RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014581
(422 letters)
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 341 bits (877), Expect = e-116
Identities = 83/330 (25%), Positives = 144/330 (43%), Gaps = 29/330 (8%)
Query: 44 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
LS+ + GL + NP + SG G K G+++ K +L + N TPR
Sbjct: 4 NNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHP-RFGNPTPR 62
Query: 104 YARLRAGANGSAKGQIIGWENIELISDRPLETMLKE-FKQLKALYPDKILIASIMEEYNK 162
A +G N + + LE ++ E L +P+ +IA++
Sbjct: 63 VAETASGML-----------NAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEA 111
Query: 163 AAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVW 222
+ + AIE+N SCP+ + G A G D + + A + VP++
Sbjct: 112 DYVAVCAKIGDAANVKAIELNISCPN---VKHGGQAFGTDPEVAAALVKACKAVSKVPLY 168
Query: 223 AKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCK 282
K++PN+TDI A+ +G++G++ INT+M + DLKT +P + GG S
Sbjct: 169 VKLSPNVTDIVPIAKAVEAAGADGLTMINTLMG-VRFDLKTRQPILA----NITGGLSGP 223
Query: 283 AVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMH 342
A+ P+AL + +A+ + D + G+GGV D E + GA+ V V T
Sbjct: 224 AIKPVALKLIHQVAQDV-------DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFAD 276
Query: 343 GYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+ + ++ ++L + M + S+E
Sbjct: 277 PF-VCPKIIDKLPELMDQYRIESLESLIQE 305
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 357 bits (919), Expect = e-114
Identities = 124/337 (36%), Positives = 187/337 (55%), Gaps = 10/337 (2%)
Query: 44 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPR 103
D+S+ + GL+ NPF + S P T+ ++++RAF+ GWG + KT SLD V NV+PR
Sbjct: 530 LVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPR 589
Query: 104 YARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKA 163
R GQ + NIELIS++ + +LKA +PD I+IASIM YNK
Sbjct: 590 IVRGTTSGPMYGPGQS-SFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKN 648
Query: 164 AWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWA 223
W EL + E +G DA+E+N SCPHGM ER MG A GQD L+ +C W+ +P +A
Sbjct: 649 DWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFA 708
Query: 224 KMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCV--EGYSTPGGYSC 281
K+TPN+TDI AR A G++GV+A NT+ +MG+ P P V +T GG S
Sbjct: 709 KLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGT-PWPAVGAGKRTTYGGVSG 767
Query: 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMM 341
A+ PIAL V +IA+ + + + GG+++ +F+ GA+ +QVC+ V
Sbjct: 768 TAIRPIALRAVTTIARAL------PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN 821
Query: 342 HGYGLVKRLCEELKDFMKMHNFSSIEDFRGASIEYFT 378
+ +++ C LK + + + ++ + G S +
Sbjct: 822 QDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTES 858
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
1jrc_A* 1jqx_A*
Length = 311
Score = 242 bits (619), Expect = 1e-77
Identities = 76/335 (22%), Positives = 132/335 (39%), Gaps = 38/335 (11%)
Query: 47 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYAR 106
L+ T + NPF+ SG ++ GA + K+ +L+ + N PRY
Sbjct: 2 LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEK-REGNPLPRYVD 60
Query: 107 LRAGANGSAKGQIIGWEN--IELISDRPLETMLKEFKQLKALYPDKILIASI----MEEY 160
L G+ S +G N + D K K + + SI E
Sbjct: 61 LELGSINS-----MGLPNLGFDYYLDY-------VLKNQKENAQEGPIFFSIAGMSAAEN 108
Query: 161 NKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATV 219
++ +++E+ E+N SCP+ + D E++ + T
Sbjct: 109 -----IAMLKKIQESDFSGITELNLSCPNV----PGEPQLAYDFEATEKLLKEVFTFFTK 159
Query: 220 PVWAKMTPN--ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPG 277
P+ K+ P + A + + V+++N+I + + ID + ++ G
Sbjct: 160 PLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESV--VIKPKDGFG 217
Query: 278 GYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCT 337
G + P AL V + +K E + G GG+ETG DA E +L GA +Q+ T
Sbjct: 218 GIGGAYIKPTALANVRAFYTRLKPEIQ-----IIGTGGIETGQDAFEHLLCGATMLQIGT 272
Query: 338 GVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
+ G + R+ +EL++ M + SI DF G
Sbjct: 273 ALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGK 307
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 230 bits (588), Expect = 2e-72
Identities = 77/351 (21%), Positives = 132/351 (37%), Gaps = 31/351 (8%)
Query: 26 RLPSRIGLRVLASDSASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAV 85
R + + T+ N + +G + G+
Sbjct: 17 RGSHMASMTGGQQMGRGSMVSTHTTIGSFDFDNCLMNAAGVYCMTREELAAIDHSEAGSF 76
Query: 86 VAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKA 145
V T +L+ + N PRYA + G+ S +G N+ + L +L+
Sbjct: 77 VTXTGTLEE-RAGNPQPRYADTKLGSINS-----MGLPNL------GINYYLDYVTELQK 124
Query: 146 LYPDKILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCR 204
K S++ + ++ VE + +E+N SCP+ + D
Sbjct: 125 QPDSKNHFLSLVG-MSPEETHTILXMVEASKYQGLVELNLSCPNVPGXP----QIAYDFE 179
Query: 205 LLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSV---MGIDL 261
+++ + T P+ K+ P DI + A ++ +N I S+ + I+
Sbjct: 180 TTDQILSEVFTYFTKPLGIKLPPYF-DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIED 238
Query: 262 KTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGD 321
+T+ P + GG V P AL V + K + + G GGV TG D
Sbjct: 239 ETVVIXP----KNGFGGIGGDYVKPTALANVHAFYKRLNPSI-----QIIGTGGVXTGRD 289
Query: 322 AAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
A E IL GA+ VQ+ T + G + KR+ +EL M + ++EDFRG
Sbjct: 290 AFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEKGYETLEDFRGK 340
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET:
FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 211 bits (539), Expect = 5e-65
Identities = 77/361 (21%), Positives = 131/361 (36%), Gaps = 43/361 (11%)
Query: 24 GLRLPSRIGLRVLASDSAS-AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGW 82
GL + L + + NPF+ +G T + +
Sbjct: 13 GLVPAGSHMASMTGGQQMGRGSMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESAS 72
Query: 83 GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQI--IGWENIELISDRPLETMLKEF 140
G++V+K+ + + N TPRY L G+ I +G N + L
Sbjct: 73 GSLVSKSCTPALREG-NPTPRYQALPLGS-------INSMGLPN------NGFDFYLAYA 118
Query: 141 KQLKALYPDKILIASI----MEEYNKAAWEELIDRVEETGIDAIEVNFSCPH--GMPERK 194
+ Y K L S+ M E + + + V +E+N SCP+ G
Sbjct: 119 AEQHD-YGKKPLFLSMSGLSMRENVEMC--KRLAAVATEKGVILELNLSCPNVPG----- 170
Query: 195 MGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVAL---RSGSEGVSAIN 251
V D + + ++ KM P A + + ++ IN
Sbjct: 171 -KPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCIN 229
Query: 252 TIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLS 311
+I + + ID +T ++ GG + V P AL + + + + +
Sbjct: 230 SIGNGLVIDAETESV--VIKPKQGFGGLGGRYVLPTALANINAFYRRCPGK------LIF 281
Query: 312 GIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRG 371
G GGV TG DA +L GA+ VQV T + G + +RL EL M + ++++FRG
Sbjct: 282 GCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQTLDEFRG 341
Query: 372 A 372
Sbjct: 342 K 342
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine
biosynthesis, fumarate reductase, energy metabolism,
redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A
{Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A*
2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Length = 314
Score = 205 bits (524), Expect = 2e-63
Identities = 80/336 (23%), Positives = 129/336 (38%), Gaps = 38/336 (11%)
Query: 46 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYA 105
L + + NPF+ +G + ++ GA+V+K+ + N PRY
Sbjct: 3 CLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDG-NPEPRYM 61
Query: 106 RLRAGA-NGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASI----MEEY 160
G+ N +G N + LK L Y K L SI +EE
Sbjct: 62 AFPLGSINS------MGLPN------LGFDFYLKYASDLHD-YSKKPLFLSISGLSVEEN 108
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
+ V + +E+N SCP+ V D + ++ +P
Sbjct: 109 VAMV--RRLAPVAQEKGVLLELNLSCPN----VPGKPQVAYDFEAMRTYLQQVSLAYGLP 162
Query: 221 VWAKMTPNITDITEPARVALR----SGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTP 276
KM P DI A + V+ +N++ + + ID ++ ++
Sbjct: 163 FGVKMPPYF-DIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESV--VIKPKQGF 219
Query: 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336
GG K + P AL V + + D + G GGV +G DA IL GA+ VQV
Sbjct: 220 GGLGGKYILPTALANVNAFYRRCP------DKLVFGCGGVYSGEDAFLHILAGASMVQVG 273
Query: 337 TGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
T + G G+ RL +EL + M + ++E+FRG
Sbjct: 274 TALQEEGPGIFTRLEDELLEIMARKGYRTLEEFRGR 309
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri,
dihydroorotate; alpha-beta barrel, TIM barrel,
oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium
falciparum} SCOP: c.1.4.1
Length = 443
Score = 75.1 bits (185), Expect = 8e-15
Identities = 38/223 (17%), Positives = 78/223 (34%), Gaps = 23/223 (10%)
Query: 152 LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCG 211
+I S+ EE + +++ D V M +
Sbjct: 237 IILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNT--- 293
Query: 212 WINAKATVPVWAKMTPNITD--ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPC 269
K V+ K+ P++ E A V L + +G+ NT + D+K+ +
Sbjct: 294 ---TKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNT--TTQINDIKSFENKK- 347
Query: 270 VEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG 329
GG S + I+ + + + + GG+ +G DA E I G
Sbjct: 348 -------GGVSGAKLKDISTKFICEMYNYTNKQIP-----IIASGGIFSGLDALEKIEAG 395
Query: 330 ANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
A+ Q+ + ++ +G ++ EL + + ++++ G
Sbjct: 396 ASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGR 438
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase;
HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A*
2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A*
3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A*
2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Length = 367
Score = 70.6 bits (174), Expect = 1e-13
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 17/163 (10%)
Query: 213 INAKATVPVWAKMTPNITD--ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCV 270
+ V K+ P++T + A V G +G+ NT +S RP
Sbjct: 215 LRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVS---------RPAGLQ 265
Query: 271 EGYST-PGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG 329
+ GG S K + ++ + I +M + G+GGV +G DA E I G
Sbjct: 266 GALRSETGGLSGKPLRDLST-QT--IREM--YALTQGRVPIIGVGGVSSGQDALEKIRAG 320
Query: 330 ANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
A+ VQ+ T + G +V ++ EL+ +K F + D GA
Sbjct: 321 ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGA 363
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial;
triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein,
membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A
{Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A*
3sfk_A*
Length = 415
Score = 69.2 bits (170), Expect = 5e-13
Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 197 AAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITD--ITEPARVALRSGSEGVSAINTIM 254
+ ++ + +E + K V+ K+ P++ E A V L + +G+ NT
Sbjct: 248 DNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT 307
Query: 255 SVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIG 314
+ +K+ + GG S + I+ K I +M + +K + G
Sbjct: 308 QIND--IKSFENKK--------GGVSGAKLKDIST-KF--ICEM--YNYTNKQIPIIASG 352
Query: 315 GVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKDFMKMHNFSSIEDFRGA 372
G+ +G DA E I GA+ Q+ + ++ +G ++ EL + + ++++ G
Sbjct: 353 GIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGR 410
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 1e-08
Identities = 51/285 (17%), Positives = 92/285 (32%), Gaps = 94/285 (32%)
Query: 157 MEEYN-----KAAWEELIDR--VEETGIDAIE----------VNFSCPHGMPER----KM 195
M+ Y + W D + G ++ ++F G R M
Sbjct: 1633 MDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 196 GAAVGQDCRL-LEEVCGWINAKATVPVWAKMTP----NITDITEPARVALRSGSEGVSAI 250
D +L E++ IN +T + + + T T+PA + +A
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFR--SEKGLLSATQFTQPALTLM-----EKAAF 1744
Query: 251 NTIMSVMGIDLKTLRPEPCVE-GYSTPGGYSCKAVHPIALGKVMSIAKMMK--------- 300
+ S K L P G+S G Y+ A+ +L VMSI +++
Sbjct: 1745 EDLKS------KGLIPADATFAGHSL-GEYA--ALA--SLADVMSIESLVEVVFYRGMTM 1793
Query: 301 ------SEFNDKDYSLSGI--GGVETGG--DAAEFIL--LGANT---VQ----------- 334
E +Y + I G V +A ++++ +G T V+
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 335 VCTGVMMHGYGLVKRLCEELKDFMKMHNFS--------SIEDFRG 371
V G + + + L F+K+ S+E+ G
Sbjct: 1854 VAAG-DLRA---LDTVTNVLN-FIKLQKIDIIELQKSLSLEEVEG 1893
Score = 47.0 bits (111), Expect = 1e-05
Identities = 61/336 (18%), Positives = 90/336 (26%), Gaps = 145/336 (43%)
Query: 9 IISNSNT--SFAVNRRPGLRLPSRIGLR-------------VLASDSASAE----PDLSI 49
I+ +++ SF V+ R + + IG+R +L + E P LSI
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 50 T----------------------------VNGLQMPNPFVIGSGPPGTNYTVMKRAFDEG 81
+ VNG V+ SGPP
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG---AKNLVV-SGPP-------------- 383
Query: 82 WGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFK 141
SL + LR S Q I S+R L+ F
Sbjct: 384 --------QSLYGLNL--------TLRKAKAPSGLDQ----SRIPF-SERKLKFSN-RF- 420
Query: 142 QLKALYPDKILIA----SIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGA 197
L P +A S A + + + + + + P
Sbjct: 421 -L----P----VASPFHS---HLLVPASDLINKDLVKNNVSFNAKDIQIP---------- 458
Query: 198 AV-----GQDCR-----LLEEVCGWINAKATVPV-WAKMTP-NITDITEPARVALRSGSE 245
V G D R + E + I +PV W T T I L G
Sbjct: 459 -VYDTFDGSDLRVLSGSISERIVDCI---IRLPVKWETTTQFKATHI-------LDFGPG 507
Query: 246 GVSAINTIMSVM--G-----IDLKTLRPEPCVE-GY 273
G S + + G I TL P + G+
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 39.6 bits (92), Expect = 0.002
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 53/126 (42%)
Query: 105 ARLRAGANGSAK------GQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIME 158
A RA G+A+ GQ G N + F++L+ LY +
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQ--G--NTD-----------DYFEELRDLY----------Q 178
Query: 159 EYNKAAWEELIDRVEET----GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWIN 214
Y +LI ET ++ G+ + W+
Sbjct: 179 TY-HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-----------------NILEWLE 220
Query: 215 AKATVP 220
+ P
Sbjct: 221 NPSNTP 226
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 52.9 bits (128), Expect = 8e-08
Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 219 VPVWAKMTPNITD--ITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTP 276
VP+ K+ P++++ + + A +R +GV A NT + + +
Sbjct: 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQT-------- 263
Query: 277 GGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVC 336
GG S + + + + ++ + + G+GG+++ A E I GA+ VQ+
Sbjct: 264 GGLSGRPLQLKSTEIIRRLSLELNGRL-----PIIGVGGIDSVIAAREKIAAGASLVQIY 318
Query: 337 TGVMMHGYGLVKRLCEEL 354
+G + G L+K + +
Sbjct: 319 SGFIFKGPPLIKEIVTHI 336
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 1e-07
Identities = 58/440 (13%), Positives = 129/440 (29%), Gaps = 118/440 (26%)
Query: 16 SFAVNRRPGLRLPSRIGLRVLASDSASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMK 75
+ P L L + ++ D S + I S +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-------KLRIHSIQAELRRLLKS 240
Query: 76 RAF-------DEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELI 128
+ + A +L K++ +T R+ ++ + + I + +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSC-KIL-LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 129 SDRPLETMLKEF---------KQLKALYPDKI-LIASIMEEYNKAAWEEL----IDRVEE 174
+ ++++L ++ +++ P ++ +IA + + A W+ D++
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTT 357
Query: 175 TGIDAIEVNFSC--PHGMPERKMGAAVGQDCRLLEE-VCGWINAKATVPVWAKMTPN--- 228
IE + + P RKM + I +W + +
Sbjct: 358 I----IESSLNVLEPAEY--RKMF----DRLSVFPPSA--HIPTILLSLIWFDVIKSDVM 405
Query: 229 -ITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTLRPEP------CVEGYSTPGGYSC 281
+ + + + E +I +I ++LK V+ Y+ P +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 282 KAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIG----GVETGGDAAEF--ILL------- 328
+ P L D Y S IG +E F + L
Sbjct: 462 DDLIPPYL---------------D-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 329 ---GANTVQVCTGVMMH---------GY-----GLVKRLCEELKDFMKMHNFSSIEDFRG 371
+T +G +++ Y +RL + DF+ + I
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC---- 561
Query: 372 ASIEYFTTHTELVR--MQQE 389
+ +T+L+R + E
Sbjct: 562 ------SKYTDLLRIALMAE 575
Score = 51.4 bits (122), Expect = 4e-07
Identities = 76/455 (16%), Positives = 133/455 (29%), Gaps = 151/455 (33%)
Query: 12 NSNTSFA---VNR-RPGLRLPSRIGLRVLASDSASAEPDLSITVNGLQMPNPFVIGSGPP 67
N N FA V+R +P L+L R L L+ P V+ G
Sbjct: 121 NDNQVFAKYNVSRLQPYLKL--RQALL------------------ELR-PAKNVLIDG-- 157
Query: 68 GTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIEL 127
+ G G KT + A V Y I W + L
Sbjct: 158 ------VL-----GSG----KTW-V-ALDVCL---SYKVQCKMDFK------IFW--LNL 189
Query: 128 ISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCP 187
+ ET+L + L+ L I + D I++
Sbjct: 190 KNCNSPETVL---EMLQKLL------YQIDPNWT-----SRSDH-----SSNIKLRIHSI 230
Query: 188 HGMPERKMGAAVGQDCRL-LEEVCGWINAKATVPVWAKM---------T--PNITDITEP 235
R + + ++C L L V NAK W T +TD
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQ---NAK----AWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 236 A---RVALRSGSEGVSAINT---IMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL 289
A ++L S ++ ++ + + L E +P L
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-------------TTNPRRL 330
Query: 290 GKVMSIAKMMKSEFNDKDY---------------SLSGIGGVETGGDAAE----FILLG- 329
IA+ ++ D SL+ + + AE F L
Sbjct: 331 S---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAEYRKMFDRLSV 380
Query: 330 -ANTVQVCTGVMMHGYGLVKRLCEELKDFM-KMHNFSSIE-DFRGASIEYFTTHTELVRM 386
+ + T ++ + V + ++ + K+H +S +E + ++I + + EL ++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KV 437
Query: 387 QQEAIQQ--RKAVRKGLQSDKDWTGDGFVKETLSM 419
+ E R V K + D + L
Sbjct: 438 KLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQ 471
Score = 39.5 bits (91), Expect = 0.002
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 24/157 (15%)
Query: 279 YSCKAVHPIALGKVMS------IAKMMKSEFNDKDYS-LSGIGGVETGGDAAEFILL--G 329
Y K + + + + M KS + ++ + +G + LL
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 330 ANTVQVCTG-VMMHGYG-LVKRLCEELKD-FMKMHNFSSIEDFRGASIEYFTTHTELVRM 386
VQ V+ Y L+ + E + M + D + F + + R
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSR- 133
Query: 387 QQEAIQQRKAVRKGLQSDKDWTG------DGFVKETL 417
+Q +R+ L + G K +
Sbjct: 134 ----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Score = 37.9 bits (87), Expect = 0.007
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 28/100 (28%)
Query: 337 TGVMMHGYGLVKRLCEE-LKDFMKMHNFSSIEDF-RGASIEYFTT----------HTE-- 382
TG + Y K + F+ + ++D + +
Sbjct: 11 TGEHQYQY---KDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSKDAVSG 63
Query: 383 ------LVRMQQEAIQQRKAVRKGLQSDKDWTGDGFVKET 416
+ +QE + Q+ V + L+ + + E
Sbjct: 64 TLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQ 102
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 44.0 bits (104), Expect = 6e-05
Identities = 58/353 (16%), Positives = 113/353 (32%), Gaps = 71/353 (20%)
Query: 34 RVLASDSASAEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLD 93
L D A + D+S + L +P I + T G G + ++
Sbjct: 33 VSL-PDLALEQVDISTKIGELSSSSPIFINA------MT--------GGGGKLTYEINKS 77
Query: 94 AAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILI 153
A+ A G +G + L + ++ ++ P+ ++
Sbjct: 78 LARA-----------ASQAGIP--LAVGSQMSALKDPSERLS----YEIVRKENPNGLIF 120
Query: 154 ASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPH--GMPERKMGAAVGQDCRLLEEVCG 211
A++ ++A + + VE G +A++++ + MPE +
Sbjct: 121 ANL---GSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDR------SFSGALKRIE 171
Query: 212 WINAKATVPVWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTL--RPEPC 269
I ++ +VPV K A +G +D+
Sbjct: 172 QICSRVSVPVIVKEVGFGMS-KASAGKLYEAG------------AAAVDIGGYGGTNFSK 218
Query: 270 VEGYSTPGGYSCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLG 329
+E S I+ + ++SEF SG G++ D A+ I LG
Sbjct: 219 IENLRRQRQISFFNSWGISTAASL---AEIRSEFPASTMIASG--GLQDALDVAKAIALG 273
Query: 330 ANTV----QVCTGVMMHGY----GLVKRLCEELKDFMKMHNFSSIEDFRGASI 374
A+ + G ++ + EELK M + +I D + A +
Sbjct: 274 ASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPL 326
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 43.3 bits (102), Expect = 8e-05
Identities = 53/347 (15%), Positives = 107/347 (30%), Gaps = 65/347 (18%)
Query: 43 AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTP 102
+E + ++ P ++ M G ++ A+V
Sbjct: 45 SEINTKTKFFRKEISVPVMVTG---------M------TGGRNELGRINKIIAEV----- 84
Query: 103 RYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIA--SIMEEY 160
A G +G + + + E+ F ++ + P +IA + +
Sbjct: 85 ------AEKFGIP--MGVGSQRVAIEKAEARES----FAIVRKVAPTIPIIANLGMPQLV 132
Query: 161 NKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVP 220
+E D ++ DAI V+ + + + + + E I+ + +VP
Sbjct: 133 KGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGE---PEYQIYALEKLRDISKELSVP 189
Query: 221 VWAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTL--RPEPCVEGY-STPG 277
+ K + N E A++ G + D +E
Sbjct: 190 IIVKESGNGIS-METAKLLYSYG------------IKNFDTSGQGGTNWIAIEMIRDIRR 236
Query: 278 GYSCKAVHPIALGKVMSIA---KMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQ 334
G L + A ++ D SG G+ +G DAA+ I LGA+
Sbjct: 237 GNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSG--GIRSGLDAAKAIALGADIAG 294
Query: 335 VCTGVMMHGYG-------LVKRLCEELKDFMKMHNFSSIEDFRGASI 374
+ V+ +++ ELK M + ++ + SI
Sbjct: 295 MALPVLKSAIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSI 341
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 43.0 bits (101), Expect = 1e-04
Identities = 62/339 (18%), Positives = 111/339 (32%), Gaps = 65/339 (19%)
Query: 43 AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTP 102
+E DL+ G + PF+IG+ M G + ++L A+
Sbjct: 44 SEVDLTTPFLGKTLKAPFLIGA---------MTG------GEENGERINLALAEA----- 83
Query: 103 RYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASI-MEEYN 161
A A G +G I L L + +++ + P +LIA++ + +
Sbjct: 84 ------AEALGVGMM--LGSGRILLERPEALRSF-----RVRKVAPKALLIANLGLAQLR 130
Query: 162 KAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPV 221
+ ++L+ VE DA+ H P ++ D R L E PV
Sbjct: 131 RYGRDDLLRLVEMLEADALAF-----HVNPLQEAVQRGDTDFRGLVERL-AELLPLPFPV 184
Query: 222 WAKMTPNITDITEPARVALRSGSEGVSAINTIMSVMGIDLKTL--RPEPCVEGYSTPGGY 279
K + E A + +D+ VE + G
Sbjct: 185 MVKEVGHGLS-REAALALRDLP------------LAAVDVAGAGGTSWARVEEWVRFGEV 231
Query: 280 SCKAVHPIALGKVMSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGV 339
+ I + +I ++ SG GV TG D A+ + LGA+ + V +
Sbjct: 232 RHPELCEIGIPTARAIL-EVREVLPHLPLVASG--GVYTGTDGAKALALGADLLAVARPL 288
Query: 340 MMHGYG-------LVKRLCEELKDFMKMHNFSSIEDFRG 371
+ + EEL+ + + ++ RG
Sbjct: 289 LRPALEGAERVAAWIGDYLEELRTALFAIGARNPKEARG 327
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.004
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 26 RLPSRIGLRVLASDSASAEPDLSI--TV 51
+L + L++ A DSA P L+I T+
Sbjct: 24 KLQAS--LKLYADDSA---PALAIKATM 46
Score = 31.5 bits (70), Expect = 0.23
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 14/40 (35%)
Query: 123 ENIELISDRPLETMLKEFKQLKALY-PDK---ILIASIME 158
E L + L+ LK LY D + I + ME
Sbjct: 18 EKQAL---KKLQASLK-------LYADDSAPALAIKATME 47
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 30.6 bits (70), Expect = 0.77
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 171 RVEETGIDAIEVNFSCPHGMPE--RKM-GAAVGQDCRLLEEVCGWINAKATVPVWAKMTP 227
R+ I++N CP + + ++ G A+ +D R + + + K
Sbjct: 78 RILSEKYKWIDLNAGCP--VRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRL 135
Query: 228 NITD--ITEPARVALRSGSEGVSAI 250
+ E R+ + GV +
Sbjct: 136 GWEKNEVEEIYRILVEE---GVDEV 157
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 30.9 bits (70), Expect = 0.82
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 314 GGVETGGDAAEFILLGANTVQVCTGVM--MHGYG------LVKRLCEELKDFMKMHNFSS 365
GG+ D + ++LGA V + ++ + + +V E+L+ M N +
Sbjct: 285 GGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQT 344
Query: 366 IEDFRGASI 374
I + R
Sbjct: 345 IAELRNVDY 353
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: AMP; 1.94A {Bifidobacterium
adolescentis} PDB: 3e0f_A*
Length = 301
Score = 30.3 bits (69), Expect = 1.0
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 206
+ +E +D + G+D +EV + + +R+ + LL
Sbjct: 210 NRRLLSDEQLDAMIADGLDGLEV-WHRGNPPEQRERLLTIAARHDLL 255
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 29.8 bits (68), Expect = 1.5
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 36/112 (32%)
Query: 166 EELIDRVEETGIDAIEV----------------NFSCPHGMPERKMGAAVGQDCRLLEEV 209
+++D + G AI + F P GMP + + L +
Sbjct: 149 RDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNI 208
Query: 210 CGWINAKAT------------VPVWAK--MTPNITDITEPARVALRSGSEGV 247
G K + +PV+ K P E A +A++ G+ G+
Sbjct: 209 YGASKQKISPRDIEEIAGHSGLPVFVKGIQHP------EDADMAIKRGASGI 254
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB:
2yb4_A
Length = 292
Score = 29.9 bits (68), Expect = 1.5
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 160 YNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 206
+ E LI + G IEV S H + + A L
Sbjct: 197 MGRTLIERLILDFQAAGGQGIEV-ASGSHSLDDMHKFALHADRHGLY 242
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, TIM barrel;
2.30A {Alicyclobacillus acidocaldarius subsp}
Length = 281
Score = 29.8 bits (67), Expect = 1.7
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 166 EELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCR 204
+D ETG ++V F ER AAV +
Sbjct: 19 VLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQ 57
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold,
protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Length = 117
Score = 28.0 bits (62), Expect = 2.6
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 129 SDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEEL 168
D LE E +++A YPD++ + I+E+ + + ++
Sbjct: 7 EDHSLEHRCVESAKIRAKYPDRVPV--IVEKVSGSQIVDI 44
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin,
thiordoxin-like, oxidoreductase; NMR {Desulfovibrio
fructosovorans}
Length = 85
Score = 27.1 bits (61), Expect = 3.6
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 329 GANTVQVCTGV--MMHGYG-LVKRLCEELK 355
G + VC G + G +V E+LK
Sbjct: 5 GKYPISVCMGTACFVKGADKVVHAFKEQLK 34
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI,
protein structure initiative; HET: APR; 1.60A
{Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Length = 386
Score = 28.7 bits (65), Expect = 4.4
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 298 MMKSEFNDKDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKRLCEELKD 356
MM + + + G G V D + G + T + G+V ++ +++
Sbjct: 1 MMANRMILNETAWFGRGAVGALTDEVK--RRGYQKALIVTDKTLVQCGVVAKVTDKMDA 57
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase,
phosphate-binding motif; 2.04A {Escherichia coli} PDB:
3cqi_A 3cqh_A 3cqk_A
Length = 295
Score = 28.5 bits (64), Expect = 4.6
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 165 WEELIDRVEETGIDAIEVNFSCPHGMPER 193
W E + + G D +E++ R
Sbjct: 32 WLERLQLAKTLGFDFVEMSVDETDERLSR 60
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 28.0 bits (62), Expect = 6.6
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 121 GWENIELISDR---PLETMLKEFKQLKALYPD-KILIA 154
WE + + +L F+ L + + ++
Sbjct: 206 KWEAGDANERYNQEKAKGLLGGFRLLHEADKELEFSLS 243
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Length = 165
Score = 27.2 bits (61), Expect = 6.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 158 EEYNKAAWEELIDRVEETGIDAIEV 182
E+ AA EL EETG+ + EV
Sbjct: 51 EDPRNAAIRELR---EETGVTSAEV 72
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold,
structural genomics, J center for structural genomics,
JCSG; 1.90A {Arthrobacter SP}
Length = 188
Score = 27.4 bits (60), Expect = 7.0
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 181 EVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVAL 240
E + + G++ LL GW+ V+A + + ++ +
Sbjct: 115 EADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGN----VFATIVEGLDEMAAACQDIW 170
Query: 241 RSGSEGVS 248
G+ +
Sbjct: 171 MGGARDET 178
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 27.9 bits (62), Expect = 7.5
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 130 DRPLETMLKEFKQLKALYPD-KILIA 154
D ++ LKA P +I+ +
Sbjct: 68 DAKARDVVNRLTALKAHNPSLRIMFS 93
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 27.8 bits (62), Expect = 8.9
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 130 DRPLETMLKEFKQLKALYPD-KILIA 154
D+P+ + + +LK P+ K +I+
Sbjct: 103 DQPIAGNINQLNKLKQTNPNLKTIIS 128
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 27.5 bits (62), Expect = 9.1
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 308 YSLSGIGGVETG---------GDAAEFILLGANTVQVCTGVMM 341
YS+ G G V TG GD EF+ N V TG+ M
Sbjct: 212 YSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEM 254
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.4 bits (61), Expect = 9.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 81 GWGAVVAKTVSLDAAKVINVTPRYARL 107
G+ A VA T +D A+ VT R A +
Sbjct: 123 GFIANVAHTFVVDVAQGTQVTGRKADV 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,617,241
Number of extensions: 423355
Number of successful extensions: 1324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 51
Length of query: 422
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 326
Effective length of database: 4,021,377
Effective search space: 1310968902
Effective search space used: 1310968902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)