd~~aalai---A~A~ga~FIRv~~~~g~~~~d~--G-~~~~~a~e~~r~R~~l~a--~ 140 (254)
T PF03437_consen 71 IAREVRREV-SVPVGVNVLR-NDPKAALAI---AAATGADFIRVNVFVGAYVTDE--G-IIEGCAGELLRYRKRLGA--D 140 (254)
T ss_pred HHHHHHHhC-CCCEEeeeec-CCCHHHHHH---HHHhCCCEEEecCEEceecccC--c-cccccHHHHHHHHHHcCC--C
Confidence 445666666 7899999963 233332223 3346999999997664432211 1 223333333333333322 3
Q ss_pred ccEEEEE----CCCCC--ChHHHHHHH-HHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHH
Q 014581 219 VPVWAKM----TPNIT--DITEPARVA-LRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGK 291 (422)
Q Consensus 219 iPv~vKl----~~~~~--~~~~~a~~l-~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~ 291 (422)
+.|+.-+ +..+. ++.+.++.+ ...++|+|++++...+ .|..++.
T Consensus 141 v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG-----------------------------~~~~~~~ 191 (254)
T PF03437_consen 141 VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATG-----------------------------EPPDPEK 191 (254)
T ss_pred eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccC-----------------------------CCCCHHH
Confidence 5555433 22222 356666665 6788999999975322 1334567
Q ss_pred HHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhh
Q 014581 292 VMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY 344 (422)
Q Consensus 292 v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp 344 (422)
+.++++.+ ++||+..+|++ ++.+.+++.. ||++-|||.|-.+|.
T Consensus 192 l~~vr~~~-------~~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 192 LKRVREAV-------PVPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKKDGK 235 (254)
T ss_pred HHHHHhcC-------CCCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeeeCCE
Confidence 78888876 69999999995 9999999975 999999999887654
No 163
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.32 E-value=5.3e-06 Score=83.87 Aligned_cols=102 Identities=22% Similarity=0.186 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 202 DCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 202 ~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
+++.+.++++++++. .+++.+|+++ .+..++++.+.++|+|.|+++.|+... .+++-.+
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~--~~~~e~a~~l~eaGvd~I~vhgrt~~~------------------~h~~~~~ 174 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSP--QRAQELAPTVVEAGVDLFVIQGTVVSA------------------EHVSKEG 174 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCC--cCHHHHHHHHHHCCCCEEEEeccchhh------------------hccCCcC
Confidence 578889999999886 5666666643 356889999999999999999876421 0111111
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhH
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgta 338 (422)
.+ ..+.++.+.. ++|||+ |+|.|.+++.+++.+|||+|++|.+
T Consensus 175 ---~~---~~i~~~ik~~-------~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 175 ---EP---LNLKEFIYEL-------DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred ---CH---HHHHHHHHHC-------CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 11 2233344433 799999 8999999999999999999999854
No 164
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.32 E-value=2.4e-05 Score=73.06 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=99.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCC
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNI 229 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~ 229 (422)
.++++=+. ..+.++..++++.+.+.|+..+|+-+..|+. .+.++.+++....++.|-. .++
T Consensus 10 ~~~~~v~r-~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~-----------------~~~i~~l~~~~~~~~~iGa-GTV 70 (206)
T PRK09140 10 LPLIAILR-GITPDEALAHVGALIEAGFRAIEIPLNSPDP-----------------FDSIAALVKALGDRALIGA-GTV 70 (206)
T ss_pred CCEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEeCCCccH-----------------HHHHHHHHHHcCCCcEEeE-Eec
Confidence 45666665 5688999999999999999999997654432 2244555544443444322 223
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCC-CCCCc-------cCC--CCC-CCcchhHHHHHHHHHHH
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCV-EGYST-------PGG--YSC-KAVHPIALGKVMSIAKM 298 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~-~~~~~-------~gG--~sG-~~i~p~al~~v~~i~~~ 298 (422)
.+ .+-++.+.++|+++++.-+..... ++.-.....+.. ...+. ..| |-+ -+-.+..++.++.+++.
T Consensus 71 ~~-~~~~~~a~~aGA~fivsp~~~~~v--~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~ 147 (206)
T PRK09140 71 LS-PEQVDRLADAGGRLIVTPNTDPEV--IRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAV 147 (206)
T ss_pred CC-HHHHHHHHHcCCCEEECCCCCHHH--HHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhh
Confidence 33 456788999999999765432110 000000000000 00000 000 000 00013345677777776
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++. ++|+++.||| +.+++.+++++||++|.++|+++..
T Consensus 148 ~~~-----~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 148 LPP-----DVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred cCC-----CCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 521 5999999999 7999999999999999999999863
No 165
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.32 E-value=4.9e-06 Score=78.84 Aligned_cols=91 Identities=24% Similarity=0.316 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+.+.+.|+|.+.++..... ..+ .+..+..++++++.+ ++|
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~--------------------~~~------~~~~~~~i~~i~~~~-------~~p 75 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGA--------------------KGG------EPVNLELIEEIVKAV-------GIP 75 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcc--------------------ccC------CCCCHHHHHHHHHhc-------CCC
Confidence 47889999999999999998854211 000 012256777787765 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|++.|||.+.+|+.+++.+|||.|.++|..+.+ |++++++.+.+
T Consensus 76 v~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~d-p~~~~~i~~~~ 119 (234)
T cd04732 76 VQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKN-PELVKELLKEY 119 (234)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEEECchHHhC-hHHHHHHHHHc
Confidence 999999999999999999999999999999988 88887776653
No 166
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.29 E-value=2.3e-05 Score=72.79 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=99.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTP 227 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~ 227 (422)
+.++++=+. +.++++..++++.+.+.|++.+|+-+..|+. .+.++.+++.. ++.|.+ .
T Consensus 7 ~~~liaVlr-~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a-----------------~~~i~~l~~~~~~~~vGA---G 65 (204)
T TIGR01182 7 EAKIVPVIR-IDDVDDALPLAKALIEGGLRVLEVTLRTPVA-----------------LDAIRLLRKEVPDALIGA---G 65 (204)
T ss_pred hCCEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEeCCCccH-----------------HHHHHHHHHHCCCCEEEE---E
Confidence 346666665 5688999999999999999999999866652 23455555433 333443 3
Q ss_pred CCCChHHHHHHHHHcCCCEEEEecCCcccccccc--cCCCC-CCCCCCCC-----ccCCCCCCCcchhH----HHHHHHH
Q 014581 228 NITDITEPARVALRSGSEGVSAINTIMSVMGIDL--KTLRP-EPCVEGYS-----TPGGYSCKAVHPIA----LGKVMSI 295 (422)
Q Consensus 228 ~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~--e~~~p-~~~~~~~~-----~~gG~sG~~i~p~a----l~~v~~i 295 (422)
++.+ .+-++.+.++|+++++--+.... -++. +..-| .|+....+ ...|..--.++|-. ..+++.+
T Consensus 66 TVl~-~~~a~~a~~aGA~FivsP~~~~~--v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal 142 (204)
T TIGR01182 66 TVLN-PEQLRQAVDAGAQFIVSPGLTPE--LAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGVKMLKAL 142 (204)
T ss_pred eCCC-HHHHHHHHHcCCCEEECCCCCHH--HHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHH
Confidence 3444 45688889999998853332211 0110 00001 11100000 00111111233322 2556666
Q ss_pred HHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 296 AKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 296 ~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+.-++ +++++.+|||. .+++.+++.+||.+|.+||.++..
T Consensus 143 ~~plp------~i~~~ptGGV~-~~N~~~~l~aGa~~vg~Gs~L~~~ 182 (204)
T TIGR01182 143 AGPFP------QVRFCPTGGIN-LANVRDYLAAPNVACGGGSWLVPK 182 (204)
T ss_pred hccCC------CCcEEecCCCC-HHHHHHHHhCCCEEEEEChhhcCc
Confidence 66553 89999999996 699999999999999999999853
No 167
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.28 E-value=4.3e-05 Score=71.46 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=81.2
Q ss_pred HHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEE-CCCCCC--hHHHHHHHHHcCC
Q 014581 169 IDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKM-TPNITD--ITEPARVALRSGS 244 (422)
Q Consensus 169 a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl-~~~~~~--~~~~a~~l~~aGa 244 (422)
++.+.+.|||.|++-+.-. .-...+.+.+.+-++++++.+ ++|+-|=+ ++.+++ +...++.+.++|+
T Consensus 76 ~~~Av~~GAdEiDvv~n~g---------~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGA 146 (211)
T TIGR00126 76 TKEAIKYGADEVDMVINIG---------ALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGA 146 (211)
T ss_pred HHHHHHcCCCEEEeecchH---------hhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 3455567999999865321 112234566666677777665 45544412 222332 5667788899999
Q ss_pred CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHH
Q 014581 245 EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAE 324 (422)
Q Consensus 245 dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~ 324 (422)
|+|..+..+.. +| .+..-++.+++.+++ +++|-++|||++.+|+.+
T Consensus 147 DfvKTsTGf~~---------------------~g--------at~~dv~~m~~~v~~-----~v~IKaaGGirt~~~a~~ 192 (211)
T TIGR00126 147 DFVKTSTGFGA---------------------GG--------ATVEDVRLMRNTVGD-----TIGVKASGGVRTAEDAIA 192 (211)
T ss_pred CEEEeCCCCCC---------------------CC--------CCHHHHHHHHHHhcc-----CCeEEEeCCCCCHHHHHH
Confidence 99964432210 11 123455566776653 799999999999999999
Q ss_pred HHHhCCCEEEEhh
Q 014581 325 FILLGANTVQVCT 337 (422)
Q Consensus 325 ~l~aGAd~V~vgt 337 (422)
++.+||+-+...+
T Consensus 193 ~i~aGa~riGts~ 205 (211)
T TIGR00126 193 MIEAGASRIGASA 205 (211)
T ss_pred HHHHhhHHhCcch
Confidence 9999998766544
No 168
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=98.26 E-value=0.0003 Score=68.79 Aligned_cols=206 Identities=14% Similarity=0.132 Sum_probs=126.0
Q ss_pred ceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHH
Q 014581 60 FVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKE 139 (422)
Q Consensus 60 i~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~ 139 (422)
.++..|.+ ++-..+.+.++||-++-+.+... ..+.|++..+++ +.+++++.
T Consensus 14 ~l~~p~~~--Da~SAri~e~aGf~Ai~~sg~~~------------------------a~~lG~pD~g~l---t~~e~~~~ 64 (285)
T TIGR02317 14 ILQIPGAI--NAMAALLAERAGFEAIYLSGAAV------------------------AASLGLPDLGIT---TLDEVAED 64 (285)
T ss_pred cEEeCCCC--CHHHHHHHHHcCCCEEEEcHHHH------------------------HHhCCCCCCCCC---CHHHHHHH
Confidence 34444453 46666777789999888766543 123455555543 37888888
Q ss_pred HHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccC-----CCCCCCccccccccccChhHHHHHHHHH
Q 014581 140 FKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFS-----CPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~s-----cP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
++++.+.. +.||++-+-.|+ ++....+.+++++++|+.+|.|.=. |-|.. |..+. +.+...+-++++
T Consensus 65 ~~~I~~~~-~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~-----g~~lv-~~ee~~~kI~Aa 137 (285)
T TIGR02317 65 ARRITRVT-DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLP-----GKELV-SREEMVDKIAAA 137 (285)
T ss_pred HHHHHhcc-CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCC-----Ccccc-CHHHHHHHHHHH
Confidence 88887765 899999886554 4777788999999999999988421 22221 11121 233333334444
Q ss_pred hhcc-CccEE--EEECCC----CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 214 NAKA-TVPVW--AKMTPN----ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 214 r~~~-~iPv~--vKl~~~----~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
+++. +.+++ .+.-.. +++..+=+++..++|||.|.+.+.
T Consensus 138 ~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~---------------------------------- 183 (285)
T TIGR02317 138 VDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL---------------------------------- 183 (285)
T ss_pred HHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC----------------------------------
Confidence 4432 33344 443221 223444567788999999976431
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEE---EecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLS---GIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipII---a~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.+.+.++++.+.+ +.|+. ..+|-.-.-++.++-.+|.+.|..+..++..
T Consensus 184 ~~~e~i~~~~~~i-------~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 184 TSLEEFRQFAKAV-------KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred CCHHHHHHHHHhc-------CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 1134566677766 45663 3344322235677778899999999988865
No 169
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.26 E-value=2.4e-05 Score=72.10 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
.+.++.+++.++ ++|+++.||| +++++.+++.+||++|.+++.++
T Consensus 131 ~~~~~~l~~~~~------~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 131 PAYIKALKGPFP------QVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHHhhCC------CCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 355666665542 6999999999 89999999999999999999987
No 170
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.24 E-value=7.5e-05 Score=71.06 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=95.0
Q ss_pred HHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc
Q 014581 139 EFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
.|+++.+.. ..|+- +++|. +.++ ++.+-++|++-+.+|... ..+ +.++++++...+.
T Consensus 69 ~i~~i~~~~-~~~v~--vgGGir~~ed----v~~~l~~Ga~~viigt~~-------------~~~-~~~~~~~~~~~~~- 126 (233)
T cd04723 69 AIRELAAAW-PLGLW--VDGGIRSLEN----AQEWLKRGASRVIVGTET-------------LPS-DDDEDRLAALGEQ- 126 (233)
T ss_pred HHHHHHHhC-CCCEE--EecCcCCHHH----HHHHHHcCCCeEEEccee-------------ccc-hHHHHHHHhcCCC-
Confidence 345554433 45544 44333 3344 344446799999887432 234 6777777766331
Q ss_pred CccEE--EEEC-----CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHH
Q 014581 218 TVPVW--AKMT-----PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALG 290 (422)
Q Consensus 218 ~iPv~--vKl~-----~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~ 290 (422)
++-+. +|-. ....++.++++.+.+. ++.+.+++-... |...|+ .++
T Consensus 127 ~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~---------------------G~~~g~-----~~~ 179 (233)
T cd04723 127 RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRV---------------------GSGQGP-----DLE 179 (233)
T ss_pred CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCcc---------------------ccCCCc-----CHH
Confidence 11111 1111 1223578899999999 999987753211 112232 246
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 291 KVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.++++.+.. ++||+++|||.|.+|+.+++.+||+.|.+||+++..
T Consensus 180 ~~~~i~~~~-------~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 180 LLERLAARA-------DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHHhc-------CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 677777764 799999999999999999999999999999999876
No 171
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.21 E-value=1.8e-05 Score=76.03 Aligned_cols=159 Identities=22% Similarity=0.252 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcC
Q 014581 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSG 243 (422)
Q Consensus 164 ~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG 243 (422)
+..++++..++.||++|-+..-- +.+++++ +.++.+++.+++|+..| -++-+..++ ..+..+|
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe~------~~F~Gs~--------~dL~~v~~~~~~PvL~K--DFIid~~QI-~eA~~~G 131 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTEP------KFFGGSL--------EDLRAVRKAVDLPVLRK--DFIIDPYQI-YEARAAG 131 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE--S------CCCHHHH--------HHHHHHHHHSSS-EEEE--S---SHHHH-HHHHHTT
T ss_pred CHHHHHHHHHhcCCCEEEEECCC------CCCCCCH--------HHHHHHHHHhCCCcccc--cCCCCHHHH-HHHHHcC
Confidence 45678888999999999887421 1233322 34556666679999998 333344443 3456788
Q ss_pred CCEEEEecCCccc------------ccccc--c--CCCCCC-CC-CCCCccCCCCCCCc--chhHHHHHHHHHHHhhccC
Q 014581 244 SEGVSAINTIMSV------------MGIDL--K--TLRPEP-CV-EGYSTPGGYSCKAV--HPIALGKVMSIAKMMKSEF 303 (422)
Q Consensus 244 adgi~v~n~~~~~------------~~id~--e--~~~p~~-~~-~~~~~~gG~sG~~i--~p~al~~v~~i~~~~~~~~ 303 (422)
||+|.++-...+. .+++. | +.+..- .. .+. ..=|+....+ ....+....+++..+++
T Consensus 132 ADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a-~iiGINnRdL~tf~vd~~~~~~l~~~ip~-- 208 (254)
T PF00218_consen 132 ADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGA-DIIGINNRDLKTFEVDLNRTEELAPLIPK-- 208 (254)
T ss_dssp -SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT--SEEEEESBCTTTCCBHTHHHHHHHCHSHT--
T ss_pred CCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCC-CEEEEeCccccCcccChHHHHHHHhhCcc--
Confidence 8888776543221 00000 0 000000 00 000 0001111111 12233445566766664
Q ss_pred CCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHH
Q 014581 304 NDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346 (422)
Q Consensus 304 ~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~ 346 (422)
++.+|+-+||.+++|+.++..+|+|+|.||+++|.. ++.
T Consensus 209 ---~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~-~d~ 247 (254)
T PF00218_consen 209 ---DVIVISESGIKTPEDARRLARAGADAVLVGEALMRS-PDP 247 (254)
T ss_dssp ---TSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS-SSH
T ss_pred ---ceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC-CCH
Confidence 688999999999999999999999999999999987 443
No 172
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.21 E-value=1.9e-05 Score=73.22 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=56.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT 230 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~ 230 (422)
=||.-+. +++ -|+.++++|+-++-.==.-|.. .....|-+=+.||..+++|..+| ++||+.|.+..
T Consensus 22 GVIMDV~---n~E----QA~IAE~aGAvAVMaLervPaD-iR~aGGVaRMaDp~~i~eim~aV----sIPVMAKvRIG-- 87 (296)
T COG0214 22 GVIMDVV---NAE----QARIAEEAGAVAVMALERVPAD-IRAAGGVARMADPKMIEEIMDAV----SIPVMAKVRIG-- 87 (296)
T ss_pred CeEEEec---CHH----HHHHHHhcCceeEeehhhCcHH-HHhccCccccCCHHHHHHHHHhc----ccceeeeeecc--
Confidence 4666664 343 3677788887665322123432 11234556678999988888876 99999998854
Q ss_pred ChHHHHHHHHHcCCCEEEEe
Q 014581 231 DITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~ 250 (422)
++.+ |+.|++.|+|.|.=+
T Consensus 88 H~~E-A~iLealgVD~IDES 106 (296)
T COG0214 88 HFVE-AQILEALGVDMIDES 106 (296)
T ss_pred hhHH-HHHHHHhCCCccccc
Confidence 4443 788999999998533
No 173
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.20 E-value=1.4e-05 Score=74.28 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.|++++|+...+.|||-++..+-+... . | +...+++|++.++.+ .||
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~--------------------~---g---r~~~~~vv~r~A~~v-------fiP 76 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASS--------------------E---G---RETMLDVVERVAEQV-------FIP 76 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEeccccc--------------------c---c---chhHHHHHHHHHhhc-------eee
Confidence 478999999999999999766533210 1 1 234578888888877 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
+-..|||.+.+|+.+.|.+|||=|.+-|+.+.+ |.+++++.+..
T Consensus 77 ltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~-p~lI~~~a~~F 120 (256)
T COG0107 77 LTVGGGIRSVEDARKLLRAGADKVSINSAAVKD-PELITEAADRF 120 (256)
T ss_pred eEecCCcCCHHHHHHHHHcCCCeeeeChhHhcC-hHHHHHHHHHh
Confidence 999999999999999999999999999999999 99988876543
No 174
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=98.18 E-value=0.00045 Score=66.16 Aligned_cols=212 Identities=16% Similarity=0.148 Sum_probs=129.7
Q ss_pred CCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
.||++.... ++-..+.+.++||-++-+.+... ..+.|++..+.++ .++++
T Consensus 9 ~~i~~~~~~---D~~sA~~~e~~G~~ai~~s~~~~------------------------~~s~G~pD~~~~~---~~e~~ 58 (243)
T cd00377 9 GPLVLPGAW---DALSARLAERAGFKAIYTSGAGV------------------------AASLGLPDGGLLT---LDEVL 58 (243)
T ss_pred CcEEecCCC---CHHHHHHHHHcCCCEEEeccHHH------------------------HHhcCCCCCCcCC---HHHHH
Confidence 355544433 46667777788998888766432 1223555555433 78888
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 138 KEFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
..++.+.+.. +.|+++-+-.|+ +.+...+.++++.++|+++|-|.=....... ...|....-+++...+.++++++.
T Consensus 59 ~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~-g~~~~~~~~~~ee~~~ki~aa~~a 136 (243)
T cd00377 59 AAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKC-GHHGGKVLVPIEEFVAKIKAARDA 136 (243)
T ss_pred HHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccc-cCCCCCeecCHHHHHHHHHHHHHH
Confidence 8888877654 789998775443 5677888899999999999998422111100 001111122444455555555543
Q ss_pred ----cCccEEEE-----EC-CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 217 ----ATVPVWAK-----MT-PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 217 ----~~iPv~vK-----l~-~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
.+.+|++. .. ..+++..+-+++..++|||++.+....
T Consensus 137 ~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------------------------------- 183 (243)
T cd00377 137 RDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK--------------------------------- 183 (243)
T ss_pred HhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC---------------------------------
Confidence 25778877 32 234456777888999999999765321
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCC-HHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVET-GGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s-~~da~~~l~aGAd~V~vgtall~~ 342 (422)
..+.++++.+.. +.||+..-.-.. .-...++-.+|.+.|.++..++..
T Consensus 184 -~~~~~~~~~~~~-------~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~~~~ 232 (243)
T cd00377 184 -DPEEIRAFAEAP-------DVPLNVNMTPGGNLLTVAELAELGVRRVSYGLALLRA 232 (243)
T ss_pred -CHHHHHHHHhcC-------CCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHHHHH
Confidence 124555666654 567766521111 134556667899999999877754
No 175
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.18 E-value=0.00022 Score=74.02 Aligned_cols=150 Identities=18% Similarity=0.204 Sum_probs=92.9
Q ss_pred HHHHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhh
Q 014581 137 LKEFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINA 215 (422)
Q Consensus 137 l~~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~ 215 (422)
.+.++.+++.++. +.+++-..-. .+.. .++.+.++|+|++-+... . +...+.++++.+++
T Consensus 45 ~~~i~~l~~~~~~-~~ii~D~kl~d~g~~---~v~~a~~aGAdgV~v~g~--~-------------~~~~~~~~i~~a~~ 105 (430)
T PRK07028 45 MNAIRTLRKNFPD-HTIVADMKTMDTGAI---EVEMAAKAGADIVCILGL--A-------------DDSTIEDAVRAARK 105 (430)
T ss_pred HHHHHHHHHHCCC-CEEEEEeeeccchHH---HHHHHHHcCCCEEEEecC--C-------------ChHHHHHHHHHHHH
Confidence 3456666665533 4443321111 1322 445566789999876521 1 11124556666666
Q ss_pred ccCccEEEE-ECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHH
Q 014581 216 KATVPVWAK-MTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMS 294 (422)
Q Consensus 216 ~~~iPv~vK-l~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~ 294 (422)
. ..++++- +++. +..+.++.+.+.|+|.|.+.-.+ +-+. .+ +..++.+++
T Consensus 106 ~-G~~~~~g~~s~~--t~~e~~~~a~~~GaD~I~~~pg~------~~~~-------------~~-------~~~~~~l~~ 156 (430)
T PRK07028 106 Y-GVRLMADLINVP--DPVKRAVELEELGVDYINVHVGI------DQQM-------------LG-------KDPLELLKE 156 (430)
T ss_pred c-CCEEEEEecCCC--CHHHHHHHHHhcCCCEEEEEecc------chhh-------------cC-------CChHHHHHH
Confidence 4 6677663 4543 33456778889999999654211 1000 00 122456667
Q ss_pred HHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 295 IAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 295 i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+++.+ ++||++.||| +.+.+.+++.+||+.|.+||+++..
T Consensus 157 l~~~~-------~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 157 VSEEV-------SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred HHhhC-------CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC
Confidence 76654 6999999999 6899999999999999999999875
No 176
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=98.18 E-value=0.00062 Score=66.74 Aligned_cols=213 Identities=12% Similarity=0.083 Sum_probs=127.0
Q ss_pred ceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHH
Q 014581 60 FVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKE 139 (422)
Q Consensus 60 i~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~ 139 (422)
.++..|.+ ++-..+-+.++||-++-+-+.... ..+.|++..++++ .+++++.
T Consensus 18 ~l~~p~~~--Da~SAri~e~~Gf~ai~~Sg~~~a-----------------------~~~lG~PD~g~l~---~~e~~~~ 69 (292)
T PRK11320 18 PLQIVGTI--NAYHALLAERAGFKAIYLSGGGVA-----------------------AASLGLPDLGITT---LDDVLID 69 (292)
T ss_pred cEEecCCC--CHHHHHHHHHcCCCEEEeCHHHHH-----------------------hHhcCCCCCCCCC---HHHHHHH
Confidence 33444443 466567777889988866554321 0234556555443 8888888
Q ss_pred HHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEc-cC----CCCCCCccccccccccChhHHHHHHHHH
Q 014581 140 FKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVN-FS----CPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN-~s----cP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
++++.+.. +.||++-+-.|+ ++....+.+++++++|+.+|.|- -. |-|.. |..+. ..+...+-+++.
T Consensus 70 ~~~I~~~~-~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~-----~~~lv-~~ee~~~kI~Aa 142 (292)
T PRK11320 70 VRRITDAC-DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRP-----NKEIV-SQEEMVDRIKAA 142 (292)
T ss_pred HHHHHhcc-CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCC-----CCccc-CHHHHHHHHHHH
Confidence 88887755 789999886554 67788899999999999999883 11 22211 11121 233333333334
Q ss_pred hhcc-CccE--EEEECCC----CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 214 NAKA-TVPV--WAKMTPN----ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 214 r~~~-~iPv--~vKl~~~----~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
+++. +.++ +++.-.. +++..+=+++..++|||+|.+.+.
T Consensus 143 ~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~---------------------------------- 188 (292)
T PRK11320 143 VDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM---------------------------------- 188 (292)
T ss_pred HHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC----------------------------------
Confidence 3332 3344 3443221 223444567788999999976531
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEE---EecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHH
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLS---GIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVK 348 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipII---a~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~ 348 (422)
..++.++++.+.+ +.|+. ..+|-.-.-++.++-.+|...|..+..++..-...+.
T Consensus 189 ~~~~~i~~~~~~~-------~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa~~a~~ 246 (292)
T PRK11320 189 TELEMYRRFADAV-------KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRAMNKAAE 246 (292)
T ss_pred CCHHHHHHHHHhc-------CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHHHHHHHH
Confidence 1135566677765 46663 2344322234566667899999999988765333333
No 177
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.16 E-value=0.00011 Score=70.23 Aligned_cols=151 Identities=10% Similarity=0.015 Sum_probs=95.7
Q ss_pred HHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc
Q 014581 139 EFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
.|+++.+.. ++-+++++|. +.++ ++.+-+.|+|-+.+|-. .-.+|+.+.++.+...+.+
T Consensus 65 ~i~~i~~~~---~~~v~vgGGIrs~e~----~~~~l~~Ga~~vvigT~-------------a~~~p~~~~~~~~~~g~~i 124 (243)
T TIGR01919 65 MLEEVVKLL---VVVEELSGGRRDDSS----LRAALTGGRARVNGGTA-------------ALENPWWAAAVIRYGGDIV 124 (243)
T ss_pred HHHHHHHHC---CCCEEEcCCCCCHHH----HHHHHHcCCCEEEECch-------------hhCCHHHHHHHHHHccccE
Confidence 345555433 3445665553 4444 34444579999988732 1246777877776553221
Q ss_pred CccEEEEE-------C-----CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc
Q 014581 218 TVPVWAKM-------T-----PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285 (422)
Q Consensus 218 ~iPv~vKl-------~-----~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~ 285 (422)
-+-+=+|. . ..-.+..++++.+.+.|+..|.+++- |-+ |-.+|+.
T Consensus 125 vvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI-------~~d--------------Gt~~G~d-- 181 (243)
T TIGR01919 125 AVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDS-------KKD--------------GLSGGPN-- 181 (243)
T ss_pred EEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEec-------CCc--------------ccCCCcC--
Confidence 11111221 0 01124678999999999999987752 211 2234432
Q ss_pred hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHH---HhCCCEEEEhhHHHhh
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFI---LLGANTVQVCTGVMMH 342 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l---~aGAd~V~vgtall~~ 342 (422)
++.++++++.. ++|||++|||.|.+|+.+.- ..|+++|.+|++++..
T Consensus 182 ---~~l~~~l~~~~-------~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 182 ---ELLLEVVAART-------DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred ---HHHHHHHHhhC-------CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcC
Confidence 45667777764 79999999999999999874 4599999999999865
No 178
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=98.15 E-value=0.00029 Score=65.26 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=112.8
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc
Q 014581 138 KEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
+.++.+|+.+|++++++-+. ..+... -.++++-++|||.+.+-...| ...+.+.++.-++.
T Consensus 45 ~aV~~lr~~~pd~~IvAD~K-t~D~G~--~e~~ma~~aGAd~~tV~g~A~---------------~~TI~~~i~~A~~~- 105 (217)
T COG0269 45 RAVRALRELFPDKIIVADLK-TADAGA--IEARMAFEAGADWVTVLGAAD---------------DATIKKAIKVAKEY- 105 (217)
T ss_pred HHHHHHHHHCCCCeEEeeee-ecchhH--HHHHHHHHcCCCEEEEEecCC---------------HHHHHHHHHHHHHc-
Confidence 45778888899999999885 333333 246777789999998653222 23344555544443
Q ss_pred CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 218 TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 218 ~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
++-+.+-+-.+ .++...++.+.+.|+|.+.+|- ++|.+. .|.+ .++..+.++++
T Consensus 106 ~~~v~iDl~~~-~~~~~~~~~l~~~gvd~~~~H~------g~D~q~-------------~G~~------~~~~~l~~ik~ 159 (217)
T COG0269 106 GKEVQIDLIGV-WDPEQRAKWLKELGVDQVILHR------GRDAQA-------------AGKS------WGEDDLEKIKK 159 (217)
T ss_pred CCeEEEEeecC-CCHHHHHHHHHHhCCCEEEEEe------cccHhh-------------cCCC------ccHHHHHHHHH
Confidence 67777777553 4677888888889999998883 345442 1111 12344556666
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh-hh-HHHHHHHHHH
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH-GY-GLVKRLCEEL 354 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~-Gp-~~i~~i~~~l 354 (422)
.... .+.|...|||. ++++..+...|++.|-+|+++-.. +| ...+++.+.+
T Consensus 160 ~~~~-----g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i 212 (217)
T COG0269 160 LSDL-----GAKVAVAGGIT-PEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEI 212 (217)
T ss_pred hhcc-----CceEEEecCCC-HHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHH
Confidence 5521 47899999995 999999999999999999999864 23 3455555555
No 179
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.15 E-value=0.00022 Score=66.31 Aligned_cols=80 Identities=26% Similarity=0.329 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEe
Q 014581 234 EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI 313 (422)
Q Consensus 234 ~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~ 313 (422)
+-+..+.+.|+|.|.+..-+.+. + + .+.. .+..++.++++++.++ ++||++.
T Consensus 115 ~e~~~a~~~gaD~v~~~~~~~~~------~-~-----------~~~~----~~~g~~~~~~~~~~~~------~~~v~a~ 166 (212)
T PRK00043 115 EEAAAALAAGADYVGVGPIFPTP------T-K-----------KDAK----APQGLEGLREIRAAVG------DIPIVAI 166 (212)
T ss_pred HHHHHHhHcCCCEEEECCccCCC------C-C-----------CCCC----CCCCHHHHHHHHHhcC------CCCEEEE
Confidence 34667778999999765322210 0 0 1110 0122567778877652 4999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 314 GGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 314 GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
||| +.+++.+++.+||++|.++|+++..
T Consensus 167 GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 167 GGI-TPENAPEVLEAGADGVAVVSAITGA 194 (212)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEeHHhhcC
Confidence 999 6999999999999999999998865
No 180
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.14 E-value=0.00016 Score=67.30 Aligned_cols=123 Identities=19% Similarity=0.273 Sum_probs=76.8
Q ss_pred HHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEEC-CCCC--ChHHHHHHHHHcCC
Q 014581 169 IDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMT-PNIT--DITEPARVALRSGS 244 (422)
Q Consensus 169 a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~-~~~~--~~~~~a~~l~~aGa 244 (422)
++.+.+.|||.|++.+.. |.-...+.+.+.+-+.++++.+ ++|+-+=+. +.++ .+...++.+.++|+
T Consensus 75 ve~A~~~GAdevdvv~~~---------g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~Ga 145 (203)
T cd00959 75 AREAIADGADEIDMVINI---------GALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGA 145 (203)
T ss_pred HHHHHHcCCCEEEEeecH---------HHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 555656799999987531 1111233344555566666655 455544111 2222 25677788999999
Q ss_pred CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHH
Q 014581 245 EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAE 324 (422)
Q Consensus 245 dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~ 324 (422)
|.|.....+. .+ +.++..++.+++.+.. ++||-++|||++.+++++
T Consensus 146 D~IKTsTG~~---------------------~~--------~at~~~v~~~~~~~~~-----~v~ik~aGGikt~~~~l~ 191 (203)
T cd00959 146 DFIKTSTGFG---------------------PG--------GATVEDVKLMKEAVGG-----RVGVKAAGGIRTLEDALA 191 (203)
T ss_pred CEEEcCCCCC---------------------CC--------CCCHHHHHHHHHHhCC-----CceEEEeCCCCCHHHHHH
Confidence 9996542110 01 1223445556666542 799999999999999999
Q ss_pred HHHhCCCEEE
Q 014581 325 FILLGANTVQ 334 (422)
Q Consensus 325 ~l~aGAd~V~ 334 (422)
++.+||+-+.
T Consensus 192 ~~~~g~~riG 201 (203)
T cd00959 192 MIEAGATRIG 201 (203)
T ss_pred HHHhChhhcc
Confidence 9999998553
No 181
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=98.14 E-value=0.00048 Score=65.20 Aligned_cols=151 Identities=16% Similarity=0.220 Sum_probs=102.9
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccC-CCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFS-CPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~s-cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
++.+++ +++.|+=+-+| -.+|+.|. +.+.++|+|.|-+|.= |. ..+.++++.+|+. +
T Consensus 51 i~~ir~-~t~~~~DvHLM-v~~P~~~i---~~~~~aGad~it~H~Ea~~----------------~~~~~~i~~Ik~~-G 108 (229)
T PRK09722 51 VSQVKK-LASKPLDVHLM-VTDPQDYI---DQLADAGADFITLHPETIN----------------GQAFRLIDEIRRA-G 108 (229)
T ss_pred HHHHHh-cCCCCeEEEEE-ecCHHHHH---HHHHHcCCCEEEECccCCc----------------chHHHHHHHHHHc-C
Confidence 334444 34788889998 45787754 5566789999999862 11 1244567777776 5
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
.-..+-+.|. +.+ +..+.+... +|.|.+...- -|++|....|.+++.|+++++.
T Consensus 109 ~kaGlalnP~-T~~-~~l~~~l~~-vD~VLvMsV~-----------------------PGf~GQ~fi~~~l~KI~~lr~~ 162 (229)
T PRK09722 109 MKVGLVLNPE-TPV-ESIKYYIHL-LDKITVMTVD-----------------------PGFAGQPFIPEMLDKIAELKAL 162 (229)
T ss_pred CCEEEEeCCC-CCH-HHHHHHHHh-cCEEEEEEEc-----------------------CCCcchhccHHHHHHHHHHHHH
Confidence 5667777886 333 333444433 6877654311 2345666678889999999887
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhH-HHh
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG-VMM 341 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgta-ll~ 341 (422)
..+. +.++.|-..|||. .+.+.++..+|||.+.+||+ ++.
T Consensus 163 ~~~~--~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 163 RERN--GLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred HHhc--CCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcC
Confidence 6532 1257799999997 88999999999999999965 664
No 182
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.14 E-value=0.00015 Score=66.05 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEe
Q 014581 234 EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI 313 (422)
Q Consensus 234 ~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~ 313 (422)
+-++.+.+.|+|.|.+...+.+. + ..+.. .+..++.++++++.. ++||++.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~------~------------~~~~~----~~~~~~~~~~~~~~~-------~~pv~a~ 156 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTP------T------------KPGAG----PPLGLELLREIAELV-------EIPVVAI 156 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCC------C------------CCCCC----CCCCHHHHHHHHHhC-------CCCEEEE
Confidence 45667888999999875443220 0 00110 134456777777653 7999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 314 GGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 314 GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
|||. .+++.+++.+||++|.+||+++.+
T Consensus 157 GGi~-~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 157 GGIT-PENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred CCCC-HHHHHHHHHcCCCEEEEehHhhcC
Confidence 9995 799999999999999999999875
No 183
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=98.12 E-value=0.00048 Score=65.67 Aligned_cols=204 Identities=15% Similarity=0.197 Sum_probs=125.4
Q ss_pred CHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHHHHHHhhCCC
Q 014581 70 NYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPD 149 (422)
Q Consensus 70 ~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~ 149 (422)
++-..+.+.++||-++-+.+... ..+.|++..++++ .+++++.++++.... +
T Consensus 18 D~~SAr~~e~~Gf~ai~~sg~~~------------------------a~s~G~pD~~~lt---~~e~~~~~~~I~~~~-~ 69 (238)
T PF13714_consen 18 DALSARLAERAGFDAIATSGAGV------------------------AASLGYPDGGLLT---LTEMLAAVRRIARAV-S 69 (238)
T ss_dssp SHHHHHHHHHTT-SEEEEHHHHH------------------------HHHTTS-SSS-S----HHHHHHHHHHHHHHS-S
T ss_pred CHHHHHHHHHcCCCEEEechHHH------------------------HHHcCCCCCCCCC---HHHHHHHHHHHHhhh-c
Confidence 46667777889999887766543 2334666666554 888888888888765 8
Q ss_pred CeEEEEeCCCC--CHHHHHHHHHHHHHhCCCEEEEccC-CCCCCCccccccccccChhHHHHHHHHHhhc---cCccEEE
Q 014581 150 KILIASIMEEY--NKAAWEELIDRVEETGIDAIEVNFS-CPHGMPERKMGAAVGQDCRLLEEVCGWINAK---ATVPVWA 223 (422)
Q Consensus 150 ~pvi~si~~~~--~~~~~~~~a~~~~~aGaD~iElN~s-cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~---~~iPv~v 223 (422)
.||++-+-.|+ ++..+.+.+++++++|+.+|.|.=. |-+. +..+. +++...+=+++.++. .+.-|+.
T Consensus 70 iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~------~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~A 142 (238)
T PF13714_consen 70 IPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHG------GKQLV-SPEEMVAKIRAAVDARRDPDFVIIA 142 (238)
T ss_dssp SEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTS------TT-B---HHHHHHHHHHHHHHHSSTTSEEEE
T ss_pred CcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCC------CCcee-CHHHHHHHHHHHHHhccCCeEEEEE
Confidence 99999996554 3888999999999999999998633 3321 11222 333333333333332 2445566
Q ss_pred EECCCC------CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 224 KMTPNI------TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 224 Kl~~~~------~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
+.-... ++..+=+++..++|||.|.+.+.. ..+.++++.+
T Consensus 143 RTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~----------------------------------~~~~i~~~~~ 188 (238)
T PF13714_consen 143 RTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQ----------------------------------SEEEIERIVK 188 (238)
T ss_dssp EECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSS----------------------------------SHHHHHHHHH
T ss_pred eccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCC----------------------------------CHHHHHHHHH
Confidence 653322 223445667789999998655321 1234667777
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHH
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRL 350 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i 350 (422)
.+ +.|+...-+ ...-++.++-.+|...|..+..++..-...+++.
T Consensus 189 ~~-------~~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~ 233 (238)
T PF13714_consen 189 AV-------DGPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLRAAMKAMRDA 233 (238)
T ss_dssp HH-------SSEEEEETT-SSSS-HHHHHHTTESEEEETSHHHHHHHHHHHHH
T ss_pred hc-------CCCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHHHHHHHHHHH
Confidence 77 577766664 2236777888899999999998887533334333
No 184
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.12 E-value=2.6e-05 Score=74.57 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+.+.+.|++.+.+..- +.. .| ++.-+..|+++.+.+ .+|
T Consensus 32 ~dp~~~a~~~~~~g~~~l~ivDL---------d~~------------~g------~~~n~~~i~~i~~~~-------~~p 77 (241)
T PRK14024 32 GSPLDAALAWQRDGAEWIHLVDL---------DAA------------FG------RGSNRELLAEVVGKL-------DVK 77 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEec---------ccc------------CC------CCccHHHHHHHHHHc-------CCC
Confidence 37889999999999999987742 110 01 012247788888876 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|...|||+|.+|+.+++.+||+-|.+||+++.+ |++++++.+.+
T Consensus 78 v~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~-p~l~~~i~~~~ 121 (241)
T PRK14024 78 VELSGGIRDDESLEAALATGCARVNIGTAALEN-PEWCARVIAEH 121 (241)
T ss_pred EEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC-HHHHHHHHHHh
Confidence 999999999999999999999999999999999 99988887765
No 185
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.11 E-value=2.6e-05 Score=73.86 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++++.+.+.|++.+.+++--.. ..| ++..++.++++++.+ ++|
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~--------------------~~g------~~~~~~~i~~i~~~~-------~~p 76 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGA--------------------KAG------KPVNLELIEAIVKAV-------DIP 76 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcc--------------------ccC------CcccHHHHHHHHHHC-------CCC
Confidence 36889999999999999988753110 001 022356777787765 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|++.|||.+.+|+.+++.+||+.|.++++++.+ |.+++++.+.+
T Consensus 77 v~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~-~~~l~ei~~~~ 120 (233)
T PRK00748 77 VQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN-PELVKEACKKF 120 (233)
T ss_pred EEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC-HHHHHHHHHHh
Confidence 999999999999999999999999999999987 77777666543
No 186
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.11 E-value=0.00014 Score=77.12 Aligned_cols=187 Identities=13% Similarity=0.078 Sum_probs=113.6
Q ss_pred HHHHHHHHHhhCCCCeEEEEeCCCC-CHHH-------HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHH
Q 014581 136 MLKEFKQLKALYPDKILIASIMEEY-NKAA-------WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLE 207 (422)
Q Consensus 136 ~l~~i~~~k~~~~~~pvi~si~~~~-~~~~-------~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~ 207 (422)
.++.|+++.+.. ..|+ .+++|. +.++ ..+.++++-++|||-+-||...-.. ++..+..+-..+|+.++
T Consensus 302 ~~~~i~~i~~~~-~ip~--~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~-~~~~~~~~~~~~p~~i~ 377 (538)
T PLN02617 302 MLEVLRRASENV-FVPL--TVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYA-AEEYIASGVKTGKTSIE 377 (538)
T ss_pred HHHHHHHHHhhC-CCCE--EEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhC-hhhhhccccccCHHHHH
Confidence 455566665543 3444 344332 2222 1345667777899999999532111 00011111234678888
Q ss_pred HHHHHHhhc-c----C---c----c------------------------EEEEECCCC--CChHHHHHHHHHcCCCEEEE
Q 014581 208 EVCGWINAK-A----T---V----P------------------------VWAKMTPNI--TDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 208 ~iv~~vr~~-~----~---i----P------------------------v~vKl~~~~--~~~~~~a~~l~~aGadgi~v 249 (422)
++.+..-+. + + . | +.++-.-.. -+..++++.+.+.|+..|.+
T Consensus 378 ~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~ 457 (538)
T PLN02617 378 QISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILL 457 (538)
T ss_pred HHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 888776322 1 1 0 1 222222111 14689999999999998877
Q ss_pred ecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH-h
Q 014581 250 INTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL-L 328 (422)
Q Consensus 250 ~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~-a 328 (422)
++ +|-| |-..|+ .++.++.+++.+ ++|||++||+.+.+|+.+.+. .
T Consensus 458 t~-------id~D--------------Gt~~G~-----d~~l~~~v~~~~-------~ipviasGG~g~~~d~~~~~~~~ 504 (538)
T PLN02617 458 NC-------IDCD--------------GQGKGF-----DIELVKLVSDAV-------TIPVIASSGAGTPEHFSDVFSKT 504 (538)
T ss_pred ee-------cccc--------------ccccCc-----CHHHHHHHHhhC-------CCCEEEECCCCCHHHHHHHHhcC
Confidence 64 2322 122232 256677777765 899999999999999999997 7
Q ss_pred CCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCC
Q 014581 329 GANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFS 364 (422)
Q Consensus 329 GAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~ 364 (422)
||+++..++.|.+.... + .+++++|.++|+.
T Consensus 505 ~~~a~~aa~~fh~~~~~-~----~~~k~~l~~~gi~ 535 (538)
T PLN02617 505 NASAALAAGIFHRKEVP-I----SSVKEHLLEEGIE 535 (538)
T ss_pred CccEEEEEeeeccCCCC-H----HHHHHHHHHCCCc
Confidence 89999999888765333 2 3445667777764
No 187
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.10 E-value=0.00012 Score=69.90 Aligned_cols=157 Identities=19% Similarity=0.184 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCC
Q 014581 165 WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGS 244 (422)
Q Consensus 165 ~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGa 244 (422)
..++|+..++.||++|-++. .. ..+| .+.+.+ +.+++.+++||+.| -++-+..++.+. ...||
T Consensus 63 ~~~~A~~y~~~GA~aISVlT-----e~-~~F~----Gs~~~l----~~v~~~v~~PvL~K--DFIid~~QI~ea-~~~GA 125 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLT-----DQ-SYFG----GSLEDL----KSVSSELKIPVLRK--DFILDEIQIREA-RAFGA 125 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEc-----CC-CcCC----CCHHHH----HHHHHhcCCCEEec--cccCCHHHHHHH-HHcCC
Confidence 35677888999999997662 11 1223 334444 44555568999998 334455555544 34888
Q ss_pred CEEEEecCCcccccc----cc-c--CCCCCCCC----------C-CCCccCCCCCCCcc--hhHHHHHHHHHHHhhccCC
Q 014581 245 EGVSAINTIMSVMGI----DL-K--TLRPEPCV----------E-GYSTPGGYSCKAVH--PIALGKVMSIAKMMKSEFN 304 (422)
Q Consensus 245 dgi~v~n~~~~~~~i----d~-e--~~~p~~~~----------~-~~~~~gG~sG~~i~--p~al~~v~~i~~~~~~~~~ 304 (422)
|+|.++-...+...+ +. . .+++...+ . +- ..=|+....++ ...+....+++..+++
T Consensus 126 DavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga-~iiGINnRdL~t~~vd~~~~~~L~~~ip~--- 201 (247)
T PRK13957 126 SAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGA-EIIGINTRDLDTFQIHQNLVEEVAAFLPP--- 201 (247)
T ss_pred CEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCC-CEEEEeCCCCccceECHHHHHHHHhhCCC---
Confidence 888776543221000 00 0 00000000 0 00 00011111111 2234555667777764
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHH
Q 014581 305 DKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346 (422)
Q Consensus 305 ~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~ 346 (422)
+..+|+-+||.+++|+.++..+ ||+|-||+++|.. ++.
T Consensus 202 --~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~-~d~ 239 (247)
T PRK13957 202 --NIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK-KDI 239 (247)
T ss_pred --CcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC-CCH
Confidence 7789999999999999998876 9999999999987 443
No 188
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=98.10 E-value=0.00032 Score=65.59 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHh
Q 014581 135 TMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWIN 214 (422)
Q Consensus 135 ~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr 214 (422)
.+...++++++.. ..|+++|+-. .+. ......+...|+|+|-+|..|--.-+.. | -++.+...+.+....+.
T Consensus 72 aMa~iv~~v~r~v-~iPvGvNVLr-Nd~---vaA~~IA~a~gA~FIRVN~~tg~~~tdq--G-iieg~A~e~~r~r~~L~ 143 (263)
T COG0434 72 AMAVIVREVVREV-SIPVGVNVLR-NDA---VAALAIAYAVGADFIRVNVLTGAYATDQ--G-IIEGNAAELARYRARLG 143 (263)
T ss_pred HHHHHHHHHHHhc-cccceeeeec-ccc---HHHHHHHHhcCCCEEEEEeeeceEeccc--c-eecchHHHHHHHHHhcc
Confidence 3334456666655 7899999952 222 1222333346999999997653321111 1 23344444555555555
Q ss_pred hccCc--cEEEEECCCCC--ChHHHHHH-HHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 215 AKATV--PVWAKMTPNIT--DITEPARV-ALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 215 ~~~~i--Pv~vKl~~~~~--~~~~~a~~-l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
..+++ -+-||-...+. ++.+.++. ++..++|+|++++...+. |..+
T Consensus 144 ~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~-----------------------------~~d~ 194 (263)
T COG0434 144 SRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGS-----------------------------PPDL 194 (263)
T ss_pred CCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCC-----------------------------CCCH
Confidence 32211 23356544333 56666666 677789999999753220 2234
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhh
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG 343 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~G 343 (422)
+.++.+++.. ++|+++.-|+. ++.+.+++.. ||++.+||.+=.+|
T Consensus 195 ~el~~a~~~~-------~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 195 EELKLAKEAV-------DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred HHHHHHHhcc-------CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEccCC
Confidence 5566666654 79999999995 9999999998 99999999998877
No 189
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=98.10 E-value=4.3e-05 Score=71.26 Aligned_cols=164 Identities=23% Similarity=0.262 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEEC------CCCC------
Q 014581 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT------PNIT------ 230 (422)
Q Consensus 163 ~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~------~~~~------ 230 (422)
+...+.++.+.++|.|+|.+.- +.+-+.+.+.++++++|+.+++|+++--+ +..+
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGG-------------S~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~s 94 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGG-------------SDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPS 94 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECC-------------cccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEE
Confidence 4556788889999999998752 33455678999999999988999998632 1110
Q ss_pred -----C-------hHHHHHHHHHcCC----CEEEEecCCccc-----cc-ccccCCCCCCC--------CCC----CCcc
Q 014581 231 -----D-------ITEPARVALRSGS----EGVSAINTIMSV-----MG-IDLKTLRPEPC--------VEG----YSTP 276 (422)
Q Consensus 231 -----~-------~~~~a~~l~~aGa----dgi~v~n~~~~~-----~~-id~e~~~p~~~--------~~~----~~~~ 276 (422)
+ -.+-++.+.+.+. .+-++.|..... -. ++.++ +... ..+ |-.+
T Consensus 95 vLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~--~~iaa~y~la~~~~g~~~~YlEa 172 (240)
T COG1646 95 VLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDK--EDIAAYYALAEKYLGMPVVYLEA 172 (240)
T ss_pred EecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCc--HHHHHHHHHHHHHhCCeEEEEEe
Confidence 1 1122333333332 222344422110 00 11111 1000 001 1123
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 277 gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
||-.|. |...+.|+ +.+. ..++|..|||+|++++.++..+|||++.+|+.+..+ ++.+.++.+.+
T Consensus 173 gsga~~---Pv~~e~v~---~v~~------~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~-~~~~~~~v~~~ 237 (240)
T COG1646 173 GSGAGD---PVPVEMVS---RVLS------DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEED-PDKALETVEAI 237 (240)
T ss_pred cCCCCC---CcCHHHHH---Hhhc------cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecC-HHHHHHHHHHh
Confidence 443443 33344443 3332 569999999999999999999999999999999988 55555554443
No 190
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.10 E-value=0.00032 Score=66.18 Aligned_cols=78 Identities=18% Similarity=0.063 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEE
Q 014581 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSG 312 (422)
Q Consensus 233 ~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa 312 (422)
.+-+..+.+.|+|+|.+..- .. .+ ++ + .+|..++.++++++.+ ++||++
T Consensus 121 ~~~a~~A~~~gaDYv~~Gpv-~t------~t-K~-----------~-----~~p~gl~~l~~~~~~~-------~iPvvA 169 (221)
T PRK06512 121 RHGAMEIGELRPDYLFFGKL-GA------DN-KP-----------E-----AHPRNLSLAEWWAEMI-------EIPCIV 169 (221)
T ss_pred HHHHHHhhhcCCCEEEECCC-CC------CC-CC-----------C-----CCCCChHHHHHHHHhC-------CCCEEE
Confidence 34455677899999976532 11 01 11 0 0234456666677665 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 313 IGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 313 ~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.||| +.+++.+++.+||++|-+-|+++..
T Consensus 170 IGGI-~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 170 QAGS-DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred EeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 9999 7999999999999999999999964
No 191
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.09 E-value=0.00044 Score=64.77 Aligned_cols=153 Identities=15% Similarity=0.177 Sum_probs=88.8
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.++++++..+ .++-+-++ .++++.+.+. +.++|+|++.++..-+ +...+.++.+++. +
T Consensus 52 ~~~~i~~~~~-~~~~v~l~-v~d~~~~i~~---~~~~g~d~v~vh~~~~----------------~~~~~~~~~~~~~-~ 109 (220)
T PRK05581 52 VVEAIRKVTK-LPLDVHLM-VENPDRYVPD---FAKAGADIITFHVEAS----------------EHIHRLLQLIKSA-G 109 (220)
T ss_pred HHHHHHhcCC-CcEEEEee-eCCHHHHHHH---HHHcCCCEEEEeeccc----------------hhHHHHHHHHHHc-C
Confidence 3445554443 45656665 4556665544 3477999999885311 1233445555554 5
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
+.+++-+.++ +..+.++.+ ..++|++.+..... |.+|....+..++.+.++++.
T Consensus 110 ~~~g~~~~~~--t~~e~~~~~-~~~~d~i~~~~~~~-----------------------g~tg~~~~~~~~~~i~~~~~~ 163 (220)
T PRK05581 110 IKAGLVLNPA--TPLEPLEDV-LDLLDLVLLMSVNP-----------------------GFGGQKFIPEVLEKIRELRKL 163 (220)
T ss_pred CEEEEEECCC--CCHHHHHHH-HhhCCEEEEEEECC-----------------------CCCcccccHHHHHHHHHHHHH
Confidence 5555555443 224445544 34478765432111 111222235556677777665
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.+.. ..+.+|...|||+. +++.+++.+|||+|-+||+++..
T Consensus 164 ~~~~--~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 164 IDER--GLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred HHhc--CCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCC
Confidence 4310 00144668899986 89999999999999999999964
No 192
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.09 E-value=0.00015 Score=67.24 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=91.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCc-----cc-----cccccccChhHHHH----------
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPE-----RK-----MGAAVGQDCRLLEE---------- 208 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~-----~~-----~G~~l~~~~~~v~~---------- 208 (422)
+.++++-+. +.+.++..++++.+.+.|+..||+-+..|+.... .. .|.----+++.+++
T Consensus 3 ~~~vv~Vir-~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 3 LQPVIPVLL-IDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred CCCEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 346777675 5688899999999999999999999887763100 00 11111123333333
Q ss_pred -------HHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 209 -------VCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 209 -------iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
++++.++. ++|++ |....+.| +..+.++|++.|.++-. +..||.
T Consensus 82 SP~~~~~vi~~a~~~-~i~~i----PG~~TptE-i~~A~~~Ga~~vK~FPa---------------------~~~GG~-- 132 (201)
T PRK06015 82 SPGTTQELLAAANDS-DVPLL----PGAATPSE-VMALREEGYTVLKFFPA---------------------EQAGGA-- 132 (201)
T ss_pred CCCCCHHHHHHHHHc-CCCEe----CCCCCHHH-HHHHHHCCCCEEEECCc---------------------hhhCCH--
Confidence 33322221 44443 33333333 33455677776665521 011222
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.+++.++.-++ +++++.+|||. .+++.+++.+|+..+..||.+..
T Consensus 133 --------~yikal~~plp------~~~l~ptGGV~-~~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 133 --------AFLKALSSPLA------GTFFCPTGGIS-LKNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred --------HHHHHHHhhCC------CCcEEecCCCC-HHHHHHHHhCCCeEEEEchhhCC
Confidence 46667776664 89999999996 78999999999988888887764
No 193
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=98.08 E-value=0.0024 Score=62.67 Aligned_cols=234 Identities=14% Similarity=0.129 Sum_probs=134.3
Q ss_pred ceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHH
Q 014581 60 FVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKE 139 (422)
Q Consensus 60 i~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~ 139 (422)
++.+.|. .++-..+-+.++||-++-+.+... ..++|++..|+++ .+++++.
T Consensus 16 ~~~~pg~--~D~lSAri~e~aGf~ai~~ss~~v------------------------a~slG~pD~g~l~---~~e~~~~ 66 (290)
T TIGR02321 16 LFTAMAA--HNPLVAKLAEQAGFGGIWGSGFEL------------------------SASYAVPDANILS---MSTHLEM 66 (290)
T ss_pred CEEeccc--cCHHHHHHHHHcCCCEEEECHHHH------------------------HHHCCCCCcccCC---HHHHHHH
Confidence 4455555 356667777888999887766532 1234666555544 8889998
Q ss_pred HHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccC-CCCCCCccccc-cccccChhHHHHHHHHHhhc
Q 014581 140 FKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFS-CPHGMPERKMG-AAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~s-cP~~~~~~~~G-~~l~~~~~~v~~iv~~vr~~ 216 (422)
++++.+.. +.||++-+-.|+ +.....+.+++++++|+.+|.|.=. .|..-....-| ..+ .+.+...+-++++++.
T Consensus 67 ~~~I~~~~-~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l-~~~ee~~~kI~Aa~~a 144 (290)
T TIGR02321 67 MRAIASTV-SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQEL-VRIEEFQGKIAAATAA 144 (290)
T ss_pred HHHHHhcc-CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccc-cCHHHHHHHHHHHHHh
Confidence 88888765 899999986554 2335778899999999999988421 12210000001 111 2333333444444443
Q ss_pred c-CccE--EEEECCC-----CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 217 A-TVPV--WAKMTPN-----ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 217 ~-~iPv--~vKl~~~-----~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
. +.++ +.+.-.. +++..+=+++..++|||+|.+..... +
T Consensus 145 ~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~---------------------------------~ 191 (290)
T TIGR02321 145 RADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK---------------------------------T 191 (290)
T ss_pred CCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCCC---------------------------------C
Confidence 2 3334 4443221 12344456778899999997653110 1
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCCC
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSS 365 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~s 365 (422)
.+.+.++.+.++. .+||....|-.-.-.+.++-.+| ...|..+..++.. .++.+.+.++.+++..++..
T Consensus 192 ~~ei~~~~~~~~~-----p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~a---a~~a~~~~~~~i~~~g~~~~ 261 (290)
T TIGR02321 192 PDEILAFVKSWPG-----KVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA---AVGAVREVFARIRRDGGIRE 261 (290)
T ss_pred HHHHHHHHHhcCC-----CCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHH---HHHHHHHHHHHHHHcCCccc
Confidence 2445566666632 46786554322112334566677 7889999888765 34445555555555444443
No 194
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=98.07 E-value=0.0013 Score=64.58 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=127.1
Q ss_pred CCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
.||++.... ++-..+-+.++||-++-+-+.... ..+.|++..++++ .++++
T Consensus 16 ~~l~~p~v~---Da~SArl~e~aGf~ai~~sg~~~~-----------------------as~lG~pD~g~l~---~~e~~ 66 (294)
T TIGR02319 16 EILVVPSAY---DALSAKVIQQAGFPAVHMTGSGTS-----------------------ASMLGLPDLGFTS---VSEQA 66 (294)
T ss_pred CcEEeecCc---CHHHHHHHHHcCCCEEEecHHHHH-----------------------HHHcCCCCcCCCC---HHHHH
Confidence 355544433 466667777889988865332210 1124556555443 78889
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccC-----CCCCCCccccccccccChhHHHHHHH
Q 014581 138 KEFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFS-----CPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~s-----cP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
+.++++.+.. +.||++-+-.|+ ++....+.+++++++|+.+|.|.=. |.|.. |..+. +.+...+-++
T Consensus 67 ~~~~~I~~~~-~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~-----~k~lv-~~ee~~~kI~ 139 (294)
T TIGR02319 67 INAKNIVLAV-DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLE-----GKRLI-STEEMTGKIE 139 (294)
T ss_pred HHHHHHHhcc-CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCC-----Ccccc-CHHHHHHHHH
Confidence 8888888765 899999886554 3334677899999999999988421 22211 11122 2233333333
Q ss_pred HHhhcc---CccEEEEECC----CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 212 WINAKA---TVPVWAKMTP----NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 212 ~vr~~~---~iPv~vKl~~----~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
++++.. +.-|+++.-. .+++..+=+++..++|||+|.+.+.
T Consensus 140 Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~-------------------------------- 187 (294)
T TIGR02319 140 AAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM-------------------------------- 187 (294)
T ss_pred HHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC--------------------------------
Confidence 333322 2334444322 1223444567778999999976531
Q ss_pred chhHHHHHHHHHHHhhccCCCCCceE---EEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 285 HPIALGKVMSIAKMMKSEFNDKDYSL---SGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 285 ~p~al~~v~~i~~~~~~~~~~~~ipI---Ia~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
.+.+.++++.+.+ +.|+ +..||-.-.-++.++-.+|.+.|..+..++..-...+++..+.
T Consensus 188 --~~~~ei~~~~~~~-------~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~ 250 (294)
T TIGR02319 188 --LDVEEMKRVRDEI-------DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTE 250 (294)
T ss_pred --CCHHHHHHHHHhc-------CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHHHHHHHHHHHHH
Confidence 1124566677766 3344 4445443334577777889999999998886533334444333
No 195
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.06 E-value=0.00027 Score=67.99 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=95.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH-hhccCccEEEE-----
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI-NAKATVPVWAK----- 224 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v-r~~~~iPv~vK----- 224 (422)
++-+++++|... +-++.+-+.|++-+.||-..-.. -+-+|+.++++++.. .+..-+-|=+|
T Consensus 83 ~~~vqvGGGIR~----e~i~~~l~~Ga~rViigT~Av~~---------~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~ 149 (262)
T PLN02446 83 PGGLQVGGGVNS----ENAMSYLDAGASHVIVTSYVFRD---------GQIDLERLKDLVRLVGKQRLVLDLSCRKKDGR 149 (262)
T ss_pred CCCEEEeCCccH----HHHHHHHHcCCCEEEEchHHHhC---------CCCCHHHHHHHHHHhCCCCEEEEEEEEecCCC
Confidence 366788776642 45566667899999998421110 012488898888876 32211111122
Q ss_pred ----ECC--CCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHH
Q 014581 225 ----MTP--NIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIA 296 (422)
Q Consensus 225 ----l~~--~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~ 296 (422)
+.. ..+ ++.+++..+.+.|+..|.+++- +-| |-+.|+. ++.+++++
T Consensus 150 ~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI-------~rD--------------Gtl~G~d-----~el~~~l~ 203 (262)
T PLN02446 150 YYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGV-------DVE--------------GKRLGID-----EELVALLG 203 (262)
T ss_pred EEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEE-------cCC--------------CcccCCC-----HHHHHHHH
Confidence 111 111 3677888899999999987742 211 2234432 56677787
Q ss_pred HHhhccCCCCCceEEEecCCCCHHHHHHHHHh--CCCEEEEhhHHH
Q 014581 297 KMMKSEFNDKDYSLSGIGGVETGGDAAEFILL--GANTVQVCTGVM 340 (422)
Q Consensus 297 ~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~a--GAd~V~vgtall 340 (422)
+.. ++|||++|||.|.+|+.+...+ |...|.+|++++
T Consensus 204 ~~~-------~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 204 EHS-------PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred hhC-------CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHH
Confidence 775 8999999999999999999987 578999999983
No 196
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.05 E-value=0.00055 Score=64.64 Aligned_cols=147 Identities=22% Similarity=0.201 Sum_probs=86.3
Q ss_pred CCeEEEEeCC----C-CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEE
Q 014581 149 DKILIASIME----E-YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223 (422)
Q Consensus 149 ~~pvi~si~~----~-~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~v 223 (422)
+.|++++=.. + ++.+ ..++.+.++|+|++.+.-+ . |. ...+.+.+.++..++. ++-+++
T Consensus 56 ~i~v~aq~~~~~~~G~~tg~---~~~~~l~~~G~~~vii~~s----e--r~------~~~~e~~~~v~~a~~~-Gl~~I~ 119 (223)
T PRK04302 56 DIPVYAQHVDPVEPGSHTGH---ILPEAVKDAGAVGTLINHS----E--RR------LTLADIEAVVERAKKL-GLESVV 119 (223)
T ss_pred CCeEEeccCCCCCCCCchhh---hHHHHHHHcCCCEEEEecc----c--cc------cCHHHHHHHHHHHHHC-CCeEEE
Confidence 6788875431 1 2222 2367777889999987632 1 11 1223466677666664 554444
Q ss_pred EECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH-HHHHHHHHHHhhcc
Q 014581 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA-LGKVMSIAKMMKSE 302 (422)
Q Consensus 224 Kl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a-l~~v~~i~~~~~~~ 302 (422)
..++ .+-++.+.+.|.+.|.+-++.....+. +.++. .|.. .+.++.+++..
T Consensus 120 -~v~~----~~~~~~~~~~~~~~I~~~p~~~igt~~------------------~~~~~--~~~~i~~~~~~ir~~~--- 171 (223)
T PRK04302 120 -CVNN----PETSAAAAALGPDYVAVEPPELIGTGI------------------PVSKA--KPEVVEDAVEAVKKVN--- 171 (223)
T ss_pred -EcCC----HHHHHHHhcCCCCEEEEeCccccccCC------------------CCCcC--CHHHHHHHHHHHHhcc---
Confidence 2332 234555677888876544431100000 11100 1222 23333444432
Q ss_pred CCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 303 FNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 303 ~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.++||+..|||.+++++.+++..|||+|.+||+++..
T Consensus 172 ---~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 172 ---PDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred ---CCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 1699999999999999999999999999999999975
No 197
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.04 E-value=0.00032 Score=66.11 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=98.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCC
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPN 228 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~ 228 (422)
.++++=+. ..+.++..++++.+.+.|...+|+-+..|+. .+.++++.+..++.. ++-|.+ .+
T Consensus 15 ~~vi~Vvr-~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a-------------~~~i~~l~~~~~~~~p~~~vGa---GT 77 (222)
T PRK07114 15 TGMVPVFY-HADVEVAKKVIKACYDGGARVFEFTNRGDFA-------------HEVFAELVKYAAKELPGMILGV---GS 77 (222)
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH-------------HHHHHHHHHHHHhhCCCeEEee---Ee
Confidence 35555554 4578999999999999999999999876663 133444444433321 233333 33
Q ss_pred CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCC-CCCCCCCC-----ccCCCCCCCcchhH---HHHHHHHHHHh
Q 014581 229 ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRP-EPCVEGYS-----TPGGYSCKAVHPIA---LGKVMSIAKMM 299 (422)
Q Consensus 229 ~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p-~~~~~~~~-----~~gG~sG~~i~p~a---l~~v~~i~~~~ 299 (422)
+.+ .+-++.+.++|+++++--+........-.+..-| .|+....+ ...|..--.++|-. ..+++.++.-+
T Consensus 78 Vl~-~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~ 156 (222)
T PRK07114 78 IVD-AATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPM 156 (222)
T ss_pred CcC-HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccC
Confidence 434 4567889999999986444322100000001011 11110000 00111111223321 34555555544
Q ss_pred hccCCCCCceEEEecCCCC-HHHHHHHHHhCCCEEEEhhHHHh
Q 014581 300 KSEFNDKDYSLSGIGGVET-GGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 300 ~~~~~~~~ipIIa~GGI~s-~~da~~~l~aGAd~V~vgtall~ 341 (422)
+ +++++.+|||.- .+++.+++.+||.+|.+||.++.
T Consensus 157 p------~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 157 P------WTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred C------CCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 3 899999999984 59999999999999999999874
No 198
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.01 E-value=0.0002 Score=67.15 Aligned_cols=147 Identities=14% Similarity=0.200 Sum_probs=88.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCc----c-c-----c-----------------ccccccC
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPE----R-K-----M-----------------GAAVGQD 202 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~----~-~-----~-----------------G~~l~~~ 202 (422)
.++++=+. +.+.++..++++.+.+.|++.||+-+..|+.... + . . |+.+.-.
T Consensus 15 ~~~iaV~r-~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 15 GPVVPVIV-INKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 45666665 5689999999999999999999999877763100 0 0 1 1111111
Q ss_pred hhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 203 CRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
|..-.++++..++ ..+|++ |...++.+ +..+.++|++.|.++-.. ..||
T Consensus 94 P~~~~~vi~~a~~-~~i~~i----PG~~TptE-i~~a~~~Ga~~vKlFPa~---------------------~~gg---- 142 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLI----PGVSTPSE-LMLGMELGLRTFKFFPAE---------------------ASGG---- 142 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEe----CCCCCHHH-HHHHHHCCCCEEEEccch---------------------hccC----
Confidence 1112223332222 144443 33334444 555667777776653210 0122
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
..+++.++.-++ +++++.+|||. .+++.+++.+|+..+..|+.++.
T Consensus 143 ------~~~lk~l~~p~p------~~~~~ptGGV~-~~ni~~~l~ag~v~~vggs~L~~ 188 (212)
T PRK05718 143 ------VKMLKALAGPFP------DVRFCPTGGIS-PANYRDYLALPNVLCIGGSWMVP 188 (212)
T ss_pred ------HHHHHHHhccCC------CCeEEEeCCCC-HHHHHHHHhCCCEEEEEChHhCC
Confidence 245666666553 79999999996 79999999999766666666654
No 199
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.01 E-value=5.6e-05 Score=70.39 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=85.1
Q ss_pred HHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEEC---CCCCC--hHHHHHHHHHcC
Q 014581 169 IDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT---PNITD--ITEPARVALRSG 243 (422)
Q Consensus 169 a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~---~~~~~--~~~~a~~l~~aG 243 (422)
++.+.+.|||-|++=+ | .|.-...+.+.+.+-++.+++++.-++.+|.- +.+++ ....++.+.++|
T Consensus 83 a~~ai~~GAdEiDmVi---n------ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aG 153 (228)
T COG0274 83 AREAIENGADEIDMVI---N------IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAG 153 (228)
T ss_pred HHHHHHcCCCeeeeee---e------HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhC
Confidence 3445566999877643 1 12223356788888888888887655677753 44443 455667789999
Q ss_pred CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHH
Q 014581 244 SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAA 323 (422)
Q Consensus 244 adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~ 323 (422)
+|+|.-+-.+. .+| -+++-++-+++.+.+ ++-|=++|||+|.+|+.
T Consensus 154 AdFVKTSTGf~---------------------~~g--------AT~edv~lM~~~vg~-----~vgvKaSGGIrt~eda~ 199 (228)
T COG0274 154 ADFVKTSTGFS---------------------AGG--------ATVEDVKLMKETVGG-----RVGVKASGGIRTAEDAK 199 (228)
T ss_pred CCEEEcCCCCC---------------------CCC--------CCHHHHHHHHHHhcc-----CceeeccCCcCCHHHHH
Confidence 99996332111 111 134566667777643 78999999999999999
Q ss_pred HHHHhCCCEEEEhhH
Q 014581 324 EFILLGANTVQVCTG 338 (422)
Q Consensus 324 ~~l~aGAd~V~vgta 338 (422)
+++.+||+-+...++
T Consensus 200 ~~i~aga~RiGtSs~ 214 (228)
T COG0274 200 AMIEAGATRIGTSSG 214 (228)
T ss_pred HHHHHhHHHhccccH
Confidence 999999766555543
No 200
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.00 E-value=0.00011 Score=69.85 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=74.7
Q ss_pred HHHHHHHHHhCCCEE--EEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC-------C--CChHH
Q 014581 166 EELIDRVEETGIDAI--EVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN-------I--TDITE 234 (422)
Q Consensus 166 ~~~a~~~~~aGaD~i--ElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~-------~--~~~~~ 234 (422)
...++.+.+.|+|++ ++++..... ....+.+.++.+..+ ...+|+++=.... . ..+..
T Consensus 79 ~~~v~~a~~~Ga~~v~~~~~~~~~~~----------~~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~~~~~~i~~ 147 (235)
T cd00958 79 VASVEDAVRLGADAVGVTVYVGSEEE----------REMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNEKDPDLIAY 147 (235)
T ss_pred hcCHHHHHHCCCCEEEEEEecCCchH----------HHHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCccCHHHHHH
Confidence 333455666789887 555431100 011122333333222 2377887733220 0 12333
Q ss_pred HHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEec
Q 014581 235 PARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIG 314 (422)
Q Consensus 235 ~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~G 314 (422)
.++.+.+.|+|.|.+.++. + ++.++++.+.+ ++||++.|
T Consensus 148 ~~~~a~~~GaD~Ik~~~~~------------------------~----------~~~~~~i~~~~-------~~pvv~~G 186 (235)
T cd00958 148 AARIGAELGADIVKTKYTG------------------------D----------AESFKEVVEGC-------PVPVVIAG 186 (235)
T ss_pred HHHHHHHHCCCEEEecCCC------------------------C----------HHHHHHHHhcC-------CCCEEEeC
Confidence 4677889999999763210 1 24455666654 68999999
Q ss_pred CC--CCHHH----HHHHHHhCCCEEEEhhHHHhh
Q 014581 315 GV--ETGGD----AAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 315 GI--~s~~d----a~~~l~aGAd~V~vgtall~~ 342 (422)
|| .+.+| +.+++.+||++|.+||.++..
T Consensus 187 G~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~ 220 (235)
T cd00958 187 GPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR 220 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC
Confidence 97 67766 777789999999999999976
No 201
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.99 E-value=0.00034 Score=64.34 Aligned_cols=162 Identities=17% Similarity=0.074 Sum_probs=88.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCC
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNI 229 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~ 229 (422)
.++++=+. ..++++..+.++.+.+.|++.+|+-...+.. ..+.+.++..+..+. +.-.+ +
T Consensus 12 ~~~~~v~r-~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~--------------~e~~~~~~~~~~~~~----~g~gt-v 71 (187)
T PRK07455 12 HRAIAVIR-APDLELGLQMAEAVAAGGMRLIEITWNSDQP--------------AELISQLREKLPECI----IGTGT-I 71 (187)
T ss_pred CCEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH--------------HHHHHHHHHhCCCcE----EeEEE-E
Confidence 45666565 5678888999999999999999997643321 112222222222110 11100 1
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCC---CCCCCCCC-----ccCC--CCC--CCcchhHHHHHHHHHH
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRP---EPCVEGYS-----TPGG--YSC--KAVHPIALGKVMSIAK 297 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p---~~~~~~~~-----~~gG--~sG--~~i~p~al~~v~~i~~ 297 (422)
.. .+-++.+.++|+|+++.-..... .++....+. .++..... ...| |-+ |.-.+..++.++.+++
T Consensus 72 l~-~d~~~~A~~~gAdgv~~p~~~~~--~~~~~~~~~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~ 148 (187)
T PRK07455 72 LT-LEDLEEAIAAGAQFCFTPHVDPE--LIEAAVAQDIPIIPGALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQG 148 (187)
T ss_pred Ec-HHHHHHHHHcCCCEEECCCCCHH--HHHHHHHcCCCEEcCcCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHh
Confidence 11 24566777788887754322110 000000000 01100000 0000 000 0000123566777777
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.++ ++|+++.||| +++++.+++.+||++|.++|+++.
T Consensus 149 ~~~------~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 149 PLG------HIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred hCC------CCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 653 6999999999 589999999999999999999864
No 202
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.98 E-value=6.2e-05 Score=71.76 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++++.+.+.|++.+.+.+-... ..+. ....+.|+++.+.. ++|
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~--------------------~~~~------~~~~~~i~~i~~~~-------~~~ 78 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGA--------------------FEGE------RKNAEAIEKIIEAV-------GVP 78 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhh--------------------hcCC------cccHHHHHHHHHHc-------CCc
Confidence 46889999999999999976642210 0010 11245667777665 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
++..|||++.+|+..++.+||+.|.+|+..+.+ |.++.++.+.+
T Consensus 79 l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~-~~~~~~i~~~~ 122 (241)
T PRK13585 79 VQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN-PEIVRELSEEF 122 (241)
T ss_pred EEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC-hHHHHHHHHHh
Confidence 999999999999999999999999999999988 77777766653
No 203
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.97 E-value=8e-05 Score=70.63 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=71.0
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++++.+.+.|++.+.+++-... +... +.-+..++++++.. ++|
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~---------------------~~~~-----~~n~~~~~~i~~~~-------~~p 76 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDAS---------------------KRGR-----EPLFELISNLAEEC-------FMP 76 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCc---------------------ccCC-----CCCHHHHHHHHHhC-------CCC
Confidence 36889999999999999988864221 0011 12246677787765 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
|++.|||++.+|+.+++.+||+.|.++|+++.+ |.+++++.+.
T Consensus 77 v~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~-~~~~~~~~~~ 119 (232)
T TIGR03572 77 LTVGGGIRSLEDAKKLLSLGADKVSINTAALEN-PDLIEEAARR 119 (232)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEChhHhcC-HHHHHHHHHH
Confidence 999999999999999999999999999999987 8877777644
No 204
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.93 E-value=0.0003 Score=66.70 Aligned_cols=140 Identities=12% Similarity=0.110 Sum_probs=88.3
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCc
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~i 219 (422)
++++.+. .+.|+.++=+ -.+.++.. ++.+.|++.+-++-. . . +++.++++.+..-+
T Consensus 65 i~~i~~~-~~~pv~~gGG-Irs~edv~----~l~~~G~~~vivGta------------a-~-~~~~l~~~~~~~g~---- 120 (228)
T PRK04128 65 VKNIIRE-TGLKVQVGGG-LRTYESIK----DAYEIGVENVIIGTK------------A-F-DLEFLEKVTSEFEG---- 120 (228)
T ss_pred HHHHHhh-CCCCEEEcCC-CCCHHHHH----HHHHCCCCEEEECch------------h-c-CHHHHHHHHHHcCC----
Confidence 4444443 3678877643 23566643 344569999987621 1 2 57778887765522
Q ss_pred cEEEEEC--------CCC-----CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 220 PVWAKMT--------PNI-----TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 220 Pv~vKl~--------~~~-----~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
+++-+- .++ .+..++++.+.+. +..+++++- |-+ |-..|+.
T Consensus 121 -ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i-------~~d--------------Gt~~G~d--- 174 (228)
T PRK04128 121 -ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSI-------ERD--------------GTLTGIE--- 174 (228)
T ss_pred -EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEec-------cch--------------hcccCHH---
Confidence 222110 011 1356788888887 888776642 211 2233421
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++.+... ++|||++|||.+.+|+.+...+|+++|.+|++++..
T Consensus 175 -------~l~~~~~------~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 175 -------EIERFWG------DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred -------HHHHhcC------CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 2333322 799999999999999999999999999999999865
No 205
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.93 E-value=0.0011 Score=61.89 Aligned_cols=92 Identities=22% Similarity=0.267 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEE
Q 014581 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSG 312 (422)
Q Consensus 233 ~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa 312 (422)
.+-++.+.+.|+|+|.+..-++. .+ + .+. .|..++.++.+++.. .+|+++
T Consensus 114 ~eea~~A~~~g~DYv~~GpifpT------~t-K-----------~~~-----~~~G~~~l~~~~~~~-------~iP~vA 163 (211)
T COG0352 114 LEEALEAEELGADYVGLGPIFPT------ST-K-----------PDA-----PPLGLEGLREIRELV-------NIPVVA 163 (211)
T ss_pred HHHHHHHHhcCCCEEEECCcCCC------CC-C-----------CCC-----CccCHHHHHHHHHhC-------CCCEEE
Confidence 55677888999999976543321 11 0 111 244456667676654 699999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEhhHHHhh--hhHHHHHHHHHHH
Q 014581 313 IGGVETGGDAAEFILLGANTVQVCTGVMMH--GYGLVKRLCEELK 355 (422)
Q Consensus 313 ~GGI~s~~da~~~l~aGAd~V~vgtall~~--Gp~~i~~i~~~l~ 355 (422)
.|||. .+.+.+.+.+||++|-+-|+++.. .....+++.+.++
T Consensus 164 IGGi~-~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~ 207 (211)
T COG0352 164 IGGIN-LENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE 207 (211)
T ss_pred EcCCC-HHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHH
Confidence 99995 999999999999999999999974 1233455554443
No 206
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.93 E-value=9e-05 Score=70.58 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=72.1
Q ss_pred CChHHHHHHHHH-cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCc
Q 014581 230 TDITEPARVALR-SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDY 308 (422)
Q Consensus 230 ~~~~~~a~~l~~-aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~i 308 (422)
.++.++|+.+.+ .|++.+.+..- +.. ..+ ++.-++.|+++.+.+ .+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDL---------d~a-----------~~~------~~~n~~~I~~i~~~~-------~~ 77 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDL---------IGA-----------KAQ------HAREFDYIKSLRRLT-------TK 77 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEEC---------ccc-----------ccC------CcchHHHHHHHHhhc-------CC
Confidence 367789999998 79999987742 110 011 133457788888765 79
Q ss_pred eEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 309 SLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 309 pIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
||...|||+|.+|+.+++.+||+-|.++|..+.+ |.+++++.+..
T Consensus 78 pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~-~~~l~~~~~~f 122 (234)
T PRK13587 78 DIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD-TDWLKEMAHTF 122 (234)
T ss_pred eEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcC-HHHHHHHHHHc
Confidence 9999999999999999999999999999999998 88888876653
No 207
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=97.92 E-value=0.00042 Score=65.76 Aligned_cols=210 Identities=19% Similarity=0.193 Sum_probs=121.7
Q ss_pred CCCCcceEeCCeecCCC--ceecCCCCC-CCHHHHHHHHHc--CCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcc
Q 014581 43 AEPDLSITVNGLQMPNP--FVIGSGPPG-TNYTVMKRAFDE--GWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKG 117 (422)
Q Consensus 43 ~~~dL~~~~~Gl~l~nP--i~~AAg~~~-~~~~~~~~~~~~--G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~ 117 (422)
...+.-+++.+..+..+ +++.|||-+ .+.|++...++. ..|+-.++ -|--+||-
T Consensus 27 ~~~~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lR--------GgafKPRT------------- 85 (286)
T COG2876 27 KKEDTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALR--------GGAFKPRT------------- 85 (286)
T ss_pred cccceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhcc--------CCcCCCCC-------------
Confidence 44455566665556554 788888876 577888777652 34433322 12223432
Q ss_pred cccccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccc
Q 014581 118 QIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGA 197 (422)
Q Consensus 118 ~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~ 197 (422)
+.+.|+..| ++-+..++++++.+ +.|++.-|+ ++.++..++ + .+|.|++.. |+
T Consensus 86 SPYsFQGlg-------e~gL~~l~~a~~~~-Gl~vvtEvm---~~~~~e~~~----~-y~DilqvGA--------RN--- 138 (286)
T COG2876 86 SPYSFQGLG-------EEGLKLLKRAADET-GLPVVTEVM---DVRDVEAAA----E-YADILQVGA--------RN--- 138 (286)
T ss_pred CcccccccC-------HHHHHHHHHHHHHc-CCeeEEEec---CHHHHHHHH----h-hhhHHHhcc--------cc---
Confidence 123345444 45567788888876 899999997 455543332 3 267776542 22
Q ss_pred ccccChhHHHHHHHHHhhccCccEEEEECCC--CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCc
Q 014581 198 AVGQDCRLLEEVCGWINAKATVPVWAKMTPN--ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYST 275 (422)
Q Consensus 198 ~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~--~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~ 275 (422)
+|+.+.+.++=+ .++||++|=... +++....|+-+...|-..|++.-|... .++..+ .
T Consensus 139 --MQNF~LLke~G~-----~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIR--tfe~~T--R--------- 198 (286)
T COG2876 139 --MQNFALLKEVGR-----QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIR--TFEKAT--R--------- 198 (286)
T ss_pred --hhhhHHHHHhcc-----cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccc--cccccc--c---------
Confidence 366666554432 389999995432 223444556677888888887765432 111111 0
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHH-H-----HHHHHHhCCCEEEEh
Q 014581 276 PGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGG-D-----AAEFILLGANTVQVC 336 (422)
Q Consensus 276 ~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~-d-----a~~~l~aGAd~V~vg 336 (422)
.-+.+..|..+++.. ++|||+.=-=.+++ | +..++++|||++|+=
T Consensus 199 ---------ntLDi~aV~~~kq~T-------HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 199 ---------NTLDISAVPILKQET-------HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred ---------ceechHHHHHHHhhc-------CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 123345666667654 89999863322222 2 455677899999974
No 208
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.92 E-value=0.00022 Score=68.96 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=86.4
Q ss_pred CCeEEEEeCCCCCHH-HH-------HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCcc
Q 014581 149 DKILIASIMEEYNKA-AW-------EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220 (422)
Q Consensus 149 ~~pvi~si~~~~~~~-~~-------~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iP 220 (422)
+.|||+++.. .+|. .| .++|+.++++||++|-+.. .+ ..++ .+. +.++.+++.+++|
T Consensus 49 ~~~vIaeik~-~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt-----e~-~~f~----g~~----~~l~~v~~~v~iP 113 (260)
T PRK00278 49 KPAVIAEVKK-ASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT-----DE-RFFQ----GSL----EYLRAARAAVSLP 113 (260)
T ss_pred CCeEEEEeeC-CCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec-----cc-ccCC----CCH----HHHHHHHHhcCCC
Confidence 4799999963 3333 33 7899999999999996542 11 1122 233 3455666677999
Q ss_pred EEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhh
Q 014581 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMK 300 (422)
Q Consensus 221 v~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~ 300 (422)
|+.|= ++.+.. -+..+.++|||+|.+..+... +..++.+.+..+.+
T Consensus 114 vl~kd--fi~~~~-qi~~a~~~GAD~VlLi~~~l~------------------------------~~~l~~li~~a~~l- 159 (260)
T PRK00278 114 VLRKD--FIIDPY-QIYEARAAGADAILLIVAALD------------------------------DEQLKELLDYAHSL- 159 (260)
T ss_pred EEeee--ecCCHH-HHHHHHHcCCCEEEEEeccCC------------------------------HHHHHHHHHHHHHc-
Confidence 99863 344444 578889999999998876421 11122222222222
Q ss_pred ccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 301 SEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 301 ~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
++.+++ -+++.+++.++..+||+.+.+..
T Consensus 160 ------Gl~~lv--evh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 160 ------GLDVLV--EVHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred ------CCeEEE--EeCCHHHHHHHHHcCCCEEEECC
Confidence 444443 58899999999999999999874
No 209
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.91 E-value=0.00062 Score=71.73 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=52.8
Q ss_pred hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEE
Q 014581 232 ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLS 311 (422)
Q Consensus 232 ~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipII 311 (422)
..+.++.+.++|+|.|++-.. .|.+ +.+++.|+++++.++ +++|+
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a------------------------~G~s-----~~~~~~i~~ik~~~~------~~~v~ 286 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSS------------------------QGNS-----IYQIDMIKKLKSNYP------HVDII 286 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecC------------------------CCCc-----hHHHHHHHHHHhhCC------CceEE
Confidence 467889999999998865431 1111 334677888888753 68877
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 312 GIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 312 a~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+ |.|.|.+++.+++.+|||+|-+|
T Consensus 287 a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 287 A-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred E-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 7 89999999999999999999764
No 210
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.90 E-value=0.00027 Score=67.54 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=93.8
Q ss_pred HHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc
Q 014581 139 EFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
.|+++.+.. .| +++++|. +.++ ++.+-++|+|-+.||... ..+|+.++++ ...-+
T Consensus 65 ~i~~i~~~~--~~--v~vGGGIrs~e~----~~~~l~~Ga~rvvigT~a-------------~~~p~~l~~~-~~~~~-- 120 (241)
T PRK14114 65 VLEKLSEFA--EH--IQIGGGIRSLDY----AEKLRKLGYRRQIVSSKV-------------LEDPSFLKFL-KEIDV-- 120 (241)
T ss_pred HHHHHHhhc--Cc--EEEecCCCCHHH----HHHHHHCCCCEEEECchh-------------hCCHHHHHHH-HHhCC--
Confidence 345554432 24 4676554 3444 344446799999887421 2467777777 33211
Q ss_pred CccEEE--E-----ECC--CC--CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 218 TVPVWA--K-----MTP--NI--TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 218 ~iPv~v--K-----l~~--~~--~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
.+-+.+ | ... .. .++.++++.+.+.|+..|++++- |-+ |-.+|+.
T Consensus 121 ~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI-------~rd--------------Gt~~G~d--- 176 (241)
T PRK14114 121 EPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEI-------EKD--------------GTLQEHD--- 176 (241)
T ss_pred CEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEee-------chh--------------hcCCCcC---
Confidence 111111 1 111 01 13688999999999999987742 211 2234432
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHh-----C-CCEEEEhhHHHhh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL-----G-ANTVQVCTGVMMH 342 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~a-----G-Ad~V~vgtall~~ 342 (422)
++.++++++.. ++|||++|||.+.+|+.+...+ | +++|.+|++++..
T Consensus 177 --~el~~~l~~~~-------~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g 229 (241)
T PRK14114 177 --FSLTRKIAIEA-------EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEG 229 (241)
T ss_pred --HHHHHHHHHHC-------CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCC
Confidence 46677777764 7999999999999999999886 6 9999999998765
No 211
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.90 E-value=0.0011 Score=63.35 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
.||.+.... ++-..+.+.++|+-++-+++... ....|+++.+.+ ++++++
T Consensus 12 ~~i~~~~ay---D~~sA~i~e~aG~dai~v~~s~~------------------------a~~~G~pD~~~v---tl~em~ 61 (240)
T cd06556 12 ERFATLTAY---DYSMAKQFADAGLNVMLVGDSQG------------------------MTVAGYDDTLPY---PVNDVP 61 (240)
T ss_pred CeEEEecCC---CHHHHHHHHHcCCCEEEEChHHH------------------------HHhcCCCCCCCc---CHHHHH
Confidence 356544433 46667777788999888776432 123455554433 489999
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCC--CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhh
Q 014581 138 KEFKQLKALYPDKILIASIMEEY--NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINA 215 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~--~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~ 215 (422)
..++.+.+..+..||++-+-.++ ++++..+.++++.++|+++|-|-= ..+ ..+.++++++
T Consensus 62 ~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED-----------------~~~-~~~~i~ai~~ 123 (240)
T cd06556 62 YHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEG-----------------GEW-HIETLQMLTA 123 (240)
T ss_pred HHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcC-----------------cHH-HHHHHHHHHH
Confidence 99988888765679999885443 557888889999999999997641 112 3334556655
Q ss_pred ccCccEEEEECCC-------------------CCChHHHHHHHHHcCCCEEEEe
Q 014581 216 KATVPVWAKMTPN-------------------ITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 216 ~~~iPv~vKl~~~-------------------~~~~~~~a~~l~~aGadgi~v~ 250 (422)
. .+||+..+-.. ..+..+-+++++++|||+|.+-
T Consensus 124 a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e 176 (240)
T cd06556 124 A-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME 176 (240)
T ss_pred c-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5 48888876531 1123455777889999999765
No 212
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.90 E-value=0.00034 Score=66.52 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=93.2
Q ss_pred HHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH-hhc
Q 014581 139 EFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI-NAK 216 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v-r~~ 216 (422)
.|+++.+.. -.| +++++|. +.++ ++++-+.|+|-+.+|.. .-.+|+.++++.+.. .+.
T Consensus 64 ~i~~i~~~~-~~~--v~vGGGIrs~e~----~~~~l~~Ga~kvvigt~-------------a~~~p~~~~~~~~~~g~~~ 123 (232)
T PRK13586 64 YIKEISKIG-FDW--IQVGGGIRDIEK----AKRLLSLDVNALVFSTI-------------VFTNFNLFHDIVREIGSNR 123 (232)
T ss_pred HHHHHHhhC-CCC--EEEeCCcCCHHH----HHHHHHCCCCEEEECch-------------hhCCHHHHHHHHHHhCCCC
Confidence 455554422 124 5565553 4444 34444579999988732 125678888887776 222
Q ss_pred c--------CccEEEEECCC-CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 217 A--------TVPVWAKMTPN-ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 217 ~--------~iPv~vKl~~~-~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
. +..|.++-.-. -.++.++++.+.+.|+..+.+++- |-+ |-.+|+.
T Consensus 124 ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI-------~~d--------------Gt~~G~d---- 178 (232)
T PRK13586 124 VLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYI-------SNE--------------GTTKGID---- 178 (232)
T ss_pred EEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecc-------ccc--------------ccCcCcC----
Confidence 1 11222211100 114678999999999999887752 211 2233432
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++.++++++. ..|+|++|||.+.+|+.+...+|+++|.+|++++..
T Consensus 179 -~el~~~~~~~--------~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 179 -YNVKDYARLI--------RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred -HHHHHHHHhC--------CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhcC
Confidence 3455555543 235999999999999999999999999999998743
No 213
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.90 E-value=0.00011 Score=67.77 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=85.2
Q ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 137 LKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 137 l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
++.|+.+++++|+..|++--. .+.++ ++.+.++|++++. +|+. ++ ++++..++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV--~~~e~----a~~a~~aGA~Fiv----SP~~------------~~----~v~~~~~~~ 100 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTV--LTAEQ----AEAAIAAGAQFIV----SPGF------------DP----EVIEYAREY 100 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES----SHHH----HHHHHHHT-SEEE----ESS--------------H----HHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeeEEEec--cCHHH----HHHHHHcCCCEEE----CCCC------------CH----HHHHHHHHc
Confidence 345666777777765554322 34444 5566678999985 4553 22 344444433
Q ss_pred cCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHH
Q 014581 217 ATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIA 296 (422)
Q Consensus 217 ~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~ 296 (422)
++|++ |....+.|+ ..+.++|++.|.++-.. ..||. .+++.++
T Consensus 101 -~i~~i----PG~~TptEi-~~A~~~G~~~vK~FPA~---------------------~~GG~----------~~ik~l~ 143 (196)
T PF01081_consen 101 -GIPYI----PGVMTPTEI-MQALEAGADIVKLFPAG---------------------ALGGP----------SYIKALR 143 (196)
T ss_dssp -TSEEE----EEESSHHHH-HHHHHTT-SEEEETTTT---------------------TTTHH----------HHHHHHH
T ss_pred -CCccc----CCcCCHHHH-HHHHHCCCCEEEEecch---------------------hcCcH----------HHHHHHh
Confidence 88887 333444554 46679999999877311 12332 4666666
Q ss_pred HHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 297 KMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 297 ~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.-++ +++++.+|||. .+++.+++.+|+.+|.+||.++.+
T Consensus 144 ~p~p------~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 144 GPFP------DLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp TTTT------T-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred ccCC------CCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhcCH
Confidence 6553 89999999997 689999999999999999999865
No 214
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.89 E-value=0.0001 Score=69.86 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
++.++++.+.+. ++.+.+...-.. ..|. +.-++.++++++.. ++||
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga-----------------------~~g~---~~n~~~i~~i~~~~-------~~pv 76 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA-----------------------FEGK---PKNLDVVKNIIRET-------GLKV 76 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch-----------------------hcCC---cchHHHHHHHHhhC-------CCCE
Confidence 678899999888 999887543210 1111 22356777777764 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
+++|||+|.+|+.+++.+||+.|.+||+.+ + |.+++++.+.
T Consensus 77 ~~gGGIrs~edv~~l~~~G~~~vivGtaa~-~-~~~l~~~~~~ 117 (228)
T PRK04128 77 QVGGGLRTYESIKDAYEIGVENVIIGTKAF-D-LEFLEKVTSE 117 (228)
T ss_pred EEcCCCCCHHHHHHHHHCCCCEEEECchhc-C-HHHHHHHHHH
Confidence 999999999999999999999999999999 7 8888877654
No 215
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.89 E-value=0.0027 Score=60.70 Aligned_cols=205 Identities=15% Similarity=0.159 Sum_probs=118.3
Q ss_pred CCcceEeCCeecCCCceecCCCCC-CCHHHHHHHH----HcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccc
Q 014581 45 PDLSITVNGLQMPNPFVIGSGPPG-TNYTVMKRAF----DEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQI 119 (422)
Q Consensus 45 ~dL~~~~~Gl~l~nPi~~AAg~~~-~~~~~~~~~~----~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~ 119 (422)
.+..+.+.+..+..+.++| ||-+ .+.+++...+ ++|+.++ -|+.+- ||- ..
T Consensus 2 ~~~~~~~~~~~~~~~~~ia-GPC~vEs~e~~~~~a~~~~~~g~~~~-r~g~~k---------pRt-------------s~ 57 (250)
T PRK13397 2 IDIMSDFQNKTCSKNNFIV-GPCSIESYDHIRLAASSAKKLGYNYF-RGGAYK---------PRT-------------SA 57 (250)
T ss_pred CcceEEecCccCCCCcEEe-ccCccCCHHHHHHHHHHHHHcCCCEE-EecccC---------CCC-------------CC
Confidence 4556677788888887776 6654 4555554443 3565433 333331 221 01
Q ss_pred cccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccc
Q 014581 120 IGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAV 199 (422)
Q Consensus 120 ~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l 199 (422)
..|+.+| . +-++++.+.++++ +.|++..+. ++++ ++.+.+ .+|++.|--. .
T Consensus 58 ~sf~G~G------~-~gl~~L~~~~~~~-Gl~~~Tev~---d~~~----v~~~~e-~vdilqIgs~-------------~ 108 (250)
T PRK13397 58 ASFQGLG------L-QGIRYLHEVCQEF-GLLSVSEIM---SERQ----LEEAYD-YLDVIQVGAR-------------N 108 (250)
T ss_pred cccCCCC------H-HHHHHHHHHHHHc-CCCEEEeeC---CHHH----HHHHHh-cCCEEEECcc-------------c
Confidence 1234444 3 3677788888776 899999996 3433 233444 5899987521 1
Q ss_pred ccChhHHHHHHHHHhhccCccEEEEECC--CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 200 GQDCRLLEEVCGWINAKATVPVWAKMTP--NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 200 ~~~~~~v~~iv~~vr~~~~iPv~vKl~~--~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
.++.+.++++- + +++||++|-.. +..++...++.+.+.|..-|++.-|.... +. +
T Consensus 109 ~~n~~LL~~va----~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~--Y~--~-------------- 165 (250)
T PRK13397 109 MQNFEFLKTLS----H-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRG--YD--V-------------- 165 (250)
T ss_pred ccCHHHHHHHH----c-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCC--CC--C--------------
Confidence 23444444433 2 38999999652 23346677778888998777766532110 00 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEe----cCCCC--HHHHHHHHHhCCCEEEEh
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI----GGVET--GGDAAEFILLGANTVQVC 336 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~----GGI~s--~~da~~~l~aGAd~V~vg 336 (422)
+.-.-..++.+..+++.. ++|||.. +|.+. ..-++.++.+|||++++=
T Consensus 166 ----~~~n~~dl~ai~~lk~~~-------~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE 219 (250)
T PRK13397 166 ----ETRNMLDIMAVPIIQQKT-------DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMME 219 (250)
T ss_pred ----ccccccCHHHHHHHHHHh-------CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEE
Confidence 000022356666777655 6898875 44433 244677788999976664
No 216
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.87 E-value=0.00035 Score=67.85 Aligned_cols=136 Identities=19% Similarity=0.219 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc---cCccEEEEE-------CCCCC--ChHHH
Q 014581 168 LIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK---ATVPVWAKM-------TPNIT--DITEP 235 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~---~~iPv~vKl-------~~~~~--~~~~~ 235 (422)
.++.+.+.|+|++.+-+..-.. ..+.+.+.++++++. .++|+++=. ....+ .+...
T Consensus 98 ~ve~A~~~Gad~v~~~~~~g~~------------~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a 165 (267)
T PRK07226 98 TVEEAIKLGADAVSVHVNVGSE------------TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHA 165 (267)
T ss_pred cHHHHHHcCCCEEEEEEecCCh------------hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHH
Confidence 3455667799998876421110 011233333344333 378887731 11111 13444
Q ss_pred HHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecC
Q 014581 236 ARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGG 315 (422)
Q Consensus 236 a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GG 315 (422)
++.+.+.|+|.|... + .++ .+.++++.+.. ++||.++||
T Consensus 166 ~~~a~e~GAD~vKt~--~----------------------~~~----------~~~l~~~~~~~-------~ipV~a~GG 204 (267)
T PRK07226 166 ARVAAELGADIVKTN--Y----------------------TGD----------PESFREVVEGC-------PVPVVIAGG 204 (267)
T ss_pred HHHHHHHCCCEEeeC--C----------------------CCC----------HHHHHHHHHhC-------CCCEEEEeC
Confidence 677888999999432 0 011 23444555543 799999999
Q ss_pred CC--CHHHHHHHH----HhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHH
Q 014581 316 VE--TGGDAAEFI----LLGANTVQVCTGVMMHGYGLVKRLCEELKDFM 358 (422)
Q Consensus 316 I~--s~~da~~~l----~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m 358 (422)
|. +.+++.+++ .+||+++.+++.++.+ ++ +....+.|...+
T Consensus 205 i~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~-~~-p~~~~~~l~~~v 251 (267)
T PRK07226 205 PKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH-ED-PEAITRAISAVV 251 (267)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC-CC-HHHHHHHHHHHH
Confidence 99 899988886 8999999999999986 44 344445554433
No 217
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.86 E-value=0.00019 Score=65.65 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEE
Q 014581 168 LIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGV 247 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi 247 (422)
-|+.++++|+-++-.--.-|... ....|..-+.||..+.+|.+ ++++||+.|.+.. ++++ |+.++..|+|+|
T Consensus 33 QA~iAE~aGACaVmalervPadi-R~~GgV~RMsDP~mIKei~~----aVsiPVMAk~RiG--HFVE-AQIlE~l~vDYi 104 (296)
T KOG1606|consen 33 QARIAEEAGACAVMALERVPADI-RAQGGVARMSDPRMIKEIKN----AVSIPVMAKVRIG--HFVE-AQILEALGVDYI 104 (296)
T ss_pred HHHHHHhcCcceEeeeccCCHhH-HhcCCeeecCCHHHHHHHHH----hccchhhhhhhhh--hhhH-HHHHHHhccCcc
Confidence 35677788977665433445322 11224444578877666555 4599999998753 4443 778899999998
Q ss_pred E
Q 014581 248 S 248 (422)
Q Consensus 248 ~ 248 (422)
.
T Consensus 105 D 105 (296)
T KOG1606|consen 105 D 105 (296)
T ss_pred c
Confidence 4
No 218
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.86 E-value=0.00015 Score=70.14 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+.+.+.|++.+.+++-... +...| .-++.++++.+.. ++|
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~---------------------~~~~~-----~n~~~i~~i~~~~-------~~p 76 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDAS---------------------KRGSE-----PNYELIENLASEC-------FMP 76 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCC---------------------cCCCc-----ccHHHHHHHHHhC-------CCC
Confidence 37889999999999999988752211 11111 2256777777764 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
|++.|||++.+|+.+++.+||+.|.++|+++.+ |.+++++.+.
T Consensus 77 v~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~-~~~~~~~~~~ 119 (258)
T PRK01033 77 LCYGGGIKTLEQAKKIFSLGVEKVSINTAALED-PDLITEAAER 119 (258)
T ss_pred EEECCCCCCHHHHHHHHHCCCCEEEEChHHhcC-HHHHHHHHHH
Confidence 999999999999999999999999999999877 8877776654
No 219
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.86 E-value=9.7e-05 Score=70.12 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCc
Q 014581 229 ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDY 308 (422)
Q Consensus 229 ~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~i 308 (422)
..++.++|+.+.+.|++.+.+.+- +.. . .| ++..++.|+++++.+ .+
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDL---------daa-----------~---~g---~~~n~~~i~~i~~~~-------~~ 74 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDL---------DAA-----------K---EG---RGSNLELIKEIAKET-------GI 74 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEH---------HHH-----------C---CT---HHHHHHHHHHHHHHS-------SS
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEc---------cCc-----------c---cC---chhHHHHHHHHHhcC-------Cc
Confidence 347899999999999999987741 110 0 11 244567788888876 79
Q ss_pred eEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 309 SLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 309 pIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
||...|||++.+|+.+++.+||+-|.++|..+.+ |.+++++.+..
T Consensus 75 ~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~-~~~l~~~~~~~ 119 (229)
T PF00977_consen 75 PIQVGGGIRSIEDAERLLDAGADRVVIGTEALED-PELLEELAERY 119 (229)
T ss_dssp EEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHC-CHHHHHHHHHH
T ss_pred cEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhc-hhHHHHHHHHc
Confidence 9999999999999999999999999999999988 88888876654
No 220
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.85 E-value=0.00029 Score=68.07 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=76.2
Q ss_pred HHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc---cCccEEEEECC------CCC--ChHHH
Q 014581 167 ELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK---ATVPVWAKMTP------NIT--DITEP 235 (422)
Q Consensus 167 ~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~---~~iPv~vKl~~------~~~--~~~~~ 235 (422)
..++.+.+.|+|+|.+-...-.. ...+.+ +.++++++. .++|+++.+-+ ..+ .+.+.
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~-----------~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~ 161 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSD-----------TEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHA 161 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCc-----------hHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHH
Confidence 34566667899988875421110 111223 334444443 37898885432 111 12334
Q ss_pred HHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecC
Q 014581 236 ARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGG 315 (422)
Q Consensus 236 a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GG 315 (422)
++.+.++|+|+|... + .++ ++.++++.+.. ++||.+.||
T Consensus 162 ~~~a~~~GADyikt~--~----------------------~~~----------~~~l~~~~~~~-------~iPVva~GG 200 (258)
T TIGR01949 162 ARLGAELGADIVKTP--Y----------------------TGD----------IDSFRDVVKGC-------PAPVVVAGG 200 (258)
T ss_pred HHHHHHHCCCEEecc--C----------------------CCC----------HHHHHHHHHhC-------CCcEEEecC
Confidence 577788999999632 0 011 34455666544 799999999
Q ss_pred CC--CHHHHHHHH----HhCCCEEEEhhHHHhh
Q 014581 316 VE--TGGDAAEFI----LLGANTVQVCTGVMMH 342 (422)
Q Consensus 316 I~--s~~da~~~l----~aGAd~V~vgtall~~ 342 (422)
|. +.+++.+.+ .+||+++.+++.++..
T Consensus 201 i~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 201 PKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 99 666665555 8999999999999976
No 221
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.84 E-value=0.00018 Score=68.14 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+.+.+.|++.+.+..-- .. ..|. +..++.++++++.+ ++|
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~---------~~-----------~~g~------~~~~~~i~~i~~~~-------~~p 74 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLD---------GA-----------KEGG------PVNLPVIKKIVRET-------GVP 74 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCC---------cc-----------ccCC------CCcHHHHHHHHHhc-------CCC
Confidence 368899999999999999886421 10 0111 22356777888765 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|...|||.+.+|+.+++.+||+.|.+++.++.+ |..+.++.+.+
T Consensus 75 i~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d-~~~~~~~~~~~ 118 (230)
T TIGR00007 75 VQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN-PDLVKELLKEY 118 (230)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC-HHHHHHHHHHh
Confidence 999999999999999999999999999999987 77766665554
No 222
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.79 E-value=0.0045 Score=60.56 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+++ +.||.+.+--+.+.+ .++++.+.|++.|.+.-+.-. .....+..+++++.
T Consensus 59 ~~~~~~~~~~~a~~~-~vpv~lHlDH~~~~e----~i~~Al~~G~tsVm~d~s~~~----------~~eni~~t~~v~~~ 123 (281)
T PRK06806 59 LHLIGPLMVAAAKQA-KVPVAVHFDHGMTFE----KIKEALEIGFTSVMFDGSHLP----------LEENIQKTKEIVEL 123 (281)
T ss_pred hHHHHHHHHHHHHHC-CCCEEEECCCCCCHH----HHHHHHHcCCCEEEEcCCCCC----------HHHHHHHHHHHHHH
Confidence 344444444444444 789999996444433 345555679999999854211 12233444444443
Q ss_pred HhhccCccEEEEE---C----------CCCCChHHHHHHHHHcCCCEEEEe-cCCcccccccccCCCCCCCCCCCCccCC
Q 014581 213 INAKATVPVWAKM---T----------PNITDITEPARVALRSGSEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPGG 278 (422)
Q Consensus 213 vr~~~~iPv~vKl---~----------~~~~~~~~~a~~l~~aGadgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~gG 278 (422)
.++. ++||-..+ . ..++++.+..+...+.|+|++-+. ++..+ -
T Consensus 124 a~~~-gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg----------------------~ 180 (281)
T PRK06806 124 AKQY-GATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHG----------------------M 180 (281)
T ss_pred HHHc-CCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCC----------------------C
Confidence 3332 55554332 1 012345554444556799999763 32221 0
Q ss_pred CCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEec--CCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIG--GVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 279 ~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~G--GI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+.+. .++.++.++++++.+ ++|+++-| ||. .+++.+++.+|++.|-+.|.+...
T Consensus 181 ~~~~--~~l~~~~L~~i~~~~-------~iPlV~hG~SGI~-~e~~~~~i~~G~~kinv~T~i~~a 236 (281)
T PRK06806 181 YNGD--PNLRFDRLQEINDVV-------HIPLVLHGGSGIS-PEDFKKCIQHGIRKINVATATFNS 236 (281)
T ss_pred CCCC--CccCHHHHHHHHHhc-------CCCEEEECCCCCC-HHHHHHHHHcCCcEEEEhHHHHHH
Confidence 1111 145567788888876 79999999 995 899999999999999999999863
No 223
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.78 E-value=0.00016 Score=68.35 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
...++.+.+.+.|+ ++++++- +-+ |-..|+ .++.++++++.. ++||
T Consensus 142 ~~~~~~~~~~~~g~-~ii~tdI-------~~d--------------Gt~~G~-----d~eli~~i~~~~-------~~pv 187 (221)
T TIGR00734 142 SLEEVRDFLNSFDY-GLIVLDI-------HSV--------------GTMKGP-----NLELLTKTLELS-------EHPV 187 (221)
T ss_pred cHHHHHHHHHhcCC-EEEEEEC-------Ccc--------------ccCCCC-----CHHHHHHHHhhC-------CCCE
Confidence 45667778888898 7766431 111 112232 257777888765 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
|++|||.+.+|+.++..+||++|.+||+++..
T Consensus 188 ia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 188 MLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred EEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 99999999999999888999999999998753
No 224
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.78 E-value=0.00016 Score=69.26 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=66.9
Q ss_pred Ch-HHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 231 DI-TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 231 ~~-~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
++ .+.|+...++|++.+.+..- + + + -.+.++++.+.+ ++|
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVDL--g--------------------------~---~-n~~~i~~i~~~~-------~~~ 78 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIML--G--------------------------P---N-NDDAAKEALHAY-------PGG 78 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEC--C--------------------------C---C-cHHHHHHHHHhC-------CCC
Confidence 45 89999999999999987742 1 0 1 246777787765 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhh---hHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG---YGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~G---p~~i~~i~~~l 354 (422)
|...|||++ +++.+++.+||+-|.++|.++.+. |.+++++.+..
T Consensus 79 v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 79 LQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred EEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHh
Confidence 999999997 999999999999999999999872 55666555443
No 225
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=97.77 E-value=0.0033 Score=60.58 Aligned_cols=196 Identities=18% Similarity=0.168 Sum_probs=117.4
Q ss_pred CCceecCCCCC-CCHHHHHHHH--------HcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccccccccc
Q 014581 58 NPFVIGSGPPG-TNYTVMKRAF--------DEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELI 128 (422)
Q Consensus 58 nPi~~AAg~~~-~~~~~~~~~~--------~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~ 128 (422)
.|+++-|||-+ .+.+.+...+ +.|+. ++.|+.+-++ ||- ..+.|+.+|
T Consensus 15 ~~~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~-~~fK~sf~Ka-------pRT-------------Sp~sFqG~G-- 71 (281)
T PRK12457 15 LPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIP-FVFKASFDKA-------NRS-------------SIHSYRGVG-- 71 (281)
T ss_pred CceEEEecCCcccCHHHHHHHHHHHHHHHHHCCCc-EEeeeccCCC-------CCC-------------CCCCCCCCC--
Confidence 47888888865 3444433332 25555 4667666443 221 111244445
Q ss_pred CCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHH
Q 014581 129 SDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEE 208 (422)
Q Consensus 129 s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~ 208 (422)
+++-++.++++++++ +.|++--|+ ++++. +.+.+. +|.|+|-.. ++++.+++
T Consensus 72 ----~eeGL~iL~~vk~~~-GlpvvTeV~---~~~~~----~~~ae~-vDilQIgAr-------------~~rntdLL-- 123 (281)
T PRK12457 72 ----LDEGLRIFEEVKARF-GVPVITDVH---EVEQA----APVAEV-ADVLQVPAF-------------LARQTDLV-- 123 (281)
T ss_pred ----HHHHHHHHHHHHHHH-CCceEEEeC---CHHHH----HHHhhh-CeEEeeCch-------------hhchHHHH--
Confidence 678888899999887 899999886 34332 333343 899997531 12344444
Q ss_pred HHHHHhhccCccEEEEECCCC--CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 209 VCGWINAKATVPVWAKMTPNI--TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 209 iv~~vr~~~~iPv~vKl~~~~--~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
+++.+ +++||.+|=..+. .+....++.+...|-..|.+.-|... + ||.- ..
T Consensus 124 --~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~---f------------------gy~~---~~ 176 (281)
T PRK12457 124 --VAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSS---F------------------GYDN---LV 176 (281)
T ss_pred --HHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC---C------------------CCCC---cc
Confidence 34433 4899999965332 24566778888999999988876421 0 1110 12
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEe---------------cCCCCH--HHHHHHHHhCCCEEEEhh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGI---------------GGVETG--GDAAEFILLGANTVQVCT 337 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~---------------GGI~s~--~da~~~l~aGAd~V~vgt 337 (422)
..++.|..+++... ++|||.. ||.+.. .=+..++++|||++++=+
T Consensus 177 ~D~~~ip~mk~~~t------~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 177 VDMLGFRQMKRTTG------DLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred cchHHHHHHHhhCC------CCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 33455666666432 6888864 443322 235667789999999864
No 226
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.75 E-value=0.00096 Score=60.82 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
+..+ ++.+.+.|+|++.+..-+... + + .+. .|..++.+.++++.. ++||
T Consensus 104 ~~~e-~~~a~~~g~dYv~~gpvf~T~------s-k-----------~~~-----~~~g~~~l~~~~~~~-------~~pv 152 (180)
T PF02581_consen 104 SLEE-AREAEELGADYVFLGPVFPTS------S-K-----------PGA-----PPLGLDGLREIARAS-------PIPV 152 (180)
T ss_dssp SHHH-HHHHHHCTTSEEEEETSS--S------S-S-----------SS------TTCHHHHHHHHHHHT-------SSCE
T ss_pred cHHH-HHHhhhcCCCEEEECCccCCC------C-C-----------ccc-----cccCHHHHHHHHHhC-------CCCE
Confidence 3444 888889999999877644321 1 1 111 256677778888776 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEhhHH
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVCTGV 339 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vgtal 339 (422)
++.||| +++++.+...+||++|-+-+++
T Consensus 153 ~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 153 YALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp EEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred EEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 999999 6999999999999999998874
No 227
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.75 E-value=0.00034 Score=66.62 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC---------hHHHH
Q 014581 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD---------ITEPA 236 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~---------~~~~a 236 (422)
..-++.+.+.|||.|++-+.--.... + ......+.+.++++..+ ...+|+++=.-+.-.. +...+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~----~-~~~~~~~~i~~v~~~~~-~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ 152 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS----G-NEDEVIEEIAAVVEECH-KYGLKVILEPYLRGEEVADEKKPDLIARAA 152 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT----T-HHHHHHHHHHHHHHHHH-TSEEEEEEEECECHHHBSSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeecccccccc----c-cHHHHHHHHHHHHHHHh-cCCcEEEEEEecCchhhcccccHHHHHHHH
Confidence 34456666779999988653100000 0 00112233333333333 2378888763322111 35677
Q ss_pred HHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce----EEE
Q 014581 237 RVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS----LSG 312 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip----IIa 312 (422)
+.+.+.|+|.|...-+.. . ......++.+++.+... ++| |.+
T Consensus 153 ria~e~GaD~vKt~tg~~-------------------------~-----~~t~~~~~~~~~~~~~~----~~p~~~~Vk~ 198 (236)
T PF01791_consen 153 RIAAELGADFVKTSTGKP-------------------------V-----GATPEDVELMRKAVEAA----PVPGKVGVKA 198 (236)
T ss_dssp HHHHHTT-SEEEEE-SSS-------------------------S-----CSHHHHHHHHHHHHHTH----SSTTTSEEEE
T ss_pred HHHHHhCCCEEEecCCcc-------------------------c-----cccHHHHHHHHHHHHhc----CCCcceEEEE
Confidence 888999999997553210 0 11123334444444321 566 999
Q ss_pred ecCC------CCHHHHHHHHHhCC--CEEEEhhHHHh
Q 014581 313 IGGV------ETGGDAAEFILLGA--NTVQVCTGVMM 341 (422)
Q Consensus 313 ~GGI------~s~~da~~~l~aGA--d~V~vgtall~ 341 (422)
+||| .+.+++.+++.+|| .++..|+.++.
T Consensus 199 sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 199 SGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp ESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred eCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 9999 99999999999999 78888877654
No 228
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.74 E-value=0.0014 Score=60.89 Aligned_cols=135 Identities=20% Similarity=0.229 Sum_probs=78.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCC
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNI 229 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~ 229 (422)
.++.+-+. .+.+++.++ +.+.++|+|+|+-. .+++ .++.+++....+++..+....
T Consensus 52 ~~V~v~vn--~~~~~i~~i---a~~~~~d~Vqlhg~---------------e~~~----~~~~l~~~~~~~~i~~i~~~~ 107 (203)
T cd00405 52 KRVGVFVN--EDLEEILEI---AEELGLDVVQLHGD---------------ESPE----YCAQLRARLGLPVIKAIRVKD 107 (203)
T ss_pred cEEEEEeC--CCHHHHHHH---HHhcCCCEEEECCC---------------CCHH----HHHHHHhhcCCcEEEEEecCC
Confidence 34555442 244554444 44568999998831 1122 344455544667773333221
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
....+ +......|+|++.+ .+... ...|| +|+ +..++.+++++ . ++|
T Consensus 108 ~~~~~-~~~~~~~~aD~il~-dt~~~------------------~~~Gg-~g~---~~~~~~l~~~~--~-------~~P 154 (203)
T cd00405 108 EEDLE-KAAAYAGEVDAILL-DSKSG------------------GGGGG-TGK---TFDWSLLRGLA--S-------RKP 154 (203)
T ss_pred hhhHH-HhhhccccCCEEEE-cCCCC------------------CCCCC-Ccc---eEChHHhhccc--c-------CCC
Confidence 11111 22445678999843 32110 00122 232 33455555444 2 789
Q ss_pred EEEecCCCCHHHHHHHHHhC-CCEEEEhhHHHhh
Q 014581 310 LSGIGGVETGGDAAEFILLG-ANTVQVCTGVMMH 342 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aG-Ad~V~vgtall~~ 342 (422)
+++.||| +++.+.+++.+| +++|.+.|++...
T Consensus 155 vilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 155 VILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred EEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 9999999 899999999999 9999999999876
No 229
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.72 E-value=0.00025 Score=75.13 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=72.9
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+...+.|||-|++.+-...+ .|+.-+...++.|+++++.+ .+|
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~-----------------------~~~~~~~~~~~~i~~i~~~~-------~ip 316 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFR-----------------------DFPLGDLPMLEVLRRASENV-------FVP 316 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCc-----------------------CCcccchhHHHHHHHHHhhC-------CCC
Confidence 368999999999999999877533210 01111233467888888876 799
Q ss_pred EEEecCCCCH-----------HHHHHHHHhCCCEEEEhhHHHhh-----------hhHHHHHHHHHH
Q 014581 310 LSGIGGVETG-----------GDAAEFILLGANTVQVCTGVMMH-----------GYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~-----------~da~~~l~aGAd~V~vgtall~~-----------Gp~~i~~i~~~l 354 (422)
+-..|||++- +++.++|.+|||=|.++|+++.+ +|.+++++.+..
T Consensus 317 ~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~f 383 (538)
T PLN02617 317 LTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVY 383 (538)
T ss_pred EEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHc
Confidence 9999999997 66999999999999999999997 367777766553
No 230
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.70 E-value=0.0033 Score=57.81 Aligned_cols=84 Identities=24% Similarity=0.286 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCc
Q 014581 229 ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDY 308 (422)
Q Consensus 229 ~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~i 308 (422)
..+..+. ..+.+.|+|.+.+.+-+... + ++ + .. .+..++.++++.+... ++
T Consensus 103 ~h~~~e~-~~a~~~g~dyi~~~~v~~t~------~-k~----------~-~~----~~~g~~~l~~~~~~~~------~~ 153 (196)
T TIGR00693 103 THNLEEL-AEAEAEGADYIGFGPIFPTP------T-KK----------D-PA----PPAGVELLREIAATSI------DI 153 (196)
T ss_pred CCCHHHH-HHHhHcCCCEEEECCccCCC------C-CC----------C-CC----CCCCHHHHHHHHHhcC------CC
Confidence 3345554 45788999998875433210 0 11 0 00 0112455666666542 59
Q ss_pred eEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 309 SLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 309 pIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
||++.||| +.+++.+++.+||++|.++++++..
T Consensus 154 pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 154 PIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred CEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 99999999 5999999999999999999999864
No 231
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.69 E-value=0.0027 Score=63.76 Aligned_cols=79 Identities=24% Similarity=0.330 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEE
Q 014581 233 TEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSG 312 (422)
Q Consensus 233 ~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa 312 (422)
.+-+..+.+.|+|+|.+.--+.. .+ +| +. .|..++.++.+++.. ++||++
T Consensus 250 ~~e~~~A~~~GaDYI~lGPvf~T------~t-Kp-----------~~-----~~~Gle~l~~~~~~~-------~iPv~A 299 (347)
T PRK02615 250 PEEMAKAIAEGADYIGVGPVFPT------PT-KP-----------GK-----APAGLEYLKYAAKEA-------PIPWFA 299 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCcCC------CC-CC-----------CC-----CCCCHHHHHHHHHhC-------CCCEEE
Confidence 34466777899999976643321 01 11 11 134467777777655 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 313 IGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 313 ~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.|||. .+++.+++.+||++|.++++++..
T Consensus 300 iGGI~-~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 300 IGGID-KSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred ECCCC-HHHHHHHHHcCCcEEEEeHHHhCC
Confidence 99995 999999999999999999999864
No 232
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.69 E-value=0.03 Score=54.55 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... +.||++.++ ..+.++..+.++.+++.|+|++-+- .|... ..+.+.+.+..+
T Consensus 49 ~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~i~~a~~a~~~Gad~v~v~--pP~y~---------~~~~~~~~~~~~ 116 (281)
T cd00408 49 DEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREAIELARHAEEAGADGVLVV--PPYYN---------KPSQEGIVAHFK 116 (281)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHHHHHHHHHHHcCCCEEEEC--CCcCC---------CCCHHHHHHHHH
Confidence 4555555555554432 579999996 5677888999999999999999874 23321 134466778888
Q ss_pred HHhhccCccEEEEECCCCCC---hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 212 WINAKATVPVWAKMTPNITD---ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
.|.+.+++|+++--.|..+. ..++.+++.+ ...|+.+=- ..+.
T Consensus 117 ~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~--~~~v~giK~----------------------s~~d---------- 162 (281)
T cd00408 117 AVADASDLPVILYNIPGRTGVDLSPETIARLAE--HPNIVGIKD----------------------SSGD---------- 162 (281)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHhc--CCCEEEEEe----------------------CCCC----------
Confidence 88888899999987775431 3455666654 233322200 0011
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~ 352 (422)
+..+.++++..++ ++.|+. |. -..+...+..|+++...+++-+. |..+.++.+
T Consensus 163 ~~~~~~~~~~~~~-----~~~v~~-G~---d~~~~~~l~~G~~G~i~~~~n~~--p~~~~~~~~ 215 (281)
T cd00408 163 LDRLTRLIALLGP-----DFAVLS-GD---DDLLLPALALGADGAISGAANVA--PKLAVALYE 215 (281)
T ss_pred HHHHHHHHHhcCC-----CeEEEE-cc---hHHHHHHHHcCCCEEEehHHhhC--HHHHHHHHH
Confidence 2334445554432 454443 32 56778889999999998876553 455444443
No 233
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.68 E-value=0.0028 Score=60.73 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=88.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH-hhccCccEEEE------
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI-NAKATVPVWAK------ 224 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v-r~~~~iPv~vK------ 224 (422)
+-+++++|... +-++.+-++||+.+-++-..-.. -.-+++.++++.+.. .+..-+-|=+|
T Consensus 77 ~~v~vGGGIr~----e~v~~~l~aGa~rVvIGS~av~~---------~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 77 GGLQVGGGIND----TNAQEWLDEGASHVIVTSWLFTK---------GKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred CCEEEeCCcCH----HHHHHHHHcCCCEEEECcHHHhC---------CCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 44556656543 33455556899999988421000 002367788888776 33221111122
Q ss_pred ----ECCCC--C--ChH-HHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHH
Q 014581 225 ----MTPNI--T--DIT-EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSI 295 (422)
Q Consensus 225 ----l~~~~--~--~~~-~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i 295 (422)
+.... + ++. ++++.+.+. +..|.+++- |-| |-+.|+. ++.++++
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI-------~rD--------------Gtl~G~d-----lel~~~l 196 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAA-------DVE--------------GLCKGID-----EELVSKL 196 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeee-------ccc--------------CccccCC-----HHHHHHH
Confidence 22211 1 355 788888888 888877742 211 2234432 5667777
Q ss_pred HHHhhccCCCCCceEEEecCCCCHHHHHHHHHh--CCCEEEEhhHHHhh
Q 014581 296 AKMMKSEFNDKDYSLSGIGGVETGGDAAEFILL--GANTVQVCTGVMMH 342 (422)
Q Consensus 296 ~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~a--GAd~V~vgtall~~ 342 (422)
++.. ++|||++|||.+.+|+.+.-.. |...+-+|++++..
T Consensus 197 ~~~~-------~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f 238 (253)
T TIGR02129 197 GEWS-------PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIF 238 (253)
T ss_pred HhhC-------CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHh
Confidence 7765 8999999999999999998544 55568888888754
No 234
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.015 Score=56.35 Aligned_cols=207 Identities=14% Similarity=0.166 Sum_probs=123.6
Q ss_pred CCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
.|+.+.. ++ ++-..+-+.++||-++-+.+... ..++|++..+..+ .++++
T Consensus 18 ~~~~~pg-~~--d~~sA~la~~aGF~al~~sg~~v------------------------A~slG~pD~~~~t---~~e~~ 67 (289)
T COG2513 18 DPLVLPG-AW--DAGSALLAERAGFKALYLSGAGV------------------------AASLGLPDLGITT---LDEVL 67 (289)
T ss_pred CCEEecC-Cc--CHHHHHHHHHcCCeEEEeccHHH------------------------HHhcCCCcccccc---HHHHH
Confidence 3555444 43 35556667788998887665432 2256666666433 78999
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEcc-C----CCCCCCccccccccccChhHHHHHHH
Q 014581 138 KEFKQLKALYPDKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNF-S----CPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~-s----cP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
..++++.+.. +.||++-+-.|+ ++....+.++.++++|+.++.|-= . |-|.. |..+- +.+...+-++
T Consensus 68 ~~vrrI~~a~-~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~-----gk~l~-~~~e~v~rIk 140 (289)
T COG2513 68 ADARRITDAV-DLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLP-----GKELV-SIDEMVDRIK 140 (289)
T ss_pred HHHHHHHhhc-CCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCC-----CCCcC-CHHHHHHHHH
Confidence 9999888764 899999996554 355667888999999999987741 1 32321 12222 2333333333
Q ss_pred HHhhcc-CccEEEEECC------CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 212 WINAKA-TVPVWAKMTP------NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 212 ~vr~~~-~iPv~vKl~~------~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
++++.. +.++++=-+. .+++..+=+++..++|+|+|......
T Consensus 141 Aa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~------------------------------- 189 (289)
T COG2513 141 AAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT------------------------------- 189 (289)
T ss_pred HHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC-------------------------------
Confidence 444443 3344332221 12344556777899999998433210
Q ss_pred chhHHHHHHHHHHHhhccCCCCCceEE---EecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 285 HPIALGKVMSIAKMMKSEFNDKDYSLS---GIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 285 ~p~al~~v~~i~~~~~~~~~~~~ipII---a~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+.+.++++++++ ++|+- -..|-+-.-++.+.-.+|.+.|..+-..+.-
T Consensus 190 ---~~e~i~~f~~av-------~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~~ra 240 (289)
T COG2513 190 ---DLEEIRAFAEAV-------PVPLPANITEFGKTPLLTVAELAELGVKRVSYGLTAFRA 240 (289)
T ss_pred ---CHHHHHHHHHhc-------CCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcHHHHH
Confidence 135566777776 33332 2344433345566777999999999777664
No 235
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.65 E-value=0.0044 Score=58.07 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
+..+ +..+.+.|+|++.+.--+.. .+ ++ +.. .+..++.+.++.+... ++||
T Consensus 111 ~~~e-~~~A~~~gaDYi~lgpvf~T------~t-K~----------~~~-----~~~G~~~l~~~~~~~~------~~PV 161 (211)
T PRK03512 111 DDME-IDVALAARPSYIALGHVFPT------QT-KQ----------MPS-----APQGLAQLARHVERLA------DYPT 161 (211)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCC------CC-CC----------CCC-----CCCCHHHHHHHHHhcC------CCCE
Confidence 3444 56677899999976643321 01 11 111 1233455555555431 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++.|||. .+++.+.+.+||++|-+.++++..
T Consensus 162 ~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~~ 192 (211)
T PRK03512 162 VAIGGIS-LERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred EEECCCC-HHHHHHHHHcCCCEEEEhhHhhCC
Confidence 9999996 999999999999999999999865
No 236
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.64 E-value=0.00085 Score=64.38 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=76.2
Q ss_pred HHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEEC---CCCCC---hHHHHHHHHHc
Q 014581 169 IDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT---PNITD---ITEPARVALRS 242 (422)
Q Consensus 169 a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~---~~~~~---~~~~a~~l~~a 242 (422)
++.+.+.|||-|++=+.. |.-...+.+.+.+-+++|++.++-++.+|+- +.+++ +...++.+.++
T Consensus 89 a~~Ai~~GAdEiD~Vini---------g~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~a 159 (257)
T PRK05283 89 TRAAIAYGADEVDVVFPY---------RALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKA 159 (257)
T ss_pred HHHHHHcCCCEEeeeccH---------HHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHh
Confidence 444556699988864321 2222346677777778887765424666653 33443 34577788999
Q ss_pred CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHH
Q 014581 243 GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDA 322 (422)
Q Consensus 243 Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da 322 (422)
|+|+|.-+..+.. +| .+.+.|+.+++.+++.--..++-|=++|||+|.+++
T Consensus 160 GADFVKTSTGf~~---------------------~g--------At~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A 210 (257)
T PRK05283 160 GADFIKTSTGKVP---------------------VN--------ATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDA 210 (257)
T ss_pred CCCEEEcCCCCCC---------------------CC--------CCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHH
Confidence 9999964322210 11 123344445555421000016889999999999999
Q ss_pred HHHHHhCCC
Q 014581 323 AEFILLGAN 331 (422)
Q Consensus 323 ~~~l~aGAd 331 (422)
.+++.+|.+
T Consensus 211 ~~~i~ag~~ 219 (257)
T PRK05283 211 AQYLALADE 219 (257)
T ss_pred HHHHHHHHH
Confidence 999999854
No 237
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.0016 Score=62.25 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~ 346 (422)
+....++...+++ +..+|+-.||.+++|+.++...||+++-||+++|.+ ++.
T Consensus 194 l~~t~~la~~~p~-----~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~-~~~ 245 (254)
T COG0134 194 LETTEKLAPLIPK-----DVILISESGISTPEDVRRLAKAGADAFLVGEALMRA-DDP 245 (254)
T ss_pred HHHHHHHHhhCCC-----CcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC-CCH
Confidence 4555667777764 688999999999999999999999999999999998 443
No 238
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.63 E-value=0.012 Score=57.72 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhhCCC-CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPD-KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~-~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.+.+...++.+.+++ + .||.+.+--+.+. +.++++.+.|++.|.+.-+.-. +....+..+++++
T Consensus 58 ~~~~~~~~~~~a~~~-~~vpv~lhlDH~~~~----e~i~~ai~~Gf~sVmid~s~l~----------~~eni~~t~~v~~ 122 (282)
T TIGR01859 58 YKMAVAMVKTLIERM-SIVPVALHLDHGSSY----ESCIKAIKAGFSSVMIDGSHLP----------FEENLALTKKVVE 122 (282)
T ss_pred HHHHHHHHHHHHHHC-CCCeEEEECCCCCCH----HHHHHHHHcCCCEEEECCCCCC----------HHHHHHHHHHHHH
Confidence 344555566666655 5 8999998533333 3445555679999998865321 1122334444444
Q ss_pred HHhhccCccEEEEECC-------------CCCChHHHHHHHHHcCCCEEEEe-cCCcccccccccCCCCCCCCCCCCccC
Q 014581 212 WINAKATVPVWAKMTP-------------NITDITEPARVALRSGSEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~-------------~~~~~~~~a~~l~~aGadgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
..+. .+++|-..+.. .++++.+..+...+.|+|.+.+. ++..+.
T Consensus 123 ~a~~-~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~--------------------- 180 (282)
T TIGR01859 123 IAHA-KGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGK--------------------- 180 (282)
T ss_pred HHHH-cCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccc---------------------
Confidence 3333 25566555432 12345554444445999999874 544321
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEec--CCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIG--GVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~G--GI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+.+. .++.++.++++++.+ ++|+++-| ||. .+++.+++.+|++.|-++|.+...
T Consensus 181 -~~~~--~~l~~e~L~~i~~~~-------~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiNv~T~l~~a 236 (282)
T TIGR01859 181 -YKGE--PGLDFERLKEIKELT-------NIPLVLHGASGIP-EEQIKKAIKLGIAKINIDTDCRIA 236 (282)
T ss_pred -cCCC--CccCHHHHHHHHHHh-------CCCEEEECCCCCC-HHHHHHHHHcCCCEEEECcHHHHH
Confidence 0110 123467788888876 79999999 996 788999999999999999998754
No 239
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=97.63 E-value=0.023 Score=55.69 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhhC-CCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALY-PDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~-~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+.. .+.||++.+. +.+.++..+.++.+++.|+|++-+- .|... ..+.+.+.+..+
T Consensus 53 ~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~i~~a~~a~~~Gad~v~v~--~P~~~---------~~s~~~l~~y~~ 120 (289)
T PF00701_consen 53 DEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEAIELARHAQDAGADAVLVI--PPYYF---------KPSQEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHHHHHHHHHHHTT-SEEEEE--ESTSS---------SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCceEEEecCc-chhHHHHHHHHHHHhhcCceEEEEe--ccccc---------cchhhHHHHHHH
Confidence 455555555444432 2579999997 5678889999999999999999874 24421 134566778888
Q ss_pred HHhhccCccEEEEECCC---CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 212 WINAKATVPVWAKMTPN---ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~---~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
.|.+.+++|+++--.|. ..-..+...++.+. ..|+.+= | ..+.
T Consensus 121 ~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~--~nv~giK--------~--------------s~~~---------- 166 (289)
T PF00701_consen 121 AIADATDLPIIIYNNPARTGNDLSPETLARLAKI--PNVVGIK--------D--------------SSGD---------- 166 (289)
T ss_dssp HHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTS--TTEEEEE--------E--------------SSSB----------
T ss_pred HHHhhcCCCEEEEECCCccccCCCHHHHHHHhcC--CcEEEEE--------c--------------Cchh----------
Confidence 88888899999987662 22234555555552 2332210 0 0010
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
+..+.++.+...+ ++.|+ +| +-+.+...+.+|++++..+.+.+. |..+.++.+.
T Consensus 167 ~~~~~~~~~~~~~-----~~~v~-~G---~d~~~~~~l~~G~~G~is~~~n~~--P~~~~~i~~~ 220 (289)
T PF00701_consen 167 LERLIQLLRAVGP-----DFSVF-CG---DDELLLPALAAGADGFISGLANVF--PELIVEIYDA 220 (289)
T ss_dssp HHHHHHHHHHSST-----TSEEE-ES---SGGGHHHHHHTTSSEEEESGGGTH--HHHHHHHHHH
T ss_pred HHHHHHHhhhccc-----Ceeee-cc---ccccccccccccCCEEEEcccccC--hHHHHHHHHH
Confidence 1223344444432 55544 33 344578899999999999988654 4554444433
No 240
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.62 E-value=0.0011 Score=66.00 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=35.6
Q ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHH
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~ 346 (422)
++-+|+-+||.+++|+..+..+|||+|-||+++|.. ++.
T Consensus 288 ~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~-~dp 326 (338)
T PLN02460 288 GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ-DDP 326 (338)
T ss_pred CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC-CCH
Confidence 677899999999999999999999999999999997 443
No 241
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.62 E-value=0.00055 Score=65.08 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=70.0
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.+.|+.+.+.|++.+.+.+- +..+ + ++..++.++++.+.. -.|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDL---------d~a~-----------~-------~~~n~~~i~~i~~~~-------~~~ 75 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDL---------DAAE-----------G-------VGNNEMYIKEISKIG-------FDW 75 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEC---------CCcC-----------C-------CcchHHHHHHHHhhC-------CCC
Confidence 37889999999999999987742 2110 0 022246677777643 259
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
+-..|||+|.+|+.+++.+||+-|.++|..+.+ |.+++++.+..
T Consensus 76 v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~-p~~~~~~~~~~ 119 (232)
T PRK13586 76 IQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN-FNLFHDIVREI 119 (232)
T ss_pred EEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC-HHHHHHHHHHh
Confidence 999999999999999999999999999999998 88888776654
No 242
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=97.61 E-value=0.056 Score=53.07 Aligned_cols=162 Identities=11% Similarity=-0.005 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhhC-CCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALY-PDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~-~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+.. .+.||+++++ . +.++..+.++.++++|+|++-+ ..|... ..+.+.+.+..+
T Consensus 52 ~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~--~pP~y~---------~~~~~~i~~~f~ 118 (289)
T cd00951 52 PDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILL--LPPYLT---------EAPQEGLYAHVE 118 (289)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEE--CCCCCC---------CCCHHHHHHHHH
Confidence 456666666555443 2579999996 4 7788899999999999999976 233321 124567788888
Q ss_pred HHhhccCccEEEEECCCCCChHHHHHHHHH-cC-CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 212 WINAKATVPVWAKMTPNITDITEPARVALR-SG-SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~-aG-adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
.|.+.+++||++--.+...-..++.+++.+ .. +-+|.-+ .+. +
T Consensus 119 ~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiKds-------------------------~~d----------~ 163 (289)
T cd00951 119 AVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKDG-------------------------VGD----------I 163 (289)
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEEeC-------------------------CCC----------H
Confidence 888888999999765544333556666654 32 2222110 011 1
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHH-HHHHHHhCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGD-AAEFILLGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~d-a~~~l~aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
..+.++.+..++ ++.|+ + |-.+.++ +...+.+||+++..+.+-+. |..+.++.
T Consensus 164 ~~~~~~~~~~~~-----~~~v~-~-G~~~~d~~~~~~l~~Ga~G~is~~~n~~--P~~~~~l~ 217 (289)
T cd00951 164 ELMRRIVAKLGD-----RLLYL-G-GLPTAEVFALAYLAMGVPTYSSAVFNFV--PEIALAFY 217 (289)
T ss_pred HHHHHHHHhcCC-----CeEEE-e-CCCcchHhHHHHHHCCCCEEEechhhhh--HHHHHHHH
Confidence 234445554432 34333 2 3332333 67888999999988776553 45444443
No 243
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.60 E-value=0.0018 Score=70.48 Aligned_cols=172 Identities=20% Similarity=0.175 Sum_probs=95.0
Q ss_pred CeEEEEeCCCCCH--------HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccE
Q 014581 150 KILIASIMEEYNK--------AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221 (422)
Q Consensus 150 ~pvi~si~~~~~~--------~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv 221 (422)
.+||+=+.. .+| -+-.++|+..++.||++|-+.. ++ +.+++ +.+. ++.+|+.+++||
T Consensus 50 ~~vIaEiKr-aSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlT-----e~-~~F~G----s~~~----l~~vr~~v~~Pv 114 (695)
T PRK13802 50 IPVIAEIKR-ASPSKGHLSDIPDPAALAREYEQGGASAISVLT-----EG-RRFLG----SLDD----FDKVRAAVHIPV 114 (695)
T ss_pred CeEEEEeec-CCCCCCcCCCCCCHHHHHHHHHHcCCcEEEEec-----Cc-CcCCC----CHHH----HHHHHHhCCCCE
Confidence 467776642 111 1446788888899999998763 11 12232 3333 444556679999
Q ss_pred EEEECCCCCChHHHHHHHHHcCCCEEEEecCCccc------------cccc--cc--CCCCC-CCCC-CCCccCCCCCCC
Q 014581 222 WAKMTPNITDITEPARVALRSGSEGVSAINTIMSV------------MGID--LK--TLRPE-PCVE-GYSTPGGYSCKA 283 (422)
Q Consensus 222 ~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~------------~~id--~e--~~~p~-~~~~-~~~~~gG~sG~~ 283 (422)
..| -++-|..++ ..+...|||+|.++-..... .+++ +| +.+.. .... + ...=|+.-..
T Consensus 115 LrK--DFIid~~QI-~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~g-a~iiGINnRd 190 (695)
T PRK13802 115 LRK--DFIVTDYQI-WEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAG-AKVIGINARN 190 (695)
T ss_pred Eec--cccCCHHHH-HHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCC-CCEEEEeCCC
Confidence 998 222232322 23445566666554332110 0000 00 00000 0000 0 0000011111
Q ss_pred cc--hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHH
Q 014581 284 VH--PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGL 346 (422)
Q Consensus 284 i~--p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~ 346 (422)
++ ...+....+++..+++ ++.+|+-+||.+++|+..+..+|||+|-||+++|.. ++.
T Consensus 191 L~tf~vd~~~t~~L~~~ip~-----~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~-~dp 249 (695)
T PRK13802 191 LKDLKVDVNKYNELAADLPD-----DVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA-DDH 249 (695)
T ss_pred CccceeCHHHHHHHHhhCCC-----CcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC-CCH
Confidence 11 2234555667777754 788999999999999999999999999999999997 543
No 244
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.56 E-value=0.00019 Score=67.32 Aligned_cols=56 Identities=25% Similarity=0.227 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
.+.++++++.+. ++||+..|||+|++++.+++.+|||.|.+||+++.+ |..++++.
T Consensus 163 ~e~I~~v~~~~~------~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~-p~~~~~~v 218 (219)
T cd02812 163 PEVVRAVKKVLG------DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED-PNAALETV 218 (219)
T ss_pred HHHHHHHHHhcC------CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC-HHHHHHHh
Confidence 466777877642 689999999999999999999999999999999988 77776653
No 245
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.55 E-value=0.00022 Score=67.24 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=38.0
Q ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
++|+|..|||+|.+++.+++.+|||.|.+|+++..+ ++ ++++.+.+
T Consensus 182 ~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~-~~-~e~~~~~i 227 (230)
T PF01884_consen 182 DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED-PD-LEEALETI 227 (230)
T ss_dssp SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH-H--HHHHHTHH
T ss_pred CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc-ch-HHHHHHHH
Confidence 899999999999999999999999999999999988 44 55555544
No 246
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.54 E-value=0.0005 Score=65.45 Aligned_cols=89 Identities=20% Similarity=0.144 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+.+.+.|++.+.+.+-. .. . | ++..+..++++.+.+ .+|
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd---------~~-----------~-~------~~~n~~~i~~i~~~~-------~~~ 80 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLD---------AI-----------M-G------RGDNDEAIRELAAAW-------PLG 80 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCc---------cc-----------c-C------CCccHHHHHHHHHhC-------CCC
Confidence 378999999999999999877521 10 0 1 123356777787765 699
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
+...|||++.+|+.+++.+||+-|.++|..+.+ .+++++.+.+
T Consensus 81 v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~--~~~~~~~~~~ 123 (233)
T cd04723 81 LWVDGGIRSLENAQEWLKRGASRVIVGTETLPS--DDDEDRLAAL 123 (233)
T ss_pred EEEecCcCCHHHHHHHHHcCCCeEEEcceeccc--hHHHHHHHhc
Confidence 999999999999999999999999999999876 6666655544
No 247
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0022 Score=58.17 Aligned_cols=182 Identities=14% Similarity=0.143 Sum_probs=102.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccC----CCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFS----CPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP 227 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~s----cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~ 227 (422)
|..||- ..+-..+.+-++++.++|+|.+-+++- -||- .+| --+++.+|+.+..|-+.-+-.
T Consensus 7 I~PSIL-~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNi----T~G----------~pvV~slR~~~~~~~ffD~Hm 71 (224)
T KOG3111|consen 7 IAPSIL-SSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNI----TFG----------PPVVESLRKHTGADPFFDVHM 71 (224)
T ss_pred echhhh-ccchHHHHHHHHHHHHcCCCeEEEeeecccccCCc----ccc----------hHHHHHHHhccCCCcceeEEE
Confidence 444553 223333444456777899999999863 3432 122 125667777665553333222
Q ss_pred CCCChHHHHHHHHHcCCCEEEEecCCcc--------------cccccccCCC------CCCC----CCCCCccCCCCCCC
Q 014581 228 NITDITEPARVALRSGSEGVSAINTIMS--------------VMGIDLKTLR------PEPC----VEGYSTPGGYSCKA 283 (422)
Q Consensus 228 ~~~~~~~~a~~l~~aGadgi~v~n~~~~--------------~~~id~e~~~------p~~~----~~~~~~~gG~sG~~ 283 (422)
-+.++.+.+....++||+.++.+--..+ ..++.++-.+ +... +...+..-|+.|..
T Consensus 72 MV~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQk 151 (224)
T KOG3111|consen 72 MVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQK 151 (224)
T ss_pred eecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhh
Confidence 2345566666677777777665521100 0011111000 1000 00011223444544
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhh-h-HHHHHHHHHHH
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHG-Y-GLVKRLCEELK 355 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~G-p-~~i~~i~~~l~ 355 (422)
.-+-.+..|+.+|+..+ ++.|=..||+. ++.+-++..|||+.+..||+++..+ | .+++.|.+..+
T Consensus 152 Fme~mm~KV~~lR~kyp------~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 152 FMEDMMPKVEWLREKYP------NLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVE 218 (224)
T ss_pred hHHHHHHHHHHHHHhCC------CceEEecCCcC-cchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHh
Confidence 44556667777776653 67788999996 8999999999999999999998752 2 34555555543
No 248
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.52 E-value=0.00083 Score=64.23 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+...+.|++.+.+.. ++.. ..| ++.-++.|+++++.+ +|
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivD---------Ld~a--------------~~g---~~~n~~~i~~i~~~~--------~~ 75 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVD---------LSKA--------------IEN---SVENLPVLEKLSEFA--------EH 75 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE---------CCCc--------------ccC---CcchHHHHHHHHhhc--------Cc
Confidence 4789999999999999998774 2210 011 133456777777753 58
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRL 350 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i 350 (422)
|-..|||+|.+|+.+++.+||+-|.++|..+.+ |.+++++
T Consensus 76 v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~-p~~l~~~ 115 (241)
T PRK14114 76 IQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED-PSFLKFL 115 (241)
T ss_pred EEEecCCCCHHHHHHHHHCCCCEEEECchhhCC-HHHHHHH
Confidence 999999999999999999999999999999998 8888777
No 249
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.0057 Score=56.73 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=100.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCC
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNI 229 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~ 229 (422)
.|++.=|. ..++++-..+++.+.+.|++.|||-+.+|.. .+.++.+++... -+++- ..++
T Consensus 13 ~~vI~Vlr-~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a-----------------~e~I~~l~~~~p-~~lIG-AGTV 72 (211)
T COG0800 13 QPVVPVIR-GDDVEEALPLAKALIEGGIPAIEITLRTPAA-----------------LEAIRALAKEFP-EALIG-AGTV 72 (211)
T ss_pred CCeeEEEE-eCCHHHHHHHHHHHHHcCCCeEEEecCCCCH-----------------HHHHHHHHHhCc-ccEEc-cccc
Confidence 46776665 5678999999999999999999999877762 234455544332 12221 1233
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCC-CCCCCCCC-----ccCCCCCCCcchhHHH-HHHHHHHHhhcc
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRP-EPCVEGYS-----TPGGYSCKAVHPIALG-KVMSIAKMMKSE 302 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p-~~~~~~~~-----~~gG~sG~~i~p~al~-~v~~i~~~~~~~ 302 (422)
-+ .+-++.+.++|+++++--|........-.+..-| .|+...-+ ..-|++.-.++|-..- -. .+.+.+.+-
T Consensus 73 L~-~~q~~~a~~aGa~fiVsP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~-~~~ka~~gP 150 (211)
T COG0800 73 LN-PEQARQAIAAGAQFIVSPGLNPEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGP-AMLKALAGP 150 (211)
T ss_pred cC-HHHHHHHHHcCCCEEECCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCcH-HHHHHHcCC
Confidence 34 3457788899999886433221100000000001 11100000 0012221111221100 00 112223222
Q ss_pred CCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhh---HHHHHHHHHHHHHHHH
Q 014581 303 FNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGY---GLVKRLCEELKDFMKM 360 (422)
Q Consensus 303 ~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp---~~i~~i~~~l~~~m~~ 360 (422)
+ .+++++-+|||+ ...+.+++.+|+.+|.+||.+...+. .-..++.+-.++|++.
T Consensus 151 ~--~~v~~~pTGGVs-~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~~~~~ 208 (211)
T COG0800 151 F--PQVRFCPTGGVS-LDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELAREAVAL 208 (211)
T ss_pred C--CCCeEeecCCCC-HHHHHHHHhCCceEEecCccccChhhhhcccHHHHHHHHHHHHHH
Confidence 2 379999999996 77999999999999999998885321 1134444445555553
No 250
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.48 E-value=0.0039 Score=57.65 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=89.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCC
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNI 229 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~ 229 (422)
++++=+. ..+.++..++++.+.+.|...+|+-+..|+. .+.++.+++.. ++-|.+ .++
T Consensus 9 ~iiaVir-~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a-----------------~~~I~~l~~~~p~~~vGA---GTV 67 (196)
T PF01081_consen 9 KIIAVIR-GDDPEDAVPIAEALIEGGIRAIEITLRTPNA-----------------LEAIEALRKEFPDLLVGA---GTV 67 (196)
T ss_dssp SEEEEET-TSSGGGHHHHHHHHHHTT--EEEEETTSTTH-----------------HHHHHHHHHHHTTSEEEE---ES-
T ss_pred CEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEecCCccH-----------------HHHHHHHHHHCCCCeeEE---Eec
Confidence 5777775 5678889999999999999999999876652 23445454433 333333 334
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.+ .+-++.+.++|+++++--+ +| | +.++..++. ++|
T Consensus 68 ~~-~e~a~~a~~aGA~FivSP~-------~~-------------------------~---~v~~~~~~~--------~i~ 103 (196)
T PF01081_consen 68 LT-AEQAEAAIAAGAQFIVSPG-------FD-------------------------P---EVIEYAREY--------GIP 103 (196)
T ss_dssp -S-HHHHHHHHHHT-SEEEESS----------------------------------H---HHHHHHHHH--------TSE
T ss_pred cC-HHHHHHHHHcCCCEEECCC-------CC-------------------------H---HHHHHHHHc--------CCc
Confidence 34 5678999999999885222 11 1 223333332 555
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~ 352 (422)
++ =|+.|+.++.+++.+||+.|-+.=+-...||.+++.+..
T Consensus 104 ~i--PG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~ 144 (196)
T PF01081_consen 104 YI--PGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRG 144 (196)
T ss_dssp EE--EEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHT
T ss_pred cc--CCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhc
Confidence 54 589999999999999999999998887778998887653
No 251
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.47 E-value=0.0072 Score=59.98 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=104.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTP 227 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~ 227 (422)
..|+.+++. ..+++++.+.++.+.+.|++++.++++. +++...+.++++|+.. +.++.++.+.
T Consensus 123 ~~~~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~---------------~~~~d~~~v~~lr~~~g~~~l~vD~n~ 186 (316)
T cd03319 123 PLETDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGG---------------DLEDDIERIRAIREAAPDARLRVDANQ 186 (316)
T ss_pred CceeEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCC---------------ChhhHHHHHHHHHHhCCCCeEEEeCCC
Confidence 356777775 4577888888887778899999999742 1233456677777765 5788888876
Q ss_pred CCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCC
Q 014581 228 NIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFND 305 (422)
Q Consensus 228 ~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~ 305 (422)
.++ +..++++.+.+.+++.|. +|.+ +..++.++++++..
T Consensus 187 ~~~~~~A~~~~~~l~~~~l~~iE----------------eP~~-----------------~~d~~~~~~L~~~~------ 227 (316)
T cd03319 187 GWTPEEAVELLRELAELGVELIE----------------QPVP-----------------AGDDDGLAYLRDKS------ 227 (316)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEE----------------CCCC-----------------CCCHHHHHHHHhcC------
Confidence 554 346677778887776661 1211 11134455676654
Q ss_pred CCceEEEecCCCCHHHHHHHHH-hCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCC
Q 014581 306 KDYSLSGIGGVETGGDAAEFIL-LGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFS 364 (422)
Q Consensus 306 ~~ipIIa~GGI~s~~da~~~l~-aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~ 364 (422)
++||++++.+.+.+++.+++. .++|.||+-.... .|..-..++ .++.+++|+.
T Consensus 228 -~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~-GGi~~~~~~----~~~a~~~gi~ 281 (316)
T cd03319 228 -PLPIMADESCFSAADAARLAGGGAYDGINIKLMKT-GGLTEALRI----ADLARAAGLK 281 (316)
T ss_pred -CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecccc-CCHHHHHHH----HHHHHHcCCC
Confidence 799999999999999999998 5689999875543 234333333 3445666654
No 252
>PRK06801 hypothetical protein; Provisional
Probab=97.46 E-value=0.025 Score=55.47 Aligned_cols=163 Identities=19% Similarity=0.222 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+++ +.||.+.+--+.+.+ .++++.++|++.|.+.-|.- .++.+.+..+++++.
T Consensus 59 ~~~~~~~~~~~a~~~-~vpV~lHlDH~~~~e----~i~~Ai~~GftSVm~D~S~l----------~~eeNi~~t~~v~~~ 123 (286)
T PRK06801 59 LESLVEAVKFEAARH-DIPVVLNLDHGLHFE----AVVRALRLGFSSVMFDGSTL----------EYEENVRQTREVVKM 123 (286)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEECCCCCCHH----HHHHHHHhCCcEEEEcCCCC----------CHHHHHHHHHHHHHH
Confidence 556666666666555 789999996444433 34555567999999975421 112334455555554
Q ss_pred HhhccCccEEEEEC------------C----CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCcc
Q 014581 213 INAKATVPVWAKMT------------P----NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTP 276 (422)
Q Consensus 213 vr~~~~iPv~vKl~------------~----~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~ 276 (422)
.+.. .++|-.-+. . .++++.+..+...+.|+|.+.+.- +. ..
T Consensus 124 a~~~-gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvai--Gt-------------------~H 181 (286)
T PRK06801 124 CHAV-GVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAI--GN-------------------AH 181 (286)
T ss_pred HHHc-CCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEecc--CC-------------------CC
Confidence 4332 444422211 0 133445545555589999987732 11 11
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecC--CCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGG--VETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 277 gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GG--I~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
|-+.+.+ ++.++.++++++.+ ++|++.-|| |. .+++.+++.+|++-|-++|.+...
T Consensus 182 g~y~~~~--~l~~e~l~~i~~~~-------~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~a 239 (286)
T PRK06801 182 GKYKGEP--KLDFARLAAIHQQT-------GLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQA 239 (286)
T ss_pred CCCCCCC--CCCHHHHHHHHHhc-------CCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHHH
Confidence 2222211 34567778888776 789999999 86 788999999999999999998764
No 253
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=97.46 E-value=0.0028 Score=63.91 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=95.2
Q ss_pred CCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEE
Q 014581 149 DKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKM 225 (422)
Q Consensus 149 ~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl 225 (422)
..|+.+++.... +++++.+.++++.+.|++.+++.++..... .++++...++++++|+.+ +.++.+..
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~---------~~~~~~d~~~v~~ir~~~g~~~~l~vDa 196 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG---------GEDLREDLARVRAVREAVGPDVDLMVDA 196 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc---------hHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 356777765322 588888888888889999999997643210 033566677888888876 67899988
Q ss_pred CCCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccC
Q 014581 226 TPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEF 303 (422)
Q Consensus 226 ~~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~ 303 (422)
+..++ +..++++.+.+.+++.+. +|.+ +..++..+++++..
T Consensus 197 N~~~~~~~a~~~~~~l~~~~i~~iE----------------qP~~-----------------~~~~~~~~~l~~~~---- 239 (357)
T cd03316 197 NGRWDLAEAIRLARALEEYDLFWFE----------------EPVP-----------------PDDLEGLARLRQAT---- 239 (357)
T ss_pred CCCCCHHHHHHHHHHhCccCCCeEc----------------CCCC-----------------ccCHHHHHHHHHhC----
Confidence 66553 344555666555554431 2221 11234455666664
Q ss_pred CCCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhh
Q 014581 304 NDKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCT 337 (422)
Q Consensus 304 ~~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgt 337 (422)
++||++...+.+.+|+.+++..| +|.|++--
T Consensus 240 ---~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~ 271 (357)
T cd03316 240 ---SVPIAAGENLYTRWEFRDLLEAGAVDIIQPDV 271 (357)
T ss_pred ---CCCEEeccccccHHHHHHHHHhCCCCEEecCc
Confidence 79999999999999999999865 88888753
No 254
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=97.46 E-value=0.066 Score=52.38 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... +.||++.+. ..+.++..+.++.+++.|+|++-+- .|.. +..+.+.+.+..+
T Consensus 50 ~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~~i~~a~~a~~~Gad~v~v~--pP~y---------~~~~~~~i~~~~~ 117 (285)
T TIGR00674 50 HEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEEAISLTKFAEDVGADGFLVV--TPYY---------NKPTQEGLYQHFK 117 (285)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHHHHHHHHHHHHcCCCEEEEc--CCcC---------CCCCHHHHHHHHH
Confidence 4555555555544332 479999996 5677888999999999999999864 2332 1124467778888
Q ss_pred HHhhccCccEEEEECCCCC---ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 212 WINAKATVPVWAKMTPNIT---DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~---~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
.|.+.+++||++--.|..+ -..++.+++.+.. .|+.+= | ..+.
T Consensus 118 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~--~v~giK--------~--------------s~~d---------- 163 (285)
T TIGR00674 118 AIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEP--NIVAIK--------E--------------ATGN---------- 163 (285)
T ss_pred HHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCC--CEEEEE--------e--------------CCCC----------
Confidence 8888889999987666422 1345555665443 222110 0 0011
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
+..+.++++..++ ++.|+... -......+.+||++...+.+.+.
T Consensus 164 ~~~~~~l~~~~~~-----~~~v~~G~----d~~~~~~~~~G~~G~i~~~~~~~ 207 (285)
T TIGR00674 164 LERISEIKAIAPD-----DFVVLSGD----DALTLPMMALGGKGVISVTANVA 207 (285)
T ss_pred HHHHHHHHHhcCC-----CeEEEECc----hHHHHHHHHcCCCEEEehHHHhh
Confidence 1234445544432 45544432 24567788999999998877543
No 255
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.45 E-value=0.00096 Score=64.18 Aligned_cols=87 Identities=22% Similarity=0.201 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.++|+...+.|++.+.++. ++. |. +.-.+.++++++ + ++|
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVD---------Ldg-----------------g~---~~n~~~i~~i~~-~-------~~~ 85 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIM---------LGA-----------------DD---ASLAAALEALRA-Y-------PGG 85 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE---------CCC-----------------CC---cccHHHHHHHHh-C-------CCC
Confidence 4789999999999999998774 211 10 222567777877 5 689
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh---hhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMH---GYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~---Gp~~i~~i~~~l 354 (422)
|-..|||++ +++.+++.+||+-|.++|.++.+ -|.+++++.+..
T Consensus 86 vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 86 LQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLV 132 (262)
T ss_pred EEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHh
Confidence 999999996 99999999999999999999986 266776665543
No 256
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=97.43 E-value=0.012 Score=56.89 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=88.9
Q ss_pred CCeecCCCceecCCCCC-CCHHHHHHHH----H----cCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCccccccc
Q 014581 52 NGLQMPNPFVIGSGPPG-TNYTVMKRAF----D----EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGW 122 (422)
Q Consensus 52 ~Gl~l~nPi~~AAg~~~-~~~~~~~~~~----~----~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl 122 (422)
..+.-..|+.+=|||-+ .+.+.+...+ + .|+. ++.|+.+-++ ||- ....|
T Consensus 9 ~~~~~~~~~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~~-~i~kgsfkKA-------pRT-------------Sp~sF 67 (290)
T PLN03033 9 NQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKLGLP-LVFKSSFDKA-------NRT-------------SSKSF 67 (290)
T ss_pred HhcCCCCCeEEEecCChhcCHHHHHHHHHHHHHHHHhCCCc-EEEEeeccCC-------CCC-------------CCCCC
Confidence 34445677877778865 3444433322 2 2554 5556655432 221 11124
Q ss_pred ccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccC
Q 014581 123 ENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQD 202 (422)
Q Consensus 123 ~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~ 202 (422)
+.+| +++-++.++++|+++ +.||+--|+ ++++. +.+.+. +|.++|-.. +.++
T Consensus 68 rG~G------~eeGL~iL~~vk~~~-glpvvTeV~---~~~q~----~~vae~-~DilQIgAr-------------~~rq 119 (290)
T PLN03033 68 RGPG------MAEGLKILEKVKVAY-DLPIVTDVH---ESSQC----EAVGKV-ADIIQIPAF-------------LCRQ 119 (290)
T ss_pred CCCC------HHHHHHHHHHHHHHH-CCceEEeeC---CHHHH----HHHHhh-CcEEeeCcH-------------HHHH
Confidence 4445 688889999999987 899998886 34442 333343 799987521 1233
Q ss_pred hhHHHHHHHHHhhccCccEEEEECCCC--CChHHHHHHHHHcCCCEEEEecCC
Q 014581 203 CRLLEEVCGWINAKATVPVWAKMTPNI--TDITEPARVALRSGSEGVSAINTI 253 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~~iPv~vKl~~~~--~~~~~~a~~l~~aGadgi~v~n~~ 253 (422)
.+++ +++.+ +++||.+|=..+. .+....++.+...|-+-|.+.-|.
T Consensus 120 tdLL----~a~~~-tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG 167 (290)
T PLN03033 120 TDLL----VAAAK-TGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERG 167 (290)
T ss_pred HHHH----HHHHc-cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 3443 33332 4899999954432 245667788889999989888764
No 257
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.43 E-value=0.0013 Score=62.91 Aligned_cols=89 Identities=11% Similarity=0.000 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
++.+.++...+.|+..+.+.. ++..+ | .+.-.+.|+++.+.+ .+||
T Consensus 32 ~p~~~a~~~~~~g~~~lhivD---------Ld~a~---------------g---~~~n~~~i~~i~~~~-------~~~v 77 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVD---------LDAAF---------------G---GGNNEMMLEEVVKLL-------VVVE 77 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEE---------CCCCC---------------C---CcchHHHHHHHHHHC-------CCCE
Confidence 567888888899998887663 22211 0 122356788888776 6899
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
-..|||+|.+|+.+++.+||+-|.++|..+.+ |.+++++.+..
T Consensus 78 ~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~-p~~~~~~~~~~ 120 (243)
T TIGR01919 78 ELSGGRRDDSSLRAALTGGRARVNGGTAALEN-PWWAAAVIRYG 120 (243)
T ss_pred EEcCCCCCHHHHHHHHHcCCCEEEECchhhCC-HHHHHHHHHHc
Confidence 99999999999999999999999999999988 88888776543
No 258
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=97.43 E-value=0.12 Score=50.82 Aligned_cols=162 Identities=10% Similarity=0.023 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... ..||++.++ . +.++-.+.++.+++.|+|++-+- .|... ..+.+.+.+..+
T Consensus 57 ~eEr~~v~~~~~~~~~g~~pvi~gv~-~-~t~~ai~~a~~a~~~Gadav~~~--pP~y~---------~~s~~~i~~~f~ 123 (296)
T TIGR03249 57 PAEYEQVVEIAVSTAKGKVPVYTGVG-G-NTSDAIEIARLAEKAGADGYLLL--PPYLI---------NGEQEGLYAHVE 123 (296)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEecC-c-cHHHHHHHHHHHHHhCCCEEEEC--CCCCC---------CCCHHHHHHHHH
Confidence 4555555554444332 479999996 4 57788899999999999999762 34321 123466777888
Q ss_pred HHhhccCccEEEEECCCCCChHHHHHHHHH-c-CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 212 WINAKATVPVWAKMTPNITDITEPARVALR-S-GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~-a-Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
.|.+.+++||++--.+...-..++..++.+ . .+.+|.-+ .+. +
T Consensus 124 ~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds-------------------------~~d----------~ 168 (296)
T TIGR03249 124 AVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDG-------------------------IGD----------M 168 (296)
T ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeC-------------------------CCC----------H
Confidence 888888999998654433323555555554 2 23333211 011 2
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHH
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRL 350 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i 350 (422)
..+.++.+..++ ++.|+..-+. .-..+..++.+||+++..+.+-+. |..+.++
T Consensus 169 ~~~~~~~~~~~~-----~~~v~~G~~~-~d~~~~~~~~~Ga~G~is~~~n~~--P~~~~~~ 221 (296)
T TIGR03249 169 EQMIEITQRLGD-----RLGYLGGMPT-AEVTAPAYLPLGVTSYSSAIFNFI--PHIARAF 221 (296)
T ss_pred HHHHHHHHHcCC-----CeEEEeCCCc-chhhHHHHHhCCCCEEEecHHHhh--HHHHHHH
Confidence 233445444432 4544443222 133467778899999998876543 4444333
No 259
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=97.42 E-value=0.12 Score=51.04 Aligned_cols=95 Identities=13% Similarity=-0.035 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... +.||++.++ . +.++..+.++.++++|+|++.+- .|... ..+.+.+.+..+
T Consensus 59 ~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Gadav~~~--pP~y~---------~~~~~~i~~~f~ 125 (303)
T PRK03620 59 PDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGADGILLL--PPYLT---------EAPQEGLAAHVE 125 (303)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCCCEEEEC--CCCCC---------CCCHHHHHHHHH
Confidence 4566666665554332 479999996 5 77888999999999999999763 33321 123567788888
Q ss_pred HHhhccCccEEEEECCCCCChHHHHHHHH
Q 014581 212 WINAKATVPVWAKMTPNITDITEPARVAL 240 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~~~~~a~~l~ 240 (422)
.|.+.+++||++--.+.+.-..+....+.
T Consensus 126 ~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 126 AVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 88888899999976554432345555554
No 260
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.42 E-value=0.0064 Score=63.31 Aligned_cols=170 Identities=16% Similarity=0.193 Sum_probs=102.4
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCc
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~i 219 (422)
++.+++.. +.|+.-.=. -.+.++ +.....+|||+|-|-... -+++.+.++++..++. ..
T Consensus 102 l~~vr~~v-~~PvLrKDF---iid~~Q--I~ea~~~GADavLLI~~~--------------L~~~~l~~l~~~a~~l-Gl 160 (454)
T PRK09427 102 LPIVRAIV-TQPILCKDF---IIDPYQ--IYLARYYGADAILLMLSV--------------LDDEQYRQLAAVAHSL-NM 160 (454)
T ss_pred HHHHHHhC-CCCEEeccc---cCCHHH--HHHHHHcCCCchhHHHHh--------------CCHHHHHHHHHHHHHc-CC
Confidence 34444433 567764322 122222 112334699999776432 1234566676665443 55
Q ss_pred cEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHh
Q 014581 220 PVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMM 299 (422)
Q Consensus 220 Pv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~ 299 (422)
-.+|=+. + .+-++.+.++|++-|-+=|| |++|++ ..+....++...+
T Consensus 161 ~~lvEvh----~-~~El~~al~~~a~iiGiNnR-------dL~t~~---------------------vd~~~~~~l~~~i 207 (454)
T PRK09427 161 GVLTEVS----N-EEELERAIALGAKVIGINNR-------NLRDLS---------------------IDLNRTRELAPLI 207 (454)
T ss_pred cEEEEEC----C-HHHHHHHHhCCCCEEEEeCC-------CCccce---------------------ECHHHHHHHHhhC
Confidence 5555432 3 34566778899987655554 333322 1123444566666
Q ss_pred hccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCCCHHHhh
Q 014581 300 KSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFR 370 (422)
Q Consensus 300 ~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~si~d~~ 370 (422)
++ ++.+|+-+||.+++|+..+ ..|||+|-||+++|.. ++..+.+.+-+..-.+=+|+.+.+|++
T Consensus 208 p~-----~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~-~d~~~~~~~L~~~~vKICGit~~eda~ 271 (454)
T PRK09427 208 PA-----DVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE-DDLELAVRKLILGENKVCGLTRPQDAK 271 (454)
T ss_pred CC-----CcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC-CCHHHHHHHHhccccccCCCCCHHHHH
Confidence 54 7889999999999999996 4589999999999998 554333333222233458999988875
No 261
>PRK08999 hypothetical protein; Provisional
Probab=97.42 E-value=0.0034 Score=62.14 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=53.6
Q ss_pred HHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEec
Q 014581 235 PARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIG 314 (422)
Q Consensus 235 ~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~G 314 (422)
-++.+.+.|+|++.+.--+.. .+ +| + . .|..++.++++++.. ++||+|.|
T Consensus 238 ~~~~a~~~~~dyi~~gpvf~t------~t-k~----------~-~-----~~~g~~~~~~~~~~~-------~~Pv~AiG 287 (312)
T PRK08999 238 ELARAQRLGVDFAVLSPVQPT------AS-HP----------G-A-----APLGWEGFAALIAGV-------PLPVYALG 287 (312)
T ss_pred HHHHHHhcCCCEEEECCCcCC------CC-CC----------C-C-----CCCCHHHHHHHHHhC-------CCCEEEEC
Confidence 366777899999976643321 11 11 1 0 134456667777655 79999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEhhHH
Q 014581 315 GVETGGDAAEFILLGANTVQVCTGV 339 (422)
Q Consensus 315 GI~s~~da~~~l~aGAd~V~vgtal 339 (422)
|| +.+++.+.+.+||++|-+.+++
T Consensus 288 GI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 288 GL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred CC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 99 8999999999999999998875
No 262
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.41 E-value=0.013 Score=56.59 Aligned_cols=98 Identities=22% Similarity=0.234 Sum_probs=66.0
Q ss_pred eEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccc-------cccccc--cChhHHHHHHHHHh-hccCc
Q 014581 151 ILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERK-------MGAAVG--QDCRLLEEVCGWIN-AKATV 219 (422)
Q Consensus 151 pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~-------~G~~l~--~~~~~v~~iv~~vr-~~~~i 219 (422)
.++.-+..|+ +.+...++++.+.+.|+|.|||.+ |.+++..+ .-.++. -+.+.+-++++.+| +..++
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~ 90 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELGI--PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTI 90 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 4777776554 788899999999999999999986 33332221 011111 24455667777787 44688
Q ss_pred cEEEEE--CCCCC-ChHHHHHHHHHcCCCEEEEe
Q 014581 220 PVWAKM--TPNIT-DITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 220 Pv~vKl--~~~~~-~~~~~a~~l~~aGadgi~v~ 250 (422)
|+++-. ++-+. ...++.+.+.++|+||+.+-
T Consensus 91 p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip 124 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP 124 (258)
T ss_pred CEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC
Confidence 987543 22122 46789999999999999874
No 263
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=97.39 E-value=0.0092 Score=56.13 Aligned_cols=164 Identities=18% Similarity=0.138 Sum_probs=94.4
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.++.+++.+|+.+|++-++ -.++..+..- .+.++|+|++.+|..+. .+.+.+.++.+++. +
T Consensus 46 ~i~~lk~~~~~~~v~~DLK-~~Di~~~v~~--~~~~~Gad~vTvH~~a~---------------~~~i~~~~~~~~~~-g 106 (216)
T PRK13306 46 AVRVLRALYPDKIIVADTK-IADAGKILAK--MAFEAGADWVTVICAAH---------------IPTIKAALKVAKEF-N 106 (216)
T ss_pred HHHHHHHHCCCCEEEEEEe-ecCCcHHHHH--HHHHCCCCEEEEeCCCC---------------HHHHHHHHHHHHHc-C
Confidence 4666777667889999997 4555555432 26678999999995332 23456666666543 3
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
.-+.|=+-+.. +.. -++...+.|.+-++++=+ .+.. ..|...-|..+.. +++.
T Consensus 107 ~~~~V~llts~-~~~-~l~~~~~~~~~~~vl~~a------~~~~----------------~~G~v~s~~~~~~---ir~~ 159 (216)
T PRK13306 107 GEIQIELYGNW-TWE-QAQQWRDAGISQVIYHRS------RDAQ----------------LAGVAWGEKDLNK---VKKL 159 (216)
T ss_pred CEEEEEECCCC-CHH-HHHHHHcCChhhhhhhhh------hhhh----------------hcCCCCCHHHHHH---HHHH
Confidence 34555554432 333 344556666654443321 1110 1111111334444 4444
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh-hh-HHHHHHHHHH
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH-GY-GLVKRLCEEL 354 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~-Gp-~~i~~i~~~l 354 (422)
... ++.|...|||+ ++.+.+...+|||.+.+||+++.. .| ..+++|.+++
T Consensus 160 ~~~-----~~~i~V~gGI~-~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i 211 (216)
T PRK13306 160 SDM-----GFKVSVTGGLV-VEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEI 211 (216)
T ss_pred hcC-----CCeEEEcCCCC-HhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHH
Confidence 321 55699999997 555555666799999999998854 12 2344454444
No 264
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=97.38 E-value=0.034 Score=56.29 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
.+++..+.+.++++ +.|++..+. +..+ ++.+.+. +|++.|--. ..++.++++ ++
T Consensus 168 ~e~l~~L~~~~~~~-Gl~~~t~v~---d~~~----~~~l~~~-vd~lkI~s~-------------~~~n~~LL~----~~ 221 (360)
T PRK12595 168 VEGLKILKQVADEY-GLAVISEIV---NPAD----VEVALDY-VDVIQIGAR-------------NMQNFELLK----AA 221 (360)
T ss_pred HHHHHHHHHHHHHc-CCCEEEeeC---CHHH----HHHHHHh-CCeEEECcc-------------cccCHHHHH----HH
Confidence 36677777777766 889999996 3333 3344555 888887521 123334444 33
Q ss_pred hhccCccEEEEECC--CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHH
Q 014581 214 NAKATVPVWAKMTP--NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGK 291 (422)
Q Consensus 214 r~~~~iPv~vKl~~--~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~ 291 (422)
.+ +++||++|-.. ++.++...++.+.+.|..-|++.-+.... + |. .++ ..+.++.
T Consensus 222 a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~--y------p~---------~~~-----~~ldl~~ 278 (360)
T PRK12595 222 GR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRT--Y------EK---------ATR-----NTLDISA 278 (360)
T ss_pred Hc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCC--C------CC---------CCC-----CCcCHHH
Confidence 32 48999999764 34456777778888998767666432110 0 00 000 1234677
Q ss_pred HHHHHHHhhccCCCCCceEEEe----cCCCCHH--HHHHHHHhCCCEEEEhhH
Q 014581 292 VMSIAKMMKSEFNDKDYSLSGI----GGVETGG--DAAEFILLGANTVQVCTG 338 (422)
Q Consensus 292 v~~i~~~~~~~~~~~~ipIIa~----GGI~s~~--da~~~l~aGAd~V~vgta 338 (422)
+..+++.. ++||+.. +|-+... -++.++.+|||++++=+-
T Consensus 279 i~~lk~~~-------~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H 324 (360)
T PRK12595 279 VPILKQET-------HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVH 324 (360)
T ss_pred HHHHHHHh-------CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEec
Confidence 88888765 7898883 3322222 556678899998777543
No 265
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.36 E-value=0.0055 Score=61.50 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=80.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc---------cCc
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK---------ATV 219 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~---------~~i 219 (422)
+.|++.+=|-..+.. ++|..+.+.|.=++ ||-.++ .+...+.++.+|+. ...
T Consensus 37 ~iPivsa~MDtVte~---~mAiama~~Gglgv-ih~~~~---------------~e~q~~~v~~vK~~~~~a~~d~~~~l 97 (352)
T PF00478_consen 37 KIPIVSAPMDTVTES---EMAIAMARLGGLGV-IHRNMS---------------IEEQAEEVKKVKRYYPNASKDEKGRL 97 (352)
T ss_dssp SSSEEE-SSTTTSSH---HHHHHHHHTTSEEE-EESSSC---------------HHHHHHHHHHHHTHHTTHHBHTTSCB
T ss_pred cCceEecCccccchH---HHHHHHHHhcCCce-ecCCCC---------------HHHHHHHHhhhccccccccccccccc
Confidence 689999887433332 34555555554443 443222 22333445555432 134
Q ss_pred cEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHh
Q 014581 220 PVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMM 299 (422)
Q Consensus 220 Pv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~ 299 (422)
.|.+-+.+. ++..+.++.+.++|+|.|++--. -|++ ....+.++++++.+
T Consensus 98 ~V~aavg~~-~~~~er~~~L~~agvD~ivID~a------------------------~g~s-----~~~~~~ik~ik~~~ 147 (352)
T PF00478_consen 98 LVAAAVGTR-DDDFERAEALVEAGVDVIVIDSA------------------------HGHS-----EHVIDMIKKIKKKF 147 (352)
T ss_dssp CEEEEEESS-TCHHHHHHHHHHTT-SEEEEE-S------------------------STTS-----HHHHHHHHHHHHHS
T ss_pred eEEEEecCC-HHHHHHHHHHHHcCCCEEEcccc------------------------CccH-----HHHHHHHHHHHHhC
Confidence 555555554 34577889999999999865321 1222 23456778888876
Q ss_pred hccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 300 KSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 300 ~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+ ++||| .|.|.|++.+...+.+|||+|-||
T Consensus 148 ~------~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 148 P------DVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp T------TSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred C------CceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 4 68888 567999999999999999999988
No 266
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.36 E-value=0.012 Score=55.00 Aligned_cols=130 Identities=20% Similarity=0.158 Sum_probs=78.2
Q ss_pred HHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCC----C----ChHHHHHHHHH
Q 014581 170 DRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNI----T----DITEPARVALR 241 (422)
Q Consensus 170 ~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~----~----~~~~~a~~l~~ 241 (422)
+.+.++|+|++-+|..+. .+.+.++++.+++. +.++++=+.+.. . .+..++....+
T Consensus 74 ~~~~~~gad~vtvh~e~g---------------~~~l~~~i~~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e 137 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTG---------------RDSLKAVVEAAAES-GGKVFVVVEMSHPGALEFIQPHADKLAKLAQE 137 (215)
T ss_pred HHHHhCCCCEEEEcCcCC---------------HHHHHHHHHHHHhc-CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Confidence 556678999999986321 12466677777654 566655333321 1 13455566667
Q ss_pred cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCH-H
Q 014581 242 SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETG-G 320 (422)
Q Consensus 242 aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~-~ 320 (422)
.|+++.....+ .++.|+++++.... ++.+ ..|||... .
T Consensus 138 ~G~~g~~~~~~-----------------------------------~~~~i~~l~~~~~~-----~~~i-vdgGI~~~g~ 176 (215)
T PRK13813 138 AGAFGVVAPAT-----------------------------------RPERVRYIRSRLGD-----ELKI-ISPGIGAQGG 176 (215)
T ss_pred hCCCeEEECCC-----------------------------------cchhHHHHHHhcCC-----CcEE-EeCCcCCCCC
Confidence 88777642211 02345566665531 3445 88999864 2
Q ss_pred HHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHH
Q 014581 321 DAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFM 358 (422)
Q Consensus 321 da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m 358 (422)
++.+++.+|||.+.+||+++.. ++ ..+..+.+++.|
T Consensus 177 ~~~~~~~aGad~iV~Gr~I~~~-~d-~~~~~~~l~~~~ 212 (215)
T PRK13813 177 KAADAIKAGADYVIVGRSIYNA-AD-PREAAKAINEEI 212 (215)
T ss_pred CHHHHHHcCCCEEEECcccCCC-CC-HHHHHHHHHHHH
Confidence 5888889999999999998865 33 233344444333
No 267
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=97.36 E-value=0.041 Score=52.77 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
+++-++.++++++++ +.|++--|+ ++++. +.+.+. +|.++|-.. .+++.+++ ++
T Consensus 66 ~eeGL~~L~~vk~~~-GlpvvTeV~---~~~~~----~~v~~~-~DilQIgAr-------------n~rn~~LL----~a 119 (264)
T PRK05198 66 LEEGLKILQEVKETF-GVPVLTDVH---EPEQA----APVAEV-VDVLQIPAF-------------LCRQTDLL----VA 119 (264)
T ss_pred hHHHHHHHHHHHHHH-CCceEEEeC---CHHHH----HHHHhh-CcEEEECch-------------hcchHHHH----HH
Confidence 678888899999887 899999886 34442 333343 899998531 12444444 44
Q ss_pred HhhccCccEEEEECCCC--CChHHHHHHHHHcCCCEEEEecCC
Q 014581 213 INAKATVPVWAKMTPNI--TDITEPARVALRSGSEGVSAINTI 253 (422)
Q Consensus 213 vr~~~~iPv~vKl~~~~--~~~~~~a~~l~~aGadgi~v~n~~ 253 (422)
+.+ +++||.+|=.... .+....++.+...|-.-|.+.-|.
T Consensus 120 ~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG 161 (264)
T PRK05198 120 AAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERG 161 (264)
T ss_pred Hhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 433 3899999965332 245667788889999999888764
No 268
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=97.35 E-value=0.046 Score=52.22 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.++-++.++++++++ +.|++--|+ ++++. +.+.+. +|.++|-.. .+++.++ +++
T Consensus 58 ~eeGL~iL~~vk~~~-glpvvTeV~---~~~~~----~~vae~-vDilQIgAr-------------n~rn~~L----L~a 111 (258)
T TIGR01362 58 LEEGLKILQKVKEEF-GVPILTDVH---ESSQC----EPVAEV-VDIIQIPAF-------------LCRQTDL----LVA 111 (258)
T ss_pred HHHHHHHHHHHHHHh-CCceEEEeC---CHHHH----HHHHhh-CcEEEeCch-------------hcchHHH----HHH
Confidence 678888899999887 899999886 34442 223343 899998531 1244444 444
Q ss_pred HhhccCccEEEEECCCC--CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHH
Q 014581 213 INAKATVPVWAKMTPNI--TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALG 290 (422)
Q Consensus 213 vr~~~~iPv~vKl~~~~--~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~ 290 (422)
+.+ +++||.+|=.... .+....++.+...|-..|++.-|... + +|.. .-..++
T Consensus 112 ~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t--------------------f-~y~r---~~~D~~ 166 (258)
T TIGR01362 112 AAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS--------------------F-GYNN---LVVDMR 166 (258)
T ss_pred Hhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC--------------------c-CCCC---cccchh
Confidence 433 4899999955332 24556778888999998988876421 1 1110 012234
Q ss_pred HHHHHHHHhhccCCCCCceEEEe---------------cCCCCH--HHHHHHHHhCCCEEEEhh
Q 014581 291 KVMSIAKMMKSEFNDKDYSLSGI---------------GGVETG--GDAAEFILLGANTVQVCT 337 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipIIa~---------------GGI~s~--~da~~~l~aGAd~V~vgt 337 (422)
.+..+++. ++|||.. ||.+.. .-++.++.+|||++++=+
T Consensus 167 ~ip~~k~~--------~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 167 SLPIMREL--------GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred hhHHHHhc--------CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 55555542 5788864 444432 235567789999999863
No 269
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.35 E-value=0.011 Score=59.38 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhCC-CCeEEEEeC------CCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcc-ccccccccChhH
Q 014581 134 ETMLKEFKQLKALYP-DKILIASIM------EEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPER-KMGAAVGQDCRL 205 (422)
Q Consensus 134 e~~l~~i~~~k~~~~-~~pvi~si~------~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~-~~G~~l~~~~~~ 205 (422)
.-.++.|+.+++..+ +.||.+-+. .+.+.++..++++.++++|+|.||+..+........ .........+..
T Consensus 200 rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 279 (338)
T cd04733 200 RLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAY 279 (338)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchh
Confidence 344556677776653 568888774 246788889999999999999999876542211000 000000011222
Q ss_pred HHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEE
Q 014581 206 LEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 206 v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v 249 (422)
..+..+.+|+.+++||++= ..+.+.....+.+.+.++|.|.+
T Consensus 280 ~~~~~~~ik~~v~iPVi~~--G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVT--GGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred hHHHHHHHHHHcCCCEEEe--CCCCCHHHHHHHHHcCCCCeeee
Confidence 3466777888889999873 44544444444444445787643
No 270
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=97.32 E-value=0.033 Score=55.75 Aligned_cols=147 Identities=20% Similarity=0.178 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
++-++.+.+++++. +.|++..++ ++++ ++.+.+. +|++.|--. ..++.+.++++-+
T Consensus 143 ~~gL~~L~~~~~~~-Gl~v~tev~---d~~~----~~~l~~~-vd~lqIgAr-------------~~~N~~LL~~va~-- 198 (335)
T PRK08673 143 EEGLKLLAEAREET-GLPIVTEVM---DPRD----VELVAEY-VDILQIGAR-------------NMQNFDLLKEVGK-- 198 (335)
T ss_pred HHHHHHHHHHHHHc-CCcEEEeeC---CHHH----HHHHHHh-CCeEEECcc-------------cccCHHHHHHHHc--
Confidence 44555677767665 889999996 3433 2334444 788887521 1244555554432
Q ss_pred hhccCccEEEEECCC--CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHH
Q 014581 214 NAKATVPVWAKMTPN--ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGK 291 (422)
Q Consensus 214 r~~~~iPv~vKl~~~--~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~ 291 (422)
+++||++|-... +.++...++.+...|-.-+++.-+... ++..+ ...-+.++.
T Consensus 199 ---~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~-------------------tf~~~---~~~~ldl~a 253 (335)
T PRK08673 199 ---TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIR-------------------TFETA---TRNTLDLSA 253 (335)
T ss_pred ---CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC-------------------CCCCc---ChhhhhHHH
Confidence 489999997643 335666677788888877777654211 00000 001234566
Q ss_pred HHHHHHHhhccCCCCCceEEEe----cCCCC--HHHHHHHHHhCCCEEEEh
Q 014581 292 VMSIAKMMKSEFNDKDYSLSGI----GGVET--GGDAAEFILLGANTVQVC 336 (422)
Q Consensus 292 v~~i~~~~~~~~~~~~ipIIa~----GGI~s--~~da~~~l~aGAd~V~vg 336 (422)
+..+++.. ++|||+. +|.+. +.-++.++.+|||++++=
T Consensus 254 i~~lk~~~-------~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE 297 (335)
T PRK08673 254 VPVIKKLT-------HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVE 297 (335)
T ss_pred HHHHHHhc-------CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEE
Confidence 67777654 7899884 33321 245678889999966654
No 271
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=97.32 E-value=0.025 Score=54.79 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=85.6
Q ss_pred CCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
.||.+-... ++...+.+.++|+-++-++.-.. ...+|+++.+.+ ++++.+
T Consensus 15 ~~i~~~tay---D~~sArl~e~aG~d~i~vGds~~------------------------~~~lG~~Dt~~v---tl~em~ 64 (264)
T PRK00311 15 EKIVMLTAY---DYPFAKLFDEAGVDVILVGDSLG------------------------MVVLGYDSTLPV---TLDDMI 64 (264)
T ss_pred CCEEEEeCC---CHHHHHHHHHcCCCEEEECHHHH------------------------HHHcCCCCCCCc---CHHHHH
Confidence 466554433 56767777889999887652110 112344544433 388888
Q ss_pred HHHHHHHhhCCCCeEEEEeC-CCC--CHHH-HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 138 KEFKQLKALYPDKILIASIM-EEY--NKAA-WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~-~~~--~~~~-~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
...+.+.+..+..+|++-+. +++ ++++ .....+.++++|+++|-|-=+ +...+.++++
T Consensus 65 ~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al 126 (264)
T PRK00311 65 YHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG------------------EEVAETIKRL 126 (264)
T ss_pred HHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHH
Confidence 88888777553334776663 223 5555 444556666699999976411 1234455555
Q ss_pred hhccCccEEE--EECCC------------CC-----ChHHHHHHHHHcCCCEEEEe
Q 014581 214 NAKATVPVWA--KMTPN------------IT-----DITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 214 r~~~~iPv~v--Kl~~~------------~~-----~~~~~a~~l~~aGadgi~v~ 250 (422)
++. .+||+- -|+|. -+ ++.+-+++++++||++|++-
T Consensus 127 ~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 127 VER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLE 181 (264)
T ss_pred HHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 544 889861 11221 01 24566788899999999754
No 272
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.25 E-value=0.078 Score=51.46 Aligned_cols=207 Identities=17% Similarity=0.209 Sum_probs=115.8
Q ss_pred CcceEeCCeecC-CCceecCCCCC-CCHHH----HHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccc
Q 014581 46 DLSITVNGLQMP-NPFVIGSGPPG-TNYTV----MKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQI 119 (422)
Q Consensus 46 dL~~~~~Gl~l~-nPi~~AAg~~~-~~~~~----~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~ 119 (422)
+-.+++.++.+. .++++=|||-+ .+.+. .+++.++|+-++-.++ + + ||-. .
T Consensus 13 ~~~~~~~~~~~g~~~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~-~-k--------pRTs-------------~ 69 (266)
T PRK13398 13 KTIVKVGDVVIGGEEKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGA-F-K--------PRTS-------------P 69 (266)
T ss_pred CcEEEECCEEEcCCCEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEee-e-c--------CCCC-------------C
Confidence 334455566665 36777777765 24433 4555567776443322 1 1 2210 1
Q ss_pred cccccccccCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccc
Q 014581 120 IGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAV 199 (422)
Q Consensus 120 ~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l 199 (422)
.+|... .+++++.+++++++. +.|++..+. ++.. ++.+.+. +|++.|--. .
T Consensus 70 ~s~~G~-------g~~gl~~l~~~~~~~-Gl~~~te~~---d~~~----~~~l~~~-vd~~kIga~--~----------- 120 (266)
T PRK13398 70 YSFQGL-------GEEGLKILKEVGDKY-NLPVVTEVM---DTRD----VEEVADY-ADMLQIGSR--N----------- 120 (266)
T ss_pred CccCCc-------HHHHHHHHHHHHHHc-CCCEEEeeC---Chhh----HHHHHHh-CCEEEECcc--c-----------
Confidence 122322 367777788877765 889999996 2333 2334444 788876521 1
Q ss_pred ccChhHHHHHHHHHhhccCccEEEEECCC--CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 200 GQDCRLLEEVCGWINAKATVPVWAKMTPN--ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 200 ~~~~~~v~~iv~~vr~~~~iPv~vKl~~~--~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
.++.+.++++- .+++||++|-... +.++...++.+...|-.-+++.-+... +..
T Consensus 121 ~~n~~LL~~~a-----~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~-------------------t~~ 176 (266)
T PRK13398 121 MQNFELLKEVG-----KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIR-------------------TFE 176 (266)
T ss_pred ccCHHHHHHHh-----cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCC-------------------CCC
Confidence 23334444432 3489999996543 334566667777788766666543210 001
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEE-ecCCCC-----HHHHHHHHHhCCCEEEEhhH
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSG-IGGVET-----GGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa-~GGI~s-----~~da~~~l~aGAd~V~vgta 338 (422)
+|. ..-..++.+..+++.. ++||+. +.=... ...+..++.+||+++++=+-
T Consensus 177 ~Y~---~~~vdl~~i~~lk~~~-------~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H 233 (266)
T PRK13398 177 TYT---RNTLDLAAVAVIKELS-------HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVH 233 (266)
T ss_pred CCC---HHHHHHHHHHHHHhcc-------CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEecc
Confidence 111 1123455666666544 688888 333233 67788889999998887643
No 273
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0025 Score=60.32 Aligned_cols=91 Identities=26% Similarity=0.352 Sum_probs=72.1
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
.++.+.|+...+.|+..+.+.. ++... .| .+.-+..++++.+.+ ++|
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVD---------LdgA~-----------~g------~~~n~~~i~~i~~~~-------~~~ 77 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVD---------LDGAK-----------AG------GPRNLEAIKEILEAT-------DVP 77 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEee---------ccccc-----------cC------CcccHHHHHHHHHhC-------CCC
Confidence 3678999999999999997663 22211 11 133356778888876 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHH
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEEL 354 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l 354 (422)
|=..|||+|-+++.+++.+|++-|-+||..+.+ |.+++++.++.
T Consensus 78 vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~-p~~v~~~~~~~ 121 (241)
T COG0106 78 VQVGGGIRSLEDVEALLDAGVARVIIGTAAVKN-PDLVKELCEEY 121 (241)
T ss_pred EEeeCCcCCHHHHHHHHHCCCCEEEEecceecC-HHHHHHHHHHc
Confidence 999999999999999999999999999999998 88888776553
No 274
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.24 E-value=0.012 Score=61.55 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=52.3
Q ss_pred hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEE
Q 014581 232 ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLS 311 (422)
Q Consensus 232 ~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipII 311 (422)
..+-++.+.++|+|.|.+--+- |.+ +..++.|+++++.++ ++||+
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~------------------------g~~-----~~~~~~i~~i~~~~~------~~~vi 269 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSH------------------------GHS-----IYVIDSIKEIKKTYP------DLDII 269 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCC------------------------CcH-----hHHHHHHHHHHHhCC------CCCEE
Confidence 3567788999999988754321 111 234577888887653 78888
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 312 GIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 312 a~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+ |+|.|.+++..++.+|||+|.+|
T Consensus 270 ~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 270 A-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred E-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 8 89999999999999999999765
No 275
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=97.21 E-value=0.031 Score=53.85 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=85.0
Q ss_pred CCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
.||.+-.. .++-..+.+.++|+-++-+++-.. ...+|+++.+.+ ++++.+
T Consensus 12 ~~l~~~~a---yD~~sA~l~e~aG~d~i~vGds~~------------------------~~~lG~pDt~~v---tl~em~ 61 (254)
T cd06557 12 EKIVMLTA---YDYPTAKLADEAGVDVILVGDSLG------------------------MVVLGYDSTLPV---TLDEMI 61 (254)
T ss_pred CcEEEEeC---CCHHHHHHHHHcCCCEEEECHHHH------------------------HHHcCCCCCCCc---CHHHHH
Confidence 46654443 356667777889999887652110 112344444433 388888
Q ss_pred HHHHHHHhhCCCCe-EEEEeC-CCC--CHHHHHHHH-HHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 138 KEFKQLKALYPDKI-LIASIM-EEY--NKAAWEELI-DRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 138 ~~i~~~k~~~~~~p-vi~si~-~~~--~~~~~~~~a-~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
...+.+.+.. +.| |++-+. +++ ++++..+.+ +.++++|+++|-|-=+ +...+.+++
T Consensus 62 ~~~~~V~r~~-~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~------------------~~~~~~I~a 122 (254)
T cd06557 62 YHTRAVRRGA-PRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG------------------AEVAETIRA 122 (254)
T ss_pred HHHHHHHhcC-CCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHH
Confidence 8888887755 567 666553 222 466655554 5555699999976410 234445555
Q ss_pred HhhccCccEE--EEECCC-----------------CCChHHHHHHHHHcCCCEEEEe
Q 014581 213 INAKATVPVW--AKMTPN-----------------ITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 213 vr~~~~iPv~--vKl~~~-----------------~~~~~~~a~~l~~aGadgi~v~ 250 (422)
+++. .+||+ +-|+|. ...+.+-++++.++||++|.+-
T Consensus 123 l~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE 178 (254)
T cd06557 123 LVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLE 178 (254)
T ss_pred HHHc-CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 5544 78877 222221 0124466788899999999654
No 276
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=97.20 E-value=0.22 Score=49.03 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... +.||++.++ ..+.++-.+.++.+++.|+|++-+- -|.. +..+.+.+.+..+
T Consensus 52 ~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ai~~a~~A~~~Gad~v~v~--pP~y---------~~~~~~~l~~~f~ 119 (294)
T TIGR02313 52 LEERKQAIENAIDQIAGRIPFAPGTG-ALNHDETLELTKFAEEAGADAAMVI--VPYY---------NKPNQEALYDHFA 119 (294)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEECC-cchHHHHHHHHHHHHHcCCCEEEEc--CccC---------CCCCHHHHHHHHH
Confidence 4555555555444333 479999996 5677788999999999999998764 2332 1123467778888
Q ss_pred HHhhcc-CccEEEEECCCCCC---hHHHHHHHH-Hc-CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc
Q 014581 212 WINAKA-TVPVWAKMTPNITD---ITEPARVAL-RS-GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285 (422)
Q Consensus 212 ~vr~~~-~iPv~vKl~~~~~~---~~~~a~~l~-~a-Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~ 285 (422)
.|.+.+ ++||++--.|..+. ..++..++. +. .+.||.-+ .+.
T Consensus 120 ~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~s-------------------------s~d------- 167 (294)
T TIGR02313 120 EVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKES-------------------------NKD------- 167 (294)
T ss_pred HHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeC-------------------------CCC-------
Confidence 888888 89999986554321 244555554 32 23333211 011
Q ss_pred hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
+..+.++.+.... ++.|+. | - -..+...+.+||++...+.+-+.
T Consensus 168 ---~~~~~~~~~~~~~-----~~~v~~-G-~--d~~~~~~l~~Ga~G~is~~~n~~ 211 (294)
T TIGR02313 168 ---FEHLNHLFLEAGR-----DFLLFC-G-I--ELLCLPMLAIGAAGSIAATANVE 211 (294)
T ss_pred ---HHHHHHHHHhcCC-----CeEEEE-c-c--hHHHHHHHHCCCCEEEecHHhhC
Confidence 1233344443321 454443 2 2 35667788999999998887654
No 277
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=97.19 E-value=0.22 Score=48.91 Aligned_cols=162 Identities=17% Similarity=0.038 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... ..||+++++ +.+.++-.+.++.+++.|+|++-+- .|.. +..+.+.+.+..+
T Consensus 53 ~eEr~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~i~la~~a~~~Gad~v~v~--~P~y---------~~~~~~~i~~yf~ 120 (290)
T TIGR00683 53 TEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAVELGKYATELGYDCLSAV--TPFY---------YKFSFPEIKHYYD 120 (290)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHHHHHHHHHhCCCEEEEe--CCcC---------CCCCHHHHHHHHH
Confidence 4555555555544332 469999996 5677888999999999999999872 3432 1133466777777
Q ss_pred HHhhcc-CccEEEEECCCCCC---hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 212 WINAKA-TVPVWAKMTPNITD---ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 212 ~vr~~~-~iPv~vKl~~~~~~---~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
.|.+.+ ++||++--.|..+. ..++...+.+. ..|+.+= | ..+.
T Consensus 121 ~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~--pnv~giK--------~--------------s~~d--------- 167 (290)
T TIGR00683 121 TIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKN--PKVLGVK--------F--------------TAGD--------- 167 (290)
T ss_pred HHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcC--CCEEEEE--------e--------------CCCC---------
Confidence 786666 79999987664332 24455555443 2222110 0 0111
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHH
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~ 352 (422)
+..+.++.+..+ ++.|+ +|. -+.....+.+|+++...+++-+. |..+.++.+
T Consensus 168 -~~~~~~~~~~~~------~~~v~-~G~---d~~~~~~l~~G~~G~i~~~~n~~--P~~~~~i~~ 219 (290)
T TIGR00683 168 -FYLLERLKKAYP------NHLIW-AGF---DEMMLPAASLGVDGAIGSTFNVN--GVRARQIFE 219 (290)
T ss_pred -HHHHHHHHHhCC------CCEEE-ECc---hHHHHHHHHCCCCEEEecHHHhC--HHHHHHHHH
Confidence 123344544432 45444 432 35577788999999987766553 455444443
No 278
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.19 E-value=0.023 Score=58.46 Aligned_cols=95 Identities=12% Similarity=0.177 Sum_probs=60.6
Q ss_pred EEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhc
Q 014581 222 WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKS 301 (422)
Q Consensus 222 ~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~ 301 (422)
++-++. .+..+ +..+.+.|+|+|.+.--+.. .+ ++. .. .|..++.++++++.+..
T Consensus 302 iIGvSt--Hs~eE-l~~A~~~gaDYI~lGPIFpT------~T-K~~----------~~-----~p~Gl~~L~~~~~l~~~ 356 (437)
T PRK12290 302 RLGLST--HGYYE-LLRIVQIQPSYIALGHIFPT------TT-KQM----------PS-----KPQGLVRLALYQKLIDT 356 (437)
T ss_pred EEEEec--CCHHH-HHHHhhcCCCEEEECCccCC------CC-CCC----------CC-----CCCCHHHHHHHHHHhhh
Confidence 444443 23444 56677899999976543321 11 110 10 24445666666665421
Q ss_pred c--CCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 302 E--FNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 302 ~--~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
. -...++||++.||| +.+++.+.+.+||++|-+-|+++..
T Consensus 357 ~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~A 398 (437)
T PRK12290 357 IPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITLA 398 (437)
T ss_pred ccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 0 00016999999999 6999999999999999999999864
No 279
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.18 E-value=0.011 Score=58.73 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCC-CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccc-ccccccChhHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEY-NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKM-GAAVGQDCRLLEEV 209 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~-~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~-G~~l~~~~~~v~~i 209 (422)
++...+.++.+++..+ +.||.+-+..+. +.+++.++++.++++|+|+|.++-.... ..| |.. -+ .+.
T Consensus 116 ~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~----~~y~g~~--~~----~~~ 185 (312)
T PRK10550 116 PELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE----DGYRAEH--IN----WQA 185 (312)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc----cCCCCCc--cc----HHH
Confidence 3444555666666554 589998875443 3356889999999999999999843221 111 100 02 256
Q ss_pred HHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 210 CGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 210 v~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
++.+++.+++||+. +.++.+.....+.+...|+|+|.+.
T Consensus 186 i~~ik~~~~iPVi~--nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 186 IGEIRQRLTIPVIA--NGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHHhhcCCcEEE--eCCcCCHHHHHHHHhccCCCEEEEc
Confidence 66777777999986 5677666666666667899998654
No 280
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=97.18 E-value=0.26 Score=48.30 Aligned_cols=97 Identities=22% Similarity=0.163 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... ..||++.++ ..+.++..+.++.+++.|+|++-+- .|.. +..+.+.+.+..+
T Consensus 53 ~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~~ai~~a~~a~~~Gad~v~~~--~P~y---------~~~~~~~i~~~~~ 120 (288)
T cd00954 53 VEERKQIAEIVAEAAKGKVTLIAHVG-SLNLKESQELAKHAEELGYDAISAI--TPFY---------YKFSFEEIKDYYR 120 (288)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEeccC-CCCHHHHHHHHHHHHHcCCCEEEEe--CCCC---------CCCCHHHHHHHHH
Confidence 4555555555444332 469999996 4677888999999999999999754 3432 1123466788888
Q ss_pred HHhhcc-CccEEEEECCCCCC---hHHHHHHHHH
Q 014581 212 WINAKA-TVPVWAKMTPNITD---ITEPARVALR 241 (422)
Q Consensus 212 ~vr~~~-~iPv~vKl~~~~~~---~~~~a~~l~~ 241 (422)
.|.+.+ ++||++--.|..+. ..++..++.+
T Consensus 121 ~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 121 EIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 888888 89999976664332 3455555554
No 281
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.17 E-value=0.018 Score=57.37 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhC-CCCeEEEEeCC------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHH
Q 014581 134 ETMLKEFKQLKALY-PDKILIASIME------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 206 (422)
Q Consensus 134 e~~l~~i~~~k~~~-~~~pvi~si~~------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v 206 (422)
...++.++.+++.. ++.||.+-+.. +.+.+++.++++++++.|+|+|++......... ..... ........
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~-~~~~~-~~~~~~~~ 269 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPP-PIIPP-PYVPEGYF 269 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cccCC-CCCCcchh
Confidence 33455667777665 36789887752 246788999999999999999998754322110 00000 00011223
Q ss_pred HHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHc-CCCEEEEe
Q 014581 207 EEVCGWINAKATVPVWAKMTPNITDITEPARVALRS-GSEGVSAI 250 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~a-Gadgi~v~ 250 (422)
.+.++.+++.+++||++- ..+.+... ++.+.+. |+|.|.+.
T Consensus 270 ~~~~~~ir~~~~iPVi~~--Ggi~t~~~-a~~~l~~g~aD~V~ig 311 (327)
T cd02803 270 LELAEKIKKAVKIPVIAV--GGIRDPEV-AEEILAEGKADLVALG 311 (327)
T ss_pred HHHHHHHHHHCCCCEEEe--CCCCCHHH-HHHHHHCCCCCeeeec
Confidence 355667777778999874 45555555 4444555 79987554
No 282
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=97.17 E-value=0.15 Score=50.22 Aligned_cols=97 Identities=20% Similarity=0.112 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... ..||++.++ ..+.++..+.++.+++.|+|++-+- .|.. +....+.+.+..+
T Consensus 56 ~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~~ai~~a~~a~~~Gad~v~v~--~P~y---------~~~~~~~l~~~f~ 123 (293)
T PRK04147 56 TEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTAEAQELAKYATELGYDAISAV--TPFY---------YPFSFEEICDYYR 123 (293)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEecCC-CCCHHHHHHHHHHHHHcCCCEEEEe--CCcC---------CCCCHHHHHHHHH
Confidence 4555555555554433 469999996 5677888999999999999999865 2432 1123466777888
Q ss_pred HHhhccCccEEEEECCCCCC---hHHHHHHHHH
Q 014581 212 WINAKATVPVWAKMTPNITD---ITEPARVALR 241 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~ 241 (422)
.|.+.+++||++--.|..+. ..++.+++.+
T Consensus 124 ~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 124 EIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 88888899999986664321 3455555554
No 283
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=97.16 E-value=0.28 Score=48.06 Aligned_cols=97 Identities=18% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+..+ +.||++.++ +.+.++..+.++.++++|+|++-+- -|... ..+.+.+.+..+
T Consensus 53 ~~Er~~~~~~~~~~~~~~~~vi~gv~-~~~~~~~i~~a~~a~~~G~d~v~~~--pP~~~---------~~~~~~i~~~~~ 120 (292)
T PRK03170 53 HEEHEELIRAVVEAVNGRVPVIAGTG-SNSTAEAIELTKFAEKAGADGALVV--TPYYN---------KPTQEGLYQHFK 120 (292)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEeecC-CchHHHHHHHHHHHHHcCCCEEEEC--CCcCC---------CCCHHHHHHHHH
Confidence 4555555555554433 469999996 4577888999999999999999864 23321 123466777888
Q ss_pred HHhhccCccEEEEECCCCCC---hHHHHHHHHH
Q 014581 212 WINAKATVPVWAKMTPNITD---ITEPARVALR 241 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~ 241 (422)
.|.+.+++||++--.|..+. ..++.+.+.+
T Consensus 121 ~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 121 AIAEATDLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHHc
Confidence 88888899999986664321 2455666644
No 284
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=97.15 E-value=0.22 Score=48.61 Aligned_cols=162 Identities=19% Similarity=0.139 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... +.|+++.+. +.+.++..+.++.++++|+|++-+- .|.. +....+.+.+..+
T Consensus 52 ~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~~~~a~~a~~~G~d~v~~~--~P~~---------~~~~~~~l~~~~~ 119 (284)
T cd00950 52 DEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAEAIELTKRAEKAGADAALVV--TPYY---------NKPSQEGLYAHFK 119 (284)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEeccC-CccHHHHHHHHHHHHHcCCCEEEEc--cccc---------CCCCHHHHHHHHH
Confidence 4566665655555443 469999996 5677888999999999999999764 2332 1123466777888
Q ss_pred HHhhccCccEEEEECCCCCC---hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 212 WINAKATVPVWAKMTPNITD---ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
.|.+.+++||++--.|..+. ..++.+++.+. ..|+.+=- ..+.
T Consensus 120 ~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~--p~v~giK~----------------------s~~~---------- 165 (284)
T cd00950 120 AIAEATDLPVILYNVPGRTGVNIEPETVLRLAEH--PNIVGIKE----------------------ATGD---------- 165 (284)
T ss_pred HHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcC--CCEEEEEE----------------------CCCC----------
Confidence 88887899999876664221 24445555443 22322100 0011
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
+..+.++++..++ ++.|+... -..+...+.+|+++...+.+-+. |..+.++.
T Consensus 166 ~~~~~~~~~~~~~-----~~~v~~G~----d~~~~~~~~~G~~G~~s~~~n~~--p~~~~~~~ 217 (284)
T cd00950 166 LDRVSELIALCPD-----DFAVLSGD----DALTLPFLALGGVGVISVAANVA--PKLMAEMV 217 (284)
T ss_pred HHHHHHHHHhCCC-----CeEEEeCC----hHhHHHHHHCCCCEEEehHHHhh--HHHHHHHH
Confidence 1233345554432 55554332 23466778899999988877443 44444443
No 285
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.15 E-value=0.083 Score=52.01 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 134 e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
+.+...++.+.+.+. +.||.+.+--+ +.+ .++++.+.|++.|.+..|.-. ++...+..+++++.
T Consensus 61 ~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~----~i~~ai~~GftSVm~d~S~l~----------~eEni~~t~~v~~~ 125 (293)
T PRK07315 61 KVCKNLIENLVESMGITVPVAIHLDHG-HYE----DALECIEVGYTSIMFDGSHLP----------VEENLKLAKEVVEK 125 (293)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEECCCC-CHH----HHHHHHHcCCCEEEEcCCCCC----------HHHHHHHHHHHHHH
Confidence 333344444444331 46999999533 432 344555679999998865211 12233444444443
Q ss_pred HhhccCccEEEEECC-----C-------CCChHHHHHHHHHcCCCEEEEe-cCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 213 INAKATVPVWAKMTP-----N-------ITDITEPARVALRSGSEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 213 vr~~~~iPv~vKl~~-----~-------~~~~~~~a~~l~~aGadgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
.+. .++||-..+.. + ++++.+ |+.+.+.|+|.|-+. ++..+ -|
T Consensus 126 a~~-~gv~vE~ElG~i~g~ed~~~g~s~~t~pee-a~~f~~tgvD~LAv~iG~vHG----------------------~y 181 (293)
T PRK07315 126 AHA-KGISVEAEVGTIGGEEDGIIGKGELAPIED-AKAMVETGIDFLAAGIGNIHG----------------------PY 181 (293)
T ss_pred HHH-cCCEEEEecCcccCcCccccCccCCCCHHH-HHHHHHcCCCEEeeccccccc----------------------cC
Confidence 322 25565443321 1 244444 555668999999765 23211 11
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecC--CCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGG--VETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GG--I~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.++ .+++.++.++++++.+. ++|+++-|| |. .+++.+++.+|++-|-++|.+...
T Consensus 182 ~t~-~k~l~~e~L~~i~~~~~------~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv~T~i~~~ 238 (293)
T PRK07315 182 PEN-WEGLDLDHLEKLTEAVP------GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNVNTECQIA 238 (293)
T ss_pred CCC-CCcCCHHHHHHHHHhcc------CCCEEEECCCCCC-HHHHHHHHHcCCCEEEEccHHHHH
Confidence 111 01355677888888762 599999999 85 789999999999999999999863
No 286
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.15 E-value=0.12 Score=51.96 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
++-++.++++++++ +.|++..++ +.++ ++.+.+. +|++.|--. ..++.++++++-
T Consensus 151 ~~gl~~L~~~~~e~-Gl~~~tev~---d~~~----v~~~~~~-~d~lqIga~-------------~~~n~~LL~~va--- 205 (352)
T PRK13396 151 ESALELLAAAREAT-GLGIITEVM---DAAD----LEKIAEV-ADVIQVGAR-------------NMQNFSLLKKVG--- 205 (352)
T ss_pred HHHHHHHHHHHHHc-CCcEEEeeC---CHHH----HHHHHhh-CCeEEECcc-------------cccCHHHHHHHH---
Confidence 56677788888776 889999996 3443 2334444 799987521 124444444433
Q ss_pred hhccCccEEEEECCC--CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHH
Q 014581 214 NAKATVPVWAKMTPN--ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGK 291 (422)
Q Consensus 214 r~~~~iPv~vKl~~~--~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~ 291 (422)
+ +++||++|-... ..++...++.+.+.|-.-|++.-+... ++. .+|. .....++.
T Consensus 206 -~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~r-------tf~-----------s~y~---~~~~dl~a 262 (352)
T PRK13396 206 -A-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIR-------TFD-----------RQYT---RNTLDLSV 262 (352)
T ss_pred -c-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCc-------cCc-----------CCCC---CCCcCHHH
Confidence 2 489999996543 334566677788889887877765321 000 0110 11334677
Q ss_pred HHHHHHHhhccCCCCCceEEEec----CCC--CHHHHHHHHHhCCCEEEEhhHH-----Hhhh-----hHHHHHHHHHHH
Q 014581 292 VMSIAKMMKSEFNDKDYSLSGIG----GVE--TGGDAAEFILLGANTVQVCTGV-----MMHG-----YGLVKRLCEELK 355 (422)
Q Consensus 292 v~~i~~~~~~~~~~~~ipIIa~G----GI~--s~~da~~~l~aGAd~V~vgtal-----l~~G-----p~~i~~i~~~l~ 355 (422)
+..+++.. ++|||..- |-+ .+.-+..++.+|||++++=.-+ +.+| |.-++++.++++
T Consensus 263 i~~lk~~~-------~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~ 335 (352)
T PRK13396 263 IPVLRSLT-------HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELA 335 (352)
T ss_pred HHHHHHhh-------CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHH
Confidence 77777664 68997763 322 2345667778999955553211 1121 445666666655
Q ss_pred HH
Q 014581 356 DF 357 (422)
Q Consensus 356 ~~ 357 (422)
..
T Consensus 336 ~i 337 (352)
T PRK13396 336 VI 337 (352)
T ss_pred HH
Confidence 43
No 287
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.18 Score=49.78 Aligned_cols=155 Identities=21% Similarity=0.148 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+++... ..|||+.++ +.+.++-.++++.+++.|+|++-+= .|.. . ..+.+.+.+..+
T Consensus 56 ~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~eai~lak~a~~~Gad~il~v--~PyY-~--------k~~~~gl~~hf~ 123 (299)
T COG0329 56 LEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAEAIELAKHAEKLGADGILVV--PPYY-N--------KPSQEGLYAHFK 123 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHHHHHHHHHHHhcCCCEEEEe--CCCC-c--------CCChHHHHHHHH
Confidence 5566666666665443 368999996 6678888999999999999999753 2332 1 123466788888
Q ss_pred HHhhccCccEEEEECCCCCC---hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 212 WINAKATVPVWAKMTPNITD---ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
+|.+.+++|+++--.|..+. ..+....+.+ ...|+.+- | ..|.
T Consensus 124 ~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~--~~nivgiK--------d--------------~~gd---------- 169 (299)
T COG0329 124 AIAEAVDLPVILYNIPSRTGVDLSPETIARLAE--HPNIVGVK--------D--------------SSGD---------- 169 (299)
T ss_pred HHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEEE--------e--------------CCcC----------
Confidence 88888899999987665432 3455555555 22332220 0 0111
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
+..+.+++....+ .--++.+| ..+.+...+.+|++++..+++-+.
T Consensus 170 ~~~~~~~~~~~~~-----~~f~v~~G---~d~~~~~~~~~G~~G~is~~~N~~ 214 (299)
T COG0329 170 LDRLEEIIAALGD-----RDFIVLSG---DDELALPALLLGADGVISVTANVA 214 (299)
T ss_pred HHHHHHHHHhcCc-----cCeeEEeC---chHHHHHHHhCCCCeEEecccccC
Confidence 2445556555431 11244454 356677778899999988877553
No 288
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.08 E-value=0.0068 Score=58.94 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhccC--ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCC
Q 014581 205 LLEEVCGWINAKAT--VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 205 ~v~~iv~~vr~~~~--iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~ 282 (422)
.+.+.++.+|+... .+|.|= +++ .+-++.+.++|+|.|-+-|..
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VE----v~t-leea~~A~~~GaDiI~LDn~~----------------------------- 212 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIE----CES-LEEAKNAMNAGADIVMCDNMS----------------------------- 212 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEE----eCC-HHHHHHHHHcCCCEEEECCCC-----------------------------
Confidence 35667777776543 556663 333 455777789999977543311
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
| +.++++.+...... .++.|+++||| +++.+.++..+|+|.+.+|+...
T Consensus 213 ---~---e~l~~~v~~~~~~~--~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 213 ---V---EEIKEVVAYRNANY--PHVLLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred ---H---HHHHHHHHHhhccC--CCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 1 23333433322111 26789999999 99999999999999999999765
No 289
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=97.08 E-value=6.5e-05 Score=73.42 Aligned_cols=92 Identities=26% Similarity=0.552 Sum_probs=74.2
Q ss_pred CccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHH
Q 014581 274 STPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEE 353 (422)
Q Consensus 274 ~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~ 353 (422)
+.+||++|.+++|.+|+.|-.+.++++ +.||.|.|+|.+.+.-++++.-||++.||||++......+++.- +.
T Consensus 19 t~~g~~~~tai~p~~l~~v~s~a~~~s------~~~i~A~gdi~saeS~l~~~~~G~s~l~v~saiqs~~~~v~e~~-~~ 91 (471)
T KOG1799|consen 19 TTYGGVSGTAIRPIALRAVTSIARALS------GFPILATGDIDSAESGLQFLHSGASVLQVCSAIQSQDFTVIEDY-TG 91 (471)
T ss_pred eeccccchhhccchhHHHHHHHhhccC------CceeeccCCcchhhhcCccccccHHHHHHHHHHhcCCCcccccc-cc
Confidence 467999999999999998988988875 79999999999999999999999999999999987743334333 55
Q ss_pred HHHHHHHcCCCCHHHhhcC
Q 014581 354 LKDFMKMHNFSSIEDFRGA 372 (422)
Q Consensus 354 l~~~m~~~G~~si~d~~G~ 372 (422)
++.++-.+.++-+-|+.|.
T Consensus 92 ~k~~~~l~~ie~~vd~~G~ 110 (471)
T KOG1799|consen 92 LKALLYLKSIEELVDWDGQ 110 (471)
T ss_pred hhhhcchhhhhhhccccCc
Confidence 6666665555556666665
No 290
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=97.03 E-value=0.021 Score=57.34 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=64.9
Q ss_pred HHHHHHHHhhCCCCeEEEEeCC------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHH
Q 014581 137 LKEFKQLKALYPDKILIASIME------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 137 l~~i~~~k~~~~~~pvi~si~~------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
++.++.+++.. +.||.+.+.. +.+.++..+++++++++|+|+|++..+.........+ +....++.
T Consensus 196 ~eii~~ir~~~-~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~-------~~~~~~~~ 267 (337)
T PRK13523 196 REIIDAVKEVW-DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVY-------PGYQVPFA 267 (337)
T ss_pred HHHHHHHHHhc-CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC-------ccccHHHH
Confidence 34455666655 6788887752 4578899999999999999999998754211000000 11123456
Q ss_pred HHHhhccCccEEEEECCCCCChHHHHHHHHHcC-CCEEE
Q 014581 211 GWINAKATVPVWAKMTPNITDITEPARVALRSG-SEGVS 248 (422)
Q Consensus 211 ~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~ 248 (422)
+.+|+.+++||++ ...+.+ .+.++.+.+.| +|.|.
T Consensus 268 ~~ik~~~~ipVi~--~G~i~~-~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 268 EHIREHANIATGA--VGLITS-GAQAEEILQNNRADLIF 303 (337)
T ss_pred HHHHhhcCCcEEE--eCCCCC-HHHHHHHHHcCCCChHH
Confidence 6777778999887 344544 45566666665 88774
No 291
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.03 E-value=0.034 Score=52.20 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=88.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC-cc-EEEEECC
Q 014581 150 KILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT-VP-VWAKMTP 227 (422)
Q Consensus 150 ~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~-iP-v~vKl~~ 227 (422)
.++++=+. ..+.++...+++.+.+.|+..+|+-+..|+. .+.++.+++... .| +.|-. .
T Consensus 13 ~~vi~vir-~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a-----------------~~~i~~l~~~~~~~p~~~vGa-G 73 (213)
T PRK06552 13 NGVVAVVR-GESKEEALKISLAVIKGGIKAIEVTYTNPFA-----------------SEVIKELVELYKDDPEVLIGA-G 73 (213)
T ss_pred CCEEEEEE-CCCHHHHHHHHHHHHHCCCCEEEEECCCccH-----------------HHHHHHHHHHcCCCCCeEEee-e
Confidence 45666565 5678999999999999999999998876652 234555554432 23 33322 3
Q ss_pred CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCC
Q 014581 228 NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKD 307 (422)
Q Consensus 228 ~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ 307 (422)
++.+ .+-++.+.++|+++++-- .++ | +.+... +.. +
T Consensus 74 TV~~-~~~~~~a~~aGA~FivsP-------~~~-------------------------~---~v~~~~-~~~-------~ 109 (213)
T PRK06552 74 TVLD-AVTARLAILAGAQFIVSP-------SFN-------------------------R---ETAKIC-NLY-------Q 109 (213)
T ss_pred eCCC-HHHHHHHHHcCCCEEECC-------CCC-------------------------H---HHHHHH-HHc-------C
Confidence 3444 456789999999998611 111 1 222222 221 5
Q ss_pred ceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHH
Q 014581 308 YSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 308 ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~ 352 (422)
+|++- |+.|+.++.+++.+|||.|.+.-+-. -|+.+++.+..
T Consensus 110 i~~iP--G~~T~~E~~~A~~~Gad~vklFPa~~-~G~~~ik~l~~ 151 (213)
T PRK06552 110 IPYLP--GCMTVTEIVTALEAGSEIVKLFPGST-LGPSFIKAIKG 151 (213)
T ss_pred CCEEC--CcCCHHHHHHHHHcCCCEEEECCccc-CCHHHHHHHhh
Confidence 65554 99999999999999999999942222 35777666643
No 292
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.01 E-value=0.028 Score=57.52 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhCC-CCeEEEEeCC--------------------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccc
Q 014581 136 MLKEFKQLKALYP-DKILIASIME--------------------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERK 194 (422)
Q Consensus 136 ~l~~i~~~k~~~~-~~pvi~si~~--------------------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~ 194 (422)
.++.++.+++..+ +.||.+-+.. +.+.++..+++++++++|+|+|++..+....... .
T Consensus 204 ~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~-~ 282 (382)
T cd02931 204 AIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYW-N 282 (382)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccccc-c
Confidence 3445666666554 5588876531 3456888899999999999999997654221000 0
Q ss_pred cccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 195 MGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 195 ~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.......+.....+++.+|+.+++||++ +..+.+.....+.+.+.++|.|.+.
T Consensus 283 -~~~~~~~~~~~~~~~~~ik~~~~~pvi~--~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 283 -HPPMYQKKGMYLPYCKALKEVVDVPVIM--AGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred -cCCccCCcchhHHHHHHHHHHCCCCEEE--eCCCCCHHHHHHHHHcCCCCeeeec
Confidence 0000011122345667788888999986 5666554444444444558877543
No 293
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=96.98 E-value=0.043 Score=53.01 Aligned_cols=134 Identities=18% Similarity=0.122 Sum_probs=91.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEEC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMT 226 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~ 226 (422)
..|+.+++. ..+++++.+.++++.+.|+..+-+.++ .+++.-.+.++++|+.. +.++.+..+
T Consensus 74 ~i~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~KiKvg---------------~~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 74 RVRVAHMLG-LGEPAEVAEEARRALEAGFRTFKLKVG---------------RDPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred ceEEEEEec-CCCHHHHHHHHHHHHHCCCCEEEEecC---------------CCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 357777775 346777777777777789999999864 11233446677777765 567777766
Q ss_pred CCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCC
Q 014581 227 PNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFN 304 (422)
Q Consensus 227 ~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~ 304 (422)
..++ +..++++.+.+.|++.|. +|.+ +..++..+++++..
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iE----------------eP~~-----------------~~d~~~~~~l~~~~----- 179 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVE----------------QPLP-----------------ADDLEGRAALARAT----- 179 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEE----------------CCCC-----------------cccHHHHHHHHhhC-----
Confidence 5443 356777888887777662 1211 11134455666654
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhC-CCEEEEhhH
Q 014581 305 DKDYSLSGIGGVETGGDAAEFILLG-ANTVQVCTG 338 (422)
Q Consensus 305 ~~~ipIIa~GGI~s~~da~~~l~aG-Ad~V~vgta 338 (422)
++||++.+.+.+..|+.+++..+ +|.|++--.
T Consensus 180 --~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 212 (265)
T cd03315 180 --DTPIMADESAFTPHDAFRELALGAADAVNIKTA 212 (265)
T ss_pred --CCCEEECCCCCCHHHHHHHHHhCCCCEEEEecc
Confidence 79999999999999999999865 889887633
No 294
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.97 E-value=0.059 Score=50.04 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=86.7
Q ss_pred HHHHHhhCCCCeEEEEeCC--C---CCHHHHHHH---HHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 140 FKQLKALYPDKILIASIME--E---YNKAAWEEL---IDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~--~---~~~~~~~~~---a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
++.+++.. +.|+.+=|.. + |+.+++..+ ++.+.+.|+|++.+.+-.+.. .-|.+.++++++
T Consensus 42 i~~~~~~~-~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg----------~iD~~~~~~Li~ 110 (201)
T PF03932_consen 42 IRQAREAV-DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDG----------EIDEEALEELIE 110 (201)
T ss_dssp HHHHHHHT-TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTS----------SB-HHHHHHHHH
T ss_pred HHHHHhhc-CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCC----------CcCHHHHHHHHH
Confidence 44455443 7888887752 2 567666544 556677899999988755543 135677777777
Q ss_pred HHhhccCccEEEEECCC-CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHH
Q 014581 212 WINAKATVPVWAKMTPN-ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALG 290 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~-~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~ 290 (422)
+.+ ..|+..=-.-+ +.+..+-.+.+.+.|++.|.-++.... ...| ++
T Consensus 111 ~a~---~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~-------------------a~~g----------~~ 158 (201)
T PF03932_consen 111 AAG---GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT-------------------ALEG----------IE 158 (201)
T ss_dssp HHT---TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS-------------------TTTC----------HH
T ss_pred hcC---CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC-------------------HHHH----------HH
Confidence 654 56766532222 235677778888999999865543211 0011 35
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH-hCCCEEEEh
Q 014581 291 KVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL-LGANTVQVC 336 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~-aGAd~V~vg 336 (422)
.++++.+...+ ++.|++.|||. ++.+.+.+. +|+..+-.+
T Consensus 159 ~L~~lv~~a~~-----~i~Im~GgGv~-~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 159 NLKELVEQAKG-----RIEIMPGGGVR-AENVPELVEETGVREIHGS 199 (201)
T ss_dssp HHHHHHHHHTT-----SSEEEEESS---TTTHHHHHHHHT-SEEEET
T ss_pred HHHHHHHHcCC-----CcEEEecCCCC-HHHHHHHHHhhCCeEEeec
Confidence 56666655433 79999999996 778888887 898877653
No 295
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.97 E-value=0.047 Score=57.82 Aligned_cols=70 Identities=21% Similarity=0.133 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
+..+-++.|.++|+|.|++-- . .|.+ -..++.|+++++.++ +.+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~-~-----------------------~g~~-----~~~~~~i~~ik~~~p------~~~- 291 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS-S-----------------------QGDS-----IYQLEMIKYIKKTYP------ELD- 291 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC-C-----------------------CCCc-----HHHHHHHHHHHHhCC------CCc-
Confidence 456788999999999875432 1 1221 233567888887663 444
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+..|+|.|.+++..++.+|||+|.++
T Consensus 292 vi~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 292 VIGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred EEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 44678999999999999999999775
No 296
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=96.95 E-value=0.032 Score=56.05 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=63.0
Q ss_pred HHHHHHHHhhCCCCeEEEEeCC---------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHH
Q 014581 137 LKEFKQLKALYPDKILIASIME---------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLE 207 (422)
Q Consensus 137 l~~i~~~k~~~~~~pvi~si~~---------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~ 207 (422)
++.++.+|+..+..||.+-+.. +.+.+++.++++++++.|+|+|++..+...... .....
T Consensus 206 ~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----------~~~~~ 274 (338)
T cd02933 206 LEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----------EDQPP 274 (338)
T ss_pred HHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----------cccch
Confidence 3445566655533378876641 236788899999999999999998543222111 12233
Q ss_pred HHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcC-CCEEEEe
Q 014581 208 EVCGWINAKATVPVWAKMTPNITDITEPARVALRSG-SEGVSAI 250 (422)
Q Consensus 208 ~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~v~ 250 (422)
+..+.||+.+++||++= ..+. .+.++.+.+.| +|.|.+.
T Consensus 275 ~~~~~ik~~~~ipvi~~--G~i~--~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 275 DFLDFLRKAFKGPLIAA--GGYD--AESAEAALADGKADLVAFG 314 (338)
T ss_pred HHHHHHHHHcCCCEEEE--CCCC--HHHHHHHHHcCCCCEEEeC
Confidence 55666777779999883 4554 45566666655 8887544
No 297
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.94 E-value=0.01 Score=54.17 Aligned_cols=110 Identities=18% Similarity=0.144 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEE--EEEC-C----CCCChHHHHHH
Q 014581 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW--AKMT-P----NITDITEPARV 238 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~--vKl~-~----~~~~~~~~a~~ 238 (422)
..+|+.++..||.+|-+|- + +-++++|+.+++||+ +|-. + +++-..+-++.
T Consensus 2 ~~mA~Aa~~gGA~giR~~~---------------------~-~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~ 59 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG---------------------V-EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDA 59 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES---------------------H-HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHH
T ss_pred HHHHHHHHHCCceEEEcCC---------------------H-HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHH
Confidence 4577878888999998871 1 235678888899986 5642 1 12334677889
Q ss_pred HHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH-HHHHHHHHHHhhccCCCCCceEEEecCCC
Q 014581 239 ALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA-LGKVMSIAKMMKSEFNDKDYSLSGIGGVE 317 (422)
Q Consensus 239 l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a-l~~v~~i~~~~~~~~~~~~ipIIa~GGI~ 317 (422)
+.++|+|-|-+-.|...+ |.+ .+.++++++. . ......|.
T Consensus 60 l~~aGadIIAlDaT~R~R-----------------------------p~~l~~li~~i~~~--------~--~l~MADis 100 (192)
T PF04131_consen 60 LAEAGADIIALDATDRPR-----------------------------PETLEELIREIKEK--------Y--QLVMADIS 100 (192)
T ss_dssp HHHCT-SEEEEE-SSSS------------------------------SS-HHHHHHHHHHC--------T--SEEEEE-S
T ss_pred HHHcCCCEEEEecCCCCC-----------------------------CcCHHHHHHHHHHh--------C--cEEeeecC
Confidence 999999987655544321 111 2455556553 2 55566799
Q ss_pred CHHHHHHHHHhCCCEEEEh
Q 014581 318 TGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 318 s~~da~~~l~aGAd~V~vg 336 (422)
|.+|++.+..+|+|.|.--
T Consensus 101 t~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 101 TLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp SHHHHHHHHHTT-SEEE-T
T ss_pred CHHHHHHHHHcCCCEEEcc
Confidence 9999999999999988754
No 298
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.88 E-value=0.037 Score=55.79 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhCC-CCeEEEEeCC------CCCHHHHHHHHHHHHHhC-CCEEEEccCCCCCCCc-cccccccccChhH
Q 014581 135 TMLKEFKQLKALYP-DKILIASIME------EYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPE-RKMGAAVGQDCRL 205 (422)
Q Consensus 135 ~~l~~i~~~k~~~~-~~pvi~si~~------~~~~~~~~~~a~~~~~aG-aD~iElN~scP~~~~~-~~~G~~l~~~~~~ 205 (422)
-.++.++.+++..+ +.+|.+-+.. +.+.++..+++++++++| +|+|++..+.-..... ...-.........
T Consensus 193 ~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 272 (343)
T cd04734 193 FLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGP 272 (343)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcch
Confidence 34445666666552 4567776642 246788899999999998 8999986432111000 0000000011122
Q ss_pred HHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 206 LEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 206 v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
..+.++.+|+.+++||++ +.++.+.....+.+.+.++|+|.+.
T Consensus 273 ~~~~~~~ik~~~~ipvi~--~G~i~~~~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 273 FLPLAARIKQAVDLPVFH--AGRIRDPAEAEQALAAGHADMVGMT 315 (343)
T ss_pred hHHHHHHHHHHcCCCEEe--eCCCCCHHHHHHHHHcCCCCeeeec
Confidence 345677788888999987 4555555544444444558887543
No 299
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.87 E-value=0.048 Score=52.79 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=75.2
Q ss_pred HHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEE
Q 014581 168 LIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGV 247 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi 247 (422)
-|+.++++||-++-.==--|... ....|-+=.++++.++ +|++.+++||+-|+.-+. ..-++.+.++|+|.|
T Consensus 20 qa~~ae~aga~~v~~~~~~~~~~-~~~~~v~R~~~~~~I~----~Ik~~V~iPVIGi~K~~~---~~Ea~~L~eaGvDiI 91 (283)
T cd04727 20 QARIAEEAGAVAVMALERVPADI-RAAGGVARMADPKMIK----EIMDAVSIPVMAKVRIGH---FVEAQILEALGVDMI 91 (283)
T ss_pred HHHHHHHcCceEEeeeccCchhh-hhcCCeeecCCHHHHH----HHHHhCCCCeEEeeehhH---HHHHHHHHHcCCCEE
Confidence 36778888976654422234321 1122333345666554 455556999998776543 456889999999988
Q ss_pred EEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH
Q 014581 248 SAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL 327 (422)
Q Consensus 248 ~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~ 327 (422)
..+.+ + +| .-+.+..++..+ +.|+ ..|+.|.++++.+..
T Consensus 92 DaT~r-------------~------------------rP-~~~~~~~iK~~~-------~~l~--MAD~stleEal~a~~ 130 (283)
T cd04727 92 DESEV-------------L------------------TP-ADEEHHIDKHKF-------KVPF--VCGARNLGEALRRIS 130 (283)
T ss_pred eccCC-------------C------------------Cc-HHHHHHHHHHHc-------CCcE--EccCCCHHHHHHHHH
Confidence 42221 1 12 124555666543 3444 568999999999999
Q ss_pred hCCCEEEEh
Q 014581 328 LGANTVQVC 336 (422)
Q Consensus 328 aGAd~V~vg 336 (422)
+|||.|.--
T Consensus 131 ~Gad~I~TT 139 (283)
T cd04727 131 EGAAMIRTK 139 (283)
T ss_pred CCCCEEEec
Confidence 999987643
No 300
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.86 E-value=0.15 Score=49.45 Aligned_cols=146 Identities=19% Similarity=0.159 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
++-++.+++.++++ +.|++..+. +.+. ++.+.+. +|++.|--. ...+.+.++ ++
T Consensus 75 ~~gl~~l~~~~~~~-Gl~~~t~~~---d~~~----~~~l~~~-~d~lkI~s~-------------~~~n~~LL~----~~ 128 (260)
T TIGR01361 75 EEGLKLLRRAADEH-GLPVVTEVM---DPRD----VEIVAEY-ADILQIGAR-------------NMQNFELLK----EV 128 (260)
T ss_pred HHHHHHHHHHHHHh-CCCEEEeeC---Chhh----HHHHHhh-CCEEEECcc-------------cccCHHHHH----HH
Confidence 45556677777665 889999996 2333 2334444 788876421 123344443 33
Q ss_pred hhccCccEEEEECCC--CCChHHHHHHHHHcCCCEEEEecC-CcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHH
Q 014581 214 NAKATVPVWAKMTPN--ITDITEPARVALRSGSEGVSAINT-IMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALG 290 (422)
Q Consensus 214 r~~~~iPv~vKl~~~--~~~~~~~a~~l~~aGadgi~v~n~-~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~ 290 (422)
.+ +++||++|-... +.++...++.+.+.|.+-|++.-+ +.. +.+ .......++
T Consensus 129 a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~--------------------y~~---~~~~~~dl~ 184 (260)
T TIGR01361 129 GK-QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRT--------------------FEK---ATRNTLDLS 184 (260)
T ss_pred hc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCC--------------------CCC---CCcCCcCHH
Confidence 22 489999997643 445677788888899877776543 211 000 000123467
Q ss_pred HHHHHHHHhhccCCCCCceEEE----ecCCCC--HHHHHHHHHhCCCEEEEh
Q 014581 291 KVMSIAKMMKSEFNDKDYSLSG----IGGVET--GGDAAEFILLGANTVQVC 336 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipIIa----~GGI~s--~~da~~~l~aGAd~V~vg 336 (422)
.+..+++.. ++||+. ++|.++ ..-++.++.+||+++++=
T Consensus 185 ~i~~lk~~~-------~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE 229 (260)
T TIGR01361 185 AVPVLKKET-------HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIE 229 (260)
T ss_pred HHHHHHHhh-------CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEE
Confidence 777787765 689999 444222 455667889999976654
No 301
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.83 E-value=0.048 Score=54.69 Aligned_cols=107 Identities=26% Similarity=0.307 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhCC-CCeEEEEeC------CCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHH
Q 014581 134 ETMLKEFKQLKALYP-DKILIASIM------EEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 206 (422)
Q Consensus 134 e~~l~~i~~~k~~~~-~~pvi~si~------~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v 206 (422)
+..++.++.+++..+ +.||.+-+. .+.+.++..++++.+++.|+|+|++..+......... + .+...
T Consensus 205 rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~----~--~~~~~ 278 (336)
T cd02932 205 RFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIP----V--GPGYQ 278 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccC----C--Ccccc
Confidence 344556667776653 678888764 3457888999999999999999998754321100000 0 01112
Q ss_pred HHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcC-CCEEEE
Q 014581 207 EEVCGWINAKATVPVWAKMTPNITDITEPARVALRSG-SEGVSA 249 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~v 249 (422)
.+..+.+++.+++||++ ...+.+.. .++.+.+.| +|.|.+
T Consensus 279 ~~~~~~ir~~~~iPVi~--~G~i~t~~-~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 279 VPFAERIRQEAGIPVIA--VGLITDPE-QAEAILESGRADLVAL 319 (336)
T ss_pred HHHHHHHHhhCCCCEEE--eCCCCCHH-HHHHHHHcCCCCeehh
Confidence 24556677777999986 34454544 455556666 787743
No 302
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.78 E-value=0.023 Score=53.40 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCH-HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNK-AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~-~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.+...+.++.+++.. +.|+.+-+..+.+. +++.++++.+++.|+|+|.++-..... .+.. ..+ .+.++
T Consensus 108 ~~~~~eii~~v~~~~-~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~----~~~~--~~~----~~~~~ 176 (231)
T cd02801 108 PELVAEIVRAVREAV-PIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ----RYSG--PAD----WDYIA 176 (231)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHH----cCCC--CCC----HHHHH
Confidence 344555666666654 35777655433333 378899999999999999886421110 0000 112 24456
Q ss_pred HHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 212 WINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.+++.+++||++ ..++.+.....+.+...|+|+|.+.
T Consensus 177 ~i~~~~~ipvi~--~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 177 EIKEAVSIPVIA--NGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHhCCCCeEEE--eCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 677777899887 4556565555555544589998654
No 303
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.77 E-value=0.058 Score=57.17 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEe
Q 014581 234 EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI 313 (422)
Q Consensus 234 ~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~ 313 (422)
+-+..+.+.|+|+|.+.--+.. .+ +| + . .|..++.++++.+.. ++||++.
T Consensus 401 ~e~~~a~~~gadyi~~gpif~t------~t-k~----------~-~-----~~~g~~~~~~~~~~~-------~~Pv~ai 450 (502)
T PLN02898 401 EQAEQAWKDGADYIGCGGVFPT------NT-KA----------N-N-----KTIGLDGLREVCEAS-------KLPVVAI 450 (502)
T ss_pred HHHHHHhhcCCCEEEECCeecC------CC-CC----------C-C-----CCCCHHHHHHHHHcC-------CCCEEEE
Confidence 3466777899999975422111 00 11 1 0 133456666676544 7999999
Q ss_pred cCCCCHHHHHHHHHhCCC---EEEEhhHHHhh
Q 014581 314 GGVETGGDAAEFILLGAN---TVQVCTGVMMH 342 (422)
Q Consensus 314 GGI~s~~da~~~l~aGAd---~V~vgtall~~ 342 (422)
|||. ++++.+++.+||+ +|.++++++..
T Consensus 451 GGI~-~~~~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 451 GGIS-ASNAASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred CCCC-HHHHHHHHHcCCCcCceEEEEeHHhcC
Confidence 9995 9999999999999 99999999854
No 304
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=96.74 E-value=0.42 Score=47.81 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
+++.+++.+..++. +.+++.+.+ +.+. ++.+++.|+|++.|-- .+ .++..+++++.+
T Consensus 75 ~e~~~~L~~~~~~~-Gi~~~stpf---d~~s----vd~l~~~~v~~~KIaS--~~-----------~~n~pLL~~~A~-- 131 (329)
T TIGR03569 75 EEDHRELKEYCESK-GIEFLSTPF---DLES----ADFLEDLGVPRFKIPS--GE-----------ITNAPLLKKIAR-- 131 (329)
T ss_pred HHHHHHHHHHHHHh-CCcEEEEeC---CHHH----HHHHHhcCCCEEEECc--cc-----------ccCHHHHHHHHh--
Confidence 44555565555544 788888886 3332 3556667899998752 11 134445554443
Q ss_pred hhccCccEEEEECCC-CCChHHHHHHHHHcCCC---EEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 214 NAKATVPVWAKMTPN-ITDITEPARVALRSGSE---GVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 214 r~~~~iPv~vKl~~~-~~~~~~~a~~l~~aGad---gi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
+++||++|.... +.++...++.+.+.|.. -+.++-+..- |.+ ....-|
T Consensus 132 ---~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~Y----------P~~---------------~~~~nL 183 (329)
T TIGR03569 132 ---FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEY----------PAP---------------FEDVNL 183 (329)
T ss_pred ---cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCC----------CCC---------------cccCCH
Confidence 389999996542 22456666777888875 3344433210 110 012336
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh--h--------hHHHHHHHHHHHHHHH
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH--G--------YGLVKRLCEELKDFMK 359 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~--G--------p~~i~~i~~~l~~~m~ 359 (422)
+.|..+++.+ ++||..++=-....-.+.++.+||+.+...--+=+. | |.-++++.++++..-.
T Consensus 184 ~~I~~Lk~~f-------~~pVG~SdHt~G~~~~~aAvalGA~iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~ 256 (329)
T TIGR03569 184 NAMDTLKEAF-------DLPVGYSDHTLGIEAPIAAVALGATVIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEK 256 (329)
T ss_pred HHHHHHHHHh-------CCCEEECCCCccHHHHHHHHHcCCCEEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHH
Confidence 7778888776 688887643333445566778999988877433321 1 5557777777765443
Q ss_pred Hc
Q 014581 360 MH 361 (422)
Q Consensus 360 ~~ 361 (422)
..
T Consensus 257 ~l 258 (329)
T TIGR03569 257 AL 258 (329)
T ss_pred Hc
Confidence 33
No 305
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.74 E-value=0.043 Score=54.83 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=78.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN 228 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~ 228 (422)
+.||+.+=|.+.+.. +++..+.++|.=++- +-+ ..++...+.++.+|+. +.+-....
T Consensus 34 ~~Piv~apM~~vt~~---~ma~ava~~GglGvi-~~~---------------~~~~~~~~~i~~vk~~----l~v~~~~~ 90 (325)
T cd00381 34 NIPLVSAPMDTVTES---EMAIAMARLGGIGVI-HRN---------------MSIEEQAEEVRKVKGR----LLVGAAVG 90 (325)
T ss_pred CCCEEecCCCcCCcH---HHHHHHHHCCCEEEE-eCC---------------CCHHHHHHHHHHhccC----ceEEEecC
Confidence 568887666443333 345555566654432 111 1224455566666532 22222221
Q ss_pred C-CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCC
Q 014581 229 I-TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKD 307 (422)
Q Consensus 229 ~-~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ 307 (422)
. .+..+.++.+.++|++.|.+.-+.. .+ +...+.|+++++..+ +
T Consensus 91 ~~~~~~~~~~~l~eagv~~I~vd~~~G------------------------~~-----~~~~~~i~~ik~~~p------~ 135 (325)
T cd00381 91 TREDDKERAEALVEAGVDVIVIDSAHG------------------------HS-----VYVIEMIKFIKKKYP------N 135 (325)
T ss_pred CChhHHHHHHHHHhcCCCEEEEECCCC------------------------Cc-----HHHHHHHHHHHHHCC------C
Confidence 1 2456788899999999887543211 10 223466777777642 5
Q ss_pred ceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 308 YSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 308 ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
++|++ |.+.+.+++.+++.+|||+|.++
T Consensus 136 v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 136 VDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred ceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 88887 99999999999999999999873
No 306
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.70 E-value=0.012 Score=55.57 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=65.4
Q ss_pred CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCc
Q 014581 229 ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDY 308 (422)
Q Consensus 229 ~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~i 308 (422)
..++.++|+.+.+.|++.+.+.. ++..+ | ++.-++.|+++++ .+
T Consensus 35 ~~dP~~~a~~~~~~g~~~l~ivD---------Ld~~~---------------~---~~~n~~~i~~i~~---------~~ 78 (221)
T TIGR00734 35 SSSPDDAAKVIEEIGARFIYIAD---------LDRIV---------------G---LGDNFSLLSKLSK---------RV 78 (221)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEE---------ccccc---------------C---CcchHHHHHHHHh---------hC
Confidence 34789999999999999998764 22110 1 1233566777766 35
Q ss_pred eEEEecCCCCHHHHHHHHH--hCCCEEEEhhHHHhhhhHHHHHHH
Q 014581 309 SLSGIGGVETGGDAAEFIL--LGANTVQVCTGVMMHGYGLVKRLC 351 (422)
Q Consensus 309 pIIa~GGI~s~~da~~~l~--aGAd~V~vgtall~~Gp~~i~~i~ 351 (422)
|+...|||+|.+|+.+++. .||+-|.++|..+.+ |.+++++.
T Consensus 79 ~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~-p~~l~~~~ 122 (221)
T TIGR00734 79 ELIADCGVRSPEDLETLPFTLEFASRVVVATETLDI-TELLRECY 122 (221)
T ss_pred cEEEcCccCCHHHHHHHHhhhccceEEeecChhhCC-HHHHHHhh
Confidence 8999999999999999975 379999999999988 88877654
No 307
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.69 E-value=0.1 Score=51.19 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE-ccC-CC--CCCC-----cccccccccc-C
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEV-NFS-CP--HGMP-----ERKMGAAVGQ-D 202 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iEl-N~s-cP--~~~~-----~~~~G~~l~~-~ 202 (422)
.+...+.++.+++.. +.||++-+. .+.++..++++.++++|+|+|.+ |.. .. +... ...+|..-+. .
T Consensus 139 ~~~~~eiv~~vr~~~-~~Pv~vKl~--~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 215 (296)
T cd04740 139 PEAVAEIVKAVKKAT-DVPVIVKLT--PNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAI 215 (296)
T ss_pred HHHHHHHHHHHHhcc-CCCEEEEeC--CCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCccc
Confidence 344455566676654 789999885 34457889999999999999876 321 11 1000 0011111111 1
Q ss_pred hhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 203 CRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.....+.++.+++.+++||+. ...+.+... +..+.++|||+|.+.
T Consensus 216 ~~~~~~~i~~i~~~~~ipii~--~GGI~~~~d-a~~~l~~GAd~V~ig 260 (296)
T cd04740 216 KPIALRMVYQVYKAVEIPIIG--VGGIASGED-ALEFLMAGASAVQVG 260 (296)
T ss_pred chHHHHHHHHHHHhcCCCEEE--ECCCCCHHH-HHHHHHcCCCEEEEc
Confidence 122445667777777899886 455656544 445557999998665
No 308
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.68 E-value=0.15 Score=53.88 Aligned_cols=69 Identities=25% Similarity=0.250 Sum_probs=49.8
Q ss_pred hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEE
Q 014581 232 ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLS 311 (422)
Q Consensus 232 ~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipII 311 (422)
..+.++.+.++|++.|++-.+ .+ .+ ...++.++.+++.++ ++|||
T Consensus 229 ~~e~a~~L~~agvdvivvD~a-~g-----------------------~~-----~~vl~~i~~i~~~~p------~~~vi 273 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTA-HG-----------------------HS-----EGVLDRVREIKAKYP------DVQII 273 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECC-CC-----------------------cc-----hhHHHHHHHHHhhCC------CCCEE
Confidence 467888999999996643221 11 00 112456677776653 68888
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 312 GIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 312 a~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+ |+|.|.+++.+++.+|||+|.+|
T Consensus 274 ~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 274 A-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred E-eccCCHHHHHHHHHcCCCEEEEC
Confidence 8 89999999999999999999775
No 309
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.68 E-value=0.043 Score=52.09 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=83.5
Q ss_pred HHHHHhhCCCCeEEEEeCC---CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 140 FKQLKALYPDKILIASIME---EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~---~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
++.+++. +.++++-+.- +.+++. +++.+.++|+|++.+|...+ .+.+++..+..++.
T Consensus 46 i~~l~~~--~~~i~~D~Kl~Di~~t~~~---~i~~~~~~gad~itvH~~ag---------------~~~i~~~~~~~~~~ 105 (230)
T PRK00230 46 VRELKQR--GFKVFLDLKLHDIPNTVAK---AVRALAKLGVDMVNVHASGG---------------PRMMKAAREALEPK 105 (230)
T ss_pred HHHHHhc--CCCEEEEeehhhccccHHH---HHHHHHHcCCCEEEEcccCC---------------HHHHHHHHHHhhcc
Confidence 4455543 4567766642 223443 45556678999999996422 23455555554432
Q ss_pred c-CccEEE-EECCCC-C-------------ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCC
Q 014581 217 A-TVPVWA-KMTPNI-T-------------DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYS 280 (422)
Q Consensus 217 ~-~iPv~v-Kl~~~~-~-------------~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~s 280 (422)
. ..-+.| -|+..- . .+...++.+.+.|+|++++..+
T Consensus 106 ~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~---------------------------- 157 (230)
T PRK00230 106 SRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ---------------------------- 157 (230)
T ss_pred CCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH----------------------------
Confidence 1 112222 233210 0 0224456667788888865421
Q ss_pred CCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHH-----------HHHHHHHhCCCEEEEhhHHHhh--hhHHH
Q 014581 281 CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGG-----------DAAEFILLGANTVQVCTGVMMH--GYGLV 347 (422)
Q Consensus 281 G~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~-----------da~~~l~aGAd~V~vgtall~~--Gp~~i 347 (422)
-+..+++.++ +-.++.++||. ++ ...+++.+||+.|.+||+++.. ....+
T Consensus 158 ----------~~~~ir~~~~------~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a 220 (230)
T PRK00230 158 ----------EAAAIREATG------PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAY 220 (230)
T ss_pred ----------HHHHHHhhcC------CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHH
Confidence 1223455443 23357778886 33 5778888999999999999875 22345
Q ss_pred HHHHHHH
Q 014581 348 KRLCEEL 354 (422)
Q Consensus 348 ~~i~~~l 354 (422)
+++.+++
T Consensus 221 ~~i~~~i 227 (230)
T PRK00230 221 EAILAEI 227 (230)
T ss_pred HHHHHHh
Confidence 5555544
No 310
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.65 E-value=0.033 Score=52.93 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
++...+.++.+++ . +.||.+=+..+.+..+..++++.++++|+|+|-++..-| | . +..-.+.++.
T Consensus 120 p~~l~~iv~av~~-~-~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~--------g----~-~~a~~~~I~~ 184 (231)
T TIGR00736 120 KELLKEFLTKMKE-L-NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYP--------G----K-PYADMDLLKI 184 (231)
T ss_pred HHHHHHHHHHHHc-C-CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCC--------C----C-chhhHHHHHH
Confidence 4555555666664 3 789999887545556778999999999999998862111 1 0 1133566777
Q ss_pred Hhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 213 INAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 213 vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
+++.+ ++||+. +.++.+.....+.+ +.|+|+|.+.
T Consensus 185 i~~~~~~ipIIg--NGgI~s~eda~e~l-~~GAd~Vmvg 220 (231)
T TIGR00736 185 LSEEFNDKIIIG--NNSIDDIESAKEML-KAGADFVSVA 220 (231)
T ss_pred HHHhcCCCcEEE--ECCcCCHHHHHHHH-HhCCCeEEEc
Confidence 77777 499886 46666655544444 5899999654
No 311
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=96.63 E-value=0.28 Score=47.38 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
.||.+-... ++-..+.+.++|+-++-+++-- + ...+|+++-. +-++++++
T Consensus 15 ~~i~m~tay---D~~sA~i~~~aG~d~ilvGdSl------g------------------m~~lG~~~t~---~vtldem~ 64 (263)
T TIGR00222 15 EKIVAITAY---DYSFAKLFADAGVDVILVGDSL------G------------------MVVLGHDSTL---PVTVADMI 64 (263)
T ss_pred CcEEEEecc---CHHHHHHHHHcCCCEEEECccH------h------------------HHhcCCCCCC---CcCHHHHH
Confidence 466554434 4666777778999988876321 1 1223444322 23488888
Q ss_pred HHHHHHHhhCCCCeEEE-EeCC-CC-CHHHHHHHHH-HHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 138 KEFKQLKALYPDKILIA-SIME-EY-NKAAWEELID-RVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~-si~~-~~-~~~~~~~~a~-~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
...+.+.+..+ .|+++ .+-. ++ ++++..+-+. .++++|++++-|-=+ ....+.++.+
T Consensus 65 ~h~~aV~rg~~-~~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg------------------~~~~~~i~~l 125 (263)
T TIGR00222 65 YHTAAVKRGAP-NCLIVTDLPFMSYATPEQALKNAARVMQETGANAVKLEGG------------------EWLVETVQML 125 (263)
T ss_pred HHHHHHHhhCC-CceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HhHHHHHHHH
Confidence 88888887653 44443 3321 23 4555555454 455699999976521 1233444554
Q ss_pred hhccCccEE---------EEECCCC-----C-----ChHHHHHHHHHcCCCEEEEe
Q 014581 214 NAKATVPVW---------AKMTPNI-----T-----DITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 214 r~~~~iPv~---------vKl~~~~-----~-----~~~~~a~~l~~aGadgi~v~ 250 (422)
.+. .+||+ +..-.++ + .+.+-|++++++||++|++-
T Consensus 126 ~~~-gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 126 TER-GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLE 180 (263)
T ss_pred HHC-CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 443 78888 4322211 1 24566788999999999754
No 312
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.60 E-value=0.07 Score=51.71 Aligned_cols=130 Identities=20% Similarity=0.180 Sum_probs=82.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT 230 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~ 230 (422)
=||.-+. +++. |+.++++||-++--==--|.. .....|-+=.++|+.+++|.+ .+++||+.|..-+.
T Consensus 12 gvimdv~---~~eq----a~iae~aga~avm~le~~p~d-~r~~ggv~R~~~p~~I~~I~~----~V~iPVig~~kigh- 78 (287)
T TIGR00343 12 GVIMDVV---NPEQ----AKIAEEAGAVAVMALERVPAD-IRASGGVARMSDPKMIKEIMD----AVSIPVMAKVRIGH- 78 (287)
T ss_pred CeEEEeC---CHHH----HHHHHHcCceEEEeeccCchh-hHhcCCeeecCCHHHHHHHHH----hCCCCEEEEeeccH-
Confidence 3666664 3443 677888897665332123332 122345555678877665555 45999999887653
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
..-|+.|.++|+|.|..+.+. +| +-+.+..+++.+ ++|
T Consensus 79 --~~Ea~~L~~~GvDiIDeTe~l-------------------------------rP-ade~~~~~K~~f-------~vp- 116 (287)
T TIGR00343 79 --FVEAQILEALGVDYIDESEVL-------------------------------TP-ADWTFHIDKKKF-------KVP- 116 (287)
T ss_pred --HHHHHHHHHcCCCEEEccCCC-------------------------------Cc-HHHHHHHHHHHc-------CCC-
Confidence 445889999999988433221 12 123444455443 344
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
...|++|.++++.++..|||.|.--
T Consensus 117 -fmad~~~l~EAlrai~~GadmI~Tt 141 (287)
T TIGR00343 117 -FVCGARDLGEALRRINEGAAMIRTK 141 (287)
T ss_pred -EEccCCCHHHHHHHHHCCCCEEecc
Confidence 4569999999999999999987654
No 313
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.58 E-value=0.13 Score=49.22 Aligned_cols=185 Identities=14% Similarity=0.108 Sum_probs=102.9
Q ss_pred HHHHHHhCCCEEEEccCCCC-CCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC---hHHHHHHHHHcCC
Q 014581 169 IDRVEETGIDAIEVNFSCPH-GMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD---ITEPARVALRSGS 244 (422)
Q Consensus 169 a~~~~~aGaD~iElN~scP~-~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~aGa 244 (422)
|+.++++|+|++=+.=+.-. .....+.+ .-..+.+.+.++.|...+++|+++-+...+.+ ..+.++.+.++|+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~---~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGG---LLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCC---cCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 57778889999987522111 00001100 12345666677777777799999988765544 5566888899999
Q ss_pred CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH--HHHHHHHHHHhhccCCCCCceEEEe-----cCCC
Q 014581 245 EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA--LGKVMSIAKMMKSEFNDKDYSLSGI-----GGVE 317 (422)
Q Consensus 245 dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a--l~~v~~i~~~~~~~~~~~~ipIIa~-----GGI~ 317 (422)
++|.+-+..... ..|.+.|..+.+.. .+.|+.++++..+. .+++|++- -|-.
T Consensus 99 ~gv~iED~~~~k------------------~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~---~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 99 AGIHIEDQVGPK------------------KCGHHGGKVLVPIEEFVAKIKAARDARDDL---PDFVIIARTDALLAGEE 157 (243)
T ss_pred EEEEEecCCCCc------------------cccCCCCCeecCHHHHHHHHHHHHHHHhcc---CCeEEEEEcCchhccCC
Confidence 999876543210 01222233333322 23344444443321 26888887 3323
Q ss_pred CHHHHHH----HHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHH---HHHcCC--CCHHHhhcCCcccCCCh
Q 014581 318 TGGDAAE----FILLGANTVQVCTGVMMHGYGLVKRLCEELKDF---MKMHNF--SSIEDFRGASIEYFTTH 380 (422)
Q Consensus 318 s~~da~~----~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~---m~~~G~--~si~d~~G~~~~~~~~~ 380 (422)
+.+++++ |..+|||+|.+-... . +..++++.+.+... +-..+. -+++|+.-.....+.-.
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~--~-~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~ 226 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLK--D-PEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYG 226 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC--C-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEC
Confidence 4455544 456899999997543 2 46666666653211 112223 46777766555554433
No 314
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.57 E-value=0.016 Score=54.61 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=62.8
Q ss_pred HHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 209 VCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 209 iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
+++.+.+.-=+||+.-. +.++..++++.+.+.|+..+-++-++ |.+
T Consensus 8 ~~~~l~~~~vi~Vvr~~--~~~~a~~~~~al~~gGi~~iEiT~~t--------------------------------p~a 53 (222)
T PRK07114 8 VLTAMKATGMVPVFYHA--DVEVAKKVIKACYDGGARVFEFTNRG--------------------------------DFA 53 (222)
T ss_pred HHHHHHhCCEEEEEEcC--CHHHHHHHHHHHHHCCCCEEEEeCCC--------------------------------CcH
Confidence 44444443335554422 23457889999999999999888654 234
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEE
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQ 334 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~ 334 (422)
++.++++++.+.++++ ++ ++|.|-|.|.+++.+++.+||+.+.
T Consensus 54 ~~~i~~l~~~~~~~~p--~~-~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 54 HEVFAELVKYAAKELP--GM-ILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred HHHHHHHHHHHHhhCC--Ce-EEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 5677777765543322 33 8999999999999999999999877
No 315
>PLN02591 tryptophan synthase
Probab=96.56 E-value=0.04 Score=53.00 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=99.6
Q ss_pred cCCCCCC--CHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHH
Q 014581 63 GSGPPGT--NYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEF 140 (422)
Q Consensus 63 AAg~~~~--~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i 140 (422)
.+|.++. +.+.++.+.+.|+.+++++-=+.+|-- .-|.+.+. ... .|.| ...++..++.+
T Consensus 9 ~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~a---DGpvIq~a--------~~r--AL~~-----G~~~~~~~~~~ 70 (250)
T PLN02591 9 TAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLA---DGPVIQAA--------ATR--ALEK-----GTTLDSVISML 70 (250)
T ss_pred eCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcc---cCHHHHHH--------HHH--HHHc-----CCCHHHHHHHH
Confidence 3455432 456677888899999999977766521 11322210 000 1111 12367888888
Q ss_pred HHHHhhCCCCeEEEEeCCCCCH---HHHHHHHHHHHHhCCCEEEEc-----------------------cCCCCCCCcc-
Q 014581 141 KQLKALYPDKILIASIMEEYNK---AAWEELIDRVEETGIDAIEVN-----------------------FSCPHGMPER- 193 (422)
Q Consensus 141 ~~~k~~~~~~pvi~si~~~~~~---~~~~~~a~~~~~aGaD~iElN-----------------------~scP~~~~~~- 193 (422)
+++++. .+.|++ ++.-+++ -...++.+.+.++|+|++-+. +-.|++...|
T Consensus 71 ~~~r~~-~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri 147 (250)
T PLN02591 71 KEVAPQ-LSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERM 147 (250)
T ss_pred HHHhcC-CCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Confidence 888865 477876 4421222 123456667777888887773 1236553221
Q ss_pred --------c-------cccc--cccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecC
Q 014581 194 --------K-------MGAA--VGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINT 252 (422)
Q Consensus 194 --------~-------~G~~--l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~ 252 (422)
+ +|.. -...++.+.+.++.+|+.+++||++- -.+.+ .+-++.+.+.|+||+++...
T Consensus 148 ~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG--FGI~~-~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 148 KAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG--FGISK-PEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred HHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe--CCCCC-HHHHHHHHhcCCCEEEECHH
Confidence 1 1111 11346778899999999999999983 33333 55677899999999977643
No 316
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.54 E-value=0.031 Score=56.10 Aligned_cols=173 Identities=15% Similarity=0.162 Sum_probs=96.7
Q ss_pred HHHHHHhCCCEEEEccCC-CCCCCccccccccccChhHHHHHHHHHhhccCccEEEEE-CCCC------------CC---
Q 014581 169 IDRVEETGIDAIEVNFSC-PHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM-TPNI------------TD--- 231 (422)
Q Consensus 169 a~~~~~aGaD~iElN~sc-P~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl-~~~~------------~~--- 231 (422)
++.+.+.|+|++-+.+.. |.....-+ ....+.+.++.++.++. ++|+++=+ +... .+
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~-----~~~~~~l~rv~~ec~~~-giPlllE~l~y~~~~~~~~~~~~a~~~p~~ 185 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAIN-----DRKHAFVERVGAECRAN-DIPFFLEPLTYDGKGSDKKAEEFAKVKPEK 185 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHH-----HHHHHHHHHHHHHHHHc-CCceEEEEeccCCCccccccccccccCHHH
Confidence 455667799999888642 22110000 01223345555544433 89988853 2111 11
Q ss_pred hHHHHHHHHH--cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc--hhHHHHHHHHHHHhhccCCCCC
Q 014581 232 ITEPARVALR--SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH--PIALGKVMSIAKMMKSEFNDKD 307 (422)
Q Consensus 232 ~~~~a~~l~~--aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~--p~al~~v~~i~~~~~~~~~~~~ 307 (422)
+...++.+.+ .|+|-+.+--+... .. ++|+. .|..++ ..+.+..+++.+.. +
T Consensus 186 V~~a~r~~~~~elGaDvlKve~p~~~------~~------veg~~-----~~~~~~~~~~~~~~f~~~~~a~-------~ 241 (340)
T PRK12858 186 VIKTMEEFSKPRYGVDVLKVEVPVDM------KF------VEGFD-----GFEEAYTQEEAFKLFREQSDAT-------D 241 (340)
T ss_pred HHHHHHHHhhhccCCeEEEeeCCCCc------cc------ccccc-----cccccccHHHHHHHHHHHHhhC-------C
Confidence 3455666674 99988866433211 00 01110 011111 11233444555543 5
Q ss_pred ceEE-EecCCCCHHHHHHHH----HhCC--CEEEEhhHHHhhhhHHH-HHHHHHHHHHHHHcCCCCHHHhhcC
Q 014581 308 YSLS-GIGGVETGGDAAEFI----LLGA--NTVQVCTGVMMHGYGLV-KRLCEELKDFMKMHNFSSIEDFRGA 372 (422)
Q Consensus 308 ipII-a~GGI~s~~da~~~l----~aGA--d~V~vgtall~~Gp~~i-~~i~~~l~~~m~~~G~~si~d~~G~ 372 (422)
+|+| .+||+ +.+++.+.+ .+|| ++|.+||.+..++...+ ..=.+..++||...|..+|+++--.
T Consensus 242 ~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~~g~~~~~~l~~v 313 (340)
T PRK12858 242 LPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNTEGVANITRLNEV 313 (340)
T ss_pred CCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 6755 48887 667666654 5799 99999999998865442 2234667899999999999887543
No 317
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.52 E-value=0.25 Score=49.08 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=88.8
Q ss_pred CCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 58 NPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 58 nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
.||.+-... ++...+.+.++|+-++-++.-.. ...+|+.+-. +-++|+++
T Consensus 35 ~kivmlTAy---D~~sA~i~d~aGvD~ILVGDSlg------------------------mv~lG~~~T~---~Vtld~mi 84 (332)
T PLN02424 35 EPITMVTAY---DYPSAVHVDSAGIDVCLVGDSAA------------------------MVVHGHDTTL---PITLDEML 84 (332)
T ss_pred CcEEEEecC---CHHHHHHHHHcCCCEEEECCcHH------------------------HHhcCCCCCC---CcCHHHHH
Confidence 577766544 46667777789999888764221 1223433322 23488888
Q ss_pred HHHHHHHhhCCCCeEEE-EeCCC-C--CHHHHHHHHHHH-HHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 138 KEFKQLKALYPDKILIA-SIMEE-Y--NKAAWEELIDRV-EETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~-si~~~-~--~~~~~~~~a~~~-~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
...+.+++.. ..|+++ -+-.+ | ++++..+.|.++ .++|+++|-|-=+. ....+++++
T Consensus 85 ~H~~aV~Rga-~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~-----------------~~~~~~I~~ 146 (332)
T PLN02424 85 VHCRAVARGA-NRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS-----------------PSRVTAAKA 146 (332)
T ss_pred HHHHHHhccC-CCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc-----------------HHHHHHHHH
Confidence 8888887754 566665 44322 3 677777777666 67999999765210 112244444
Q ss_pred HhhccCccEEE--EECCCC------------C-----ChHHHHHHHHHcCCCEEEEec
Q 014581 213 INAKATVPVWA--KMTPNI------------T-----DITEPARVALRSGSEGVSAIN 251 (422)
Q Consensus 213 vr~~~~iPv~v--Kl~~~~------------~-----~~~~~a~~l~~aGadgi~v~n 251 (422)
+.+ ..+||+- -|+|.. + .+.+-|++++++|+++|++-.
T Consensus 147 l~~-~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 147 IVE-AGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLEC 203 (332)
T ss_pred HHH-cCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcC
Confidence 442 3899982 333321 0 245678889999999997653
No 318
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.50 E-value=0.07 Score=50.12 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC-----C--CChH
Q 014581 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN-----I--TDIT 233 (422)
Q Consensus 161 ~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~-----~--~~~~ 233 (422)
+.++..++++.+.++|+.+++++ + .+.++++++.+++|++..+.-+ + ....
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~-----~-----------------~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~ 78 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN-----G-----------------VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTL 78 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC-----C-----------------HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCH
Confidence 45778899999999999999863 0 2355667777799987444311 1 1234
Q ss_pred HHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEe
Q 014581 234 EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI 313 (422)
Q Consensus 234 ~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~ 313 (422)
+.++.+.++|+|.|++...... .| .+ ....++++.+++. . +++++.
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~---------~p----------~~-------~~~~~~i~~~~~~-~------~i~vi~- 124 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP---------RP----------DG-------ETLAELVKRIKEY-P------GQLLMA- 124 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC---------CC----------CC-------CCHHHHHHHHHhC-C------CCeEEE-
Confidence 5688999999997765532210 00 00 0112444444442 1 677774
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEh
Q 014581 314 GGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 314 GGI~s~~da~~~l~aGAd~V~vg 336 (422)
++.+.+++.++..+|+|.+.+.
T Consensus 125 -~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 125 -DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred -eCCCHHHHHHHHHcCCCEEEcC
Confidence 6889999999999999999764
No 319
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.50 E-value=0.025 Score=52.95 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
+..++|+...++||++|.+..- +. ..+| ..+.++.+++.. ++||
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~---------~~-----------~~~g---------~~~~~~~i~~~v-------~iPi 75 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTE---------PK-----------YFQG---------SLEDLRAVREAV-------SLPV 75 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeC---------cc-----------ccCC---------CHHHHHHHHHhc-------CCCE
Confidence 5789999999999999966531 11 0111 135666777765 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHH
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~ 352 (422)
+.-|+|.+.+++.+++.+|||+|.++...+. +..++++.+
T Consensus 76 ~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~--~~~~~~~~~ 115 (217)
T cd00331 76 LRKDFIIDPYQIYEARAAGADAVLLIVAALD--DEQLKELYE 115 (217)
T ss_pred EECCeecCHHHHHHHHHcCCCEEEEeeccCC--HHHHHHHHH
Confidence 9999999999999999999999999887653 234444433
No 320
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.50 E-value=0.3 Score=46.71 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=92.7
Q ss_pred HHHHHhhCCCCeEEEEeCC-----CCCHHHHHHH---HHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 140 FKQLKALYPDKILIASIME-----EYNKAAWEEL---IDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~-----~~~~~~~~~~---a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
++.+++.. +.|+.+=|.. .|+.+++..+ ++.+.+.|+|+|.+.+-.|.. .-|.+.++++++
T Consensus 43 i~~~~~~~-~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg----------~vD~~~~~~Li~ 111 (248)
T PRK11572 43 LKSVRERV-TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDG----------HVDMPRMRKIMA 111 (248)
T ss_pred HHHHHHhc-CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC----------CcCHHHHHHHHH
Confidence 33444433 6788877752 3677776554 456667899999998766653 135667777777
Q ss_pred HHhhccCccEEEEECCC-CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHH
Q 014581 212 WINAKATVPVWAKMTPN-ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALG 290 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~-~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~ 290 (422)
+.. +.|+..=-.-+ ..+..+..+.+.+.|++.|.-++.... + ...+.
T Consensus 112 ~a~---~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~---------------------------a--~~g~~ 159 (248)
T PRK11572 112 AAG---PLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQD---------------------------A--EQGLS 159 (248)
T ss_pred Hhc---CCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCC---------------------------H--HHHHH
Confidence 652 45664422222 235667778899999998853332110 0 11234
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhH
Q 014581 291 KVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgta 338 (422)
.++++.+... +.-|++.|||. .+.+.+...+|+..|.....
T Consensus 160 ~L~~lv~~a~------~~~Im~GgGV~-~~Nv~~l~~tG~~~~H~s~~ 200 (248)
T PRK11572 160 LIMELIAASD------GPIIMAGAGVR-LSNLHKFLDAGVREVHSSAG 200 (248)
T ss_pred HHHHHHHhcC------CCEEEeCCCCC-HHHHHHHHHcCCCEEeeCCC
Confidence 4555555432 33389999996 88888888899998886543
No 321
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.49 E-value=0.15 Score=50.15 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=104.4
Q ss_pred HHHHHHhCCCEEEEccC-CC-CCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCCh---HHHHHHHHHcC
Q 014581 169 IDRVEETGIDAIEVNFS-CP-HGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDI---TEPARVALRSG 243 (422)
Q Consensus 169 a~~~~~aGaD~iElN~s-cP-~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~---~~~a~~l~~aG 243 (422)
|+.++++|++++-+--+ +- ......+.| .-..+.+.+.++.|.+.+++||++=+-..+.+. .+.++.+.++|
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aG 106 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLG---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAG 106 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCC---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 56777889999976421 11 000011111 123345556666777778999999876655554 45588899999
Q ss_pred CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCC---CHH
Q 014581 244 SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVE---TGG 320 (422)
Q Consensus 244 adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~---s~~ 320 (422)
+.||.+-..... + ..|-+.|+.+.|.. +.+.+|+.+...+- +.++-|++=-... ..+
T Consensus 107 aagi~IEDq~~p------K------------~cg~~~~~~lv~~e-e~~~kI~Aa~~a~~-~~d~~IiARTDa~~~~g~d 166 (292)
T PRK11320 107 AAAVHIEDQVGA------K------------RCGHRPNKEIVSQE-EMVDRIKAAVDART-DPDFVIMARTDALAVEGLD 166 (292)
T ss_pred CeEEEEecCCCc------c------------ccCCCCCCcccCHH-HHHHHHHHHHHhcc-CCCeEEEEecCcccccCHH
Confidence 999977654321 0 01222344444443 45566655543221 1256666543332 244
Q ss_pred HH----HHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHH-----HHH--HHcCCCCHHHhhcCCcccCCCh
Q 014581 321 DA----AEFILLGANTVQVCTGVMMHGYGLVKRLCEELK-----DFM--KMHNFSSIEDFRGASIEYFTTH 380 (422)
Q Consensus 321 da----~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~-----~~m--~~~G~~si~d~~G~~~~~~~~~ 380 (422)
++ ..|..+|||+|.+-. +.. +..++++.+.+. ..+ ...+.-+++|+.-.....+.-.
T Consensus 167 eAI~Ra~aY~eAGAD~ifi~~--~~~-~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~ 234 (292)
T PRK11320 167 AAIERAQAYVEAGADMIFPEA--MTE-LEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYP 234 (292)
T ss_pred HHHHHHHHHHHcCCCEEEecC--CCC-HHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEC
Confidence 54 345578999999975 223 666777776653 111 1223347888876655555533
No 322
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.48 E-value=0.081 Score=47.99 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCC-----CChHHH
Q 014581 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNI-----TDITEP 235 (422)
Q Consensus 161 ~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~-----~~~~~~ 235 (422)
+.+.+.++++++.+.|+++|+++- +.++.+.+.+... ++|+++++.... .+..+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~~~ 70 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKVAE 70 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHHHH
Confidence 567888899999889999999872 2233333333221 589999997653 446788
Q ss_pred HHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEe--
Q 014581 236 ARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI-- 313 (422)
Q Consensus 236 a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~-- 313 (422)
++.+.++|+|++.+.......+ ++. .....+.++++++.+ + .++|++.-
T Consensus 71 a~~a~~~Gad~i~v~~~~~~~~----------------------~~~--~~~~~~~~~~i~~~~-~----~~~pv~iy~~ 121 (201)
T cd00945 71 VEEAIDLGADEIDVVINIGSLK----------------------EGD--WEEVLEEIAAVVEAA-D----GGLPLKVILE 121 (201)
T ss_pred HHHHHHcCCCEEEEeccHHHHh----------------------CCC--HHHHHHHHHHHHHHh-c----CCceEEEEEE
Confidence 9999999999998764332100 000 012235556666654 1 16777642
Q ss_pred cCCC-CHHHHHHH----HHhCCCEEEEhhH
Q 014581 314 GGVE-TGGDAAEF----ILLGANTVQVCTG 338 (422)
Q Consensus 314 GGI~-s~~da~~~----l~aGAd~V~vgta 338 (422)
-+-. +.+.+.+. ...|+++|-..++
T Consensus 122 p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 122 TRGLKTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 2223 67777664 3479999998876
No 323
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.47 E-value=0.051 Score=52.67 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=99.5
Q ss_pred cCCCCCC--CHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHH
Q 014581 63 GSGPPGT--NYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEF 140 (422)
Q Consensus 63 AAg~~~~--~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i 140 (422)
.+|.++. +.+.++.+.+.|+.+++++-=+.+|-- .-|.+.+. +.-.|.| ...++..++.+
T Consensus 22 ~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~a---DGpvIq~a----------~~rAL~~-----g~~~~~~~~~~ 83 (263)
T CHL00200 22 TAGDPDIVITKKALKILDKKGADIIELGIPYSDPLA---DGPIIQEA----------SNRALKQ-----GINLNKILSIL 83 (263)
T ss_pred eCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCc---cCHHHHHH----------HHHHHHc-----CCCHHHHHHHH
Confidence 3555432 456678888899999999977766521 11322211 0001111 12367788888
Q ss_pred HHHHhhCCCCeEEEEeCCCCCH---HHHHHHHHHHHHhCCCEEEEc-----------------------cCCCCCCCcc-
Q 014581 141 KQLKALYPDKILIASIMEEYNK---AAWEELIDRVEETGIDAIEVN-----------------------FSCPHGMPER- 193 (422)
Q Consensus 141 ~~~k~~~~~~pvi~si~~~~~~---~~~~~~a~~~~~aGaD~iElN-----------------------~scP~~~~~~- 193 (422)
+++++. ++.|++ ++.-+++ -...++.+.+.++|+|++-+. +-.|++..+|
T Consensus 84 ~~~r~~-~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri 160 (263)
T CHL00200 84 SEVNGE-IKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRI 160 (263)
T ss_pred HHHhcC-CCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 888865 477876 4421222 022345666677788888773 1245542111
Q ss_pred --------cc---------ccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCC
Q 014581 194 --------KM---------GAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 253 (422)
Q Consensus 194 --------~~---------G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~ 253 (422)
++ ++.-...++.+.++++.+|+.++.|+.|- -.+. ..+.++.+.++|+||+++...+
T Consensus 161 ~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vG--FGI~-~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 161 QKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILG--FGIS-TSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred HHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEE--CCcC-CHHHHHHHHhcCCCEEEECHHH
Confidence 00 11112345778899999999999999983 3333 3567888999999999876543
No 324
>PRK08185 hypothetical protein; Provisional
Probab=96.46 E-value=0.65 Score=45.51 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhh
Q 014581 136 MLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINA 215 (422)
Q Consensus 136 ~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~ 215 (422)
+...++.+.+++ +.||.+.+--+.+.+. ++++.+.|++.|-+.-|.-. ++.+.+..+++++..+.
T Consensus 56 ~~~~~~~~a~~~-~vPV~lHLDHg~~~e~----i~~ai~~Gf~SVM~D~S~l~----------~eeNi~~t~~vv~~a~~ 120 (283)
T PRK08185 56 FFAYVRERAKRS-PVPFVIHLDHGATIED----VMRAIRCGFTSVMIDGSLLP----------YEENVALTKEVVELAHK 120 (283)
T ss_pred HHHHHHHHHHHC-CCCEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCCCC----------HHHHHHHHHHHHHHHHH
Confidence 444455555544 7899999864444443 33344569999988865211 23344555566554443
Q ss_pred ccCccEEEEEC---C---C---------CCChHHHHHHHHHcCCCEEEEe-cCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 216 KATVPVWAKMT---P---N---------ITDITEPARVALRSGSEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 216 ~~~iPv~vKl~---~---~---------~~~~~~~a~~l~~aGadgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
. +++|=..+. . + ++++.+..+...+.|+|.+.+. ++..+ +-.. +
T Consensus 121 ~-gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG---~y~~--------------~-- 180 (283)
T PRK08185 121 V-GVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHG---IYPK--------------D-- 180 (283)
T ss_pred c-CCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccC---CcCC--------------C--
Confidence 2 555543331 1 0 3355554555555699999774 33221 1000 0
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC-HHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET-GGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s-~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+-| .+.++.++++++.+ ++|++.-||+.. -+|+.+++..|..=|=++|.+...
T Consensus 181 ~kp---~L~~e~l~~I~~~~-------~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a 234 (283)
T PRK08185 181 KKP---ELQMDLLKEINERV-------DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYA 234 (283)
T ss_pred CCC---CcCHHHHHHHHHhh-------CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHH
Confidence 001 23367788888876 799999999854 466788999999999999988754
No 325
>PRK06256 biotin synthase; Validated
Probab=96.46 E-value=0.12 Score=51.79 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+++.++.+++. ++..+.++++ -.+. +.++++.++|++.+.+|+-. +......... ..+.+...+.++.
T Consensus 125 ~~~~~e~i~~i~~~-~~i~~~~~~g-~l~~----e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~--~~t~~~~i~~i~~ 195 (336)
T PRK06256 125 VDQVVEAVKAIKEE-TDLEICACLG-LLTE----EQAERLKEAGVDRYNHNLET-SRSYFPNVVT--THTYEDRIDTCEM 195 (336)
T ss_pred HHHHHHHHHHHHhc-CCCcEEecCC-cCCH----HHHHHHHHhCCCEEecCCcc-CHHHHhhcCC--CCCHHHHHHHHHH
Confidence 45677777777765 4556677764 2333 34567888899999888643 2111111110 1244555556666
Q ss_pred HhhccCccE----EEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 213 INAKATVPV----WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 213 vr~~~~iPv----~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
+++. ++++ ++-+.-+..+..+.+..+.+.+++.+.+. .+...++ +|. .... +.-....
T Consensus 196 a~~~-Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~-~l~P~pG------T~l---------~~~~-~~~~~e~ 257 (336)
T PRK06256 196 VKAA-GIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPIN-FLNPIPG------TPL---------ENHP-ELTPLEC 257 (336)
T ss_pred HHHc-CCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeec-ccccCCC------CCC---------CCCC-CCCHHHH
Confidence 6554 4443 33332223356778888889999887543 2211111 111 0110 0001223
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCC-CCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCC
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGV-ETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFS 364 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI-~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~ 364 (422)
++.+..+|-.++ +..|..+||= ..-.|...+..+||+++++|--+-..|..+-++ + +.+++.||.
T Consensus 258 l~~ia~~Rl~~p------~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g~~~~~d----~-~~~~~~g~~ 323 (336)
T PRK06256 258 LKTIAIFRLINP------DKEIRIAGGREVNLRSLQPLGLGGANSVIVGNYLTTVGQPATAD----L-DMIEDLGFE 323 (336)
T ss_pred HHHHHHHHHHCC------CCeeEecCchhhhchhhHHHHhccCceeeECCcccCCCCChHHH----H-HHHHHCCCC
Confidence 444454444443 6777777775 445555555448999999999887776543333 2 255667775
No 326
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.46 E-value=0.028 Score=56.13 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCC--HHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYN--KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~--~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
++...+.++.+++.. +.|+.+-+..|.+ ..++.+++++++++|+|+|.++--.. .....|. .+ .+.+
T Consensus 118 p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~---~~~~~G~---a~----~~~i 186 (321)
T PRK10415 118 PDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR---ACLFNGE---AE----YDSI 186 (321)
T ss_pred HHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCcc---ccccCCC---cC----hHHH
Confidence 344444555666554 7788887754443 34688999999999999999874210 0010010 12 3566
Q ss_pred HHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 211 GWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 211 ~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
+.+++.+++||+. +.++.+.....+.+...|+|+|.+.
T Consensus 187 ~~ik~~~~iPVI~--nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 187 RAVKQKVSIPVIA--NGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred HHHHHhcCCcEEE--eCCCCCHHHHHHHHhccCCCEEEEC
Confidence 6777777999987 5667666655555556899998644
No 327
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.44 E-value=0.11 Score=54.54 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccc-cChhHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVG-QDCRLLEEVCGW 212 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~-~~~~~v~~iv~~ 212 (422)
+..++.++++|+.+|+.|||+-- ..+.+. ++.+.++|+|+|.+.++.-..-+.+.+- .++ .....+.++.++
T Consensus 251 ~~~~~~i~~i~~~~~~~~vi~g~--~~t~~~----~~~l~~~G~d~i~vg~g~Gs~~ttr~~~-~~g~~~~~a~~~~~~~ 323 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVPIVAGN--VVSAEG----VRDLLEAGANIIKVGVGPGAMCTTRMMT-GVGRPQFSAVLECAAE 323 (475)
T ss_pred HHHHHHHHHHHHHCCCCeEEEec--cCCHHH----HHHHHHhCCCEEEECCcCCccccCcccc-CCCCchHHHHHHHHHH
Confidence 44556688888888899999832 335544 4566678999999887511100112110 011 233445555555
Q ss_pred HhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcc
Q 014581 213 INAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMS 255 (422)
Q Consensus 213 vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~ 255 (422)
.++. ++||+.- ..+.....++|+ ..+||+++.+.+.+.+
T Consensus 324 ~~~~-~~~viad--Ggi~~~~di~ka-la~GA~~vm~g~~~ag 362 (475)
T TIGR01303 324 ARKL-GGHVWAD--GGVRHPRDVALA-LAAGASNVMVGSWFAG 362 (475)
T ss_pred HHHc-CCcEEEe--CCCCCHHHHHHH-HHcCCCEEeechhhcc
Confidence 5554 8899874 444455666654 5699999988876654
No 328
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.43 E-value=0.11 Score=51.70 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=77.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN 228 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~ 228 (422)
+.||+.+=|...... ++|..+.+.|.=.+ +| +. .+++...+.++.++.....-+.|-+...
T Consensus 45 ~iPii~AnMdtv~~~---~mA~~la~~g~~~~-iH---------k~------~~~e~~~~~v~~~~~~~~~~~~vsvG~~ 105 (343)
T TIGR01305 45 GVPIIAANMDTVGTF---EMAAALSQHSIFTA-IH---------KH------YSVDEWKAFATNSSPDCLQNVAVSSGSS 105 (343)
T ss_pred CCceEecCCCcccCH---HHHHHHHHCCCeEE-Ee---------eC------CCHHHHHHHHHhhcccccceEEEEeccC
Confidence 679998776332222 45666666542221 11 11 2344455555544433333334422221
Q ss_pred CCChHHHHHHHHHcC--CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCC
Q 014581 229 ITDITEPARVALRSG--SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDK 306 (422)
Q Consensus 229 ~~~~~~~a~~l~~aG--adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~ 306 (422)
++..+.++.+.++| +|.|++- + ..|+| ...++.|+.+++.++
T Consensus 106 -~~d~er~~~L~~a~~~~d~iviD-~-----------------------AhGhs-----~~~i~~ik~ir~~~p------ 149 (343)
T TIGR01305 106 -DNDLEKMTSILEAVPQLKFICLD-V-----------------------ANGYS-----EHFVEFVKLVREAFP------ 149 (343)
T ss_pred -HHHHHHHHHHHhcCCCCCEEEEE-C-----------------------CCCcH-----HHHHHHHHHHHhhCC------
Confidence 23356777888885 8887532 1 12333 334677888888763
Q ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+ +.+..|.|.+++++.+++.+|||+|-||
T Consensus 150 ~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 150 E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3 4566678999999999999999999766
No 329
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.43 E-value=0.018 Score=57.09 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCC--HHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYN--KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~--~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
++...+.++.+++.. +.||-+-+.-+.+ .++..+++++++++|+++|-||.-.+.. + | ....-++.+
T Consensus 107 p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---~-~------~~~a~w~~i 175 (309)
T PF01207_consen 107 PDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---R-Y------KGPADWEAI 175 (309)
T ss_dssp HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---C-C------TS---HHHH
T ss_pred hHHhhHHHHhhhccc-ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---c-C------CcccchHHH
Confidence 456666677777765 6899887765554 6778999999999999999999643332 1 1 112234556
Q ss_pred HHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 211 GWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 211 ~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
..+++.+++||+. +.++.+..+.-+.+...|+|||.+.
T Consensus 176 ~~i~~~~~ipvi~--NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 176 AEIKEALPIPVIA--NGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHCHHC-TSEEEE--ESS--SHHHHHHHCCCH-SSEEEES
T ss_pred HHHhhcccceeEE--cCccCCHHHHHHHHHhcCCcEEEEc
Confidence 6777777899987 5777666665555656699999644
No 330
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.42 E-value=0.08 Score=53.50 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhCC-CCeEEEEeCC------CCCHHHHHHHHHHHHHhCCCEEEEccCCC--CCCCccccccccccChhH
Q 014581 135 TMLKEFKQLKALYP-DKILIASIME------EYNKAAWEELIDRVEETGIDAIEVNFSCP--HGMPERKMGAAVGQDCRL 205 (422)
Q Consensus 135 ~~l~~i~~~k~~~~-~~pvi~si~~------~~~~~~~~~~a~~~~~aGaD~iElN~scP--~~~~~~~~G~~l~~~~~~ 205 (422)
..++.++.+++..+ +.+|.+-+.. +.+.++..+++++++++|+|+|++-.+.. ....... ......
T Consensus 189 ~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~-----~~~~~~ 263 (353)
T cd02930 189 FPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIAT-----SVPRGA 263 (353)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc-----cCCchh
Confidence 34455666776653 5677766641 35778889999999999999999854321 1100000 011122
Q ss_pred HHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHc-CCCEEEEe
Q 014581 206 LEEVCGWINAKATVPVWAKMTPNITDITEPARVALRS-GSEGVSAI 250 (422)
Q Consensus 206 v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~a-Gadgi~v~ 250 (422)
..+..+.+|+.+++||++ ...+.+.. .++.+.+. ++|.|.+.
T Consensus 264 ~~~~~~~ik~~v~iPVi~--~G~i~~~~-~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 264 FAWATAKLKRAVDIPVIA--SNRINTPE-VAERLLADGDADMVSMA 306 (353)
T ss_pred hHHHHHHHHHhCCCCEEE--cCCCCCHH-HHHHHHHCCCCChhHhh
Confidence 345667788888999987 34444544 45555554 58877443
No 331
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.41 E-value=1.1 Score=44.37 Aligned_cols=97 Identities=7% Similarity=-0.050 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... +.||++.++ ..+.++..++++.+++.|+|++-+-- |.. +..+.+.+.+..+
T Consensus 60 ~eEr~~v~~~~~~~~~grvpvi~Gv~-~~~t~~ai~~a~~A~~~Gad~vlv~~--P~y---------~~~~~~~l~~yf~ 127 (309)
T cd00952 60 WEEKQAFVATVVETVAGRVPVFVGAT-TLNTRDTIARTRALLDLGADGTMLGR--PMW---------LPLDVDTAVQFYR 127 (309)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEec-cCCHHHHHHHHHHHHHhCCCEEEECC--CcC---------CCCCHHHHHHHHH
Confidence 4555555555554333 479999996 56788889999999999999998652 432 1124467888888
Q ss_pred HHhhcc-CccEEEEECCCCCC---hHHHHHHHHH
Q 014581 212 WINAKA-TVPVWAKMTPNITD---ITEPARVALR 241 (422)
Q Consensus 212 ~vr~~~-~iPv~vKl~~~~~~---~~~~a~~l~~ 241 (422)
.|.+.+ ++||++--.|..+. ..++.+.+.+
T Consensus 128 ~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 128 DVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred HHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 888888 69999986664321 3556666654
No 332
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.40 E-value=0.036 Score=55.16 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCC--HHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYN--KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~--~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
++...+.++.+++.. +.||.+-+..+.+ ..++.+++++++++|+|+|.++-..+. ..+ ......+.+
T Consensus 116 ~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~----~~~------~~~~~~~~i 184 (319)
T TIGR00737 116 PDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRA----QGY------SGEANWDII 184 (319)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccc----ccC------CCchhHHHH
Confidence 344455566666654 6899887743322 235678899999999999999742211 111 011234667
Q ss_pred HHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 211 GWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 211 ~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
+.+++.+++||+. +.++.+.....+.+...|+|+|.+.
T Consensus 185 ~~i~~~~~ipvi~--nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 185 ARVKQAVRIPVIG--NGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred HHHHHcCCCcEEE--eCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 7788878899986 5667776666666667899998653
No 333
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=96.39 E-value=0.22 Score=46.69 Aligned_cols=146 Identities=13% Similarity=0.101 Sum_probs=85.1
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh-CCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a-GaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
++++.+.. +.+|.+++. +.+.++..+.++.+.+. +--.|+| |.+. .--+.++.+++. +
T Consensus 43 ~~~i~~~~-~~~v~~qv~-~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~--------------~gl~ai~~L~~~-g 101 (211)
T cd00956 43 LKEICEII-DGPVSAQVV-STDAEGMVAEARKLASLGGNVVVKI----PVTE--------------DGLKAIKKLSEE-G 101 (211)
T ss_pred HHHHHHhc-CCCEEEEEE-eCCHHHHHHHHHHHHHhCCCEEEEE----cCcH--------------hHHHHHHHHHHc-C
Confidence 34444433 568999996 67888888888888764 3323333 3321 011234444433 5
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEe-cCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
+++.+-..- + .+=+..+.++|++.|..+ |+... .|.. ....++++.+
T Consensus 102 i~v~~T~V~---s-~~Qa~~Aa~AGA~yvsP~vgR~~~---------------------~g~d-------g~~~i~~i~~ 149 (211)
T cd00956 102 IKTNVTAIF---S-AAQALLAAKAGATYVSPFVGRIDD---------------------LGGD-------GMELIREIRT 149 (211)
T ss_pred CceeeEEec---C-HHHHHHHHHcCCCEEEEecChHhh---------------------cCCC-------HHHHHHHHHH
Confidence 666553322 2 344667788999986543 32211 1111 1244555655
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.+...- .+. =|...|+++++++.+++.+|||.|-+.-.++.
T Consensus 150 ~~~~~~--~~t-kil~As~r~~~ei~~a~~~Gad~vTv~~~vl~ 190 (211)
T cd00956 150 IFDNYG--FDT-KILAASIRNPQHVIEAALAGADAITLPPDVLE 190 (211)
T ss_pred HHHHcC--CCc-eEEecccCCHHHHHHHHHcCCCEEEeCHHHHH
Confidence 553210 123 34556899999999999999999999865554
No 334
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.38 E-value=0.039 Score=55.34 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhhccCccEEEEECCCC-CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC
Q 014581 203 CRLLEEVCGWINAKATVPVWAKMTPNI-TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC 281 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~~iPv~vKl~~~~-~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG 281 (422)
.+...+.+..+++..++||++++...- .+..+.++.+.++|+|+|.+.-.-.. .+ . +..|
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp---~~---------------~-~~~g 146 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLP---TD---------------P-DISG 146 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---CC---------------C-CCcc
Confidence 455566666676666899999997642 23567888899999999976421110 00 0 1112
Q ss_pred CCcchhHHHHHHHHHHHhhccCCCCCceEEEe--cCCCCHHHHHHHH-HhCCCEEEEhhHH
Q 014581 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI--GGVETGGDAAEFI-LLGANTVQVCTGV 339 (422)
Q Consensus 282 ~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~--GGI~s~~da~~~l-~aGAd~V~vgtal 339 (422)
........+.++.+++.+ ++||++- +++.+..++.+.+ .+|||+|.+...+
T Consensus 147 ~~~~~~~~eil~~v~~~~-------~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 147 AEVEQRYLDILRAVKSAV-------SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred ccHHHHHHHHHHHHHhcc-------CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 221122346666666654 7888876 4555667777766 5899999876443
No 335
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.022 Score=52.95 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=65.7
Q ss_pred HHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 208 EVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 208 ~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
++...+++..=+||+.-.++ ++...+++++.+.|++.|.++-++ |.
T Consensus 5 ~~~~~l~~~~vI~Vlr~~~~--e~a~~~a~Ali~gGi~~IEITl~s--------------------------------p~ 50 (211)
T COG0800 5 KILSKLKAQPVVPVIRGDDV--EEALPLAKALIEGGIPAIEITLRT--------------------------------PA 50 (211)
T ss_pred HHHHHHHHCCeeEEEEeCCH--HHHHHHHHHHHHcCCCeEEEecCC--------------------------------CC
Confidence 34455555445677665443 457889999999999999887653 34
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEE
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQ 334 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~ 334 (422)
+++.|+.+++.++ =-+||.|=|-+++|+.++..+||+.+.
T Consensus 51 a~e~I~~l~~~~p-------~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 51 ALEAIRALAKEFP-------EALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred HHHHHHHHHHhCc-------ccEEccccccCHHHHHHHHHcCCCEEE
Confidence 5688888888774 239999999999999999999999775
No 336
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.34 E-value=0.099 Score=52.86 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=60.7
Q ss_pred HHHHHHHHhhC-----CCCeEEEEeCC------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhH
Q 014581 137 LKEFKQLKALY-----PDKILIASIME------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRL 205 (422)
Q Consensus 137 l~~i~~~k~~~-----~~~pvi~si~~------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~ 205 (422)
++.++.+++.. ++.+|.+-+.. +.+.++..++++.++++|+|+|++..+...... .... . ..
T Consensus 198 ~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~-~~~~-~--~~--- 270 (353)
T cd04735 198 LAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKS-RRGR-D--DN--- 270 (353)
T ss_pred HHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcccccc-ccCC-c--ch---
Confidence 34455566554 35677776642 346788899999999999999999764332211 1000 0 11
Q ss_pred HHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 206 LEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 206 v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
....+.+++.+ ++||++ ...+.+.. .++.+.+.|+|.|.+.
T Consensus 271 -~~~~~~ik~~~~~~iPVi~--~Ggi~t~e-~ae~~l~~gaD~V~~g 313 (353)
T cd04735 271 -QTIMELVKERIAGRLPLIA--VGSINTPD-DALEALETGADLVAIG 313 (353)
T ss_pred -HHHHHHHHHHhCCCCCEEE--ECCCCCHH-HHHHHHHcCCChHHHh
Confidence 22334444444 789886 45555544 4555555699987543
No 337
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.33 E-value=0.17 Score=48.63 Aligned_cols=165 Identities=17% Similarity=0.184 Sum_probs=81.3
Q ss_pred HHHhhCCCCeEEEEeCCCCCH-HHHHHHHHHHHHhCCCEEEEccCCCCCC-CccccccccccC---hhHHHHHHHHHhhc
Q 014581 142 QLKALYPDKILIASIMEEYNK-AAWEELIDRVEETGIDAIEVNFSCPHGM-PERKMGAAVGQD---CRLLEEVCGWINAK 216 (422)
Q Consensus 142 ~~k~~~~~~pvi~si~~~~~~-~~~~~~a~~~~~aGaD~iElN~scP~~~-~~~~~G~~l~~~---~~~v~~iv~~vr~~ 216 (422)
++.-..++.||++-+. +.+| -++.++.+.+.+.|+.+|. |+ |... .+..+...++.. .+.=-++++.-++.
T Consensus 74 eiLp~v~~tPViaGv~-atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~ 149 (268)
T PF09370_consen 74 EILPVVKDTPVIAGVC-ATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEK 149 (268)
T ss_dssp HHGGG-SSS-EEEEE--TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHT
T ss_pred hhhhhccCCCEEEEec-CcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3333345789999996 4444 3566677888888999985 65 5431 111111122211 11112233332222
Q ss_pred --cCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCC----CCcchhHHH
Q 014581 217 --ATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSC----KAVHPIALG 290 (422)
Q Consensus 217 --~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG----~~i~p~al~ 290 (422)
..+|.. .+ .+-|++..++|+|-|+++-.+. .||..| ..+ ..+.+
T Consensus 150 gl~T~~yv-------f~-~e~A~~M~~AGaDiiv~H~GlT---------------------~gG~~Ga~~~~sl-~~a~~ 199 (268)
T PF09370_consen 150 GLFTTAYV-------FN-EEQARAMAEAGADIIVAHMGLT---------------------TGGSIGAKTALSL-EEAAE 199 (268)
T ss_dssp T-EE--EE--------S-HHHHHHHHHHT-SEEEEE-SS-------------------------------S--H-HHHHH
T ss_pred CCeeeeee-------cC-HHHHHHHHHcCCCEEEecCCcc---------------------CCCCcCccccCCH-HHHHH
Confidence 133332 23 4567777899999998874321 112111 111 22345
Q ss_pred HHHHHHHHhhccCCCCC-ceEEEecCCCCHHHHHHHHH--hCCCEEEEhhHHHhh
Q 014581 291 KVMSIAKMMKSEFNDKD-YSLSGIGGVETGGDAAEFIL--LGANTVQVCTGVMMH 342 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~-ipIIa~GGI~s~~da~~~l~--aGAd~V~vgtall~~ 342 (422)
.+.++.++.....+ + +.++-.|-|.+|+|+..++. .|+++.--+|.+-+=
T Consensus 200 ~~~~i~~aa~~v~~--dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ERl 252 (268)
T PF09370_consen 200 RIQEIFDAARAVNP--DIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSMERL 252 (268)
T ss_dssp HHHHHHHHHHCC-T--T-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTTTHH
T ss_pred HHHHHHHHHHHhCC--CeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccchhhc
Confidence 56666665543322 4 44555555999999999997 368888888887654
No 338
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.32 E-value=0.19 Score=50.05 Aligned_cols=129 Identities=16% Similarity=0.053 Sum_probs=79.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN 228 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~ 228 (422)
..|+++|=|.. ..=.++|+.+.+.|.-.+-.- .+++...+.++.++.. .+++.+ +..
T Consensus 34 ~~P~~inAM~t---~in~~LA~~a~~~G~~~i~hK-----------------~~~E~~~sfvrk~k~~-~L~v~~--SvG 90 (321)
T TIGR01306 34 KLPVVPANMQT---IIDEKLAEQLAENGYFYIMHR-----------------FDEESRIPFIKDMQER-GLFASI--SVG 90 (321)
T ss_pred cCcEEeeccch---hhhHHHHHHHHHcCCEEEEec-----------------CCHHHHHHHHHhcccc-ccEEEE--EcC
Confidence 67999988732 223456666666553333211 2445555544444322 234443 333
Q ss_pred CC-ChHHHHHHHHHcC--CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCC
Q 014581 229 IT-DITEPARVALRSG--SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFND 305 (422)
Q Consensus 229 ~~-~~~~~a~~l~~aG--adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~ 305 (422)
.+ +-.+.+..+.++| +|.|++- + ..|+| ...++.|+++++.+
T Consensus 91 ~t~e~~~r~~~lv~a~~~~d~i~~D-~-----------------------ahg~s-----~~~~~~i~~i~~~~------ 135 (321)
T TIGR01306 91 VKACEYEFVTQLAEEALTPEYITID-I-----------------------AHGHS-----NSVINMIKHIKTHL------ 135 (321)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEe-C-----------------------ccCch-----HHHHHHHHHHHHhC------
Confidence 33 2345677788888 5776432 1 12332 33467788888876
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 306 KDYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 306 ~~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+.|++..|.|.+++++..++.+|||+|.++
T Consensus 136 -p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 136 -PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred -CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 568888999999999999999999999887
No 339
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.32 E-value=0.69 Score=45.26 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+++ +.||.+.+--+.+.+. ++++.++|++.+-++-|.- .++.+.+..+++++.
T Consensus 59 ~~~~~~~~~~~A~~~-~vPV~lHLDH~~~~e~----i~~Ai~~GftSVM~DgS~l----------~~eeNi~~T~~vve~ 123 (283)
T PRK07998 59 YDYIYEIVKRHADKM-DVPVSLHLDHGKTFED----VKQAVRAGFTSVMIDGAAL----------PFEENIAFTKEAVDF 123 (283)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEECcCCCCHHH----HHHHHHcCCCEEEEeCCCC----------CHHHHHHHHHHHHHH
Confidence 344444455555554 7899999964444433 2334467999998875421 123455666666665
Q ss_pred HhhccCccEEEEEC-------------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 213 INAKATVPVWAKMT-------------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 213 vr~~~~iPv~vKl~-------------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
.+. .+++|=.=+. ..++++.+..+.+.+.|+|.+-+.-.+. .|-|
T Consensus 124 Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~---------------------HG~Y 181 (283)
T PRK07998 124 AKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNV---------------------HGLE 181 (283)
T ss_pred HHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcccc---------------------ccCC
Confidence 544 3566522111 1145677777778889999986653221 2333
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCH-HHHHHHHHhCCCEEEEhhHHHhh
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETG-GDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~-~da~~~l~aGAd~V~vgtall~~ 342 (422)
.+|. +.++.++++++.+ ++|+..=||=..+ +++.+++.+|+.=|=++|.+...
T Consensus 182 ~~p~---l~~~~l~~I~~~~-------~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a 235 (283)
T PRK07998 182 DIPR---IDIPLLKRIAEVS-------PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKA 235 (283)
T ss_pred CCCC---cCHHHHHHHHhhC-------CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHH
Confidence 3332 2356677888775 7888888876666 77888999999999999998754
No 340
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.30 E-value=0.22 Score=48.82 Aligned_cols=184 Identities=15% Similarity=0.208 Sum_probs=103.4
Q ss_pred HHHHHHhCCCEEEEccC---CCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCCh---HHHHHHHHHc
Q 014581 169 IDRVEETGIDAIEVNFS---CPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDI---TEPARVALRS 242 (422)
Q Consensus 169 a~~~~~aGaD~iElN~s---cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~---~~~a~~l~~a 242 (422)
|+.++++|++++-+--+ .-.+.+ +.| + -..+.+.+.++.|.+.+++||++=+-..+.+. .+.++.+.++
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~p--D~g--~-lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~a 100 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLP--DLG--I-TTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDA 100 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCC--CCC--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 46677889999987521 111111 111 1 23445555666677778999999876666554 4558889999
Q ss_pred CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCC---CH
Q 014581 243 GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVE---TG 319 (422)
Q Consensus 243 Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~---s~ 319 (422)
|+.||.+-..... + ..|-+.|+.+.|.. +.+.+|+.+...+- ..++-|++=-... ..
T Consensus 101 G~agi~IEDq~~p------K------------~cgh~~g~~lv~~e-e~~~kI~Aa~~a~~-~~d~~IiARTDa~~~~g~ 160 (285)
T TIGR02317 101 GAAAVHIEDQVLP------K------------RCGHLPGKELVSRE-EMVDKIAAAVDAKR-DEDFVIIARTDARAVEGL 160 (285)
T ss_pred CCeEEEEecCCCc------c------------ccCCCCCccccCHH-HHHHHHHHHHHhcc-CCCEEEEEEcCcccccCH
Confidence 9999977654321 0 01223344444443 45556655543211 1245565543322 24
Q ss_pred HHHH----HHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHH----H---HcCCCCHHHhhcCCcccCCCh
Q 014581 320 GDAA----EFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFM----K---MHNFSSIEDFRGASIEYFTTH 380 (422)
Q Consensus 320 ~da~----~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m----~---~~G~~si~d~~G~~~~~~~~~ 380 (422)
++++ .|..+|||+|.+-. +.. ...++++.+++..-+ - ..+.-+++|+.-.....+.-.
T Consensus 161 deAI~Ra~ay~~AGAD~vfi~g--~~~-~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~ 229 (285)
T TIGR02317 161 DAAIERAKAYVEAGADMIFPEA--LTS-LEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYKMVIYP 229 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC--CCC-HHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEc
Confidence 4544 34568999999965 223 556777777654111 1 123457888776655555433
No 341
>PRK12376 putative translaldolase; Provisional
Probab=96.29 E-value=0.54 Score=44.77 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=85.3
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 139 EFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.++++.+..++.||.+++. +.+.++..+-++++.+.+ +-+-+-+ |-+... | ..--+.++.+++. +
T Consensus 48 ~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~-~nv~VKI--P~T~~~---G-------~~gl~Ai~~L~~~-G 112 (236)
T PRK12376 48 FAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLG-ENVYVKI--PITNTK---G-------ESTIPLIKKLSAD-G 112 (236)
T ss_pred HHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhC-CCeEEEE--CCcCcc---c-------hhHHHHHHHHHHC-C
Confidence 3444444455679999996 567788887788876654 3333333 322100 0 0111233334333 6
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEe-cCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
+++-+-+.-...+....+.+....|++.+..+ ||... -|..| ...+.++++
T Consensus 113 I~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~dd---------------------~g~D~-------~~~i~~i~~ 164 (236)
T PRK12376 113 VKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIAD---------------------TGVDP-------VPLMKEALA 164 (236)
T ss_pred CeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhhh---------------------cCCCc-------HHHHHHHHH
Confidence 77766543221111111222222258887654 43311 01111 245666666
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.+...+ +..|++ ..|++.+++.+++++|||.|-+.-.++.+
T Consensus 165 i~~~~~---~tkILa-ASiR~~~~v~~a~~~Gad~vTvp~~v~~~ 205 (236)
T PRK12376 165 ICHSKP---GVELLW-ASPREVYNIIQADQLGCDIITVTPDVLKK 205 (236)
T ss_pred HHHhCC---CcEEEE-EecCCHHHHHHHHHcCCCEEEcCHHHHHH
Confidence 654321 555555 47999999999999999999988666544
No 342
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.28 E-value=0.63 Score=42.84 Aligned_cols=210 Identities=17% Similarity=0.152 Sum_probs=113.5
Q ss_pred CCCCC--CCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHHH
Q 014581 64 SGPPG--TNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFK 141 (422)
Q Consensus 64 Ag~~~--~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i~ 141 (422)
+|.++ .+...++-+.+.|.+.++++.=+.+|. ...|.+.. .|...|.|- ..++..++-++
T Consensus 26 aG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~---ADGPtIq~----------~n~~aL~ng-----~tl~~i~emvk 87 (268)
T KOG4175|consen 26 AGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPL---ADGPTIQA----------ANRRALLNG-----TTLNSIIEMVK 87 (268)
T ss_pred cCCCcHHHHHHHHHHHhcCCcCeEEecCccCccc---cCCchhhh----------hHHHHHHcC-----CcHHHHHHHHH
Confidence 45543 244556667778999999998777662 12233321 222333331 23677777777
Q ss_pred HHHhhCCCCeEEEEeCCCCCHH---HHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC
Q 014581 142 QLKALYPDKILIASIMEEYNKA---AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT 218 (422)
Q Consensus 142 ~~k~~~~~~pvi~si~~~~~~~---~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~ 218 (422)
.++...-..|+| +++-|+|= .-.++.+.+.++|+.++-+- --| |+....+-.+.|+. .
T Consensus 88 ~ar~~gvt~PIi--LmgYYNPIl~yG~e~~iq~ak~aGanGfiiv-DlP---------------pEEa~~~Rne~~k~-g 148 (268)
T KOG4175|consen 88 EARPQGVTCPII--LMGYYNPILRYGVENYIQVAKNAGANGFIIV-DLP---------------PEEAETLRNEARKH-G 148 (268)
T ss_pred HhcccCccccee--eeecccHHHhhhHHHHHHHHHhcCCCceEec-cCC---------------hHHHHHHHHHHHhc-C
Confidence 776542245666 44334431 11234555667788876542 112 23344444445444 3
Q ss_pred ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 219 VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 219 iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
+-++.=..|..++ +-.+.+..+--.+|.+..+.+. .+ .... +...--..+.++++.
T Consensus 149 islvpLvaPsTtd--eRmell~~~adsFiYvVSrmG~-TG----------------~~~s-----vn~~l~~L~qrvrk~ 204 (268)
T KOG4175|consen 149 ISLVPLVAPSTTD--ERMELLVEAADSFIYVVSRMGV-TG----------------TRES-----VNEKLQSLLQRVRKA 204 (268)
T ss_pred ceEEEeeCCCChH--HHHHHHHHhhcceEEEEEeccc-cc----------------cHHH-----HHHHHHHHHHHHHHh
Confidence 3333333454333 3344444442334444443321 00 0000 111112445667776
Q ss_pred hhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 299 MKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
.. +.|+...-||.+++++.+.-.. ||+|.+||.++.
T Consensus 205 t~------dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 205 TG------DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred cC------CCceeEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 53 7999999999999999988777 999999998764
No 343
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.27 E-value=0.044 Score=53.20 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 206 LEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 206 v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
+..-++.+|+.. +++|.+=. .+. +-++.+.++|+|+|-+-|-+
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev----~t~-eea~~A~~~gaDyI~ld~~~------------------------------ 208 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEV----ESL-EEAEEAAEAGADIIMLDNMK------------------------------ 208 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEe----CCH-HHHHHHHHcCCCEEEECCCC------------------------------
Confidence 334455566544 34555432 233 45777889999988654321
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
| +.++++.+.+.+ .+||.++||| +.+.+.++..+|||.+.+ +++...
T Consensus 209 --~---e~lk~~v~~~~~-----~ipi~AsGGI-~~~ni~~~a~~Gvd~Isv-gait~s 255 (265)
T TIGR00078 209 --P---EEIKEAVQLLKG-----RVLLEASGGI-TLDNLEEYAETGVDVISS-GALTHS 255 (265)
T ss_pred --H---HHHHHHHHHhcC-----CCcEEEECCC-CHHHHHHHHHcCCCEEEe-CHHHcC
Confidence 1 334455554432 5899999999 599999999999999999 555543
No 344
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.25 E-value=0.1 Score=51.93 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=78.4
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN 228 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~ 228 (422)
+.|++.+=|..... .++|..+.+.|.=.+ +| +. .+++...+.++.++.....-++|-+...
T Consensus 46 giPii~AnMdTV~~---~~mA~~la~~g~~~~-iH---------k~------~~~e~~~~fv~~~~~~~~~~~~vavG~~ 106 (346)
T PRK05096 46 GVPIIAANMDTVGT---FEMAKALASFDILTA-VH---------KH------YSVEEWAAFVNNSSADVLKHVMVSTGTS 106 (346)
T ss_pred CCceEecCCCcccc---HHHHHHHHHCCCeEE-Ee---------cC------CCHHHHHHHHHhccccccceEEEEecCC
Confidence 68999877632222 246666766543221 11 11 2345555666655543222233322221
Q ss_pred CCChHHHHHHHHH--cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCC
Q 014581 229 ITDITEPARVALR--SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDK 306 (422)
Q Consensus 229 ~~~~~~~a~~l~~--aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~ 306 (422)
++..+.++.+.+ +|+|.|++- + ..|+| ...++.|+++++.++
T Consensus 107 -~~d~er~~~L~~~~~g~D~iviD-~-----------------------AhGhs-----~~~i~~ik~ik~~~P------ 150 (346)
T PRK05096 107 -DADFEKTKQILALSPALNFICID-V-----------------------ANGYS-----EHFVQFVAKAREAWP------ 150 (346)
T ss_pred -HHHHHHHHHHHhcCCCCCEEEEE-C-----------------------CCCcH-----HHHHHHHHHHHHhCC------
Confidence 123456667777 599988542 1 12333 334678888888774
Q ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+++| ..|.|.|++.+.+.+.+|||+|-||
T Consensus 151 ~~~v-IaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 151 DKTI-CAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 5664 4678999999999999999999755
No 345
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.25 E-value=0.061 Score=52.76 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=31.3
Q ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
+++|.++||| +.+.+.++..+|+|.+.+++....
T Consensus 243 ~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 243 RVKIEASGNI-TLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred CeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhC
Confidence 7999999999 599999999999999999997763
No 346
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.04 Score=55.01 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHH--HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAA--WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~--~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
++...+.++.+++..++.||-+=+.-|.+.++ +.++++.++++|++++-+|--.... + .....-++.+
T Consensus 120 p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~---~-------y~~~ad~~~I 189 (323)
T COG0042 120 PELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQ---G-------YLGPADWDYI 189 (323)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHh---c-------CCCccCHHHH
Confidence 34555566666665545899987766666655 7789999999999999999533221 1 1111234556
Q ss_pred HHHhhccC-ccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 211 GWINAKAT-VPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 211 ~~vr~~~~-iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
..+|+.++ +||+. +.++.+..+.-+.+...|+|+|.+.
T Consensus 190 ~~vk~~~~~ipvi~--NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 190 KELKEAVPSIPVIA--NGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred HHHHHhCCCCeEEe--CCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 66777666 88886 6777676666666777899999654
No 347
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.24 E-value=0.21 Score=55.67 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+.++.++++++.+.. .++||++.||| +.+++.+++.+||++|.+.++++..
T Consensus 150 lG~~~l~~~~~~~~~----~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 150 LGVDGIAEIAAVAQD----HGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred CCHHHHHHHHHhcCc----CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 345667777776621 13999999999 6999999999999999999999864
No 348
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=96.23 E-value=0.74 Score=43.47 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHH-hCCCEEEEccCCCCCCCccccccccccChhHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEE-TGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~-aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
.+..+++|.++ .+ +.||.+++. +.+.+++.+-|+++.+ .| +-+-+-+ |-+. +-+ +.+
T Consensus 40 ~~~~~~~i~~~---i~~~~~vs~ev~-~~~~~~mi~eA~~l~~~~~-~nv~VKI--P~T~-------------~Gl-~Ai 98 (222)
T PRK12656 40 FFERIREVREI---IGDEASIHVQVV-AQDYEGILKDAHEIRRQCG-DDVYIKV--PVTP-------------AGL-AAI 98 (222)
T ss_pred HHHHHHHHHHH---hCCCCcEEEEEE-ECCHHHHHHHHHHHHHHhC-CCEEEEe--CCCH-------------HHH-HHH
Confidence 34444444443 43 568999997 6778888888888764 33 3233222 3321 111 233
Q ss_pred HHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe-cCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 211 GWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 211 ~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
+.+++. ++++-+-+-- + .+=+..+.++|++.|..+ ||... -|.. | .
T Consensus 99 ~~L~~~-Gi~vn~T~if---s-~~Qa~~Aa~aGa~yvsPyvgRi~d---------------------~g~D-----~--~ 145 (222)
T PRK12656 99 KTLKAE-GYHITATAIY---T-VFQGLLAIEAGADYLAPYYNRMEN---------------------LNID-----S--N 145 (222)
T ss_pred HHHHHC-CCceEEeeeC---C-HHHHHHHHHCCCCEEecccchhhh---------------------cCCC-----H--H
Confidence 334333 6777665432 2 233456677999988653 33211 1111 1 2
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
..|+++++.+.... .+.. |..-.+++.+++.+++++||+.|-+.-.++.+
T Consensus 146 ~~i~~i~~~~~~~~--~~tk-ILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~ 195 (222)
T PRK12656 146 AVIGQLAEAIDREN--SDSK-ILAASFKNVAQVNKAFALGAQAVTAGPDVFEA 195 (222)
T ss_pred HHHHHHHHHHHhcC--CCCE-EEEEecCCHHHHHHHHHcCCCEEecCHHHHHH
Confidence 34555555553211 1444 44558999999999999999999998666654
No 349
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.21 E-value=0.085 Score=50.95 Aligned_cols=166 Identities=20% Similarity=0.259 Sum_probs=96.3
Q ss_pred CCCCCC--CHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHHH
Q 014581 64 SGPPGT--NYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFK 141 (422)
Q Consensus 64 Ag~~~~--~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i~ 141 (422)
+|.++. +.+.++.+.+.|+.+++++-=+.+|-- .-|.+.+.. .. .|.| ...++..++.++
T Consensus 18 aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~a---DGpvIq~a~--------~~--al~~-----G~~~~~~~~~v~ 79 (256)
T TIGR00262 18 AGDPTLETSLEIIKTLIEAGADALELGVPFSDPLA---DGPTIQAAD--------LR--ALRA-----GMTPEKCFELLK 79 (256)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCC---cCHHHHHHH--------HH--HHHc-----CCCHHHHHHHHH
Confidence 455432 456688888899999999987776621 123332110 00 1111 123678888888
Q ss_pred HHHhhCCCCeEEEEeCCCCCH---HHHHHHHHHHHHhCCCEEEEcc-----------------------CCCCCCCcc--
Q 014581 142 QLKALYPDKILIASIMEEYNK---AAWEELIDRVEETGIDAIEVNF-----------------------SCPHGMPER-- 193 (422)
Q Consensus 142 ~~k~~~~~~pvi~si~~~~~~---~~~~~~a~~~~~aGaD~iElN~-----------------------scP~~~~~~-- 193 (422)
++++..++.|++ -++ -+++ -...++++.+.++|+|++-++- -.|++..++
T Consensus 80 ~ir~~~~~~plv-~m~-Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~ 157 (256)
T TIGR00262 80 KVRQKHPNIPIG-LLT-YYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLK 157 (256)
T ss_pred HHHhcCCCCCEE-EEE-eccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHH
Confidence 888653477876 332 2333 0123455666677888877641 134442111
Q ss_pred ------c---cc----ccccc---ChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecC
Q 014581 194 ------K---MG----AAVGQ---DCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINT 252 (422)
Q Consensus 194 ------~---~G----~~l~~---~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~ 252 (422)
. |- +.-++ ....+.+.++.+|+.++.||+|- ..+. ..+-++.+.++|+|++++...
T Consensus 158 ~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vg--fGI~-~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 158 QIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVG--FGIS-KPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred HHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEe--CCCC-CHHHHHHHHHcCCCEEEECHH
Confidence 0 00 00112 23457888899999888998873 3333 356788899999999877643
No 350
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.21 E-value=0.17 Score=47.49 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC-------ChH
Q 014581 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT-------DIT 233 (422)
Q Consensus 161 ~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~-------~~~ 233 (422)
+.....++++.+.++|+.+++++ + + +.++.+++.+++|++.-...++. ...
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~--~----------------~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~ 82 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRAN--G----------------V----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTI 82 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcC--C----------------H----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCH
Confidence 45677889999999999998852 1 1 23445555568998742212221 123
Q ss_pred HHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEe
Q 014581 234 EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI 313 (422)
Q Consensus 234 ~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~ 313 (422)
+.++.+.++|+|.|++...... .| .+ ....+.++.+++.. +++++.
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~---------~p----------~~-------~~~~~~i~~~~~~g-------~~~iiv- 128 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRP---------RP----------DG-------ETLAELIKRIHEEY-------NCLLMA- 128 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC---------CC----------CC-------cCHHHHHHHHHHHh-------CCeEEE-
Confidence 4678899999997765432210 00 00 01124455555542 366665
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEh
Q 014581 314 GGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 314 GGI~s~~da~~~l~aGAd~V~vg 336 (422)
++.+.+++.++..+|+|.+.+.
T Consensus 129 -~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 129 -DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred -ECCCHHHHHHHHHcCCCEEEcc
Confidence 7899999999999999998764
No 351
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=96.20 E-value=0.13 Score=52.28 Aligned_cols=103 Identities=22% Similarity=0.254 Sum_probs=69.3
Q ss_pred HHHHHhhCCCCeEEEEeCC--CCCHHHHHHHHHHHHHhCCCEEEEc--cCCCCCCCccccccccccChhHHHHHHHHHhh
Q 014581 140 FKQLKALYPDKILIASIME--EYNKAAWEELIDRVEETGIDAIEVN--FSCPHGMPERKMGAAVGQDCRLLEEVCGWINA 215 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~--~~~~~~~~~~a~~~~~aGaD~iElN--~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~ 215 (422)
++++-.. .++|++.++.. |.+++.+.+++..+...|+|.|--+ ++.+... .++.+.+.+.+.++...+
T Consensus 117 ~R~~lgv-~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~-------p~~eRv~~v~~av~~a~~ 188 (364)
T cd08210 117 LRALLGI-PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPFA-------PFEERVKACQEAVAEANA 188 (364)
T ss_pred HHHHhCC-CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccCC-------CHHHHHHHHHHHHHHHHh
Confidence 3444333 38999998863 6789999999999988999999544 2221111 122334445555555554
Q ss_pred cc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 216 KA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 216 ~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.+ ++++++=++...+++.+-++.++++|++++.+.
T Consensus 189 eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~ 225 (364)
T cd08210 189 ETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIA 225 (364)
T ss_pred hcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 44 578888887665567788889999999988654
No 352
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.19 E-value=0.18 Score=48.88 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=80.7
Q ss_pred CCCCeEEEEeCCCC------CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccc-cChhHHHHHHHHHhhccCc
Q 014581 147 YPDKILIASIMEEY------NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVG-QDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 147 ~~~~pvi~si~~~~------~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~-~~~~~v~~iv~~vr~~~~i 219 (422)
+.+.|+|+.+..+. ..+...--++.+...|||++-+++.- |+..+ +..+.+.++.++-. ...+
T Consensus 72 ~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~---------Gs~~E~~~l~~l~~v~~ea~-~~G~ 141 (264)
T PRK08227 72 ATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFI---------GSEYEHQSIKNIIQLVDAGL-RYGM 141 (264)
T ss_pred cCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEec---------CCHHHHHHHHHHHHHHHHHH-HhCC
Confidence 34678888875321 11122222444556799998776521 11111 11122333333322 2489
Q ss_pred cEEEEECCC---CCC----hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHH
Q 014581 220 PVWAKMTPN---ITD----ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292 (422)
Q Consensus 220 Pv~vKl~~~---~~~----~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v 292 (422)
|+++ +.|- +.+ +...++.+.+.|||.|.+-= .| +..
T Consensus 142 Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------------------------~~--------~~f 184 (264)
T PRK08227 142 PVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------------------------VE--------EGF 184 (264)
T ss_pred cEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------------------------CH--------HHH
Confidence 9988 5442 222 34556778899999874210 00 223
Q ss_pred HHHHHHhhccCCCCCceEEEecCCC-CHHHHH----HHHHhCCCEEEEhhHHHhh
Q 014581 293 MSIAKMMKSEFNDKDYSLSGIGGVE-TGGDAA----EFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 293 ~~i~~~~~~~~~~~~ipIIa~GGI~-s~~da~----~~l~aGAd~V~vgtall~~ 342 (422)
+++.+.+ .+||+..||=. +.+|++ +++.+||.+|.+||-++.+
T Consensus 185 ~~vv~a~-------~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 185 ERITAGC-------PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred HHHHHcC-------CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 4455554 68999999976 344444 4556899999999988876
No 353
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.19 E-value=0.15 Score=56.84 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhCC-CCeEEEEeCC------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHH
Q 014581 136 MLKEFKQLKALYP-DKILIASIME------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEE 208 (422)
Q Consensus 136 ~l~~i~~~k~~~~-~~pvi~si~~------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~ 208 (422)
.++.++.+++..+ +.||.+-|.. +.+.++..++++.++++|+|.|++..+.-.......++. .....
T Consensus 604 ~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~------~~~~~ 677 (765)
T PRK08255 604 PLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGR------MYQTP 677 (765)
T ss_pred HHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCc------cccHH
Confidence 3444555665543 5788887752 346788899999999999999998754321110011110 11123
Q ss_pred HHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 209 VCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 209 iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
..+.+|+.+++||++ +.++.+.....+.+.+.++|.|.+.
T Consensus 678 ~~~~ik~~~~~pv~~--~G~i~~~~~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 678 FADRIRNEAGIATIA--VGAISEADHVNSIIAAGRADLCALA 717 (765)
T ss_pred HHHHHHHHcCCEEEE--eCCCCCHHHHHHHHHcCCcceeeEc
Confidence 456777778999887 4555555444444444558877543
No 354
>PRK08508 biotin synthase; Provisional
Probab=96.18 E-value=0.46 Score=46.43 Aligned_cols=193 Identities=16% Similarity=0.109 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.|.+++.++.+|+..|+..+.++.+ -.+. +.++++.++|+|.+-+|+-.-.. ..+... -..+.+...+.++.
T Consensus 74 ~e~~~ei~~~ik~~~p~l~i~~s~G-~~~~----e~l~~Lk~aGld~~~~~lEt~~~-~~~~i~--~~~~~~~~l~~i~~ 145 (279)
T PRK08508 74 LEYVAEAAKAVKKEVPGLHLIACNG-TASV----EQLKELKKAGIFSYNHNLETSKE-FFPKIC--TTHTWEERFQTCEN 145 (279)
T ss_pred HHHHHHHHHHHHhhCCCcEEEecCC-CCCH----HHHHHHHHcCCCEEcccccchHH-HhcCCC--CCCCHHHHHHHHHH
Confidence 6788888888887766666667764 2343 35677778999999988632110 000000 01333444455555
Q ss_pred HhhccCccE----EEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc-hh
Q 014581 213 INAKATVPV----WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH-PI 287 (422)
Q Consensus 213 vr~~~~iPv----~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~-p~ 287 (422)
.++. .+++ ++-+.-...+..+++..+.+.+.+.|-+. -+... ...|. . .+... ..
T Consensus 146 a~~~-Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~-~~~p~------~~t~~----------~--~~~~~~~~ 205 (279)
T PRK08508 146 AKEA-GLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPIN-FFIPN------PALPL----------K--APTLSADE 205 (279)
T ss_pred HHHc-CCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeC-CcCCC------CCCCC----------C--CCCCCHHH
Confidence 5554 3443 44443333356778888889998865332 22111 11111 0 01111 23
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCC-CC-HHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCC
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGV-ET-GGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFS 364 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI-~s-~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~ 364 (422)
.++.+.-.|-.++ +.-|-..||- .. .+.-..++.+||+.+++|--+-..|..+-+++ +.+++.|+.
T Consensus 206 ~lr~iAv~Rl~lp------~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~-----~~~~~~~~~ 273 (279)
T PRK08508 206 ALEIVRLAKEALP------NARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDI-----EKLKSLGFE 273 (279)
T ss_pred HHHHHHHHHHHCC------CceeeecCChhhhchhhHHHHHhcCCcceeecCcccCCCCChHHHH-----HHHHHcCCC
Confidence 3455544444443 5667777775 22 23334567799999999987766665543332 255666764
No 355
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.17 E-value=0.15 Score=51.69 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=60.6
Q ss_pred HHHHHHHHhhCCCCeEEEEeC---------CCCCHHH-HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHH
Q 014581 137 LKEFKQLKALYPDKILIASIM---------EEYNKAA-WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 206 (422)
Q Consensus 137 l~~i~~~k~~~~~~pvi~si~---------~~~~~~~-~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v 206 (422)
++.++.+++..++.+|++-+. .+.+.++ +.++++++++.|+|+|++. +|...... ...
T Consensus 213 ~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs--~~~~~~~~----------~~~ 280 (362)
T PRK10605 213 LEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMS--EPDWAGGE----------PYS 280 (362)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEec--cccccCCc----------ccc
Confidence 344556666554445776653 1356677 7999999999999999875 44211000 112
Q ss_pred HHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcC-CCEEEEe
Q 014581 207 EEVCGWINAKATVPVWAKMTPNITDITEPARVALRSG-SEGVSAI 250 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~v~ 250 (422)
....+.||+.+++||++= ..+ + .+.++.+.+.| +|.|.+.
T Consensus 281 ~~~~~~ik~~~~~pv~~~--G~~-~-~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 281 DAFREKVRARFHGVIIGA--GAY-T-AEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred HHHHHHHHHHCCCCEEEe--CCC-C-HHHHHHHHHcCCCCEEEEC
Confidence 345567787788998864 223 3 45677777776 7877543
No 356
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.16 E-value=0.058 Score=53.31 Aligned_cols=87 Identities=21% Similarity=0.257 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECCCC-CChHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPNI-TDITEPA 236 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~~-~~~~~~a 236 (422)
.+.+.+.+.++++.+.|+|+|-++-+. |.......+.-.++++.+++.+ ++||++-...+- .+..+++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gtt---------GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~la 92 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTT---------GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELA 92 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC---------ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHH
Confidence 467888999999999999999887431 3333445566667777777766 689999877653 3478999
Q ss_pred HHHHHcCCCEEEEecCCcc
Q 014581 237 RVALRSGSEGVSAINTIMS 255 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~~~~ 255 (422)
+.+++.|+|++.+......
T Consensus 93 k~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 93 KHAEKLGADGILVVPPYYN 111 (299)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 9999999999999876543
No 357
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=96.16 E-value=0.065 Score=54.49 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=71.8
Q ss_pred HHHHHhhCCCCeEEEEeCC---CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 140 FKQLKALYPDKILIASIME---EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~---~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
++++-.. .++|+++.+.. +.+++.+.+++..+.+.|+|+|-.+=+.-... -..++.+.+.+.+.++.+.+.
T Consensus 121 ~R~~~gv-~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~-----~~~~eER~~~v~~av~~a~~~ 194 (367)
T cd08205 121 LRRLLGV-HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP-----YAPFEERVRACMEAVRRANEE 194 (367)
T ss_pred HHHHhCC-CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc-----cCCHHHHHHHHHHHHHHHHHh
Confidence 4444333 48999998763 46889999999999899999996653221110 012234445566666666655
Q ss_pred c--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCc
Q 014581 217 A--TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 254 (422)
Q Consensus 217 ~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~ 254 (422)
+ .+++++-++....++.+.++.++++|+|++.+..-..
T Consensus 195 TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 195 TGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred hCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 4 3455666665555677888999999999987775443
No 358
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.15 E-value=0.079 Score=51.80 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCC---------CCccccccccc-cC
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHG---------MPERKMGAAVG-QD 202 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~---------~~~~~~G~~l~-~~ 202 (422)
.+...+.++.+++.. +.||++-+....+.+++.++++.++++|+|+|.+.-..+.. ...+.+|..-+ ..
T Consensus 147 ~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~ 225 (289)
T cd02810 147 PEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPI 225 (289)
T ss_pred HHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHH
Confidence 345555666777655 78999998765677789999999999999999985321110 00011111000 01
Q ss_pred hhHHHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 203 CRLLEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.....+.++.+++.+ ++||+. ...+.+... +..+.++|+|+|.+.
T Consensus 226 ~~~~~~~v~~i~~~~~~~ipiia--~GGI~~~~d-a~~~l~~GAd~V~vg 272 (289)
T cd02810 226 RPLALRWVARLAARLQLDIPIIG--VGGIDSGED-VLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEE--ECCCCCHHH-HHHHHHcCccHheEc
Confidence 112345677777777 788876 455655444 445556999988655
No 359
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.36 Score=44.61 Aligned_cols=128 Identities=18% Similarity=0.098 Sum_probs=82.2
Q ss_pred CeEEEEeCC-----CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEE--
Q 014581 150 KILIASIME-----EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW-- 222 (422)
Q Consensus 150 ~pvi~si~~-----~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~-- 222 (422)
.-+|+|... -++++....+|+.+++.||-+|-+|- ++ -++++++.+++||+
T Consensus 15 gglIVSCQal~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~g---------------------v~-dIkai~~~v~vPIIGI 72 (229)
T COG3010 15 GGLIVSCQALPGEPLDSPEIVAAMALAAEQGGAVGIRIEG---------------------VE-DIKAIRAVVDVPIIGI 72 (229)
T ss_pred CCeEEEeecCCCCCCcchhHHHHHHHHHHhCCcceEeecc---------------------hh-hHHHHHhhCCCCeEEE
Confidence 358888752 13567777889999999999998871 22 24567888899986
Q ss_pred EEECC-----CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 223 AKMTP-----NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 223 vKl~~-----~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
+|=.- .++-..+-++.|.++|++-|.+-.|... +|. | .+ .++.+
T Consensus 73 iKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~-----------RP~-------~----------~~---~~~i~ 121 (229)
T COG3010 73 IKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRP-----------RPD-------G----------DL---EELIA 121 (229)
T ss_pred EecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCC-----------CCc-------c----------hH---HHHHH
Confidence 45211 1122355677888999987755555432 221 1 11 12222
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
..+ .--..+.-.+.|.+|.+.+..+|+|.|.--
T Consensus 122 ~~k------~~~~l~MAD~St~ee~l~a~~~G~D~IGTT 154 (229)
T COG3010 122 RIK------YPGQLAMADCSTFEEGLNAHKLGFDIIGTT 154 (229)
T ss_pred Hhh------cCCcEEEeccCCHHHHHHHHHcCCcEEecc
Confidence 211 223566778999999999999999988643
No 360
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.10 E-value=0.081 Score=51.00 Aligned_cols=168 Identities=20% Similarity=0.262 Sum_probs=100.3
Q ss_pred CceecCCCCC-CCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHH
Q 014581 59 PFVIGSGPPG-TNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETML 137 (422)
Q Consensus 59 Pi~~AAg~~~-~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l 137 (422)
|++.+.=|+- .+.+.++.+.+.|+.++++|-=+.+|- -.-|.+... +.-.|.+ ....+..+
T Consensus 21 ~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPv---ADGP~Iq~A----------~~rAL~~-----g~t~~~~l 82 (265)
T COG0159 21 PYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPV---ADGPTIQAA----------HLRALAA-----GVTLEDTL 82 (265)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcC---ccCHHHHHH----------HHHHHHC-----CCCHHHHH
Confidence 4554432221 356778888899999999998777662 122433211 1111221 12378888
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCCH---HHHHHHHHHHHHhCCCEEEEc-----------------------cCCCCCCC
Q 014581 138 KEFKQLKALYPDKILIASIMEEYNK---AAWEELIDRVEETGIDAIEVN-----------------------FSCPHGMP 191 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~~~~~---~~~~~~a~~~~~aGaD~iElN-----------------------~scP~~~~ 191 (422)
+.++++++..++.|++.=. -+++ -...++.+++.++|+|++-+= +-.|++..
T Consensus 83 el~~~~r~~~~~~Pivlm~--Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 83 ELVEEIRAKGVKVPIVLMT--YYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred HHHHHHHhcCCCCCEEEEE--eccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 8899998766677877422 1222 122345666777788887661 12455432
Q ss_pred cc---------c--c--------ccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEec
Q 014581 192 ER---------K--M--------GAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAIN 251 (422)
Q Consensus 192 ~~---------~--~--------G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n 251 (422)
+| + | |.... ....+.+.++.+|+.+++|+.+-.. +.+ .+.++++.++ +||+++..
T Consensus 161 ~rl~~i~~~a~GFiY~vs~~GvTG~~~~-~~~~~~~~v~~vr~~~~~Pv~vGFG--Is~-~e~~~~v~~~-ADGVIVGS 234 (265)
T COG0159 161 ERLKKIAEAASGFIYYVSRMGVTGARNP-VSADVKELVKRVRKYTDVPVLVGFG--ISS-PEQAAQVAEA-ADGVIVGS 234 (265)
T ss_pred HHHHHHHHhCCCcEEEEecccccCCCcc-cchhHHHHHHHHHHhcCCCeEEecC--cCC-HHHHHHHHHh-CCeEEEcH
Confidence 21 1 0 21111 2234899999999999999998543 333 5567777788 99998764
No 361
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.09 E-value=0.22 Score=45.76 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=82.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc-cCccEEE--EECCC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK-ATVPVWA--KMTPN 228 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~-~~iPv~v--Kl~~~ 228 (422)
+++.+- -.+.++..++++.+.+. ++.+|+++.. . ..+| .+.++.+++. .++|+++ |+...
T Consensus 3 ~~~a~d-~~~~~~~~~~~~~l~~~-i~~ieig~~~--~---~~~g----------~~~i~~i~~~~~~~~i~~~~~v~~~ 65 (202)
T cd04726 3 LQVALD-LLDLEEALELAKKVPDG-VDIIEAGTPL--I---KSEG----------MEAVRALREAFPDKIIVADLKTADA 65 (202)
T ss_pred eEEEEc-CCCHHHHHHHHHHhhhc-CCEEEcCCHH--H---HHhC----------HHHHHHHHHHCCCCEEEEEEEeccc
Confidence 455553 35788888999999887 9999996421 0 1111 2455666654 4788887 65421
Q ss_pred CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCc
Q 014581 229 ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDY 308 (422)
Q Consensus 229 ~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~i 308 (422)
....++.+.++|+|+++++..... ....+.++.+++ . ++
T Consensus 66 ---~~~~~~~~~~aGad~i~~h~~~~~------------------------------~~~~~~i~~~~~-~-------g~ 104 (202)
T cd04726 66 ---GALEAEMAFKAGADIVTVLGAAPL------------------------------STIKKAVKAAKK-Y-------GK 104 (202)
T ss_pred ---cHHHHHHHHhcCCCEEEEEeeCCH------------------------------HHHHHHHHHHHH-c-------CC
Confidence 134578899999999998853210 001123333333 1 57
Q ss_pred eEEEe-cCCCCHHHHHHHHHhCCCEEEEh
Q 014581 309 SLSGI-GGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 309 pIIa~-GGI~s~~da~~~l~aGAd~V~vg 336 (422)
+++.. =+..|++++.+++..|+|.|.++
T Consensus 105 ~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 105 EVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred eEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 66663 78999999999888899999885
No 362
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.09 E-value=0.049 Score=53.05 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.4
Q ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEEEhhH
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGAd~V~vgta 338 (422)
++|++++||| +.+.+.++..+|+|+|.+++.
T Consensus 230 ~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai 260 (272)
T cd01573 230 PVLLAAAGGI-NIENAAAYAAAGADILVTSAP 260 (272)
T ss_pred CceEEEECCC-CHHHHHHHHHcCCcEEEEChh
Confidence 6999999999 799999999999999955543
No 363
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.05 E-value=0.21 Score=48.62 Aligned_cols=85 Identities=27% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECCCCC-ChHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPNIT-DITEPA 236 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~~~-~~~~~a 236 (422)
.+.+.+.+.++.+.+.|+++|-++-+. |....-+.+.-.++++.+++.. ++||++-++..-+ +..+.+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~Gst---------GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a 85 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTT---------GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELA 85 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC---------cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHH
Confidence 467788899999988999999887431 2223344455666676666654 6899998876433 478899
Q ss_pred HHHHHcCCCEEEEecCC
Q 014581 237 RVALRSGSEGVSAINTI 253 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~~ 253 (422)
+.++++|+|++.+....
T Consensus 86 ~~a~~~Gad~v~v~pP~ 102 (281)
T cd00408 86 RHAEEAGADGVLVVPPY 102 (281)
T ss_pred HHHHHcCCCEEEECCCc
Confidence 99999999999987654
No 364
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.01 E-value=0.16 Score=53.51 Aligned_cols=110 Identities=19% Similarity=0.256 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhCCCCeEEE-EeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 135 TMLKEFKQLKALYPDKILIA-SIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 135 ~~l~~i~~~k~~~~~~pvi~-si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
..++.++++|+.+|+.+|++ ++. +.+. ++.+.++|||+|-+.++.-..=+.+.+-+.--.+...+.++.++.
T Consensus 254 ~~~~~i~~ik~~~p~~~v~agnv~---t~~~----a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~ 326 (479)
T PRK07807 254 KMLEALRAVRALDPGVPIVAGNVV---TAEG----TRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAA 326 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEeeccC---CHHH----HHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHH
Confidence 34456788888899999998 885 3443 455667899999988863111011211110013555666666655
Q ss_pred hhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcc
Q 014581 214 NAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMS 255 (422)
Q Consensus 214 r~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~ 255 (422)
++ .++||+.- ..+.....++ ++..+||+++.+..-+.+
T Consensus 327 ~~-~~~~via~--ggi~~~~~~~-~al~~ga~~v~~g~~~ag 364 (479)
T PRK07807 327 RE-LGAHVWAD--GGVRHPRDVA-LALAAGASNVMIGSWFAG 364 (479)
T ss_pred Hh-cCCcEEec--CCCCCHHHHH-HHHHcCCCeeeccHhhcc
Confidence 44 37899874 3344445544 455699999987765543
No 365
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=95.98 E-value=0.91 Score=43.25 Aligned_cols=155 Identities=11% Similarity=0.091 Sum_probs=85.9
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCc
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~i 219 (422)
+++++...++.||.+++. +.+.+++.+-++++.+.+ +-+-+-+ |-+.. . | +..-+.++.+++. ++
T Consensus 49 ~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~-~nv~VKI--P~T~~-~--G-------~~~l~ai~~L~~~-GI 113 (236)
T TIGR02134 49 AHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWG-NNVNVKI--PVTNT-K--G-------ESTGPLIQKLSAD-GI 113 (236)
T ss_pred HHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcC-CCeEEEE--CCcCc-c--c-------chHHHHHHHHHHC-CC
Confidence 333333334779999996 567788888888886654 3344433 33210 0 1 0112233344333 66
Q ss_pred cEEEEECCCCCChHHHHHHHHHcC-CCEEEEe-cCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHH
Q 014581 220 PVWAKMTPNITDITEPARVALRSG-SEGVSAI-NTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAK 297 (422)
Q Consensus 220 Pv~vKl~~~~~~~~~~a~~l~~aG-adgi~v~-n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~ 297 (422)
++-+-+.-...+ ...+-.+.++| ++.+..+ ||... -|..| ...+.++++
T Consensus 114 ~vn~T~vfs~~Q-a~~aa~A~~aG~a~yispfvgR~dd---------------------~g~D~-------~~~i~~i~~ 164 (236)
T TIGR02134 114 TLNVTALTTIEQ-VEKVCQSFTDGVPGIVSVFAGRIAD---------------------TGVDP-------EPHMREALE 164 (236)
T ss_pred cEEeehcCCHHH-HHHHHHHHhCCCCeEEEEecchhhh---------------------cCCCc-------HHHHHHHHH
Confidence 766544322111 11222355689 5887654 44321 01111 234556666
Q ss_pred HhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 298 ~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
.+.... +..|++. .+++.+++.++..+|||.|-+.-.++.+
T Consensus 165 i~~~~~---~tkILaA-S~R~~~~v~~a~~~Gad~vTvp~~v~~~ 205 (236)
T TIGR02134 165 IVAQKP---GVELLWA-SPRELFNIIQADRIGCDIITCAHDILAK 205 (236)
T ss_pred HHHhCC---CcEEEEE-ccCCHHHHHHHHHcCCCEEECCHHHHHH
Confidence 554321 5666654 7999999999999999999988655544
No 366
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.97 E-value=0.088 Score=50.43 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceE
Q 014581 231 DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSL 310 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipI 310 (422)
++.++|+...++||++|.+-.- . ..++| +++.++.+++.+ ++||
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe----------~----------~~F~G---------s~~~l~~v~~~v-------~~Pv 105 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTD----------Q----------SYFGG---------SLEDLKSVSSEL-------KIPV 105 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcC----------C----------CcCCC---------CHHHHHHHHHhc-------CCCE
Confidence 5788999999999999965421 0 01222 256777888876 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 311 SGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 311 Ia~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
+.-+.|.++.++.++..+|||+|.+--+++.
T Consensus 106 L~KDFIid~~QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 106 LRKDFILDEIQIREARAFGASAILLIVRILT 136 (247)
T ss_pred EeccccCCHHHHHHHHHcCCCEEEeEHhhCC
Confidence 9999999999999999999999988887774
No 367
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.93 E-value=0.088 Score=51.86 Aligned_cols=86 Identities=24% Similarity=0.335 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECCCCCChHHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPNITDITEPAR 237 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~ 237 (422)
.+.+.+.+.++.+.+.|+|+|-++-+. |....-+.+.-.++++.+.+.+ ++||++=+..+..+..+.++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~Gst---------GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~ 93 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGT---------GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIAR 93 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCC---------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHH
Confidence 467788999999999999999887431 2222334455556666555543 68999887765446788999
Q ss_pred HHHHcCCCEEEEecCCc
Q 014581 238 VALRSGSEGVSAINTIM 254 (422)
Q Consensus 238 ~l~~aGadgi~v~n~~~ 254 (422)
.+.++|+|++.++....
T Consensus 94 ~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 94 LAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHhCCCEEEECCCCC
Confidence 99999999998887543
No 368
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.92 E-value=0.61 Score=45.94 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=106.1
Q ss_pred HHHHHHhCCCEEEEccCCC----CCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC---hHHHHHHHHH
Q 014581 169 IDRVEETGIDAIEVNFSCP----HGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD---ITEPARVALR 241 (422)
Q Consensus 169 a~~~~~aGaD~iElN~scP----~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~ 241 (422)
|+.++++|++++-+--+.- .+.+ +.| + -..+.+.+.++.|.+.+++||++=+-..+.+ +.+.++.+.+
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~p--D~g--~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~ 103 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLP--DLG--F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFER 103 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCC--CcC--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHH
Confidence 5677788999997631100 1111 111 0 1234455566667777899999987665554 4455788999
Q ss_pred cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCC---CC
Q 014581 242 SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGV---ET 318 (422)
Q Consensus 242 aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI---~s 318 (422)
+|+.||.+-..... + ..|-+.|+.+.|.. +.+.+|+.+...+- ..++-|++=-.. ..
T Consensus 104 aGaagi~IEDq~~p------K------------~cg~~~~k~lv~~e-e~~~kI~Aa~~A~~-~~d~~I~ARTDa~~~~g 163 (294)
T TIGR02319 104 VGIVGYHLEDQVNP------K------------RCGHLEGKRLISTE-EMTGKIEAAVEARE-DEDFTIIARTDARESFG 163 (294)
T ss_pred cCCeEEEEECCCCc------c------------ccCCCCCccccCHH-HHHHHHHHHHHhcc-CCCeEEEEEecccccCC
Confidence 99999977654321 0 01223344444443 45566655543211 124555553222 22
Q ss_pred HHHHH----HHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHH-----HHH--HcCCCCHHHhhcCCcccCCChhHHHHH
Q 014581 319 GGDAA----EFILLGANTVQVCTGVMMHGYGLVKRLCEELKD-----FMK--MHNFSSIEDFRGASIEYFTTHTELVRM 386 (422)
Q Consensus 319 ~~da~----~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~-----~m~--~~G~~si~d~~G~~~~~~~~~~~~~~~ 386 (422)
.++++ .|..+|||+|.+-. +.. +..++++.+++.. .+. ....-+++|+.-.....+.-+..+.+.
T Consensus 164 ~deaI~Ra~aY~eAGAD~ifi~~--~~~-~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 164 LDEAIRRSREYVAAGADCIFLEA--MLD-VEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHHHHHHHHhCCCEEEecC--CCC-HHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 34443 44568999999965 233 6777888777542 121 123447888877666655544344333
No 369
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.91 E-value=0.087 Score=51.71 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECCCCCChHHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPNITDITEPAR 237 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~ 237 (422)
.+.+.+.+.++++.+.|+|+|-++-+. |....-..+.-.++++.+.+.+ ++||++=+..+..+..++++
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~Gst---------GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~ 88 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGT---------GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQ 88 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCC---------cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHH
Confidence 356788889999989999999887431 2222233344445555555443 68999987655556788999
Q ss_pred HHHHcCCCEEEEecCCc
Q 014581 238 VALRSGSEGVSAINTIM 254 (422)
Q Consensus 238 ~l~~aGadgi~v~n~~~ 254 (422)
.++++|+|++.+.....
T Consensus 89 ~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 89 AAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHhCCCEEEECCCCC
Confidence 99999999999886543
No 370
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.91 E-value=0.35 Score=45.08 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=54.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD 231 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~ 231 (422)
+.+||. ..+...+.+.++.+.+.|+|.|++.+.-.. +-++.....+.++++++.++.|+-+-+-. .+
T Consensus 6 ~~~s~~-~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~v~l~v--~d 72 (220)
T PRK05581 6 IAPSIL-SADFARLGEEVKAVEAAGADWIHVDVMDGH----------FVPNLTIGPPVVEAIRKVTKLPLDVHLMV--EN 72 (220)
T ss_pred EEcchh-cCCHHHHHHHHHHHHHcCCCEEEEeCccCC----------cCCCcCcCHHHHHHHHhcCCCcEEEEeee--CC
Confidence 667775 567778888999999999999999642110 00111112345555655444343222221 24
Q ss_pred hHHHHHHHHHcCCCEEEEecC
Q 014581 232 ITEPARVALRSGSEGVSAINT 252 (422)
Q Consensus 232 ~~~~a~~l~~aGadgi~v~n~ 252 (422)
..+..+.+.++|+|+|+++..
T Consensus 73 ~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 73 PDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeec
Confidence 566677788999999988863
No 371
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.90 E-value=0.12 Score=51.06 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE-ccCC-C--CCCC-----cccccccccc-C
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEV-NFSC-P--HGMP-----ERKMGAAVGQ-D 202 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iEl-N~sc-P--~~~~-----~~~~G~~l~~-~ 202 (422)
.+...+.++.+++.. +.||++-+. .+.++..++++.++++|+|+|.+ |... . +... ...+|..-+. .
T Consensus 142 ~~~~~eiv~~vr~~~-~~pv~vKl~--~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 218 (301)
T PRK07259 142 PELAYEVVKAVKEVV-KVPVIVKLT--PNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAI 218 (301)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEcC--CCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCc
Confidence 445555666777655 789999885 34567889999999999999876 4221 1 0000 0011111000 0
Q ss_pred hhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 203 CRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.....+.+..+++.+++||+. ...+.+... +..+..+|+|+|.+.
T Consensus 219 ~p~~l~~v~~i~~~~~ipvi~--~GGI~~~~d-a~~~l~aGAd~V~ig 263 (301)
T PRK07259 219 KPIALRMVYQVYQAVDIPIIG--MGGISSAED-AIEFIMAGASAVQVG 263 (301)
T ss_pred ccccHHHHHHHHHhCCCCEEE--ECCCCCHHH-HHHHHHcCCCceeEc
Confidence 112345666677777899886 455655544 445556999988654
No 372
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.88 E-value=0.21 Score=46.19 Aligned_cols=126 Identities=23% Similarity=0.190 Sum_probs=76.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEc--cCCCCCCCccccccccccChhHHHHHHHHHhhc-cCccEE--EEEC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVN--FSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK-ATVPVW--AKMT 226 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN--~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~-~~iPv~--vKl~ 226 (422)
+++.+- ..+.++..++++.+ +.|++.||+. +..+.. -++++.+|+. .+.+++ +|+.
T Consensus 2 l~~alD-~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-----------------~~~i~~l~~~~~~~~i~~d~k~~ 62 (206)
T TIGR03128 2 LQLALD-LLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-----------------IEAVKEMKEAFPDRKVLADLKTM 62 (206)
T ss_pred eEEEec-CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-----------------HHHHHHHHHHCCCCEEEEEEeec
Confidence 445553 46788889999999 6789999996 322221 1345555554 234444 3443
Q ss_pred CCCCChHHH-HHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCC
Q 014581 227 PNITDITEP-ARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFND 305 (422)
Q Consensus 227 ~~~~~~~~~-a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~ 305 (422)
++... ++.+.++|+|.|+++..... ....+.+..+++ .
T Consensus 63 ----d~~~~~~~~~~~~Gad~i~vh~~~~~------------------------------~~~~~~i~~~~~-~------ 101 (206)
T TIGR03128 63 ----DAGEYEAEQAFAAGADIVTVLGVADD------------------------------ATIKGAVKAAKK-H------ 101 (206)
T ss_pred ----cchHHHHHHHHHcCCCEEEEeccCCH------------------------------HHHHHHHHHHHH-c------
Confidence 23333 78899999999987743210 001133333333 2
Q ss_pred CCceEEEe-cCCCC-HHHHHHHHHhCCCEEEEhhH
Q 014581 306 KDYSLSGI-GGVET-GGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 306 ~~ipIIa~-GGI~s-~~da~~~l~aGAd~V~vgta 338 (422)
+++++.. =+..+ .+++..+...|+|.|.+.++
T Consensus 102 -g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 102 -GKEVQVDLINVKDKVKRAKELKELGADYIGVHTG 135 (206)
T ss_pred -CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCC
Confidence 6777654 24444 47888888889999998654
No 373
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.88 E-value=0.18 Score=51.19 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhC-CCCeEEEEeCC----------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChh
Q 014581 136 MLKEFKQLKALY-PDKILIASIME----------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCR 204 (422)
Q Consensus 136 ~l~~i~~~k~~~-~~~pvi~si~~----------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~ 204 (422)
.++.++.+++.. ++.||.+-+.. +.+.++..++++.++++|+|+|++.. .........| .+
T Consensus 197 ~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~----~~-- 268 (361)
T cd04747 197 AAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEG----SE-- 268 (361)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCc----cc--
Confidence 344566666655 46789987752 24667888899999999999977643 2110000001 11
Q ss_pred HHHHHHHHHhhccCccEEEEECCC----------------CCChHHHHHHHHHc-CCCEEEE
Q 014581 205 LLEEVCGWINAKATVPVWAKMTPN----------------ITDITEPARVALRS-GSEGVSA 249 (422)
Q Consensus 205 ~v~~iv~~vr~~~~iPv~vKl~~~----------------~~~~~~~a~~l~~a-Gadgi~v 249 (422)
..+.+++|+.+++||++=-+-+ ..+ .+.++.+.+. ++|.|.+
T Consensus 269 --~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~-~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 269 --LNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPAS-LDRLLERLERGEFDLVAV 327 (361)
T ss_pred --hhHHHHHHHHcCCCEEEECCcccccccccccccccccccCC-HHHHHHHHHCCCCCeehh
Confidence 2345667777899998732210 123 3456666665 4887743
No 374
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.87 E-value=0.24 Score=48.17 Aligned_cols=184 Identities=12% Similarity=0.217 Sum_probs=107.7
Q ss_pred HHHHHHhCCCEEEEccC-CCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC---hHHHHHHHHHcCC
Q 014581 169 IDRVEETGIDAIEVNFS-CPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD---ITEPARVALRSGS 244 (422)
Q Consensus 169 a~~~~~aGaD~iElN~s-cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~aGa 244 (422)
|+.++++|+.++-+.-+ +-.+....++|. -..+.+-+.++.|.+.+++||+|-+-..+.+ +.+.++.+.++|+
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~---~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ 107 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGI---TTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGA 107 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCcccc---ccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCc
Confidence 56778889999987521 000111122221 1245555666777778899999988766655 4566778999999
Q ss_pred CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEE------ecCCCC
Q 014581 245 EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSG------IGGVET 318 (422)
Q Consensus 245 dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa------~GGI~s 318 (422)
.|+.+-....+. .-|-+.|+.+.+.. +.+.+|+.+...+. ..++-|++ .||+.+
T Consensus 108 agi~iEDq~~pk------------------~cgh~~gk~l~~~~-e~v~rIkAa~~a~~-~~~fvi~ARTda~~~~~ld~ 167 (289)
T COG2513 108 AGIHIEDQVGPK------------------RCGHLPGKELVSID-EMVDRIKAAVEARR-DPDFVIIARTDALLVEGLDD 167 (289)
T ss_pred ceeeeeecccch------------------hcCCCCCCCcCCHH-HHHHHHHHHHHhcc-CCCeEEEeehHHHHhccHHH
Confidence 999776544321 12334666666655 45666666543321 12455554 455221
Q ss_pred H-HHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHH-----HHH--HHcCCCCHHHhhcCCcccCC
Q 014581 319 G-GDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELK-----DFM--KMHNFSSIEDFRGASIEYFT 378 (422)
Q Consensus 319 ~-~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~-----~~m--~~~G~~si~d~~G~~~~~~~ 378 (422)
. +-+..|..+|||++-. ..+.. +..++++.+.+. +.+ .+...-+++++....++.+.
T Consensus 168 AI~Ra~AY~eAGAD~if~--~al~~-~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~ 232 (289)
T COG2513 168 AIERAQAYVEAGADAIFP--EALTD-LEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKRVS 232 (289)
T ss_pred HHHHHHHHHHcCCcEEcc--ccCCC-HHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceEEE
Confidence 1 2244566799997643 33444 667777777765 112 22335778888877666555
No 375
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.87 E-value=0.087 Score=51.41 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 291 KVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
.++++.+..++ ++||.++||| +.+.+.++..+|+|.+.+|+...
T Consensus 222 ~l~~~v~~~~~-----~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 222 DMREAVRLTAG-----RAKLEASGGI-NESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHHHhCC-----CCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 34455554422 7999999999 59999999999999999998543
No 376
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.86 E-value=0.041 Score=51.22 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=53.9
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
++..++++.+.+.|+..+.++-++ |.+++.++++++.++ + -
T Consensus 20 e~a~~~~~al~~~Gi~~iEit~~t--------------------------------~~a~~~i~~l~~~~~------~-~ 60 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEVTLRT--------------------------------PVALDAIRLLRKEVP------D-A 60 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC--------------------------------ccHHHHHHHHHHHCC------C-C
Confidence 356789999999999999887643 334677888887653 3 3
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEE
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQ 334 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~ 334 (422)
++|.|.|.+.+++.+++.+||+.+.
T Consensus 61 ~vGAGTVl~~~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 61 LIGAGTVLNPEQLRQAVDAGAQFIV 85 (204)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEEE
Confidence 7999999999999999999999884
No 377
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.15 Score=48.58 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=91.9
Q ss_pred HHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEEC---CCCCChHHHH---------
Q 014581 169 IDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT---PNITDITEPA--------- 236 (422)
Q Consensus 169 a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~---~~~~~~~~~a--------- 236 (422)
++++.+.|+|++-+=+..-.-..+- -++....++++....+.. ++|.++-.- +...|..+.+
T Consensus 117 a~riK~~G~~avK~Lvy~~~D~~e~-----neqk~a~ierigsec~ae-di~f~lE~ltyd~~~~d~~eyak~kp~kV~~ 190 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRSDEDEI-----NEQKLAYIERIGSECHAE-DLPFFLEPLTYDPRIGDKEEYAKRKPQKVIE 190 (306)
T ss_pred HHHHHHhcccceEEEEEEcCCchHH-----hHHHHHHHHHHHHHhhhc-CCceeEeeeecCCCCCChHHHHhhchHHHHH
Confidence 6788888999998865422111100 023334555555544433 899988643 2223332222
Q ss_pred --HHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce-EEEe
Q 014581 237 --RVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS-LSGI 313 (422)
Q Consensus 237 --~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip-IIa~ 313 (422)
+.+.+.|+|-+.+-- |. | ..|+ ++.++....+...+. ++| |+.+
T Consensus 191 a~k~fsd~GadvlKvev--------------Pv-----y-----veGe--~~ea~~~f~~~~~~~-------~lP~i~LS 237 (306)
T COG3684 191 AMKEFSDSGADVLKVEV--------------PV-----Y-----VEGE--QEEAAAAFQRQNDHI-------NLPWIYLS 237 (306)
T ss_pred HHHHhccCCCceEEeec--------------ce-----e-----ccCc--cHHHHHHHHHhhcCC-------CCCeEEEe
Confidence 333445555443321 11 0 1122 455555544444332 677 7889
Q ss_pred cCCCCH---HHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCCCHHHhh
Q 014581 314 GGVETG---GDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFR 370 (422)
Q Consensus 314 GGI~s~---~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~si~d~~ 370 (422)
-||..- +.+.=++.+||++|..||+..... ++.=.+..++||...||.+|+++-
T Consensus 238 AGV~~klF~~tv~fA~eaGAsGvL~GRAtWa~~---v~~g~d~~re~Lrt~g~~ni~eL~ 294 (306)
T COG3684 238 AGVSAKLFQRTVRFAMEAGASGVLAGRATWAGV---VEQGEDAAREWLRTVGFPNLDELN 294 (306)
T ss_pred cCccHHHhHHHHHHHHHcCCceeEechhhhhcc---cccCcHHHHHHHHhhccccHHHHH
Confidence 999752 334444569999999999988653 323345567899999999999873
No 378
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.83 E-value=0.1 Score=51.60 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECCCCCChHHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPNITDITEPAR 237 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~ 237 (422)
.+.+.+.+.++.+.+.|+|+|-++-+. |....-..+.-.++++.+.+.+ ++||++=+..+..+..+.++
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~Gst---------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~ 95 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGT---------GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQ 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCC---------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH
Confidence 467788899999999999999887431 2222334455556666665544 68999877654446788999
Q ss_pred HHHHcCCCEEEEecCCc
Q 014581 238 VALRSGSEGVSAINTIM 254 (422)
Q Consensus 238 ~l~~aGadgi~v~n~~~ 254 (422)
.++++|+|++.+.....
T Consensus 96 ~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 96 AAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHhCCCEEEECCCCC
Confidence 99999999998876543
No 379
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=95.82 E-value=0.2 Score=48.73 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=113.6
Q ss_pred CCceecCCCCC-CCHHH----HHHHHHcCC--c---EEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccc
Q 014581 58 NPFVIGSGPPG-TNYTV----MKRAFDEGW--G---AVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIEL 127 (422)
Q Consensus 58 nPi~~AAg~~~-~~~~~----~~~~~~~G~--G---avv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~ 127 (422)
.|+++=+||-+ .+.+. .+++.+.+. + .++.|..+.+| + ....||+.++
T Consensus 15 ~~l~viaGPCsies~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~Kp-R--------------------ts~~~f~G~g- 72 (270)
T PF00793_consen 15 KRLLVIAGPCSIESEEQALEYAERLKELGEKLGDRIPLRMRAYFEKP-R--------------------TSPYSFQGLG- 72 (270)
T ss_dssp SSEEEEEEESB-S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC-T-T--------------------SSTTST-CST-
T ss_pred CceEEEEECCccCCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecCC-c--------------------cCCCCCCCCC-
Confidence 57777777765 34443 334444443 3 67777766544 1 1123455444
Q ss_pred cCCChHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHH
Q 014581 128 ISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLE 207 (422)
Q Consensus 128 ~s~~~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~ 207 (422)
.+..++.+.++++.+ +.|++.=+.. +... +.+.+. +|.+.|.. ...++.+.++
T Consensus 73 -----~d~~L~~l~~v~~~~-glpv~tEv~~---~~~~----~~~~d~-vd~lqIgA-------------r~~~n~~ll~ 125 (270)
T PF00793_consen 73 -----LDPGLDILSEVKEGL-GLPVATEVLD---PEQA----EYVADL-VDWLQIGA-------------RLMENQDLLE 125 (270)
T ss_dssp -----HHHHHHHHHHHHHHH-T-EEEEEESS---GGGH----HHHHTT-ESEEEE-G-------------GGTTCHHHHH
T ss_pred -----CCccchhHHHHHhhh-CCeeeEEecC---cccH----HHHHhc-CcEEEECc-------------chhcCHHHHH
Confidence 677778888888876 8899988862 3332 223343 88888752 1123333333
Q ss_pred HHHHHHhhccCccEEEEECCCC--CChHHHHHHHHHcCC-CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 208 EVCGWINAKATVPVWAKMTPNI--TDITEPARVALRSGS-EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 208 ~iv~~vr~~~~iPv~vKl~~~~--~~~~~~a~~l~~aGa-dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
.+ ..+++||.+|=..+. .++...++.....|+ .++.+.-+... +|+ ++.-
T Consensus 126 ~a-----s~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr---------------------~g~-~~n~ 178 (270)
T PF00793_consen 126 AA-----SGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLR---------------------GGY-GPNY 178 (270)
T ss_dssp HH-----HCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEE---------------------ESS-SSSS
T ss_pred Hh-----ccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeee---------------------ccc-cccc
Confidence 22 235899999976542 245666777888895 76665543321 122 2221
Q ss_pred chhHHHHHHHHHHHhhccCCCCCceEEEecC----CCC-------HHHHHHHHHhCCCEEEEhhH
Q 014581 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGG----VET-------GGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 285 ~p~al~~v~~i~~~~~~~~~~~~ipIIa~GG----I~s-------~~da~~~l~aGAd~V~vgta 338 (422)
....++.+..+++.. ++|||..-. -.. +..+.+++++|++++|+=+-
T Consensus 179 ~~~di~~~~~~~~~~-------~lpVivD~SH~~~~~~~~~q~~V~~~a~aaia~GidGlmiEsH 236 (270)
T PF00793_consen 179 NVLDIAAVPIMKKKT-------HLPVIVDPSHANSRKDGGRQELVPPLARAAIAAGIDGLMIESH 236 (270)
T ss_dssp EEHHTTHHHHHHHHT-------SSEEEEEHHHHTTTCGGGGHCGHHHHHHHHHHHTESEEEEEEE
T ss_pred cchhHHHHHHHHHhc-------CCCEEECchhhhccccCCchhhHHHHHHHHHhhcCCEEEEeec
Confidence 233344455555543 689998643 333 67888999999999999763
No 380
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.77 E-value=0.7 Score=44.18 Aligned_cols=162 Identities=16% Similarity=0.103 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARV 238 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~ 238 (422)
.+.++..++++.+.++|+|.||+-...|.... ... +...++++.+++.. +.++.+ +..+ -.+.++.
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~------p~~---~~~~~~i~~l~~~~~~~~~~~-l~~~---~~~~i~~ 82 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAV------PQM---EDDWEVLRAIRKLVPNVKLQA-LVRN---REKGIER 82 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCcccc------ccC---CCHHHHHHHHHhccCCcEEEE-EccC---chhhHHH
Confidence 46788899999999999999999876543110 001 12345566665554 344433 2222 2567888
Q ss_pred HHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEec-CC-
Q 014581 239 ALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIG-GV- 316 (422)
Q Consensus 239 l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~G-GI- 316 (422)
+.++|++.|.++-.... ...+.. ...+.. ......++.++.+++. ++.+..+- .+
T Consensus 83 a~~~g~~~i~i~~~~s~---~~~~~~----------~~~~~~--~~~~~~~~~i~~a~~~--------G~~v~~~~~~~~ 139 (265)
T cd03174 83 ALEAGVDEVRIFDSASE---THSRKN----------LNKSRE--EDLENAEEAIEAAKEA--------GLEVEGSLEDAF 139 (265)
T ss_pred HHhCCcCEEEEEEecCH---HHHHHH----------hCCCHH--HHHHHHHHHHHHHHHC--------CCeEEEEEEeec
Confidence 99999999987754321 000000 000000 0012233444333332 34444433 33
Q ss_pred ---CCHHHHHHH----HHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHH
Q 014581 317 ---ETGGDAAEF----ILLGANTVQVCTGVMMHGYGLVKRLCEELKDF 357 (422)
Q Consensus 317 ---~s~~da~~~----l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~ 357 (422)
.+.+++.++ ..+|++.|.++-..-.--|.-+.++.+.+.+.
T Consensus 140 ~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 140 GCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 445554443 45799999988443333377777776666543
No 381
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.76 E-value=0.11 Score=51.90 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhCC----CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC------Ccccccccccc-
Q 014581 133 LETMLKEFKQLKALYP----DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM------PERKMGAAVGQ- 201 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~----~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~------~~~~~G~~l~~- 201 (422)
.+.+.+.++.+++... +.||++-+....+.++..++++.++++|+|+|.+.-..+... .....|+ +..
T Consensus 182 ~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG-~sG~ 260 (327)
T cd04738 182 KEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGG-LSGA 260 (327)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCc-cCCh
Confidence 3444444555555432 489999997545667888999999999999999753211110 0011111 111
Q ss_pred -ChhHHHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 202 -DCRLLEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 202 -~~~~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
......+.+..+++.+ ++||+. ...+.+.....+.+ .+|||+|.+.
T Consensus 261 ~~~~~~l~~v~~l~~~~~~~ipIi~--~GGI~t~~da~e~l-~aGAd~V~vg 309 (327)
T cd04738 261 PLKERSTEVLRELYKLTGGKIPIIG--VGGISSGEDAYEKI-RAGASLVQLY 309 (327)
T ss_pred hhhHHHHHHHHHHHHHhCCCCcEEE--ECCCCCHHHHHHHH-HcCCCHHhcc
Confidence 1113345667777776 678765 56666655555555 5999988554
No 382
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.73 E-value=0.13 Score=51.14 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECC-CCCChHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTP-NITDITEPA 236 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~-~~~~~~~~a 236 (422)
.+.+.+.+.++.+.+.|+++|-++-+. |....-+.+.-.++++.+++.+ ++||++=+.. +..+..+++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~Gst---------GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a 96 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTF---------GECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIART 96 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc---------ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHH
Confidence 356788889999988999999987431 2223334455566666665544 6899998874 334578899
Q ss_pred HHHHHcCCCEEEEecCC
Q 014581 237 RVALRSGSEGVSAINTI 253 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~~ 253 (422)
+.+.++|+|++.++...
T Consensus 97 ~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 97 RALLDLGADGTMLGRPM 113 (309)
T ss_pred HHHHHhCCCEEEECCCc
Confidence 99999999999988654
No 383
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=95.70 E-value=0.52 Score=47.68 Aligned_cols=150 Identities=14% Similarity=0.133 Sum_probs=89.7
Q ss_pred CCeEEEEeCCCCCHH--HH-HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEE
Q 014581 149 DKILIASIMEEYNKA--AW-EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAK 224 (422)
Q Consensus 149 ~~pvi~si~~~~~~~--~~-~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vK 224 (422)
+.|++++=|.+-+.. ++ .++|+.++++|... .+++- .....+++ .++-++.+|+.. +.|+++=
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~---~~Gs~---------~~~~~~~~-~~~~~~~vr~~~p~~p~~aN 126 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIAM---GVGSQ---------RAALKDPE-LADSFSVVRKVAPDGLLFAN 126 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcCCCe---Eeccc---------HhhccChh-hHHHHHHHHHHCCCceEEee
Confidence 568887655343332 22 56677777766432 12110 11124566 677777888876 8999986
Q ss_pred ECCCCC---ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhc
Q 014581 225 MTPNIT---DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKS 301 (422)
Q Consensus 225 l~~~~~---~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~ 301 (422)
+...-. +...+.+++...++|++.++=...+ +-.. +.+.. -....++.++.+++.+
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~q------e~~~----------p~g~~---~f~~~le~i~~i~~~~-- 185 (352)
T PRK05437 127 LGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQ------ELVQ----------PEGDR---DFRGWLDNIAEIVSAL-- 185 (352)
T ss_pred cCccccCCCCHHHHHHHHHhcCCCcEEEeCccch------hhcC----------CCCcc---cHHHHHHHHHHHHHhh--
Confidence 654211 2466777778889999877521111 0001 11110 0112346677777765
Q ss_pred cCCCCCceEEE--ecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 302 EFNDKDYSLSG--IGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 302 ~~~~~~ipIIa--~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
++||+. +|.-.+.+++..+..+|+|+|.++.
T Consensus 186 -----~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 186 -----PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred -----CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 788886 5555779999999999999999954
No 384
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.70 E-value=0.12 Score=50.51 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=59.2
Q ss_pred HHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc
Q 014581 206 LEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285 (422)
Q Consensus 206 v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~ 285 (422)
+.+-++.+|+.......+=++. .+ .+-++.+.+.|+|+|.+-| +
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv--~t-leea~~A~~~gaDyI~lD~-~-------------------------------- 217 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVET--ET-EEQVREAVAAGADIIMFDN-R-------------------------------- 217 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEe--CC-HHHHHHHHHcCCCEEEECC-C--------------------------------
Confidence 4455556666543222222232 23 3456777899999995521 0
Q ss_pred hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
.++.++++++.+.. ++||.++||| +.+.+.++..+|+|.|.+|+...
T Consensus 218 --~~e~l~~~~~~~~~-----~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 218 --TPDEIREFVKLVPS-----AIVTEASGGI-TLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred --CHHHHHHHHHhcCC-----CceEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 12445566665421 5889999999 69999999999999999998544
No 385
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.69 E-value=0.074 Score=49.87 Aligned_cols=86 Identities=24% Similarity=0.258 Sum_probs=62.7
Q ss_pred HHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 209 VCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 209 iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
+.+.+.+..=+||+.- .+.++..++++.+.+.|++.|-++-+. |.+
T Consensus 8 ~~~~l~~~~~iaV~r~--~~~~~a~~i~~al~~~Gi~~iEitl~~--------------------------------~~~ 53 (212)
T PRK05718 8 IEEILRAGPVVPVIVI--NKLEDAVPLAKALVAGGLPVLEVTLRT--------------------------------PAA 53 (212)
T ss_pred HHHHHHHCCEEEEEEc--CCHHHHHHHHHHHHHcCCCEEEEecCC--------------------------------ccH
Confidence 4444544433555443 223467889999999999999877432 334
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEE
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQV 335 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~v 335 (422)
++.|+++++.++ + -+|+.|.|.+.+++.+++.+||+.+..
T Consensus 54 ~~~I~~l~~~~p------~-~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 54 LEAIRLIAKEVP------E-ALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HHHHHHHHHHCC------C-CEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 677888887763 3 489999999999999999999998774
No 386
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.69 E-value=1.4 Score=43.23 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=102.0
Q ss_pred HHHHHHh---------CCCEEEEccCC---CCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC---hH
Q 014581 169 IDRVEET---------GIDAIEVNFSC---PHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD---IT 233 (422)
Q Consensus 169 a~~~~~a---------GaD~iElN~sc---P~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~---~~ 233 (422)
|+.++++ |++++-+--++ -...+ +.| + -..+...+.++.|...+++||++-.-.. .+ +.
T Consensus 22 A~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~p--D~~--~-~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~ 95 (285)
T TIGR02320 22 ALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVP--DIE--E-ASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFR 95 (285)
T ss_pred HHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCC--CcC--c-CCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHH
Confidence 4666777 99998874211 11111 111 1 1233344456666677799999977554 34 45
Q ss_pred HHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEe
Q 014581 234 EPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGI 313 (422)
Q Consensus 234 ~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~ 313 (422)
+.++.+.++|+.||.+-...... .. +..++.....+.+.. +.+.+++.+...+. +.+++|++-
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk------~c---------g~~~~~~~~~l~s~e-e~~~kI~Aa~~a~~-~~~~~IiAR 158 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLK------KN---------SLFGNDVAQPQASVE-EFCGKIRAGKDAQT-TEDFMIIAR 158 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCc------cc---------cccCCCCcccccCHH-HHHHHHHHHHHhcc-CCCeEEEEe
Confidence 66888999999999875532110 00 001111011122222 34445544432211 136888887
Q ss_pred cC----CCCHHHHH----HHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHH---------HHHHcCCCCHHHhhcCCccc
Q 014581 314 GG----VETGGDAA----EFILLGANTVQVCTGVMMHGYGLVKRLCEELKD---------FMKMHNFSSIEDFRGASIEY 376 (422)
Q Consensus 314 GG----I~s~~da~----~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~---------~m~~~G~~si~d~~G~~~~~ 376 (422)
-. -...++++ .|..+|||+|.+-.. ... +.-+.++.+.+.. .+...+..+++|+.-.....
T Consensus 159 TDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~-~~~-~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~ 236 (285)
T TIGR02320 159 VESLILGKGMEDALKRAEAYAEAGADGIMIHSR-KKD-PDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISV 236 (285)
T ss_pred cccccccCCHHHHHHHHHHHHHcCCCEEEecCC-CCC-HHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCE
Confidence 22 22355554 455689999999621 122 4556666666542 12223666888888776666
Q ss_pred CCChhHHHHH
Q 014581 377 FTTHTELVRM 386 (422)
Q Consensus 377 ~~~~~~~~~~ 386 (422)
+.-...+.+.
T Consensus 237 v~~~~~~~~a 246 (285)
T TIGR02320 237 VIYANHLLRA 246 (285)
T ss_pred EEEhHHHHHH
Confidence 5533333333
No 387
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.67 E-value=2.4 Score=41.59 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 134 e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
+.+...++.+.+++. +.||.+.+--+.+.+. ++++.++|+.-+-++.|.- .++.+.+..+++++.
T Consensus 61 ~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~----i~~ai~~GftSVM~DgS~l----------p~eeNi~~Trevv~~ 126 (285)
T PRK07709 61 KTVVAMVKALIEEMNITVPVAIHLDHGSSFEK----CKEAIDAGFTSVMIDASHH----------PFEENVETTKKVVEY 126 (285)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCCC----------CHHHHHHHHHHHHHH
Confidence 444444555544442 3699999964444443 2344567999888886521 123455667777766
Q ss_pred HhhccCccEEEEEC-------------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 213 INAKATVPVWAKMT-------------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 213 vr~~~~iPv~vKl~-------------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
.+.. +++|=.=|. ..++++.+..+.+.+.|+|.+-+.-.+. .|-|
T Consensus 127 Ah~~-gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~---------------------HG~Y 184 (285)
T PRK07709 127 AHAR-NVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSV---------------------HGPY 184 (285)
T ss_pred HHHc-CCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeeccc---------------------ccCc
Confidence 5542 444322111 1156777777778889999987653221 2333
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCH-HHHHHHHHhCCCEEEEhhHHHhh
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETG-GDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~-~da~~~l~aGAd~V~vgtall~~ 342 (422)
.|++ .+.++.+++|++.+ ++|++.=||=..+ +|+.+++..|..=|=++|.+...
T Consensus 185 ~~~p--~L~~~~L~~I~~~~-------~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 239 (285)
T PRK07709 185 KGEP--NLGFAEMEQVRDFT-------GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIE 239 (285)
T ss_pred CCCC--ccCHHHHHHHHHHH-------CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 3322 24456778888876 7888888876666 77888999999999999988654
No 388
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.66 E-value=0.05 Score=50.52 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
++..++++.+.+.|+..|-++.++ |.+++.|+++++.++ + -
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~t--------------------------------p~a~~~I~~l~~~~~------~-~ 56 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLRT--------------------------------PAALDAIRAVAAEVE------E-A 56 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC--------------------------------ccHHHHHHHHHHHCC------C-C
Confidence 357789999999999999887653 334677888887663 3 4
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEE
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQ 334 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~ 334 (422)
+||.|.|.+.+++.+++.+||+.+.
T Consensus 57 ~vGAGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 57 IVGAGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred EEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 8999999999999999999999876
No 389
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.63 E-value=2.4 Score=41.36 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+.+ ..||.+.+--+.+.+.. .++.++|++-|-++.|.- .++.+.+..+++++.
T Consensus 54 ~~~~~~~~~~~a~~~-~VPV~lHLDH~~~~~~i----~~ai~~GftSVMiD~S~l----------~~eeNi~~t~~vv~~ 118 (276)
T cd00947 54 LELLVAMVKAAAERA-SVPVALHLDHGSSFELI----KRAIRAGFSSVMIDGSHL----------PFEENVAKTKEVVEL 118 (276)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEECCCCCCHHHH----HHHHHhCCCEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 455555555555555 78999999645454443 334467999998886531 123455667777766
Q ss_pred HhhccCccEEEEE---C----------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 213 INAKATVPVWAKM---T----------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 213 vr~~~~iPv~vKl---~----------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
.+.. +++|=.=+ . ..++++.+..+.+.+.|+|.+.+.-.+. .|.|
T Consensus 119 ah~~-gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~---------------------HG~Y 176 (276)
T cd00947 119 AHAY-GVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTS---------------------HGAY 176 (276)
T ss_pred HHHc-CCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcc---------------------cccc
Confidence 6543 33332211 0 1245667766777788999987653221 1222
Q ss_pred CC-CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCH-HHHHHHHHhCCCEEEEhhHHHhh
Q 014581 280 SC-KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETG-GDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 280 sG-~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~-~da~~~l~aGAd~V~vgtall~~ 342 (422)
.+ .+ .+.++.++++++.+ ++|+..=||=..+ +++.+++..|..=|=++|.+...
T Consensus 177 ~~~~p--~L~~~~L~~i~~~~-------~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 232 (276)
T cd00947 177 KGGEP--KLDFDRLKEIAERV-------NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLA 232 (276)
T ss_pred CCCCC--ccCHHHHHHHHHHh-------CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 22 11 23467788888887 6888877776666 56999999999999999998654
No 390
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=95.61 E-value=0.59 Score=49.01 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHH------hC-----CCEEEEhhHHHh
Q 014581 287 IALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFIL------LG-----ANTVQVCTGVMM 341 (422)
Q Consensus 287 ~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~------aG-----Ad~V~vgtall~ 341 (422)
+-|..-.++|+.- ++-+|..|||-+++|+..||- .| .|++.+||++|.
T Consensus 200 llL~tYs~lR~~~-------NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 200 LLLATYSELRSRD-------NIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred HHHHHHHHHhcCC-------CEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHh
Confidence 3344445555532 799999999999999999983 23 789999999986
No 391
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.59 E-value=0.11 Score=50.49 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=58.5
Q ss_pred HHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc
Q 014581 208 EVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285 (422)
Q Consensus 208 ~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~ 285 (422)
.-++.+|+.. ..+|.|=. .+. +-++.+.++|+|.|-+-|-+
T Consensus 170 ~~v~~~r~~~~~~~~Igvev----~s~-eea~~A~~~gaDyI~ld~~~-------------------------------- 212 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEV----ETL-EQLKEALEAGADIIMLDNMS-------------------------------- 212 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEE----CCH-HHHHHHHHcCCCEEEECCcC--------------------------------
Confidence 3445555544 23444432 233 44667789999998654311
Q ss_pred hhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
.+.++++.+.+.+ ++||.++||| +.+.+.++..+|+|.+.+++...
T Consensus 213 ---~e~l~~~~~~~~~-----~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 213 ---PEELREAVALLKG-----RVLLEASGGI-TLENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred ---HHHHHHHHHHcCC-----CCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeec
Confidence 2345555555432 5899999999 59999999999999999998544
No 392
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=95.59 E-value=0.19 Score=51.59 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=61.0
Q ss_pred HHHHHhhCCCCeEEEEeCC---CCCHHHHHHHHHHHHHhCCCEEEEc--cCCCCCCCccccccccccChhHHHHHHHHHh
Q 014581 140 FKQLKALYPDKILIASIME---EYNKAAWEELIDRVEETGIDAIEVN--FSCPHGMPERKMGAAVGQDCRLLEEVCGWIN 214 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~---~~~~~~~~~~a~~~~~aGaD~iElN--~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr 214 (422)
++++-.. +++|++.+|.. |.+++++.+++..+...|+|.|-=+ +..|.. ..++.+...+.+.++...
T Consensus 134 ~R~llgv-~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~-------~p~~eRv~~~~~a~~~a~ 205 (406)
T cd08207 134 TRRLTGV-EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPY-------SPLDERVRAVMRVINDHA 205 (406)
T ss_pred HHHHhCC-CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC-------CcHHHHHHHHHHHHHHHH
Confidence 4444433 48999998753 5689999999999988899998432 211110 011222233334444444
Q ss_pred hccCcc--EEEEECCCCCChHHHHHHHHHcCCCEEEE
Q 014581 215 AKATVP--VWAKMTPNITDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 215 ~~~~iP--v~vKl~~~~~~~~~~a~~l~~aGadgi~v 249 (422)
+.+... ..+-++.+..++.+-++.+.++|++++.+
T Consensus 206 ~eTG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~mv 242 (406)
T cd08207 206 QRTGRKVMYAFNITDDIDEMRRNHDLVVEAGGTCVMV 242 (406)
T ss_pred HhhCCcceEEEecCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 445333 45556655445666678889999987743
No 393
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.59 E-value=2.5 Score=41.39 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+++ +.||.+.+--+.+.+. ++++.++|+.-|-++-|.- .++.+.+..+++++.
T Consensus 57 ~~~~~~~~~~~a~~~-~VPValHLDHg~~~e~----i~~ai~~GFtSVM~DgS~l----------p~eeNi~~T~~vv~~ 121 (282)
T TIGR01858 57 TEYIVALCSAASTTY-NMPLALHLDHHESLDD----IRQKVHAGVRSAMIDGSHF----------PFAQNVKLVKEVVDF 121 (282)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEECCCCCCHHH----HHHHHHcCCCEEeecCCCC----------CHHHHHHHHHHHHHH
Confidence 444555555555555 7899999964444433 4555567999998886531 123455666677765
Q ss_pred HhhccCccEEEEEC---------------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 213 INAKATVPVWAKMT---------------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 213 vr~~~~iPv~vKl~---------------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
.+.. +++|=.=|. ..++++.+..+.+.+.|+|.+-+.-.+ ..|
T Consensus 122 Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt---------------------~HG 179 (282)
T TIGR01858 122 CHRQ-DCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGT---------------------AHG 179 (282)
T ss_pred HHHc-CCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCc---------------------ccc
Confidence 5432 333321110 114566777777788999998665322 123
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC-HHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET-GGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s-~~da~~~l~aGAd~V~vgtall~~ 342 (422)
-|.+++ .+.++.+++|++.+ ++|++.=||=.. -+++.+++..|..=|=++|.+...
T Consensus 180 ~yk~~p--~Ldf~~L~~I~~~~-------~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 236 (282)
T TIGR01858 180 LYKKTP--KLDFDRLAEIREVV-------DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIA 236 (282)
T ss_pred CcCCCC--ccCHHHHHHHHHHh-------CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 333322 34567788888876 677776665443 566888999999999999998754
No 394
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.59 E-value=0.23 Score=48.92 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccC--CCCCCCc-------ccccccccc-C
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFS--CPHGMPE-------RKMGAAVGQ-D 202 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~s--cP~~~~~-------~~~G~~l~~-~ 202 (422)
.+...+.++.+++.. +.||.+-+. .+.++..++++.++++|+|+|.+.-. ....... ...|+.-+. .
T Consensus 142 ~~~~~eiv~~vr~~~-~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~ 218 (300)
T TIGR01037 142 PELSADVVKAVKDKT-DVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAI 218 (300)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhh
Confidence 445555666777654 789999885 35567889999999999999997521 1110000 001111011 1
Q ss_pred hhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 203 CRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 203 ~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.....+.+..+++.+++||+. ..++.+... +..+.++|||+|.+.
T Consensus 219 ~~~~l~~v~~i~~~~~ipvi~--~GGI~s~~d-a~~~l~~GAd~V~ig 263 (300)
T TIGR01037 219 KPIALRMVYDVYKMVDIPIIG--VGGITSFED-ALEFLMAGASAVQVG 263 (300)
T ss_pred hHHHHHHHHHHHhcCCCCEEE--ECCCCCHHH-HHHHHHcCCCceeec
Confidence 112235666777777899886 455655544 555556999988654
No 395
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.56 E-value=0.59 Score=45.94 Aligned_cols=159 Identities=11% Similarity=0.103 Sum_probs=90.2
Q ss_pred HHHHHHhCCCEEEEccC---CCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC---hHHHHHHHHHc
Q 014581 169 IDRVEETGIDAIEVNFS---CPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD---ITEPARVALRS 242 (422)
Q Consensus 169 a~~~~~aGaD~iElN~s---cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~a 242 (422)
|+.++++|++++-+--+ .-.+.+ +.| + -..+.+.+.++.|.+.+++||++=+-..+.+ +.+.++.+.++
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~p--D~g--~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~a 102 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVP--DAN--I-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAA 102 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCC--Ccc--c-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHc
Confidence 56677889999987521 111111 111 0 2344555666777777899999988665554 44558889999
Q ss_pred CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC--CC-CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCC--
Q 014581 243 GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY--SC-KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVE-- 317 (422)
Q Consensus 243 Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~--sG-~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~-- 317 (422)
|+.||.+=..... + ..|+ .| +.+.+.. +.+.+|+.+...+. ..++-|++=-...
T Consensus 103 Gvagi~IEDq~~p------k-------------~cg~~~~g~~~l~~~e-e~~~kI~Aa~~a~~-~~d~~I~ARTDa~~~ 161 (290)
T TIGR02321 103 GASAIVMEDKTFP------K-------------DTSLRTDGRQELVRIE-EFQGKIAAATAARA-DRDFVVIARVEALIA 161 (290)
T ss_pred CCeEEEEeCCCCC------c-------------ccccccCCCccccCHH-HHHHHHHHHHHhCC-CCCEEEEEEeccccc
Confidence 9999977653211 0 0111 22 2233332 34555554432211 1256666543332
Q ss_pred --CHHHHH----HHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHH
Q 014581 318 --TGGDAA----EFILLGANTVQVCTGVMMHGYGLVKRLCEELK 355 (422)
Q Consensus 318 --s~~da~----~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~ 355 (422)
..++++ .|..+|||+|.+-..+ .. +..++++.+++.
T Consensus 162 ~~g~deAI~Ra~aY~eAGAD~ifv~~~~-~~-~~ei~~~~~~~~ 203 (290)
T TIGR02321 162 GLGQQEAVRRGQAYEEAGADAILIHSRQ-KT-PDEILAFVKSWP 203 (290)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCC-CC-HHHHHHHHHhcC
Confidence 224543 4557899999996422 23 677778877764
No 396
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=95.54 E-value=0.33 Score=49.95 Aligned_cols=97 Identities=12% Similarity=0.162 Sum_probs=59.0
Q ss_pred CCCeEEEEeCC---CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCcc--EE
Q 014581 148 PDKILIASIME---EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP--VW 222 (422)
Q Consensus 148 ~~~pvi~si~~---~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iP--v~ 222 (422)
.++|++.+|.. |.+++++.+++..+...|+|.|-=+=...+. .+ ..++.+...+.+.++...+.+... ..
T Consensus 142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q----~~-~p~~eRv~~~~~a~~~a~~eTG~~~~ya 216 (412)
T TIGR03326 142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQ----PF-NRFEERVEKLYKVRDKVEAETGERKEYL 216 (412)
T ss_pred CCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCC----CC-ccHHHHHHHHHHHHHHHHHHhCCcceEE
Confidence 48999998753 5689999999999988899998643211111 00 011222333333343333445333 34
Q ss_pred EEECCCCCChHHHHHHHHHcCCCEEEE
Q 014581 223 AKMTPNITDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 223 vKl~~~~~~~~~~a~~l~~aGadgi~v 249 (422)
+-++....++.+-++.+.++|+.++.+
T Consensus 217 ~NiT~~~~em~~ra~~~~~~G~~~~mv 243 (412)
T TIGR03326 217 ANITAPVREMERRAELVADLGGQYVMV 243 (412)
T ss_pred EEecCCHHHHHHHHHHHHHhCCCeEEE
Confidence 566655545677788888999987744
No 397
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=95.52 E-value=0.8 Score=44.72 Aligned_cols=180 Identities=14% Similarity=0.067 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccC-CCCCCCccccccccccChhHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFS-CPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~s-cP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.++++.+.+.+++. +..+.++++ ..+. +.++++.++|+|.+-+++- .|.. ...... ..+.+...+.++.
T Consensus 97 ~~~~~~i~~~~~~~-~i~~~~~~g-~~~~----e~l~~Lk~aG~~~v~i~~E~~~~~--~~~i~~--~~s~~~~~~ai~~ 166 (296)
T TIGR00433 97 MEYVEAMVQIVEEM-GLKTCATLG-LLDP----EQAKRLKDAGLDYYNHNLDTSQEF--YSNIIS--THTYDDRVDTLEN 166 (296)
T ss_pred HHHHHHHHHHHHhC-CCeEEecCC-CCCH----HHHHHHHHcCCCEEEEcccCCHHH--HhhccC--CCCHHHHHHHHHH
Confidence 55666666665544 566666663 3343 4567788899999887763 1211 111100 1344555566666
Q ss_pred HhhccCccEEE----EECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 213 INAKATVPVWA----KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 213 vr~~~~iPv~v----Kl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
+++. ++++.+ -+.-+..+..+.++.+.+.|++.+.++.-.+. ++ ++. ..+..+. ....
T Consensus 167 l~~~-Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~-~g------T~l---------~~~~~~s-~~~~ 228 (296)
T TIGR00433 167 AKKA-GLKVCSGGIFGLGETVEDRIGLALALANLPPESVPINFLVKI-KG------TPL---------ADNKELS-ADDA 228 (296)
T ss_pred HHHc-CCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEc-CC------Ccc---------CCCCCCC-HHHH
Confidence 6654 566533 23222234667778888899998765532211 11 110 1111000 0122
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCC-CHHHHH-H-HHHhCCCEEEEhhHHHhhhhHHH
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVE-TGGDAA-E-FILLGANTVQVCTGVMMHGYGLV 347 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~-s~~da~-~-~l~aGAd~V~vgtall~~Gp~~i 347 (422)
++.+...+..++ +..|..++|=. ...+.. . ++.+||+.+++|--+...|-...
T Consensus 229 ~~~ia~~r~~lp------~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~~~ 284 (296)
T TIGR00433 229 LKTIALARIIMP------KAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNPEE 284 (296)
T ss_pred HHHHHHHHHHCC------cceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCCCc
Confidence 344455555554 33344444432 223333 3 68899999999988887764433
No 398
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=95.50 E-value=2.2 Score=42.19 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-CccEEEEECCC-------CCChHHHHHH
Q 014581 167 ELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPN-------ITDITEPARV 238 (422)
Q Consensus 167 ~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~-------~~~~~~~a~~ 238 (422)
+.++.+.++|+|.|-+.. ..+.+.+..+++.+++.. ++|+++-++.. -+++.+.+..
T Consensus 144 ~q~~~l~~~gvD~i~~ET---------------~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~ 208 (304)
T PRK09485 144 PRIEALAEAGADLLACET---------------IPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAAL 208 (304)
T ss_pred HHHHHHhhCCCCEEEEec---------------cCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHH
Confidence 346667778999987762 123456777888887543 89999876642 1246677777
Q ss_pred HHHcC-CCEEEEec
Q 014581 239 ALRSG-SEGVSAIN 251 (422)
Q Consensus 239 l~~aG-adgi~v~n 251 (422)
+.+.+ +++| .+|
T Consensus 209 l~~~~~~~~i-GiN 221 (304)
T PRK09485 209 LAASPQVVAV-GVN 221 (304)
T ss_pred HhcCCCceEE-Eec
Confidence 65543 4443 344
No 399
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.49 E-value=0.64 Score=44.43 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=82.6
Q ss_pred HHHHHHHhCCCEEEEccCCCCC-CCccccccccccChhHHHHHHHHHhhccC-ccEEEEECCCCCC----hHHHHHHHHH
Q 014581 168 LIDRVEETGIDAIEVNFSCPHG-MPERKMGAAVGQDCRLLEEVCGWINAKAT-VPVWAKMTPNITD----ITEPARVALR 241 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP~~-~~~~~~G~~l~~~~~~v~~iv~~vr~~~~-iPv~vKl~~~~~~----~~~~a~~l~~ 241 (422)
.|+.++++|+|+|=+.=+.... ....+. -.-..+.+...+++|++.++ .||++=+...+.+ ..+.++.+.+
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~---~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~ 100 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDDT---LPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMR 100 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCCC---CCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 3577788899999875221110 000000 01244566667777777765 7999988655432 4455888999
Q ss_pred cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCC----
Q 014581 242 SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVE---- 317 (422)
Q Consensus 242 aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~---- 317 (422)
+|+++|.+-+.. ...+.|+.++++ .++|++=-|..
T Consensus 101 aGa~gv~iED~~---------------------------------~~~~~i~ai~~a--------~i~ViaRtd~~pq~~ 139 (240)
T cd06556 101 AGAAGVKIEGGE---------------------------------WHIETLQMLTAA--------AVPVIAHTGLTPQSV 139 (240)
T ss_pred cCCcEEEEcCcH---------------------------------HHHHHHHHHHHc--------CCeEEEEeCCchhhh
Confidence 999999654310 011223333332 47777766652
Q ss_pred ------------------CHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHH
Q 014581 318 ------------------TGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELK 355 (422)
Q Consensus 318 ------------------s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~ 355 (422)
.-+.+..+..+|||++-+-.. . ...++++.+++.
T Consensus 140 ~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~---~-~e~~~~i~~~~~ 191 (240)
T cd06556 140 NTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV---P-VELAKQITEALA 191 (240)
T ss_pred hccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC---C-HHHHHHHHHhCC
Confidence 133455666789999988632 2 567777777653
No 400
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=95.48 E-value=1.4 Score=41.95 Aligned_cols=138 Identities=21% Similarity=0.232 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcC
Q 014581 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSG 243 (422)
Q Consensus 164 ~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG 243 (422)
+..++|..++.+|||+|.+++ ..+ .|- -+ .+-+..+++.++.|+=+-+.++ .++.+.+.+.-
T Consensus 23 dpv~aA~~a~~aGAdgITvHl---ReD-rRH-----I~-----d~Dv~~L~~~~~~~lNlE~a~t----~e~~~ia~~~k 84 (239)
T PF03740_consen 23 DPVEAARIAEEAGADGITVHL---RED-RRH-----IQ-----DRDVRRLRELVKTPLNLEMAPT----EEMVDIALKVK 84 (239)
T ss_dssp -HHHHHHHHHHTT-SEEEEEB----TT--SS-----S------HHHHHHHHHH-SSEEEEEEESS----HHHHHHHHHH-
T ss_pred CHHHHHHHHHHcCCCEEEecc---CCC-cCc-----CC-----HHHHHHHHHHcccCEEeccCCC----HHHHHHHHhCC
Confidence 356788888899999999995 221 111 01 1223344555577887877764 57788888888
Q ss_pred CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHH
Q 014581 244 SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAA 323 (422)
Q Consensus 244 adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~ 323 (422)
.+.+++.--... . ..+.||+.=..- ...++.+.+.+.+. +..+.++..- +.+++.
T Consensus 85 P~~vtLVPE~r~----------e------~TTegGldv~~~----~~~l~~~i~~L~~~--gIrvSLFiDP---~~~qi~ 139 (239)
T PF03740_consen 85 PDQVTLVPEKRE----------E------LTTEGGLDVAGN----RDRLKPVIKRLKDA--GIRVSLFIDP---DPEQIE 139 (239)
T ss_dssp -SEEEEE--SGG----------G------BSTTSSB-TCGG----HHHHHHHHHHHHHT--T-EEEEEE-S----HHHHH
T ss_pred cCEEEECCCCCC----------C------cCCCcCChhhcC----HHHHHHHHHHHHhC--CCEEEEEeCC---CHHHHH
Confidence 999987742211 1 123455532111 23344444444321 1245555554 488899
Q ss_pred HHHHhCCCEEEEhhHHHhhhh
Q 014581 324 EFILLGANTVQVCTGVMMHGY 344 (422)
Q Consensus 324 ~~l~aGAd~V~vgtall~~Gp 344 (422)
.+...|||.|.+.|+-+.+-+
T Consensus 140 ~A~~~Gad~VELhTG~yA~a~ 160 (239)
T PF03740_consen 140 AAKELGADRVELHTGPYANAF 160 (239)
T ss_dssp HHHHTT-SEEEEETHHHHHHS
T ss_pred HHHHcCCCEEEEehhHhhhhc
Confidence 999999999999999887633
No 401
>PRK06852 aldolase; Validated
Probab=95.46 E-value=0.42 Score=47.23 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=55.5
Q ss_pred cCccEEEEECC---CCC---C---hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 217 ATVPVWAKMTP---NIT---D---ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 217 ~~iPv~vKl~~---~~~---~---~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
..+|+++=+-| .+. + +...++.+.+.|||.|.+--+... .+|- +
T Consensus 166 ~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~--------------------~~g~------~- 218 (304)
T PRK06852 166 HGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKE--------------------GANP------A- 218 (304)
T ss_pred hCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcC--------------------CCCC------H-
Confidence 38998863322 111 1 455667889999998865432100 0010 1
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCC-CHHHHHH----HHH-hCCCEEEEhhHHHhh
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVE-TGGDAAE----FIL-LGANTVQVCTGVMMH 342 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~-s~~da~~----~l~-aGAd~V~vgtall~~ 342 (422)
+.++++.+.+. .+||+..||=. +.+|+++ ++. +||.+|.+||=++.+
T Consensus 219 --e~f~~vv~~~g------~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~ 271 (304)
T PRK06852 219 --ELFKEAVLAAG------RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQK 271 (304)
T ss_pred --HHHHHHHHhCC------CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcC
Confidence 23334555442 68888888866 4445554 456 899999999988876
No 402
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.45 E-value=0.31 Score=47.55 Aligned_cols=84 Identities=23% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECC-CCCChHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTP-NITDITEPA 236 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~-~~~~~~~~a 236 (422)
.+.+.+.+.++.+.+.|++++-++-+. |.......+.-.++++.+.+.+ ++||++=+.. +..+..+.+
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~Gst---------GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a 88 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTT---------GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELT 88 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC---------cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHH
Confidence 467788899999999999999988431 2223344555666776666655 5799987765 334578899
Q ss_pred HHHHHcCCCEEEEecC
Q 014581 237 RVALRSGSEGVSAINT 252 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~ 252 (422)
+.++++|+|+|.+...
T Consensus 89 ~~a~~~G~d~v~~~~P 104 (284)
T cd00950 89 KRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHcCCCEEEEccc
Confidence 9999999999988854
No 403
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.44 E-value=0.21 Score=48.72 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 206 LEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 206 v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
+.+.++.+|+.. .++|.|-. ++ .+-++.+.++|+|.|.+-|..
T Consensus 169 i~~av~~~r~~~~~~kIeVEv----~~-leea~~a~~agaDiI~LDn~~------------------------------- 212 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEV----ES-LEDALKAAKAGADIIMLDNMT------------------------------- 212 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEe----CC-HHHHHHHHHcCcCEEEECCCC-------------------------------
Confidence 445555555543 35566543 23 455777789999977555421
Q ss_pred chhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 285 ~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
| +.++++.+.+.......++.+.++||| +.+.+.++..+|+|.+.+|+...
T Consensus 213 -~---e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 213 -P---EEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred -H---HHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 1 122233332211100026889999999 79999999999999999998654
No 404
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.43 E-value=0.24 Score=47.09 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
++...+.++.+++ . +.||.+-+..+.+ ++..++++.++++|+|+|.+. +-.. | ...+.+ .++.
T Consensus 125 p~~l~eiv~avr~-~-~~pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv~--~~~~------g--~~ad~~----~I~~ 187 (233)
T cd02911 125 PERLSEFIKALKE-T-GVPVSVKIRAGVD-VDDEELARLIEKAGADIIHVD--AMDP------G--NHADLK----KIRD 187 (233)
T ss_pred HHHHHHHHHHHHh-c-CCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEEC--cCCC------C--CCCcHH----HHHH
Confidence 4555555666665 3 7899998875555 678889999999999987543 2111 1 011222 3333
Q ss_pred HhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 213 INAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 213 vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
++ +++||+. +.++.+... +..+.+.|+|+|.+.
T Consensus 188 i~--~~ipVIg--nGgI~s~ed-a~~~l~~GaD~VmiG 220 (233)
T cd02911 188 IS--TELFIIG--NNSVTTIES-AKEMFSYGADMVSVA 220 (233)
T ss_pred hc--CCCEEEE--ECCcCCHHH-HHHHHHcCCCEEEEc
Confidence 43 4789875 466666544 555556899998644
No 405
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.41 E-value=0.14 Score=51.59 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhhCC----CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC-----Cc-cccccccccC
Q 014581 133 LETMLKEFKQLKALYP----DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM-----PE-RKMGAAVGQD 202 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~----~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~-----~~-~~~G~~l~~~ 202 (422)
.+.+.+.++.+++... +.||++-+....+.++..++++.++++|+|+|.+.-..+... .. ...|+ +...
T Consensus 191 ~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg-~SG~ 269 (344)
T PRK05286 191 GEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGG-LSGR 269 (344)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCC-cccH
Confidence 3444445555555443 389999997555667889999999999999999964322110 00 01111 1111
Q ss_pred h--hHHHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 203 C--RLLEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 203 ~--~~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
+ ....+.++.+++.+ ++||+. ..++.+.....+.+ .+|||+|.+.
T Consensus 270 ~~~~~~l~~v~~l~~~~~~~ipIig--~GGI~s~eda~e~l-~aGAd~V~v~ 318 (344)
T PRK05286 270 PLFERSTEVIRRLYKELGGRLPIIG--VGGIDSAEDAYEKI-RAGASLVQIY 318 (344)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEE--ECCCCCHHHHHHHH-HcCCCHHHHH
Confidence 1 22345666777776 678775 56666665555555 5999987443
No 406
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.40 E-value=0.25 Score=49.41 Aligned_cols=111 Identities=10% Similarity=0.108 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCc-------cccccccccChhHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPE-------RKMGAAVGQDCRLL 206 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~-------~~~G~~l~~~~~~v 206 (422)
+.+.+.++.+++.. +.||++-+.. +..+..++++.++++|+|+|.+.-.-+..... .+.|-+-.......
T Consensus 149 ~~~~eiv~~v~~~~-~iPv~vKl~p--~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~a 225 (325)
T cd04739 149 QRYLDILRAVKSAV-TIPVAVKLSP--FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLP 225 (325)
T ss_pred HHHHHHHHHHHhcc-CCCEEEEcCC--CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHH
Confidence 34455666776654 7899999863 33467888999999999999885322221100 01110000111123
Q ss_pred HHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 207 EEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.+.+..+++.+++||+. ..++.+..+..+.+ .+||++|-+.
T Consensus 226 l~~v~~v~~~~~ipIig--~GGI~s~~Da~e~l-~aGA~~Vqv~ 266 (325)
T cd04739 226 LRWIAILSGRVKASLAA--SGGVHDAEDVVKYL-LAGADVVMTT 266 (325)
T ss_pred HHHHHHHHcccCCCEEE--ECCCCCHHHHHHHH-HcCCCeeEEe
Confidence 35566777777899886 46676766666666 4999999766
No 407
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.39 E-value=0.2 Score=48.80 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=28.6
Q ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEEEhhHH
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtal 339 (422)
++||.++|||. .+.+.++..+|||++.+++..
T Consensus 227 ~i~i~asGGIt-~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 227 RVLLEASGGIT-LENIRAYAETGVDVISTGALT 258 (269)
T ss_pred CeEEEEECCCC-HHHHHHHHHcCCCEEEEcHHH
Confidence 78999999995 999999999999999986443
No 408
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.37 E-value=3.1 Score=40.84 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+++ +.||.+.+--+.+.+ .++++.++|++-|-++-|.- .++.+.+..+++++.
T Consensus 59 ~~~~~~~~~~~A~~~-~VPV~lHLDHg~~~e----~i~~Ai~~GftSVM~DgS~l----------~~eeNi~~T~~vv~~ 123 (284)
T PRK09195 59 TEYLLAIVSAAAKQY-HHPLALHLDHHEKFD----DIAQKVRSGVRSVMIDGSHL----------PFAQNISLVKEVVDF 123 (284)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEECCCCCCHH----HHHHHHHcCCCEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 455555566666555 789999996444443 34445567999998886531 134555667777766
Q ss_pred HhhccCccEEEEEC---------------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 213 INAKATVPVWAKMT---------------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 213 vr~~~~iPv~vKl~---------------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
.+.. ++.|=.=|. ..++++.+..+.+.+.|+|.+.+.-.+. .|
T Consensus 124 Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~---------------------HG 181 (284)
T PRK09195 124 CHRF-DVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTA---------------------HG 181 (284)
T ss_pred HHHc-CCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCcc---------------------cc
Confidence 5543 333321110 1145666766777789999987653221 23
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC-HHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET-GGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s-~~da~~~l~aGAd~V~vgtall~~ 342 (422)
-|.|++ .+.++.+++|++.+ ++|++.=||=.. -+++.+++..|..=|=++|.+...
T Consensus 182 ~y~~~p--~Ld~~~L~~I~~~~-------~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 238 (284)
T PRK09195 182 MYKGEP--KLDFDRLENIRQWV-------NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIA 238 (284)
T ss_pred ccCCCC--cCCHHHHHHHHHHh-------CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 333322 24467788888876 677666555333 577888999999999999998743
No 409
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.36 E-value=0.28 Score=45.58 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCC-CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIME-EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~-~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..++|.++++...+.|+.+-+.. ..+.+....+++.+.++|+|+|-...+.+.. +.+++.++.+.+
T Consensus 100 ~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~----------~at~~~v~~~~~ 169 (203)
T cd00959 100 YEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPG----------GATVEDVKLMKE 169 (203)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCC----------CCCHHHHHHHHH
Confidence 46677788888877656787664432 2356777888888899999999988543321 133444444444
Q ss_pred HHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEE
Q 014581 212 WINAKATVPVWAKMTPNITDITEPARVALRSGSEGV 247 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi 247 (422)
.++ .|+-||.++...+ .+-+..+.++|++-|
T Consensus 170 ~~~----~~v~ik~aGGikt-~~~~l~~~~~g~~ri 200 (203)
T cd00959 170 AVG----GRVGVKAAGGIRT-LEDALAMIEAGATRI 200 (203)
T ss_pred HhC----CCceEEEeCCCCC-HHHHHHHHHhChhhc
Confidence 443 5778898887764 445666778888755
No 410
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.35 E-value=3 Score=40.65 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.++..+.++.+.+.. + ++++.++ ..+.++..+.++.+++.|+|++-+- .|..-. ..+.+.+.+..+.
T Consensus 51 ~eEr~~l~~~~~~~~-~-~vi~gvg-~~~~~~ai~~a~~a~~~Gad~v~v~--~P~y~~--------~~~~~~i~~yf~~ 117 (279)
T cd00953 51 FQEKLELLKAYSDIT-D-KVIFQVG-SLNLEESIELARAAKSFGIYAIASL--PPYYFP--------GIPEEWLIKYFTD 117 (279)
T ss_pred HHHHHHHHHHHHHHc-C-CEEEEeC-cCCHHHHHHHHHHHHHcCCCEEEEe--CCcCCC--------CCCHHHHHHHHHH
Confidence 455555555555543 3 3888886 5678888999999999999999753 233200 0134667777777
Q ss_pred HhhccCccEEEEECCCCCC---hHHHHHHHHHc--CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 213 INAKATVPVWAKMTPNITD---ITEPARVALRS--GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 213 vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~a--Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
|.+ ++|+++--.|..+. ..++.+++.+. .+-||.-+. +.
T Consensus 118 v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~s~-------------------------~d--------- 161 (279)
T cd00953 118 ISS--PYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKDTN-------------------------ED--------- 161 (279)
T ss_pred HHh--cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEeCc-------------------------cC---------
Confidence 777 89999976554331 34566666543 333332110 11
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHH
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCE 352 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~ 352 (422)
+..+.++.+..+ ++.|+ +| ..+.+...+.+||++...+.+-+. |..+.++.+
T Consensus 162 -~~~~~~~~~~~~------~~~v~-~G---~d~~~~~~l~~Ga~G~i~~~~n~~--P~~~~~l~~ 213 (279)
T cd00953 162 -ISHMLEYKRLVP------DFKVY-SG---PDSLIFSALRSGLDGSVAAASNYL--PEVFVKIKD 213 (279)
T ss_pred -HHHHHHHHHhCC------CeEEE-Ec---cHHHHHHHHHcCCCeEEechhhcc--HHHHHHHHH
Confidence 122333433321 45544 33 246677888999999999887553 555444443
No 411
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=95.33 E-value=0.65 Score=43.56 Aligned_cols=142 Identities=16% Similarity=0.181 Sum_probs=86.6
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCCH-HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc
Q 014581 139 EFKQLKALYPDKILIASIMEEYNK-AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA 217 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~~~~~-~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~ 217 (422)
.++.+++. ..++++-+.- .+. .....+++.+.+.|+|++.+|.... .+.++..++..++.-
T Consensus 41 ~i~~l~~~--~~~i~~DlK~-~DIg~tv~~~~~~~~~~gad~~Tvh~~~G---------------~~~l~~~~~~~~~~~ 102 (216)
T cd04725 41 IVKELREL--GFLVFLDLKL-GDIPNTVAAAAEALLGLGADAVTVHPYGG---------------SDMLKAALEAAEEKG 102 (216)
T ss_pred HHHHHHHC--CCcEEEEeec-CchHHHHHHHHHHHHhcCCCEEEECCcCC---------------HHHHHHHHHHHhccC
Confidence 35556654 3689988863 333 3344455666677999999985321 244566666554321
Q ss_pred -CccEEEEECCC-CC--------C----hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 218 -TVPVWAKMTPN-IT--------D----ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 218 -~iPv~vKl~~~-~~--------~----~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
.+=+++.++.. .. . ...+++.+.++|++|+++..+..
T Consensus 103 ~~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~----------------------------- 153 (216)
T cd04725 103 KGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEP----------------------------- 153 (216)
T ss_pred CeEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcch-----------------------------
Confidence 23345566521 10 0 24667788889999987765421
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC---------HHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET---------GGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s---------~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+. +++.... +++ +.+.||.- +.+..+++.+|++.+-+||.++..
T Consensus 154 ------~~---i~~~~~~-----~~~-~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a 206 (216)
T cd04725 154 ------EA---LRRALGP-----DFL-ILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQA 206 (216)
T ss_pred ------HH---HHHhhCC-----CCe-EEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccC
Confidence 11 1222211 444 77889873 226778888999999999999876
No 412
>PLN02979 glycolate oxidase
Probab=95.31 E-value=0.49 Score=47.82 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=80.3
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC--ChHHHHHHHHHcC
Q 014581 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT--DITEPARVALRSG 243 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~--~~~~~a~~l~~aG 243 (422)
..+|+.+.++|.-++-=++++ ..+++|.++ .+-|.+.++-..-+ -..++.++++++|
T Consensus 89 ~a~ARAA~~agi~~~lSt~ss-----------------~slEeIa~a----~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG 147 (366)
T PLN02979 89 YATARAASAAGTIMTLSSWAT-----------------SSVEEVAST----GPGIRFFQLYVYKNRNVVEQLVRRAERAG 147 (366)
T ss_pred HHHHHHHHHcCCCeeeccCcC-----------------CCHHHHHhc----cCCCeEEEEeecCCHHHHHHHHHHHHHcC
Confidence 367787878887665322221 114444332 24578888764322 2578889999999
Q ss_pred CCEEEEecCCcc--cccccccCCCCCC---CCCCC----------CccCC---C-CCCCcchhHHHHHHHHHHHhhccCC
Q 014581 244 SEGVSAINTIMS--VMGIDLKTLRPEP---CVEGY----------STPGG---Y-SCKAVHPIALGKVMSIAKMMKSEFN 304 (422)
Q Consensus 244 adgi~v~n~~~~--~~~id~e~~~p~~---~~~~~----------~~~gG---~-sG~~i~p~al~~v~~i~~~~~~~~~ 304 (422)
+.+|+++--.+. .-.-|..+.-..| ....+ ....+ + .+..-.+++++-|..+++..
T Consensus 148 ~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~----- 222 (366)
T PLN02979 148 FKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT----- 222 (366)
T ss_pred CCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc-----
Confidence 999988621110 0000111100000 00000 00000 0 01111245677788888765
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 305 DKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 305 ~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
++|||. .||.+++|+.+++.+|+|+|.+..
T Consensus 223 --~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 223 --KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred --CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 789775 567899999999999999999874
No 413
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.31 E-value=0.5 Score=46.45 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHhC-CCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECC-CCCChHHH
Q 014581 160 YNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTP-NITDITEP 235 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aG-aD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~-~~~~~~~~ 235 (422)
.+.+.+.+.++.+.+.| +|+|-++-+. |....-+.+.-.++++.+.+.+ ++||++=+.. +..+..+.
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~Gst---------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~l 88 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGST---------GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVEL 88 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCcc---------cccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHH
Confidence 46778889999998899 9999887431 2222334555556666655544 5899988753 34457889
Q ss_pred HHHHHHcCCCEEEEecCC
Q 014581 236 ARVALRSGSEGVSAINTI 253 (422)
Q Consensus 236 a~~l~~aGadgi~v~n~~ 253 (422)
++.+++.|+|++.+....
T Consensus 89 a~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 89 GKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHHhCCCEEEEeCCc
Confidence 999999999999987643
No 414
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.29 E-value=0.19 Score=48.46 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCcc-EEEEEC-CCCCC-h----HHHHHHHH
Q 014581 168 LIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP-VWAKMT-PNITD-I----TEPARVAL 240 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iP-v~vKl~-~~~~~-~----~~~a~~l~ 240 (422)
.|+.++++|+|+|-+.-+.-.. ..++-....-..+.+...++.|++.++.| |++=+. ..+.+ . ....+.++
T Consensus 24 sA~l~e~aG~d~i~vGds~~~~--~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~ 101 (254)
T cd06557 24 TAKLADEAGVDVILVGDSLGMV--VLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMK 101 (254)
T ss_pred HHHHHHHcCCCEEEECHHHHHH--HcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHH
Confidence 3577788899999643111100 00000001124456667777778888899 666664 22333 2 22334445
Q ss_pred HcCCCEEEEec
Q 014581 241 RSGSEGVSAIN 251 (422)
Q Consensus 241 ~aGadgi~v~n 251 (422)
++|+++|.+-+
T Consensus 102 ~aGa~aVkiEd 112 (254)
T cd06557 102 EAGADAVKLEG 112 (254)
T ss_pred HhCCeEEEEcC
Confidence 59999996543
No 415
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.26 E-value=3.3 Score=40.60 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+++ +.||.+.+--+.+.+ .++++.++|+.-|-++-|.- .++.+.+..+++++.
T Consensus 59 ~~~~~~~~~~~a~~~-~VPValHLDH~~~~e----~i~~ai~~GftSVMiDgS~l----------p~eeNi~~T~~vv~~ 123 (284)
T PRK12737 59 TDYIVAIAEVAARKY-NIPLALHLDHHEDLD----DIKKKVRAGIRSVMIDGSHL----------SFEENIAIVKEVVEF 123 (284)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEECCCCCCHH----HHHHHHHcCCCeEEecCCCC----------CHHHHHHHHHHHHHH
Confidence 344444455555555 789999996444433 34555567999888886531 123455667777776
Q ss_pred HhhccCccEEEEEC---------------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 213 INAKATVPVWAKMT---------------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 213 vr~~~~iPv~vKl~---------------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
.+.. ++.|=.=|. ..++++.+..+.+.+.|+|.+.+.-.+. .|
T Consensus 124 Ah~~-gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~---------------------HG 181 (284)
T PRK12737 124 CHRY-DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTA---------------------HG 181 (284)
T ss_pred HHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcc---------------------cc
Confidence 6543 333321110 1155677777778889999987653221 23
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC-HHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET-GGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s-~~da~~~l~aGAd~V~vgtall~~ 342 (422)
-|.|++ .+.++.++++++.+ ++|++.=||=.. -+++.+++..|..=|=++|.+...
T Consensus 182 ~y~~~p--~Ld~~~L~~I~~~~-------~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a 238 (284)
T PRK12737 182 LYKGEP--KLDFERLAEIREKV-------SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIA 238 (284)
T ss_pred ccCCCC--cCCHHHHHHHHHHh-------CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHH
Confidence 333321 24567788898876 677776665433 566888999999999999998654
No 416
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=95.25 E-value=0.5 Score=47.96 Aligned_cols=103 Identities=21% Similarity=0.150 Sum_probs=63.1
Q ss_pred HHHHHHhhCC-CCeEEEEeCC-------CCCHHHHHHHHHHHHHhC-CCEEEEccCCCCCCCccccccccccChhHHHHH
Q 014581 139 EFKQLKALYP-DKILIASIME-------EYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEV 209 (422)
Q Consensus 139 ~i~~~k~~~~-~~pvi~si~~-------~~~~~~~~~~a~~~~~aG-aD~iElN~scP~~~~~~~~G~~l~~~~~~v~~i 209 (422)
.++.+++..+ +.||++-+.. +.+.++..++++.+++.| +|.|.+--+.......... .. +......
T Consensus 205 Vv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~----~~-~~~~~~~ 279 (363)
T COG1902 205 VVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITV----SG-PGYQVEF 279 (363)
T ss_pred HHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccc----cc-cchhHHH
Confidence 3445554443 5689987752 345678899999999999 7999876443321110110 00 3334455
Q ss_pred HHHHhhccCccEEEEECCCCCChHHHHHHHHHcC-CCEEEE
Q 014581 210 CGWINAKATVPVWAKMTPNITDITEPARVALRSG-SEGVSA 249 (422)
Q Consensus 210 v~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~v 249 (422)
...++..+.+|+++=-. +.+ .+.|..+.+.| +|.|.+
T Consensus 280 a~~i~~~~~~pvi~~G~--i~~-~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 280 AARIKKAVRIPVIAVGG--IND-PEQAEEILASGRADLVAM 317 (363)
T ss_pred HHHHHHhcCCCEEEeCC--CCC-HHHHHHHHHcCCCCEEEe
Confidence 56677777899987432 333 56777777887 786643
No 417
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=95.24 E-value=0.77 Score=46.75 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhCC-CCeEEEEeCC--------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHH
Q 014581 136 MLKEFKQLKALYP-DKILIASIME--------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 206 (422)
Q Consensus 136 ~l~~i~~~k~~~~-~~pvi~si~~--------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v 206 (422)
.++.++.+++..+ +.||.+-+.. +.+.+++.++++.+++. +|++++..+......... . .......
T Consensus 203 ~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~---~-~~~~~~~ 277 (370)
T cd02929 203 WRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDS---R-FYPEGHQ 277 (370)
T ss_pred HHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCcccccccc---c-cCCcccc
Confidence 3455666666653 5678876641 13567888899999875 899999876432110000 0 0011123
Q ss_pred HHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcC-CCEEEEe
Q 014581 207 EEVCGWINAKATVPVWAKMTPNITDITEPARVALRSG-SEGVSAI 250 (422)
Q Consensus 207 ~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~v~ 250 (422)
.+..+.+|+.+++||++= ..+.+. +.++.+.+.| +|.|.+.
T Consensus 278 ~~~~~~ik~~~~~pvi~~--G~i~~~-~~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 278 EPYIKFVKQVTSKPVVGV--GRFTSP-DKMVEVVKSGILDLIGAA 319 (370)
T ss_pred HHHHHHHHHHCCCCEEEe--CCCCCH-HHHHHHHHcCCCCeeeec
Confidence 456677888889999873 445444 4555555555 8877543
No 418
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=95.22 E-value=3.4 Score=40.53 Aligned_cols=164 Identities=19% Similarity=0.241 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+++ +.||.+.+--+.+.+. ++++.++|+.-|-++-|.- .++.+.+..+++++.
T Consensus 59 ~~~~~~~~~~~a~~~-~VPValHLDHg~~~e~----i~~ai~~GFtSVM~DgS~l----------p~eeNi~~T~evv~~ 123 (286)
T PRK12738 59 LEEIYALCSAYSTTY-NMPLALHLDHHESLDD----IRRKVHAGVRSAMIDGSHF----------PFAENVKLVKSVVDF 123 (286)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEECCCCCCHHH----HHHHHHcCCCeEeecCCCC----------CHHHHHHHHHHHHHH
Confidence 445555555555555 7899999964444433 3445567999998886531 124555667777776
Q ss_pred HhhccCccEEEEE---------------CCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 213 INAKATVPVWAKM---------------TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 213 vr~~~~iPv~vKl---------------~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
.+.. +++|=.=| ...++++.+..+.+.+.|+|.+-+.-.+. .|
T Consensus 124 Ah~~-gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~---------------------HG 181 (286)
T PRK12738 124 CHSQ-DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTA---------------------HG 181 (286)
T ss_pred HHHc-CCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcc---------------------cC
Confidence 6542 33321111 01155677777777889999987653221 12
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC-HHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET-GGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s-~~da~~~l~aGAd~V~vgtall~~ 342 (422)
-|.+++ .+.++.+++|++.+ ++|+..=||=.. .+++.+++..|..=|=++|.+...
T Consensus 182 ~Y~~~p--~Ldfd~l~~I~~~~-------~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a 238 (286)
T PRK12738 182 LYSKTP--KIDFQRLAEIREVV-------DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIA 238 (286)
T ss_pred CCCCCC--cCCHHHHHHHHHHh-------CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 232211 24467788888876 677776665333 577888999999999999988754
No 419
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=95.19 E-value=0.22 Score=48.10 Aligned_cols=165 Identities=20% Similarity=0.276 Sum_probs=95.1
Q ss_pred CCCCC--CCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHHH
Q 014581 64 SGPPG--TNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFK 141 (422)
Q Consensus 64 Ag~~~--~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i~ 141 (422)
+|.++ .+.+.++.+.+.|+.+++++-=+.+|-- .-|-+.+. +.-.|.| ....+.+++.++
T Consensus 18 aG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~A---DGpvIq~A----------~~rAL~~-----G~~~~~~~~~~~ 79 (259)
T PF00290_consen 18 AGYPDLETTLEILKALEEAGADIIEIGIPFSDPVA---DGPVIQKA----------SQRALKN-----GFTLEKIFELVK 79 (259)
T ss_dssp TTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTT---SSHHHHHH----------HHHHHHT-----T--HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCC---CCHHHHHH----------HHHHHHC-----CCCHHHHHHHHH
Confidence 55553 2456778888899999999976666521 11322210 0011111 123788888899
Q ss_pred HHHhhCCCCeEEEEeCCCCCH----HHHHHHHHHHHHhCCCEEEEc-----------------------cCCCCCCCcc-
Q 014581 142 QLKALYPDKILIASIMEEYNK----AAWEELIDRVEETGIDAIEVN-----------------------FSCPHGMPER- 193 (422)
Q Consensus 142 ~~k~~~~~~pvi~si~~~~~~----~~~~~~a~~~~~aGaD~iElN-----------------------~scP~~~~~~- 193 (422)
++++..++.|+++=- |-. -.+.++++.+.++|+|++-+= +-.|++...|
T Consensus 80 ~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri 156 (259)
T PF00290_consen 80 EIRKKEPDIPIVLMT---YYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERI 156 (259)
T ss_dssp HHHHHCTSSEEEEEE----HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHH
T ss_pred HHhccCCCCCEEEEe---eccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHH
Confidence 998556688987422 211 123456677777888888771 1245442221
Q ss_pred --------c--c-----cc--ccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCC
Q 014581 194 --------K--M-----GA--AVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 253 (422)
Q Consensus 194 --------~--~-----G~--~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~ 253 (422)
+ | |. .-...+..+.+.++.+|+.+++||.+-.. +.+ .+.++.+. .|+||+++...+
T Consensus 157 ~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFG--I~~-~e~~~~~~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 157 KKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFG--IST-PEQAKKLA-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESS--S-S-HHHHHHHH-TTSSEEEESHHH
T ss_pred HHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecC--CCC-HHHHHHHH-ccCCEEEECHHH
Confidence 0 1 10 00123567899999999999999998543 333 45666666 999999876543
No 420
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.17 E-value=0.24 Score=44.74 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcc-Cc-cEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 206 LEEVCGWINAKA-TV-PVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 206 v~~iv~~vr~~~-~i-Pv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
+.+.++.+++.. .. +|.|-.. + .+-++.+.++|+|.|-+=|....
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~----~-~ee~~ea~~~g~d~I~lD~~~~~---------------------------- 112 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE----N-LEEAEEALEAGADIIMLDNMSPE---------------------------- 112 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES----S-HHHHHHHHHTT-SEEEEES-CHH----------------------------
T ss_pred HHHHHHHHHHhCCCCceEEEEcC----C-HHHHHHHHHhCCCEEEecCcCHH----------------------------
Confidence 556666666654 23 3666543 3 34577788899999866553210
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHh
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~ 341 (422)
...+.+..++. .. .++.|.++|||. .+.+.++...|+|.+.+|+....
T Consensus 113 ---~~~~~v~~l~~-~~-----~~v~ie~SGGI~-~~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 113 ---DLKEAVEELRE-LN-----PRVKIEASGGIT-LENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp ---HHHHHHHHHHH-HT-----TTSEEEEESSSS-TTTHHHHHHTT-SEEEECHHHHS
T ss_pred ---HHHHHHHHHhh-cC-----CcEEEEEECCCC-HHHHHHHHhcCCCEEEcChhhcC
Confidence 01123333322 22 269999999995 99999999999999999987654
No 421
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.16 E-value=0.44 Score=46.60 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECCC-CCChHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPN-ITDITEPA 236 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~-~~~~~~~a 236 (422)
.+.+.+.+.++++.+.|+++|-++-+. |....-..+.-.++++.+.+.+ ++||++=+... ..+..+.+
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~Gst---------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a 86 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTT---------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLT 86 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccC---------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHH
Confidence 467788899999888999999876321 2222233444445555554433 58999877653 33578899
Q ss_pred HHHHHcCCCEEEEecCC
Q 014581 237 RVALRSGSEGVSAINTI 253 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~~ 253 (422)
+.+++.|+|++.++...
T Consensus 87 ~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 87 KFAEDVGADGFLVVTPY 103 (285)
T ss_pred HHHHHcCCCEEEEcCCc
Confidence 99999999999988644
No 422
>PLN02417 dihydrodipicolinate synthase
Probab=95.14 E-value=3.5 Score=40.21 Aligned_cols=95 Identities=9% Similarity=-0.081 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++..+.++.+.+... ..||++.++ ..+.++..+.++.++++|+|++-+- .|.. ...+.+.+.+..+
T Consensus 53 ~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~i~~a~~a~~~Gadav~~~--~P~y---------~~~~~~~i~~~f~ 120 (280)
T PLN02417 53 WDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTREAIHATEQGFAVGMHAALHI--NPYY---------GKTSQEGLIKHFE 120 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEECC-CccHHHHHHHHHHHHHcCCCEEEEc--CCcc---------CCCCHHHHHHHHH
Confidence 4455555554444333 469999996 5678888999999999999999864 2432 1123466777777
Q ss_pred HHhhccCccEEEEECCCCCC---hHHHHHHHHH
Q 014581 212 WINAKATVPVWAKMTPNITD---ITEPARVALR 241 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~~~~~~---~~~~a~~l~~ 241 (422)
.|.+.. ||++--.|..+. ..++.+.+.+
T Consensus 121 ~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 121 TVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 777764 999876664321 2455555544
No 423
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.12 E-value=0.73 Score=43.02 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=92.3
Q ss_pred CCCceecCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHH
Q 014581 57 PNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETM 136 (422)
Q Consensus 57 ~nPi~~AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~ 136 (422)
.-|+-++| -+.+.+-.+.++|+-.+++|-+-. -| .-| . ....++.
T Consensus 61 ~lPICVSa----Vep~~f~~aV~AGAdliEIGNfDs----------FY--------------~qG-----r--~f~a~eV 105 (242)
T PF04481_consen 61 NLPICVSA----VEPELFVAAVKAGADLIEIGNFDS----------FY--------------AQG-----R--RFSAEEV 105 (242)
T ss_pred CCCeEeec----CCHHHHHHHHHhCCCEEEecchHH----------HH--------------hcC-----C--eecHHHH
Confidence 34777766 457778888889999998774421 00 001 0 0116788
Q ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCC---CCCCCccccccccccChhHHHHHHHHH
Q 014581 137 LKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSC---PHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 137 l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~sc---P~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
++.-++.|+..|+.++-+-|-.-...++=.++|..++++|+|.|+..-+. |... ...| -++.-.-.+ .-..++
T Consensus 106 L~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~--g~lg-lIekaapTL-Aaay~I 181 (242)
T PF04481_consen 106 LALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSP--GILG-LIEKAAPTL-AAAYAI 181 (242)
T ss_pred HHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCc--chHH-HHHHHhHHH-HHHHHH
Confidence 88888999889999998888533355666789999999999999986432 2211 0001 111110011 112234
Q ss_pred hhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 214 NAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 214 r~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
-+.+++||+.- ..+++ -.+..+..+||.||-+.
T Consensus 182 Sr~v~iPVlcA--SGlS~--vT~PmAiaaGAsGVGVG 214 (242)
T PF04481_consen 182 SRAVSIPVLCA--SGLSA--VTAPMAIAAGASGVGVG 214 (242)
T ss_pred HhccCCceEec--cCcch--hhHHHHHHcCCcccchh
Confidence 44569999873 33333 23566788999998543
No 424
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.09 E-value=0.26 Score=48.40 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHH-hCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECC-CCCChHHH
Q 014581 160 YNKAAWEELIDRVEE-TGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTP-NITDITEP 235 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~-aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~-~~~~~~~~ 235 (422)
.+.+.+.+.++++.+ .|+++|-++-+. |....-+.+.-.++++.+.+.+ ++||++=+.. +..+..++
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~Gst---------GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~ 91 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGST---------GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQEL 91 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCc---------cccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHH
Confidence 467888999999988 999999887431 2222233445555666555544 5899987754 33457889
Q ss_pred HHHHHHcCCCEEEEecCCc
Q 014581 236 ARVALRSGSEGVSAINTIM 254 (422)
Q Consensus 236 a~~l~~aGadgi~v~n~~~ 254 (422)
++.+.+.|+|++.++....
T Consensus 92 a~~a~~~Gad~v~v~~P~y 110 (293)
T PRK04147 92 AKYATELGYDAISAVTPFY 110 (293)
T ss_pred HHHHHHcCCCEEEEeCCcC
Confidence 9999999999999987543
No 425
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=95.08 E-value=3.8 Score=40.27 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+.+ +.||.+.+--+.+.+. ++++.+.|++-|-++.|.- .++.+.+..+++++.
T Consensus 58 ~~~~~~~~~~~a~~~-~vPValHLDH~~~~e~----i~~ai~~GftSVM~DgS~l----------~~eeNi~~T~~vv~~ 122 (287)
T PF01116_consen 58 LEYLAAMVKAAAEEA-SVPVALHLDHGKDFED----IKRAIDAGFTSVMIDGSAL----------PFEENIAITREVVEY 122 (287)
T ss_dssp HHHHHHHHHHHHHHS-TSEEEEEEEEE-SHHH----HHHHHHHTSSEEEEE-TTS-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCEEeecccCCCHHH----HHHHHHhCcccccccCCcC----------CHHHHHHHHHHHHHh
Confidence 455566666666666 7899999964445433 3444456999998887621 123455666677766
Q ss_pred HhhccCccEEEEEC----------------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCcc
Q 014581 213 INAKATVPVWAKMT----------------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTP 276 (422)
Q Consensus 213 vr~~~~iPv~vKl~----------------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~ 276 (422)
.+.. +++|=.=|. ..++++.+..+.+.+.|+|.+.+.-.+ ..
T Consensus 123 ah~~-gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt---------------------~H 180 (287)
T PF01116_consen 123 AHAY-GVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGT---------------------AH 180 (287)
T ss_dssp HHHT-T-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSS---------------------BS
T ss_pred hhhh-CCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCc---------------------cc
Confidence 5543 444433221 113466777777889999998765322 12
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHH-HHHHHHHhCCCEEEEhhHHHhh
Q 014581 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGG-DAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 277 gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~-da~~~l~aGAd~V~vgtall~~ 342 (422)
|.|.+..-..+.++.+++|++.++ ++|+..=||=..++ ++.+++.+|..=|=++|.+...
T Consensus 181 G~y~~~~~p~Ld~~~L~~I~~~~~------~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 241 (287)
T PF01116_consen 181 GMYKGGKKPKLDFDRLKEIREAVP------DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRA 241 (287)
T ss_dssp SSBSSSSSTC--HHHHHHHHHHHH------TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHhcC------CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHH
Confidence 334441111345678888988874 68988888866665 8999999999999999988754
No 426
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=95.07 E-value=0.33 Score=47.92 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE-ccCC------CCCC------Ccc-ccccc
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEV-NFSC------PHGM------PER-KMGAA 198 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iEl-N~sc------P~~~------~~~-~~G~~ 198 (422)
.+.+.+.++.+++.. +.||++=+. .+..+..++++.++++|+|+|.+ |-.- +.+. ..+ ..|+.
T Consensus 153 ~~~~~~iv~~v~~~~-~~Pv~vKl~--~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~ 229 (299)
T cd02940 153 PELVEEICRWVREAV-KIPVIAKLT--PNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGY 229 (299)
T ss_pred HHHHHHHHHHHHHhc-CCCeEEECC--CCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcc
Confidence 455555666666654 689999885 34457788999999999999875 2110 0000 001 11111
Q ss_pred cc-cChhHHHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 199 VG-QDCRLLEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 199 l~-~~~~~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
-+ .......+.+..+++.+ ++||+. ..++.+.....+.+ .+|||+|-+.
T Consensus 230 sG~a~~p~~l~~v~~~~~~~~~~ipIig--~GGI~~~~da~~~l-~aGA~~V~i~ 281 (299)
T cd02940 230 SGPAVKPIALRAVSQIARAPEPGLPISG--IGGIESWEDAAEFL-LLGASVVQVC 281 (299)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEE--ECCCCCHHHHHHHH-HcCCChheEc
Confidence 11 12233456777788877 789887 56677766666655 5999998654
No 427
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.98 E-value=0.7 Score=45.26 Aligned_cols=86 Identities=23% Similarity=0.305 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHh-CCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECC-CCCChHHH
Q 014581 160 YNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTP-NITDITEP 235 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~a-GaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~-~~~~~~~~ 235 (422)
.+.+.+.+.++++.+. |+++|-++-+. |....-..+.-.++++.+.+.+ ++||++=+.. +..+..+.
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~Gst---------GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~ 88 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGST---------GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQEL 88 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcCC---------cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHH
Confidence 4677889999999999 99999887431 2222233444455555555443 5799987654 33457889
Q ss_pred HHHHHHcCCCEEEEecCCc
Q 014581 236 ARVALRSGSEGVSAINTIM 254 (422)
Q Consensus 236 a~~l~~aGadgi~v~n~~~ 254 (422)
++.++++|+|++.+.....
T Consensus 89 a~~a~~~Gad~v~~~~P~y 107 (288)
T cd00954 89 AKHAEELGYDAISAITPFY 107 (288)
T ss_pred HHHHHHcCCCEEEEeCCCC
Confidence 9999999999998876543
No 428
>PLN02389 biotin synthase
Probab=94.97 E-value=1.4 Score=44.97 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCC-CCCCCccccccccccChhHHHHHH
Q 014581 132 PLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSC-PHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 132 ~~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~sc-P~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
..+.+++.++.+|+. +..+.++.+ -.+. +.++++.++|+|.+.+|+-. |.. .+... -..+.+...+.+
T Consensus 151 ~~e~i~eiir~ik~~--~l~i~~s~G-~l~~----E~l~~LkeAGld~~~~~LeTs~~~--y~~i~--~~~s~e~rl~ti 219 (379)
T PLN02389 151 NFNQILEYVKEIRGM--GMEVCCTLG-MLEK----EQAAQLKEAGLTAYNHNLDTSREY--YPNVI--TTRSYDDRLETL 219 (379)
T ss_pred HHHHHHHHHHHHhcC--CcEEEECCC-CCCH----HHHHHHHHcCCCEEEeeecCChHH--hCCcC--CCCCHHHHHHHH
Confidence 366777777877742 444555553 2333 34567778899999998753 211 01100 013455555666
Q ss_pred HHHhhccCccEE----EEECCCCCChHHHHHHHHHc--CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 211 GWINAKATVPVW----AKMTPNITDITEPARVALRS--GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 211 ~~vr~~~~iPv~----vKl~~~~~~~~~~a~~l~~a--Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
+.+++. .+++. +-+.-...+..+++..+.+. ..+.|.+ |.+...+ .+|. ... +++
T Consensus 220 ~~a~~~-Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l-~~l~P~~------GTpL---------~~~--~~~ 280 (379)
T PLN02389 220 EAVREA-GISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPI-NALVAVK------GTPL---------EDQ--KPV 280 (379)
T ss_pred HHHHHc-CCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEec-ccceecC------CCcC---------CCC--CCC
Confidence 666554 45543 33321122345666667666 4555543 2221111 1111 111 111
Q ss_pred ch-hHHHHHHHHHHHhhccCCCCCceEEEecC-CC-CHHHHHHHHHhCCCEEEEhhH-HHhhhhHHHHHHHHHHHHHHHH
Q 014581 285 HP-IALGKVMSIAKMMKSEFNDKDYSLSGIGG-VE-TGGDAAEFILLGANTVQVCTG-VMMHGYGLVKRLCEELKDFMKM 360 (422)
Q Consensus 285 ~p-~al~~v~~i~~~~~~~~~~~~ipIIa~GG-I~-s~~da~~~l~aGAd~V~vgta-ll~~Gp~~i~~i~~~l~~~m~~ 360 (422)
.+ ..++.|.-.|-.+++ ..|-..|| +. ..+....++.+||+.+++|-- +-..|..+-+++ +.+++
T Consensus 281 s~~e~lr~iAi~Rl~lP~------~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~-----~~~~~ 349 (379)
T PLN02389 281 EIWEMVRMIATARIVMPK------AMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQ-----AMFKE 349 (379)
T ss_pred CHHHHHHHHHHHHHHCCC------ccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHH-----HHHHH
Confidence 12 235555544545543 22333344 33 344467888999999999997 666665543332 35677
Q ss_pred cCCCCH
Q 014581 361 HNFSSI 366 (422)
Q Consensus 361 ~G~~si 366 (422)
.||.--
T Consensus 350 lg~~~~ 355 (379)
T PLN02389 350 LGLIPK 355 (379)
T ss_pred cCCCcc
Confidence 788733
No 429
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.95 E-value=0.81 Score=46.44 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=86.3
Q ss_pred CCeEEEEeCCC------CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--Ccc
Q 014581 149 DKILIASIMEE------YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVP 220 (422)
Q Consensus 149 ~~pvi~si~~~------~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iP 220 (422)
..|+..++..+ .+++++.+.++++.+.|++.+.+..+-+ .+++.-.+.++++|+.+ +++
T Consensus 125 ~v~~y~s~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~~~~-------------~~~~~di~~i~~vR~~~G~~~~ 191 (368)
T cd03329 125 KIPAYASTMVGDDLEGLESPEAYADFAEECKALGYRAIKLHPWGP-------------GVVRRDLKACLAVREAVGPDMR 191 (368)
T ss_pred ceeEEEecCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEecCCc-------------hhHHHHHHHHHHHHHHhCCCCe
Confidence 34666665322 2678888888888888999999853211 11234456777888765 678
Q ss_pred EEEEECCCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHH
Q 014581 221 VWAKMTPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKM 298 (422)
Q Consensus 221 v~vKl~~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~ 298 (422)
|.+=.+..++ +..++++.+.+.++..+. +|.+ +..++..+++++.
T Consensus 192 l~vDan~~~~~~~A~~~~~~l~~~~l~~iE----------------eP~~-----------------~~d~~~~~~l~~~ 238 (368)
T cd03329 192 LMHDGAHWYSRADALRLGRALEELGFFWYE----------------DPLR-----------------EASISSYRWLAEK 238 (368)
T ss_pred EEEECCCCcCHHHHHHHHHHhhhcCCCeEe----------------CCCC-----------------chhHHHHHHHHhc
Confidence 8876655443 245666667666654441 2221 1122334456665
Q ss_pred hhccCCCCCceEEEecCCCC-HHHHHHHHHhC-CCEEEEh
Q 014581 299 MKSEFNDKDYSLSGIGGVET-GGDAAEFILLG-ANTVQVC 336 (422)
Q Consensus 299 ~~~~~~~~~ipIIa~GGI~s-~~da~~~l~aG-Ad~V~vg 336 (422)
. ++||.+.--+.+ .+++.+++..| +|.||+-
T Consensus 239 ~-------~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d 271 (368)
T cd03329 239 L-------DIPILGTEHSRGALESRADWVLAGATDFLRAD 271 (368)
T ss_pred C-------CCCEEccCcccCcHHHHHHHHHhCCCCEEecC
Confidence 4 799988888888 99999999876 6788764
No 430
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=94.94 E-value=0.9 Score=45.60 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCC----CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccc-ccChhHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEE----YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAV-GQDCRLLEE 208 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~----~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l-~~~~~~v~~ 208 (422)
+...+.++.+++.. +.||.+-+..+ .+.++..++++.++++|+|+|.++-.... ..++.+.. ...+..-.+
T Consensus 119 ~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~---~~g~~~~~~~~~~~~~~~ 194 (333)
T PRK11815 119 ELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAW---LKGLSPKENREIPPLDYD 194 (333)
T ss_pred HHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchh---hcCCCccccccCCCcCHH
Confidence 44444555666544 67888744211 23456778899999999999998832110 00110000 000111234
Q ss_pred HHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 209 VCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 209 iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.+..+++.+ ++||+. +.++.+... ++.+.+ |+|+|.+.
T Consensus 195 ~i~~v~~~~~~iPVI~--nGgI~s~ed-a~~~l~-~aDgVmIG 233 (333)
T PRK11815 195 RVYRLKRDFPHLTIEI--NGGIKTLEE-AKEHLQ-HVDGVMIG 233 (333)
T ss_pred HHHHHHHhCCCCeEEE--ECCcCCHHH-HHHHHh-cCCEEEEc
Confidence 555666664 899886 466666554 444444 69988644
No 431
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.86 E-value=0.68 Score=46.25 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=76.4
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN 228 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~ 228 (422)
..|+++|=|.. ..=.++|+.+.+.|.-.+-.- .+++.....+ |+.-...++|-++..
T Consensus 37 ~~P~~inAM~t---~iN~~LA~~a~~~G~~~~~~k-----------------~~~e~~~~~~---r~~~~~~l~v~~~vg 93 (326)
T PRK05458 37 KLPVVPANMQT---IIDEKIAEWLAENGYFYIMHR-----------------FDPEARIPFI---KDMHEQGLIASISVG 93 (326)
T ss_pred cCcEEEecccc---hhHHHHHHHHHHcCCEEEEec-----------------CCHHHHHHHH---HhccccccEEEEEec
Confidence 57999988732 222456666666543332211 1344444444 333233445555544
Q ss_pred CC-ChHHHHHHHHHcCC--CEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCC
Q 014581 229 IT-DITEPARVALRSGS--EGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFND 305 (422)
Q Consensus 229 ~~-~~~~~a~~l~~aGa--dgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~ 305 (422)
.. +..+-+..+.++|+ |.|.+--+- |++ ....+.|+++++.++
T Consensus 94 ~~~~~~~~~~~Lv~ag~~~d~i~iD~a~------------------------gh~-----~~~~e~I~~ir~~~p----- 139 (326)
T PRK05458 94 VKDDEYDFVDQLAAEGLTPEYITIDIAH------------------------GHS-----DSVINMIQHIKKHLP----- 139 (326)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCC------------------------Cch-----HHHHHHHHHHHhhCC-----
Confidence 32 34567888899965 987543211 111 234567788887663
Q ss_pred CCceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 306 KDYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 306 ~~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
++||| .|.|.|.+++..++.+|||++.+|
T Consensus 140 -~~~vi-~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 140 -ETFVI-AGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred -CCeEE-EEecCCHHHHHHHHHcCcCEEEEC
Confidence 45544 456889999999999999999877
No 432
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=94.84 E-value=0.41 Score=50.06 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=60.5
Q ss_pred HHHHHhhCCCCeEEEEeCC---CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 140 FKQLKALYPDKILIASIME---EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~---~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
++++... .++|++.+|.. |.+++++.+++..+...|+|.|-=+=..-+. .+ ..+..+...+.+.++...+.
T Consensus 151 iR~~lgv-~~RPL~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q----~f-~p~~~Rv~~~~~a~~~a~~e 224 (468)
T PRK04208 151 ERERLDK-YGRPLLGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQ----PF-NRWRDRFLFVMEAIDKAEAE 224 (468)
T ss_pred HHHHhCC-CCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCC----CC-ccHHHHHHHHHHHHHHHHHh
Confidence 3444433 48999998753 5689999999998888899998533110000 00 01122333333444444444
Q ss_pred cCcc--EEEEECCC-CCChHHHHHHHHHcCCCEEEE
Q 014581 217 ATVP--VWAKMTPN-ITDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 217 ~~iP--v~vKl~~~-~~~~~~~a~~l~~aGadgi~v 249 (422)
+... ..+-++.+ ..++.+-++.+.+.|+.++.+
T Consensus 225 TG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv 260 (468)
T PRK04208 225 TGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVMI 260 (468)
T ss_pred hCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 5332 34555544 444566678888999987743
No 433
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.84 E-value=0.55 Score=46.23 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHh--CCCEEEE-ccC-----------CCCCCCccccccc
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEET--GIDAIEV-NFS-----------CPHGMPERKMGAA 198 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~a--GaD~iEl-N~s-----------cP~~~~~~~~G~~ 198 (422)
.+.+.+.++.+++.. +.||++=+....+.+++.++++.+.++ |+|+|.+ |-. .|.......+|+-
T Consensus 142 ~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~ 220 (294)
T cd04741 142 FDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGL 220 (294)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCc
Confidence 455556666777654 789999997556677788899988888 8998885 321 1100001112211
Q ss_pred ccc--ChhHHHHHHHHHhhcc--CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 199 VGQ--DCRLLEEVCGWINAKA--TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 199 l~~--~~~~v~~iv~~vr~~~--~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
-+. ++. ..+.+..+++.+ ++||+. +.++.+.....+.+. +|||+|-+.
T Consensus 221 SG~~i~~~-al~~v~~~~~~~~~~ipIig--~GGI~s~~da~e~l~-aGA~~Vqv~ 272 (294)
T cd04741 221 AGAYLHPL-ALGNVRTFRRLLPSEIQIIG--VGGVLDGRGAFRMRL-AGASAVQVG 272 (294)
T ss_pred CchhhHHH-HHHHHHHHHHhcCCCCCEEE--eCCCCCHHHHHHHHH-cCCCceeEc
Confidence 110 222 224455566666 489876 466666666666654 999998655
No 434
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.77 E-value=0.33 Score=47.49 Aligned_cols=85 Identities=28% Similarity=0.286 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECCC-CCChHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPN-ITDITEPA 236 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~-~~~~~~~a 236 (422)
.+.+.+.+.++.+.+.|+|+|-++-+. |....-..+.-.++++.+.+.. ++||++=+... ..+..+++
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~Gst---------GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a 89 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGST---------GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELA 89 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTT---------TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC---------cccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHH
Confidence 466788899999989999999987431 2222234445555666655543 68999988763 33578899
Q ss_pred HHHHHcCCCEEEEecCC
Q 014581 237 RVALRSGSEGVSAINTI 253 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~~ 253 (422)
+.+++.|+|++.+....
T Consensus 90 ~~a~~~Gad~v~v~~P~ 106 (289)
T PF00701_consen 90 RHAQDAGADAVLVIPPY 106 (289)
T ss_dssp HHHHHTT-SEEEEEEST
T ss_pred HHHhhcCceEEEEeccc
Confidence 99999999999888654
No 435
>PRK07094 biotin synthase; Provisional
Probab=94.74 E-value=0.98 Score=44.85 Aligned_cols=173 Identities=13% Similarity=0.032 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+.+.++.+++. ++..+-++++ ..+. +.++.+.++|+|.+.+++-..+......++. ..+.+...+.++.
T Consensus 102 ~~~l~~l~~~i~~~-~~l~i~~~~g-~~~~----e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~--~~s~~~~~~~i~~ 173 (323)
T PRK07094 102 DEKIADIIKEIKKE-LDVAITLSLG-ERSY----EEYKAWKEAGADRYLLRHETADKELYAKLHP--GMSFENRIACLKD 173 (323)
T ss_pred HHHHHHHHHHHHcc-CCceEEEecC-CCCH----HHHHHHHHcCCCEEEeccccCCHHHHHHhCC--CCCHHHHHHHHHH
Confidence 45556666777764 3566666664 2333 3456677899999998874332111111111 1344555566666
Q ss_pred HhhccCccE----EEEECC-CCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh
Q 014581 213 INAKATVPV----WAKMTP-NITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI 287 (422)
Q Consensus 213 vr~~~~iPv----~vKl~~-~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~ 287 (422)
+++. .+++ ++=++. +..+..+.++.+.+.+++.+.+..-.+. + .+|.. ....+. ...
T Consensus 174 l~~~-Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~-p------gTpl~---------~~~~~~-~~~ 235 (323)
T PRK07094 174 LKEL-GYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPH-P------DTPLK---------DEKGGS-LEL 235 (323)
T ss_pred HHHc-CCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccC-C------CCCcc---------cCCCCC-HHH
Confidence 6664 4443 222211 2224667788888999987765432211 1 11211 111111 123
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEE
Q 014581 288 ALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQV 335 (422)
Q Consensus 288 al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~v 335 (422)
.++.+...|-.+++ ..++..+.=+-..++....+|.+||+.++.
T Consensus 236 ~~~~~a~~R~~lp~----~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~ 279 (323)
T PRK07094 236 TLKVLALLRLLLPD----ANIPATTALGTLNPDGREKGLKAGANVVMP 279 (323)
T ss_pred HHHHHHHHHHhCcC----CCCcccCCccccCchhHHHHHHcCCceecC
Confidence 35666666666642 245554221223345556788999998884
No 436
>PRK02227 hypothetical protein; Provisional
Probab=94.73 E-value=1.6 Score=41.44 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccc-cChhHHHHHHHHHhhccCccEEEEECCCCC
Q 014581 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVG-QDCRLLEEVCGWINAKATVPVWAKMTPNIT 230 (422)
Q Consensus 152 vi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~-~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~ 230 (422)
+.+|+. +.++ |+.+..+|+|.|++- -|.. ++++ ..|..+++|++.+.. .+|+...+.-.-.
T Consensus 3 lLvSvr---~~eE----A~~Al~~GaDiIDvK--~P~~-------GaLGA~~p~vir~Iv~~~~~--~~pvSAtiGD~p~ 64 (238)
T PRK02227 3 LLVSVR---NLEE----ALEALAGGADIIDVK--NPKE-------GSLGANFPWVIREIVAAVPG--RKPVSATIGDVPY 64 (238)
T ss_pred eeeccC---CHHH----HHHHHhcCCCEEEcc--CCCC-------CCCCCCCHHHHHHHHHHhCC--CCCceeeccCCCC
Q ss_pred ChHHHHHHHHH---cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCC
Q 014581 231 DITEPARVALR---SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKD 307 (422)
Q Consensus 231 ~~~~~a~~l~~---aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ 307 (422)
+...++.++.. .|+|+| .-|+.|..-...+++.+..+.+.++...+ +
T Consensus 65 ~p~~~~~aa~~~a~~GvDyV----------------------------KvGl~~~~~~~~~~~~~~~v~~a~~~~~~--~ 114 (238)
T PRK02227 65 KPGTISLAALGAAATGADYV----------------------------KVGLYGGKTAEEAVEVMKAVVRAVKDLDP--G 114 (238)
T ss_pred CchHHHHHHHHHHhhCCCEE----------------------------EEcCCCCCcHHHHHHHHHHHHHhhhhcCC--C
Q ss_pred ceEEEecCCC-------CHHHHHHHHH-hCCCEEEEhhH
Q 014581 308 YSLSGIGGVE-------TGGDAAEFIL-LGANTVQVCTG 338 (422)
Q Consensus 308 ipIIa~GGI~-------s~~da~~~l~-aGAd~V~vgta 338 (422)
..+++++=-. ++.++.+... +|++++|+=|+
T Consensus 115 ~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa 153 (238)
T PRK02227 115 KIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTA 153 (238)
T ss_pred CeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecc
No 437
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.72 E-value=0.14 Score=50.32 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=57.4
Q ss_pred hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEE
Q 014581 232 ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLS 311 (422)
Q Consensus 232 ~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipII 311 (422)
+.++++.+.+.|+++|.+.++++....+.. ..-.+.++.+++...+ ++||+
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~------------------------~Er~~l~~~~~~~~~g-----~~pvi 73 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSLTL------------------------EERKQAIENAIDQIAG-----RIPFA 73 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCH------------------------HHHHHHHHHHHHHhCC-----CCcEE
Confidence 567888889999999998887754322211 1113455556665543 78998
Q ss_pred EecCCCCHHHHHHHH----HhCCCEEEEhhHHHhh
Q 014581 312 GIGGVETGGDAAEFI----LLGANTVQVCTGVMMH 342 (422)
Q Consensus 312 a~GGI~s~~da~~~l----~aGAd~V~vgtall~~ 342 (422)
+.-|-.+.+|+++.. .+|||+|++....+..
T Consensus 74 ~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~ 108 (294)
T TIGR02313 74 PGTGALNHDETLELTKFAEEAGADAAMVIVPYYNK 108 (294)
T ss_pred EECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCC
Confidence 777777787776654 4699999999988765
No 438
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=94.71 E-value=0.56 Score=48.01 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=62.1
Q ss_pred HHHHHhhCCCCeEEEEeCC---CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 140 FKQLKALYPDKILIASIME---EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~---~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
++++-.. .++|++.+|.. |.+++++.+++..+...|+|.|-=+=...+. .+ .-++.+...+.+.++...+.
T Consensus 115 ~R~~lgv-~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q----~~-~p~~eRv~a~~~a~~~a~~e 188 (391)
T cd08209 115 IRQRLGV-HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDN----PL-APALERIRACRPVLQEVYEQ 188 (391)
T ss_pred HHHHhCC-CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCC----CC-CCHHHHHHHHHHHHHHHHHh
Confidence 4444443 48999999853 5789999999998888899988532111110 00 01222333344444444444
Q ss_pred cCcc--EEEEECCCCCChHHHHHHHHHcCCCEEEE
Q 014581 217 ATVP--VWAKMTPNITDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 217 ~~iP--v~vKl~~~~~~~~~~a~~l~~aGadgi~v 249 (422)
+... ..+-++....++.+-++.+.+.|++++.+
T Consensus 189 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv 223 (391)
T cd08209 189 TGRRTLYAVNLTGPVFTLKEKARRLVEAGANALLF 223 (391)
T ss_pred hCCcceEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 5332 34566655555677788899999987743
No 439
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=94.68 E-value=0.35 Score=47.80 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=47.3
Q ss_pred Cce-EEEecCCCCHHHHHHHH----HhCC--CEEEEhhHHHhhhhHHH-HHHHHHHHHHHHHcCCCCHHHhh
Q 014581 307 DYS-LSGIGGVETGGDAAEFI----LLGA--NTVQVCTGVMMHGYGLV-KRLCEELKDFMKMHNFSSIEDFR 370 (422)
Q Consensus 307 ~ip-IIa~GGI~s~~da~~~l----~aGA--d~V~vgtall~~Gp~~i-~~i~~~l~~~m~~~G~~si~d~~ 370 (422)
++| |+.++|+. .+...+.+ .+|| ++|.+||++..++...+ ..=.+..++||...|.++|+++-
T Consensus 241 ~~P~i~LSaGV~-~~~F~~~l~~A~~aGa~fsGvL~GRAtW~~~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln 311 (325)
T TIGR01232 241 HLPYIYLSAGVS-AELFQETLKFAHEAGAKFNGVLCGRATWSGAVQVYIEQGEDAAREWLRTTGFKNIDDLN 311 (325)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHHcCCCcceEEeehhhhHhhhhhhhcCCHHHHHHHHHHHhHHHHHHHH
Confidence 666 78888886 55544443 4699 79999999998865543 33356688999999999998874
No 440
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=94.66 E-value=0.24 Score=48.22 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 137 LKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 137 l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
.+.++++|+..|+.++.+++. +.++..+ +.++|+|+|-+.-. .++.++++++.+++.
T Consensus 171 ~~av~~~R~~~~~~~IgVev~---t~eea~~----A~~~gaD~I~ld~~----------------~p~~l~~~~~~~~~~ 227 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD---SLEEALA----AAEAGADILQLDKF----------------SPEELAELVPKLRSL 227 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC---CHHHHHH----HHHcCCCEEEECCC----------------CHHHHHHHHHHHhcc
Confidence 445677776667778888884 4554333 33579999988611 123456677766654
Q ss_pred -cCccEEEEECCCCCChHHHHHHHHHcCCCEEEEec
Q 014581 217 -ATVPVWAKMTPNITDITEPARVALRSGSEGVSAIN 251 (422)
Q Consensus 217 -~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n 251 (422)
.++|+.+= .+++ .+-+..+.+.|+|+|+++.
T Consensus 228 ~~~i~i~As--GGI~--~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 228 APPVLLAAA--GGIN--IENAAAYAAAGADILVTSA 259 (272)
T ss_pred CCCceEEEE--CCCC--HHHHHHHHHcCCcEEEECh
Confidence 26787763 3442 3455667789999995543
No 441
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.66 E-value=0.71 Score=45.74 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=48.0
Q ss_pred Cce-EEEecCCCCHHHHHHHH----HhCCC--EEEEhhHHHhhhhHHH-HHHHHHHHHHHHHcCCCCHHHhhc
Q 014581 307 DYS-LSGIGGVETGGDAAEFI----LLGAN--TVQVCTGVMMHGYGLV-KRLCEELKDFMKMHNFSSIEDFRG 371 (422)
Q Consensus 307 ~ip-IIa~GGI~s~~da~~~l----~aGAd--~V~vgtall~~Gp~~i-~~i~~~l~~~m~~~G~~si~d~~G 371 (422)
++| |+.++|+. .+...+.+ .+||+ +|.+||++..++...+ ..=.+..++||...|.++|+++--
T Consensus 242 ~~P~i~LSaGV~-~~~F~~~l~~A~~aGa~fnGvL~GRAtW~~~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~ 313 (329)
T PRK04161 242 HLPYIYLSAGVS-AKLFQETLVFAAEAGAQFNGVLCGRATWAGSVPVYITEGEEAARKWLCTEGFQNIDELNR 313 (329)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHhcCCCcccEEeehhhhhhhhhhhhcCCHHHHHHHHHHHhHHHHHHHHH
Confidence 676 78888886 44444443 38998 9999999998865543 333577889999999999988753
No 442
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.63 E-value=2.6 Score=42.31 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVA 239 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l 239 (422)
++.++..++++.+.++|+|.||+..+.--....-.+|.....+.+.++++.+.++ +..+.+=+.|...+ .+.++.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~---~~~~~~ll~pg~~~-~~dl~~a 96 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK---RAKVAVLLLPGIGT-VHDLKAA 96 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC---CCEEEEEeccCccC-HHHHHHH
Confidence 4678889999999999999999963211000000112222234455555555543 23344444454333 3567888
Q ss_pred HHcCCCEEEEec
Q 014581 240 LRSGSEGVSAIN 251 (422)
Q Consensus 240 ~~aGadgi~v~n 251 (422)
.+.|++.|-+.-
T Consensus 97 ~~~gvd~iri~~ 108 (333)
T TIGR03217 97 YDAGARTVRVAT 108 (333)
T ss_pred HHCCCCEEEEEe
Confidence 999999987654
No 443
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=94.61 E-value=0.28 Score=47.15 Aligned_cols=176 Identities=19% Similarity=0.140 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcc-cccc--ccccChhHHHHHHH
Q 014581 135 TMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPER-KMGA--AVGQDCRLLEEVCG 211 (422)
Q Consensus 135 ~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~-~~G~--~l~~~~~~v~~iv~ 211 (422)
++++.+++-.+. +.|++..-. +.- -.||..++.|+|.|-+--|-...+.-+ .+.+ .+++--+.+.++.+
T Consensus 2 eil~~l~~~i~~--~~pIig~ga-GtG-----lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~ 73 (268)
T PF09370_consen 2 EILDRLRAQIKA--GKPIIGAGA-GTG-----LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAR 73 (268)
T ss_dssp HHHHHHHHHHHT--T--EEEEEE-SSH-----HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHH
T ss_pred hHHHHHHHHHhC--CCceEEEee-ccc-----hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHH
Confidence 345555543332 567665443 221 145667778999987631100000000 0000 11122245555555
Q ss_pred HHhhcc-CccEEEEECCCC--CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhH
Q 014581 212 WINAKA-TVPVWAKMTPNI--TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIA 288 (422)
Q Consensus 212 ~vr~~~-~iPv~vKl~~~~--~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~a 288 (422)
+|--.+ +.||+.-+...- .+...+.+.+.+.|..||.=+-|.. -||-.- +... ..-|++ ..
T Consensus 74 eiLp~v~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvg---liDG~f-R~~L------Ee~Gmg------y~ 137 (268)
T PF09370_consen 74 EILPVVKDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVG---LIDGQF-RQNL------EETGMG------YD 137 (268)
T ss_dssp HHGGG-SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GG---G--HHH-HHHH------HHTT--------HH
T ss_pred hhhhhccCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcce---eeccHH-HHHH------HhcCCC------HH
Confidence 554444 689999887542 3578899999999999996554432 133110 0000 011221 11
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 289 LGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 289 l~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
+ -|..++.+- ...+...+=+++.+|+.++..+|||.+-+.=++-..
T Consensus 138 ~-EVemi~~A~-------~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~g 183 (268)
T PF09370_consen 138 R-EVEMIRKAH-------EKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTG 183 (268)
T ss_dssp H-HHHHHHHHH-------HTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS---
T ss_pred H-HHHHHHHHH-------HCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCC
Confidence 2 233344432 344666677889999999999999988887655543
No 444
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=94.60 E-value=5 Score=39.38 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 134 e~~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
+.+...++.+.+++. +.||.+.+--+.+.+. ++++.++|+.-+-++-|.- .++.+.+..+++++.
T Consensus 61 ~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~----i~~ai~~GftSVM~DgS~l----------~~eeNi~~T~~vve~ 126 (286)
T PRK08610 61 YTVVKMVEGLMHDLNITIPVAIHLDHGSSFEK----CKEAIDAGFTSVMIDASHS----------PFEENVATTKKVVEY 126 (286)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCCC----------CHHHHHHHHHHHHHH
Confidence 334444454444442 3699999864444433 2345567998888886521 134555666677765
Q ss_pred HhhccCccEEEEEC-------------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCC
Q 014581 213 INAKATVPVWAKMT-------------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGY 279 (422)
Q Consensus 213 vr~~~~iPv~vKl~-------------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~ 279 (422)
.+.. +++|=.=|. ..++++.+..+.+.+.|+|.+-+.-.+. .|-|
T Consensus 127 Ah~~-gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~---------------------HG~Y 184 (286)
T PRK08610 127 AHEK-GVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSV---------------------HGPY 184 (286)
T ss_pred HHHc-CCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccc---------------------cccc
Confidence 5432 343322111 1146777777777889999987654221 1223
Q ss_pred CCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCH-HHHHHHHHhCCCEEEEhhHHHhh
Q 014581 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETG-GDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 280 sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~-~da~~~l~aGAd~V~vgtall~~ 342 (422)
.|++ .+.++.++++++.+ ++|++.=||=..+ +++.+++..|..=|=++|.+...
T Consensus 185 ~~~p--~Ld~~~L~~I~~~~-------~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a 239 (286)
T PRK08610 185 KGEP--KLGFKEMEEIGLST-------GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIA 239 (286)
T ss_pred CCCC--CCCHHHHHHHHHHH-------CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHH
Confidence 3321 23456777888876 7888888876666 77888999999999999988654
No 445
>PRK15108 biotin synthase; Provisional
Probab=94.58 E-value=2.8 Score=42.25 Aligned_cols=192 Identities=11% Similarity=0.093 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccc--ccChhHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAV--GQDCRLLEEVC 210 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l--~~~~~~v~~iv 210 (422)
.+.+.+.++.+|+. +..+++|++ ..+. +.++++.++|+|.+-+|+-+ . +.++..+ ..+.+..-+.+
T Consensus 110 ~e~i~~~i~~ik~~--~i~v~~s~G-~ls~----e~l~~LkeAGld~~n~~leT-~----p~~f~~I~~~~~~~~rl~~i 177 (345)
T PRK15108 110 MPYLEQMVQGVKAM--GLETCMTLG-TLSE----SQAQRLANAGLDYYNHNLDT-S----PEFYGNIITTRTYQERLDTL 177 (345)
T ss_pred HHHHHHHHHHHHhC--CCEEEEeCC-cCCH----HHHHHHHHcCCCEEeecccc-C----hHhcCCCCCCCCHHHHHHHH
Confidence 57777778888753 566778875 3443 34567788999999998744 1 1112222 12344444455
Q ss_pred HHHhhccCccE----EEEECCCCCChHHHHHHHHHc--CCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 211 GWINAKATVPV----WAKMTPNITDITEPARVALRS--GSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 211 ~~vr~~~~iPv----~vKl~~~~~~~~~~a~~l~~a--Gadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
+.+++. .+++ ++-+.....+..+++..+.+. ..+.|. .|.+... ..+|. .+. +.+
T Consensus 178 ~~a~~~-G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip-~~~~~P~------~gTpl---------~~~--~~~ 238 (345)
T PRK15108 178 EKVRDA-GIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVP-INMLVKV------KGTPL---------ADN--DDV 238 (345)
T ss_pred HHHHHc-CCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEE-eCCccCC------CCCCC---------CCC--CCC
Confidence 554443 3443 233332333566677777777 445432 3333110 01111 111 001
Q ss_pred ch-hHHHHHHHHHHHhhccCCCCCceEEEecCC--CCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHc
Q 014581 285 HP-IALGKVMSIAKMMKSEFNDKDYSLSGIGGV--ETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMH 361 (422)
Q Consensus 285 ~p-~al~~v~~i~~~~~~~~~~~~ipIIa~GGI--~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~ 361 (422)
.+ ..++.|.-.|=.++ +.-|-.+||- ...+....+|.+||+.++++--++.. +. .=.++..+..++.
T Consensus 239 ~~~e~lr~iAi~Rl~lp------~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt-~g---~~~~~~~~~i~~~ 308 (345)
T PRK15108 239 DAFDFIRTIAVARIMMP------TSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTT-PN---PEEDKDLQLFRKL 308 (345)
T ss_pred CHHHHHHHHHHHHHHCC------CceeeecccHhHhChhhHHHHHHcCCcEEEECCccccC-CC---CCHHHHHHHHHHc
Confidence 11 23444444444443 4334444443 33444677788999999999754433 11 1123344556677
Q ss_pred CCCC
Q 014581 362 NFSS 365 (422)
Q Consensus 362 G~~s 365 (422)
||.-
T Consensus 309 g~~~ 312 (345)
T PRK15108 309 GLNP 312 (345)
T ss_pred CCCc
Confidence 8874
No 446
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=94.57 E-value=1.7 Score=40.66 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=78.9
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc-C
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-T 218 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~-~ 218 (422)
++.+++. ..++++-+.-.--+......++.+.++|+|++.+|.... .+.++..++..++.- .
T Consensus 42 v~~l~~~--~~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g---------------~~~l~~~~~~~~~~~~~ 104 (213)
T TIGR01740 42 IDELAKL--NKLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG---------------SESVEAAKEAASEGGRG 104 (213)
T ss_pred HHHHHHc--CCCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC---------------HHHHHHHHHHhhcCCCe
Confidence 4555553 347777774221223334455656678999999985321 234566666655432 2
Q ss_pred ccEEEEECCCCC---------ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHH
Q 014581 219 VPVWAKMTPNIT---------DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289 (422)
Q Consensus 219 iPv~vKl~~~~~---------~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al 289 (422)
+=+.+.++.... .+.++++.+.+.|.+|++.. |
T Consensus 105 v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~-----------------------------------~--- 146 (213)
T TIGR01740 105 LLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCS-----------------------------------A--- 146 (213)
T ss_pred EEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeC-----------------------------------H---
Confidence 234455553211 12344445555666665411 1
Q ss_pred HHHHHHHHHhhccCCCCCceEEEecCCCCH-HHH---------HHHHHhCCCEEEEhhHHHhh
Q 014581 290 GKVMSIAKMMKSEFNDKDYSLSGIGGVETG-GDA---------AEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 290 ~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~-~da---------~~~l~aGAd~V~vgtall~~ 342 (422)
+.+..+++..+ + .++.++||.-. .+. .++..+|||.+-+||+++..
T Consensus 147 ~~~~~ir~~~~------~-~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~ 202 (213)
T TIGR01740 147 EEAKEIRKFTG------D-FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAA 202 (213)
T ss_pred HHHHHHHHhcC------C-ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCC
Confidence 12344555542 3 36889999733 122 67778999999999998864
No 447
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=94.56 E-value=1.9 Score=43.27 Aligned_cols=150 Identities=14% Similarity=0.096 Sum_probs=86.1
Q ss_pred CCeEEEEeCCCCCHHH---HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhh-ccCccEEEE
Q 014581 149 DKILIASIMEEYNKAA---WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINA-KATVPVWAK 224 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~---~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~-~~~iPv~vK 224 (422)
+.|++++=|.+-+... -.++++.+.++|...- +++ . +.. ..+++...+. +.+|+ ..++|+++-
T Consensus 53 ~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~---~Gs-~-------~~~-~~~~~~~~~~-~~vr~~~~~~p~i~n 119 (333)
T TIGR02151 53 KAPFYINAMTGGSEEAGKINRNLARAARELGIPMG---VGS-Q-------RAA-LKDPETADTF-EVVREEAPNGPLIAN 119 (333)
T ss_pred cCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeE---EcC-c-------hhh-ccChhhHhHH-HHHHHhCCCCcEEee
Confidence 5688876664444222 2456666667664432 111 0 111 2356655555 66777 569999987
Q ss_pred ECCCCC---ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhc
Q 014581 225 MTPNIT---DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKS 301 (422)
Q Consensus 225 l~~~~~---~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~ 301 (422)
+...-. +..++.++....++|++.++-...+ +-.. +.|.. . ....++.++.+++.+
T Consensus 120 l~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q------~~~~----------p~g~~--~-f~~~le~i~~i~~~~-- 178 (333)
T TIGR02151 120 IGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQ------ELVQ----------PEGDR--N-FKGWLEKIAEICSQL-- 178 (333)
T ss_pred cCchhhccccHHHHHHHHHHhcCCCEEEcCcccc------cccC----------CCCCc--C-HHHHHHHHHHHHHhc--
Confidence 753211 1344666666678888876421111 0001 11110 0 112346677777765
Q ss_pred cCCCCCceEEE--ecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 302 EFNDKDYSLSG--IGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 302 ~~~~~~ipIIa--~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
++||+. +|.-.+.+++..+..+|+|+|-++.
T Consensus 179 -----~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 179 -----SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred -----CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 788886 4555788999888899999999975
No 448
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=94.54 E-value=1.3 Score=44.39 Aligned_cols=176 Identities=15% Similarity=0.119 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccc--ccChhHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAV--GQDCRLLEEVC 210 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l--~~~~~~v~~iv 210 (422)
.+++.+.++.+++.. +..+.++++ ..+.+ .++++.++|+|.+..|+-. . +.+-..+ ....+.-.+.+
T Consensus 117 ~~~i~~~v~~Vk~~~-~le~c~slG-~l~~e----q~~~L~~aGvd~ynhNLeT-s----~~~y~~I~tt~t~edR~~tl 185 (335)
T COG0502 117 MEEVVEAIKAVKEEL-GLEVCASLG-MLTEE----QAEKLADAGVDRYNHNLET-S----PEFYENIITTRTYEDRLNTL 185 (335)
T ss_pred HHHHHHHHHHHHHhc-CcHHhhccC-CCCHH----HHHHHHHcChhheeccccc-C----HHHHcccCCCCCHHHHHHHH
Confidence 677788888888665 678889996 44444 4577788999999999743 1 1100000 12223333455
Q ss_pred HHHhhcc---CccEEEEECCCCCChHHHHHHHHHcC-CCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 211 GWINAKA---TVPVWAKMTPNITDITEPARVALRSG-SEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 211 ~~vr~~~---~iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
+.+|+.- ..=.++-+.-...|-.+++..+.+.. +|.|- +|.+...+ .+|.- .. +.+.|
T Consensus 186 ~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVP-In~l~P~~------GTPle---------~~--~~~~~ 247 (335)
T COG0502 186 ENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVP-INFLNPIP------GTPLE---------NA--KPLDP 247 (335)
T ss_pred HHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeee-eeeecCCC------CCccc---------cC--CCCCH
Confidence 5566542 12234555444455667788888888 77764 33332111 12211 00 11112
Q ss_pred -hHHHHHHHHHHHhhccCCCCCceEEEecCCC--CHHHHHHHHHhCCCEEEEhh-HHHhhh
Q 014581 287 -IALGKVMSIAKMMKSEFNDKDYSLSGIGGVE--TGGDAAEFILLGANTVQVCT-GVMMHG 343 (422)
Q Consensus 287 -~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~--s~~da~~~l~aGAd~V~vgt-all~~G 343 (422)
..+++|.-.|=.++ +.-|..+||.. .++-...++++||+.+.+|- -+...|
T Consensus 248 ~e~lk~IA~~Ri~~P------~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~ 302 (335)
T COG0502 248 FEFLKTIAVARIIMP------KSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPG 302 (335)
T ss_pred HHHHHHHHHHHHHCC------cceeEccCCcccccHHHHHHHHHhccceeeecceEeecCC
Confidence 23455555555554 56677777754 44555667889999999998 444444
No 449
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=94.52 E-value=0.51 Score=44.23 Aligned_cols=101 Identities=11% Similarity=0.146 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHhhCCCCeEEEEeCCC-CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHH
Q 014581 132 PLETMLKEFKQLKALYPDKILIASIMEE-YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 132 ~~e~~l~~i~~~k~~~~~~pvi~si~~~-~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
..+++.++|+++++...+.|+-+-+-.+ .+.++...+++.+.++|+|+|-..-+-+.. | -.++.++.+.
T Consensus 100 ~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~------g----at~~dv~~m~ 169 (211)
T TIGR00126 100 NEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAG------G----ATVEDVRLMR 169 (211)
T ss_pred cHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC------C----CCHHHHHHHH
Confidence 3677778888888766567766644222 356777888888899999999987432211 1 2334444444
Q ss_pred HHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEE
Q 014581 211 GWINAKATVPVWAKMTPNITDITEPARVALRSGSEGV 247 (422)
Q Consensus 211 ~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi 247 (422)
+.+ .-++-||.+..+.+ .+-+..+.++|++.|
T Consensus 170 ~~v----~~~v~IKaaGGirt-~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 170 NTV----GDTIGVKASGGVRT-AEDAIAMIEAGASRI 201 (211)
T ss_pred HHh----ccCCeEEEeCCCCC-HHHHHHHHHHhhHHh
Confidence 444 33788999988775 455677778898766
No 450
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.52 E-value=5.3 Score=39.98 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHh
Q 014581 135 TMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWIN 214 (422)
Q Consensus 135 ~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr 214 (422)
+|..++.+..++. +.+++.+++ +.+. ++.+.+.|++++.|-- .+ .++..+++++-+
T Consensus 77 e~~~~L~~~~~~~-Gi~~~stpf---d~~s----vd~l~~~~v~~~KI~S--~~-----------~~n~~LL~~va~--- 132 (327)
T TIGR03586 77 EWHKELFERAKEL-GLTIFSSPF---DETA----VDFLESLDVPAYKIAS--FE-----------ITDLPLIRYVAK--- 132 (327)
T ss_pred HHHHHHHHHHHHh-CCcEEEccC---CHHH----HHHHHHcCCCEEEECC--cc-----------ccCHHHHHHHHh---
Confidence 3444454445444 788888886 3333 3455667899988652 22 134455555443
Q ss_pred hccCccEEEEECCC-CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHH
Q 014581 215 AKATVPVWAKMTPN-ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVM 293 (422)
Q Consensus 215 ~~~~iPv~vKl~~~-~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~ 293 (422)
+++||++|.... +.++...++.+.+.|..-|++.-.+..- |.+ ....-|+.+.
T Consensus 133 --~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~Y---------P~~---------------~~~~nL~~i~ 186 (327)
T TIGR03586 133 --TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSY---------PAP---------------LEDANLRTIP 186 (327)
T ss_pred --cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCC---------CCC---------------cccCCHHHHH
Confidence 389999996542 2235556666778888545443222110 100 0123467777
Q ss_pred HHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh----------hhHHHHHHHHHHHHHHH
Q 014581 294 SIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH----------GYGLVKRLCEELKDFMK 359 (422)
Q Consensus 294 ~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~----------Gp~~i~~i~~~l~~~m~ 359 (422)
.+++.+ ++||..+.=-....-...++.+||+.+...--+=.. .|.-++++.+.++..-.
T Consensus 187 ~lk~~f-------~~pVG~SDHt~G~~~~~aAva~GA~iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~ 255 (327)
T TIGR03586 187 DLAERF-------NVPVGLSDHTLGILAPVAAVALGACVIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWL 255 (327)
T ss_pred HHHHHh-------CCCEEeeCCCCchHHHHHHHHcCCCEEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHH
Confidence 788776 688855542222344566678999988876333221 24557777777765443
No 451
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.52 E-value=0.31 Score=47.86 Aligned_cols=115 Identities=20% Similarity=0.297 Sum_probs=69.1
Q ss_pred CCCcccccccccccccCCChHHH---HHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCC
Q 014581 113 GSAKGQIIGWENIELISDRPLET---MLKEFKQLKALYP-DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPH 188 (422)
Q Consensus 113 ~~a~~~~~Gl~n~~~~s~~~~e~---~l~~i~~~k~~~~-~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~ 188 (422)
|++..+++||...=++-+..+.. +.+.++++|+..+ ..+|.+.+. +.++..+ +.++|+|+|.+. +
T Consensus 156 GGg~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~---tleea~e----A~~~GaD~I~LD----n 224 (288)
T PRK07428 156 GGAINHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETE---TLEQVQE----ALEYGADIIMLD----N 224 (288)
T ss_pred cCcccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECC---CHHHHHH----HHHcCCCEEEEC----C
Confidence 44556777766332222211211 3456677777665 466777774 4555433 335799999987 1
Q ss_pred CCCccccccccccChhHHHHHHHHHhhc-cCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCc
Q 014581 189 GMPERKMGAAVGQDCRLLEEVCGWINAK-ATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 254 (422)
Q Consensus 189 ~~~~~~~G~~l~~~~~~v~~iv~~vr~~-~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~ 254 (422)
..++.++++++.+++. .++|+.+ +.+++ .+-+..+.+.|+|+|++..-+.
T Consensus 225 ------------~~~e~l~~av~~~~~~~~~i~leA--sGGIt--~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 225 ------------MPVDLMQQAVQLIRQQNPRVKIEA--SGNIT--LETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred ------------CCHHHHHHHHHHHHhcCCCeEEEE--ECCCC--HHHHHHHHHcCCCEEEEchhhh
Confidence 2356788888777652 3566665 34443 3445566799999998876443
No 452
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=94.47 E-value=3.1 Score=39.53 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=57.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccC----CCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEEC
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFS----CPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMT 226 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~s----cP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~ 226 (422)
.+..||. ..+...+.+-++.+++ |+|.+-+++- .||. .+ .+ ++++++|+.+++|+=|=|-
T Consensus 4 ~I~pSil-~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~----tf------g~----~~i~~ir~~t~~~~DvHLM 67 (229)
T PRK09722 4 KISPSLM-CMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNL----TL------SP----FFVSQVKKLASKPLDVHLM 67 (229)
T ss_pred eEEeehh-hcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCc----cc------CH----HHHHHHHhcCCCCeEEEEE
Confidence 4677886 4566667777788877 8999999873 4553 11 22 3566677766777655443
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEe
Q 014581 227 PNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 227 ~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
+.++...++.+.++|+|.|+++
T Consensus 68 --v~~P~~~i~~~~~aGad~it~H 89 (229)
T PRK09722 68 --VTDPQDYIDQLADAGADFITLH 89 (229)
T ss_pred --ecCHHHHHHHHHHcCCCEEEEC
Confidence 2367889999999999999877
No 453
>PLN02334 ribulose-phosphate 3-epimerase
Probab=94.46 E-value=2.2 Score=40.32 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=55.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC
Q 014581 151 ILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT 230 (422)
Q Consensus 151 pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~ 230 (422)
.+..|+. ..+...+.+.++++.+.|++.|.+.+---+..+... ..+ ++++++++.++.|+-+-+-- .
T Consensus 9 ~i~~s~~-~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~------~g~----~~~~~l~~~~~~~~~vhlmv--~ 75 (229)
T PLN02334 9 IIAPSIL-SADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLT------IGP----PVVKALRKHTDAPLDCHLMV--T 75 (229)
T ss_pred eEEeehh-hcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccc------cCH----HHHHHHHhcCCCcEEEEecc--C
Confidence 4667775 345567778888888899999999763111100001 111 45566666666665544332 2
Q ss_pred ChHHHHHHHHHcCCCEEEEec
Q 014581 231 DITEPARVALRSGSEGVSAIN 251 (422)
Q Consensus 231 ~~~~~a~~l~~aGadgi~v~n 251 (422)
++....+.+.++|+|+|+++-
T Consensus 76 ~p~d~~~~~~~~gad~v~vH~ 96 (229)
T PLN02334 76 NPEDYVPDFAKAGASIFTFHI 96 (229)
T ss_pred CHHHHHHHHHHcCCCEEEEee
Confidence 455677888999999998885
No 454
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.46 E-value=0.41 Score=46.90 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECC-CCCChHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTP-NITDITEPA 236 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~-~~~~~~~~a 236 (422)
.+.+.+.+.++.+.+.|++++-++-+. |....-..+.-.++++.+.+.+ ++||++=+.. +..+..+.+
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~---------GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a 89 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTT---------GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELT 89 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcC---------CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHH
Confidence 467788889999988999999887431 2222234444555666555544 5799987765 344578899
Q ss_pred HHHHHcCCCEEEEecCC
Q 014581 237 RVALRSGSEGVSAINTI 253 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~~ 253 (422)
+.++++|+|++.++-..
T Consensus 90 ~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 90 KFAEKAGADGALVVTPY 106 (292)
T ss_pred HHHHHcCCCEEEECCCc
Confidence 99999999999887543
No 455
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.43 E-value=1.5 Score=42.73 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECC-CCCChHHHHH
Q 014581 159 EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTP-NITDITEPAR 237 (422)
Q Consensus 159 ~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~-~~~~~~~~a~ 237 (422)
..+.+.+.+.++++.+.|+|+|-++-+. |....-+.+.-.++++.+.+..+ +|++=+.. +..+..++++
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~Gst---------GE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg~~~~~~ai~~a~ 85 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTT---------GLGPSLSFQEKLELLKAYSDITD-KVIFQVGSLNLEESIELAR 85 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccC---------CCcccCCHHHHHHHHHHHHHHcC-CEEEEeCcCCHHHHHHHHH
Confidence 3467888899999999999999887431 22223344555566666555553 46665543 2335788999
Q ss_pred HHHHcCCCEEEEecCC
Q 014581 238 VALRSGSEGVSAINTI 253 (422)
Q Consensus 238 ~l~~aGadgi~v~n~~ 253 (422)
.++++|+|++.++...
T Consensus 86 ~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 86 AAKSFGIYAIASLPPY 101 (279)
T ss_pred HHHHcCCCEEEEeCCc
Confidence 9999999999988654
No 456
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.42 E-value=5.7 Score=40.05 Aligned_cols=173 Identities=16% Similarity=0.150 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCC-CCCCCccccccccccChhHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSC-PHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~sc-P~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
+.+...++.+.+.++..||.+.+--+.+.+. ++++.++|+.-|-++-|. |... . -..++.+.+..+++++.
T Consensus 60 ~~~~~~~~~~a~~~~~VPValHLDHg~~~e~----i~~ai~~GftSVMiDgS~l~~~~-~---~~p~eENI~~Tkevve~ 131 (347)
T PRK09196 60 PFLRHLILAAVEEYPHIPVVMHQDHGNSPAT----CQRAIQLGFTSVMMDGSLKADGK-T---PASYEYNVDVTRKVVEM 131 (347)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCCHHH----HHHHHHcCCCEEEecCCCCcccC-C---CCCHHHHHHHHHHHHHH
Confidence 4444445555555545799999964444443 344556799999888763 2110 0 01234555666677765
Q ss_pred HhhccCccEEEEE-------------------------CCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCC
Q 014581 213 INAKATVPVWAKM-------------------------TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPE 267 (422)
Q Consensus 213 vr~~~~iPv~vKl-------------------------~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~ 267 (422)
.+.. +++|=.=| ...++++.+..+.+.+.|+|.+-+...+.
T Consensus 132 Ah~~-Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~------------- 197 (347)
T PRK09196 132 AHAC-GVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTS------------- 197 (347)
T ss_pred HHHc-CCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccc-------------
Confidence 5432 33332111 01156777777778889999986653221
Q ss_pred CCCCCCCccCCCCC---CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCC----------------------CHHHH
Q 014581 268 PCVEGYSTPGGYSC---KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVE----------------------TGGDA 322 (422)
Q Consensus 268 ~~~~~~~~~gG~sG---~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~----------------------s~~da 322 (422)
.|-|.+ |...-+.++.+++|++.++ ++|++.=||=. ..+++
T Consensus 198 --------HG~Yk~~~~p~~~~LdfdrL~eI~~~v~------~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i 263 (347)
T PRK09196 198 --------HGAYKFTRKPTGDVLAIDRIKEIHARLP------NTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEI 263 (347)
T ss_pred --------cCCCCCCCCCChhhccHHHHHHHHhcCC------CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHH
Confidence 122221 1000145677788888763 57877776653 35789
Q ss_pred HHHHHhCCCEEEEhhHHHhh
Q 014581 323 AEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 323 ~~~l~aGAd~V~vgtall~~ 342 (422)
.+++..|..=|=++|.+...
T Consensus 264 ~~ai~~GI~KINi~Tdl~~a 283 (347)
T PRK09196 264 QEGIKHGVRKVNIDTDLRLA 283 (347)
T ss_pred HHHHHCCCceEEeChHHHHH
Confidence 99999999999999988654
No 457
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.41 E-value=0.69 Score=46.15 Aligned_cols=110 Identities=8% Similarity=-0.025 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCC----HHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccccc-ccChhHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYN----KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAV-GQDCRLLE 207 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~----~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l-~~~~~~v~ 207 (422)
++...+.++.+++.. +.||.+-+..+.+ .+...++++.++++|+|+|.+|--.... ++|.+.- ...+..-+
T Consensus 108 p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~---qg~sg~~~~~~~~~~~ 183 (318)
T TIGR00742 108 ADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWL---SGLSPKENREIPPLRY 183 (318)
T ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhh---cCCCccccccCCchhH
Confidence 444555566666654 6899988854332 2566788999999999999998543211 1111000 00111223
Q ss_pred HHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 208 EVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 208 ~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
+.+..+++.. ++||+. +.++.+.....+.+ + |+|+|.+.
T Consensus 184 ~~i~~vk~~~~~ipVi~--NGdI~s~~da~~~l-~-g~dgVMig 223 (318)
T TIGR00742 184 ERVYQLKKDFPHLTIEI--NGGIKNSEQIKQHL-S-HVDGVMVG 223 (318)
T ss_pred HHHHHHHHhCCCCcEEE--ECCcCCHHHHHHHH-h-CCCEEEEC
Confidence 4556677665 799885 67777665555444 3 89998543
No 458
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.40 E-value=0.7 Score=46.89 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHH-HHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITE-PARV 238 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~-~a~~ 238 (422)
.+.+-|.++++.+.+.|+|-|-|- ++.+ .-+|....++++++|+.+++||-+-.... +.+.. ---+
T Consensus 153 Ht~e~yv~~akel~~~g~DSIciK----------DmaG--lltP~~ayelVk~iK~~~~~pv~lHtH~T-sG~a~m~ylk 219 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICIK----------DMAG--LLTPYEAYELVKAIKKELPVPVELHTHAT-SGMAEMTYLK 219 (472)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEee----------cccc--cCChHHHHHHHHHHHHhcCCeeEEecccc-cchHHHHHHH
Confidence 367889999999999999999764 1110 14567789999999999999998865432 22222 2345
Q ss_pred HHHcCCCEEE
Q 014581 239 ALRSGSEGVS 248 (422)
Q Consensus 239 l~~aGadgi~ 248 (422)
+.++|+|+|.
T Consensus 220 AvEAGvD~iD 229 (472)
T COG5016 220 AVEAGVDGID 229 (472)
T ss_pred HHHhCcchhh
Confidence 7899999984
No 459
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.55 Score=44.10 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC----------hHHHHH
Q 014581 168 LIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD----------ITEPAR 237 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~----------~~~~a~ 237 (422)
.+..++.+|||-|||-- ++.. . | +....- +++.+++..++|+.+-++|--.| +.+-.+
T Consensus 13 ~l~~A~~~GAdRiELC~-~La~---G--G--~TPSyG----~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~ 80 (241)
T COG3142 13 GLLAAQAAGADRIELCD-ALAE---G--G--LTPSYG----VIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIR 80 (241)
T ss_pred hHHHHHHcCCceeehhh-cccc---C--C--CCCCHH----HHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHH
Confidence 34556778999999842 1211 0 1 112222 33444444699999999984222 345567
Q ss_pred HHHHcCCCEEEEecC
Q 014581 238 VALRSGSEGVSAINT 252 (422)
Q Consensus 238 ~l~~aGadgi~v~n~ 252 (422)
.+.++|++||++..-
T Consensus 81 ~~~~lG~~GVV~G~l 95 (241)
T COG3142 81 LARELGVQGVVLGAL 95 (241)
T ss_pred HHHHcCCCcEEEeee
Confidence 789999999987643
No 460
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.38 E-value=0.62 Score=45.52 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=69.5
Q ss_pred CCCcccccccccccccCCChHH--HHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCC
Q 014581 113 GSAKGQIIGWENIELISDRPLE--TMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGM 190 (422)
Q Consensus 113 ~~a~~~~~Gl~n~~~~s~~~~e--~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~ 190 (422)
|++..+++||...=++-+.... .+.+.++++|+..|..+|.+=+- +.++..+ +.++|+|.|.|+=
T Consensus 144 GGg~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIeVEv~---~leea~~----a~~agaDiI~LDn------ 210 (278)
T PRK08385 144 GGGEPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVEVEVE---SLEDALK----AAKAGADIIMLDN------ 210 (278)
T ss_pred cCCcccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEEEEeC---CHHHHHH----HHHcCcCEEEECC------
Confidence 4455667776543333222222 24456777777666777666663 4555333 3457999999862
Q ss_pred CccccccccccChhHHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCc
Q 014581 191 PERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 254 (422)
Q Consensus 191 ~~~~~G~~l~~~~~~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~ 254 (422)
-+++.++++++.+++.. +.-+.+=.+.+++ .+-++...+.|+|.|++..-+.
T Consensus 211 ----------~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~--~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 211 ----------MTPEEIREVIEALKREGLRERVKIEVSGGIT--PENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred ----------CCHHHHHHHHHHHHhcCcCCCEEEEEECCCC--HHHHHHHHHcCCCEEEeChhhc
Confidence 23567888888776643 1123344456653 3456667789999998776443
No 461
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.36 E-value=5.7 Score=39.03 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhC-CCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 133 LETMLKEFKQLKALY-PDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~-~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.+.+...++.+.++. .+.||.+.+--+.+.+. ++++.++|+.-|-++-|.- .++.+.+..+++++
T Consensus 60 ~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~----i~~ai~~GftSVMiDgS~l----------p~eeNi~~T~~vv~ 125 (288)
T TIGR00167 60 LGAISAMVKAMSEAYPYGVPVALHLDHGASEED----CAQAVKAGFSSVMIDGSHE----------PFEENIELTKKVVE 125 (288)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEECCCCCCHHH----HHHHHHcCCCEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 444544444444332 26799999964444433 3444467999988886632 12345566677776
Q ss_pred HHhhccCccEEEEEC---------------CCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCcc
Q 014581 212 WINAKATVPVWAKMT---------------PNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTP 276 (422)
Q Consensus 212 ~vr~~~~iPv~vKl~---------------~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~ 276 (422)
..+.. +++|=.=|. ..++++.+..+.+.+.|+|.+.+.-.+. .
T Consensus 126 ~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~---------------------H 183 (288)
T TIGR00167 126 RAHKM-GVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNV---------------------H 183 (288)
T ss_pred HHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCcc---------------------c
Confidence 55432 333322110 1145666666667778999997653221 2
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCH-HHHHHHHHhCCCEEEEhhHHHhh
Q 014581 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETG-GDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 277 gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~-~da~~~l~aGAd~V~vgtall~~ 342 (422)
|.|.+.+ .++.++.++++++.+ ++|+..=||=..+ +++.+++..|..=|=++|.+...
T Consensus 184 G~y~~~p-~~Ld~~~L~~I~~~v-------~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 242 (288)
T TIGR00167 184 GVYKGEP-KGLDFERLEEIQKYV-------NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIA 242 (288)
T ss_pred cccCCCC-CccCHHHHHHHHHHh-------CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHH
Confidence 3333221 124567788888877 7888888887666 67889999999999999988754
No 462
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.36 E-value=2.3 Score=45.99 Aligned_cols=174 Identities=14% Similarity=0.168 Sum_probs=98.9
Q ss_pred HHHHHHhhCCCCeEEEEeCC----CC--CHHH-HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 139 EFKQLKALYPDKILIASIME----EY--NKAA-WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~----~~--~~~~-~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
.++.+++..|+.++-.-+.+ ++ -+++ ....++++.+.|.|.+-+=-+ .++.+.++.-++
T Consensus 65 rl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~--------------lnd~~n~~~~i~ 130 (596)
T PRK14042 65 RLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDA--------------LNDARNLKVAID 130 (596)
T ss_pred HHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEccc--------------CcchHHHHHHHH
Confidence 34555555677776654421 22 2344 445677778889999875321 144556777777
Q ss_pred HHhhccCcc---EEEEECCCCC--ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcch
Q 014581 212 WINAKATVP---VWAKMTPNIT--DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHP 286 (422)
Q Consensus 212 ~vr~~~~iP---v~vKl~~~~~--~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p 286 (422)
++|+.-..- |..-.+|-.+ ...++++.+.++|++.|.+-.+.+- + .|
T Consensus 131 ~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~-----------------------l-----~P 182 (596)
T PRK14042 131 AIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGL-----------------------L-----TP 182 (596)
T ss_pred HHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccC-----------------------C-----CH
Confidence 887753221 1112234222 2578899999999999887765431 1 23
Q ss_pred h-HHHHHHHHHHHhhccCCCCCceEEEe----cCCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHc
Q 014581 287 I-ALGKVMSIAKMMKSEFNDKDYSLSGI----GGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMH 361 (422)
Q Consensus 287 ~-al~~v~~i~~~~~~~~~~~~ipIIa~----GGI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~ 361 (422)
. +.+.|+.+++.+ ++||-.= -|.. ....++++.+||+.|..+-.=+-.++.-. =.+.+-..|+..
T Consensus 183 ~~v~~lv~alk~~~-------~ipi~~H~Hnt~Gla-~an~laAieaGad~iD~ai~glGg~tGn~--~tE~lv~~L~~~ 252 (596)
T PRK14042 183 TVTVELYAGLKQAT-------GLPVHLHSHSTSGLA-SICHYEAVLAGCNHIDTAISSFSGGASHP--PTEALVAALTDT 252 (596)
T ss_pred HHHHHHHHHHHhhc-------CCEEEEEeCCCCCcH-HHHHHHHHHhCCCEEEeccccccCCCCcH--hHHHHHHHHHhc
Confidence 3 234556666554 4665332 2332 34567778899999988865555444321 123333445556
Q ss_pred CCC
Q 014581 362 NFS 364 (422)
Q Consensus 362 G~~ 364 (422)
||+
T Consensus 253 g~~ 255 (596)
T PRK14042 253 PYD 255 (596)
T ss_pred CCC
Confidence 665
No 463
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.35 E-value=2.1 Score=41.58 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCEEEEccCCC---CCCCccccccccccChhHHHHHHHHHhhccCcc-EEEEEC-CCC-CCh---HH-HHH
Q 014581 168 LIDRVEETGIDAIEVNFSCP---HGMPERKMGAAVGQDCRLLEEVCGWINAKATVP-VWAKMT-PNI-TDI---TE-PAR 237 (422)
Q Consensus 168 ~a~~~~~aGaD~iElN~scP---~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iP-v~vKl~-~~~-~~~---~~-~a~ 237 (422)
.|+.++++|+|+|-+.-|.- +..+ + ...-..+.+...++.|++.++.| |++=++ ..+ .+. .+ ..+
T Consensus 27 sArl~e~aG~d~i~vGds~~~~~lG~~--D---t~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r 101 (264)
T PRK00311 27 FAKLFDEAGVDVILVGDSLGMVVLGYD--S---TLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGR 101 (264)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCC--C---CCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHH
Confidence 46778889999996531100 1100 0 01124456666777777777776 777664 223 222 23 334
Q ss_pred HHHHcCCCEEEEec
Q 014581 238 VALRSGSEGVSAIN 251 (422)
Q Consensus 238 ~l~~aGadgi~v~n 251 (422)
.++++|+++|.+-+
T Consensus 102 ~~~~aGa~aVkiEd 115 (264)
T PRK00311 102 LMKEAGAHAVKLEG 115 (264)
T ss_pred HHHHhCCeEEEEcC
Confidence 44559999996543
No 464
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=94.33 E-value=1.7 Score=41.89 Aligned_cols=137 Identities=16% Similarity=0.239 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHHHHHHHHHHhhCC
Q 014581 69 TNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYP 148 (422)
Q Consensus 69 ~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~l~~i~~~k~~~~ 148 (422)
+++-..+.+.++|.-.+-++-- .+ ...+|+.+-- +-++|+.+...+.+++..|
T Consensus 24 YD~~~A~~~d~agvD~iLVGDS------lg------------------mv~~G~~sT~---~vtld~mi~h~~aV~Rga~ 76 (261)
T PF02548_consen 24 YDYPSARIADEAGVDIILVGDS------LG------------------MVVLGYDSTL---PVTLDEMIYHTKAVRRGAP 76 (261)
T ss_dssp -SHHHHHHHHHTT-SEEEE-TT------HH------------------HHTT--SSST---T--HHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHcCCCEEEeCCc------HH------------------HheeCCCCCc---CcCHHHHHHHHHHHHhcCC
Confidence 4567677777788888776521 11 1122333221 2347888888888887776
Q ss_pred CCeEEEEeCC-C--CCHHHHHHHHHHH-HHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEE
Q 014581 149 DKILIASIME-E--YNKAAWEELIDRV-EETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAK 224 (422)
Q Consensus 149 ~~pvi~si~~-~--~~~~~~~~~a~~~-~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vK 224 (422)
+..+++.+-. . .++++..+.|.++ +++|||++-|--+. . ..++++++.+. .+||+-=
T Consensus 77 ~~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~--------------~----~~~~i~~l~~~-GIPV~gH 137 (261)
T PF02548_consen 77 NAFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA--------------E----IAETIKALVDA-GIPVMGH 137 (261)
T ss_dssp SSEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG--------------G----GHHHHHHHHHT-T--EEEE
T ss_pred CceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccch--------------h----HHHHHHHHHHC-CCcEEEE
Confidence 6777777642 2 2677766666555 55999999876210 1 22344444333 8999865
Q ss_pred E--CCC-------CC----------ChHHHHHHHHHcCCCEEEEec
Q 014581 225 M--TPN-------IT----------DITEPARVALRSGSEGVSAIN 251 (422)
Q Consensus 225 l--~~~-------~~----------~~~~~a~~l~~aGadgi~v~n 251 (422)
+ +|. +. .+.+.|+.++++|+-+|++-.
T Consensus 138 iGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~ 183 (261)
T PF02548_consen 138 IGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLEC 183 (261)
T ss_dssp EES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEES
T ss_pred ecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeec
Confidence 4 332 10 256778889999999997664
No 465
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=94.31 E-value=5.9 Score=39.88 Aligned_cols=174 Identities=17% Similarity=0.166 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+..-++.+.+.+++.||.+.+--+.+.+. ++++.++|+.-|-++-|.-.. ..-...++.+.+..+++++.
T Consensus 57 ~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~----i~~Ai~~GFtSVMiDgS~l~~---~~~~~p~eENI~~Tkevve~ 129 (347)
T TIGR01521 57 APFLRHLILAAIEEYPHIPVVMHQDHGNSPAT----CQRAIQLGFTSVMMDGSLRED---AKTPADYDYNVRVTAEVVAF 129 (347)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH----HHHHHHcCCCEEeecCcCCcc---cCCCCCHHHHHHHHHHHHHH
Confidence 34444455555555534899999964545443 344556799999988764210 00001234455666777765
Q ss_pred HhhccCccEEEEE-------------------------CCCCCChHHHHHHHHHcCCCEEEEec-CCcccccccccCCCC
Q 014581 213 INAKATVPVWAKM-------------------------TPNITDITEPARVALRSGSEGVSAIN-TIMSVMGIDLKTLRP 266 (422)
Q Consensus 213 vr~~~~iPv~vKl-------------------------~~~~~~~~~~a~~l~~aGadgi~v~n-~~~~~~~id~e~~~p 266 (422)
.+.. .+.|=.=| ...++++.+..+.+.+.|+|.+.+.- |..+
T Consensus 130 Ah~~-GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG----------- 197 (347)
T TIGR01521 130 AHAV-GASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHG----------- 197 (347)
T ss_pred HHHc-CCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccC-----------
Confidence 5432 22221100 01155667777777889999986643 3222
Q ss_pred CCCCCCCCccCCCCC---CCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCH----------------------HH
Q 014581 267 EPCVEGYSTPGGYSC---KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETG----------------------GD 321 (422)
Q Consensus 267 ~~~~~~~~~~gG~sG---~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~----------------------~d 321 (422)
-|.+ |.-..+.++.+++|++.++ ++|++.=||=..+ ++
T Consensus 198 -----------~Yk~~~~p~~~~Ld~~rL~eI~~~v~------~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~ 260 (347)
T TIGR01521 198 -----------AYKFTRKPTGEVLAIQRIEEIHARLP------DTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEE 260 (347)
T ss_pred -----------CcCCCCCCChhhcCHHHHHHHHccCC------CCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHH
Confidence 1211 1000145667788887762 5888888876655 88
Q ss_pred HHHHHHhCCCEEEEhhHHHhh
Q 014581 322 AAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 322 a~~~l~aGAd~V~vgtall~~ 342 (422)
+.+++..|..=|=++|.+...
T Consensus 261 i~~ai~~GI~KVNi~Tdl~~a 281 (347)
T TIGR01521 261 IVEGIKYGVRKVNIDTDLRLA 281 (347)
T ss_pred HHHHHHCCCeeEEeChHHHHH
Confidence 999999999999999988654
No 466
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.30 E-value=3.3 Score=43.27 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=83.9
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCC---C---ChHHHHHHH
Q 014581 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNI---T---DITEPARVA 239 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~---~---~~~~~a~~l 239 (422)
.+.++++.++|+|.+.+=.++ ++.+.+.+.++.+|+. ..-+.+-++... . ...++++.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~l--------------nd~~n~~~~v~~ak~~-G~~v~~~i~~t~~p~~~~~~~~~~a~~l 163 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDAL--------------NDVRNLETAVKATKKA-GGHAQVAISYTTSPVHTIDYFVKLAKEM 163 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEec--------------CcHHHHHHHHHHHHHc-CCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 455677778899987765432 1123466677777765 333322222211 1 257889999
Q ss_pred HHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchh-HHHHHHHHHHHhhccCCCCCceEEE----ec
Q 014581 240 LRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPI-ALGKVMSIAKMMKSEFNDKDYSLSG----IG 314 (422)
Q Consensus 240 ~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~-al~~v~~i~~~~~~~~~~~~ipIIa----~G 314 (422)
.++|+|.|.+..+.+- + .|. ..+.|+.+++.+ ++||-. +-
T Consensus 164 ~~~Gad~I~i~Dt~G~-----------------------l-----~P~~v~~lv~alk~~~-------~~pi~~H~Hnt~ 208 (448)
T PRK12331 164 QEMGADSICIKDMAGI-----------------------L-----TPYVAYELVKRIKEAV-------TVPLEVHTHATS 208 (448)
T ss_pred HHcCCCEEEEcCCCCC-----------------------C-----CHHHHHHHHHHHHHhc-------CCeEEEEecCCC
Confidence 9999999988776532 1 132 234556666554 466544 34
Q ss_pred CCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHcCCC
Q 014581 315 GVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFS 364 (422)
Q Consensus 315 GI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~G~~ 364 (422)
|.. ...+.+++.+||+.|..+-.=+..|..- -=.+.+-..|+..|++
T Consensus 209 GlA-~AN~laAieaGad~vD~sv~glg~gaGN--~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 209 GIA-EMTYLKAIEAGADIIDTAISPFAGGTSQ--PATESMVAALQDLGYD 255 (448)
T ss_pred CcH-HHHHHHHHHcCCCEEEeeccccCCCcCC--HhHHHHHHHHHhcCCC
Confidence 443 4567788899999998886544433221 1123333344455665
No 467
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.30 E-value=4.7 Score=39.06 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVA 239 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l 239 (422)
++.++-.++++.+.++|+|.||+.+..... ....|...-.+.+.++++.+..+ .+.++.+-+++...+ .+..+.+
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~-~~~l~~a 91 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPE--KEFKGKSAFCDDEFLRRLLGDSK--GNTKIAVMVDYGNDD-IDLLEPA 91 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCc--cccCCCccCCCHHHHHHHHhhhc--cCCEEEEEECCCCCC-HHHHHHH
Confidence 568888999999999999999998633221 11122222345566666666543 145565555554322 4566777
Q ss_pred HHcCCCEEEEe
Q 014581 240 LRSGSEGVSAI 250 (422)
Q Consensus 240 ~~aGadgi~v~ 250 (422)
.+.|++.|.+.
T Consensus 92 ~~~gv~~iri~ 102 (266)
T cd07944 92 SGSVVDMIRVA 102 (266)
T ss_pred hcCCcCEEEEe
Confidence 88999987665
No 468
>PLN02535 glycolate oxidase
Probab=94.27 E-value=1.5 Score=44.52 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC--ChHHHHHHH
Q 014581 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT--DITEPARVA 239 (422)
Q Consensus 162 ~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~--~~~~~a~~l 239 (422)
++.-..+|+.+.++|.-.+-=.+++ . .+++|.+ ..+-|.+.++-..-+ -..++.+++
T Consensus 88 p~gE~a~AraA~~~g~~~~lSt~s~--------------~---slEeva~----~~~~~~wfQlY~~~dr~~~~~ll~RA 146 (364)
T PLN02535 88 PEGEIATARAAAACNTIMVLSFMAS--------------C---TVEEVAS----SCNAVRFLQLYVYKRRDIAAQLVQRA 146 (364)
T ss_pred cchHHHHHHHHHHcCCCeEecCccc--------------C---CHHHHHh----cCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 3333566777777776555322211 1 1334432 235688888865322 257888999
Q ss_pred HHcCCCEEEEecCCcc--cccccccCCCCCC---CCCCC-C-ccCCCCCC--------C-cchhHHHHHHHHHHHhhccC
Q 014581 240 LRSGSEGVSAINTIMS--VMGIDLKTLRPEP---CVEGY-S-TPGGYSCK--------A-VHPIALGKVMSIAKMMKSEF 303 (422)
Q Consensus 240 ~~aGadgi~v~n~~~~--~~~id~e~~~p~~---~~~~~-~-~~gG~sG~--------~-i~p~al~~v~~i~~~~~~~~ 303 (422)
+++|+.+|+++--.+. .-.-|..+.-..| ...+. . ...+..+. . -.+.+++.|+.+++..
T Consensus 147 ~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~---- 222 (364)
T PLN02535 147 EKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSIT---- 222 (364)
T ss_pred HHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhcc----
Confidence 9999999987632110 0000111110000 00000 0 00000000 0 1245677788888765
Q ss_pred CCCCceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 304 NDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 304 ~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
++||| ..||.+++|+.+++.+|+|+|.+.
T Consensus 223 ---~~Pvi-vKgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 223 ---NLPIL-IKGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred ---CCCEE-EecCCCHHHHHHHHhcCCCEEEEe
Confidence 78876 468899999999999999999885
No 469
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.27 E-value=0.59 Score=45.86 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=58.3
Q ss_pred HHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCc
Q 014581 206 LEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAV 284 (422)
Q Consensus 206 v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i 284 (422)
+.+.++.+|+.. .+|+.|= +++.. -+..+.++|+|.|-+=|...
T Consensus 186 i~~ai~~~r~~~~~~kIeVE----v~tl~-ea~eal~~gaDiI~LDnm~~------------------------------ 230 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVE----VDSLE-QLDEVLAEGAELVLLDNFPV------------------------------ 230 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEE----cCCHH-HHHHHHHcCCCEEEeCCCCH------------------------------
Confidence 344555555532 4556554 33334 56667799999886654321
Q ss_pred chhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 285 HPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 285 ~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
+.++++.+.++... .++.|.++|||. .+.+.++..+|+|.+.+|+...
T Consensus 231 -----e~vk~av~~~~~~~--~~v~ieaSGGI~-~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 231 -----WQTQEAVQRRDARA--PTVLLESSGGLT-LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -----HHHHHHHHHHhccC--CCEEEEEECCCC-HHHHHHHHhcCCCEEEeChhhc
Confidence 12222222221111 278999999995 9999999999999999998654
No 470
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.26 E-value=4.5 Score=42.83 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCeEEEEeCC-------CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHH
Q 014581 138 KEFKQLKALYPDKILIASIME-------EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVC 210 (422)
Q Consensus 138 ~~i~~~k~~~~~~pvi~si~~-------~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv 210 (422)
+.++.+++..|+.++..=+.+ .+..+-....+++..+.|.|. +.+++|- ++.+.++..+
T Consensus 65 erlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi--~RIfd~l------------ndv~nl~~ai 130 (499)
T PRK12330 65 ERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDV--FRVFDAL------------NDPRNLEHAM 130 (499)
T ss_pred HHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCE--EEEEecC------------ChHHHHHHHH
Q ss_pred HHHhhccCcc-EEEEE--CCCCCC--hHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcc
Q 014581 211 GWINAKATVP-VWAKM--TPNITD--ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVH 285 (422)
Q Consensus 211 ~~vr~~~~iP-v~vKl--~~~~~~--~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~ 285 (422)
+++++..... ..+-. +|-.+. ..++++.+.++|++.|.+-.+.+-. .|
T Consensus 131 ~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll--------~P------------------- 183 (499)
T PRK12330 131 KAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAALL--------KP------------------- 183 (499)
T ss_pred HHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCC--------CH-------------------
Q ss_pred hhHHHHHHHHHHHhhccCCCCCceEEEec----CCCCHHHHHHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHHHHHc
Q 014581 286 PIALGKVMSIAKMMKSEFNDKDYSLSGIG----GVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMH 361 (422)
Q Consensus 286 p~al~~v~~i~~~~~~~~~~~~ipIIa~G----GI~s~~da~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~m~~~ 361 (422)
..+.+.|+.+++.++. ++||-.=. |.. ....++++.+||+.|..+-.=+-.++.-..- +.+-..|+..
T Consensus 184 ~~~~~LV~~Lk~~~~~-----~ipI~~H~Hnt~GlA-~An~laAieAGad~vDtai~Glg~~aGn~at--E~vv~~L~~~ 255 (499)
T PRK12330 184 QPAYDIVKGIKEACGE-----DTRINLHCHSTTGVT-LVSLMKAIEAGVDVVDTAISSMSLGPGHNPT--ESLVEMLEGT 255 (499)
T ss_pred HHHHHHHHHHHHhCCC-----CCeEEEEeCCCCCcH-HHHHHHHHHcCCCEEEeecccccccccchhH--HHHHHHHHhc
Q ss_pred CCCC
Q 014581 362 NFSS 365 (422)
Q Consensus 362 G~~s 365 (422)
|+++
T Consensus 256 g~~t 259 (499)
T PRK12330 256 GYTT 259 (499)
T ss_pred CCCC
No 471
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.24 E-value=1.3 Score=43.69 Aligned_cols=132 Identities=14% Similarity=0.026 Sum_probs=80.5
Q ss_pred CCeEEEEeCCCC---CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEE
Q 014581 149 DKILIASIMEEY---NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225 (422)
Q Consensus 149 ~~pvi~si~~~~---~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl 225 (422)
+.|++++=+.+. +++.-..+++.+.+.|..+.- ++-.. ..++ .+++....|+++-+
T Consensus 64 ~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~---~~~~~-----------~~~~-------~i~~~~~~~~~~ql 122 (299)
T cd02809 64 AMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTL---STVST-----------TSLE-------EVAAAAPGPRWFQL 122 (299)
T ss_pred CCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEe---cCCCc-----------CCHH-------HHHHhcCCCeEEEE
Confidence 457776554221 333336677777777765532 11000 1112 22222347999888
Q ss_pred CCC--CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccC
Q 014581 226 TPN--ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEF 303 (422)
Q Consensus 226 ~~~--~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~ 303 (422)
... .....+.++.+.+.|+++|.++-.... + +.. ..++.++++++.+
T Consensus 123 ~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~------------~--------~~~-------~~~~~i~~l~~~~---- 171 (299)
T cd02809 123 YVPRDREITEDLLRRAEAAGYKALVLTVDTPV------------L--------GRR-------LTWDDLAWLRSQW---- 171 (299)
T ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecCCCC------------C--------CCC-------CCHHHHHHHHHhc----
Confidence 543 233566778888899999876532110 0 100 2346777888776
Q ss_pred CCCCceEEEecCCCCHHHHHHHHHhCCCEEEEh
Q 014581 304 NDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336 (422)
Q Consensus 304 ~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vg 336 (422)
++||+.- ++.+.+++.++..+|||+|-+.
T Consensus 172 ---~~pvivK-~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 172 ---KGPLILK-GILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred ---CCCEEEe-ecCCHHHHHHHHHCCCCEEEEc
Confidence 6888875 5899999999999999999884
No 472
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.22 E-value=4.2 Score=38.86 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=96.2
Q ss_pred HHHHHHhCCCEEEEcc---CCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCC----hHHHHHHHHH
Q 014581 169 IDRVEETGIDAIEVNF---SCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD----ITEPARVALR 241 (422)
Q Consensus 169 a~~~~~aGaD~iElN~---scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~----~~~~a~~l~~ 241 (422)
|+.++.+|++++-+-- +.-.+.++. | .-..+.+.+.++.|.+.+++||++=+-..+.+ +.+.++.+.+
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~--~---~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~ 96 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDG--G---LLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELER 96 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SS--S----S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCC--C---CCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHH
Confidence 5777888999987741 111111111 0 12344555667777777899999998766654 4677888999
Q ss_pred cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC---
Q 014581 242 SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET--- 318 (422)
Q Consensus 242 aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s--- 318 (422)
+|+.||.+-.. .. + ..++.+.|.. +.+.+|+.+...+- ..++-|++=-....
T Consensus 97 aG~agi~IEDq-~~---------------------~-~~~~~l~~~e-e~~~kI~Aa~~a~~-~~~~~I~ARTDa~~~~~ 151 (238)
T PF13714_consen 97 AGAAGINIEDQ-RC---------------------G-HGGKQLVSPE-EMVAKIRAAVDARR-DPDFVIIARTDAFLRAE 151 (238)
T ss_dssp CT-SEEEEESB-ST---------------------T-TSTT-B--HH-HHHHHHHHHHHHHS-STTSEEEEEECHHCHHH
T ss_pred cCCcEEEeecc-cc---------------------C-CCCCceeCHH-HHHHHHHHHHHhcc-CCeEEEEEeccccccCC
Confidence 99999976643 00 0 1222233322 34455544432111 12577887666532
Q ss_pred --HHHH----HHHHHhCCCEEEEhhHHHhhhhHHHHHHHHHHHHH----HHHcCCCCHHHhhcCCcccCCChhHH
Q 014581 319 --GGDA----AEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDF----MKMHNFSSIEDFRGASIEYFTTHTEL 383 (422)
Q Consensus 319 --~~da----~~~l~aGAd~V~vgtall~~Gp~~i~~i~~~l~~~----m~~~G~~si~d~~G~~~~~~~~~~~~ 383 (422)
.+++ ..|..+|||+|.+-.. .+ ..-++++.+++. + +...+--+++|+.-.....+.-+..+
T Consensus 152 ~~~deaI~R~~aY~eAGAD~ifi~~~--~~-~~~i~~~~~~~~-~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 152 EGLDEAIERAKAYAEAGADMIFIPGL--QS-EEEIERIVKAVD-GPLNVNPGPGTLSAEELAELGVKRVSYGNSL 222 (238)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEETTS--SS-HHHHHHHHHHHS-SEEEEETTSSSS-HHHHHHTTESEEEETSHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC--CC-HHHHHHHHHhcC-CCEEEEcCCCCCCHHHHHHCCCcEEEEcHHH
Confidence 2333 3455789999998765 22 334677776663 2 11233456777765555544433333
No 473
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.20 E-value=0.29 Score=48.00 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=59.9
Q ss_pred HHHHHHHHhhccC--ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 206 LEEVCGWINAKAT--VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 206 v~~iv~~vr~~~~--iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
+.+.++.+|+... ++|.| .+++. +-++.+.++|+|.|.+=|-.+
T Consensus 183 i~~av~~~r~~~~~~~kIeV----Ev~tl-eea~~a~~agaDiImLDnmsp----------------------------- 228 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEV----EVESL-AAAEEAAAAGADIIMLDNMSL----------------------------- 228 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEE----ECCCH-HHHHHHHHcCCCEEEECCCCH-----------------------------
Confidence 4445555555432 34444 34444 557778899999886655321
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
+.++++.+.+++ ++.+.++|||. .+.+.++..+|+|.+.+|+...
T Consensus 229 ------e~l~~av~~~~~-----~~~leaSGGI~-~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 229 ------EQIEQAITLIAG-----RSRIECSGNID-MTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred ------HHHHHHHHHhcC-----ceEEEEECCCC-HHHHHHHHhcCCCEEEeCcccc
Confidence 233444444433 68899999995 9999999999999999998544
No 474
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.19 E-value=1.9 Score=43.55 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=87.1
Q ss_pred CCeEEEEeCC---CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEE
Q 014581 149 DKILIASIME---EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKM 225 (422)
Q Consensus 149 ~~pvi~si~~---~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl 225 (422)
..||+++=+. ...++.-..+|+.++++|.-+.- |...+ ..+++|.+.. ..+.|+++=+
T Consensus 64 ~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~l---ss~s~--------------~s~e~v~~~~--~~~~~~w~Ql 124 (344)
T cd02922 64 SLPFFISPAALAKLAHPDGELNLARAAGKHGILQMI---STNAS--------------CSLEEIVDAR--PPDQPLFFQL 124 (344)
T ss_pred CCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEe---cCccc--------------CCHHHHHHhc--CCCCcEEEEE
Confidence 5687775542 12344446778888887765542 21111 1244443321 1136777655
Q ss_pred CCC--CCChHHHHHHHHHcCCCEEEEecCCcccccc---cccCC--CCCC-CCCC----CCccCC--CCCCCc-chhHHH
Q 014581 226 TPN--ITDITEPARVALRSGSEGVSAINTIMSVMGI---DLKTL--RPEP-CVEG----YSTPGG--YSCKAV-HPIALG 290 (422)
Q Consensus 226 ~~~--~~~~~~~a~~l~~aGadgi~v~n~~~~~~~i---d~e~~--~p~~-~~~~----~~~~gG--~sG~~i-~p~al~ 290 (422)
-.. -....++.++++++|+++|+++=-... .+. |..+. .|.. .... ....++ +.+..+ ....++
T Consensus 125 y~~~d~~~~~~l~~ra~~ag~~alvltvD~p~-~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (344)
T cd02922 125 YVNKDRTKTEELLKRAEKLGAKAIFLTVDAPV-LGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWD 203 (344)
T ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEECCCCC-cCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHH
Confidence 322 122578889999999999988732210 000 11110 0100 0000 000000 000001 124567
Q ss_pred HHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 291 KVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 291 ~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
.|+++++.. ++|||.- ||.+.+|+..+..+|+|+|.+.-
T Consensus 204 ~i~~l~~~~-------~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 204 DIKWLRKHT-------KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred HHHHHHHhc-------CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 778888765 7898877 88999999999999999998864
No 475
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.19 E-value=0.52 Score=46.00 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCCcccccccccccccCCChHHH---HHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCC
Q 014581 113 GSAKGQIIGWENIELISDRPLET---MLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHG 189 (422)
Q Consensus 113 ~~a~~~~~Gl~n~~~~s~~~~e~---~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~ 189 (422)
|++..+++||...-++-+..+.. +...++++++..|+.+|.+++. +.++. +.+.++|+|+|.+. +
T Consensus 150 GGg~~HR~~L~d~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~---tleea----~eA~~~gaD~I~LD----~- 217 (277)
T PRK05742 150 GGCHNHRIGLYDAFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVE---SLDEL----RQALAAGADIVMLD----E- 217 (277)
T ss_pred cCCccccCCCcccEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeC---CHHHH----HHHHHcCCCEEEEC----C-
Confidence 44556667765443332221211 1234566666556778888873 44443 33446799999764 2
Q ss_pred CCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCc
Q 014581 190 MPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIM 254 (422)
Q Consensus 190 ~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~ 254 (422)
..++.++++++.++ .++|+.+= .+++ .+-+..+.+.|+|+|.+..-+.
T Consensus 218 -----------~~~e~l~~~v~~~~--~~i~leAs--GGIt--~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 218 -----------LSLDDMREAVRLTA--GRAKLEAS--GGIN--ESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred -----------CCHHHHHHHHHHhC--CCCcEEEE--CCCC--HHHHHHHHHcCCCEEEEChhhc
Confidence 23466777776654 26787763 3432 3455677799999998765443
No 476
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=94.17 E-value=1.1 Score=42.18 Aligned_cols=161 Identities=18% Similarity=0.207 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVA 239 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l 239 (422)
.+.++-.++++.+.++|+|.||+.+.... ..+.+.++++.+.+.. ..+.+-.++...++...++.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~-----------~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFAS-----------EDDFEQVRRLREALPN---ARLQALCRANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSS-----------HHHHHHHHHHHHHHHS---SEEEEEEESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccC-----------HHHHHHhhhhhhhhcc---cccceeeeehHHHHHHHHHhh
Confidence 46778889999999999999999842211 1233455555555543 444444555444455556777
Q ss_pred HHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEec---CC
Q 014581 240 LRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIG---GV 316 (422)
Q Consensus 240 ~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~G---GI 316 (422)
.+.|++.+.+....... ..+. .-+.+ ....++.+.++.+...+. +..+..+. +-
T Consensus 77 ~~~g~~~i~i~~~~s~~---~~~~------------~~~~~----~~~~~~~~~~~v~~ak~~----g~~v~~~~~~~~~ 133 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDL---HIRK------------NLNKS----REEALERIEEAVKYAKEL----GYEVAFGCEDASR 133 (237)
T ss_dssp HHTTSSEEEEEEETSHH---HHHH------------HTCSH----HHHHHHHHHHHHHHHHHT----TSEEEEEETTTGG
T ss_pred HhccCCEEEecCcccHH---HHHH------------hhcCC----HHHHHHHHHHHHHHHHhc----CCceEeCcccccc
Confidence 88999999877644320 0000 00011 122333343333333221 34443332 45
Q ss_pred CCHHHHHHHH----HhCCCEEEEh-hHHHhhhhHHHHHHHHHHHHHH
Q 014581 317 ETGGDAAEFI----LLGANTVQVC-TGVMMHGYGLVKRLCEELKDFM 358 (422)
Q Consensus 317 ~s~~da~~~l----~aGAd~V~vg-tall~~Gp~~i~~i~~~l~~~m 358 (422)
.+++++.++. .+|++.|.++ |.=... |..+.++.+.+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~-P~~v~~lv~~~~~~~ 179 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGIMT-PEDVAELVRALREAL 179 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS-S--HHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCCcC-HHHHHHHHHHHHHhc
Confidence 5777777665 3699999998 333333 777777777765443
No 477
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=94.17 E-value=6.5 Score=38.96 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWI 213 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~v 213 (422)
+.+...++.+.++++..||.+.+--+.+.+. ++++.++|++-+-++-|.- .++.+.+..+++++..
T Consensus 59 ~~~~~~~~~~a~~~~~VPValHLDHg~~~e~----i~~ai~~GftSVM~DgS~l----------~~eeNi~~T~~vve~A 124 (307)
T PRK05835 59 DMAVGMVKIMCERYPHIPVALHLDHGTTFES----CEKAVKAGFTSVMIDASHH----------AFEENLELTSKVVKMA 124 (307)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCCC----------CHHHHHHHHHHHHHHH
Confidence 4444445555555534899999964444433 3445567999988886531 1234556666777665
Q ss_pred hhccCccEEEEE---------------CCCCCChHHHHHHHHHcCCCEEEEec-CCcccccccccCCCCCCCCCCCCccC
Q 014581 214 NAKATVPVWAKM---------------TPNITDITEPARVALRSGSEGVSAIN-TIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 214 r~~~~iPv~vKl---------------~~~~~~~~~~a~~l~~aGadgi~v~n-~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
+.. +++|=.=| ...++++.+..+.+.+.|+|.+-+.- |.. |
T Consensus 125 h~~-gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~H----------------------G 181 (307)
T PRK05835 125 HNA-GVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSH----------------------G 181 (307)
T ss_pred HHc-CCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccc----------------------c
Confidence 532 33321111 01145667777777789999986643 322 2
Q ss_pred CCC--CCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHH----------------------HHHHHHHhCCCEE
Q 014581 278 GYS--CKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGG----------------------DAAEFILLGANTV 333 (422)
Q Consensus 278 G~s--G~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~----------------------da~~~l~aGAd~V 333 (422)
-|. |++ .+.++.+++|++.+ ++|++.=||=..++ ++.+++..|..=|
T Consensus 182 ~Yk~~~~p--~L~f~~L~~I~~~~-------~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~Ki 252 (307)
T PRK05835 182 AFKFKGEP--KLDFERLQEVKRLT-------NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKV 252 (307)
T ss_pred ccCCCCCC--ccCHHHHHHHHHHh-------CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEE
Confidence 221 211 24567778888876 78888888876666 7999999999999
Q ss_pred EEhhHHHhh
Q 014581 334 QVCTGVMMH 342 (422)
Q Consensus 334 ~vgtall~~ 342 (422)
=++|.+...
T Consensus 253 Ni~T~l~~a 261 (307)
T PRK05835 253 NTDTDLRIA 261 (307)
T ss_pred EeChHHHHH
Confidence 999988654
No 478
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=94.17 E-value=0.31 Score=45.31 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=34.6
Q ss_pred CceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall~~ 342 (422)
++-+++-.||+|++|+..+-.+|..+|.+|-++++.
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhc
Confidence 888999999999999999999999999999999986
No 479
>PLN02417 dihydrodipicolinate synthase
Probab=94.16 E-value=0.23 Score=48.48 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhcc--CccEEEEECCC-CCChHHHH
Q 014581 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA--TVPVWAKMTPN-ITDITEPA 236 (422)
Q Consensus 160 ~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~--~iPv~vKl~~~-~~~~~~~a 236 (422)
.+.+.+.+.++++.+.|+++|-++-+. |....-+.+.-.++++.+.+.+ ++||++=+..+ ..+..+.+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~Gst---------GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a 89 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTT---------GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHAT 89 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccC---------cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHH
Confidence 466788889999888999999887431 2222234455555666555543 58999877653 34578899
Q ss_pred HHHHHcCCCEEEEecCC
Q 014581 237 RVALRSGSEGVSAINTI 253 (422)
Q Consensus 237 ~~l~~aGadgi~v~n~~ 253 (422)
+.+.++|+|++.++...
T Consensus 90 ~~a~~~Gadav~~~~P~ 106 (280)
T PLN02417 90 EQGFAVGMHAALHINPY 106 (280)
T ss_pred HHHHHcCCCEEEEcCCc
Confidence 99999999999988654
No 480
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.13 E-value=0.48 Score=46.51 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=68.7
Q ss_pred CCCcccccccccccccCCChHH---HHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCC
Q 014581 113 GSAKGQIIGWENIELISDRPLE---TMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHG 189 (422)
Q Consensus 113 ~~a~~~~~Gl~n~~~~s~~~~e---~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~ 189 (422)
|++..+++||...=++-+..+. .+.+.++++|+..|..++.+-+- +.++..+ +.++|+|.|.++ |
T Consensus 160 GGG~~HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~---tl~ea~e----al~~gaDiI~LD----n- 227 (289)
T PRK07896 160 GGGVNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVD---SLEQLDE----VLAEGAELVLLD----N- 227 (289)
T ss_pred CCCccccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcC---CHHHHHH----HHHcCCCEEEeC----C-
Confidence 4455667776543222221121 23456777887777788887773 4444333 235799999987 2
Q ss_pred CCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCC
Q 014581 190 MPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTI 253 (422)
Q Consensus 190 ~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~ 253 (422)
-+++.+++.++.+++.. ..+.+=.+.+++ .+-+....+.|+|.|++..-+
T Consensus 228 -----------m~~e~vk~av~~~~~~~-~~v~ieaSGGI~--~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 228 -----------FPVWQTQEAVQRRDARA-PTVLLESSGGLT--LDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred -----------CCHHHHHHHHHHHhccC-CCEEEEEECCCC--HHHHHHHHhcCCCEEEeChhh
Confidence 23567888887665442 223344455553 345666778999999876544
No 481
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.11 E-value=0.94 Score=44.81 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=47.3
Q ss_pred Cce-EEEecCCCCHHHHHHHH----HhCC--CEEEEhhHHHhhhhHHH-HHHHHHHHHHHHHcCCCCHHHhh
Q 014581 307 DYS-LSGIGGVETGGDAAEFI----LLGA--NTVQVCTGVMMHGYGLV-KRLCEELKDFMKMHNFSSIEDFR 370 (422)
Q Consensus 307 ~ip-IIa~GGI~s~~da~~~l----~aGA--d~V~vgtall~~Gp~~i-~~i~~~l~~~m~~~G~~si~d~~ 370 (422)
++| |+.++|+. .+...+.+ .+|| ++|.+||++..++...+ ..=.+..++||...|.++|+++-
T Consensus 240 ~~P~i~LSaGV~-~~~F~~~l~~A~~aGa~fsGvL~GRAtW~~~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln 310 (324)
T PRK12399 240 HLPYIYLSAGVS-AELFQETLVFAHEAGAKFNGVLCGRATWAGSVKVYIEQGEAAAREWLRTEGFENIDELN 310 (324)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHHcCCCcceEEeehhhhHhhhhhhhcCCHHHHHHHHHHHhHHHHHHHH
Confidence 676 78888886 44444443 4699 79999999998865543 33356688999999999998874
No 482
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=94.10 E-value=0.37 Score=47.62 Aligned_cols=102 Identities=8% Similarity=0.056 Sum_probs=61.5
Q ss_pred HHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHH------cCCCEEEEecCCcccccccccCCCCCCCCCCCCccCC
Q 014581 206 LEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALR------SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGG 278 (422)
Q Consensus 206 v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~------aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG 278 (422)
+.+.++.+|+.. ..+...|+-..+++.. -++.+.+ +|+|.|.+=|. .+.++..+
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~tle-ea~ea~~~~~~~~agaDiImLDnm-----~~~~~~~~------------- 246 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETRTLE-EVKEVLEYLSDTKTSLTRVMLDNM-----VVPLENGD------------- 246 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEECCHH-HHHHHHHhcccccCCCCEEEeCCC-----cccccccC-------------
Confidence 344555555521 1222334444444544 4556667 99998877663 11111110
Q ss_pred CCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 279 YSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 279 ~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
.+.+.+++..+.+.+ ..++.++|||. .+.+.++..+|+|.+.+|....
T Consensus 247 --------~~~e~l~~av~~~~~-----~~~lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 247 --------VDVSMLKEAVELING-----RFETEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred --------CCHHHHHHHHHhhCC-----CceEEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 112444555554433 67899999995 9999999999999999997543
No 483
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.08 E-value=0.58 Score=45.68 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcc-CccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 205 LLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 205 ~v~~iv~~vr~~~-~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
.+.+.++.+|+.. ..+|.|=+ . ..+-++.+.++|+|.|.+.|....
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv----~-tleea~ea~~~GaDiI~lDn~~~e---------------------------- 220 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEA----D-TIEQALTVLQASPDILQLDKFTPQ---------------------------- 220 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC----C-CHHHHHHHHHcCcCEEEECCCCHH----------------------------
Confidence 4667777777653 34565543 2 345677788999999987764321
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhH
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTG 338 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgta 338 (422)
...+.+..+++. . .++.|.++|||. .+.+.++..+|+|.+.+|+.
T Consensus 221 ---~l~~~v~~l~~~-~-----~~~~leasGGI~-~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 221 ---QLHHLHERLKFF-D-----HIPTLAAAGGIN-PENIADYIEAGIDLFITSAP 265 (277)
T ss_pred ---HHHHHHHHHhcc-C-----CCEEEEEECCCC-HHHHHHHHhcCCCEEEeCcc
Confidence 011233333221 1 278899999995 99999999999999988875
No 484
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.08 E-value=0.24 Score=46.19 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCce
Q 014581 230 TDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYS 309 (422)
Q Consensus 230 ~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ip 309 (422)
++..++++++.+.|+..+-+..+. |.+.+.++.+++.++ +--
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt~~~--------------------------------~~~~~~i~~l~~~~~------~~~ 63 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIPLNS--------------------------------PDPFDSIAALVKALG------DRA 63 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC--------------------------------ccHHHHHHHHHHHcC------CCc
Confidence 457889999999999988777542 123456677777653 224
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 310 LSGIGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 310 IIa~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
+||.|.|.+.+++..++.+||+++..+.
T Consensus 64 ~iGaGTV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 64 LIGAGTVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred EEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence 8999999999999999999999999874
No 485
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.07 E-value=1.5 Score=42.56 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhhCCCCeEEEEeCC--CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHH
Q 014581 132 PLETMLKEFKQLKALYPDKILIASIME--EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEV 209 (422)
Q Consensus 132 ~~e~~l~~i~~~k~~~~~~pvi~si~~--~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~i 209 (422)
.++...+.++.+|+. +..+.+++.. .++++.+.++++++.++|+|.|-+- -+ .| .-.|+.+.++
T Consensus 107 ~~~~~~~~i~~ak~~--G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~----DT-----~G---~~~P~~v~~l 172 (266)
T cd07944 107 EFDEALPLIKAIKEK--GYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV----DS-----FG---SMYPEDIKRI 172 (266)
T ss_pred cHHHHHHHHHHHHHC--CCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe----cC-----CC---CCCHHHHHHH
Confidence 467777778888764 5567777642 3578889999999999999987542 11 12 2578999999
Q ss_pred HHHHhhccC--ccEEEEECCCCCChHHHHHHHHHcCCCEEEE
Q 014581 210 CGWINAKAT--VPVWAKMTPNITDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 210 v~~vr~~~~--iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v 249 (422)
++.+++..+ +||.+=.--+..-...-+..+.++|++.|..
T Consensus 173 v~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~ 214 (266)
T cd07944 173 ISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDA 214 (266)
T ss_pred HHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEE
Confidence 999998876 8888765544433344456678899987743
No 486
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=94.04 E-value=0.18 Score=50.78 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=56.7
Q ss_pred HHHHHHHhhC-CCCeEEEEeCC------CCCHHHHHHHHHHHHHhCCCEEEEccC------CCCCCCccccccccccChh
Q 014581 138 KEFKQLKALY-PDKILIASIME------EYNKAAWEELIDRVEETGIDAIEVNFS------CPHGMPERKMGAAVGQDCR 204 (422)
Q Consensus 138 ~~i~~~k~~~-~~~pvi~si~~------~~~~~~~~~~a~~~~~aGaD~iElN~s------cP~~~~~~~~G~~l~~~~~ 204 (422)
+.++.+++.. ++.||.+-+.. +.+.++..++++.+++.|.|.+++..+ -|... .. ....+.
T Consensus 204 Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~----~~~~~~ 277 (341)
T PF00724_consen 204 EIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPS--PP----FDFEPG 277 (341)
T ss_dssp HHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSST--TT----TTTTTT
T ss_pred HHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccc--cc----cccccc
Confidence 3455555543 36788988752 123456677888888888888875321 12211 00 011111
Q ss_pred HHHHHHHHHhhccCccEEEEECCCCCChHHHHHHHHHcC-CCEEEE
Q 014581 205 LLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSG-SEGVSA 249 (422)
Q Consensus 205 ~v~~iv~~vr~~~~iPv~vKl~~~~~~~~~~a~~l~~aG-adgi~v 249 (422)
......+.+|+.+++||++ ...+.+ .+.+..+.+.| +|.|.+
T Consensus 278 ~~~~~a~~ik~~~~~pvi~--~G~i~~-~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 278 YNLDLAEAIKKAVKIPVIG--VGGIRT-PEQAEKALEEGKADLVAM 320 (341)
T ss_dssp TTHHHHHHHHHHHSSEEEE--ESSTTH-HHHHHHHHHTTSTSEEEE
T ss_pred hhhhhhhhhhhhcCceEEE--Eeeecc-hhhhHHHHhcCCceEeec
Confidence 2224456677777999875 344444 44455555544 887643
No 487
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=94.02 E-value=1.7 Score=41.05 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=67.2
Q ss_pred HHHHHHhhCCCCeEEEEeCC--CCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhc
Q 014581 139 EFKQLKALYPDKILIASIME--EYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAK 216 (422)
Q Consensus 139 ~i~~~k~~~~~~pvi~si~~--~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~ 216 (422)
.++.+|+. +..+.++... ..+++.+.++++++.++|+|.|-|- -+ .| .-.|+.+.++++.+++.
T Consensus 113 ~v~~ak~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~----Dt-----~G---~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 113 AVKYAKEL--GYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA----DT-----VG---IMTPEDVAELVRALREA 178 (237)
T ss_dssp HHHHHHHT--TSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE----ET-----TS----S-HHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee----Cc-----cC---CcCHHHHHHHHHHHHHh
Confidence 34455553 5667777642 2478899999999999999998764 11 11 14788999999999998
Q ss_pred cC-ccEEEEECCCCCChHHHHHHHHHcCCCEEEE
Q 014581 217 AT-VPVWAKMTPNITDITEPARVALRSGSEGVSA 249 (422)
Q Consensus 217 ~~-iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v 249 (422)
.+ +||.+-..-+..-...-+-.+.++|++.|..
T Consensus 179 ~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~ 212 (237)
T PF00682_consen 179 LPDIPLGFHAHNDLGLAVANALAALEAGADRIDG 212 (237)
T ss_dssp STTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEE
T ss_pred ccCCeEEEEecCCccchhHHHHHHHHcCCCEEEc
Confidence 86 8999987766554455566788999999754
No 488
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=94.02 E-value=0.97 Score=46.59 Aligned_cols=170 Identities=13% Similarity=0.204 Sum_probs=95.4
Q ss_pred HHHHHhhCCCCeEEEEeCC---CCCHHHHHHHHHHHHHhCCCEEEEc--cCCCCCCCccccccccccChhHHHHHHHHHh
Q 014581 140 FKQLKALYPDKILIASIME---EYNKAAWEELIDRVEETGIDAIEVN--FSCPHGMPERKMGAAVGQDCRLLEEVCGWIN 214 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~---~~~~~~~~~~a~~~~~aGaD~iElN--~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr 214 (422)
++++... .++|++.+|.. |.+++++.+++..+...|+|.|-=+ +..+.. .-+..+...+.+.++...
T Consensus 122 ~R~~lgv-~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~-------~p~~~Rv~~~~~a~~~a~ 193 (412)
T cd08213 122 VREILGI-KDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPF-------NRFEERAKESLKARDKAE 193 (412)
T ss_pred HHHHhCC-CCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCC-------CCHHHHHHHHHHHHHHHH
Confidence 4444333 38999998753 5689999999998888899988532 111110 011223334444444444
Q ss_pred hccCcc--EEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHH
Q 014581 215 AKATVP--VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKV 292 (422)
Q Consensus 215 ~~~~iP--v~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v 292 (422)
+.+... ..+=++....++.+-++.+.+.|++.+. +|-. ..|+ ..+
T Consensus 194 ~eTG~~~~y~~NiT~~~~em~~ra~~a~e~G~~~~m-v~~~----------------------~~G~----------~~l 240 (412)
T cd08213 194 AETGERKAYLANITAPVREMERRAELVADLGGKYVM-IDVV----------------------VAGW----------SAL 240 (412)
T ss_pred HhhCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEE-eecc----------------------ccCh----------HHH
Confidence 455333 3444555444567778889999998764 3321 1233 223
Q ss_pred HHHHHHhhccCCCCCceEEE------------ecCCCCHHHHHHHH-HhCCCEEEEhhHHHh--hhhHHHHHHHHHHH
Q 014581 293 MSIAKMMKSEFNDKDYSLSG------------IGGVETGGDAAEFI-LLGANTVQVCTGVMM--HGYGLVKRLCEELK 355 (422)
Q Consensus 293 ~~i~~~~~~~~~~~~ipIIa------------~GGI~s~~da~~~l-~aGAd~V~vgtall~--~Gp~~i~~i~~~l~ 355 (422)
..+++..++ .++||.+ .=||.. .-..|+. ++|||.+.++|..=+ ...+-..++.+.+.
T Consensus 241 ~~l~~~~~~----~~l~ihaHra~~ga~~r~~~~Gis~-~~l~kl~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~ 313 (412)
T cd08213 241 QYLRDLAED----YGLAIHAHRAMHAAFTRNPRHGISM-LVLAKLYRLIGVDQLHIGTAVGKMEGDKEEVLRIADILR 313 (412)
T ss_pred HHHHHhccc----cCeEEEECCCcceecccCCcCcCcH-HHHHHHHHHcCCCccccCCccCCcCCCHHHHHHHHHHHH
Confidence 345543321 1577776 136654 4444554 589999999987322 11233445555554
No 489
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=94.02 E-value=1.5 Score=44.54 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=78.7
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC--ChHHHHHHHHHcC
Q 014581 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT--DITEPARVALRSG 243 (422)
Q Consensus 166 ~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~--~~~~~a~~l~~aG 243 (422)
..+|+.+.++|.-++-=.+++ ..+++|.++ .+-|.+..+-..-+ -..++.++++++|
T Consensus 90 ~a~AraA~~~gi~~~lSt~ss-----------------~slEeva~~----~~~~~wfQlY~~~Dr~~~~~li~RA~~aG 148 (367)
T PLN02493 90 YATARAASAAGTIMTLSSWAT-----------------SSVEEVAST----GPGIRFFQLYVYKNRNVVEQLVRRAERAG 148 (367)
T ss_pred HHHHHHHHHcCCCeeecCccc-----------------CCHHHHHhc----CCCCcEEEEeecCCHHHHHHHHHHHHHcC
Confidence 356777777786665322211 114444332 24577877654222 2578899999999
Q ss_pred CCEEEEecCCccc--ccccccCCCCCCC---CCCC--------C--ccCCC----CCCCcchhHHHHHHHHHHHhhccCC
Q 014581 244 SEGVSAINTIMSV--MGIDLKTLRPEPC---VEGY--------S--TPGGY----SCKAVHPIALGKVMSIAKMMKSEFN 304 (422)
Q Consensus 244 adgi~v~n~~~~~--~~id~e~~~p~~~---~~~~--------~--~~gG~----sG~~i~p~al~~v~~i~~~~~~~~~ 304 (422)
+.+|+++--.+.. -.-|..+.-..|. .... . ...+. .+..-...+++-|..+++..
T Consensus 149 ~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~----- 223 (367)
T PLN02493 149 FKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT----- 223 (367)
T ss_pred CCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc-----
Confidence 9999886321110 0001111000000 0000 0 00000 00001234677778888765
Q ss_pred CCCceEEEecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 305 DKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 305 ~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
++|||. .||.+++|+.+++.+|+|+|.|..
T Consensus 224 --~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 224 --KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred --CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 788775 577899999999999999999874
No 490
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.97 E-value=6.8 Score=38.43 Aligned_cols=164 Identities=14% Similarity=0.173 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHH
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGW 212 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~ 212 (422)
.+.+...++.+.+++ ..||.+.+--+.+.+. ++++.++|+.-|-++-|.- .++.+.+..+++++.
T Consensus 59 ~~~~~~~~~~~A~~~-~VPValHLDH~~~~e~----i~~ai~~GftSVM~DgS~l----------p~eeNi~~T~~vv~~ 123 (284)
T PRK12857 59 IEYISAMVRTAAEKA-SVPVALHLDHGTDFEQ----VMKCIRNGFTSVMIDGSKL----------PLEENIALTKKVVEI 123 (284)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEECCCCCCHHH----HHHHHHcCCCeEEEeCCCC----------CHHHHHHHHHHHHHH
Confidence 344444455555544 7899999964444433 3344456999988886531 134556667777776
Q ss_pred HhhccCccEEEEE---------------CCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccC
Q 014581 213 INAKATVPVWAKM---------------TPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277 (422)
Q Consensus 213 vr~~~~iPv~vKl---------------~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~g 277 (422)
.+.. +++|=.=| ...++++.+..+.+.+.|+|.+-+.-.+ ..|
T Consensus 124 Ah~~-gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt---------------------~HG 181 (284)
T PRK12857 124 AHAV-GVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGT---------------------AHG 181 (284)
T ss_pred HHHc-CCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCc---------------------ccc
Confidence 5532 33321111 0114566666667778899998665322 123
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCC-HHHHHHHHHhCCCEEEEhhHHHhh
Q 014581 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVET-GGDAAEFILLGANTVQVCTGVMMH 342 (422)
Q Consensus 278 G~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s-~~da~~~l~aGAd~V~vgtall~~ 342 (422)
-|.|++ .+.++.++++++.+ ++|++.=||=.. .+++.+++..|..=|=++|.+...
T Consensus 182 ~y~~~p--~Ld~~~L~~i~~~~-------~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 238 (284)
T PRK12857 182 PYKGEP--KLDFDRLAKIKELV-------NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREA 238 (284)
T ss_pred ccCCCC--cCCHHHHHHHHHHh-------CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 333321 24467778888876 677776665433 567888999999999999988754
No 491
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.96 E-value=0.71 Score=45.13 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=59.5
Q ss_pred HHHHHHHHhhccC--ccEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCC
Q 014581 206 LEEVCGWINAKAT--VPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKA 283 (422)
Q Consensus 206 v~~iv~~vr~~~~--iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~ 283 (422)
+.+.++.+|+... ++|.|= +++ .+-+..+.++|+|.|-+=|..
T Consensus 180 i~~ai~~~r~~~~~~~kIeVE----v~t-leea~ea~~~gaDiI~LDn~s------------------------------ 224 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVE----VDT-LDQLEEALELGVDAVLLDNMT------------------------------ 224 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEE----eCC-HHHHHHHHHcCCCEEEeCCCC------------------------------
Confidence 4455555665542 445553 333 345667789999988655522
Q ss_pred cchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHHHHHHHHHhCCCEEEEhhHHH
Q 014581 284 VHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 284 i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~da~~~l~aGAd~V~vgtall 340 (422)
.+.++++.+.+.+ ..++.++|||. .+.+.++..+|+|.+.+|+...
T Consensus 225 -----~e~l~~av~~~~~-----~~~leaSGGI~-~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 225 -----PDTLREAVAIVAG-----RAITEASGRIT-PETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred -----HHHHHHHHHHhCC-----CceEEEECCCC-HHHHHHHHhcCCCEEEeChhhc
Confidence 1234444444432 67899999995 9999999999999999998543
No 492
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=93.96 E-value=0.6 Score=42.18 Aligned_cols=153 Identities=20% Similarity=0.269 Sum_probs=83.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC
Q 014581 149 DKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN 228 (422)
Q Consensus 149 ~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~ 228 (422)
..=+|.-+. +++ -|+.++++||-++-.-=--|.. .....|-+=+.||..+++|.++| ++||+.|.+-.
T Consensus 14 kGGVIMDV~---n~e----QAkIAE~AGA~AVMaLervPad-iR~~GGVaRMsDP~~I~eI~~aV----sIPVMAK~RIG 81 (208)
T PF01680_consen 14 KGGVIMDVT---NAE----QAKIAEEAGAVAVMALERVPAD-IRAAGGVARMSDPKMIKEIMDAV----SIPVMAKVRIG 81 (208)
T ss_dssp TTEEEEEES---SHH----HHHHHHHHT-SEEEE-SS-HHH-HHHTTS---S--HHHHHHHHHH-----SSEEEEEEETT
T ss_pred cCCeEEEec---CHH----HHHHHHHhCCeEEEEeccCCHh-HHhcCCccccCCHHHHHHHHHhe----Eeceeeccccc
Confidence 345777775 344 3677888998776432122221 11233555567998888877766 99999999854
Q ss_pred CCChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCc
Q 014581 229 ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDY 308 (422)
Q Consensus 229 ~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~i 308 (422)
++.+ |+.|++.|+|+|.=+.-+. |. +-. .-+.+.. | ++
T Consensus 82 --HfvE-AqiLealgVD~IDESEVLT-----------pA----------D~~------------~HI~K~~---F---~v 119 (208)
T PF01680_consen 82 --HFVE-AQILEALGVDYIDESEVLT-----------PA----------DEE------------NHIDKHN---F---KV 119 (208)
T ss_dssp ---HHH-HHHHHHTT-SEEEEETTS-------------S-----------SS----------------GGG-------SS
T ss_pred --eeeh-hhhHHHhCCceeccccccc-----------cc----------ccc------------ccccchh---C---CC
Confidence 5554 7889999999996443221 10 000 0022221 1 45
Q ss_pred eEEEecCCCCHHHHHHHHHhCCCEEEEh----hHHHhhhhHHHHHHHHHHHHH
Q 014581 309 SLSGIGGVETGGDAAEFILLGANTVQVC----TGVMMHGYGLVKRLCEELKDF 357 (422)
Q Consensus 309 pIIa~GGI~s~~da~~~l~aGAd~V~vg----tall~~Gp~~i~~i~~~l~~~ 357 (422)
|. +-|.++.-++++-+.-||..+-.- |+-+.+-...++.+..+++..
T Consensus 120 PF--VcGarnLGEALRRI~EGAaMIRtKGEaGTGnvveAVrH~R~i~~eI~~l 170 (208)
T PF01680_consen 120 PF--VCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRTINGEIRRL 170 (208)
T ss_dssp -E--EEEESSHHHHHHHHHTT-SEEEEETTTTST-THHHHHHHHHHHHHHHHH
T ss_pred Ce--EecCCCHHHHHhhHHhhhhhhcccCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 54 346678888999999999887654 555555445566666665533
No 493
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.93 E-value=1.3 Score=40.90 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhCCCCeEEEEeCCC-CCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCcccccc--------cccc--Chh
Q 014581 136 MLKEFKQLKALYPDKILIASIMEE-YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGA--------AVGQ--DCR 204 (422)
Q Consensus 136 ~l~~i~~~k~~~~~~pvi~si~~~-~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~--------~l~~--~~~ 204 (422)
+.+.+.++|++. ...++--+.+| .+.++-..+.+-++.-|+|.|||.+ |.+++..+ |- ++.+ ...
T Consensus 5 l~~TFa~aK~en-knaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGv--PfSDp~AD-GPtIq~~n~~aL~ng~tl~ 80 (268)
T KOG4175|consen 5 LSETFARAKSEN-KNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGV--PFSDPLAD-GPTIQAANRRALLNGTTLN 80 (268)
T ss_pred HHHHHHHHHhcC-CceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecC--ccCccccC-CchhhhhHHHHHHcCCcHH
Confidence 344566777753 22344444433 3566777778888888999999985 44332221 11 1111 223
Q ss_pred HHHHHHHHHhhc-cCccEEEEEC--CCCC-ChHHHHHHHHHcCCCEEEEec
Q 014581 205 LLEEVCGWINAK-ATVPVWAKMT--PNIT-DITEPARVALRSGSEGVSAIN 251 (422)
Q Consensus 205 ~v~~iv~~vr~~-~~iPv~vKl~--~~~~-~~~~~a~~l~~aGadgi~v~n 251 (422)
.+-+.++..+.. +.+||++--- |-+. ...+..+.++++|+.|+.+..
T Consensus 81 ~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivD 131 (268)
T KOG4175|consen 81 SIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVD 131 (268)
T ss_pred HHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEecc
Confidence 344444444444 5788876421 1111 246778889999999997764
No 494
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.93 E-value=0.56 Score=48.51 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE-ccCC-------------CCCCCccccccc
Q 014581 133 LETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEV-NFSC-------------PHGMPERKMGAA 198 (422)
Q Consensus 133 ~e~~l~~i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iEl-N~sc-------------P~~~~~~~~G~~ 198 (422)
.+.+.+.++.+++.. +.||++-+.. +..++.++++.++++|+|+|.+ |-.. |........|+.
T Consensus 153 ~~~~~~i~~~v~~~~-~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~ 229 (420)
T PRK08318 153 PELVEMYTRWVKRGS-RLPVIVKLTP--NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGY 229 (420)
T ss_pred HHHHHHHHHHHHhcc-CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccc
Confidence 455566666776654 7899999963 3445788999999999999984 3211 110000111111
Q ss_pred ccc-ChhHHHHHHHHHhhcc---CccEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 199 VGQ-DCRLLEEVCGWINAKA---TVPVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 199 l~~-~~~~v~~iv~~vr~~~---~iPv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
-+. ......+.+..+++.+ ++||+. ..++.+.....+.+ .+||++|-+.
T Consensus 230 SG~a~~p~~l~~v~~~~~~~~~~~ipIig--~GGI~s~~da~e~i-~aGA~~Vqi~ 282 (420)
T PRK08318 230 CGPAVKPIALNMVAEIARDPETRGLPISG--IGGIETWRDAAEFI-LLGAGTVQVC 282 (420)
T ss_pred cchhhhHHHHHHHHHHHhccccCCCCEEe--ecCcCCHHHHHHHH-HhCCChheee
Confidence 111 1123456666777765 789886 46676666655555 5999998654
No 495
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.90 E-value=1.6 Score=38.94 Aligned_cols=134 Identities=19% Similarity=0.121 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCCCC-C-hHHHHHHHH
Q 014581 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNIT-D-ITEPARVAL 240 (422)
Q Consensus 163 ~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~~~-~-~~~~a~~l~ 240 (422)
+...+.++.+.+.|++++++-..-++...... ..+ +.+..+++..++|+++.+...-. + ....++.+.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 81 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAET------DDK----EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAAR 81 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCC------ccc----cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHH
Confidence 46677888888889999998753222110000 001 23444445568999988754321 1 122257889
Q ss_pred HcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhccCCCCCceEEEecCCCCHH
Q 014581 241 RSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGG 320 (422)
Q Consensus 241 ~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI~s~~ 320 (422)
++|+|+|.++..-.. . .....+.+..+++.++ +++|+..-......
T Consensus 82 ~~g~d~v~l~~~~~~---------------------~-------~~~~~~~~~~i~~~~~------~~~v~~~~~~~~~~ 127 (200)
T cd04722 82 AAGADGVEIHGAVGY---------------------L-------AREDLELIRELREAVP------DVKVVVKLSPTGEL 127 (200)
T ss_pred HcCCCEEEEeccCCc---------------------H-------HHHHHHHHHHHHHhcC------CceEEEEECCCCcc
Confidence 999999988754210 0 0112355666666552 56666654443332
Q ss_pred HHHHHHHhCCCEEEEhhHHH
Q 014581 321 DAAEFILLGANTVQVCTGVM 340 (422)
Q Consensus 321 da~~~l~aGAd~V~vgtall 340 (422)
+...+...|++.+.+.....
T Consensus 128 ~~~~~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 128 AAAAAEEAGVDEVGLGNGGG 147 (200)
T ss_pred chhhHHHcCCCEEEEcCCcC
Confidence 22224678999999976543
No 496
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=93.90 E-value=3.4 Score=38.64 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=32.0
Q ss_pred CceEEEecCCCCHHHHHHHHHhCC-CEEEEhhHHHhh
Q 014581 307 DYSLSGIGGVETGGDAAEFILLGA-NTVQVCTGVMMH 342 (422)
Q Consensus 307 ~ipIIa~GGI~s~~da~~~l~aGA-d~V~vgtall~~ 342 (422)
..|++..||+. ++++.+++..+. .+|-+.|++-.+
T Consensus 154 ~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~ 189 (208)
T COG0135 154 SKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESS 189 (208)
T ss_pred cCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccC
Confidence 67899999995 999999999887 999999999876
No 497
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=93.90 E-value=2.8 Score=41.88 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=84.4
Q ss_pred CCeEEEEeCCCCCH--HH-HHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccC-ccEEEE
Q 014581 149 DKILIASIMEEYNK--AA-WEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKAT-VPVWAK 224 (422)
Q Consensus 149 ~~pvi~si~~~~~~--~~-~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~-iPv~vK 224 (422)
+.||+++=|.+-+. .+ -.++|+.+.++|.-. .++.- + ....+++.. +-++.+|+... .|+++-
T Consensus 52 ~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~---~~Gs~--------~-~~~~~~e~~-~~~~~vr~~~~~~p~~~N 118 (326)
T cd02811 52 SAPLLISAMTGGSEKAKEINRNLAEAAEELGIAM---GVGSQ--------R-AALEDPELA-ESFTVVREAPPNGPLIAN 118 (326)
T ss_pred cCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCe---EecCc--------h-hhccChhhh-hHHHHHHHhCCCceEEee
Confidence 56888765533332 12 245666666665321 11110 0 112345544 55666777664 998887
Q ss_pred ECCCCC---ChHHHHHHHHHcCCCEEEEecCCcccccccccCCCCCCCCCCCCccCCCCCCCcchhHHHHHHHHHHHhhc
Q 014581 225 MTPNIT---DITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKS 301 (422)
Q Consensus 225 l~~~~~---~~~~~a~~l~~aGadgi~v~n~~~~~~~id~e~~~p~~~~~~~~~~gG~sG~~i~p~al~~v~~i~~~~~~ 301 (422)
+..... +..++.+.....++|++.++-...+ +...| .+. .-....++.|+.+++.+
T Consensus 119 l~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q------~~~~~----------~~~---~df~~~~~~i~~l~~~~-- 177 (326)
T cd02811 119 LGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQ------EAVQP----------EGD---RDFRGWLERIEELVKAL-- 177 (326)
T ss_pred cCccccCCCCHHHHHHHHHhcCCCcEEEeCcchH------hhcCC----------CCC---cCHHHHHHHHHHHHHhc--
Confidence 654221 4566677777788999877521111 00011 111 00112235566666655
Q ss_pred cCCCCCceEEE--ecCCCCHHHHHHHHHhCCCEEEEhh
Q 014581 302 EFNDKDYSLSG--IGGVETGGDAAEFILLGANTVQVCT 337 (422)
Q Consensus 302 ~~~~~~ipIIa--~GGI~s~~da~~~l~aGAd~V~vgt 337 (422)
++||+. +|--.+.+++..+..+|+|+|-+..
T Consensus 178 -----~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -----SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -----CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 788887 3444789999999999999999864
No 498
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.88 E-value=0.49 Score=46.50 Aligned_cols=162 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred cCCCCCCCHHHHHHHHHcCCcEEEecccccCcccCCCCCCeeEeecCCCCCCCcccccccccccccCCChHHHH---HHH
Q 014581 63 GSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETM---LKE 139 (422)
Q Consensus 63 AAg~~~~~~~~~~~~~~~G~Gavv~ktv~~~~~~~~~~~pr~~~~~~~~~~~a~~~~~Gl~n~~~~s~~~~e~~---l~~ 139 (422)
+||.-|.+.+++.++ .|.+..++.| +..-|.-|......-..|++..+++||...=++-+..+..+ .+.
T Consensus 127 ~SGIAT~T~~~v~~~--~~~~~~i~~T------RKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~iLikdNHi~~~G~i~~a 198 (296)
T PRK09016 127 LSGVATEVRRYVELL--AGTNTQLLDT------RKTLPGLRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSIRQA 198 (296)
T ss_pred HHHHHHHHHHHHHHh--cCCCeEEEec------CCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHhCcHHHH
Q ss_pred HHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCc
Q 014581 140 FKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219 (422)
Q Consensus 140 i~~~k~~~~~~pvi~si~~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~i 219 (422)
++++|+..|..++.+-+- +.++ ++.+.++|+|.|.|+ --+++.+++.++.++.
T Consensus 199 v~~~r~~~~~~kIeVEv~---slee----a~ea~~~gaDiI~LD----------------n~s~e~~~~av~~~~~---- 251 (296)
T PRK09016 199 VEKAFWLHPDVPVEVEVE---NLDE----LDQALKAGADIIMLD----------------NFTTEQMREAVKRTNG---- 251 (296)
T ss_pred HHHHHHhCCCCCEEEEeC---CHHH----HHHHHHcCCCEEEeC----------------CCChHHHHHHHHhhcC----
Q ss_pred cEEEEECCCCCChHHHHHHHHHcCCCEEEEecCCcccccccc
Q 014581 220 PVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDL 261 (422)
Q Consensus 220 Pv~vKl~~~~~~~~~~a~~l~~aGadgi~v~n~~~~~~~id~ 261 (422)
.+.+=.+.+++ .+-+....+.|+|.|++..-+.+.+.+|+
T Consensus 252 ~~~ieaSGGI~--~~ni~~yA~tGVD~Is~galthsa~~lD~ 291 (296)
T PRK09016 252 RALLEVSGNVT--LETLREFAETGVDFISVGALTKHVQALDL 291 (296)
T ss_pred CeEEEEECCCC--HHHHHHHHhcCCCEEEeCccccCCCccce
No 499
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=93.85 E-value=3.5 Score=41.11 Aligned_cols=176 Identities=18% Similarity=0.195 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHHHHhhccCccEEEEECCC------------
Q 014581 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPN------------ 228 (422)
Q Consensus 161 ~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~~vr~~~~iPv~vKl~~~------------ 228 (422)
++.+|.. +..++.|+|+|.||+..... .. -...++.+.++++.|.+.+++|+++=.+.+
T Consensus 76 ~p~~~Ak--~q~~~~GAd~Idl~~~s~dp--~~-----~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaal 146 (319)
T PRK04452 76 DPAAWAK--KCVEEYGADMITLHLISTDP--NG-----KDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVA 146 (319)
T ss_pred CHHHHHH--HHHHHhCCCEEEEECCCCCc--cc-----ccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHH
Confidence 5666554 33447899999999632211 00 012345566777777777788886654421
Q ss_pred --------------CCChHHHHHHHHHcCCCEEEEe-cCC---------cccccccccCC--CCCCCCCCCCccCCCCCC
Q 014581 229 --------------ITDITEPARVALRSGSEGVSAI-NTI---------MSVMGIDLKTL--RPEPCVEGYSTPGGYSCK 282 (422)
Q Consensus 229 --------------~~~~~~~a~~l~~aGadgi~v~-n~~---------~~~~~id~e~~--~p~~~~~~~~~~gG~sG~ 282 (422)
.++..+++..+.+.|+.-+... .-. ....+++.+.. -|.. ..-|+.
T Consensus 147 e~~~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviDP~~------~~lg~g-- 218 (319)
T PRK04452 147 EAAEGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGVPRERIVMDPTT------GALGYG-- 218 (319)
T ss_pred HHhCCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEeCCc------ccccCC--
Confidence 0124556666777777544433 000 00011111110 0100 001111
Q ss_pred CcchhHHHHHHHHHHHhhccCCCCCceEEEecCC-----CCH--------------------H--HHHHHHHhCCCEEEE
Q 014581 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGV-----ETG--------------------G--DAAEFILLGANTVQV 335 (422)
Q Consensus 283 ~i~p~al~~v~~i~~~~~~~~~~~~ipIIa~GGI-----~s~--------------------~--da~~~l~aGAd~V~v 335 (422)
...++..+.++|...-.......+|+|..=+- ... | .+.-++.+|||.+.+
T Consensus 219 --~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ga~i~vm 296 (319)
T PRK04452 219 --IEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLAGADIFMM 296 (319)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHhcCcEEEE
Confidence 13455566666654211222347999977763 211 1 133345689998886
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHc
Q 014581 336 CTGVMMHGYGLVKRLCEELKDFMKMH 361 (422)
Q Consensus 336 gtall~~Gp~~i~~i~~~l~~~m~~~ 361 (422)
- + |.-++.+++-++.+|...
T Consensus 297 ~-----h-p~s~~~~~~~~~~l~~~~ 316 (319)
T PRK04452 297 R-----H-PESVKTLKEIIDTLMGKN 316 (319)
T ss_pred e-----C-HHHHHHHHHHHHHHhccc
Confidence 4 3 777877777777666544
No 500
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.82 E-value=1.9 Score=41.55 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeC--CCCCHHHHHHHHHHHHHhCCCEEEEccCCCCCCCccccccccccChhHHHHHHH
Q 014581 134 ETMLKEFKQLKALYPDKILIASIM--EEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211 (422)
Q Consensus 134 e~~l~~i~~~k~~~~~~pvi~si~--~~~~~~~~~~~a~~~~~aGaD~iElN~scP~~~~~~~~G~~l~~~~~~v~~iv~ 211 (422)
+...+.++.+|+. +..+.+++. ...+++.+.++++++.++|+|.|-|- -+ .| .-.|+.+.++++
T Consensus 112 ~~~~~~i~~ak~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~----DT-----~G---~~~P~~v~~lv~ 177 (263)
T cd07943 112 DVSEQHIGAARKL--GMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT----DS-----AG---AMLPDDVRERVR 177 (263)
T ss_pred HHHHHHHHHHHHC--CCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc----CC-----CC---CcCHHHHHHHHH
Confidence 4455566667664 556777763 23578899999999999999987541 22 12 247889999999
Q ss_pred HHhhccCc-cEEEEECCCCCChHHHHHHHHHcCCCEEEEe
Q 014581 212 WINAKATV-PVWAKMTPNITDITEPARVALRSGSEGVSAI 250 (422)
Q Consensus 212 ~vr~~~~i-Pv~vKl~~~~~~~~~~a~~l~~aGadgi~v~ 250 (422)
.+|+..+. |+.+=.--+..-...-+.++.++|++.|..+
T Consensus 178 ~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s 217 (263)
T cd07943 178 ALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGS 217 (263)
T ss_pred HHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEee
Confidence 99998765 7776554444333444566778999987543
Done!