BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014582
(422 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255548277|ref|XP_002515195.1| peptide chain release factor, putative [Ricinus communis]
gi|223545675|gb|EEF47179.1| peptide chain release factor, putative [Ricinus communis]
Length = 422
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/425 (77%), Positives = 375/425 (88%), Gaps = 11/425 (2%)
Query: 2 RKVNWAIALHLGALRQLESSSSIS-HRNPLLHQRWFVQRAAATPSLSNFRSYSTEM---L 57
R +NWAI +QL+ SS+I+ H++ + + F+ A A S R+YSTE+ L
Sbjct: 5 RGLNWAI-------KQLQFSSAITWHQSHSIRESSFLGSAIANASHLFSRAYSTELQSHL 57
Query: 58 SNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQ 117
S DLI+IMEQR+ AIE RSA LEN +++ EASPAEYS+ANKELRKLR + LISELR+ Q
Sbjct: 58 SPDLIRIMEQRLSAIEHRSAYLENFIDKLEASPAEYSRANKELRKLRRPVELISELRSIQ 117
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
KEIDGL+SL+ EC EDK M+DMA EEL AI+EEKRLQ++LLKSLLP DDADERDCILEV
Sbjct: 118 KEIDGLRSLMAECPEDKHMIDMANEELNQAIEEEKRLQNVLLKSLLPTDDADERDCILEV 177
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEASLF++D+F+MYERYSQKKGWKFEVV +TESDL+GYKEASAAISG GV+GKL
Sbjct: 178 RAGTGGEEASLFSMDIFRMYERYSQKKGWKFEVVDITESDLKGYKEASAAISGAGVFGKL 237
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGSGGQH
Sbjct: 238 KFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQH 297
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
ANTTNSAVRVTH+PTGMT+SIQDERSQHMNKAKALKVLCAKLYE+ERSRI +SRSKLRSE
Sbjct: 298 ANTTNSAVRVTHLPTGMTVSIQDERSQHMNKAKALKVLCAKLYEIERSRIQMSRSKLRSE 357
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI++MM+GE+LD+FIDALLLQQEMDAIAS
Sbjct: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAINNMMQGESLDVFIDALLLQQEMDAIAS 417
Query: 418 FGSTQ 422
F +
Sbjct: 418 FSCAE 422
>gi|225437801|ref|XP_002274067.1| PREDICTED: peptide chain release factor 1 [Vitis vinifera]
gi|297744098|emb|CBI37068.3| unnamed protein product [Vitis vinifera]
Length = 392
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 315/381 (82%), Positives = 348/381 (91%), Gaps = 4/381 (1%)
Query: 41 AATPSLSNFRSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKAN 97
A TP S R YSTE+ LS DLI IMEQR+ AIE RSA L++ +N+PEASP EY++AN
Sbjct: 2 AKTP-FSFIRPYSTELQPQLSTDLIGIMEQRLSAIEHRSAYLQDFINRPEASPVEYARAN 60
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
KELRKLR S+ I+ELR KQKEIDGLKSL+ ECSEDKDML+MA EEL A +EEKRLQ+L
Sbjct: 61 KELRKLRSSIEHITELRNKQKEIDGLKSLMAECSEDKDMLNMAAEELGQAAEEEKRLQNL 120
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
LLKSLLPKD+ADERDCILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKFEVV +TESD
Sbjct: 121 LLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFEVVDITESD 180
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
L+GYKEAS AISG GVYGKLKFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+
Sbjct: 181 LKGYKEASGAISGSGVYGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQ 240
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCA 337
LRNEDLRIDTYRSGGSGGQHANTTNSAVR+THIP+GMT++IQDERSQHMNKAKALKVLCA
Sbjct: 241 LRNEDLRIDTYRSGGSGGQHANTTNSAVRITHIPSGMTVAIQDERSQHMNKAKALKVLCA 300
Query: 338 KLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGE 397
KLYE+ERSRI RSKLR EQIGSGDRSERIRTYNFPQGRVTDHRVGITHH+++D+M+GE
Sbjct: 301 KLYEIERSRIQKDRSKLRMEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHSVNDVMQGE 360
Query: 398 NLDIFIDALLLQQEMDAIASF 418
NLD+FIDALLLQQEMDAIASF
Sbjct: 361 NLDVFIDALLLQQEMDAIASF 381
>gi|224130870|ref|XP_002320945.1| predicted protein [Populus trichocarpa]
gi|222861718|gb|EEE99260.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 303/358 (84%), Positives = 339/358 (94%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
MEQR+ AIE RSACLEN +NQPEASP E+S+ANKELRKLR SM LI+ LRTKQKEIDGL+
Sbjct: 1 MEQRLSAIEHRSACLENFMNQPEASPTEFSRANKELRKLRGSMELITYLRTKQKEIDGLR 60
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
SL+ EC EDKDMLDMA EEL A++EEKRLQ+LLLKSLLP+DDADERDCILEVRAG+GGE
Sbjct: 61 SLMTECPEDKDMLDMANEELSQAMEEEKRLQNLLLKSLLPRDDADERDCILEVRAGSGGE 120
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EASLFA+D+FKMYER+SQ GWKFEVV +TESDL+GYKEASAAISG V+GKLKFESGIH
Sbjct: 121 EASLFAMDIFKMYERFSQNNGWKFEVVYITESDLKGYKEASAAISGADVFGKLKFESGIH 180
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TEK GRVHTSAVSVAILPQADEVD++LRNEDLRIDTYRSGGSGGQHANTTNSA
Sbjct: 181 RVQRVPVTEKLGRVHTSAVSVAILPQADEVDLQLRNEDLRIDTYRSGGSGGQHANTTNSA 240
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+TH+PTG+T+SIQDERSQHMNK+KALKVLCAKLYEMERSR+H+SRS+LRSEQIGSGDR
Sbjct: 241 VRITHLPTGITVSIQDERSQHMNKSKALKVLCAKLYEMERSRLHMSRSRLRSEQIGSGDR 300
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
SERIRTYNFPQGRVTDHRVGITHH+I+D+M+GE+LD+FIDALLLQQEMDAIASFGS +
Sbjct: 301 SERIRTYNFPQGRVTDHRVGITHHSINDVMQGESLDVFIDALLLQQEMDAIASFGSIE 358
>gi|449435146|ref|XP_004135356.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus]
gi|449503299|ref|XP_004161933.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus]
Length = 426
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 310/412 (75%), Positives = 358/412 (86%), Gaps = 16/412 (3%)
Query: 14 ALRQLESSSSISHRNPLLHQRWFVQRAAATP--SLSNFRSYS-----TEMLSNDLIKIME 66
AL SS I+ +NPLL + P SLS R YS ++ LS +LIKIME
Sbjct: 18 ALHCRNDSSGIT-KNPLLS-------LPSDPLSSLS-LRFYSKGEVQSQQLSMELIKIME 68
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
QR+ AIE R+ L N++N+PEA PAEY+KANKEL+KLRD+M+LI+ELR+KQKEI+GL++L
Sbjct: 69 QRLTAIELRNTFLLNIINRPEAPPAEYAKANKELKKLRDTMNLITELRSKQKEINGLRTL 128
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E SED+DM DMATEEL A++EEKRLQ LLKSLLP+DDADERD ILEVRAGTGG+EA
Sbjct: 129 MEESSEDRDMFDMATEELEQAVEEEKRLQQFLLKSLLPRDDADERDSILEVRAGTGGDEA 188
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
SLFA+D+FKMYERY+QKKGWKFEVV +TESDL+GYKEA AAISG GVYG+LKFESGIHRV
Sbjct: 189 SLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKEAIAAISGAGVYGRLKFESGIHRV 248
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP+TEK+GRVHTSA+SVAILPQADEVDV L+NEDLRIDT+RSGGSGGQHANTTNSAVR
Sbjct: 249 QRVPVTEKAGRVHTSAISVAILPQADEVDVELKNEDLRIDTFRSGGSGGQHANTTNSAVR 308
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
V H+PTG+T++IQDERSQHMNKAKALK++CAKLYEMER RI SRSKLRSEQIGSGDRSE
Sbjct: 309 VIHVPTGLTVTIQDERSQHMNKAKALKLICAKLYEMERRRIQSSRSKLRSEQIGSGDRSE 368
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
RIRTYNFPQGRVTDHRVGIT H+I ++M+GENLDIF+DALLLQQEMDAIASF
Sbjct: 369 RIRTYNFPQGRVTDHRVGITDHSIEEVMQGENLDIFVDALLLQQEMDAIASF 420
>gi|42569997|ref|NP_182225.3| Peptide chain release factor 1 [Arabidopsis thaliana]
gi|124301088|gb|ABN04796.1| At2g47020 [Arabidopsis thaliana]
gi|330255695|gb|AEC10789.1| Peptide chain release factor 1 [Arabidopsis thaliana]
Length = 413
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 303/376 (80%), Positives = 343/376 (91%), Gaps = 3/376 (0%)
Query: 49 FRSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRD 105
R Y+T M LS DLIKIM+QR+ AIE R+A L+ L+NQPE SP E+S+ANKELRKLRD
Sbjct: 37 IRLYTTGMEPQLSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRKLRD 96
Query: 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPK 165
SM LI++LR KQKEIDGLKSL+ E S+DKDMLD+A EL A++EEKRLQ+LLLKSLLPK
Sbjct: 97 SMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPK 156
Query: 166 DDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225
D+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKKGWKF++V +TESD++GYKEAS
Sbjct: 157 DEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEAS 216
Query: 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRI 285
AAI G VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQADEVDV+LRNEDLRI
Sbjct: 217 AAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRI 276
Query: 286 DTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERS 345
DTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHMN+AKALKVLCA+LYE+ER
Sbjct: 277 DTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERL 336
Query: 346 RIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDA 405
RI SRSKLRS+QIGSGDRS RIRTYNFPQGRVTDHRVGITHHAI DMM+GENLD+FIDA
Sbjct: 337 RIQSSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITHHAIEDMMQGENLDMFIDA 396
Query: 406 LLLQQEMDAIASFGST 421
LLL+QEMDAIASF ST
Sbjct: 397 LLLRQEMDAIASFSST 412
>gi|356503962|ref|XP_003520768.1| PREDICTED: peptide chain release factor 1-like [Glycine max]
Length = 415
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 307/427 (71%), Positives = 359/427 (84%), Gaps = 26/427 (6%)
Query: 5 NWAIALHLGALRQLESSS------SISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEM-- 56
N+ I +L LR +S+ + HR P RSYS E+
Sbjct: 6 NFIICRYLSRLRNQFNSNFEFPLPNFRHRAPFF-----------------LRSYSAEVPA 48
Query: 57 -LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT 115
LS +L+ IMEQR+ AIE R++CL N +NQPEASP+EY++ANKELRKL S+ LI ELR
Sbjct: 49 QLSPELLNIMEQRLSAIEYRTSCLNNFLNQPEASPSEYARANKELRKLSGSVDLIKELRA 108
Query: 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
KQKEIDGLKSL+ ECSEDKDML+MATEE+ A++EE++LQ+LLLKSLLPKDDADERDCIL
Sbjct: 109 KQKEIDGLKSLMAECSEDKDMLNMATEEMGQAVEEERKLQNLLLKSLLPKDDADERDCIL 168
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
EVRAGTGGEEASLFA+D+F+MYE+Y+ +KGWKFEVV + +SD +GYKEASAAI+G GV+
Sbjct: 169 EVRAGTGGEEASLFAMDIFRMYEKYALEKGWKFEVVDIAQSDHKGYKEASAAIAGDGVFR 228
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESGIHRVQRVP+TEKSGR+HTSAVSVAILPQADEVDV+L+NEDLRIDTYRSGGSGG
Sbjct: 229 KLKFESGIHRVQRVPVTEKSGRIHTSAVSVAILPQADEVDVQLKNEDLRIDTYRSGGSGG 288
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QHANTTNSAVRVTHIPTG+ I+IQDERSQHMNKAKALKVLCAKLYEMER R+ SRSKLR
Sbjct: 289 QHANTTNSAVRVTHIPTGIMITIQDERSQHMNKAKALKVLCAKLYEMERLRLRSSRSKLR 348
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
EQIGSGDRSERIRTYNFPQGRVTDHRVGIT+H++ D+M+GENLD+FIDALLLQ+EMDA+
Sbjct: 349 LEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSVDDVMQGENLDVFIDALLLQEEMDAM 408
Query: 416 ASFGSTQ 422
A+F S+Q
Sbjct: 409 ATFSSSQ 415
>gi|297828437|ref|XP_002882101.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp.
lyrata]
gi|297327940|gb|EFH58360.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp.
lyrata]
Length = 410
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 301/376 (80%), Positives = 339/376 (90%), Gaps = 3/376 (0%)
Query: 49 FRSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRD 105
R Y+T M LS DLIKIM+QR+ AIE R+A L+ L+NQPE SP E+S+ANKELRKLRD
Sbjct: 34 IRLYTTGMEPQLSPDLIKIMDQRLSAIEHRNALLQKLINQPEYSPEEFSRANKELRKLRD 93
Query: 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPK 165
SM LI++LR KQKEIDGLKSL+ E S+DKDMLDMA EL A++EEKRLQ+LLLKSLLPK
Sbjct: 94 SMFLINDLRAKQKEIDGLKSLVSESSDDKDMLDMAVSELDEAVEEEKRLQTLLLKSLLPK 153
Query: 166 DDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225
D+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKK WKF++V +TESD++GYKEAS
Sbjct: 154 DEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKAWKFDIVDITESDMKGYKEAS 213
Query: 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRI 285
AAI G VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQADEVDV+LRNEDLRI
Sbjct: 214 AAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRI 273
Query: 286 DTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERS 345
DTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHMN+AKALKVLCA+LYE+ER
Sbjct: 274 DTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERL 333
Query: 346 RIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDA 405
RI SRSKLRS+QIGSGDRS RIRTYNFPQGRVTDHRVGIT HAI DMM+GE LD FIDA
Sbjct: 334 RIQSSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITLHAIEDMMQGEILDSFIDA 393
Query: 406 LLLQQEMDAIASFGST 421
LLL+QEMDAIASF ST
Sbjct: 394 LLLRQEMDAIASFSST 409
>gi|3522941|gb|AAC34223.1| putative peptide chain release factor [Arabidopsis thaliana]
Length = 395
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 299/390 (76%), Positives = 338/390 (86%), Gaps = 25/390 (6%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
LS DLIKIM+QR+ AIE R+A L+ L+NQPE SP E+S+ANKELRKLRDSM LI++LR K
Sbjct: 5 LSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRKLRDSMLLINDLRAK 64
Query: 117 QK-------------------------EIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
QK EIDGLKSL+ E S+DKDMLD+A EL A++EE
Sbjct: 65 QKVVNLLYRIIYLFQRSSLIRFTFCWQEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEE 124
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
KRLQ+LLLKSLLPKD+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKKGWKF++V
Sbjct: 125 KRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIV 184
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+TESD++GYKEASAAI G VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQA
Sbjct: 185 DITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQA 244
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
DEVDV+LRNEDLRIDTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHMN+AKA
Sbjct: 245 DEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKA 304
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LKVLCA+LYE+ER RI SRSKLRS+QIGSGDRS RIRTYNFPQGRVTDHRVGITHHAI
Sbjct: 305 LKVLCARLYEIERLRIQSSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITHHAIE 364
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFGST 421
DMM+GENLD+FIDALLL+QEMDAIASF ST
Sbjct: 365 DMMQGENLDMFIDALLLRQEMDAIASFSST 394
>gi|218196470|gb|EEC78897.1| hypothetical protein OsI_19275 [Oryza sativa Indica Group]
gi|222630945|gb|EEE63077.1| hypothetical protein OsJ_17885 [Oryza sativa Japonica Group]
Length = 368
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 273/367 (74%), Positives = 319/367 (86%)
Query: 54 TEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +L+ +MEQR+ IE+RSA L+ +NQP+ASP EYS+ANKEL KL +M +I EL
Sbjct: 2 NQQLPANLVGVMEQRMKLIEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEEL 61
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
R+KQ+EI+GLKSL+ E+KD +MA +EL A++EEK+LQ L +SLLPKD+ADERDC
Sbjct: 62 RSKQEEIEGLKSLMTNSVEEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDC 121
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
ILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKF+ + + ES L+GYKEAS ISG G
Sbjct: 122 ILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGA 181
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGS 293
YGKLKFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGS
Sbjct: 182 YGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGS 241
Query: 294 GGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSK 353
GGQ NTT+SAVR+TH+PTG ++IQDERSQH NKAKALKVL A+LYE+ER R+H+ RSK
Sbjct: 242 GGQSVNTTDSAVRITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEIERHRLHMDRSK 301
Query: 354 LRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMD 413
LRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH+I D+MEGE+LDIFIDALLL+ EMD
Sbjct: 302 LRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHSIEDVMEGESLDIFIDALLLRYEMD 361
Query: 414 AIASFGS 420
AIASF S
Sbjct: 362 AIASFAS 368
>gi|147818957|emb|CAN67129.1| hypothetical protein VITISV_040170 [Vitis vinifera]
Length = 1542
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 293/393 (74%), Positives = 325/393 (82%), Gaps = 29/393 (7%)
Query: 33 QRWFVQRAAATPSLSNFRSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS 89
Q F+ A S R YSTE+ LS DLI IMEQR+ AIE RSA L++ +N+PEAS
Sbjct: 1176 QNGFLHSTMAKTPFSFIRPYSTELQPQLSTDLIGIMEQRLSAIEHRSAYLQDFINRPEAS 1235
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
P EY++ANKELRKLR S+ I+ELR KQKEIDGLKSL+ ECSEDKDML+MA EEL A
Sbjct: 1236 PVEYARANKELRKLRSSIEHITELRNKQKEIDGLKSLMAECSEDKDMLNMAAEELGQAAG 1295
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
EEKRLQ+LLLKSLLPKD+ADERDCILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKFE
Sbjct: 1296 EEKRLQNLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFE 1355
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
VV +TESDL+GYKEAS AISG GVYGKLKFESGIHRVQ
Sbjct: 1356 VVDITESDLKGYKEASGAISGSGVYGKLKFESGIHRVQ---------------------- 1393
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
VDV+LRNEDLRIDTYRSGGSGGQHANTTNSAVR+THIP+GMT++IQDERSQHMNKA
Sbjct: 1394 ----VDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRITHIPSGMTVAIQDERSQHMNKA 1449
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
KALKVLCAKLYE+ERSRI RSKLR EQIGSGDRSERIRTYNFPQGRVTDHRVGITHH+
Sbjct: 1450 KALKVLCAKLYEIERSRIQKDRSKLRMEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHS 1509
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
++D+M+GENLD+FIDALLLQQEMDAIASF STQ
Sbjct: 1510 VNDVMQGENLDVFIDALLLQQEMDAIASFSSTQ 1542
>gi|242089427|ref|XP_002440546.1| hypothetical protein SORBIDRAFT_09g002890 [Sorghum bicolor]
gi|241945831|gb|EES18976.1| hypothetical protein SORBIDRAFT_09g002890 [Sorghum bicolor]
Length = 416
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 278/386 (72%), Positives = 333/386 (86%), Gaps = 3/386 (0%)
Query: 35 WFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYS 94
W +R + P L + S ++ +N L++IMEQR+ IE+RSA L+ +NQP ASP EYS
Sbjct: 34 W--RRPSPPPRLYSTAEMSQQLPAN-LVQIMEQRMKLIEQRSAYLQEQINQPAASPEEYS 90
Query: 95 KANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL 154
+ANKE RKL +M LI ELR+K++EI+GLKSL+ E+KDM +MA EEL A++ EKRL
Sbjct: 91 RANKEFRKLESTMELIKELRSKREEIEGLKSLVTNAREEKDMREMAAEELLEAVEVEKRL 150
Query: 155 QSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT 214
Q L +SLLPKD+ADERDCILEVRAGTGGEEASLFA+D+F+MYE+Y+QK GWKF+V+ +
Sbjct: 151 QHELFRSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYEKYAQKNGWKFDVIDIM 210
Query: 215 ESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV 274
ES ++GYKEAS ISG G +GKLKFESGIHRVQRVP+TEKSGRVHTSAVSVA+LPQADEV
Sbjct: 211 ESAVKGYKEASGTISGPGAFGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAVLPQADEV 270
Query: 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKV 334
DV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+THIPTG ++IQDERSQHMNKAKALKV
Sbjct: 271 DVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHIPTGTVVAIQDERSQHMNKAKALKV 330
Query: 335 LCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMM 394
L A+LYE+ER R+H+ RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH+I+D+M
Sbjct: 331 LRARLYELERHRLHMDRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHSIADVM 390
Query: 395 EGENLDIFIDALLLQQEMDAIASFGS 420
EGE+LD+F+DALLLQ+EMDAIASFG+
Sbjct: 391 EGESLDVFVDALLLQEEMDAIASFGA 416
>gi|48926665|gb|AAT47454.1| putative peptide chain release factor [Oryza sativa Japonica Group]
Length = 350
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/349 (76%), Positives = 308/349 (88%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
IE+RSA L+ +NQP+ASP EYS+ANKEL KL +M +I ELR+KQ+EI+GLKSL+
Sbjct: 2 IEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEELRSKQEEIEGLKSLMTNSV 61
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
E+KD +MA +EL A++EEK+LQ L +SLLPKD+ADERDCILEVRAGTGGEEASLFA+
Sbjct: 62 EEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDCILEVRAGTGGEEASLFAM 121
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+FKMYE+YSQK GWKF+ + + ES L+GYKEAS ISG G YGKLKFESGIHRVQRVP+
Sbjct: 122 DIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGAYGKLKFESGIHRVQRVPV 181
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+TH+P
Sbjct: 182 TEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHVP 241
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG ++IQDERSQH NKAKALKVL A+LYE+ER R+H+ RSKLRSEQIGSGDRSERIRTY
Sbjct: 242 TGTVVAIQDERSQHQNKAKALKVLRARLYEIERHRLHMDRSKLRSEQIGSGDRSERIRTY 301
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
NFPQGRVTDHRVGITHH+I D+MEGE+LDIFIDALLL+ EMDAIASF S
Sbjct: 302 NFPQGRVTDHRVGITHHSIEDVMEGESLDIFIDALLLRYEMDAIASFAS 350
>gi|226492409|ref|NP_001142228.1| uncharacterized protein LOC100274396 [Zea mays]
gi|194707706|gb|ACF87937.1| unknown [Zea mays]
gi|413917591|gb|AFW57523.1| peptide chain release factor 1 [Zea mays]
Length = 416
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 278/401 (69%), Positives = 339/401 (84%), Gaps = 12/401 (2%)
Query: 20 SSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACL 79
+S ++ R P L R++ +T +S + L +L++IMEQR+ IE+RSA L
Sbjct: 28 ASPPVAWRRPCLPPRFY-----STAEMS-------QQLPANLVEIMEQRMKLIEQRSAYL 75
Query: 80 ENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
+ +NQP ASP EYS+ANKE RKL +M LI +LR+KQ+EI+GLKSL+ E+KDM +M
Sbjct: 76 QEQINQPAASPEEYSRANKEFRKLESTMELIKDLRSKQEEIEGLKSLVANDHEEKDMREM 135
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EEL +A++EEKRLQ L +SLLPKD+ADE+DCILEVRAGTGGEEASLFA+D+F+MYE+
Sbjct: 136 AEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRAGTGGEEASLFAMDIFRMYEK 195
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+QK GWKF+V+ + ES ++GYKEAS ISG G +GKLKFESGIHRVQRVP TEKSGR+H
Sbjct: 196 YAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKFESGIHRVQRVPATEKSGRMH 255
Query: 260 TSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319
TSAVSVA+LPQADEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+THIPTG ++IQ
Sbjct: 256 TSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHIPTGTVVAIQ 315
Query: 320 DERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVT 379
DERSQHMNKAKALKVL A+LYE+ER R+H+ RSKLRSEQIGSGDRSERIRTYNFPQGRVT
Sbjct: 316 DERSQHMNKAKALKVLRARLYELERRRLHMDRSKLRSEQIGSGDRSERIRTYNFPQGRVT 375
Query: 380 DHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
DHRVG+THH+I+D+MEGE+LD+F+DALLLQ+EMDAIASFG+
Sbjct: 376 DHRVGVTHHSIADVMEGESLDMFVDALLLQEEMDAIASFGA 416
>gi|115462961|ref|NP_001055080.1| Os05g0277300 [Oryza sativa Japonica Group]
gi|113578631|dbj|BAF16994.1| Os05g0277300, partial [Oryza sativa Japonica Group]
Length = 349
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/349 (76%), Positives = 308/349 (88%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
IE+RSA L+ +NQP+ASP EYS+ANKEL KL +M +I ELR+KQ+EI+GLKSL+
Sbjct: 1 IEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEELRSKQEEIEGLKSLMTNSV 60
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
E+KD +MA +EL A++EEK+LQ L +SLLPKD+ADERDCILEVRAGTGGEEASLFA+
Sbjct: 61 EEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDCILEVRAGTGGEEASLFAM 120
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+FKMYE+YSQK GWKF+ + + ES L+GYKEAS ISG G YGKLKFESGIHRVQRVP+
Sbjct: 121 DIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGAYGKLKFESGIHRVQRVPV 180
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+TH+P
Sbjct: 181 TEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHVP 240
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG ++IQDERSQH NKAKALKVL A+LYE+ER R+H+ RSKLRSEQIGSGDRSERIRTY
Sbjct: 241 TGTVVAIQDERSQHQNKAKALKVLRARLYEIERHRLHMDRSKLRSEQIGSGDRSERIRTY 300
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
NFPQGRVTDHRVGITHH+I D+MEGE+LDIFIDALLL+ EMDAIASF S
Sbjct: 301 NFPQGRVTDHRVGITHHSIEDVMEGESLDIFIDALLLRYEMDAIASFAS 349
>gi|413917590|gb|AFW57522.1| peptide chain release factor 1 [Zea mays]
Length = 368
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/367 (73%), Positives = 326/367 (88%)
Query: 54 TEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
++ L +L++IMEQR+ IE+RSA L+ +NQP ASP EYS+ANKE RKL +M LI +L
Sbjct: 2 SQQLPANLVEIMEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFRKLESTMELIKDL 61
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
R+KQ+EI+GLKSL+ E+KDM +MA EEL +A++EEKRLQ L +SLLPKD+ADE+DC
Sbjct: 62 RSKQEEIEGLKSLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDC 121
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
ILEVRAGTGGEEASLFA+D+F+MYE+Y+QK GWKF+V+ + ES ++GYKEAS ISG G
Sbjct: 122 ILEVRAGTGGEEASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGA 181
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGS 293
+GKLKFESGIHRVQRVP TEKSGR+HTSAVSVA+LPQADEVDV+LRNEDLRIDTYRSGGS
Sbjct: 182 FGKLKFESGIHRVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGS 241
Query: 294 GGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSK 353
GGQ NTT+SAVR+THIPTG ++IQDERSQHMNKAKALKVL A+LYE+ER R+H+ RSK
Sbjct: 242 GGQSVNTTDSAVRITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELERRRLHMDRSK 301
Query: 354 LRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMD 413
LRSEQIGSGDRSERIRTYNFPQGRVTDHRVG+THH+I+D+MEGE+LD+F+DALLLQ+EMD
Sbjct: 302 LRSEQIGSGDRSERIRTYNFPQGRVTDHRVGVTHHSIADVMEGESLDMFVDALLLQEEMD 361
Query: 414 AIASFGS 420
AIASFG+
Sbjct: 362 AIASFGA 368
>gi|357134763|ref|XP_003568985.1| PREDICTED: peptide chain release factor 1-like [Brachypodium
distachyon]
Length = 417
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 280/379 (73%), Positives = 326/379 (86%), Gaps = 4/379 (1%)
Query: 46 LSNFRSYST----EMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELR 101
L++ R YST + L +L++IMEQR+ IE+RSA L+ +NQP ASP EYS+ANKE
Sbjct: 39 LTSPRLYSTADTSQQLPANLVQIMEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFH 98
Query: 102 KLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS 161
KL +M LI EL++KQKEI+GLKSL+ E+KDM +MA EEL AI+EEK+LQ L ++
Sbjct: 99 KLESTMELIKELQSKQKEIEGLKSLVTNSVEEKDMREMAAEELLEAIEEEKQLQHGLFRT 158
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD+ADERDCILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKF+V+ + ES +GY
Sbjct: 159 LLPKDEADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFDVLDLMESVSKGY 218
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KEAS ISG G YGKLKFESG+HRVQRVP+TEKSGRVHTSAVSVA+LPQADEVDV+LRNE
Sbjct: 219 KEASGTISGPGAYGKLKFESGVHRVQRVPVTEKSGRVHTSAVSVAVLPQADEVDVQLRNE 278
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
DLRIDTYRSGGSGGQ NTT+SAVR+TH+PTG ++IQDERSQH NKAKALKVL A+LYE
Sbjct: 279 DLRIDTYRSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYE 338
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
MER R+H RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH+I D+MEGE+LD+
Sbjct: 339 MERHRLHADRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHSIEDVMEGESLDV 398
Query: 402 FIDALLLQQEMDAIASFGS 420
FIDALLLQ+EMDAIASF S
Sbjct: 399 FIDALLLQEEMDAIASFTS 417
>gi|363543169|ref|NP_001241798.1| peptide chain release factor 1 [Zea mays]
gi|195650889|gb|ACG44912.1| peptide chain release factor 1 [Zea mays]
Length = 356
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/356 (75%), Positives = 318/356 (89%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
MEQR+ IE+RSA L+ +NQP ASP EYS+ANKE RKL +M LI +LR+KQ+EI+GLK
Sbjct: 1 MEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFRKLESTMELIKDLRSKQEEIEGLK 60
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
SL+ E+KDM +MA EEL +A++EEKRLQ L +SLLPKD+ADE+DCILEVRAGTGGE
Sbjct: 61 SLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRAGTGGE 120
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EASLFA+D+F+MYE+Y+QK GWKF+V+ + ES ++GYKEAS ISG G +GKLKFESGIH
Sbjct: 121 EASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKFESGIH 180
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TEKSGR+HTSAVSVA+LPQADEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SA
Sbjct: 181 RVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSA 240
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+THIPTG ++IQDERSQHMNKAKALKVL A+LYE+ER R+H+ RSKLRSEQIGSGDR
Sbjct: 241 VRITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELERRRLHMDRSKLRSEQIGSGDR 300
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
SERIRTYNFPQGRVTDHRVG+THH+I+D+MEGE+LD+F+DALLLQ+EMDAI+SFG+
Sbjct: 301 SERIRTYNFPQGRVTDHRVGVTHHSIADVMEGESLDMFVDALLLQEEMDAISSFGA 356
>gi|215764957|dbj|BAG86654.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 314
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/314 (78%), Positives = 280/314 (89%)
Query: 107 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKD 166
M +I ELR+KQ+EI+GLKSL+ E+KD +MA +EL A++EEK+LQ L +SLLPKD
Sbjct: 1 MDMIEELRSKQEEIEGLKSLMTNSVEEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKD 60
Query: 167 DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 226
+ADERDCILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKF+ + + ES L+GYKEAS
Sbjct: 61 EADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASG 120
Query: 227 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 286
ISG G YGKLKFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRID
Sbjct: 121 TISGPGAYGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRID 180
Query: 287 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR 346
TYRSGGSGGQ NTT+SAVR+TH+PTG ++IQDERSQH NKAKALKVL A+LYE+ER R
Sbjct: 181 TYRSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEIERHR 240
Query: 347 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
+H+ RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH+I D+MEGE+LDIFIDAL
Sbjct: 241 LHMDRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHSIEDVMEGESLDIFIDAL 300
Query: 407 LLQQEMDAIASFGS 420
LL+ EMDAIASF S
Sbjct: 301 LLRYEMDAIASFAS 314
>gi|357511537|ref|XP_003626057.1| Peptide chain release factor [Medicago truncatula]
gi|355501072|gb|AES82275.1| Peptide chain release factor [Medicago truncatula]
Length = 526
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 270/499 (54%), Positives = 329/499 (65%), Gaps = 122/499 (24%)
Query: 45 SLSNFRS--YSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKE 99
SL NFR YS+E+ +S DL+KIMEQR AI+ R+ CL+NL+NQPE S +EY++ANKE
Sbjct: 27 SLPNFRFRLYSSEVEPEISPDLLKIMEQRFSAIKHRATCLDNLINQPETSQSEYARANKE 86
Query: 100 LRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKD------MLDMATEELCLAID---- 149
LRKL S+ LI++L+ KQK I +++I S + D L++ +L L++
Sbjct: 87 LRKLSGSVQLINQLKAKQKVILNSETVIAPPSTNTDTSTPVFTLEVKFRQLGLSVKHSST 146
Query: 150 ---EEKRLQSLL-----------LKSLL-------------------------------- 163
E RL + LKSL+
Sbjct: 147 DNAEIVRLDTFTQVRTRDLEIDGLKSLMNESSEDKDMLNMATEEMGQAIEEERKLQNLLL 206
Query: 164 ----PKDDADERDCILEVRAG-----------TGGEEASLFAVDVFKMYERYSQKKGWKF 208
PKDDADERDCILEVRAG TGGEEASLFA+++FKMYE+Y+ KGWKF
Sbjct: 207 KSLLPKDDADERDCILEVRAGKLSLLKMEIYCTGGEEASLFAMNIFKMYEKYAHNKGWKF 266
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
+VV + +SD++G+KEA+AAI GVGV+GKLKFESGIHRVQRVP+TEK GRVHTSAVSVAIL
Sbjct: 267 DVVDIAQSDMKGFKEATAAILGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAIL 326
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM-- 326
PQADEVDV+L+ EDL+ID YRSGGSGGQHAN T+SAVR+THIPTG+ I+IQDERSQHM
Sbjct: 327 PQADEVDVQLKKEDLKIDFYRSGGSGGQHANKTSSAVRMTHIPTGIVIAIQDERSQHMVN 386
Query: 327 --------------------------------------------NKAKALKVLCAKLYEM 342
NKAKALKVLCAKLYE+
Sbjct: 387 YSKMAQCTCNFFYSEEGRQLRTWCTTLHVHWICVHSYVWCSYHLNKAKALKVLCAKLYEI 446
Query: 343 ERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF 402
ER+R+H SRSKLRS+QIGSGDRSERIRTYNFPQGRVTDHRVGIT+H I D+M+GE+LD F
Sbjct: 447 ERTRLHSSRSKLRSDQIGSGDRSERIRTYNFPQGRVTDHRVGITYHNIDDVMQGESLDAF 506
Query: 403 IDALLLQQEMDAIASFGST 421
IDALLL++EMDAIA+F S+
Sbjct: 507 IDALLLKEEMDAIATFRSS 525
>gi|356571023|ref|XP_003553681.1| PREDICTED: LOW QUALITY PROTEIN: peptide chain release factor 1-like
[Glycine max]
Length = 379
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 248/368 (67%), Positives = 294/368 (79%), Gaps = 12/368 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
LS +L+ IMEQR+ AIE +A N +NQPEASP+EY++AN EL KL S+ LI ELR K
Sbjct: 22 LSPELLNIMEQRLSAIEYMTASFNNFLNQPEASPSEYARANXELWKLSGSIDLIKELRGK 81
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
QKEIDGLKSLI ECSEDKDML+MATEE+ A++EE+RLQ+ LLKSLLPKDDAD+RDCILE
Sbjct: 82 QKEIDGLKSLIAECSEDKDMLNMATEEIGQAVEEERRLQNFLLKSLLPKDDADDRDCILE 141
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
VR GTGGEEASLFA+D+F+MYE+Y+ K GWKFEVV + +SDL+GY EASAAI+GVGV+GK
Sbjct: 142 VRPGTGGEEASLFAMDIFRMYEKYALKNGWKFEVVDIAQSDLKGYNEASAAIAGVGVFGK 201
Query: 237 LKFESGIHRVQ--RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
LKFESGIHRVQ R+ +TEKSG ++T+AVSVAILPQADEVDV+L++EDLRIDTYRSGGSG
Sbjct: 202 LKFESGIHRVQSLRILVTEKSGCINTNAVSVAILPQADEVDVQLKHEDLRIDTYRSGGSG 261
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQHANTTNSAVRVTHIPTG I+IQDE SQHM A K L K R +H S
Sbjct: 262 GQHANTTNSAVRVTHIPTGTMITIQDECSQHM--ASVSKYLARKACLWWRLELHFSLQTF 319
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
S + FPQGRVTDH VGIT+H++ D+M+GENL FIDALLLQ+EMDA
Sbjct: 320 CLS-------SPLLILGFFPQGRVTDHTVGITYHSVDDVMQGENL-XFIDALLLQEEMDA 371
Query: 415 IASFGSTQ 422
+A+F S+Q
Sbjct: 372 MATFSSSQ 379
>gi|224035189|gb|ACN36670.1| unknown [Zea mays]
Length = 301
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/301 (77%), Positives = 275/301 (91%)
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
++GLKSL+ E+KDM +MA EEL +A++EEKRLQ L +SLLPKD+ADE+DCILEVRA
Sbjct: 1 MEGLKSLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRA 60
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEASLFA+D+F+MYE+Y+QK GWKF+V+ + ES ++GYKEAS ISG G +GKLKF
Sbjct: 61 GTGGEEASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKF 120
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESGIHRVQRVP TEKSGR+HTSAVSVA+LPQADEVDV+LRNEDLRIDTYRSGGSGGQ N
Sbjct: 121 ESGIHRVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVN 180
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG ++IQDERSQHMNKAKALKVL A+LYE+ER R+H+ RSKLRSEQI
Sbjct: 181 TTDSAVRITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELERRRLHMDRSKLRSEQI 240
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GSGDRSERIRTYNFPQGRVTDHRVG+THH+I+D+MEGE+LD+F+DALLLQ+EMDAIASFG
Sbjct: 241 GSGDRSERIRTYNFPQGRVTDHRVGVTHHSIADVMEGESLDMFVDALLLQEEMDAIASFG 300
Query: 420 S 420
+
Sbjct: 301 A 301
>gi|168056816|ref|XP_001780414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668174|gb|EDQ54787.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 362
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/362 (64%), Positives = 296/362 (81%), Gaps = 2/362 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
++ I+E+ +LAIE R + L +++ A P E + +KEL KL D M I+ L+ +KEI
Sbjct: 1 MLSIVERGMLAIEHRHSRLNQALSESAACPDEIIRLSKELSKLEDLMACITSLKNTRKEI 60
Query: 121 DGLKSLIYECSEDKDMLDMATEEL-CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+GLK LI E +ED+DM A EEL ++ E + LQ +LL +LPKD+AD R CILEVRA
Sbjct: 61 EGLKMLIEESAEDEDMKQAAAEELRSVSNLETEDLQRMLLL-MLPKDEADSRGCILEVRA 119
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EASLFA D+F+MYERY+QKK W FEV+ +T+++ +GYKEASA+I+G GVYGKLKF
Sbjct: 120 GTGGDEASLFASDIFRMYERYAQKKLWSFEVLSITQTNSKGYKEASASITGDGVYGKLKF 179
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TEKSGRVHTSA SVA+LPQADEVDV++RNEDLRIDTYR+GG+GGQHAN
Sbjct: 180 ESGVHRVQRVPVTEKSGRVHTSAASVAVLPQADEVDVQMRNEDLRIDTYRAGGAGGQHAN 239
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVRVTH+PTG+ I+IQDERSQHMN+AK+LK+L AKL+E ER + ++RS LR EQI
Sbjct: 240 TTSSAVRVTHLPTGIVIAIQDERSQHMNRAKSLKLLRAKLFERERMQQAMARSTLRLEQI 299
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GSGDRSERIRTYNFPQGRVTDHRV IT H+I +M+GE LD FIDAL ++QE+ A+AS
Sbjct: 300 GSGDRSERIRTYNFPQGRVTDHRVNITQHSIVQIMQGEGLDGFIDALTMKQEIAALASLK 359
Query: 420 ST 421
+T
Sbjct: 360 AT 361
>gi|413917589|gb|AFW57521.1| hypothetical protein ZEAMMB73_731523 [Zea mays]
Length = 285
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 216/269 (80%), Positives = 250/269 (92%)
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
KRLQ L +SLLPKD+ADE+DCILEVRAGTGGEEASLFA+D+F+MYE+Y+QK GWKF+V+
Sbjct: 17 KRLQHELFRSLLPKDEADEKDCILEVRAGTGGEEASLFAMDIFRMYEKYAQKNGWKFDVI 76
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ES ++GYKEAS ISG G +GKLKFESGIHRVQRVP TEKSGR+HTSAVSVA+LPQA
Sbjct: 77 DIMESAVKGYKEASGTISGPGAFGKLKFESGIHRVQRVPATEKSGRMHTSAVSVAVLPQA 136
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
DEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+THIPTG ++IQDERSQHMNKAKA
Sbjct: 137 DEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHIPTGTVVAIQDERSQHMNKAKA 196
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LKVL A+LYE+ER R+H+ RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG+THH+I+
Sbjct: 197 LKVLRARLYELERRRLHMDRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGVTHHSIA 256
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFGS 420
D+MEGE+LD+F+DALLLQ+EMDAIASFG+
Sbjct: 257 DVMEGESLDMFVDALLLQEEMDAIASFGA 285
>gi|302785656|ref|XP_002974599.1| hypothetical protein SELMODRAFT_101651 [Selaginella moellendorffii]
gi|300157494|gb|EFJ24119.1| hypothetical protein SELMODRAFT_101651 [Selaginella moellendorffii]
Length = 386
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/363 (58%), Positives = 276/363 (76%), Gaps = 8/363 (2%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
+ +D+++I+E+R+++IE R ACL + +P + E K NKELRKL S+ +I LR K
Sbjct: 12 IPDDILRILEKRMISIEDRHACLSKALLEPGIASDELIKMNKELRKLDYSVDMIKALRAK 71
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+KE+ GLK L+ E ED++M +A+ EL A E + Q +L L+PKD+AD R CILE
Sbjct: 72 EKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLKLIPKDEADSRGCILE 131
Query: 177 VRA--------GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 228
G GG+EAS+FA D+FKMYE+Y+ W+FEV+ +T +D RGYKEASA I
Sbjct: 132 ASCLICFIYLLGAGGDEASIFASDLFKMYEKYAANNSWRFEVLSITTTDTRGYKEASAVI 191
Query: 229 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 288
SG VYG LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+EVDV +RN++++IDTY
Sbjct: 192 SGDDVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTY 251
Query: 289 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH 348
R+GG+GGQH NTT SAVRVTH PTG+ ++IQDERSQH NKAKAL +L A+LYE+ERSR
Sbjct: 252 RAGGAGGQHVNTTCSAVRVTHAPTGIVVAIQDERSQHKNKAKALSILYARLYELERSRAA 311
Query: 349 LSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
SRS+LR +QIGS DRSERIRTYNFPQGRVTDHRVG+T H+I +MEG L+IF++AL +
Sbjct: 312 ASRSELRQDQIGSSDRSERIRTYNFPQGRVTDHRVGVTQHSIEQIMEGIGLEIFVNALKM 371
Query: 409 QQE 411
Q E
Sbjct: 372 QHE 374
>gi|302759765|ref|XP_002963305.1| hypothetical protein SELMODRAFT_405087 [Selaginella moellendorffii]
gi|300168573|gb|EFJ35176.1| hypothetical protein SELMODRAFT_405087 [Selaginella moellendorffii]
Length = 927
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/344 (59%), Positives = 265/344 (77%), Gaps = 8/344 (2%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
+ +D+++I+E+R+++IE R ACL + +P + E K NKELRKL S+ +I LR K
Sbjct: 12 IPDDILRILEKRMISIEDRHACLSKALLEPGIASDELIKMNKELRKLDYSVDMIKALRAK 71
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+KE+ GLK L+ E ED++M +A+ EL A E + Q +L L+PKD+AD R
Sbjct: 72 EKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEADSR----- 126
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
G GG+EAS+FA D+FKMYE+Y+ W+FEV+ +T +D RGYKEASA ISG GVYG
Sbjct: 127 ---GAGGDEASIFASDLFKMYEKYTANNSWRFEVLSITTTDTRGYKEASAVISGDGVYGA 183
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+EVDV +RN++++IDTYR+GG+GGQ
Sbjct: 184 LKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTYRAGGAGGQ 243
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT SAVRVTH PTG+ ++IQDERSQH NKAKAL +L A+LYE+ERSR SRS+LR
Sbjct: 244 HVNTTCSAVRVTHAPTGIVVAIQDERSQHKNKAKALSILYARLYELERSRAAASRSELRQ 303
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLD 400
+QIGS DRSERIRTYNFPQGRVTDH+VG+T HAI +MEG ++D
Sbjct: 304 DQIGSSDRSERIRTYNFPQGRVTDHQVGVTQHAIEQIMEGIDVD 347
>gi|145362209|ref|NP_973706.2| Peptide chain release factor 1 [Arabidopsis thaliana]
gi|110735990|dbj|BAE99969.1| putative peptide chain release factor [Arabidopsis thaliana]
gi|330255694|gb|AEC10788.1| Peptide chain release factor 1 [Arabidopsis thaliana]
Length = 256
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/245 (81%), Positives = 229/245 (93%)
Query: 85 QPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144
QPE SP E+S+ANKELRKLRDSM LI++LR KQKEIDGLKSL+ E S+DKDMLD+A EL
Sbjct: 11 QPEYSPEEFSRANKELRKLRDSMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGEL 70
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
A++EEKRLQ+LLLKSLLPKD+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKK
Sbjct: 71 DEAVEEEKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKK 130
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
GWKF++V +TESD++GYKEASAAI G VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+S
Sbjct: 131 GWKFDIVDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAIS 190
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAILPQADEVDV+LRNEDLRIDTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQ
Sbjct: 191 VAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQ 250
Query: 325 HMNKA 329
HM+++
Sbjct: 251 HMSQS 255
>gi|302811530|ref|XP_002987454.1| hypothetical protein SELMODRAFT_426218 [Selaginella moellendorffii]
gi|300144860|gb|EFJ11541.1| hypothetical protein SELMODRAFT_426218 [Selaginella moellendorffii]
Length = 505
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 95 KANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL 154
K NKELR L S+ +I LR K+KE+ GLK L+ E ED++M +A+ EL A E +
Sbjct: 26 KMNKELRNLDYSVDMIKALRAKEKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDA 85
Query: 155 QSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT 214
Q +L L+PKD+AD R G GG+EAS+FA D+FKMYE+Y+ W+FEV+ +T
Sbjct: 86 QHDVLLELIPKDEADSR--------GAGGDEASIFASDLFKMYEKYAANNSWRFEVLSIT 137
Query: 215 ESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV 274
+D R YKEASAAISG GVYG LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+E+
Sbjct: 138 TTDTRCYKEASAAISGDGVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEI 197
Query: 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKV 334
DV +RN++++IDTYR+GG+GGQH NTT SAVRVTH PTG+ ++IQDERSQH NKAKAL +
Sbjct: 198 DVEIRNDEIKIDTYRAGGAGGQHVNTTCSAVRVTHAPTGIVVAIQDERSQHKNKAKALSI 257
Query: 335 LCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMM 394
L A+LYE+ERSR SRS+LR +QIGS DRSERIRTYNFPQGRVTD RVG+T HAI +M
Sbjct: 258 LYARLYELERSRAAASRSELRQDQIGSSDRSERIRTYNFPQGRVTDRRVGVTQHAIEQIM 317
Query: 395 EGENLD 400
EG ++D
Sbjct: 318 EGIDVD 323
>gi|302759755|ref|XP_002963300.1| hypothetical protein SELMODRAFT_405078 [Selaginella moellendorffii]
gi|300168568|gb|EFJ35171.1| hypothetical protein SELMODRAFT_405078 [Selaginella moellendorffii]
Length = 509
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/303 (61%), Positives = 237/303 (78%), Gaps = 8/303 (2%)
Query: 109 LISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDA 168
+I LR K+KE+ GLK L+ E ED++M +A+ EL A E + Q +L L+PKD+A
Sbjct: 1 MIKALRAKEKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEA 60
Query: 169 DERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 228
D R G GG+EAS+FA D+FKMY++Y+ W+FEV+ +T +D RGYKEASAAI
Sbjct: 61 DSR--------GAGGDEASIFASDLFKMYDKYAANNSWRFEVLSITTTDTRGYKEASAAI 112
Query: 229 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 288
SG GVYG LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+E+DV +RN++++IDTY
Sbjct: 113 SGDGVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEIDVEIRNDEIKIDTY 172
Query: 289 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH 348
R+GG+GGQH NTT SAVRVTH PTG+ ++IQDERSQH NKAKAL +L A+LYE+ERSR
Sbjct: 173 RAGGAGGQHVNTTCSAVRVTHTPTGIVVAIQDERSQHKNKAKALSILYARLYELERSRAV 232
Query: 349 LSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
SRS+LR +QIGS DRSERIRTYNFPQGRVTDHRVG+T HAI +MEG ++D +I L
Sbjct: 233 ASRSELRQDQIGSSDRSERIRTYNFPQGRVTDHRVGVTQHAIEQIMEGIDVDNWIPHLFE 292
Query: 409 QQE 411
+Q+
Sbjct: 293 RQD 295
>gi|339319955|ref|YP_004679650.1| protein chain release factor A [Candidatus Midichloria mitochondrii
IricVA]
gi|338226080|gb|AEI88964.1| protein chain release factor A [Candidatus Midichloria mitochondrii
IricVA]
Length = 359
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/348 (51%), Positives = 258/348 (74%), Gaps = 1/348 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
E+R+ I R +EN++ PEA S ++++K KE +L D +HLI+ ++EI L
Sbjct: 3 FEERLAKIIERYKYIENVLLAPEAMSSSDFAKLGKERAELSDVVHLINSYTQLKQEIADL 62
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++ I E + D D DMA EEL L ++ +++ L +LLPKD +++ ILE+RAGTGG
Sbjct: 63 EAAISEPNADIDFKDMALEELPLLQEKNEQVLHNLKLALLPKDADNDKGAILEIRAGTGG 122
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA +F+MY+RY++ K WKFE++ ++E+DL GYKEAS +ISG GV+ +LK+ESG+
Sbjct: 123 DEAALFAYVLFRMYQRYAESKRWKFEILSISETDLEGYKEASVSISGKGVFARLKYESGV 182
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE SGRVHTSA +VA+LP+A+EVD+ + +DL+ID YR+ G+GGQH NTT+S
Sbjct: 183 HRVQRVPETETSGRVHTSAATVAVLPEAEEVDITIEEKDLKIDVYRASGAGGQHVNTTDS 242
Query: 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGD 363
AVR+THIPTG+ + QDE+SQH NKA+ALK+L A+LY+ ERS+ R+ R Q+G+GD
Sbjct: 243 AVRITHIPTGIVVCQQDEKSQHKNKARALKILRARLYDAERSKKEAERAASRKSQVGTGD 302
Query: 364 RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
RSERIRTYN+PQ RVTDHR+ +T + + +++ LD FIDAL+ ++
Sbjct: 303 RSERIRTYNYPQSRVTDHRINLTVYTLDEIVNEGTLDQFIDALIADEQ 350
>gi|384250750|gb|EIE24229.1| protein chain release factor A [Coccomyxa subellipsoidea C-169]
Length = 345
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/339 (54%), Positives = 244/339 (71%), Gaps = 13/339 (3%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E + N EL +L ++ + L+ E GL+ L ED+DM +A EE + ++
Sbjct: 8 ELTALNVELGELTPAVEAYNALQRLLDEAKGLEGLT--SGEDEDMRKLAREEQQVLQEQV 65
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ LL LLP+D+ADER +LEVRAGTGG+EA+LFA D+F+MY+R+++ + WKFEV+
Sbjct: 66 PALEQALLDQLLPRDEADERGAVLEVRAGTGGDEAALFAGDLFRMYQRFAELRRWKFEVL 125
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ESD+ G+K ASA ++G G YG LK+ESGIHRVQRVP+TE SGRVHTSA SVA++PQA
Sbjct: 126 EMAESDVGGFKLASANVAGRGAYGSLKWESGIHRVQRVPVTESSGRVHTSAASVAVMPQA 185
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI----------QDE 321
DEVDV +++EDLRIDTYR+GG+GGQH NTTNSAVR+THIP+G+ ++I QDE
Sbjct: 186 DEVDVSVKDEDLRIDTYRAGGAGGQHVNTTNSAVRITHIPSGLVVAIQARHLVDAWWQDE 245
Query: 322 RSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFP-QGRVTD 380
RSQH NKAKALK+L A+L++ +R R +S R IGSGDRSERIRTYNFP QGRVTD
Sbjct: 246 RSQHKNKAKALKILRARLFDAQRQRQRAEQSSERKGLIGSGDRSERIRTYNFPQQGRVTD 305
Query: 381 HRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
HRVG+T H I ++ G +LD FIDAL + ++ G
Sbjct: 306 HRVGLTEHGIEGVLSGASLDTFIDALSTHHKQQLLSDLG 344
>gi|302759761|ref|XP_002963303.1| hypothetical protein SELMODRAFT_438470 [Selaginella moellendorffii]
gi|300168571|gb|EFJ35174.1| hypothetical protein SELMODRAFT_438470 [Selaginella moellendorffii]
Length = 391
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 187/361 (51%), Positives = 249/361 (68%), Gaps = 30/361 (8%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
+ +D+++I+E+R+++IE R ACL + +P + + K NKELR L S+ +I LR K
Sbjct: 43 IPDDILRILEKRMISIEDRHACLSEALLEPGIASEKLIKMNKELRNLDYSVDMIKALRAK 102
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+KE+ GLK L+ E ED++M +A+ EL A E + Q +L L+PKD+A
Sbjct: 103 EKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEA-------- 154
Query: 177 VRAGTGGEEASLFAVDVFKM------YERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
R+ G D+F + Y++Y+ W+FEV+ +T +D RGYKEASAAISG
Sbjct: 155 ARSRAGKCSLMCLMFDMFHLIFRSWRYDKYAANNSWRFEVLSITTTDTRGYKEASAAISG 214
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GVYG LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+EVDV +RN++++IDTYR+
Sbjct: 215 DGVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTYRA 274
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
GG+GGQH NTT SAVRVTH PTG+ ++IQD R LYE+ERSR S
Sbjct: 275 GGAGGQHVNTTCSAVRVTHAPTGIVVAIQDTR----------------LYELERSRAAAS 318
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+LR +QIGS DRSERIRTYNFPQGRVTDHRVG+T HAI +MEG L+IF++AL +Q
Sbjct: 319 RSELRQDQIGSSDRSERIRTYNFPQGRVTDHRVGVTQHAIEQIMEGIGLEIFVNALKMQH 378
Query: 411 E 411
E
Sbjct: 379 E 379
>gi|312115445|ref|YP_004013041.1| peptide chain release factor 1 [Rhodomicrobium vannielii ATCC
17100]
gi|311220574|gb|ADP71942.1| peptide chain release factor 1 [Rhodomicrobium vannielii ATCC
17100]
Length = 361
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 173/325 (53%), Positives = 243/325 (74%), Gaps = 1/325 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ K +KE L + I L ++E D L+ +I + + + DM ++A EEL A +
Sbjct: 32 FKKLSKEFSDLDPLVAAIKTLEAAEEERDSLRQMIEDPAAEPDMAELAREELEAAEPRVE 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD ADE+ ILEVRAGTGGEEA+LFA D+F+MY+RY+ KGWK V+
Sbjct: 92 QLEHELQIMLLPKDAADEKSAILEVRAGTGGEEAALFAADLFRMYQRYADLKGWKVNVLS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+++D G++E A+ISG GV+ ++KFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 VSDADAGGFREIVASISGKGVFARMKFESGVHRVQRVPETENQGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV +R +D+RIDT R+ G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH N+A+A+
Sbjct: 212 EVDVEIREQDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGIIVT-SSEKSQHQNRARAM 270
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL A+L++MER+RI +R+ R +QIGSGDRS+RIRTYNFPQGRVTDHRV +T + +
Sbjct: 271 QVLRARLFDMERTRIDEARAAERKDQIGSGDRSQRIRTYNFPQGRVTDHRVNVTLYNLPQ 330
Query: 393 MMEGENLDIFIDALLLQQEMDAIAS 417
+MEGE LD IDAL+ +++ +A+
Sbjct: 331 IMEGEGLDTIIDALITERQAGQLAA 355
>gi|347530046|ref|YP_004836794.1| peptide chain release factor 1 [Sphingobium sp. SYK-6]
gi|345138728|dbj|BAK68337.1| peptide chain release factor 1 [Sphingobium sp. SYK-6]
Length = 359
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 252/363 (69%), Gaps = 13/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEY---SKANKELRKLRDSMHLISELRTKQ 117
+ I R+ AI RR ++ + +P+ PAE+ SK EL + + +++LRT+Q
Sbjct: 1 MTTISPDRIAAILRRQEEVQAQMARPDLDPAEFVRLSKDYAELEPVVTAAREVAQLRTEQ 60
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
E++ + + D +M MA EE+ + + L +LLP+D ADER +LE+
Sbjct: 61 SELEAMLA-------DPEMKAMAQEEIEAVRERLPEAEHALAIALLPRDAADERAAMLEI 113
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA+LFA D+ +MY+RY++ +GW+ E++ + S+ G+KE A++SG GV+ +L
Sbjct: 114 RAGTGGDEAALFAGDLLRMYQRYAESRGWRVEIISASASEAGGFKEVIASVSGAGVFARL 173
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE--DLRIDTYRSGGSGG 295
KFESG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV++ NE DLRID YRS G+GG
Sbjct: 174 KFESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVQI-NEATDLRIDVYRSSGAGG 232
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+PTG+ ++ QDE+SQH NKAKALKVL A+LYE ER R ++ R
Sbjct: 233 QHVNTTDSAVRITHLPTGIVVTQQDEKSQHKNKAKALKVLRARLYEAERERTQSEQAGAR 292
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG LD I AL+ Q E +
Sbjct: 293 KAMVGSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLDEMISALIAQDEAARL 352
Query: 416 ASF 418
A
Sbjct: 353 AQL 355
>gi|407783435|ref|ZP_11130636.1| peptide chain release factor 1 [Oceanibaculum indicum P24]
gi|407202160|gb|EKE72155.1| peptide chain release factor 1 [Oceanibaculum indicum P24]
Length = 358
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 172/326 (52%), Positives = 236/326 (72%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ + +KE +L + I+ LR + E DGL ++ + S D +M MA EEL L D
Sbjct: 32 FQRMSKEYAELEAVVESINALRAGEAERDGLVQMLADPSTDAEMKTMAEEELALLEDRLT 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD+ADE++ ILEVRAGTGG+EA LFA ++F+MY RY+ GW+FEV+
Sbjct: 92 ELEQAVKIALLPKDEADEKNAILEVRAGTGGDEAGLFAAELFEMYRRYAALHGWRFEVME 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+E+D+ G KE A I+G V+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 VSENDVGGMKEGIATITGANVFARLKYESGVHRVQRVPATENQGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV + ++DLRID +R+ G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQ NK KA+
Sbjct: 212 EVDVHIEDKDLRIDVFRASGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKSQLRNKQKAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K+L ++LY++ER ++ RS R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T H I
Sbjct: 272 KILLSRLYDLERGKLDAERSAARKSQVGSGDRSERIRTYNFPQGRVTDHRIGLTLHKIEK 331
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
+M GE LD IDAL + + + +A
Sbjct: 332 VMLGEALDEVIDALTAEDQAERLAEL 357
>gi|344924573|ref|ZP_08778034.1| peptide chain release factor RF-1 [Candidatus Odyssella
thessalonicensis L13]
Length = 360
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 177/330 (53%), Positives = 243/330 (73%), Gaps = 1/330 (0%)
Query: 79 LENLVNQPEAS-PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L +++ + E S P E+ + +KE + + I E+R ++EI L+++I + D +M
Sbjct: 17 LRDILAKSEMSDPKEFGRLSKEYSDMTPVVEAIEEVRKTEREIQDLEAMIADKDMDAEMR 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+ A +EL ++ + + LLPKD+ADER+ ILEVRAGTGGEEA LFA D+F+MY
Sbjct: 77 EFAKQELEQLKEKLPHQEHQIKILLLPKDEADERNAILEVRAGTGGEEAGLFAADLFRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+R++ +GWKFEV+ + E+ L KEASA+I G GV+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 QRFAANQGWKFEVLSLNETGLGAIKEASASIMGKGVFSRLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+A+EVD+ + +DL+ID YR+ G+GGQH NTT+SAVR+THIP+G+ ++
Sbjct: 197 IHTSAATVAVLPEAEEVDIHIDEKDLQIDVYRASGAGGQHVNTTDSAVRITHIPSGIVVT 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDERSQH N+AKA+KVL A+LYE ER R + RS R QIGSGDRSERIRTYNFPQGR
Sbjct: 257 QQDERSQHKNRAKAMKVLRARLYEAERLRKEMERSANRRNQIGSGDRSERIRTYNFPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALL 407
VTDHR+ +T + I +MEGE L+ I+ L+
Sbjct: 317 VTDHRINLTLYKIDLIMEGECLNEMIEVLI 346
>gi|157827554|ref|YP_001496618.1| peptide chain release factor 1 [Rickettsia bellii OSU 85-389]
gi|166223596|sp|A8GXI1.1|RF1_RICB8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157802858|gb|ABV79581.1| peptide chain release factor 1 [Rickettsia bellii OSU 85-389]
Length = 357
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 173/320 (54%), Positives = 236/320 (73%), Gaps = 1/320 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE L D + I E + E++ + E S DK L+M EE+ D
Sbjct: 32 EFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFKQEPSLDKATLEMIEEEIRNLEDSL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD+AD + I+E+RAGTGGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 92 PTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAALFAAKLFNMYQRYAELKGWRFEIL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ E+ + GYKE SA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEV 211
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VD++L +DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 212 EDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 271
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R EQIGSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 272 LKILRARIYEEERRKKDQERANNRREQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 331
Query: 392 DMMEGENLDIFIDALLLQQE 411
+++ G+ LD FI+AL+ E
Sbjct: 332 EVINGQ-LDEFIEALIANDE 350
>gi|341583910|ref|YP_004764401.1| peptide chain release factor 1 [Rickettsia heilongjiangensis 054]
gi|340808136|gb|AEK74724.1| peptide chain release factor 1 [Rickettsia heilongjiangensis 054]
Length = 355
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 176/357 (49%), Positives = 253/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKGQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R QIGSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>gi|157828568|ref|YP_001494810.1| peptide chain release factor 1 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933282|ref|YP_001650071.1| peptide chain release factor 1 [Rickettsia rickettsii str. Iowa]
gi|378721380|ref|YP_005286267.1| peptide chain release factor 1 [Rickettsia rickettsii str.
Colombia]
gi|378722726|ref|YP_005287612.1| peptide chain release factor 1 [Rickettsia rickettsii str. Arizona]
gi|378724083|ref|YP_005288967.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hauke]
gi|379016361|ref|YP_005292596.1| peptide chain release factor 1 [Rickettsia rickettsii str. Brazil]
gi|379017869|ref|YP_005294104.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hino]
gi|379018974|ref|YP_005295208.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hlp#2]
gi|379712443|ref|YP_005300782.1| peptide chain release factor 1 [Rickettsia philipii str. 364D]
gi|166223598|sp|A8GSC7.1|RF1_RICRS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039987|sp|B0BXT9.1|RF1_RICRO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157801049|gb|ABV76302.1| peptide chain release factor 1 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908369|gb|ABY72665.1| bacterial peptide chain release factor 1 (RF-1) [Rickettsia
rickettsii str. Iowa]
gi|376324885|gb|AFB22125.1| peptide chain release factor 1 [Rickettsia rickettsii str. Brazil]
gi|376326404|gb|AFB23643.1| peptide chain release factor 1 [Rickettsia rickettsii str.
Colombia]
gi|376327750|gb|AFB24988.1| peptide chain release factor 1 [Rickettsia rickettsii str. Arizona]
gi|376329088|gb|AFB26325.1| peptide chain release factor 1 [Rickettsia philipii str. 364D]
gi|376330435|gb|AFB27671.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hino]
gi|376331554|gb|AFB28788.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hlp#2]
gi|376333098|gb|AFB30331.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hauke]
Length = 355
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 254/357 (71%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + +R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQARADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRIHLTLYKIDEVVKNGQLDEFVEALIADDE 348
>gi|350273567|ref|YP_004884880.1| peptide chain release factor RF-1 [Rickettsia japonica YH]
gi|348592780|dbj|BAK96741.1| peptide chain release factor RF-1 [Rickettsia japonica YH]
Length = 355
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 176/357 (49%), Positives = 252/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E+ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELKEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKGQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R QIGSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>gi|91205113|ref|YP_537468.1| peptide chain release factor 1 [Rickettsia bellii RML369-C]
gi|119361596|sp|Q1RJT5.1|RF1_RICBR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91068657|gb|ABE04379.1| Peptide chain release factor RF-1 [Rickettsia bellii RML369-C]
Length = 357
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 172/320 (53%), Positives = 236/320 (73%), Gaps = 1/320 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE L D + I E + E++ + E S DK L+M EE+ D
Sbjct: 32 EFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFKQEPSLDKATLEMIEEEIRNLEDSL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD+AD + I+E+RAGTGGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 92 PTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAALFAAKLFNMYQRYAELKGWRFEIL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ E+ + GYKE SA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEV 211
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VD++L +DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 212 EDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 271
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R +QIGSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 272 LKILRARIYEEERRKKDQERANNRRKQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 331
Query: 392 DMMEGENLDIFIDALLLQQE 411
+++ G+ LD FI+AL+ E
Sbjct: 332 EVINGQ-LDEFIEALIANDE 350
>gi|157825817|ref|YP_001493537.1| peptide chain release factor 1 [Rickettsia akari str. Hartford]
gi|166223595|sp|A8GNQ4.1|RF1_RICAH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157799775|gb|ABV75029.1| peptide chain release factor 1 [Rickettsia akari str. Hartford]
Length = 355
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 169/320 (52%), Positives = 238/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L M +E+ + +
Sbjct: 29 EFVKASKEYAELEDVVVKIKEYNKAKSELEEANNFKLELGFDNATLAMIEDEIHILENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER R+ R QIGSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRNKEQERADSRRGQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD FI+AL+ + E
Sbjct: 329 EVVKNGQLDEFIEALIAEDE 348
>gi|148555445|ref|YP_001263027.1| peptide chain release factor 1 [Sphingomonas wittichii RW1]
gi|166223608|sp|A5V9C3.1|RF1_SPHWW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148500635|gb|ABQ68889.1| bacterial peptide chain release factor 1 (bRF-1) [Sphingomonas
wittichii RW1]
Length = 360
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 252/358 (70%), Gaps = 6/358 (1%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I R+ IE R L+ L+ + + ++ + +K+ ++ E+R + E+D L
Sbjct: 4 ITSARIAQIEARRDELQALMARGDLPSDQFVQLSKDYAEIEPVAQAAGEVRRLRAELDVL 63
Query: 124 KSLIYECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
K + + + D ++ MA EE+ + E +R +L LK LLP+D ADER +LE+RAG
Sbjct: 64 KGMAEDEAGDAELRAMAIEEAEEIRARLPEAER--ALALK-LLPRDAADERSAMLEIRAG 120
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GW+ E++ + +DL GYKE A+++G GV+ +LKFE
Sbjct: 121 TGGDEAALFAGDLFRMYQRYAEDRGWRVELISASAADLGGYKEVVASVTGAGVFARLKFE 180
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV + ++DLRID YRS G GGQ NT
Sbjct: 181 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVHIDDKDLRIDVYRSSGPGGQSVNT 240
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+TH+PTG+ + QDE+SQH NKAKALKVL +LYEMER R+ R+ R +G
Sbjct: 241 TDSAVRITHLPTGLVVIQQDEKSQHKNKAKALKVLRTRLYEMERERLASERAGARKSMVG 300
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYNFPQGRVTDHR+ +T H +S+++EG LD + AL+ + E + +A
Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLHRLSEILEGPGLDDLVGALIAEDEAERLAQL 358
>gi|265999301|ref|ZP_05465736.2| peptide chain release factor 1 [Brucella melitensis bv. 2 str.
63/9]
gi|384212220|ref|YP_005601304.1| peptide chain release factor 1 [Brucella melitensis M5-90]
gi|384409325|ref|YP_005597946.1| peptide chain release factor 1 [Brucella melitensis M28]
gi|384445866|ref|YP_005604585.1| peptide chain release factor 1 [Brucella melitensis NI]
gi|17982074|gb|AAL51373.1| bacterial peptide chain release factor 1 (rf-1) [Brucella
melitensis bv. 1 str. 16M]
gi|263093126|gb|EEZ17261.1| peptide chain release factor 1 [Brucella melitensis bv. 2 str.
63/9]
gi|326409872|gb|ADZ66937.1| peptide chain release factor 1 [Brucella melitensis M28]
gi|326539585|gb|ADZ87800.1| peptide chain release factor 1 [Brucella melitensis M5-90]
gi|349743855|gb|AEQ09398.1| peptide chain release factor 1 [Brucella melitensis NI]
Length = 377
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 260/369 (70%), Gaps = 11/369 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 306
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEGE LD +DAL+
Sbjct: 307 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGE-LDELVDALISDH 365
Query: 411 EMDAIASFG 419
+ +A G
Sbjct: 366 QTALLAELG 374
>gi|392378185|ref|YP_004985344.1| peptide chain release factor 1 [Azospirillum brasilense Sp245]
gi|356879666|emb|CCD00592.1| peptide chain release factor 1 [Azospirillum brasilense Sp245]
Length = 357
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 176/325 (54%), Positives = 236/325 (72%), Gaps = 6/325 (1%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
PA++++ +KE L I+EL+ + E L +I + + D DM +A EE D
Sbjct: 28 PADFARLSKEYADLTPVAEAIAELKKAKAEAADLAGMIADPAGDADMKALAEEEFG---D 84
Query: 150 EEKRLQSLLLK---SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
+R+ +L + SLLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MY RY+ +GW
Sbjct: 85 LTRRIPALERRVQISLLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGLQGW 144
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
+FE + V+E+ + GYKEA A I+G V+ +LKFESG+HRVQRVP TE GR+HTSA +VA
Sbjct: 145 RFETMEVSETGIGGYKEAIANITGRNVFARLKFESGVHRVQRVPATETQGRIHTSAATVA 204
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A+EVD+ + +DLRID +RS G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQH
Sbjct: 205 VLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKSQHK 264
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
NKAKALKVL A+LYE ER+ +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T
Sbjct: 265 NKAKALKVLRARLYERERAEKDKARAADRKSQVGSGDRSERIRTYNFPQGRVTDHRINLT 324
Query: 387 HHAISDMMEGENLDIFIDALLLQQE 411
+ I +M GE LD IDAL + E
Sbjct: 325 LYKIEKVMAGEALDELIDALTAEDE 349
>gi|383501663|ref|YP_005415022.1| peptide chain release factor 1 [Rickettsia australis str. Cutlack]
gi|378932674|gb|AFC71179.1| peptide chain release factor 1 [Rickettsia australis str. Cutlack]
Length = 355
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 237/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVVVKIKEYNKAKSELEEANNFKLEVGLDNTTLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADNKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRNKEQERADSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD F++AL+ E
Sbjct: 329 EVVKNGQLDEFVEALIADDE 348
>gi|294851112|ref|ZP_06791785.1| peptide chain release factor 1 [Brucella sp. NVSL 07-0026]
gi|294819701|gb|EFG36700.1| peptide chain release factor 1 [Brucella sp. NVSL 07-0026]
Length = 377
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 260/369 (70%), Gaps = 11/369 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMSDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 306
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+
Sbjct: 307 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDH 365
Query: 411 EMDAIASFG 419
+ +A G
Sbjct: 366 QTALLAELG 374
>gi|237816235|ref|ZP_04595228.1| peptide chain release factor 1 [Brucella abortus str. 2308 A]
gi|260758776|ref|ZP_05871124.1| peptide chain release factor 1 [Brucella abortus bv. 4 str. 292]
gi|260884577|ref|ZP_05896191.1| peptide chain release factor 1 [Brucella abortus bv. 9 str. C68]
gi|297247116|ref|ZP_06930834.1| peptide chain release factor 1 [Brucella abortus bv. 5 str. B3196]
gi|376272411|ref|YP_005150989.1| peptide chain release factor 1 [Brucella abortus A13334]
gi|237788302|gb|EEP62517.1| peptide chain release factor 1 [Brucella abortus str. 2308 A]
gi|260669094|gb|EEX56034.1| peptide chain release factor 1 [Brucella abortus bv. 4 str. 292]
gi|260874105|gb|EEX81174.1| peptide chain release factor 1 [Brucella abortus bv. 9 str. C68]
gi|297174285|gb|EFH33632.1| peptide chain release factor 1 [Brucella abortus bv. 5 str. B3196]
gi|363400017|gb|AEW16987.1| peptide chain release factor 1 [Brucella abortus A13334]
Length = 377
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 260/369 (70%), Gaps = 11/369 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 306
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+
Sbjct: 307 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDH 365
Query: 411 EMDAIASFG 419
+ +A G
Sbjct: 366 QTALLAELG 374
>gi|376275535|ref|YP_005115974.1| peptide chain release factor 1 [Brucella canis HSK A52141]
gi|363404102|gb|AEW14397.1| peptide chain release factor 1 [Brucella canis HSK A52141]
Length = 372
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 260/369 (70%), Gaps = 11/369 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 8 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 65
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 66 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 122
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 123 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 182
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 183 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 242
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 243 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 301
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+
Sbjct: 302 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDH 360
Query: 411 EMDAIASFG 419
+ +A G
Sbjct: 361 QTALLAELG 369
>gi|402496738|ref|YP_006555998.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Onchocerca ochengi]
gi|398650011|emb|CCF78181.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Onchocerca ochengi]
Length = 373
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/373 (47%), Positives = 258/373 (69%), Gaps = 15/373 (4%)
Query: 56 MLSNDLIKIMEQRVLAIERRSACLENLVNQPE--------ASPAEYSKANKELRKLRDSM 107
ML ++KI++ + IE L+ N E S E+ +KE +LR +
Sbjct: 1 MLFTKVVKILDLSYMDIENNLQDLKKKFNDIERKLGNPINLSQKEFINFSKEYSELRPII 60
Query: 108 HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK----RLQSLLLKSLL 163
+I E T +KEI LK ++ + + + D+ ++A EE ++++K ++++ L +LL
Sbjct: 61 KIIDEYNTLKKEISDLKEILKDENSEYDIKELAKEEF---LEKQKVLLPKVKAKLKLALL 117
Query: 164 PKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKE 223
P D+ D R+ ILE+RAGTGGEEA+LFA +F+MY++Y++K+ WKFE + ++ + + GYKE
Sbjct: 118 PTDEDDSRNAILEIRAGTGGEEAALFAAMLFRMYQKYAEKRNWKFEPINISSTGIGGYKE 177
Query: 224 ASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDL 283
ASA ++G V+ +LKFESG+HRVQRVP TE SGR+HTSA +VAILP+ +EVD ++ +DL
Sbjct: 178 ASALVNGTEVFARLKFESGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDL 237
Query: 284 RIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEME 343
RID YRS G GGQ NTT+SAVRVTH+PTG+ + QDE+SQH NKAKA KVL A+LYE+E
Sbjct: 238 RIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVVIQQDEKSQHKNKAKAFKVLRARLYEIE 297
Query: 344 RSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFI 403
R + + RS +R QIGSGDRSERIRTYNFPQ R+TDHR+ +T H + +++ LD FI
Sbjct: 298 RQKKKIERSTMRKSQIGSGDRSERIRTYNFPQSRITDHRINLTSHRLEQIIKEGELDEFI 357
Query: 404 DALLLQQEMDAIA 416
+AL+ + E + +A
Sbjct: 358 EALISRNEAERLA 370
>gi|148558947|ref|YP_001259697.1| peptide chain release factor 1 [Brucella ovis ATCC 25840]
gi|265987430|ref|ZP_06099987.1| peptide chain release factor 1 [Brucella pinnipedialis M292/94/1]
gi|148370204|gb|ABQ60183.1| peptide chain release factor 1 [Brucella ovis ATCC 25840]
gi|264659627|gb|EEZ29888.1| peptide chain release factor 1 [Brucella pinnipedialis M292/94/1]
Length = 377
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 260/369 (70%), Gaps = 11/369 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 306
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+
Sbjct: 307 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDH 365
Query: 411 EMDAIASFG 419
+ +A G
Sbjct: 366 QTALLAELG 374
>gi|353327645|ref|ZP_08969972.1| peptide chain release factor 1 [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 363
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 248/345 (71%), Gaps = 7/345 (2%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140
NL N S E+ +KE +LR + +I E ++EI L+ ++ + + D D+ ++A
Sbjct: 20 NLENPTNLSQKEFVSFSKEYSELRPIIEIIDEYNILKEEISDLEEIMKDENSDGDIKELA 79
Query: 141 TEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
EEL ++++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+LFA +F+M
Sbjct: 80 KEEL---LEKQKILLPKVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAALFAAMLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQRVP TE SG
Sbjct: 137 YQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VAILP+ +EVD + +DLRID YRS G GGQ NTT+SAVRVTH+PTG+ +
Sbjct: 197 RLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVV 256
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
QDE+SQH NKAKALKVL A+LYE+ER + + RS +R QIGSGDRSERIRTYNFPQ
Sbjct: 257 IQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKSQIGSGDRSERIRTYNFPQS 316
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
R+TDHR+ +T H + +++ LD FI+AL+ + E + + G+
Sbjct: 317 RITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLTGGGNV 361
>gi|190570518|ref|YP_001974876.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019274|ref|ZP_03335081.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|238054477|sp|B3CL87.1|RF1_WOLPP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|190356790|emb|CAQ54152.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995383|gb|EEB56024.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 363
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 248/345 (71%), Gaps = 7/345 (2%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140
NL N S E+ +KE +LR + +I E ++EI L+ ++ + + D D+ ++A
Sbjct: 20 NLENPTNLSQKEFVSFSKEYSELRPIIEIIDEYNILKEEISDLEEIMKDENSDGDIKELA 79
Query: 141 TEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
EEL ++++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+LFA +F+M
Sbjct: 80 KEEL---LEKQKIVLPKVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAALFAAMLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQRVP TE SG
Sbjct: 137 YQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VAILP+ +EVD + +DLRID YRS G GGQ NTT+SAVRVTH+PTG+ +
Sbjct: 197 RLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVV 256
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
QDE+SQH NKAKALKVL A+LYE+ER + + RS +R QIGSGDRSERIRTYNFPQ
Sbjct: 257 IQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKSQIGSGDRSERIRTYNFPQS 316
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
R+TDHR+ +T H + +++ LD FI+AL+ + E + + G+
Sbjct: 317 RITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLTGGGNV 361
>gi|373450051|ref|ZP_09542126.1| peptide chain release factor 1 [Wolbachia pipientis wAlbB]
gi|371932744|emb|CCE77114.1| peptide chain release factor 1 [Wolbachia pipientis wAlbB]
Length = 363
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 248/345 (71%), Gaps = 7/345 (2%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140
NL N S E+ +KE +LR + +I E ++EI L+ ++ + + D D+ ++A
Sbjct: 20 NLENPTNLSQKEFVSFSKEYSELRPIIEIIDEYNMLKEEISDLEEIMKDENSDGDIKELA 79
Query: 141 TEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
EEL ++++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+LFA +F+M
Sbjct: 80 KEEL---LEKQKILLPKVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAALFAAMLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQRVP TE SG
Sbjct: 137 YQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VAILP+ +EVD + +DLRID YRS G GGQ NTT+SAVRVTH+PTG+ +
Sbjct: 197 RLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVV 256
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
QDE+SQH NKAKALKVL A+LYE+ER + + RS +R QIGSGDRSERIRTYNFPQ
Sbjct: 257 IQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKSQIGSGDRSERIRTYNFPQS 316
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
R+TDHR+ +T H + +++ LD FI+AL+ + E + + G+
Sbjct: 317 RITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLTGGGNV 361
>gi|288956982|ref|YP_003447323.1| peptide chain release factor RF-1 [Azospirillum sp. B510]
gi|288909290|dbj|BAI70779.1| peptide chain release factor RF-1 [Azospirillum sp. B510]
Length = 361
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/336 (52%), Positives = 236/336 (70%), Gaps = 4/336 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY----ECSEDKDMLDMATEE 143
A ++++ +KE L I+EL+ + E L +I + D +M MA EE
Sbjct: 26 AESGDFARLSKEYADLTPIAAAIAELKRGRAEAADLAEMIAAMMGDSGADPEMRSMAEEE 85
Query: 144 LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQK 203
L L+ + SLLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MY RY+
Sbjct: 86 FHLLTKRIPELERKVQISLLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGL 145
Query: 204 KGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAV 263
GW+FE + V+E+ + GYKEA+A I+G GV+ KLKFESG+HRVQRVP TE GR+HTSA
Sbjct: 146 HGWRFEAMDVSETGIGGYKEATANITGRGVFAKLKFESGVHRVQRVPATEAQGRIHTSAA 205
Query: 264 SVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERS 323
+VA+LP+A+EVD+ + +DLRID +RS G GGQ NTT+SAVR+TH+PTG+ +S QDE+S
Sbjct: 206 TVAVLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKS 265
Query: 324 QHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRV 383
QH NKAKALKVL A+LY+ ER+ +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+
Sbjct: 266 QHKNKAKALKVLRARLYDRERAEKDAARAADRKNQVGSGDRSERIRTYNFPQGRVTDHRI 325
Query: 384 GITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+T + I +M GE LD +DAL+ + E +A G
Sbjct: 326 NLTLYKIDKVMAGEALDELVDALVAEDEAARLAELG 361
>gi|338741716|ref|YP_004678678.1| peptide chain release factor 1 [Hyphomicrobium sp. MC1]
gi|337762279|emb|CCB68114.1| peptide chain release factor 1 [Hyphomicrobium sp. MC1]
Length = 384
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 182/372 (48%), Positives = 252/372 (67%), Gaps = 13/372 (3%)
Query: 51 SYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQ--PEASPAEYSKANKELRKLRDSMH 108
S S L D + + +R +AI+ +L+N P+A E+ K +KE +L +
Sbjct: 23 SDSMSALPRDKLDRLSERYMAIQ-------DLMNHGVPQA---EFVKLSKEFSELGPVVA 72
Query: 109 LISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDA 168
I LR + E L+ +I + S DK+M+D+A E + L+ L +LLPKD A
Sbjct: 73 QIDALRKAEAESADLEQMINDPSADKEMVDLAYAERASLAERITELEQQLRIALLPKDAA 132
Query: 169 DERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 228
DE+ ILEVRAGTGG+EA+LFA D+F+MY RY+ GWK E++ +E+DL GYKE A+I
Sbjct: 133 DEKSAILEVRAGTGGDEAALFAADLFRMYTRYADLHGWKTEIISASENDLGGYKEIIASI 192
Query: 229 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 288
+G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+DV +R ED+RIDT
Sbjct: 193 TGSGVFARLKFESGVHRVQRVPATEASGRIHTSAATVAVLPEAEELDVDIRPEDIRIDTM 252
Query: 289 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH 348
R+GG+GGQH N T+SAVR+THIPTG+ + + E+SQH N+ A+ VL +++YEMER R
Sbjct: 253 RAGGAGGQHVNKTDSAVRMTHIPTGIVV-VSAEKSQHQNRRLAMAVLKSRIYEMERERAA 311
Query: 349 LSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
RS R Q+GSGDRS+RIRTYNFPQGRVTDHR+ +T + + ++M G LD IDAL+
Sbjct: 312 TERSDARKSQVGSGDRSQRIRTYNFPQGRVTDHRINLTLYNLDEVMTGNGLDELIDALIT 371
Query: 409 QQEMDAIASFGS 420
+ +A +
Sbjct: 372 DHQATMLAELSA 383
>gi|265993634|ref|ZP_06106191.1| peptide chain release factor 1 [Brucella melitensis bv. 3 str.
Ether]
gi|262764615|gb|EEZ10536.1| peptide chain release factor 1 [Brucella melitensis bv. 3 str.
Ether]
Length = 372
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 184/372 (49%), Positives = 261/372 (70%), Gaps = 14/372 (3%)
Query: 55 EML---SNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLI 110
EML +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I
Sbjct: 5 EMLQFPGHDMIALPQDRMDQLLKRFSMIESQMANNPDSD--SYVKLASEYSELQDVVGKI 62
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDD 167
EL + E L ++ + S D +M +A EEL + EKR+ L + LLPKD
Sbjct: 63 RELSDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDA 119
Query: 168 ADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAA 227
AD+++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A
Sbjct: 120 ADDKNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIAT 179
Query: 228 ISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDT 287
+SG GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT
Sbjct: 180 VSGKGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDT 239
Query: 288 YRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRI 347
R+ G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 240 MRASGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKA 298
Query: 348 HLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEGE LD +DAL+
Sbjct: 299 ESERSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGE-LDELVDALI 357
Query: 408 LQQEMDAIASFG 419
+ +A G
Sbjct: 358 SDHQTALLAELG 369
>gi|418055329|ref|ZP_12693384.1| Peptide chain release factor 1 [Hyphomicrobium denitrificans 1NES1]
gi|353210911|gb|EHB76312.1| Peptide chain release factor 1 [Hyphomicrobium denitrificans 1NES1]
Length = 359
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 171/332 (51%), Positives = 233/332 (70%), Gaps = 1/332 (0%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
S A+Y K KE +L + I LR + E L+ LI + S DKDM+D+A E
Sbjct: 28 SQAQYVKLTKEFAELSPAAAQIEALRKAEAESADLEQLIRDPSADKDMVDLAYAERATLA 87
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
L+ L +LLPKD ADE+ ILEVRAGTGG+EA+LFA D+F+MY RY+ KGWK
Sbjct: 88 SRIGELEQQLRIALLPKDAADEKSAILEVRAGTGGDEAALFAADLFRMYSRYADLKGWKV 147
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +E+DL GYKE A+I+G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+L
Sbjct: 148 EVISASENDLGGYKEIIASITGEGVFARLKFESGVHRVQRVPATEASGRIHTSAATVAVL 207
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
P+A++V++ ++ ED+RIDT R+GG+GGQH N T SAVR+TH+PTG+ + + E+SQH N+
Sbjct: 208 PEAEDVEIDIKPEDIRIDTMRAGGAGGQHVNKTESAVRITHLPTGIVV-VSAEKSQHQNR 266
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
A+ VL A++YE+ER + RS R Q+GSGDRS+RIRTYNFPQGRVTDHR+ +T +
Sbjct: 267 RLAMNVLKARVYELEREKAASERSDARKSQVGSGDRSQRIRTYNFPQGRVTDHRINLTLY 326
Query: 389 AISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+ ++M G LD +DAL+ + +A +
Sbjct: 327 NLDEVMAGNGLDTLVDALITDHQATMLAELNA 358
>gi|225630064|ref|YP_002726855.1| peptide chain release factor 1 [Wolbachia sp. wRi]
gi|225592045|gb|ACN95064.1| peptide chain release factor 1 [Wolbachia sp. wRi]
Length = 357
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 177/359 (49%), Positives = 254/359 (70%), Gaps = 12/359 (3%)
Query: 65 MEQRVLAIERRSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
ME + ++++ +E NL N S E+ +KE +LR + +I E T ++EI L
Sbjct: 1 MENNLQDLKKKFNDIERNLENPTNLSQKEFITLSKEYSELRPIIKIIDEYNTLKEEISDL 60
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEK------RLQSLLLKSLLPKDDADERDCILEV 177
+ ++ + + + D+ ++A EE EK ++++ L +LLPKD+ D R+ ILE+
Sbjct: 61 EEIMKDENSEGDIKELAKEEFF-----EKHKVLLPKIKAKLKLALLPKDEDDSRNAILEI 115
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEA+LFA +F+MY++Y++++ WKFE + ++ + + GYKEASA I+G V+ +L
Sbjct: 116 RAGTGGEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARL 175
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE SGR+HTSA +VAILP+ +EVD ++ +DLRID YRS G GGQ
Sbjct: 176 KFESGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQS 235
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVRVTH+PTG+ + QDE+SQH NKAKALKVL A+LYE+ER + + RS +R
Sbjct: 236 VNTTDSAVRVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKS 295
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
QIGSGDRSERIRTYNFPQ R+TDHR+ +T H + +++ LD FI+AL+ + E + +A
Sbjct: 296 QIGSGDRSERIRTYNFPQSRITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLA 354
>gi|42520141|ref|NP_966056.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58698355|ref|ZP_00373269.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|81652805|sp|Q73IC2.1|RF1_WOLPM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|42409878|gb|AAS13990.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58535109|gb|EAL59194.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 359
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 177/359 (49%), Positives = 254/359 (70%), Gaps = 12/359 (3%)
Query: 65 MEQRVLAIERRSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
ME + ++++ +E NL N S E+ +KE +LR + +I E T ++EI L
Sbjct: 3 MENNLQDLKKKFNDIERNLENPTNLSQKEFITLSKEYSELRPIIKIIDEYNTLKEEISDL 62
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEK------RLQSLLLKSLLPKDDADERDCILEV 177
+ ++ + + + D+ ++A EE EK ++++ L +LLPKD+ D R+ ILE+
Sbjct: 63 EEIMKDENSEGDIKELAKEEFF-----EKHKVLLPKIKAKLKLALLPKDEDDSRNAILEI 117
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEA+LFA +F+MY++Y++++ WKFE + ++ + + GYKEASA I+G V+ +L
Sbjct: 118 RAGTGGEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARL 177
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE SGR+HTSA +VAILP+ +EVD ++ +DLRID YRS G GGQ
Sbjct: 178 KFESGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQS 237
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVRVTH+PTG+ + QDE+SQH NKAKALKVL A+LYE+ER + + RS +R
Sbjct: 238 VNTTDSAVRVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKS 297
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
QIGSGDRSERIRTYNFPQ R+TDHR+ +T H + +++ LD FI+AL+ + E + +A
Sbjct: 298 QIGSGDRSERIRTYNFPQSRITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLA 356
>gi|261323819|ref|ZP_05963016.1| peptide chain release factor 1 [Brucella neotomae 5K33]
gi|261299799|gb|EEY03296.1| peptide chain release factor 1 [Brucella neotomae 5K33]
Length = 372
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 180/369 (48%), Positives = 260/369 (70%), Gaps = 11/369 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 8 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 65
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E + ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 66 SDARMEASDVAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 122
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 123 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 182
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 183 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 242
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 243 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 301
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+
Sbjct: 302 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDH 360
Query: 411 EMDAIASFG 419
+ +A G
Sbjct: 361 QTALLAELG 369
>gi|306844842|ref|ZP_07477425.1| peptide chain release factor 1 [Brucella inopinata BO1]
gi|306274774|gb|EFM56555.1| peptide chain release factor 1 [Brucella inopinata BO1]
Length = 359
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/363 (49%), Positives = 257/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|225628073|ref|ZP_03786108.1| peptide chain release factor 1 [Brucella ceti str. Cudo]
gi|261220926|ref|ZP_05935207.1| peptide chain release factor 1 [Brucella ceti B1/94]
gi|225616898|gb|EEH13945.1| peptide chain release factor 1 [Brucella ceti str. Cudo]
gi|260919510|gb|EEX86163.1| peptide chain release factor 1 [Brucella ceti B1/94]
Length = 377
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 180/369 (48%), Positives = 259/369 (70%), Gaps = 11/369 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSTLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 306
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+
Sbjct: 307 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDH 365
Query: 411 EMDAIASFG 419
+ +A G
Sbjct: 366 QTALLAELG 374
>gi|265996886|ref|ZP_06109443.1| peptide chain release factor 1 [Brucella ceti M490/95/1]
gi|262551354|gb|EEZ07344.1| peptide chain release factor 1 [Brucella ceti M490/95/1]
Length = 372
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 180/369 (48%), Positives = 259/369 (70%), Gaps = 11/369 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 8 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 65
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 66 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 122
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 123 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 182
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 183 KGVFSTLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 242
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 243 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 301
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+
Sbjct: 302 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDH 360
Query: 411 EMDAIASFG 419
+ +A G
Sbjct: 361 QTALLAELG 369
>gi|374293217|ref|YP_005040252.1| peptide chain release factor 1 [Azospirillum lipoferum 4B]
gi|357425156|emb|CBS88039.1| peptide chain release factor 1 [Azospirillum lipoferum 4B]
Length = 374
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 176/333 (52%), Positives = 236/333 (70%), Gaps = 4/333 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY----ECSEDKDMLDMATEELCL 146
++++ +KE L I+EL+ + E L +I + S D +M MA EE L
Sbjct: 42 GDFARLSKEYADLTPIAEAIAELKKGRAEAADLAEMISAMMGDPSADPEMKAMAEEEFHL 101
Query: 147 AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
L+ + SLLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MY RY+ GW
Sbjct: 102 LAKRIPDLERKVQISLLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGLHGW 161
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
+FE + V+E+ + GYKEA+A I+G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA
Sbjct: 162 RFEAMDVSETGIGGYKEATANITGRGVFARLKFESGVHRVQRVPATEAQGRIHTSAATVA 221
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A+EVD+ + +DLRID +RS G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQH
Sbjct: 222 VLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKSQHK 281
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
NKAKALKVL A+LY+ ER+ +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T
Sbjct: 282 NKAKALKVLRARLYDRERAEKDAARAADRKNQVGSGDRSERIRTYNFPQGRVTDHRINLT 341
Query: 387 HHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ I +M GE LD IDAL+ + E +A G
Sbjct: 342 LYKIDKVMAGEALDELIDALVSEDEAARLAELG 374
>gi|254472406|ref|ZP_05085806.1| peptide chain release factor 1 [Pseudovibrio sp. JE062]
gi|374328358|ref|YP_005078542.1| peptide chain release factor 1 [Pseudovibrio sp. FO-BEG1]
gi|211958689|gb|EEA93889.1| peptide chain release factor 1 [Pseudovibrio sp. JE062]
gi|359341146|gb|AEV34520.1| Peptide chain release factor 1 [Pseudovibrio sp. FO-BEG1]
Length = 357
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/334 (51%), Positives = 240/334 (71%), Gaps = 6/334 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELC 145
+P Y K +++ +L + I ELR + +++G ++L+ + D +M ++A +EL
Sbjct: 26 APDVYIKLSRDYAELEPIVMSIRELRKAEGDLEGAEALLSDPDSDAEMKELAQLERDELT 85
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
++E L + LLPKD AD D ILEVRAGTGG+EA+LFA D+F+MY+R++ G
Sbjct: 86 GVVEE---LTQKVRIGLLPKDKADSHDVILEVRAGTGGDEAALFAGDLFRMYQRFADNNG 142
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
WK EV+ +E D+ G+KE AA++G V+GKLKFESG+HRVQRVP TE GR+HTSA +V
Sbjct: 143 WKVEVMSSSEGDMGGFKEIVAAVTGQEVFGKLKFESGVHRVQRVPETESGGRIHTSAATV 202
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A+LPQA+EVDV + DLRIDTYR+ G+GGQH NTT+SAVR+TH PTG+ +++QDERSQH
Sbjct: 203 AVLPQAEEVDVDINPADLRIDTYRASGAGGQHVNTTDSAVRITHNPTGIVVAVQDERSQH 262
Query: 326 MNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGI 385
NK +A+K+L AK+Y++ER R R++ R Q+GSGDRSERIRTYNFPQGRVTDHR+G+
Sbjct: 263 KNKDRAMKLLRAKIYDVERERAANERTEARRVQVGSGDRSERIRTYNFPQGRVTDHRIGL 322
Query: 386 THHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
T + + MM GE IDAL + + + +A+ G
Sbjct: 323 TLYKLDQMMTGEATGEVIDALTMDHQANLLAAEG 356
>gi|161511164|ref|NP_539109.2| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M]
gi|225853308|ref|YP_002733541.1| peptide chain release factor 1 [Brucella melitensis ATCC 23457]
gi|260562790|ref|ZP_05833276.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M]
gi|20139330|sp|Q8YJ95.2|RF1_BRUME RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790867|sp|C0RFB5.1|RF1_BRUMB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|225641673|gb|ACO01587.1| peptide chain release factor 1 [Brucella melitensis ATCC 23457]
gi|260152806|gb|EEW87898.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M]
Length = 359
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEGE LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGE-LDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|144897745|emb|CAM74609.1| peptide chain release factor RF-1 [Magnetospirillum gryphiswaldense
MSR-1]
Length = 352
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/324 (52%), Positives = 234/324 (72%), Gaps = 4/324 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+++ +KE + +H + L+ + ++ ++++ D DM D+A EE +
Sbjct: 29 FARLSKEFSDIEPVVHAVQALKKARADMAEAEAMM----ADPDMKDLAAEEYYALKETLP 84
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLPKD+ADE++ ILEVRAGTGGEEA+LFA ++F+MYERY+ +GW+FEV+
Sbjct: 85 GLERDVQLMLLPKDEADEKNAILEVRAGTGGEEAALFAAELFRMYERYASVRGWRFEVMD 144
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V E+ + G KEASA I+G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VAI+P+A+
Sbjct: 145 VNETGIGGMKEASATITGRGVFARLKFESGVHRVQRVPATESGGRIHTSAATVAIMPEAE 204
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVD+++ ++DLR D YRS GSGGQ NTT+SAVRVTHIPTG+ ++ Q E+SQH NKA A+
Sbjct: 205 EVDIQIDDKDLRFDVYRSQGSGGQSVNTTDSAVRVTHIPTGLAVACQQEKSQHKNKATAM 264
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K+L A+LYEMER+ R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + I D
Sbjct: 265 KLLRARLYEMERASKAAERAANRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKIDD 324
Query: 393 MMEGENLDIFIDALLLQQEMDAIA 416
MM G LD DAL+ + + +A
Sbjct: 325 MMNGTALDEVADALIAADQAERLA 348
>gi|58584615|ref|YP_198188.1| peptide chain release factor 1 [Wolbachia endosymbiont strain TRS
of Brugia malayi]
gi|75497913|sp|Q5GSS8.1|RF1_WOLTR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|58418931|gb|AAW70946.1| Protein chain release factor A [Wolbachia endosymbiont strain TRS
of Brugia malayi]
Length = 359
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/349 (51%), Positives = 251/349 (71%), Gaps = 13/349 (3%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
IER+ LEN N S E+ +KE +LR + +I+E T +KEI L+ +I + +
Sbjct: 17 IERK---LENPTN---LSQKEFINLSKEYSELRPIIKIINEYDTLKKEILDLEEIIKDEN 70
Query: 132 EDKDMLDMATEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+ D+ ++A EE +++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+
Sbjct: 71 SEYDIKELAKEEF---FEKQKVLLPQVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAA 127
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA +F+MY++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQ
Sbjct: 128 LFAAMLFRMYQKYAERRNWKFEPISISSTGIGGYKEASALINGTEVFARLKFESGVHRVQ 187
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE SGR+HTSA +VAILP+ +EVD ++ +DLRID YRS G GGQ NTT+SAVRV
Sbjct: 188 RVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNTTDSAVRV 247
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PT M + QDE+SQH NKAKALKVL A+LYE+ER + + RS +R QIGSGDRSER
Sbjct: 248 THLPTEMVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEIERSTMRKSQIGSGDRSER 307
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
IRTYNFPQ R+TDHR+ +T H + +++ LD FI+ L+ + E + +A
Sbjct: 308 IRTYNFPQSRITDHRINLTSHQLEQIIKEGELDEFIEVLISRNEAERLA 356
>gi|395785827|ref|ZP_10465555.1| peptide chain release factor 1 [Bartonella tamiae Th239]
gi|423717278|ref|ZP_17691468.1| peptide chain release factor 1 [Bartonella tamiae Th307]
gi|395424285|gb|EJF90472.1| peptide chain release factor 1 [Bartonella tamiae Th239]
gi|395427493|gb|EJF93584.1| peptide chain release factor 1 [Bartonella tamiae Th307]
Length = 360
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/348 (49%), Positives = 250/348 (71%), Gaps = 5/348 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + ++R++ +E+R +E+ + N P+A Y K E +L+ + I L +E
Sbjct: 1 MVALPQERMIQVEKRFEMIESQMTNSPDADL--YVKLASEYAELQPIVGPIRALNAAYQE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+ L++++ + S DK+M +A EEL RL+ + LLPKD AD++ ILE+RA
Sbjct: 59 VLDLEAMLEDKSTDKEMRALAEEELPTIRQNISRLEQEVQILLLPKDAADDKSAILEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ GWK E+V +E D+ GYKE A +SG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYASANGWKVEMVSASEGDVGGYKEIIATVSGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIDIRQEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+L++MER R RS+ R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLFDMERQRAESERSQSRKSQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYN+PQGRV+DHR+ +T + + +M GE LD F+DAL+
Sbjct: 298 GSGDRSERIRTYNYPQGRVSDHRINLTLYKLDKVMMGE-LDEFVDALI 344
>gi|265982882|ref|ZP_06095617.1| peptide chain release factor 1 [Brucella sp. 83/13]
gi|306838261|ref|ZP_07471111.1| peptide chain release factor 1 [Brucella sp. NF 2653]
gi|264661474|gb|EEZ31735.1| peptide chain release factor 1 [Brucella sp. 83/13]
gi|306406664|gb|EFM62893.1| peptide chain release factor 1 [Brucella sp. NF 2653]
Length = 359
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 257/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD ++AL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVNALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|254504878|ref|ZP_05117029.1| peptide chain release factor 1 [Labrenzia alexandrii DFL-11]
gi|222440949|gb|EEE47628.1| peptide chain release factor 1 [Labrenzia alexandrii DFL-11]
Length = 357
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 250/343 (72%), Gaps = 1/343 (0%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
R A LE++++ PA Y K ++E L + I L ++++ G + LI + + D
Sbjct: 13 RFAELEHMMS-ANPDPASYVKLSREYAGLEPLVLKIRALVKAEEDLKGAEDLIEDPATDP 71
Query: 135 DMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVF 194
+M ++A E + +RL + LLPKD+AD D ILEVRAGTGG+EA+LFA D+F
Sbjct: 72 EMRELAELERDELSENVERLTQDVRIGLLPKDEADTNDAILEVRAGTGGDEAALFAGDLF 131
Query: 195 KMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEK 254
+MY+RY++ +GWK E++ +E ++ G+KE A++SG V+ +LKFESG+HRVQRVP TE
Sbjct: 132 RMYQRYAELRGWKVEILSASEGEVGGFKEVIASVSGENVFARLKFESGVHRVQRVPATES 191
Query: 255 SGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGM 314
GR+HTSA +VA+LPQA+ VD+ +++ DLRIDT+R+ G+GGQH NTT+SAVR+THIPTG+
Sbjct: 192 GGRIHTSAATVAVLPQAENVDIDVQDSDLRIDTFRASGAGGQHVNTTDSAVRITHIPTGI 251
Query: 315 TISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFP 374
+++QDERSQH NKA+A+++L A++Y+ ER R R++ R Q+GSGDRSERIRTYNFP
Sbjct: 252 VVAVQDERSQHKNKARAMQLLRARIYDEERERAASERTEARRLQVGSGDRSERIRTYNFP 311
Query: 375 QGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
QGRVTDHR+G+T + + ++ GE+LD I+AL+L + + +AS
Sbjct: 312 QGRVTDHRIGLTLYKLDQIIAGESLDEVIEALILDYQANLLAS 354
>gi|451940354|ref|YP_007460992.1| peptide chain release factor 1 [Bartonella australis Aust/NH1]
gi|451899741|gb|AGF74204.1| peptide chain release factor 1 [Bartonella australis Aust/NH1]
Length = 359
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/348 (51%), Positives = 249/348 (71%), Gaps = 5/348 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +LR + I L T KE
Sbjct: 1 MVSLPQDRMKKLEKRFEVIESQMAENPNAEI--YVKLASEYAELRPIVAPIRILNTAYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I LK++I + D +M +A EE+ L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IKELKTIIDDTQTDPEMRTLAQEEMPLLYQKIEQLERELQILLLPKDIADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK E+V ++ES++ GYKE A+ISG GV+ KLKF
Sbjct: 119 GTGGLEAALFAGDLFRMYERYASAHNWKVEIVSLSESEVGGYKEIIASISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+DV +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDVEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+ +AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRVRALQILRARLFDIERRKAASERSASRKTQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD FIDAL+
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDEFIDALI 344
>gi|154252199|ref|YP_001413023.1| peptide chain release factor 1 [Parvibaculum lavamentivorans DS-1]
gi|171769599|sp|A7HTY3.1|RF1_PARL1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|154156149|gb|ABS63366.1| peptide chain release factor 1 [Parvibaculum lavamentivorans DS-1]
Length = 355
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 162/286 (56%), Positives = 219/286 (76%)
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+DM +MA EE+ +E RL+ + LLPKD AD+R+ ILEVRAGTGG+EA+LFA D+
Sbjct: 67 RDMAEMAKEEIARLNEELPRLEHEVQLMLLPKDAADDRNVILEVRAGTGGDEAALFAGDL 126
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYERY+ +GWK E++ +E ++ GYKE A ISG GVY KLKFESG+HRVQRVP+TE
Sbjct: 127 FRMYERYASNQGWKVELIAASEGEMGGYKEIIAGISGPGVYAKLKFESGVHRVQRVPVTE 186
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GR+HTSA +VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR+TH+PTG
Sbjct: 187 GGGRIHTSAATVAVLPEAEEVDVEIEDKDLRIDVYRASGAGGQHVNKTESAVRITHLPTG 246
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ ++ QDE+SQH NKA+A+++L A++++ ER R+ RS R Q+GSGDRSERIRTYNF
Sbjct: 247 IVVAQQDEKSQHKNKARAMQILRARIFDAERERLDRERSAARKGQVGSGDRSERIRTYNF 306
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
PQ RVTDHR+ +T H + ++EGE L IDAL+ + + +A+ G
Sbjct: 307 PQSRVTDHRINLTLHKLDQVLEGEALGELIDALIAEDQAARLAAMG 352
>gi|62290730|ref|YP_222523.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. 9-941]
gi|82700642|ref|YP_415216.1| peptide chain release factor 1 [Brucella melitensis biovar Abortus
2308]
gi|189024940|ref|YP_001935708.1| peptide chain release factor 1 [Brucella abortus S19]
gi|260545992|ref|ZP_05821732.1| peptide chain release factor 1 [Brucella abortus NCTC 8038]
gi|260760500|ref|ZP_05872843.1| peptide chain release factor 1 [Brucella abortus bv. 2 str.
86/8/59]
gi|261214824|ref|ZP_05929105.1| peptide chain release factor 1 [Brucella abortus bv. 3 str. Tulya]
gi|261315085|ref|ZP_05954282.1| peptide chain release factor 1 [Brucella pinnipedialis M163/99/10]
gi|423168151|ref|ZP_17154854.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI435a]
gi|423169473|ref|ZP_17156148.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI474]
gi|423175537|ref|ZP_17162206.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI486]
gi|423177613|ref|ZP_17164258.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI488]
gi|423178906|ref|ZP_17165547.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI010]
gi|423182037|ref|ZP_17168674.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI016]
gi|423187021|ref|ZP_17173635.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI021]
gi|423190543|ref|ZP_17177151.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI259]
gi|75496230|sp|Q57B22.1|RF1_BRUAB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361513|sp|Q2YLN8.1|RF1_BRUA2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238689404|sp|B2S825.1|RF1_BRUA1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|62196862|gb|AAX75162.1| PrfA, peptide chain release factor 1 [Brucella abortus bv. 1 str.
9-941]
gi|82616743|emb|CAJ11828.1| Class I peptide chain release factor domain:Peptide chain release
factor 1:PCRF domain [Brucella melitensis biovar Abortus
2308]
gi|189020512|gb|ACD73234.1| Class I peptide chain release factor domain protein [Brucella
abortus S19]
gi|260096099|gb|EEW79975.1| peptide chain release factor 1 [Brucella abortus NCTC 8038]
gi|260670932|gb|EEX57753.1| peptide chain release factor 1 [Brucella abortus bv. 2 str.
86/8/59]
gi|260916431|gb|EEX83292.1| peptide chain release factor 1 [Brucella abortus bv. 3 str. Tulya]
gi|261304111|gb|EEY07608.1| peptide chain release factor 1 [Brucella pinnipedialis M163/99/10]
gi|374535981|gb|EHR07502.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI486]
gi|374539900|gb|EHR11403.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI435a]
gi|374543152|gb|EHR14635.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI474]
gi|374549201|gb|EHR20645.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI488]
gi|374551850|gb|EHR23279.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI016]
gi|374552222|gb|EHR23650.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI010]
gi|374554313|gb|EHR25724.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI259]
gi|374557733|gb|EHR29129.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI021]
Length = 359
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|383312620|ref|YP_005365421.1| peptide chain release factor 1 [Candidatus Rickettsia amblyommii
str. GAT-30V]
gi|378931280|gb|AFC69789.1| peptide chain release factor 1 [Candidatus Rickettsia amblyommii
str. GAT-30V]
Length = 355
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 254/357 (71%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L+KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLVKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSLSKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIADKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERANS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>gi|334345900|ref|YP_004554452.1| peptide chain release factor 1 [Sphingobium chlorophenolicum L-1]
gi|334102522|gb|AEG49946.1| Peptide chain release factor 1 [Sphingobium chlorophenolicum L-1]
Length = 363
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/359 (47%), Positives = 247/359 (68%), Gaps = 2/359 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P E+ + +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPEEFVRLSKEYAEIEPVARAAHEVRRLRQELS 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + L LLPKD AD R +LE+RA
Sbjct: 61 ALEYMAGGEDADADPLMREMAQEEMQLIKSRLPDAERALALQLLPKDAADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S++ GYKE A+++GVGV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADAQGWKMELISANASEVGGYKEVVASVTGVGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VA+LP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+P+G+ ++ QDERSQH NKAKA++VL A++YE+ER R ++ R +
Sbjct: 241 TTDSAVRITHLPSGIVVTQQDERSQHKNKAKAMQVLRARIYEVERERAQSEQAGARKAMV 300
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL+ + E +A
Sbjct: 301 GSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLSEVIDALVAEDEAARLAQL 359
>gi|23502722|ref|NP_698849.1| peptide chain release factor 1 [Brucella suis 1330]
gi|161619787|ref|YP_001593674.1| peptide chain release factor 1 [Brucella canis ATCC 23365]
gi|256370269|ref|YP_003107780.1| peptide chain release factor 1 [Brucella microti CCM 4915]
gi|260567639|ref|ZP_05838109.1| peptide chain release factor 1 [Brucella suis bv. 4 str. 40]
gi|261217701|ref|ZP_05931982.1| peptide chain release factor 1 [Brucella ceti M13/05/1]
gi|261316358|ref|ZP_05955555.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94]
gi|261321452|ref|ZP_05960649.1| peptide chain release factor 1 [Brucella ceti M644/93/1]
gi|261751020|ref|ZP_05994729.1| peptide chain release factor 1 [Brucella suis bv. 5 str. 513]
gi|261755581|ref|ZP_05999290.1| peptide chain release factor 1 [Brucella suis bv. 3 str. 686]
gi|340791460|ref|YP_004756925.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94]
gi|376281517|ref|YP_005155523.1| peptide chain release factor 1 [Brucella suis VBI22]
gi|384225509|ref|YP_005616673.1| peptide chain release factor 1 [Brucella suis 1330]
gi|32171563|sp|Q8FYK3.1|RF1_BRUSU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039960|sp|A9M8K5.1|RF1_BRUC2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|23348737|gb|AAN30764.1| peptide chain release factor 1 [Brucella suis 1330]
gi|161336598|gb|ABX62903.1| peptide chain release factor 1 [Brucella canis ATCC 23365]
gi|256000432|gb|ACU48831.1| peptide chain release factor 1 [Brucella microti CCM 4915]
gi|260157157|gb|EEW92237.1| peptide chain release factor 1 [Brucella suis bv. 4 str. 40]
gi|260922790|gb|EEX89358.1| peptide chain release factor 1 [Brucella ceti M13/05/1]
gi|261294142|gb|EEX97638.1| peptide chain release factor 1 [Brucella ceti M644/93/1]
gi|261295581|gb|EEX99077.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94]
gi|261740773|gb|EEY28699.1| peptide chain release factor 1 [Brucella suis bv. 5 str. 513]
gi|261745334|gb|EEY33260.1| peptide chain release factor 1 [Brucella suis bv. 3 str. 686]
gi|340559919|gb|AEK55157.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94]
gi|343383689|gb|AEM19181.1| peptide chain release factor 1 [Brucella suis 1330]
gi|358259116|gb|AEU06851.1| peptide chain release factor 1 [Brucella suis VBI22]
Length = 359
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|94496666|ref|ZP_01303242.1| peptide chain release factor 1 [Sphingomonas sp. SKA58]
gi|94424026|gb|EAT09051.1| peptide chain release factor 1 [Sphingomonas sp. SKA58]
Length = 361
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/357 (47%), Positives = 243/357 (68%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P ++ + +KE ++ ELR ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPDQFVRLSKEYAEIEPVAAAARELRRLRQELA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ + D M DMA EE+ L + + L LLP+D AD R +LE+RAGT
Sbjct: 61 ALEMMTGGEEADPAMRDMAQEEMQLLKSQLPAAERALALQLLPRDAADARPAMLEIRAGT 120
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MY+RY+ +GWK E++ S+ G+KE A+I+G GV+ KLKFES
Sbjct: 121 GGDEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGAGVFAKLKFES 180
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ +EVDV++ + DL+ID YR+ G+GGQH NTT
Sbjct: 181 GVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADADLKIDIYRASGAGGQHVNTT 240
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+TH+PTG+ ++ QDERSQH NKAKA++VL A+LYE ER R ++ R +GS
Sbjct: 241 DSAVRITHVPTGIVVTQQDERSQHKNKAKAMQVLRARLYEAERERTQNEQAGARKAMVGS 300
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL + E +A
Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLSEVIDALTAEDEAARLAQL 357
>gi|157803730|ref|YP_001492279.1| peptide chain release factor 1 [Rickettsia canadensis str. McKiel]
gi|166223597|sp|A8EYR1.1|RF1_RICCK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157784993|gb|ABV73494.1| peptide chain release factor 1 [Rickettsia canadensis str. McKiel]
Length = 355
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 166/325 (51%), Positives = 236/325 (72%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L + + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEEVVEKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW FE++
Sbjct: 89 PKLERAVKIALLPKDEADSKSAIIEVRAGSGGEEAALFAAILFNMYQRYAELKGWHFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ++ + GYKEASA+I G V+ KLK ESG+HRVQR+P TE GR+HTSA +VA+LP+
Sbjct: 149 AIVDTGIGGYKEASASIKGKDVFSKLKCESGVHRVQRIPETESHGRIHTSAATVAVLPEV 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VD++L ++DLRIDTYRS G+GGQH NTTNSAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EDVDIKLEDKDLRIDTYRSSGAGGQHVNTTNSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQKRANNRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQEMDAIA 416
++++ LD F+DAL+ E +A
Sbjct: 329 EVVKNGQLDEFVDALIADDEAKKLA 353
>gi|379022896|ref|YP_005299557.1| peptide chain release factor 1 [Rickettsia canadensis str. CA410]
gi|376323834|gb|AFB21075.1| peptide chain release factor 1 [Rickettsia canadensis str. CA410]
Length = 355
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 166/325 (51%), Positives = 236/325 (72%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L + + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEEVVEKIKEYNKAKSELEEANNFKLEVELDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW FE++
Sbjct: 89 PKLERAVKIALLPKDEADSKSAIIEVRAGSGGEEAALFAAILFNMYQRYAELKGWHFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ++ + GYKEASA+I G V+ KLK ESG+HRVQR+P TE GR+HTSA +VA+LP+
Sbjct: 149 AIVDTGIGGYKEASASIKGKDVFSKLKCESGVHRVQRIPETESHGRIHTSAATVAVLPEV 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VD++L ++DLRIDTYRS G+GGQH NTTNSAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EDVDIKLEDKDLRIDTYRSSGAGGQHVNTTNSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQKRANNRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQEMDAIA 416
++++ LD F+DAL+ E +A
Sbjct: 329 EVVKNGQLDEFVDALIADDEAKKLA 353
>gi|222149911|ref|YP_002550868.1| peptide chain release factor 1 [Agrobacterium vitis S4]
gi|254790856|sp|B9JT13.1|RF1_AGRVS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|221736893|gb|ACM37856.1| peptide chain release factor 1 [Agrobacterium vitis S4]
Length = 359
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 182/353 (51%), Positives = 247/353 (69%), Gaps = 13/353 (3%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+ERR +E ++ A PA Y K E +L+ + I EL +KE+ LK+L+ +
Sbjct: 12 LERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVKAIRELGLAEKEVADLKALLAD 68
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEA 186
S D++M D+A EL D E RL+ L + LLPKD ADE+ ILE+RAGTGG EA
Sbjct: 69 KSTDREMRDLAEMELP---DVEARLEGLEKEIQIQLLPKDAADEKSAILEIRAGTGGSEA 125
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA D+F+MYER++ KGWK EV+ +E D G+KE A ++G GV+ KLKFESG+HRV
Sbjct: 126 ALFAGDLFRMYERFAAGKGWKVEVLSSSEGDAGGFKEIIATVTGRGVFSKLKFESGVHRV 185
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR
Sbjct: 186 QRVPDTETQGRIHTSAATVAVLPEAEEIDIEVRAEDIRIDTMRSSGAGGQHVNTTDSAVR 245
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ ++ E+SQH N+AKA++VL ++L++MER R RS R Q+GSGDRSE
Sbjct: 246 ITHLPTGLVVT-SSEKSQHQNRAKAMQVLRSRLFDMERQRADSERSADRKSQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RIRTYNFPQGRVTDHR+ +T + + MM GE +D +DAL+ + +A G
Sbjct: 305 RIRTYNFPQGRVTDHRINLTLYKLDRMMMGE-IDEVVDALIADYQAGQLAQLG 356
>gi|83592089|ref|YP_425841.1| peptide chain release factor 1 [Rhodospirillum rubrum ATCC 11170]
gi|386348788|ref|YP_006047036.1| peptide chain release factor 1 [Rhodospirillum rubrum F11]
gi|119361593|sp|Q2RWE1.1|RF1_RHORT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|83575003|gb|ABC21554.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodospirillum
rubrum ATCC 11170]
gi|346717224|gb|AEO47239.1| peptide chain release factor 1 [Rhodospirillum rubrum F11]
Length = 354
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 171/328 (52%), Positives = 239/328 (72%), Gaps = 4/328 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ + ++EL L + I L + E+ G ++L+ +D DM D+A EE+ E
Sbjct: 31 FVRMSRELADLAPVVEAIGRLDDAKAELAGARALL----DDPDMRDLAREEVLRLEAEIP 86
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLP+D+AD+R ILEVRAGTGG+EA+LFA D+ +MYERY+Q++GW+FEV+
Sbjct: 87 ALEHGVKLLLLPRDEADDRGVILEVRAGTGGDEAALFAGDLLRMYERYAQERGWRFEVME 146
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+++D+ G KEASAAISG GV+ +LKFESG+HRVQRVP+TE GR+HTSA +VA+LP+A+
Sbjct: 147 ASDTDIGGIKEASAAISGRGVFARLKFESGVHRVQRVPVTEGGGRIHTSAATVAVLPEAE 206
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV + +DLRIDTYRS G+GGQH NTT+SAVR+TH+P+G+ QDE+SQH NKAKA+
Sbjct: 207 EVDVEIEEKDLRIDTYRSQGAGGQHVNTTDSAVRITHLPSGVVAQCQDEKSQHKNKAKAM 266
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
++L KLY+ R +R++ R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T H + +
Sbjct: 267 RMLRTKLYDHARQTADDARAEARRVQVGSGDRSERIRTYNFPQGRVTDHRIGLTLHRLPE 326
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFGS 420
++ G LD I+ L+ + + +A G
Sbjct: 327 VLAGTALDEVIEPLIAEDQATRMAEIGG 354
>gi|300025029|ref|YP_003757640.1| peptide chain release factor 1 [Hyphomicrobium denitrificans ATCC
51888]
gi|299526850|gb|ADJ25319.1| peptide chain release factor 1 [Hyphomicrobium denitrificans ATCC
51888]
Length = 359
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 168/332 (50%), Positives = 233/332 (70%), Gaps = 1/332 (0%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
S A+Y K KE +L + I LR + E L+ L+ + S DKDM D+A E
Sbjct: 28 SQAQYVKLTKEFAELSPAAAQIEALRKAEAESADLEQLLRDPSADKDMADLAYAERAALA 87
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
+ L+ L +LLPKD ADE+ ILEVRAGTGG+EA+LFA D+F+MY RY+ +GWK
Sbjct: 88 ERIGGLEQQLRIALLPKDAADEKSAILEVRAGTGGDEAALFAADLFRMYSRYADLRGWKV 147
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +E+DL GYKE A+I+G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+L
Sbjct: 148 EVISASENDLGGYKEIVASITGEGVFARLKFESGVHRVQRVPATEASGRIHTSAATVAVL 207
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
P+A++V++ ++ +D+RIDT R+GG+GGQH N T SAVR+TH+PTG+ + + E+SQH N+
Sbjct: 208 PEAEDVEIDIKPDDIRIDTMRAGGAGGQHVNKTESAVRITHLPTGIVV-VSAEKSQHQNR 266
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
A+ VL A++YE+ER + RS R Q+GSGDRS+RIRTYNFPQGRVTDHR+ +T +
Sbjct: 267 RLAMNVLKARVYELEREKAATERSDARKSQVGSGDRSQRIRTYNFPQGRVTDHRINLTLY 326
Query: 389 AISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+ ++M G LD +DAL+ + +A +
Sbjct: 327 NLDEVMVGNGLDALVDALITDHQATMLAELNA 358
>gi|304321558|ref|YP_003855201.1| peptide chain release factor 1 [Parvularcula bermudensis HTCC2503]
gi|303300460|gb|ADM10059.1| peptide chain release factor 1 [Parvularcula bermudensis HTCC2503]
Length = 360
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 168/327 (51%), Positives = 238/327 (72%), Gaps = 5/327 (1%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + ++ L+++ R + +GL S D +M +MA EE+ + +R
Sbjct: 34 SKEHAELKPVAEAALLLTDARQGLLDAEGLTK-----STDPEMAEMAKEEIASLTGQIER 88
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ L LLPKD AD+ ILEVRAGTGG+EA+LFA D+F+MY+RY+ +GW+ E++
Sbjct: 89 LEADLQLMLLPKDKADQAPVILEVRAGTGGDEAALFAGDLFRMYQRYAATRGWRVEILSA 148
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
TES + GYKE A +SG V+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+ ++
Sbjct: 149 TESGVGGYKEIQANVSGDNVFGRLKFESGVHRVQRVPETETQGRIHTSAATVAVLPEPED 208
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
+D+ ++ DLRID +R+ G GGQ NTT+SAVR+THIPTG+ +S QDE+SQH N+AKA+K
Sbjct: 209 IDIDIQESDLRIDVFRASGPGGQSVNTTDSAVRITHIPTGVVVSQQDEKSQHKNRAKAMK 268
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
VL A+LYE ERSR+ R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +
Sbjct: 269 VLRARLYEAERSRVAAERAAERKGQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDKV 328
Query: 394 MEGENLDIFIDALLLQQEMDAIASFGS 420
+ GE +D IDAL+++ + + +A+ S
Sbjct: 329 IAGEAVDDLIDALIVEDQAERLAAMES 355
>gi|404316530|ref|ZP_10964463.1| peptide chain release factor 1 [Ochrobactrum anthropi CTS-325]
Length = 357
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L++ + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSET--YVKLASEYSELQEVVGKIRELTDARKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCILE 176
L ++ + S D +M +A EEL EKR++ L + LLPKD ADE++ ILE
Sbjct: 59 AVDLAAMRDDASTDAEMRALALEELPGV---EKRIEGLEQEVQILLLPKDAADEKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAETERSESRR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLT 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|393722766|ref|ZP_10342693.1| peptide chain release factor 1 [Sphingomonas sp. PAMC 26605]
Length = 357
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 173/358 (48%), Positives = 246/358 (68%), Gaps = 3/358 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ I +R+L IE R L L+ + + + +K+ +L E+R + E+
Sbjct: 1 MTSISPERILQIEARRDELSALMASGDLPSDRFVQVSKDYAELEPIARAAGEVRRLRAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
D L + E D ++ MA EE+ D + L SLLP+D ADER +LE+RAG
Sbjct: 61 DVLAGM--EEESDPEIKLMAREEIATIRDTLPDAERALALSLLPRDAADERAAMLEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GW+ E++ + S+ G+KEA A++ G GV+ KLKFE
Sbjct: 119 TGGDEAALFAADLFRMYQRYAEAQGWRVELISASSSESGGFKEAIASVEGKGVFAKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVDV++ ++DLRID YRS G GGQ NT
Sbjct: 179 SGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDVKIDDKDLRIDVYRSSGPGGQSVNT 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+ HIPTG+T+ QDE+SQH N+AKA++VL +LYE ER R+H R+ R +G
Sbjct: 239 TDSAVRIVHIPTGLTVIQQDEKSQHKNRAKAMRVLRTRLYEAERDRLHQERAGARKSMVG 298
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYNFPQGRVTDHR+ +T H + ++++GE +D + AL+ Q E + +A+
Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILQGE-MDELVGALIAQDEAERLAAL 355
>gi|153008371|ref|YP_001369586.1| peptide chain release factor 1 [Ochrobactrum anthropi ATCC 49188]
gi|166223580|sp|A6WXQ3.1|RF1_OCHA4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|151560259|gb|ABS13757.1| peptide chain release factor 1 [Ochrobactrum anthropi ATCC 49188]
Length = 357
Score = 353 bits (906), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L++ + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSET--YVKLASEYSELQEVVGKIRELTDSRKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCILE 176
L ++ + S D +M +A EEL EKR++ L + LLPKD ADE++ ILE
Sbjct: 59 AVDLAAMRDDASTDAEMRALALEELPGV---EKRIEGLEQEVQILLLPKDAADEKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKADTERSESRR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLT 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|209965909|ref|YP_002298824.1| peptide chain release factor 1 PrfA [Rhodospirillum centenum SW]
gi|209959375|gb|ACJ00012.1| peptide chain release factor 1 PrfA [Rhodospirillum centenum SW]
Length = 360
Score = 353 bits (906), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 171/326 (52%), Positives = 237/326 (72%), Gaps = 2/326 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++++E +L I+ELR + ++ L+++ +D +M +A +EL A
Sbjct: 36 FVRSSQEYAELEPVATAIAELRRARADMADLQAMAE--GDDAEMATLARDELVEADRRIP 93
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ ++ +LLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MY RY+ +GW+FE +
Sbjct: 94 ELERRIMLALLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGIQGWRFETIE 153
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V E+ L GYKEASA+I+G V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 154 VNETGLGGYKEASASITGRNVFRRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAE 213
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVD+ + +DLRID +RS GSGGQ NTT+SAVR+TH+PT + + QDE+SQH NKAKAL
Sbjct: 214 EVDIHIEEKDLRIDVFRSQGSGGQSVNTTDSAVRITHLPTNIVVQCQDEKSQHKNKAKAL 273
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
KVL A+LYE+ER R R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + I
Sbjct: 274 KVLRARLYEIERQRRDSERAASRRTQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKIDK 333
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
+M GE LD +DAL+ E + +A
Sbjct: 334 VMAGEALDELVDALVASDEAERLAEL 359
>gi|332188246|ref|ZP_08389974.1| peptide chain release factor 1 [Sphingomonas sp. S17]
gi|332011745|gb|EGI53822.1| peptide chain release factor 1 [Sphingomonas sp. S17]
Length = 357
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 247/355 (69%), Gaps = 3/355 (0%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I +R+ IE R L+ ++ + + +KE +L + +E+R ++E D L
Sbjct: 4 ISAERIAQIEARRDELQAMMATGDLPSDRFVAVSKEYAELEPVANAAAEVRRLRQEADSL 63
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
+ + D ++ ++A EEL L +LLP+D ADER +LE+RAGTGG
Sbjct: 64 TFMTQDG--DDELRELAAEELHANRTALAAADRHLALALLPRDAADERAAMLEIRAGTGG 121
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+F+MY+RY++++GW+ EV+ + D GYKE A+++G GV+ KLKFESG+
Sbjct: 122 DEAALFAGDLFRMYQRYAERQGWRVEVISASIPDTGGYKEVVASVAGAGVFAKLKFESGV 181
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP+TE GR+HTSA +VA+LP+A+EVD+++ ++DLRID YRS G+GGQH NTT+S
Sbjct: 182 HRVQRVPVTESGGRIHTSAATVAVLPEAEEVDLQIDDKDLRIDIYRSSGAGGQHVNTTDS 241
Query: 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGD 363
A+R+THIPTG+ + QDERSQH N+AKA+KVL +LYE ER R+ R+ R +GSGD
Sbjct: 242 AIRITHIPTGLVVIQQDERSQHKNRAKAMKVLRTRLYEAERERLAAERAGTRRSMVGSGD 301
Query: 364 RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
RSERIRTYNFPQGRVTDHR+ +T H + +++EGE LD I ALL + E + +A+
Sbjct: 302 RSERIRTYNFPQGRVTDHRINLTLHRLPEILEGE-LDELIGALLAEDEAERLAAL 355
>gi|163843895|ref|YP_001628299.1| peptide chain release factor 1 [Brucella suis ATCC 23445]
gi|189039961|sp|B0CIC3.1|RF1_BRUSI RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|163674618|gb|ABY38729.1| peptide chain release factor 1 [Brucella suis ATCC 23445]
Length = 359
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 178/363 (49%), Positives = 255/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIITTVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|103488191|ref|YP_617752.1| peptide chain release factor 1 [Sphingopyxis alaskensis RB2256]
gi|119361612|sp|Q1GPK3.1|RF1_SPHAL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|98978268|gb|ABF54419.1| bacterial peptide chain release factor 1 (bRF-1) [Sphingopyxis
alaskensis RB2256]
Length = 355
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 168/359 (46%), Positives = 246/359 (68%), Gaps = 5/359 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ + +++ AI R A L+ + + +PA++ A+KE +L E+ ++E+
Sbjct: 1 MTSVSARQIDAIIERHAALQARMATGDMAPADFVAASKEFAELEPVATAAREVVRLREEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
L ++ D +M MA EE+ + L LLPKD AD R +LE+RAG
Sbjct: 61 VALNEMLA----DPEMKAMAVEEIAAVEAALPAAEHDLALQLLPKDVADSRAAMLEIRAG 116
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+ +MY RY+ +GWK E++ E+++ GYKE A++SG GV+ KLKFE
Sbjct: 117 TGGDEAALFAGDLLRMYSRYADTQGWKVEIISANEAEVGGYKEVVASVSGQGVFAKLKFE 176
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV + + DL+ID YR+ G+GGQH NT
Sbjct: 177 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVAINDSDLKIDIYRASGAGGQHVNT 236
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+AKA++VL A+LY++ER ++H + + R +G
Sbjct: 237 TDSAIRITHIPTGLVVIQQDQRSQHKNRAKAMQVLRARLYDLEREKLHSAEASARKSMVG 296
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG +D IDAL+ + + +A G
Sbjct: 297 SGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEG-AMDELIDALIAEDQAQRLAGLG 354
>gi|261758813|ref|ZP_06002522.1| peptide chain release factor 1 [Brucella sp. F5/99]
gi|261738797|gb|EEY26793.1| peptide chain release factor 1 [Brucella sp. F5/99]
Length = 359
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 178/363 (49%), Positives = 255/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFST 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>gi|294010049|ref|YP_003543509.1| peptide chain release factor RF-1 [Sphingobium japonicum UT26S]
gi|292673379|dbj|BAI94897.1| peptide chain release factor RF-1 [Sphingobium japonicum UT26S]
Length = 363
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/359 (47%), Positives = 245/359 (68%), Gaps = 2/359 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P E+ + +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPEEFVRLSKEYAEIEPVAKAAHEVRRLRQELS 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + L LLPKD AD R +LE+RA
Sbjct: 61 ALEYMAGGEDADSDPLMREMAQEEMQLIKSRLPDAERALALQLLPKDAADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S++ GYKE A+++G GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADAQGWKMELISANASEVGGYKEVVASVTGTGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VA+LP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+P+G+ ++ QDERSQH NKAKA++VL A++YE ER R ++ R +
Sbjct: 241 TTDSAVRITHLPSGIVVTQQDERSQHKNKAKAMQVLRARIYEAERERAQSEQAGARKAMV 300
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL+ + E +A
Sbjct: 301 GSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLSEVIDALVAEDEAARLAQL 359
>gi|374319360|ref|YP_005065859.1| Peptide chain release factor RF-1 [Rickettsia slovaca 13-B]
gi|383751342|ref|YP_005426443.1| peptide chain release factor 1 [Rickettsia slovaca str. D-CWPP]
gi|360041909|gb|AEV92291.1| Peptide chain release factor RF-1 [Rickettsia slovaca 13-B]
gi|379774356|gb|AFD19712.1| peptide chain release factor 1 [Rickettsia slovaca str. D-CWPP]
Length = 355
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 253/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENALPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGKLDEFVEALIADDE 348
>gi|15604386|ref|NP_220902.1| peptide chain release factor 1 [Rickettsia prowazekii str. Madrid
E]
gi|383487352|ref|YP_005405032.1| peptide chain release factor 1 [Rickettsia prowazekii str. GvV257]
gi|383487931|ref|YP_005405610.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Chernikova]
gi|383488777|ref|YP_005406455.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Katsinyian]
gi|383489616|ref|YP_005407293.1| peptide chain release factor 1 [Rickettsia prowazekii str. Dachau]
gi|383499757|ref|YP_005413118.1| peptide chain release factor 1 [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500593|ref|YP_005413953.1| peptide chain release factor 1 [Rickettsia prowazekii str. RpGvF24]
gi|386082378|ref|YP_005998955.1| Peptide chain release factor RF-1 [Rickettsia prowazekii str. Rp22]
gi|6225942|sp|Q9ZD21.1|RF1_RICPR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|3861078|emb|CAA14978.1| PEPTIDE CHAIN RELEASE FACTOR 1 (prfA) [Rickettsia prowazekii str.
Madrid E]
gi|292572142|gb|ADE30057.1| Peptide chain release factor RF-1 [Rickettsia prowazekii str. Rp22]
gi|380757717|gb|AFE52954.1| peptide chain release factor 1 [Rickettsia prowazekii str. GvV257]
gi|380758290|gb|AFE53526.1| peptide chain release factor 1 [Rickettsia prowazekii str. RpGvF24]
gi|380760810|gb|AFE49332.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Chernikova]
gi|380761656|gb|AFE50177.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Katsinyian]
gi|380762503|gb|AFE51023.1| peptide chain release factor 1 [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763339|gb|AFE51858.1| peptide chain release factor 1 [Rickettsia prowazekii str. Dachau]
Length = 355
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/320 (51%), Positives = 237/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I + + E++ + E + D L+M E+ +
Sbjct: 29 EFVKASKEYAELEDVVVKIKQYNKAKSELEEANNFRLEMALDNATLEMIDNEIHTLENLL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + SLLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RYS+ KGW+FE++
Sbjct: 89 PKLERAVRISLLPKDEADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYSEFKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQR+P TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRIPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+ +D+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EGIDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A+LYE +R + RS R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARLYEEKRRQKEQERSDSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD FI+AL+ E
Sbjct: 329 EVVKHGQLDEFIEALIANDE 348
>gi|34580401|ref|ZP_00141881.1| peptide chain release factor RF-1 [Rickettsia sibirica 246]
gi|383484025|ref|YP_005392938.1| peptide chain release factor 1 [Rickettsia parkeri str. Portsmouth]
gi|28261786|gb|EAA25290.1| peptide chain release factor RF-1 [Rickettsia sibirica 246]
gi|378936379|gb|AFC74879.1| peptide chain release factor 1 [Rickettsia parkeri str. Portsmouth]
Length = 355
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 253/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>gi|357973917|ref|ZP_09137888.1| peptide chain release factor 1 [Sphingomonas sp. KC8]
Length = 361
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/361 (47%), Positives = 249/361 (68%), Gaps = 6/361 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
++ I R+ IE R L+ ++ + + + + +KE +L E+R + E+
Sbjct: 1 MVSIPPARIAQIEARRDELQAMMARGDLAADRFVAVSKEYAELEPVAAAAGEVRRLRAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL---QSLLLKSLLPKDDADERDCILEV 177
L +I + D ++ +MA +E A D RL + L LLP+D ADER +LE+
Sbjct: 61 ANLAFMIDDPQADAEIREMAQDE---AADIRARLPDAERALAIRLLPRDAADERAAMLEI 117
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA+LFA D+F+MY+RY++ +GWK E++ + ++L GYKE A+++G GV+ +L
Sbjct: 118 RAGTGGDEAALFAGDLFRMYQRYAEDRGWKVELISASAAELGGYKEVVASVTGAGVFARL 177
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GR+HTSA +VA+LP+A++VDV++ ++DLRID YRS G GGQ
Sbjct: 178 KFESGVHRVQRVPATESGGRIHTSAATVAVLPEAEDVDVQIDDKDLRIDVYRSSGPGGQS 237
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVR+TH+P+G+ + QDE+SQH NKAKALKVL +LYE ER R+ +R+ R
Sbjct: 238 VNTTDSAVRITHLPSGLVVIQQDEKSQHKNKAKALKVLRTRLYEQERERLASARAGERKA 297
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+GSGDRSERIRTYNFPQGRVTDHR+ +T H +S+++EG LD + AL+ + E +A+
Sbjct: 298 MVGSGDRSERIRTYNFPQGRVTDHRINLTLHRLSEILEGPGLDELVSALIAEDEAARLAN 357
Query: 418 F 418
Sbjct: 358 L 358
>gi|418410195|ref|ZP_12983505.1| peptide chain release factor 1 [Agrobacterium tumefaciens 5A]
gi|358003754|gb|EHJ96085.1| peptide chain release factor 1 [Agrobacterium tumefaciens 5A]
Length = 360
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/364 (49%), Positives = 250/364 (68%), Gaps = 7/364 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + + E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKVREYEKAVS 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E GL++L+ + + DKDM D+A EL +L+ + LLPKD ADE+ ILE+R
Sbjct: 58 EAAGLQALLADKTTDKDMRDLAEMELPEVEARIGQLEKEMQVLLLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFASAKGWKVEVLSASEGEAGGYKEIIATISGRGVFSKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+GGQH
Sbjct: 178 FESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY++ER ++ RS R Q
Sbjct: 238 NTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKAMQVLRSRLYDIERQKVESERSADRKSQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGRVTDHR+ +T + + M+EGE +D +DAL+ + +A
Sbjct: 297 VGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMIEGE-IDELVDALIADYQAGQLAQL 355
Query: 419 GSTQ 422
G Q
Sbjct: 356 GEQQ 359
>gi|238650227|ref|YP_002916078.1| peptide chain release factor 1 [Rickettsia peacockii str. Rustic]
gi|259585243|sp|C4K0C9.1|RF1_RICPU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238624325|gb|ACR47031.1| peptide chain release factor 1 [Rickettsia peacockii str. Rustic]
Length = 355
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 238/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQERADSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD F++AL+ E
Sbjct: 329 EVVKNGQLDEFVEALIADDE 348
>gi|157964580|ref|YP_001499404.1| peptide chain release factor 1 [Rickettsia massiliae MTU5]
gi|379713807|ref|YP_005302145.1| peptide chain release factor 1 [Rickettsia massiliae str. AZT80]
gi|166977368|sp|A8F1S1.1|RF1_RICM5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157844356|gb|ABV84857.1| Peptide chain release factor RF-1 [Rickettsia massiliae MTU5]
gi|376334453|gb|AFB31685.1| peptide chain release factor 1 [Rickettsia massiliae str. AZT80]
Length = 361
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 253/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>gi|13472970|ref|NP_104537.1| peptide chain release factor 1 [Mesorhizobium loti MAFF303099]
gi|20139342|sp|Q98G93.1|RF1_RHILO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|14023718|dbj|BAB50323.1| peptide chain release factor 1 [Mesorhizobium loti MAFF303099]
Length = 359
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/346 (50%), Positives = 248/346 (71%), Gaps = 10/346 (2%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y K E +L+D + + +LR+ + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVKMASEYAELQDMVAKVRQLRSAEHEQADLEAMLADKGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+A +L D E+R+++L + LLPKD AD+++ ILE+RAGTGG+EA+LFA D+
Sbjct: 76 RALAEADLP---DVEERIEALQKDIQILLLPKDAADDKNAILEIRAGTGGDEAALFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYERY+ ++GW+FE V ++ D G+KE A +SG GV+ LKFESG+HRVQRVP TE
Sbjct: 133 FRMYERYAAERGWRFETVSASDGDAGGFKEIIATVSGKGVFAHLKFESGVHRVQRVPATE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG
Sbjct: 193 ASGRIHTSAATVAVLPEAEEVDIEIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTG 252
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ + +Q E+SQH N+AKA+++L A+LY++ERS+ RS+ R Q+GSGDRSERIRTYNF
Sbjct: 253 IMV-VQAEKSQHQNRAKAMQILRARLYDLERSKADEERSESRKSQVGSGDRSERIRTYNF 311
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
PQGRVTDHR+ +T + + +M GE LD +DAL+ + +A G
Sbjct: 312 PQGRVTDHRINLTLYKLDRVMMGE-LDEIVDALIADHQSKLLADIG 356
>gi|427409351|ref|ZP_18899553.1| peptide chain release factor 1 [Sphingobium yanoikuyae ATCC 51230]
gi|425711484|gb|EKU74499.1| peptide chain release factor 1 [Sphingobium yanoikuyae ATCC 51230]
Length = 363
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 172/359 (47%), Positives = 244/359 (67%), Gaps = 2/359 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P + K +KE ++ ELR ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPDAFVKLSKEYAEIEPVARAAHELRRLRQELR 60
Query: 122 GLKSLI--YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + E D M +MA EE+ L + + L LLPKD AD R +LE+RA
Sbjct: 61 ALEQMAGGEESDADPLMREMAQEEMQLLKGQLPDAERALALQLLPKDSADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S+ G+KE A+I+G GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGTGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VAILP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDERSQH NKAKA++VL A++YE ER R ++ R +
Sbjct: 241 TTDSAVRITHLPTGIVVTQQDERSQHKNKAKAMQVLRARIYEAERERTQSEQAGARKAMV 300
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL+ + E +A
Sbjct: 301 GSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLAEVIDALVAEDEAARLAQL 359
>gi|390169627|ref|ZP_10221560.1| peptide chain release factor 1 [Sphingobium indicum B90A]
gi|389587631|gb|EIM65693.1| peptide chain release factor 1 [Sphingobium indicum B90A]
Length = 363
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/359 (46%), Positives = 247/359 (68%), Gaps = 2/359 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P E+ + +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPEEFVRLSKEYAEIEPVAKAAHEVRRLRQELS 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + L LLP+D AD R +LE+RA
Sbjct: 61 ALEYMAGGEDADADPLMREMAQEEMQLIKSRLPDAERALALQLLPRDAADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S++ G+KE A+++G+GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADAQGWKMELISANASEVGGFKEVVASVTGIGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VA+LP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+P+G+ ++ QDERSQH NKAKA++VL A++YE+ER R ++ R +
Sbjct: 241 TTDSAVRITHLPSGIVVTQQDERSQHKNKAKAMQVLRARIYEVERERAQSEQAGARKAMV 300
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL+ + E +A
Sbjct: 301 GSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLSEVIDALVAEDEAARLAQL 359
>gi|67459154|ref|YP_246778.1| peptide chain release factor 1 [Rickettsia felis URRWXCal2]
gi|75536414|sp|Q4ULG0.1|RF1_RICFE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|67004687|gb|AAY61613.1| Peptide chain release factor RF-1 [Rickettsia felis URRWXCal2]
Length = 355
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 238/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQERADSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD F++AL+ E
Sbjct: 329 EVVKNGQLDEFVEALIADDE 348
>gi|383481611|ref|YP_005390526.1| peptide chain release factor 1 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933950|gb|AFC72453.1| peptide chain release factor 1 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 361
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 174/357 (48%), Positives = 254/357 (71%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ ++ E+ K +KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSAIMGDEFVKTSKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I+++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKINEVVKNGQLDEFVEALIADDE 348
>gi|15892685|ref|NP_360399.1| peptide chain release factor 1 [Rickettsia conorii str. Malish 7]
gi|20139335|sp|Q92HK9.1|RF1_RICCN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|15619858|gb|AAL03300.1| peptide chain release factor RF-1 [Rickettsia conorii str. Malish
7]
Length = 355
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 252/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWHFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>gi|402703521|ref|ZP_10851500.1| peptide chain release factor 1 [Rickettsia helvetica C9P9]
Length = 355
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 237/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVIEKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 SKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQERADSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD FI+ L+ E
Sbjct: 329 EVVKNGQLDEFIETLIADDE 348
>gi|239832947|ref|ZP_04681276.1| peptide chain release factor 1 [Ochrobactrum intermedium LMG 3301]
gi|444311554|ref|ZP_21147161.1| peptide chain release factor 1 [Ochrobactrum intermedium M86]
gi|239825214|gb|EEQ96782.1| peptide chain release factor 1 [Ochrobactrum intermedium LMG 3301]
gi|443485113|gb|ELT47908.1| peptide chain release factor 1 [Ochrobactrum intermedium M86]
Length = 357
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 248/351 (70%), Gaps = 10/351 (2%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
++R S + N P++ Y K E +L++ + I EL ++E L ++ + +
Sbjct: 13 LKRFSMIESQMANNPDSET--YVKLASEYSELQEVVGKIRELTDARREAVDLAAMRDDAA 70
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCILEVRAGTGGEEASL 188
D +M +A EEL + EKR+ +L + LLPKD ADE++ ILE+RAGTGG EA+L
Sbjct: 71 TDAEMRALALEELP---EVEKRIGTLEQEVQILLLPKDAADEKNAILEIRAGTGGLEAAL 127
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ KLKFESG+HRVQR
Sbjct: 128 FAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFESGVHRVQR 187
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQH NTT+SAVR+T
Sbjct: 188 VPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRIT 247
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R Q+GSGDRSERI
Sbjct: 248 HIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAETERSESRRSQVGSGDRSERI 306
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + + G
Sbjct: 307 RTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLTELG 356
>gi|229586782|ref|YP_002845283.1| peptide chain release factor 1 [Rickettsia africae ESF-5]
gi|259585242|sp|C3PNN0.1|RF1_RICAE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|228021832|gb|ACP53540.1| Peptide chain release factor RF-1 [Rickettsia africae ESF-5]
Length = 355
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 174/357 (48%), Positives = 253/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSG+RSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGNRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>gi|381199262|ref|ZP_09906412.1| peptide chain release factor 1 [Sphingobium yanoikuyae XLDN2-5]
Length = 363
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 171/359 (47%), Positives = 244/359 (67%), Gaps = 2/359 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P + K +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPDAFVKLSKEYAEIEPVARAAHEVRRLRQELR 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + + L LLPKD AD R +LE+RA
Sbjct: 61 ALEQMAGGEDSDADPLMREMAQEEMQLLKGQLPDAERALALQLLPKDSADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S+ G+KE A+I+G GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGTGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VAILP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDERSQH NKAKA++VL A++YE ER R ++ R +
Sbjct: 241 TTDSAVRITHLPTGIVVTQQDERSQHKNKAKAMQVLRARIYEAERERTQSEQAGARKAMV 300
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL+ + E +A
Sbjct: 301 GSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLAEVIDALVAEDEAARLAQL 359
>gi|118588514|ref|ZP_01545923.1| peptide chain release factor 1 [Stappia aggregata IAM 12614]
gi|118439220|gb|EAV45852.1| peptide chain release factor 1 [Stappia aggregata IAM 12614]
Length = 357
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 172/347 (49%), Positives = 250/347 (72%), Gaps = 9/347 (2%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
R A LE++++ P Y K ++E L + I L ++++ G K+L+ + S D
Sbjct: 13 RFAELEHMMS-ANPDPGAYVKLSREYAGLEPLVGKIRALIKAEQDLAGAKALLQDPSSDA 71
Query: 135 DMLDMATEELCLAIDE-EKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
+M ++A E DE E+R++ L + LLPKD+AD D ILEVRAGTGG+EA+LFA
Sbjct: 72 EMRELAEMER----DELEERVEELAQDVRIGLLPKDEADSNDAILEVRAGTGGDEAALFA 127
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+F+MY+RY++ +GWK E++ +E ++ GYKE A++SG V+ KLKFESG+HRVQRVP
Sbjct: 128 GDLFRMYQRYAELQGWKVEILSASEGEVGGYKEVIASVSGENVFAKLKFESGVHRVQRVP 187
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA+LPQA++VD+ ++ DLRIDTYR+ G+GGQH NTT+SAVR+TH+
Sbjct: 188 ATESGGRIHTSAATVAVLPQAEDVDIDVQESDLRIDTYRASGAGGQHVNTTDSAVRITHL 247
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ +++QDERSQH NKA+A+++L A++Y+ ER R R++ R Q+GSGDRSERIRT
Sbjct: 248 PTGIVVAVQDERSQHKNKARAMQLLRARIYDEERERAASERTEARRLQVGSGDRSERIRT 307
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
YN+PQGRVTDHR+G+T + + ++ GE L I+ L+L + +A+
Sbjct: 308 YNYPQGRVTDHRIGLTLYKLEQILSGEALGEVIEPLILDHQASLLAT 354
>gi|332716892|ref|YP_004444358.1| peptide chain release factor 1 [Agrobacterium sp. H13-3]
gi|325063577|gb|ADY67267.1| peptide chain release factor 1 [Agrobacterium sp. H13-3]
Length = 360
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 183/368 (49%), Positives = 252/368 (68%), Gaps = 15/368 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + + E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKVREYEKAVS 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLA---IDE-EKRLQSLLLKSLLPKDDADERDCI 174
E L++L+ + + DKDM D+A EL I E EK +Q LLL PKD ADE+ I
Sbjct: 58 EAADLQALLADKTTDKDMRDLAEMELPEVEARIGELEKEMQVLLL----PKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFASAKGWKVEVLSASEGEAGGYKEIIATISGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY++ER ++ RS
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKAMQVLRSRLYDIERQKVESERSAD 292
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + M+EGE +D +DAL+ +
Sbjct: 293 RKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMIEGE-IDELVDALIADYQAGQ 351
Query: 415 IASFGSTQ 422
+A G Q
Sbjct: 352 LAQLGEQQ 359
>gi|51473710|ref|YP_067467.1| peptide chain release factor 1 [Rickettsia typhi str. Wilmington]
gi|383752487|ref|YP_005427587.1| peptide chain release factor 1 [Rickettsia typhi str. TH1527]
gi|383843322|ref|YP_005423825.1| peptide chain release factor 1 [Rickettsia typhi str. B9991CWPP]
gi|61214605|sp|Q68WK7.1|RF1_RICTY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|51460022|gb|AAU03985.1| peptide chain release factor 1 (RF-1) [Rickettsia typhi str.
Wilmington]
gi|380759130|gb|AFE54365.1| peptide chain release factor 1 [Rickettsia typhi str. TH1527]
gi|380759969|gb|AFE55203.1| peptide chain release factor 1 [Rickettsia typhi str. B9991CWPP]
Length = 355
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 168/320 (52%), Positives = 236/320 (73%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ +L E + D L+M E+ + +
Sbjct: 29 EFVKASKEYAELEDIVVKIKEYNKVKSELEEANNLRLEVALDNATLEMINNEIYILENLL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + SLLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVRISLLPKDEADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAEFKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++ + + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISNTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+ VD+++ ++DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EGVDIKIEDKDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A+LYE +R + RS R Q+GSGDRSERIRTYNF GRV+DHR+ +T + I
Sbjct: 269 LKILRARLYEEKRRQKEQERSDSRRWQVGSGDRSERIRTYNFLHGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD FI+AL+ E
Sbjct: 329 EVVKHGQLDEFIEALIANDE 348
>gi|393720641|ref|ZP_10340568.1| peptide chain release factor 1 [Sphingomonas echinoides ATCC 14820]
Length = 357
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 175/360 (48%), Positives = 244/360 (67%), Gaps = 3/360 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ I R+ IE R L L+ + + + +KE +L E+R + E+
Sbjct: 1 MTSISPDRIRQIEARRDELSALMATGDLPSDRFVQVSKEYAELEPVARAAGEVRRLRAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
D L + E D ++ MA EE+ + + L SLLP+D ADER +LE+RAG
Sbjct: 61 DVLAGM--EDDGDPEIKTMAREEIDTIRERLPVAERALALSLLPRDAADERAAMLEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GW+ E++ + S+ G+KEA A++ G GV+ KLKFE
Sbjct: 119 TGGDEAALFAADLFRMYQRYAESQGWRVELISTSSSESGGFKEAIASVEGKGVFAKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVDV++ ++DLRID YRS G GGQ NT
Sbjct: 179 SGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDVKIEDKDLRIDIYRSSGPGGQSVNT 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+ HIPTG+T+ QDE+SQH NKAKA++VL +LYE ER R+H R+ R +G
Sbjct: 239 TDSAVRIVHIPTGLTVIQQDEKSQHKNKAKAMRVLRTRLYEAERDRLHQERAGARKSMVG 298
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
SGDRSERIRTYNFPQGRVTDHR+ +T H + +++ GE +D + AL+ Q E + +AS S
Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILAGE-MDELLGALIAQDEAERLASLDS 357
>gi|383482240|ref|YP_005391154.1| peptide chain release factor 1 [Rickettsia montanensis str. OSU
85-930]
gi|378934594|gb|AFC73095.1| peptide chain release factor 1 [Rickettsia montanensis str. OSU
85-930]
Length = 361
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 252/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + + KA+KE +L D + I +
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDAFVKASKEYAELEDVVAKIKKYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ +++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSDLEEANNFKLEVGLDNATLEMIKDEIHTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T H I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLHKIDEVVKNGQLDEFVEALIADDE 348
>gi|433773052|ref|YP_007303519.1| peptide chain release factor 1 [Mesorhizobium australicum WSM2073]
gi|433665067|gb|AGB44143.1| peptide chain release factor 1 [Mesorhizobium australicum WSM2073]
Length = 359
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 244/343 (71%), Gaps = 4/343 (1%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y + E +L++ + + ELR+ + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVRMASEYAELQEMVAKVRELRSAEHEQADLEAMLADKGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A +L + + LQ + LLP+D AD+++ ILE+RAGTGG+EA+LFA D+F+M
Sbjct: 76 RALAEADLPGVEERIETLQKDIQILLLPRDAADDKNAILEIRAGTGGDEAALFAGDLFRM 135
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
YERY+ ++GW+FE V ++ D G+KE A ISG GV+ LKFESG+HRVQRVP TE SG
Sbjct: 136 YERYAAERGWRFETVSASDGDAGGFKEIIATISGKGVFAHLKFESGVHRVQRVPATEASG 195
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG+ +
Sbjct: 196 RIHTSAATVAVLPEAEEVDIDIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTGIMV 255
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
+Q E+SQH N+AKA+++L A+LY+MERS+ RS+ R Q+GSGDRSERIRTYNFPQG
Sbjct: 256 -VQAEKSQHQNRAKAMQILRARLYDMERSKADEERSESRKSQVGSGDRSERIRTYNFPQG 314
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RVTDHR+ +T + + +M GE LD +DAL+ + +A G
Sbjct: 315 RVTDHRINLTLYKLDRVMMGE-LDEIVDALIADHQSKLLADIG 356
>gi|398382459|ref|ZP_10540544.1| peptide chain release factor 1 [Sphingobium sp. AP49]
gi|397726565|gb|EJK86998.1| peptide chain release factor 1 [Sphingobium sp. AP49]
Length = 363
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/359 (47%), Positives = 244/359 (67%), Gaps = 2/359 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P + K +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPDAFVKLSKEYAEIEPVAKAAHEVRRLRQELR 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + + L LLPKD AD R +LE+RA
Sbjct: 61 ALEQMAGGEDSDADPLMREMAQEEMQLLKGQLPDAERALALQLLPKDSADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S+ G+KE A+I+G GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGTGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VAILP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADGDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDERSQH NKAKA++VL A++YE ER R ++ R +
Sbjct: 241 TTDSAVRITHLPTGIVVTQQDERSQHKNKAKAMQVLRARIYEAERERTQSEQAGARKAMV 300
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL+ + E +A
Sbjct: 301 GSGDRSERIRTYNFPQGRVTDHRINLTMHRLPEILEGPGLVEVIDALVAEDEAARLAQL 359
>gi|407779483|ref|ZP_11126738.1| peptide chain release factor 1 [Nitratireductor pacificus pht-3B]
gi|407298614|gb|EKF17751.1| peptide chain release factor 1 [Nitratireductor pacificus pht-3B]
Length = 359
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/338 (50%), Positives = 248/338 (73%), Gaps = 10/338 (2%)
Query: 86 PEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145
PE P Y K E +L++ I ELR + E+ L++++ + S D++M ++A +L
Sbjct: 27 PE--PDVYVKLASEYAELQEVAAKIRELRQAEAELSDLETMLADPSTDREMRELAEADLG 84
Query: 146 LAIDEEKRLQSLLLKS---LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQ 202
D E+R+ +L + LLPKD+ADE++ ILE+RAGTGG+EA+LFA D+F+MYERY+
Sbjct: 85 ---DVEERIDALQAEMQILLLPKDEADEKNAILEIRAGTGGDEAALFAGDLFRMYERYAS 141
Query: 203 KKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSA 262
+K W+ EVV +E + GYKE A +SG GV+ +LKFESG+HRVQRVP TE GR+HTSA
Sbjct: 142 EKSWRVEVVSASEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRVPATEAQGRIHTSA 201
Query: 263 VSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER 322
+VA+LP+A+E+DV +RNED+RIDT R+ G+GGQH NTT+SAVR+THIP+G+ + +Q E+
Sbjct: 202 ATVAVLPEAEEIDVEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITHIPSGIVV-VQAEK 260
Query: 323 SQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHR 382
SQH N+A+A+++L A+L++ +RS+ RS+ R Q+GSGDRSERIRTYNFPQGR+TDHR
Sbjct: 261 SQHQNRARAMQILRARLFDAQRSKAADERSEARRLQVGSGDRSERIRTYNFPQGRLTDHR 320
Query: 383 VGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+ +T + + ++EG +LD +DAL+ + +A G+
Sbjct: 321 INLTLYKLDRIIEG-DLDEVVDALISDHQAKLLAETGA 357
>gi|430005302|emb|CCF21103.1| peptide chain release factor 1 [Rhizobium sp.]
Length = 360
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/368 (47%), Positives = 254/368 (69%), Gaps = 15/368 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E +++ A+ +EYS+ +RK+RD +E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSEGPAADVYVRLASEYSELQPVVRKIRDYEKATAE-- 58
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ L++L+ + + D++M ++A EL A + + L+ + LLPKD ADE+ I
Sbjct: 59 -----VADLRTLLADKATDREMRELAEMELPEAEERVEALEKDMQVLLLPKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYERY+ KGWK EV+ +E + G++E A +SG GV+
Sbjct: 114 LEIRAGTGGNEAALFAGDLFRMYERYAAGKGWKVEVLSASEGEAGGFREIIATVSGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+G
Sbjct: 174 SKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+MER + RS
Sbjct: 234 GQHVNTTDSAVRITHLPTGLVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQKADSERSAD 292
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE +D +DAL+ +
Sbjct: 293 RKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IDEVVDALIADYQAGQ 351
Query: 415 IASFGSTQ 422
+A G Q
Sbjct: 352 LAQLGEQQ 359
>gi|451941480|ref|YP_007462117.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900867|gb|AGF75329.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 359
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/348 (50%), Positives = 248/348 (71%), Gaps = 5/348 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + Q P A Y K E +L+ +H I L +E
Sbjct: 1 MVSLPKDRMTQLEKRFEIIESQMAQSPNADT--YVKLASEYAELQPIVHSIRALNALYRE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+ LI + D +M ++A EE+ L + ++ + L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELEILISDKLTDIEMRNLAQEEIPLLYQKMEQFEQELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV ++E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLSEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE SGR+HTSA +VA+LP+A+E+D+ +R+EDLRIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETSGRIHTSAATVAVLPEAEEIDIEIRSEDLRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQGR+TDHR+ +T + + ++EG +LD I AL+
Sbjct: 298 GSGDRSERIRTYNFPQGRITDHRINLTLYKLDRILEG-DLDELIHALI 344
>gi|408380658|ref|ZP_11178240.1| peptide chain release factor 1 [Agrobacterium albertimagni AOL15]
gi|407745434|gb|EKF56968.1| peptide chain release factor 1 [Agrobacterium albertimagni AOL15]
Length = 359
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/367 (48%), Positives = 257/367 (70%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + I E +
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKIREYQAAID 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCIL 175
E DGL++++ + + D++M ++A EL + E R+++L + LLPKD ADE+ IL
Sbjct: 58 EADGLRAMLSDKATDREMRELAEMELP---ELESRIEALGDEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFASTKGWKVEVLSASEGEAGGYKEIIATISGRGVFS 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++D+ ++ ED+RIDT R+ G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDIEIKPEDIRIDTMRASGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKAL+VL ++LY++ER ++ RS R
Sbjct: 235 QHVNTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKALQVLRSRLYDIERHKLDSERSANR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + M+EG +LD +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMIEG-DLDEMLDALISDYQAGQL 352
Query: 416 ASFGSTQ 422
A G TQ
Sbjct: 353 AQLGETQ 359
>gi|417861352|ref|ZP_12506407.1| peptide chain release factor 1 [Agrobacterium tumefaciens F2]
gi|338821756|gb|EGP55725.1| peptide chain release factor 1 [Agrobacterium tumefaciens F2]
Length = 360
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 182/372 (48%), Positives = 256/372 (68%), Gaps = 23/372 (6%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E ++ A+ +EYS+ ++K+RD +SE
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAVSEAA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLA---IDE-EKRLQSLLLKSLLPKDDADE 170
L++L+ + + DKDM D+A EL I E EK +Q LLL PKD ADE
Sbjct: 61 D-------LEALLADKTTDKDMRDLAEMELPEVESRISELEKDMQVLLL----PKDAADE 109
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
+ ILE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG
Sbjct: 110 KSAILEIRAGTGGSEAALFAGDLFRMYERFASTKGWKVEVLSASEGEAGGYKEIIATISG 169
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++D+ +R ED+RIDT R+
Sbjct: 170 RGVFSKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDIEIRPEDIRIDTMRA 229
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY++ER ++
Sbjct: 230 SGAGGQHVNTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKAMQVLRSRLYDIERQKVDNE 288
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + M+EGE +D +DAL+
Sbjct: 289 RSADRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMIEGE-IDELLDALIADY 347
Query: 411 EMDAIASFGSTQ 422
+ +A G Q
Sbjct: 348 QAGQLAQLGEQQ 359
>gi|87198313|ref|YP_495570.1| peptide chain release factor 1 [Novosphingobium aromaticivorans DSM
12444]
gi|119361571|sp|Q2GBN7.1|RF1_NOVAD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|87133994|gb|ABD24736.1| bacterial peptide chain release factor 1 (bRF-1) [Novosphingobium
aromaticivorans DSM 12444]
Length = 354
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 244/357 (68%), Gaps = 5/357 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ + + R+ I R A LE + A++ A+++ +L + E+R + E+
Sbjct: 1 MSVSDARLAQIAARFAELEARLASGTLEGADFIAASRDYAELEPVARVAEEVREMRGELV 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L +L +D DM ++A EEL E + L ++LP+D AD R +LE+RAGT
Sbjct: 61 SLAAL-----DDPDMRELADEELARIRAELPEAEHRLAVAMLPRDSADARPAMLEIRAGT 115
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MYERY+ ++GW+ E + V +DL GYKE A ++G GV+ KLKFES
Sbjct: 116 GGDEAALFAADLFRMYERYAAEQGWRVETISVNANDLGGYKEVVANVAGQGVFAKLKFES 175
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ DEVDV + ++DL+ID YR+ G+GGQH NTT
Sbjct: 176 GVHRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVAIEDKDLKIDIYRASGAGGQHVNTT 235
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+TH+P+G+ ++ QDERSQH NKAKA++VL +LY+M R + ++ R +GS
Sbjct: 236 DSAVRITHLPSGLVVTCQDERSQHKNKAKAMQVLRTRLYDMRREAAQGAEAEARKAMVGS 295
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL+ + + +A+
Sbjct: 296 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLAELIDALIAEDQSKRLAAM 352
>gi|297181089|gb|ADI17288.1| protein chain release factor a [uncultured alpha proteobacterium
HF0070_17D04]
Length = 359
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 246/355 (69%), Gaps = 8/355 (2%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+VLA RR L + SP E + ++EL +LR I +R + + D L
Sbjct: 9 KVLA--RRDEVESRLADAASMSPDELASLSRELFELRPVCEQIDLVRRLEGDRDAAVMLA 66
Query: 128 YECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
E ++D +M +MA +E+ + EE LLL LP+D D R+ ILEVRAGTGG+
Sbjct: 67 EEAADDAEMAEMAQAEIQEIEARLPEEMNSLQLLL---LPRDRDDSRNAILEVRAGTGGD 123
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY+R++ K GW+FEV+ V+E+ + GYKEA+A I+G V+ +LKFESG+H
Sbjct: 124 EAALFASDLFGMYQRFAAKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFESGVH 183
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSA +VA+LP+A++VD+ ++ DLRID +R+ G GGQ NTT+SA
Sbjct: 184 RVQRVPETEAGGRIHTSAATVAVLPEAEDVDIDVQESDLRIDVFRASGPGGQSVNTTDSA 243
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+THIPTG+ +S QDE+SQH N+AKA+K+L A+LY+ ER+R+ R+ R Q+GSGDR
Sbjct: 244 VRITHIPTGIMVSQQDEKSQHKNRAKAMKILRARLYDAERARLQAERAASRKGQVGSGDR 303
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SERIRTYNFPQGRVTDHR+ +T + + ++ GE LD ++AL+ + + +A G
Sbjct: 304 SERIRTYNFPQGRVTDHRINLTLYKLDKVIAGEALDEVVEALVAEDQAQRLAEGG 358
>gi|121602027|ref|YP_988678.1| peptide chain release factor 1 [Bartonella bacilliformis KC583]
gi|421760486|ref|ZP_16197303.1| peptide chain release factor 1 [Bartonella bacilliformis INS]
gi|166223530|sp|A1URS5.1|RF1_BARBK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|120614204|gb|ABM44805.1| peptide chain release factor 1 [Bartonella bacilliformis KC583]
gi|411175770|gb|EKS45795.1| peptide chain release factor 1 [Bartonella bacilliformis INS]
Length = 359
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 174/348 (50%), Positives = 246/348 (70%), Gaps = 5/348 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ IE+R +E+ + Q P A Y K E +L+ + I L KE
Sbjct: 1 MVSLSQDRMKQIEKRFEIIESQMAQNPNAET--YVKLASEYAELQQIVTPIRTLNALYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+ L+++ D DM +A EEL L + ++L+ + LLPKD ADE+ I+E+RA
Sbjct: 59 VTELEAMANTTQIDADMYALAQEELVLLRQKIEQLEQEIQILLLPKDIADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV +++S++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANAHKWKVEVVSLSDSEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L ++L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRSRLFDIERQKAESERSASRKTQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD I+ L+
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEG-DLDELINPLI 344
>gi|427432053|ref|ZP_18921050.1| Peptide chain release factor 1 [Caenispirillum salinarum AK4]
gi|425877425|gb|EKV26169.1| Peptide chain release factor 1 [Caenispirillum salinarum AK4]
Length = 352
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 169/313 (53%), Positives = 231/313 (73%), Gaps = 4/313 (1%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
++ +KE+ L + I+ELR + +++ +++ + D +M D+A EE +
Sbjct: 31 ARMSKEISDLTPVVEAIAELRKARSDLEEAEAM----ASDPEMRDLAQEEAADLRERVPE 86
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L+PKD+AD R+ ILEVRAGTGG+EA+LFA ++F+MYERY+ KGWK EV+ +
Sbjct: 87 LEHAVKLLLVPKDEADARNAILEVRAGTGGDEAALFAGELFRMYERYAALKGWKVEVMDL 146
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E+DL G KE A ISG V+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A +
Sbjct: 147 NETDLGGVKEVVAMISGRDVFARLKYESGVHRVQRVPETEGGGRIHTSAATVAVLPEAQD 206
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
VDV + ++DLRIDTYRS G+GGQH NTT SAVR+TH+PTG+ + Q+E+SQH NKAKALK
Sbjct: 207 VDVHIEDKDLRIDTYRSQGAGGQHVNTTESAVRITHVPTGVVAACQEEKSQHKNKAKALK 266
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L AKLYE +R + R++ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T +AI +
Sbjct: 267 MLMAKLYEHQREQAVNERAEARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYAIDKI 326
Query: 394 MEGENLDIFIDAL 406
M+GE LD +DAL
Sbjct: 327 MQGEGLDDLVDAL 339
>gi|337266182|ref|YP_004610237.1| peptide chain release factor 1 [Mesorhizobium opportunistum
WSM2075]
gi|336026492|gb|AEH86143.1| peptide chain release factor 1 [Mesorhizobium opportunistum
WSM2075]
Length = 359
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 242/343 (70%), Gaps = 4/343 (1%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y K E +L++ + + LR+ + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVKMASEYAELQEMVAKVRALRSAEHEQADLEAMLADKGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A +L + + LQ + LLP+D AD+++ ILE+RAGTGG+EA+LFA D+F+M
Sbjct: 76 RALAEADLPGVEERIEALQKDIQLLLLPRDAADDKNAILEIRAGTGGDEAALFAGDLFRM 135
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
YERY+ + GW+FE V ++ D G+KE A ISG GV+ LKFESG+HRVQRVP TE SG
Sbjct: 136 YERYAAEHGWRFETVSASDGDAGGFKEIIATISGRGVFAHLKFESGVHRVQRVPATEASG 195
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG+ +
Sbjct: 196 RIHTSAATVAVLPEAEEVDIDIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTGIMV 255
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
+Q E+SQH N+AKA+++L A+LY+MERS+ RS+ R Q+GSGDRSERIRTYNFPQG
Sbjct: 256 -VQAEKSQHQNRAKAMQILRARLYDMERSKADEERSEARKSQVGSGDRSERIRTYNFPQG 314
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RVTDHR+ +T + + +M GE LD IDAL+ + +A G
Sbjct: 315 RVTDHRINLTLYKLDRVMMGE-LDEVIDALIADHQSKLLADIG 356
>gi|384262086|ref|YP_005417272.1| Peptide chain release factor 1 [Rhodospirillum photometricum DSM
122]
gi|378403186|emb|CCG08302.1| Peptide chain release factor 1 [Rhodospirillum photometricum DSM
122]
Length = 354
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 245/342 (71%), Gaps = 4/342 (1%)
Query: 79 LENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
L L+ Q + + ++EL L + I+ L + E ++++ +D D+
Sbjct: 17 LHALLAQSTGGGETFVRLSRELADLTPVVEAITALERARTERAEAQAML----DDPDLRA 72
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
+A EEL D RL+ + LLPKD+ADER ILEVRAGTGG+EA+LFA D+ +MY
Sbjct: 73 LAREELDRLDDTLPRLEKDVWLMLLPKDEADERGVILEVRAGTGGDEAALFAGDLLRMYG 132
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+Q++GW+FEV+ +++D+ G KEASA+I+G GVY +LK+ESG+HRVQRVP+TE GR+
Sbjct: 133 RYAQERGWRFEVLDASDTDIGGVKEASASIAGRGVYARLKYESGVHRVQRVPVTEAGGRI 192
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +VA+LP+A+EVDV++ ++DLR+DTYRS G+GGQH NTT+SAVR+TH+P+G+ +
Sbjct: 193 HTSAATVAVLPEAEEVDVQIDDKDLRVDTYRSQGAGGQHVNTTDSAVRITHLPSGVVVQC 252
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QDE+SQH N+AKA+++L AKLY+ R +R+ R Q+GSGDRSERIRTYNFPQGRV
Sbjct: 253 QDEKSQHKNRAKAMRMLRAKLYDHARQVADDARAAARKTQVGSGDRSERIRTYNFPQGRV 312
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TDHR+G+T H + +++ G LD ID L+ + + +A G+
Sbjct: 313 TDHRIGLTLHRLPEVLAGTALDEVIDPLIAEDQAAKLAELGA 354
>gi|420242577|ref|ZP_14746605.1| peptide chain release factor 1 [Rhizobium sp. CF080]
gi|398066813|gb|EJL58364.1| peptide chain release factor 1 [Rhizobium sp. CF080]
Length = 360
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 179/367 (48%), Positives = 253/367 (68%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ K+ +++ +ERR +E +++ A+ Y K E +L+ + I E E+
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSEGPAADV-YVKLASEYSELQPVVRKIREYEKSIAEV 59
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL-----LLKSLLPKDDADERDCIL 175
L++++ + D++M ++A EL A E+RL+ L LL LLPKD ADER IL
Sbjct: 60 ADLRAMLTDKGTDREMRELAEMELPEA---EERLEGLEKDMQLL--LLPKDAADERSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYERY+ KGWK EV+ +E + GYKE A ++G GV+
Sbjct: 115 EIRAGTGGNEAALFAGDLFRMYERYAATKGWKVEVLSASEGEAGGYKEIIATVTGRGVFS 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE SGR+HTSA +VA++P+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPDTEASGRIHTSAATVAVMPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL +LY+MER + RS R
Sbjct: 235 QHVNTTDSAVRITHMPSGIVVT-SSEKSQHQNRAKAMQVLRTRLYDMERQKADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEG ++D +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEG-DIDEVVDALISDYQAGQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|15890803|ref|NP_356475.1| peptide chain release factor 1 [Agrobacterium fabrum str. C58]
gi|22096038|sp|Q8U8B8.1|RF1_AGRT5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|15159088|gb|AAK89260.1| peptide chain release factor 1 [Agrobacterium fabrum str. C58]
Length = 360
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 177/368 (48%), Positives = 253/368 (68%), Gaps = 15/368 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E ++ A+ +EYS+ ++K+RD ISE
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAISEAA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
L++L+ + + DKDM D+A EL + L+ + LLPKD ADE+ I
Sbjct: 61 D-------LEALLADKTTDKDMRDLAEMELPEVETRIRELEKDMQVLLLPKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFAATKGWKVEVLSASEGEAGGYKEIIATITGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY++ER ++ RS
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKAMQVLRSRLYDIERQKVDSERSAD 292
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EGE +D +DAL+ +
Sbjct: 293 RKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVIEGE-IDELVDALIADYQAGQ 351
Query: 415 IASFGSTQ 422
+A G Q
Sbjct: 352 LAQLGEQQ 359
>gi|407976875|ref|ZP_11157771.1| peptide chain release factor 1 [Nitratireductor indicus C115]
gi|407427774|gb|EKF40462.1| peptide chain release factor 1 [Nitratireductor indicus C115]
Length = 359
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 174/346 (50%), Positives = 250/346 (72%), Gaps = 10/346 (2%)
Query: 79 LENLVNQPEASP-AE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E + Q A P AE Y K E +L++ I EL+ + E+ L +++ + S D++M
Sbjct: 16 FELIETQMAAGPDAETYVKLASEYSELQEVAAKIRELKQAEGELADLTAMLNDASTDREM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
++A +L E+RL++L + LLPKD+ADE++ ILE+RAGTGG+EA+LFA D+
Sbjct: 76 RELAEADLETV---EERLETLSAEMQLLLLPKDEADEKNAILEIRAGTGGDEAALFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYERY+ +GW+ EVV +E + GYKE A +SG GV+ +LKFESG+HRVQRVP TE
Sbjct: 133 FRMYERYAADRGWRVEVVSTSEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRVPATE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GR+HTSA +VA+LP+A+E+DV +RNED+RIDT R+ G+GGQH NTT+SAVR+THIP+G
Sbjct: 193 AQGRIHTSAATVAVLPEAEEIDVEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITHIPSG 252
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ + +Q E+SQH N+A+A+++L ++L++M+R + RS+ R Q+GSGDRSERIRTYNF
Sbjct: 253 IVV-VQAEKSQHQNRARAMQILRSRLFDMQRMKAADERSEARRLQVGSGDRSERIRTYNF 311
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
PQGRVTDHR+ +T + + ++EGE LD IDAL+ + +A G
Sbjct: 312 PQGRVTDHRINLTLYKLDRVIEGE-LDELIDALIADHQSRLLAETG 356
>gi|395491365|ref|ZP_10422944.1| peptide chain release factor 1 [Sphingomonas sp. PAMC 26617]
Length = 357
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 174/358 (48%), Positives = 246/358 (68%), Gaps = 9/358 (2%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I +R+ IE R L L+ + + +KE +L E+R + E+ L
Sbjct: 4 ISPERIAQIEARRDELSALMATGDLPSDRFVAVSKEYAELEPVARAAGEVRRLRAELGVL 63
Query: 124 KSLIYECSEDKDMLDMATEELCL---AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+ E +D ++ MA EE+ + + +R SL +LLP+D ADER +LE+RAG
Sbjct: 64 AGM--EADDDPEIKTMAREEIEAIRGTLPDAERALSL---ALLPRDAADERAAMLEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GWK E++ + S+ G+KEA A++ G GV+ KLKFE
Sbjct: 119 TGGDEAALFAADLFRMYQRYAEGQGWKVELISASSSESGGFKEAIASVEGKGVFAKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVDV++ ++DLRID YRS G GGQ NT
Sbjct: 179 SGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDVKIDDKDLRIDVYRSSGPGGQSVNT 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+ HIPTG+T+ QDE+SQH N+AKA+KVL +LYE ER R+H R+ R +G
Sbjct: 239 TDSAVRIVHIPTGLTVIQQDEKSQHKNRAKAMKVLRTRLYEAERERLHTERAGARKSMVG 298
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYNFPQGRVTDHR+ +T H + ++++GE ++ + AL+ Q E + +AS
Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILQGE-MEELLGALIAQDEAERLASL 355
>gi|297180646|gb|ADI16856.1| protein chain release factor a [uncultured alpha proteobacterium
HF0010_13E22]
Length = 359
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 246/355 (69%), Gaps = 8/355 (2%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+VLA RR L + SP E + ++EL +LR I +R + + D L
Sbjct: 9 KVLA--RRDEVESWLADAASMSPDELASLSRELSELRPVCEQIDLVRRLEGDRDAAVMLA 66
Query: 128 YECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
E ++D +M +MA +E+ + EE LLL LP+D D R+ ILEVRAGTGG+
Sbjct: 67 EEAADDAEMAEMAQAEIQEIEARLPEEMNSLQLLL---LPRDRDDSRNAILEVRAGTGGD 123
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY+R++ K GW+FEV+ V+E+ + GYKEA+A I+G V+ +LKFESG+H
Sbjct: 124 EAALFASDLFGMYQRFAAKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFESGVH 183
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSA +VA+LP+A++VD+ +++ DLRID +R+ G GGQ NTT+SA
Sbjct: 184 RVQRVPETEAGGRIHTSAATVAVLPEAEDVDIDVQDSDLRIDVFRASGPGGQSVNTTDSA 243
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+THIPTG+ +S QDE+SQH N+AKA+K+L A+LY+ ER+R+ R+ R Q+GSGDR
Sbjct: 244 VRITHIPTGIVVSQQDEKSQHKNRAKAMKILRARLYDAERARLQAERAASRKGQVGSGDR 303
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SERIRTYNFPQGRVTDHR+ +T + + ++ GE LD ++AL+ + +A G
Sbjct: 304 SERIRTYNFPQGRVTDHRINLTLYKLDKVIAGEALDEVVEALVAEDRAQRLAEGG 358
>gi|378827170|ref|YP_005189902.1| Peptide chain release factor 1 RF-1 [Sinorhizobium fredii HH103]
gi|365180222|emb|CCE97077.1| Peptide chain release factor 1 RF-1 [Sinorhizobium fredii HH103]
Length = 360
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 182/370 (49%), Positives = 253/370 (68%), Gaps = 19/370 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR A +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFAEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKATA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDADERD 172
E+ ++ L+ + + DKDM D+A EE A+++E +Q LLL PKD ADE+
Sbjct: 58 ELADIEVLLADRATDKDMRDLAEMERPEVEERIEALEQE--IQILLL----PKDAADEKS 111
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +SG G
Sbjct: 112 AILEIRAGTGGSEAALFAGDLFRMYERYAAGKGWRVEVLSASEGEAGGYKEIIATVSGRG 171
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
V+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G
Sbjct: 172 VFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSG 231
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRS 352
+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++L++MER R RS
Sbjct: 232 AGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQHQNRAKAMQVLRSRLFDMERQRADSERS 290
Query: 353 KLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEM 412
R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE +D +DALL +
Sbjct: 291 ADRKSQVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGE-IDEVVDALLADHQA 349
Query: 413 DAIASFGSTQ 422
+A G Q
Sbjct: 350 SQLALLGERQ 359
>gi|335036125|ref|ZP_08529455.1| peptide chain release factor 1 [Agrobacterium sp. ATCC 31749]
gi|333792689|gb|EGL64056.1| peptide chain release factor 1 [Agrobacterium sp. ATCC 31749]
Length = 360
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 176/368 (47%), Positives = 253/368 (68%), Gaps = 15/368 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E ++ A+ +EYS+ ++K+RD ISE
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAISEAA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
L++L+ + + D+DM D+A EL + L+ + LLPKD ADE+ I
Sbjct: 61 D-------LEALLADKTTDRDMRDLAEMELPEVETRIRELEKDMQVLLLPKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFAATKGWKVEVLSASEGEAGGYKEIIATITGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPQTEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY++ER ++ RS
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKAMQVLRSRLYDIERQKVDSERSAD 292
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EGE +D +DAL+ +
Sbjct: 293 RKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVIEGE-IDELVDALIADYQAGQ 351
Query: 415 IASFGSTQ 422
+A G Q
Sbjct: 352 LAQLGEQQ 359
>gi|241116888|ref|XP_002401657.1| protein releasing factor, putative [Ixodes scapularis]
gi|215493201|gb|EEC02842.1| protein releasing factor, putative [Ixodes scapularis]
Length = 358
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 236/320 (73%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L+D + I E + E++ + E D L+M +E+ +
Sbjct: 32 EFVKASKEYAELKDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 92 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+++ + GYKEASA I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 152 AISDMGIGGYKEASALIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 211
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DL+IDTYR+ G+GGQH NTT+SAVR+THIPT +T+++QDE+SQH NKAKA
Sbjct: 212 EEVDIKIEDKDLKIDTYRASGAGGQHVNTTDSAVRITHIPTSITVALQDEKSQHKNKAKA 271
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 272 LKILRARIYEEERRKKEQERADSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 331
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD F++AL+ E
Sbjct: 332 EVVKNGQLDEFVEALIADDE 351
>gi|381166791|ref|ZP_09876005.1| peptide chain release factor 1 [Phaeospirillum molischianum DSM
120]
gi|380684364|emb|CCG40817.1| peptide chain release factor 1 [Phaeospirillum molischianum DSM
120]
Length = 358
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 168/326 (51%), Positives = 231/326 (70%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A+ + +KEL L + I R + E+ ++ + S D DM MA EE +
Sbjct: 30 AQIPRLSKELSDLDPVVEAIVTFRKSRDEMAEAAVMMQDASADPDMRAMAEEEFFALKER 89
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ + LLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MYERYS KGW+FEV
Sbjct: 90 LPDLERAVQIMLLPKDEADEKNAILEVRAGTGGDEAALFAAELFRMYERYSGLKGWRFEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ ++ + G +EASA I+G GV+ +LKFESG HRVQRVP TE SGR+HTSA +VA+LP+
Sbjct: 150 LDANDTGIGGVREASAKITGRGVFARLKFESGAHRVQRVPATEASGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A+EVD+++ +DLR+D YRS GSGGQ NTT+SAVRVTHIPTG+ ++ Q E+SQH NKA
Sbjct: 210 AEEVDIQIDEKDLRVDVYRSQGSGGQSVNTTDSAVRVTHIPTGLAVACQQEKSQHKNKAT 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ +L ++LYE +RS + R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + I
Sbjct: 270 AMTLLRSRLYERQRSALDAERAANRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKI 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIA 416
+M G+ LD ++AL+ + + +A
Sbjct: 330 DAVMAGDALDEVVEALIATDQAERLA 355
>gi|404251678|ref|ZP_10955646.1| peptide chain release factor 1 [Sphingomonas sp. PAMC 26621]
Length = 357
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 176/360 (48%), Positives = 246/360 (68%), Gaps = 13/360 (3%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I +R+ IE R L L+ + + +KE +L E+R + E+ L
Sbjct: 4 ISPERIAQIEARRDELSALMATGDLPSDRFVAVSKEYAELEPVARAAGEVRRLRAELGVL 63
Query: 124 KSLIYECSEDKDMLDMATEEL-----CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ E +D ++ MA EE+ L + E R SL +LLP+D ADER +LE+R
Sbjct: 64 AGM--EADDDPEIKTMAREEIEAIRGTLPVAE--RALSL---ALLPRDAADERAAMLEIR 116
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LFA D+F+MY+RY++ +GWK E++ + S+ G+KEA A++ G GV+ KLK
Sbjct: 117 AGTGGDEAALFAADLFRMYQRYAEGQGWKVELISASSSESGGFKEAIASVEGKGVFAKLK 176
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVDV++ ++DLRID YRS G GGQ
Sbjct: 177 FESGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDVKIDDKDLRIDVYRSSGPGGQSV 236
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+ HIPTG+T+ QDE+SQH N+AKA+KVL +LYE ER R+H R+ R
Sbjct: 237 NTTDSAVRIVHIPTGLTVIQQDEKSQHKNRAKAMKVLRTRLYEAERERLHSERAGARKSM 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGRVTDHR+ +T H + ++++GE ++ + AL+ Q E + +AS
Sbjct: 297 VGSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILQGE-MEELLGALIAQDEAERLASL 355
>gi|408786054|ref|ZP_11197793.1| peptide chain release factor 1 [Rhizobium lupini HPC(L)]
gi|424908657|ref|ZP_18332034.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392844688|gb|EJA97210.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|408487924|gb|EKJ96239.1| peptide chain release factor 1 [Rhizobium lupini HPC(L)]
Length = 359
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 182/365 (49%), Positives = 252/365 (69%), Gaps = 15/365 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + I E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKIREYEKAIS 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLA---IDE-EKRLQSLLLKSLLPKDDADERDCI 174
E L++L+ + + DKDM ++A EL I+E EK +Q LLL PKD ADE+ I
Sbjct: 58 EAADLEALLADKTTDKDMRELAEMELPEIESRIEELEKDMQVLLL----PKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFAASKGWKVEVLSASEGEAGGYKEIIATISGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY++ER ++ RS
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKAMQVLRSRLYDIERQKVDSERSAD 292
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + M+EGE +D +DAL+ +
Sbjct: 293 RKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMIEGE-IDELVDALIADYQAGQ 351
Query: 415 IASFG 419
+A G
Sbjct: 352 LAQLG 356
>gi|262277608|ref|ZP_06055401.1| peptide chain release factor 1 [alpha proteobacterium HIMB114]
gi|262224711|gb|EEY75170.1| peptide chain release factor 1 [alpha proteobacterium HIMB114]
Length = 355
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 169/342 (49%), Positives = 239/342 (69%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+V I R LE ++Q + Y K +KE + D + + ++ +G + ++
Sbjct: 6 KVKEIISRYETLEKTLSQTDIDKNTYVKNSKEYSSIGDIIIDVKNYIKMVEDKEGSEKIL 65
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+ S DK++ +MA EL ++ L++ + +LPKD+ADE++ I+E+RAGTGG EAS
Sbjct: 66 EDKSADKELKEMAELELNEIKEKIGDLETKIKIFMLPKDEADEKNAIIEIRAGTGGLEAS 125
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA D+F+MY++ + GWK E++ +++SD GYKE +++G V+ KLKFESG+HRVQ
Sbjct: 126 LFAGDLFEMYQKVASNNGWKTEIISISDSDAGGYKEVVFSVTGKNVFSKLKFESGVHRVQ 185
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GRVHTSA +VA+LP+A++VDV++ +LRID +RS G GGQ NTT+SAVR+
Sbjct: 186 RVPKTETQGRVHTSAATVAVLPEAEDVDVKIDENELRIDVFRSSGPGGQSVNTTDSAVRI 245
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIP+G+ +S QDE+SQH NKAKALK+L +KLYE+ERS++ RS R QIGSGDRSER
Sbjct: 246 THIPSGIVVSQQDEKSQHKNKAKALKILRSKLYELERSKLEKERSSARKSQIGSGDRSER 305
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
IRTYNFPQGRVTDHR+ +T H +SD + G+ DAL +Q
Sbjct: 306 IRTYNFPQGRVTDHRINLTLHKLSDFLSGDVFSEISDALQIQ 347
>gi|239947714|ref|ZP_04699467.1| peptide chain release factor 1 [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921990|gb|EER22014.1| peptide chain release factor 1 [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 355
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 236/320 (73%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L+D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELKDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+++ + GYKEASA I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDMGIGGYKEASALIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DL+IDTYR+ G+GGQH NTT+SAVR+THIPT +T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLKIDTYRASGAGGQHVNTTDSAVRITHIPTSITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQERADSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD F++AL+ E
Sbjct: 329 EVVKNGQLDEFVEALIADDE 348
>gi|418299950|ref|ZP_12911780.1| peptide chain release factor 1 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355534513|gb|EHH03821.1| peptide chain release factor 1 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 359
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 182/365 (49%), Positives = 251/365 (68%), Gaps = 15/365 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + I E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKIREYEKAVS 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELC---LAIDE-EKRLQSLLLKSLLPKDDADERDCI 174
E L++L+ + + D+DM D+A EL I E EK +Q LLL PKD ADE+ I
Sbjct: 58 EAADLEALLADKTTDRDMRDLAEMELPEIETRIGELEKDMQVLLL----PKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFASTKGWKVEVLSASEGEAGGYKEIIATISGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY++ER ++ RS
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKAMQVLRSRLYDIERQKVESERSAD 292
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + M+EGE +D +DAL+ +
Sbjct: 293 RKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMIEGE-IDELVDALIADYQAGQ 351
Query: 415 IASFG 419
+A G
Sbjct: 352 LAQLG 356
>gi|395767004|ref|ZP_10447542.1| peptide chain release factor 1 [Bartonella doshiae NCTC 12862]
gi|395415616|gb|EJF82050.1| peptide chain release factor 1 [Bartonella doshiae NCTC 12862]
Length = 359
Score = 347 bits (889), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 251/360 (69%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAET--YVKLASEYAELQPIITSIRTLNALSIE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL L + ++L+ L LLPKD ADE++ I+E+RA
Sbjct: 59 ITELETIIRDKLTDVEMRILAQEELPLLYQKVEQLEKELQILLLPKDIADEKNAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV + E ++ GYKE A +SG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYACTHHWKVEVVSLNEGEVGGYKEIIATVSGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER +I RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKIESERSVSRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD IDAL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLDTLIDALISDHQTALLTEMD 356
>gi|359789213|ref|ZP_09292167.1| peptide chain release factor 1 [Mesorhizobium alhagi CCNWXJ12-2]
gi|359254954|gb|EHK57912.1| peptide chain release factor 1 [Mesorhizobium alhagi CCNWXJ12-2]
Length = 358
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/348 (50%), Positives = 245/348 (70%), Gaps = 5/348 (1%)
Query: 61 LIKIMEQRVLAIERRSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + R+ + +R LE + P+A Y K E ++D + I ELR ++E
Sbjct: 1 MISLPRDRMDQVVKRFEMLEAQMSAGPDADA--YVKMASEYSDIQDMVTKIRELRAAEQE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L++++ + D +M +A EL + + LQ + LLP+D ADE++ ILE+RA
Sbjct: 59 EADLQAMLADKGTDAEMRSLAEAELPAVEERIEALQKDIQILLLPRDAADEKNAILEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MYERY+ +GWK EV +E + GYKE A +SG GV+ LKF
Sbjct: 119 GTGGDEAALFAGDLFRMYERYAAARGWKMEVASASEGEAGGYKEIIATVSGRGVFAHLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A+EVD+ +R+ED+RIDT R+ GSGGQH N
Sbjct: 179 ESGVHRVQRVPETEGSGRIHTSAATVAVLPEAEEVDIEIRSEDIRIDTMRASGSGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ + +Q E+SQH N+A+A+++L A+L++MERSR RS+ R Q+
Sbjct: 239 TTDSAVRITHLPTGIMV-VQAEKSQHQNRARAMQILRARLFDMERSRADTERSESRRLQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQGRVTDHR+ +T + + +M GE LD + AL+
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMMGE-LDELVSALI 344
>gi|168203426|gb|ACA21561.1| protein release factor class I [Candidatus Pelagibacter ubique]
Length = 356
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/297 (54%), Positives = 227/297 (76%), Gaps = 2/297 (0%)
Query: 123 LKSLIYECSEDKDMLDMATEELC-LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
LK ++ + + D+++L MA E+ L I EK + L L LLP+D+AD+++ I+E+RAGT
Sbjct: 61 LKKILEDQNSDEELLKMAETEIKDLQIQFEKNEKKLKL-FLLPRDEADKKNAIIEIRAGT 119
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG EASLFA D+FKMYE+ S KK W E++ +++S+ G KE A+I G +Y LK+ES
Sbjct: 120 GGLEASLFAGDLFKMYEKVSHKKKWLVEIISISKSEAGGLKEVIASIKGTNIYSTLKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GRVHTSA +VA+LP+A+EVD+++ + DLRID +R+GG GGQ NTT
Sbjct: 180 GVHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDLKINDSDLRIDVFRAGGPGGQSVNTT 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+THIPTG+++S QDE+SQH NKAK +K+L A+LYE+ER+RI RS+ R +IG+
Sbjct: 240 DSAVRITHIPTGLSVSQQDEKSQHKNKAKGMKILRARLYELERTRIDQERSQDRKSKIGT 299
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+ +T H + + +EGE D I++L LQ + +++++
Sbjct: 300 GDRSERIRTYNFPQGRVTDHRINLTIHKLEEFLEGEAFDEMIESLTLQAQEESLSNL 356
>gi|110635328|ref|YP_675536.1| peptide chain release factor 1 [Chelativorans sp. BNC1]
gi|119361558|sp|Q11E04.1|RF1_MESSB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|110286312|gb|ABG64371.1| bacterial peptide chain release factor 1 (bRF-1) [Chelativorans sp.
BNC1]
Length = 359
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/336 (50%), Positives = 250/336 (74%), Gaps = 10/336 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELC 145
SP Y K E +L++ + I LR + E++ L +++ + S D+++ ++A EE+
Sbjct: 28 SPDAYVKLASEYSELQEVANSIRALRKAEAELEDLDTMLADKSIDREIRELAEIDREEVE 87
Query: 146 LAI-DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ D +++LQ LLL PKD+ADE++ ILE+RAGTGG+EA+LFA D+F+MYERY+ ++
Sbjct: 88 SRVEDMQQKLQVLLL----PKDEADEKNAILEIRAGTGGDEAALFAGDLFRMYERYASER 143
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
GW+ EVV +E + GYKE A+++G GV+ +LKFESG+HRVQRVP TE GR+HTSA +
Sbjct: 144 GWRVEVVSASEGEAGGYKEIIASVTGRGVFSRLKFESGVHRVQRVPATEAQGRIHTSAAT 203
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VA+LP+A+++DV ++ ED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+ + + E+SQ
Sbjct: 204 VAVLPEAEDIDVDIKPEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGIMV-VSAEKSQ 262
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H N+A+A+++L A+L++MERSR RS+ R Q+G+GDRSERIRTYNFPQGRVTDHR+
Sbjct: 263 HQNRARAMQILRARLFDMERSRAANERSEARRLQVGTGDRSERIRTYNFPQGRVTDHRIN 322
Query: 385 ITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+T + + +MEGE LD IDAL+ + +A+ G+
Sbjct: 323 LTLYKLDRVMEGE-LDEVIDALIADHQSKLLAAEGA 357
>gi|407770700|ref|ZP_11118067.1| peptide chain release factor RF-1 [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407286274|gb|EKF11763.1| peptide chain release factor RF-1 [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 360
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/347 (47%), Positives = 246/347 (70%), Gaps = 1/347 (0%)
Query: 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYEC 130
+ RR L++L++ ++K ++E +L + + +++ + +++G + ++ +
Sbjct: 10 GVVRRFDELKSLLSGGAVDGDSFAKLSREYAELSPIVEAVEKVKKLRVDLEGAQEILDDA 69
Query: 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D+DM +MA E +D + + + LLPKDDADE++ ILE+RAGTGGEEA+LFA
Sbjct: 70 GSDRDMREMAEAEKYEILDALPKAEHDVKLMLLPKDDADEKNAILEIRAGTGGEEAALFA 129
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+++MY+RY++ +GWKFE + E+DL GYKE +SG GV+ +LKFESG+HRVQRVP
Sbjct: 130 ADLYRMYQRYAENRGWKFEQMDANENDLGGYKEVIVNVSGSGVFARLKFESGVHRVQRVP 189
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
+TE GR+HTSA +VA+LP+A+EVD+ + +DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 VTEGGGRIHTSAATVAVLPEAEEVDIHIDPKDLRIDTYRSQGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + Q+ +SQH NK KA+K+L ++LY+ ER +R+ R Q+GSGDRSERIRT
Sbjct: 250 PTGVVAASQEAKSQHKNKEKAMKMLLSRLYDQERESKDSARAADRKSQVGSGDRSERIRT 309
Query: 371 YNFPQGRVTDHRVGITHHAISDMME-GENLDIFIDALLLQQEMDAIA 416
YNFPQGRV+DHR+ +T + + D + G ++D IDAL+ + + +A
Sbjct: 310 YNFPQGRVSDHRINLTLYRLDDFITGGPSVDEMIDALIAEDQAQKLA 356
>gi|359409095|ref|ZP_09201563.1| peptide chain release factor 1 [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356675848|gb|EHI48201.1| peptide chain release factor 1 [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 360
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/342 (50%), Positives = 241/342 (70%), Gaps = 9/342 (2%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
RVLA RR L SP + ++ ++EL ++R + +R Q+ + + LI
Sbjct: 9 RVLA--RRQEIEGRLAESGSLSPDQLTQLSRELAEIRPVAEQVEIVRQLQQNLTEARQLI 66
Query: 128 YECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
E + D ++++MA TEEL + E + LLL LPKD D R+ ILEVRAGTGG+
Sbjct: 67 EEET-DPELVEMAQAETEELAAQLPEAEHQLKLLL---LPKDTDDARNAILEVRAGTGGD 122
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY+R++ K GW+F+V+ V+E+ + GYKEA+A ISG V+ +LKFESG+H
Sbjct: 123 EAALFASDLFGMYQRFAAKYGWRFDVMEVSETGIGGYKEATANISGQDVFARLKFESGVH 182
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSA +VA+LP+A +VD+ + DLR+D +RS G GGQ NTT+SA
Sbjct: 183 RVQRVPETETGGRIHTSAATVAVLPEAQDVDIEINESDLRVDVFRSSGPGGQSVNTTDSA 242
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+TH+PTG+ +S QDE+SQH N+AKA+K+L A+LY+ ER+R R+ R Q+GSGDR
Sbjct: 243 VRITHLPTGIIVSQQDEKSQHKNRAKAMKILRARLYDAERARQQAERAASRKGQVGSGDR 302
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
SERIRTYNFPQGRVTDHR+ +T + + ++ GE+L+ +DAL
Sbjct: 303 SERIRTYNFPQGRVTDHRINLTLYKLDKILAGESLEEVVDAL 344
>gi|306842976|ref|ZP_07475610.1| peptide chain release factor 1 [Brucella sp. BO2]
gi|306286904|gb|EFM58429.1| peptide chain release factor 1 [Brucella sp. BO2]
Length = 315
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/313 (53%), Positives = 231/313 (73%), Gaps = 8/313 (2%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKD 166
I EL +KE L ++ + S D +M +A EEL + EKR+ L + LLPKD
Sbjct: 5 IRELSDARKEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKD 61
Query: 167 DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 226
AD+++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A
Sbjct: 62 VADDKNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIA 121
Query: 227 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 286
+SG GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RID
Sbjct: 122 TVSGKGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRID 181
Query: 287 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR 346
T R+ G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 182 TMRASGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQK 240
Query: 347 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL
Sbjct: 241 AESERSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDAL 299
Query: 407 LLQQEMDAIASFG 419
+ + +A G
Sbjct: 300 ISDHQTALLAELG 312
>gi|424916637|ref|ZP_18340001.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392852813|gb|EJB05334.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 359
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 178/367 (48%), Positives = 256/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++LI + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLIEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER+S +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFSAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE ++ +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRITDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|319408172|emb|CBI81825.1| peptide chain release factor 1 [Bartonella schoenbuchensis R1]
Length = 359
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/360 (48%), Positives = 250/360 (69%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ IE+R +E+ + P A Y K E +L+ + I L KE
Sbjct: 1 MVSLPQNRIKQIEKRFEIIESQMAGSPNAET--YIKLASEYAELQLIVTPIRTLNALYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I+ LK++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IEELKNIISDKQTDVEMRNLAQEELSLLCQKIEQLERELQILLLPKDIADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK E++ +++ D+ GYKE A +SG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANTHNWKVEIISLSDGDVGGYKEIVATVSGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ + ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETEAGGRIHTSAATVAVLPEAEEIDIAIHPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+ +AL++L A+L+++ER + RS+ R QI
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRTRALQILRARLFDIERQKAENERSESRKTQI 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELIHALISNHQTGLLTEMD 356
>gi|395784696|ref|ZP_10464518.1| peptide chain release factor 1 [Bartonella melophagi K-2C]
gi|395421956|gb|EJF88178.1| peptide chain release factor 1 [Bartonella melophagi K-2C]
Length = 359
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/349 (50%), Positives = 248/349 (71%), Gaps = 7/349 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASP-AE-YSKANKELRKLRDSMHLISELRTKQK 118
++ + + R+ IE+R +E+ Q SP AE Y K E +L+ + I L K
Sbjct: 1 MVSLPQNRIKQIEKRFEVIES---QMAGSPNAEIYIKLASEYAELQLIVTPIRTLNALYK 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
EI+ LK++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+R
Sbjct: 58 EIEELKNIISDKQTDVEMRNLAQEELLLLCQKIEQLERELQILLLPKDIADEKSAIIEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYERY+ WK E++ +++ D+ GYKE A +SG GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERYANTHNWKVEIISLSDGDVGGYKEIVATVSGKGVFSKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ + ED+RIDT R+ G+GGQH
Sbjct: 178 FESGVHRVQRIPETEAGGRIHTSAATVAVLPEAEEIDIAIHPEDIRIDTMRASGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+THIPTG+ + +Q E+SQH N+ +AL++L A+L+++ER + RS+ R Q
Sbjct: 238 NTTDSAVRITHIPTGIMV-VQAEKSQHQNRTRALQILRARLFDIERQKAENERSESRKTQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
IGSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD I AL+
Sbjct: 297 IGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELIHALI 344
>gi|418940341|ref|ZP_13493709.1| Peptide chain release factor 1 [Rhizobium sp. PDO1-076]
gi|375052961|gb|EHS49360.1| Peptide chain release factor 1 [Rhizobium sp. PDO1-076]
Length = 359
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 252/366 (68%), Gaps = 13/366 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + I E +
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKIREYQAATA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCIL 175
E L+S++ + D++M D+A EL D + RL++L + LLPKD ADE+ IL
Sbjct: 58 EEADLRSMLSDKGTDREMRDLAEMELP---DVQARLETLGTEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E D G+KE A ++G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFASTKGWKVEVLSSSEGDAGGFKEIIATVTGRGVFS 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAEDIDIEVRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+MER +I RS R
Sbjct: 235 QHVNTTDSAVRITHLPTGLVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQKIDNERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEG ++D +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEG-DIDEVVDALINDYQAGQL 352
Query: 416 ASFGST 421
A G +
Sbjct: 353 AQLGES 358
>gi|260755553|ref|ZP_05867901.1| peptide chain release factor 1 [Brucella abortus bv. 6 str. 870]
gi|260675661|gb|EEX62482.1| peptide chain release factor 1 [Brucella abortus bv. 6 str. 870]
Length = 342
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/336 (50%), Positives = 242/336 (72%), Gaps = 10/336 (2%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER +
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE 306
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T
Sbjct: 307 RSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLT 342
>gi|319781345|ref|YP_004140821.1| peptide chain release factor 1 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167233|gb|ADV10771.1| peptide chain release factor 1 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 359
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 240/343 (69%), Gaps = 4/343 (1%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y + E +++D + + LR + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVRMASEYAEIQDMVAKVRALRAAEHEQADLEAMLADRGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A EL D + LQ + LLP+D AD+++ ILE+RAGTGG+EA+LFA D+F+M
Sbjct: 76 RALAEAELPGVEDRIEALQKDIQILLLPRDAADDKNAILEIRAGTGGDEAALFAGDLFRM 135
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
YERY+ ++GW+FE ++ D GYKE A +SG GV+ LKFESG+HRVQRVP TE SG
Sbjct: 136 YERYAAERGWRFETASASDGDAGGYKEIIATVSGKGVFAHLKFESGVHRVQRVPATEASG 195
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG+ +
Sbjct: 196 RIHTSAATVAVLPEAEEVDIDIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTGIMV 255
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
+Q E+SQH N+AKA+++L A+LY++ER + RS+ R Q+GSGDRSERIRTYNFPQG
Sbjct: 256 -VQAEKSQHQNRAKAMQILRARLYDLERGKADEERSESRKSQVGSGDRSERIRTYNFPQG 314
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RVTDHR+ +T + + +M GE LD I+AL+ + +A G
Sbjct: 315 RVTDHRINLTLYKLDRVMMGE-LDEIINALIADHQSKLLADIG 356
>gi|56416889|ref|YP_153963.1| peptide chain release factor 1 [Anaplasma marginale str. St.
Maries]
gi|222475254|ref|YP_002563670.1| peptide chain release factor 1 [Anaplasma marginale str. Florida]
gi|255003238|ref|ZP_05278202.1| peptide chain release factor 1 [Anaplasma marginale str. Puerto
Rico]
gi|255004365|ref|ZP_05279166.1| peptide chain release factor 1 [Anaplasma marginale str. Virginia]
gi|81599140|sp|Q5PAH2.1|RF1_ANAMM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790858|sp|B9KIV2.1|RF1_ANAMF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56388121|gb|AAV86708.1| peptide chain release factor 1 [Anaplasma marginale str. St.
Maries]
gi|222419391|gb|ACM49414.1| peptide chain release factor 1 (prfA) [Anaplasma marginale str.
Florida]
Length = 359
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/343 (50%), Positives = 239/343 (69%), Gaps = 1/343 (0%)
Query: 79 LENLVNQPEASPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L+ ++ PE+ + + A++E L M LI E +T QKEI+ L+ LI D +++
Sbjct: 17 LKQQLSDPESLGVQAFVVASREYSDLLPIMSLIEEYQTAQKEIEELEGLINSTDTDAELV 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EEL +L+ L SLLPKD D R ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 HLAREELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGTGGEEAALFVCDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WK E +G++ + + GYKEAS I G V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFESGVHRVQRVPETESSGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ +
Sbjct: 197 LHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK+KALKVL A+LY +E+ +I SK+R QIGSGDRSERIRTYNF Q R
Sbjct: 257 QQDEKSQHKNKSKALKVLRARLYNLEKQKIEDEISKMRKSQIGSGDRSERIRTYNFLQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+TDHR+ +T + + +M+ +LD F+DAL+ + + + S
Sbjct: 317 ITDHRINMTLYRLEHIMKEGDLDEFVDALIADDQANKLQQISS 359
>gi|407721678|ref|YP_006841340.1| peptide chain release factor 1 [Sinorhizobium meliloti Rm41]
gi|407319910|emb|CCM68514.1| Peptide chain release factor 1 [Sinorhizobium meliloti Rm41]
Length = 360
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 178/367 (48%), Positives = 255/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQ---PVVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ + +++ + + DKDM D+A E ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 ATAELADIAAMLADRATDKDMRDLAEMERPEVEEKIEALEQEIQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +SG GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVSGRGVFS 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
+LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT RS G+GG
Sbjct: 175 RLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+THIPTG+ ++ E+SQH N+AKA++VL ++LY+MER R RS R
Sbjct: 235 QHVNTTDSAVRITHIPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE +D +DALL + +
Sbjct: 294 RSQVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGE-IDDVVDALLADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 ALLGERQ 359
>gi|15966364|ref|NP_386717.1| peptide chain release factor 1 [Sinorhizobium meliloti 1021]
gi|384530494|ref|YP_005714582.1| Peptide chain release factor 1 [Sinorhizobium meliloti BL225C]
gi|384537194|ref|YP_005721279.1| peptide chain release factor 1 [Sinorhizobium meliloti SM11]
gi|433614432|ref|YP_007191230.1| peptide chain release factor 1 [Sinorhizobium meliloti GR4]
gi|20139338|sp|Q92MK5.1|RF1_RHIME RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|15075635|emb|CAC47190.1| Probable peptide chain release factor 1 (RF-1) protein
[Sinorhizobium meliloti 1021]
gi|333812670|gb|AEG05339.1| Peptide chain release factor 1 [Sinorhizobium meliloti BL225C]
gi|336034086|gb|AEH80018.1| peptide chain release factor 1 [Sinorhizobium meliloti SM11]
gi|429552622|gb|AGA07631.1| peptide chain release factor 1 [Sinorhizobium meliloti GR4]
Length = 360
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 182/373 (48%), Positives = 258/373 (69%), Gaps = 25/373 (6%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQ---PVVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
S G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH N+AKA++VL ++LY+MER R
Sbjct: 229 SSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQRADS 287
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE +D +DALL
Sbjct: 288 ERSADRRSQVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGE-IDDVVDALLAD 346
Query: 410 QEMDAIASFGSTQ 422
+ +A G Q
Sbjct: 347 YQASQLALLGERQ 359
>gi|424886546|ref|ZP_18310154.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393175897|gb|EJC75939.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 359
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/364 (48%), Positives = 250/364 (68%), Gaps = 7/364 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKANA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 ELADLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDTADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R Q
Sbjct: 238 NTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE ++ +DAL+ + +A
Sbjct: 297 VGSGDRSERIRTYNFPQGRITDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQLAQL 355
Query: 419 GSTQ 422
G Q
Sbjct: 356 GEQQ 359
>gi|85713812|ref|ZP_01044802.1| Peptide chain release factor 1 [Nitrobacter sp. Nb-311A]
gi|85699716|gb|EAQ37583.1| Peptide chain release factor 1 [Nitrobacter sp. Nb-311A]
Length = 358
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 168/344 (48%), Positives = 237/344 (68%), Gaps = 3/344 (0%)
Query: 75 RSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LEN L++ A Y + +EL +L + + + R EI G+ ++I + + D
Sbjct: 13 RHAALENELLSHVSAD--RYVQMTRELAELNPVVEAVKDWRAITAEIAGIDAMIADPATD 70
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+M MA E L + +LLPKD DER+ +LEVRAGTGG+EASLFA D+
Sbjct: 71 AEMRAMAEAERPALEARNNELMQQIRIALLPKDAMDERNVMLEVRAGTGGDEASLFAGDL 130
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK EV+ +E + GYKE A + G G Y K+KFESG+HRVQRVP TE
Sbjct: 131 FRMYERFAALQGWKVEVISASEGTMGGYKEIVAEVQGRGAYAKMKFESGVHRVQRVPDTE 190
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GRVHTSA +VA+LP+A+EVDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 191 AQGRVHTSAATVAVLPEAEEVDVEIKPDDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 250
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ +++QD RSQH N+A A+ +L +++Y++ER RI+ +RS R +Q+GSGDRSERIRTYNF
Sbjct: 251 IVVNMQDSRSQHKNRASAMNILRSRIYDVERQRINAARSADRKDQVGSGDRSERIRTYNF 310
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
PQGRVTDHR+ +T + + ++ G+ L IDAL + + +A+
Sbjct: 311 PQGRVTDHRINLTLYKLPQVIAGDALHELIDALTTEHQAAQLAA 354
>gi|418403505|ref|ZP_12976993.1| peptide chain release factor 1 [Sinorhizobium meliloti CCNWSX0020]
gi|359502565|gb|EHK75139.1| peptide chain release factor 1 [Sinorhizobium meliloti CCNWSX0020]
Length = 360
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/370 (48%), Positives = 252/370 (68%), Gaps = 19/370 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQPVVSKIRAYAKATA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDADERD 172
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD ADE+
Sbjct: 58 ELADIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQE--IQILLL----PKDAADEKS 111
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +SG G
Sbjct: 112 AILEIRAGTGGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVSGRG 171
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
V+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT RS G
Sbjct: 172 VFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMRSSG 231
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRS 352
+GGQH NTT+SAVR+THIPTG+ ++ E+SQH N+AKA++VL ++LY+MER R RS
Sbjct: 232 AGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQRADSERS 290
Query: 353 KLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEM 412
R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE +D +DALL +
Sbjct: 291 ADRRSQVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGE-IDDVVDALLADYQA 349
Query: 413 DAIASFGSTQ 422
+A G Q
Sbjct: 350 SQLALLGERQ 359
>gi|254995073|ref|ZP_05277263.1| peptide chain release factor 1 [Anaplasma marginale str.
Mississippi]
Length = 359
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 239/343 (69%), Gaps = 1/343 (0%)
Query: 79 LENLVNQPEASPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L+ ++ PE+ + + A++E L M L+ E +T QKEI+ L+ LI D +++
Sbjct: 17 LKQQLSDPESLGVQAFVVASREYSDLLPIMSLVEEYQTAQKEIEELEGLINSTDTDAELV 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EEL +L+ L SLLPKD D R ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 HLAKEELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGTGGEEAALFVCDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WK E +G++ + + GYKEAS I G V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFESGVHRVQRVPETESSGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ +
Sbjct: 197 LHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK+KALKVL A+LY +E+ +I SK+R QIGSGDRSERIRTYNF Q R
Sbjct: 257 QQDEKSQHKNKSKALKVLRARLYNLEKQKIEDEISKMRKSQIGSGDRSERIRTYNFLQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+TDHR+ +T + + +M+ +LD F+DAL+ + + + S
Sbjct: 317 ITDHRINMTLYRLEHIMKEGDLDEFVDALIADDQANKLQQISS 359
>gi|209551100|ref|YP_002283017.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|238054472|sp|B5ZRR4.1|RF1_RHILW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|209536856|gb|ACI56791.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 359
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 256/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER+S +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFSAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE ++ +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRITDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|294085498|ref|YP_003552258.1| protein chain release factor A [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665073|gb|ADE40174.1| Protein chain release factor A [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 358
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 177/344 (51%), Positives = 243/344 (70%), Gaps = 10/344 (2%)
Query: 68 RVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+VLA R +EN++N + S E + +EL +LR I ++ E+ + +
Sbjct: 9 KVLA---RRTEVENILNDAASLSVDEMANFARELSELRPVCEQIELVQRLTSELSDAEVM 65
Query: 127 IYECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
+ E +D DML+MA +EL I +E++ LLPKD D R+ ILEVRAGTGG
Sbjct: 66 VGEAGDDPDMLEMARLEMQELQAQIPDEQQKLQ---LLLLPKDRDDARNAILEVRAGTGG 122
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+F MY+R+S K GWKFEV+ V+E+ + GYKEA+A I+G V+ +LKFESG+
Sbjct: 123 DEAALFASDLFGMYQRFSAKYGWKFEVMEVSETGIGGYKEATATITGSDVFARLKFESGV 182
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A++VDV + DLRID +R+ G GGQ NTT+S
Sbjct: 183 HRVQRVPETETGGRIHTSAATVAVLPEAEDVDVEVVESDLRIDVFRASGPGGQSVNTTDS 242
Query: 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGD 363
AVR+TH+PTG+ +S QDE+SQH N+AKA+K+L A+LY+ ER+R+ R+ R Q+GSGD
Sbjct: 243 AVRITHMPTGIVVSQQDEKSQHKNRAKAMKILRARLYDAERARVQAERAADRKGQVGSGD 302
Query: 364 RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RSERIRTYNFPQGRVTDHR+ +T + + ++ GE LD IDAL+
Sbjct: 303 RSERIRTYNFPQGRVTDHRINLTLYKLDRVIAGEALDEVIDALI 346
>gi|217977729|ref|YP_002361876.1| peptide chain release factor 1 [Methylocella silvestris BL2]
gi|254790890|sp|B8EI32.1|RF1_METSB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|217503105|gb|ACK50514.1| peptide chain release factor 1 [Methylocella silvestris BL2]
Length = 360
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 229/320 (71%), Gaps = 6/320 (1%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
PA Y + ++E L I + R++ +E++GL +++ + + D +M +A EEL D
Sbjct: 27 PALYVQLSREFAGLEQVAAAIRDYRSQMQEVEGLAAMLADPTTDSEMRGLAEEELR---D 83
Query: 150 EEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
++RL++L L +LLPKD ADER ILEVRAGTGG+EA+LFA D+F+MY+RY++ KGW
Sbjct: 84 AKERLEALEHQLKIALLPKDAADERSAILEVRAGTGGDEAALFAGDLFRMYQRYAESKGW 143
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
E++ E G+KE A I+G GV+ KLKFESG HRVQRVP TE GR+HTSA +VA
Sbjct: 144 SVEIISANEGAAGGFKEIIAEIAGRGVFAKLKFESGAHRVQRVPDTETQGRIHTSAATVA 203
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A EVDV + DL+IDT R+ G+GGQH N T SA+R+THIPTG + +QDERSQH
Sbjct: 204 VLPEAQEVDVEINEADLKIDTMRAQGAGGQHVNKTESAIRITHIPTGTIVFVQDERSQHK 263
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
N+A+A+ +L +++Y+ +R ++ R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T
Sbjct: 264 NRARAMALLRSRIYDEQRQKLDAERAADRRSQVGSGDRSERIRTYNFPQGRVTDHRINLT 323
Query: 387 HHAISDMMEGENLDIFIDAL 406
+ + ++ GE LD IDAL
Sbjct: 324 LYKLDKVITGEALDEVIDAL 343
>gi|269958696|ref|YP_003328483.1| peptide chain release factor 1 [Anaplasma centrale str. Israel]
gi|269848525|gb|ACZ49169.1| peptide chain release factor 1 [Anaplasma centrale str. Israel]
Length = 359
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 239/343 (69%), Gaps = 1/343 (0%)
Query: 79 LENLVNQPEASPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L+ ++ PE+ + + A++E L M L+ E +T QKEI+ L+ LI D +++
Sbjct: 17 LKQQLSDPESLGVQAFVVASREYSDLLPIMSLVEEYQTAQKEIEELEGLINSTDTDAELV 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EEL +L+ L SLLPKD D R ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 HLAREELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGTGGEEAALFVCDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WK E +G++ + + GYKEAS I G V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFESGVHRVQRVPETESSGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ +
Sbjct: 197 LHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK+KALKVL A+LY +E+ +I SK+R QIGSGDRSERIRTYNF Q R
Sbjct: 257 QQDEKSQHKNKSKALKVLRARLYNLEKQKIEDEISKMRKSQIGSGDRSERIRTYNFLQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+TDHR+ +T + + +M+ +LD F+DAL+ + + + S
Sbjct: 317 ITDHRINMTLYRLEHIMKEGDLDEFVDALIADDQANKLQQISS 359
>gi|116254019|ref|YP_769857.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
3841]
gi|119361588|sp|Q1MBB2.1|RF1_RHIL3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|115258667|emb|CAK09771.1| putative peptide chain release factor 1 [Rhizobium leguminosarum
bv. viciae 3841]
Length = 359
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 256/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRVYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AVTELADLETLLEDRSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|23015680|ref|ZP_00055449.1| COG0216: Protein chain release factor A [Magnetospirillum
magnetotacticum MS-1]
Length = 354
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 164/288 (56%), Positives = 213/288 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D+A EE + L+ + LLPKD+ADE++ I+EVRAGTGGEEA+L
Sbjct: 64 EMMNDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGTGGEEAAL 123
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MYERY+ GW+FEV+ V ++ + G KEASA I+G V+ +LKFESG+HRVQR
Sbjct: 124 FAAELFRMYERYASVHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFESGVHRVQR 183
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VAI+P+A+EVD++L + DLR D YRS GSGGQ NTT+SAVRVT
Sbjct: 184 VPATESQGRIHTSAATVAIMPEAEEVDIQLNDSDLRFDVYRSQGSGGQSVNTTDSAVRVT 243
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPTG+ ++ Q E+SQH NKA ALK+L A+LYE ERS R+ R Q+GSGDRSERI
Sbjct: 244 HIPTGLAVACQQEKSQHKNKATALKLLRARLYERERSAKDAERAAARKSQVGSGDRSERI 303
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
RTYNFPQGRVTDHR+ +T + I +M G+ LD I+AL+ + + +A
Sbjct: 304 RTYNFPQGRVTDHRINLTLYKIDAVMSGDALDELIEALVAADQAERLA 351
>gi|320169793|gb|EFW46692.1| peptide chain release factor 1 [Capsaspora owczarzaki ATCC 30864]
Length = 523
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 166/330 (50%), Positives = 232/330 (70%), Gaps = 9/330 (2%)
Query: 96 ANKELRKLRDSMHLISEL-------RTKQKEIDGLKSLIYECSEDKD--MLDMATEELCL 146
A KE+ L+ + ++ L K+K+ID L +++ + D M MA E
Sbjct: 177 ATKEINVLKGQIAALNPLVDALQRMTAKRKDIDDLDAMVEASRNENDVEMRKMAQSEWTD 236
Query: 147 AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
A+++ L+ LL L+PK++ D+R+ ILEVRAGTGG EASLF+ D+F MY+ Y++ +GW
Sbjct: 237 AVEQLYELEQELLNVLVPKNEVDDRNAILEVRAGTGGLEASLFSSDMFTMYQNYAEIRGW 296
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
KFEV+ ++ SD+ G+KEASA ISG GV+G LKFESG+HRVQRVP TE GRVHTS V+VA
Sbjct: 297 KFEVIDISRSDVGGFKEASATISGYGVFGHLKFESGVHRVQRVPQTESQGRVHTSTVTVA 356
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A +VD+ L DLRI+T R+ G+GGQH N T SA+RVTHIP+G+ + +Q++RSQH
Sbjct: 357 LLPEAQDVDIELNERDLRIETMRASGAGGQHVNKTESAIRVTHIPSGIAVHVQEDRSQHK 416
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
N+AKA VL A+LYE++R ++ R+ R+EQ+G+G RSERIRTYNFPQ RVTDHRV +T
Sbjct: 417 NRAKAYSVLRARLYEIQREKLAQERAAHRAEQVGTGSRSERIRTYNFPQDRVTDHRVNVT 476
Query: 387 HHAISDMMEGENLDIFIDALLLQQEMDAIA 416
H + + + GE LD I +L + + +A
Sbjct: 477 LHGVPEFLLGEGLDEIIASLRTHEHAEELA 506
>gi|390452279|ref|ZP_10237826.1| peptide chain release factor 1 [Nitratireductor aquibiodomus RA22]
gi|389659935|gb|EIM71674.1| peptide chain release factor 1 [Nitratireductor aquibiodomus RA22]
Length = 359
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 169/338 (50%), Positives = 249/338 (73%), Gaps = 10/338 (2%)
Query: 86 PEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145
PE P Y K E +L++ I ELR + E+D LKS++ + + DK+M ++A ++
Sbjct: 27 PE--PDVYVKLASEYSELQEVAGKIRELRQAEAELDDLKSMLADPATDKEMRELAEADVE 84
Query: 146 LAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQ 202
E R+++L + LLPKD+AD+++ ILE+RAGTGG+EA+LFA D+F+MYERY+
Sbjct: 85 GV---EGRIETLGEEMQILLLPKDEADDKNAILEIRAGTGGDEAALFAGDLFRMYERYAA 141
Query: 203 KKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSA 262
+KGW+ EVV V+E + GYKE A +SG GV+ +LKFESG+HRVQRVP TE GR+HTSA
Sbjct: 142 EKGWRVEVVSVSEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRVPATEAQGRIHTSA 201
Query: 263 VSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER 322
+VA+LP+A+++DV ++ +D+RIDT R+ G+GGQH NTT+SAVR+THIPTG+ + +Q E+
Sbjct: 202 ATVAVLPEAEDIDVDIKPDDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGIVV-LQAEK 260
Query: 323 SQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHR 382
SQH N+A+A+++L A+L++M+R + RS+ R Q+G+GDRSERIRTYNFPQGR+TDHR
Sbjct: 261 SQHQNRARAMQILRARLFDMQRMKAADERSEARRLQVGTGDRSERIRTYNFPQGRLTDHR 320
Query: 383 VGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+ +T + + ++EG +LD IDAL+ + +A G+
Sbjct: 321 INLTLYKLDRVIEG-DLDEVIDALISDHQAKLLAETGA 357
>gi|319407578|emb|CBI81228.1| peptide chain release factor 1 [Bartonella sp. 1-1C]
Length = 359
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/360 (47%), Positives = 252/360 (70%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L + +KE
Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAET--YVKLASEYAELQPIIAPIRTLNSLRKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + + L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IAELETIISDIQTDTEMRNLAQEELSSLSQKIQELEKELQILLLPKDIADEKSVIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA ++F+MYERY+ WK E++ +++ ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGNLFRMYERYANTHNWKVEIISLSDGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R+ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRSEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKTQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +L+ I+AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEG-DLNELINALISDHQTTLLTEMD 356
>gi|424872524|ref|ZP_18296186.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393168225|gb|EJC68272.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 359
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 256/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLEDRSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|402490003|ref|ZP_10836796.1| peptide chain release factor 1 [Rhizobium sp. CCGE 510]
gi|401811342|gb|EJT03711.1| peptide chain release factor 1 [Rhizobium sp. CCGE 510]
Length = 359
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 175/367 (47%), Positives = 255/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK E + +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEALSASEGEAGGYKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPATEAGGRIHTSAATVAVLPEAEEIDIEIRQEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE ++ +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRITDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|424897195|ref|ZP_18320769.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393181422|gb|EJC81461.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 359
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 175/364 (48%), Positives = 250/364 (68%), Gaps = 7/364 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKANA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 ELADLETLLDDKSVDREMRDLAELELPEVKEQIEALEHEMQILLLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R Q
Sbjct: 238 NTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE ++ +DAL+ + +A
Sbjct: 297 VGSGDRSERIRTYNFPQGRITDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQLAQL 355
Query: 419 GSTQ 422
G Q
Sbjct: 356 GEQQ 359
>gi|298292694|ref|YP_003694633.1| peptide chain release factor 1 [Starkeya novella DSM 506]
gi|296929205|gb|ADH90014.1| peptide chain release factor 1 [Starkeya novella DSM 506]
Length = 365
Score = 343 bits (881), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 166/333 (49%), Positives = 233/333 (69%), Gaps = 3/333 (0%)
Query: 75 RSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A +E+ L P+A Y + ++E +L + LR+ ++++ ++L E + D
Sbjct: 15 RHAEIEHALSANPDAET--YVRLSREFAELSPLTDSVKALRSAERQLTDARTLAAEAAGD 72
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
K+M +A EE+ ++ + L + +LLPKD DER ILEVRAGTGG+EA+LFA D+
Sbjct: 73 KEMAALAEEEVASLEEQVETLTHAVRLALLPKDAMDERGVILEVRAGTGGDEAALFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ GW EV+ +TE G+KE AA+ G G Y KLKFESG+HRVQRVP TE
Sbjct: 133 FRMYERFAGLNGWSVEVLSLTEGTAGGFKEIVAALHGSGAYAKLKFESGVHRVQRVPETE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+ ++VD+ + DLRID +R+ G+GGQH N T SAVR+TH+PTG
Sbjct: 193 GSGRIHTSAATVAVLPEVEDVDIAINESDLRIDVFRASGAGGQHVNKTESAVRITHLPTG 252
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+++QDERSQH NKA+A+ +L A++YE ER + +R+ R Q+GSGDRSERIRTYNF
Sbjct: 253 TVVAVQDERSQHKNKARAMGMLRARIYEAEREKRDSARASERKVQVGSGDRSERIRTYNF 312
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
PQGRVTDHR+G+T H + +++ GE L +DAL
Sbjct: 313 PQGRVTDHRIGLTLHKLPEILSGEGLGELVDAL 345
>gi|85709577|ref|ZP_01040642.1| protein chain release factor A [Erythrobacter sp. NAP1]
gi|85688287|gb|EAQ28291.1| protein chain release factor A [Erythrobacter sp. NAP1]
Length = 355
Score = 343 bits (881), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 170/360 (47%), Positives = 251/360 (69%), Gaps = 10/360 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
++I +R+ I R A LE + E+ A+++ +L + E++ ++EI+
Sbjct: 1 MQIPPERLDQIANRFAELEARMASGTLEGEEFVAASRDYAELEPVAKIAGEVKAMREEIE 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCL---AIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
GL+ ++ D +M MA EEL A+ E++R SL + +LLP+D AD + +LE+R
Sbjct: 61 GLEEMLA----DPEMKAMAEEELSAIREALPEKER--SLAI-ALLPRDRADAKPAMLEIR 113
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LFA D+F+MYE+Y+ ++GW+ E V ++ S++ G+KE A +SG GV+ KLK
Sbjct: 114 AGTGGDEAALFAGDLFRMYEKYAAEQGWRVEPVSMSASEVGGFKEIVANVSGQGVFAKLK 173
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP+TE GR+HTSA +VA+LP+ DEVDV++ DL+IDTYR+ G+GGQH
Sbjct: 174 FESGVHRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVQIDPGDLKIDTYRASGAGGQHV 233
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SA+R+TH PTG+ ++ QD RSQH N+ KA++VL A+LYE R + ++ R
Sbjct: 234 NTTDSAIRITHEPTGLVVTCQDGRSQHKNREKAMQVLRARLYEKTRDEAQGAEAEARKAM 293
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGRVTDHR+G+T H + +++ G LD +DAL+ + E +A+
Sbjct: 294 VGSGDRSERIRTYNFPQGRVTDHRIGLTLHKLEEVLAGPGLDELVDALIAEDEGKRLAAL 353
>gi|92116091|ref|YP_575820.1| peptide chain release factor 1 [Nitrobacter hamburgensis X14]
gi|119361567|sp|Q1QQY7.1|RF1_NITHX RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91798985|gb|ABE61360.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrobacter
hamburgensis X14]
Length = 361
Score = 343 bits (881), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 236/347 (68%), Gaps = 3/347 (0%)
Query: 75 RSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LEN L++Q A Y + +EL +L + + R + EI G+ ++I + + D
Sbjct: 15 RHAALENELLSQISAE--RYVQMTRELSELNPVVEAVKNWRAVKTEIAGIDAMIADPATD 72
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+M MA E L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+
Sbjct: 73 AEMRAMAEAERPALGARGDELAQKIRVALLPKDAMDERNVMLEIRAGTGGDEASLFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK E + +E + GYKE A + G G Y KLKFESG+HRVQRVP TE
Sbjct: 133 FRMYERFAGLQGWKVEAISASEGTMGGYKEIVAEVRGRGAYAKLKFESGVHRVQRVPDTE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GRVHTSA +VA+LP+A+EVDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 193 TQGRVHTSAATVAVLPEAEEVDVDIKTDDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 252
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ + +QD RSQH N+A A+ +L +++Y+ ER RI+ +RS R +Q+GSGDRSERIRTYNF
Sbjct: 253 IVVMMQDSRSQHKNRASAMNILRSRIYDAERQRINAARSADRKDQVGSGDRSERIRTYNF 312
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
PQGRVTDHR+ +T + + ++ G+ L IDAL + + +A+ G
Sbjct: 313 PQGRVTDHRINLTLYKLPQVIAGDALHELIDALTTEHQAAQLATEGG 359
>gi|163759877|ref|ZP_02166961.1| peptide chain release factor 1 [Hoeflea phototrophica DFL-43]
gi|162282835|gb|EDQ33122.1| peptide chain release factor 1 [Hoeflea phototrophica DFL-43]
Length = 361
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 177/363 (48%), Positives = 245/363 (67%), Gaps = 10/363 (2%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
L + I+ +E+R +E R A + PEA Y K E L+ + I L
Sbjct: 4 LPTEKIRELERRFGEVEARMAAGPD----PEA----YVKLASEYSDLQPLVDQIRALDAA 55
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
E L++++ + + DK+M D+A EL L+ + LLPKD ADER ILE
Sbjct: 56 LAERSDLEAMLQDTANDKEMRDLAESELRSTKVRIGELEEQIEIMLLPKDAADERSAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ + WK EV+ +E + GYKE A ISG GV+ +
Sbjct: 116 IRAGTGGSEAALFAGDLFRMYERYASSRKWKVEVLSASEGEAGGYKEIIATISGKGVFAR 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R+ED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETESGGRIHTSAATVAVLPEAEDIDIEVRSEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+TH+PTG+ ++ E+SQH N+A+A++VL A+LY+MER R RS+ R
Sbjct: 236 HVNTTDSAVRITHLPTGLVVT-SSEKSQHQNRARAMQVLRARLYDMERQRADDERSQSRR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MM GE +D +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMMGE-IDEVVDALISDHQAGQLA 353
Query: 417 SFG 419
+ G
Sbjct: 354 TLG 356
>gi|119361587|sp|Q2K3T1.2|RF1_RHIEC RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 359
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 177/364 (48%), Positives = 248/364 (68%), Gaps = 7/364 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKAVA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E+ L++L+ + S D++M D+A EL + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 ELADLETLLEDKSVDREMRDLAELELPEVRARIEALEQEMQILLLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFASEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R Q
Sbjct: 238 NTTDSAVRITHLPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+ + +A
Sbjct: 297 VGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQLAQL 355
Query: 419 GSTQ 422
G Q
Sbjct: 356 GEQQ 359
>gi|395791488|ref|ZP_10470946.1| peptide chain release factor 1 [Bartonella alsatica IBS 382]
gi|395408851|gb|EJF75461.1| peptide chain release factor 1 [Bartonella alsatica IBS 382]
Length = 359
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 175/360 (48%), Positives = 250/360 (69%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P+A Y K E +L+ + I L E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAKNPDAET--YVKLASEYAELQPIVASIRTLNDLSAE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M D+A EEL L + ++ + L LLPKD ADE+ I+E+RA
Sbjct: 59 IAELETIINDKLTDIEMRDLAQEELPLLNQKIEQFEQKLQILLLPKDIADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MY RY+ WK E+V + E ++ GYKE A+ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYARYADAHNWKVEIVSLNEGEVGGYKEIIASISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE SGR+HTSA +VA+LP+A+E+D+++R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETSGRIHTSAATVAVLPEAEEIDIKIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+ +AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRTRALQILRARLFDIERQKAENERSTSRKSQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD FI AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLDEFIHALISNHQTALLMEMD 356
>gi|304394129|ref|ZP_07376052.1| peptide chain release factor 1 [Ahrensia sp. R2A130]
gi|303293569|gb|EFL87946.1| peptide chain release factor 1 [Ahrensia sp. R2A130]
Length = 358
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 168/331 (50%), Positives = 235/331 (70%), Gaps = 9/331 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA---TEELCLAID 149
Y K KE +L + I E++ Q E L ++ + D +M +MA E L AI+
Sbjct: 30 YVKLAKEYAELDPVVIKIGEMQAAQSEFADLAGMLADGDTDAEMKEMAQAEMEPLKAAIE 89
Query: 150 E-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
E E LQ LLL P+D+AD ++ ILE+RAGTGG EA+LFA D+F+MY+R+++ GWK
Sbjct: 90 EHEAELQILLL----PRDEADAKNAILEIRAGTGGSEAALFAGDLFRMYQRHAETSGWKV 145
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
+V+ + ++ GYKE A+I+G GV+ +LKFESG+HRVQRVP TE GRVHTSA +VA+L
Sbjct: 146 DVLSESAGEVGGYKEIIASINGTGVFARLKFESGVHRVQRVPETESGGRVHTSAATVAVL 205
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
P+A++VD+ +RNED+RIDT R+ G+GGQH NTT+SAVR+THIPTG+ + + E+SQH N+
Sbjct: 206 PEAEDVDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGVVV-LSTEKSQHQNR 264
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
A A+K L +LY+MER ++ R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T +
Sbjct: 265 ANAMKELRTRLYDMERQKVDQERADSRKGQVGSGDRSERIRTYNFPQGRVSDHRINLTLY 324
Query: 389 AISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ M+ GE LD +DAL+ + + +AS G
Sbjct: 325 KLDKMIAGEGLDEMLDALITDHQANLLASLG 355
>gi|75674575|ref|YP_316996.1| peptide chain release factor 1 [Nitrobacter winogradskyi Nb-255]
gi|119361570|sp|Q3SVP7.1|RF1_NITWN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|74419445|gb|ABA03644.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrobacter
winogradskyi Nb-255]
Length = 358
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 232/328 (70%), Gaps = 2/328 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELCLAIDEE 151
Y + +EL +L + + R EI G+ ++I + + D +M MA E L +
Sbjct: 30 YVQMTRELAELNPIVDAVKNWRAVTAEIAGIDAMIADPATDAEMRAMAEAERPALEARND 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ +Q + + +LLPKD DER+ +LEVRAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 90 ELMQKIRV-ALLPKDAMDERNVMLEVRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVI 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E + GYKE A + G G Y ++KFESG+HRVQRVP TE GRVHTSA +VA+LP+A
Sbjct: 149 SASEGTMGGYKEIVAQVQGRGAYARMKFESGVHRVQRVPDTEAQGRVHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVDV +R +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ +S+QD RSQH N+A A
Sbjct: 209 EEVDVDIRPDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVSMQDSRSQHKNRASA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ +L +++Y+ ER RI+ +RS R +Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 269 MNILRSRIYDAERQRINAARSADRKDQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLP 328
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFG 419
++ G+ L IDAL + + +A+ G
Sbjct: 329 QVIAGDALHELIDALTTEHQAAQLAAEG 356
>gi|334317369|ref|YP_004549988.1| peptide chain release factor 1 [Sinorhizobium meliloti AK83]
gi|334096363|gb|AEG54374.1| Peptide chain release factor 1 [Sinorhizobium meliloti AK83]
Length = 360
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 181/373 (48%), Positives = 258/373 (69%), Gaps = 25/373 (6%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQP---VVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA ++F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGNLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
S G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH N+AKA++VL ++LY+MER R
Sbjct: 229 SSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQRADS 287
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE +D +DALL
Sbjct: 288 ERSADRRSQVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGE-IDDVVDALLAD 346
Query: 410 QEMDAIASFGSTQ 422
+ +A G Q
Sbjct: 347 YQASQLALLGERQ 359
>gi|297182853|gb|ADI19004.1| protein chain release factor a [uncultured alpha proteobacterium
HF0070_05I22]
Length = 334
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/327 (51%), Positives = 230/327 (70%), Gaps = 8/327 (2%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
+ERR L E S + ++EL +LR I +R + E+ +++ E +
Sbjct: 11 LERRQEVETKLSRSAELSSKALADLSRELSELRPVCEQIELVRALESELKDAITMVVEAA 70
Query: 132 EDKDMLDMATEELCLAID----EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
D +M MA E+ L + E++RLQ LLL PKD D R+ ILEVRAGTGG+EA+
Sbjct: 71 GDDEMQAMAEAEVTLLKERIPIEKERLQLLLL----PKDKDDSRNAILEVRAGTGGDEAA 126
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LF ++F MY+R++ K GW+FEV+ V+E+ + GYKEA+A ISG+ V+ +LKFESG+HRVQ
Sbjct: 127 LFGANLFSMYQRFAAKNGWRFEVMEVSETGIGGYKEATATISGIDVFARLKFESGVHRVQ 186
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTSA +VA+LP+A+EVD+ + DLRID +RS G GGQ NTT+SAVR+
Sbjct: 187 RVPETEAGGRIHTSAATVAVLPEAEEVDIDIDENDLRIDVFRSSGPGGQSVNTTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ +S QDE+SQH N+AKA+K+L A+LY+ ER+R+ R+ R Q+GSGDRSER
Sbjct: 247 THMPTGIVVSQQDEKSQHKNRAKAMKILRARLYDAERARVESERAAARKGQVGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMM 394
IRTYNFPQGRVTDHR+ +T + + +M
Sbjct: 307 IRTYNFPQGRVTDHRINLTLYKLDRVM 333
>gi|83310717|ref|YP_420981.1| protein chain release factor A [Magnetospirillum magneticum AMB-1]
gi|119361556|sp|Q2W6V3.1|RF1_MAGMM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|82945558|dbj|BAE50422.1| Protein chain release factor A [Magnetospirillum magneticum AMB-1]
Length = 354
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/288 (56%), Positives = 213/288 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D+A EE + L+ + LLPKD+ADE++ I+EVRAGTGGEEA+L
Sbjct: 64 EMMNDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGTGGEEAAL 123
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MYERY+ GW+FEV+ V ++ + G KEASA I+G V+ +LKFESG+HRVQR
Sbjct: 124 FAAELFRMYERYAGLHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFESGVHRVQR 183
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VAI+P+A+EVD++L + DLR D YRS GSGGQ NTT+SAVRVT
Sbjct: 184 VPATESQGRIHTSAATVAIMPEAEEVDIQLNDSDLRFDVYRSQGSGGQSVNTTDSAVRVT 243
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPTG+ ++ Q E+SQH NKA ALK+L A+LYE ERS R+ R Q+GSGDRSERI
Sbjct: 244 HIPTGLAVACQQEKSQHKNKATALKLLRARLYERERSAKDAERAAARKSQVGSGDRSERI 303
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
RTYNFPQGRVTDHR+ +T + I +M G+ LD ++AL+ + + +A
Sbjct: 304 RTYNFPQGRVTDHRINMTLYKIDAVMSGDALDELVEALVAADQAERLA 351
>gi|86359340|ref|YP_471232.1| peptide chain release factor 1 [Rhizobium etli CFN 42]
gi|86283442|gb|ABC92505.1| peptide chain release factor 1 protein [Rhizobium etli CFN 42]
Length = 351
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/353 (49%), Positives = 242/353 (68%), Gaps = 7/353 (1%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+ERR +E ++ A PA Y K E +L+ + I E+ L++L+ +
Sbjct: 4 LERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKAVAELADLETLLED 60
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S D++M D+A EL + L+ + LLPKD ADE+ ILE+RAGTGG EA+LF
Sbjct: 61 KSVDREMRDLAELELPEVRARIEALEQEMQILLLPKDAADEKSAILEIRAGTGGSEAALF 120
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLKFESG+HRVQRV
Sbjct: 121 AGDLFRMYERFASEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGVHRVQRV 180
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR+TH
Sbjct: 181 PETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDSAVRITH 240
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R Q+GSGDRSERIR
Sbjct: 241 LPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSGDRSERIR 299
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
TYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+ + +A G Q
Sbjct: 300 TYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQLAQLGEQQ 351
>gi|395792483|ref|ZP_10471910.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713144|ref|ZP_17687404.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423800|gb|EJF89989.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432456|gb|EJF98442.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 359
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/360 (48%), Positives = 252/360 (70%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + Q P A Y K E +L+ + I L +E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAQSPNAET--YVKLASEYAELQPIVSPIRALNALYRE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL L + ++ + L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETIINDKLTDIEMRNLAQEELPLLHQKIEQFEQELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV ++E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLSEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE SGR+HTSA +VA+LP+A+E+D+ +R+ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETSGRIHTSAATVAVLPEAEEIDIEIRSEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGR+TDHR+ +T + + ++EG +L+ I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRITDHRINLTLYKLDRILEG-DLEELIHALISNHQTALLTEMD 356
>gi|406990113|gb|EKE09797.1| hypothetical protein ACD_16C00105G0010 [uncultured bacterium]
Length = 359
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 175/349 (50%), Positives = 245/349 (70%), Gaps = 12/349 (3%)
Query: 73 ERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE 132
E+ S+ +EN P+E++K +KE L I E + ++ L+ L+ + S
Sbjct: 19 EKLSSVVEN--------PSEFAKLSKEYSDLTPVAEKIMEWQLLNRDHKNLEELLKDPSL 70
Query: 133 DKDMLDMATEELCLAIDEE--KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
DK++ DMA ++L +I E+ KRL + L LLPKD D+++ ILEVRAGTGGEEA+LFA
Sbjct: 71 DKELKDMACDDLQ-SIHEKLPKRLHEIKL-LLLPKDVDDDKNAILEVRAGTGGEEAALFA 128
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+ +MY+RY++ +GWKFE++ +++ L G KEASA+ISG GV+ KLKFESG+HRVQR+P
Sbjct: 129 ADLLRMYQRYAEIQGWKFELMHESDTGLGGIKEASASISGKGVFAKLKFESGVHRVQRIP 188
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA+LP+ +EVD+ + +DLRID +RS G GGQ NTT+SAVR+TH+
Sbjct: 189 ATEAGGRIHTSAATVAVLPEVEEVDIHIEEKDLRIDVFRSSGPGGQSVNTTDSAVRITHL 248
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
P+G+ + QDE+SQH NK KALK+L A+LYE +R+ R+ R QIGSGDRSERIRT
Sbjct: 249 PSGVVVQQQDEKSQHKNKEKALKILRARLYEHQRAERDAERAAHRKSQIGSGDRSERIRT 308
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YNFPQGRVTDHR+ +T + + +M+G LD I L+ + + +A G
Sbjct: 309 YNFPQGRVTDHRINLTLYKLDRVMDGSALDEIIQPLISENQAARLADVG 357
>gi|406706711|ref|YP_006757064.1| peptide chain release factor 1 (bRF-1) [alpha proteobacterium
HIMB5]
gi|406652487|gb|AFS47887.1| bacterial peptide chain release factor 1 (bRF-1) [alpha
proteobacterium HIMB5]
Length = 356
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 172/332 (51%), Positives = 238/332 (71%), Gaps = 11/332 (3%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLA 147
AE SK +L ++ D S + + ++ID L+ +I + D ++ MA EEL L
Sbjct: 32 AEKSKEYSDLNEIIDEAK--SYISFENEKID-LEKIINDKESDNEIKSMAEQELEELKLK 88
Query: 148 IDE-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
D+ EK+L+ LL PKD+AD+++ I+E+RAGTGG EASLFA D+FKMYE+ KK W
Sbjct: 89 YDKSEKKLKFFLL----PKDEADKKNAIIEIRAGTGGLEASLFAGDLFKMYEKVCNKKKW 144
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
E++ +++S+ G KE A+I G +Y LK+ESG+HRVQRVP TE GRVHTSA +VA
Sbjct: 145 SLELISISKSEAGGLKEVIASIRGSNIYSTLKYESGVHRVQRVPDTETQGRVHTSAATVA 204
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A+EVDV++ + DLRID +R+GG GGQ NTT+SAVR+THIPTG+++S QDE+SQH
Sbjct: 205 VLPEAEEVDVKINDSDLRIDVFRAGGPGGQSVNTTDSAVRITHIPTGISVSQQDEKSQHK 264
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
NKAK +K+L +++YE ERSRI RSK R +IG+GDRSERIRTYNFPQGRVTDHR+ +T
Sbjct: 265 NKAKGMKILRSRIYEFERSRIDQERSKDRKTKIGTGDRSERIRTYNFPQGRVTDHRINLT 324
Query: 387 HHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
H + + +EGE D I+ L LQ + ++++
Sbjct: 325 LHKLEEFLEGEAFDEMIETLTLQAQEESLSKL 356
>gi|414175690|ref|ZP_11430094.1| peptide chain release factor 1 [Afipia broomeae ATCC 49717]
gi|410889519|gb|EKS37322.1| peptide chain release factor 1 [Afipia broomeae ATCC 49717]
Length = 361
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 162/329 (49%), Positives = 226/329 (68%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R+ EI G+ +LI + + + DM MA E
Sbjct: 32 YVRITRELSELTPVVDAVKAYRSAADEISGIDALIADSTTEPDMRAMAESERPQLEARRD 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK +++
Sbjct: 92 ELAQDIRIALLPKDAMDERNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVDLIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 ASEGTMGGYKEIVAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 EVDVAIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ ER RI RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAERQRIDSERSAERKGQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFGST 421
++ G+ L IDAL + + +A GST
Sbjct: 332 VIAGDALGELIDALTTEHQAKLLAEQGST 360
>gi|308805082|ref|XP_003079853.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri]
gi|116058310|emb|CAL53499.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri]
Length = 1134
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/359 (50%), Positives = 254/359 (70%), Gaps = 6/359 (1%)
Query: 50 RSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHL 109
R+Y+T+ + +I + + A +R L L++ P+A+ +ANKEL +L +
Sbjct: 531 RTYTTK--TAPVIDALYAQGEAATKRHDELIALISAPDAAIDRVIEANKELARLDPLVKQ 588
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK-SLLPKDDA 168
S +++ + E + L L S++KD+ ++A EEL AID + Q L+ LLP+DDA
Sbjct: 589 YSMVKSLRDERESLDELA-RTSDEKDITELAREEL-RAIDAKLPEQEHALRIMLLPRDDA 646
Query: 169 DERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 228
D+R ILEVRAG GG+EA+LFA ++F+MY +++K GW+FE + ++E+D +G +E SA +
Sbjct: 647 DDRGAILEVRAGAGGDEAALFAAELFRMYALHARKSGWRFETLNMSETDGKGIREGSAEV 706
Query: 229 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 288
G GV+G+LKFESG+HRVQRVP TE GRVHTS SVA+LP A EVD+ +R+ED+RI+T
Sbjct: 707 LGDGVFGRLKFESGVHRVQRVPETETQGRVHTSTASVAVLPHAAEVDMDIRDEDVRIETM 766
Query: 289 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH 348
R+ G+GGQH NTTNSAVR+TH+PTG+T++IQDERSQH NKAKA VL ++LY+MER ++
Sbjct: 767 RASGAGGQHVNTTNSAVRLTHLPTGITVAIQDERSQHKNKAKAFSVLKSRLYDMEREKLA 826
Query: 349 LSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRV-GITHHAISDMMEGENLDIFIDAL 406
R++LRS IG+GDRSE++RTYNFPQGRV DHRV G I M+G LD +D L
Sbjct: 827 NERAELRSSLIGTGDRSEKVRTYNFPQGRVKDHRVDGNVSGDIKGFMDGFLLDDLVDKL 885
>gi|241206502|ref|YP_002977598.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860392|gb|ACS58059.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 359
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/367 (47%), Positives = 256/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRVYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M ++A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AVAELADLETLLEDRSVDREMRELAELELPEVKEQIEVLEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|402848548|ref|ZP_10896805.1| Peptide chain release factor 1 [Rhodovulum sp. PH10]
gi|402501295|gb|EJW12950.1| Peptide chain release factor 1 [Rhodovulum sp. PH10]
Length = 359
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 242/352 (68%), Gaps = 1/352 (0%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
++ A+ R A L+ +++ + SP +++ ++EL +L + I +EID + ++
Sbjct: 6 KLAALVTRHAALQAELSE-KTSPEVFARLSRELSELTPVVEAIDRYAAVLREIDDVDEMM 64
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+ + D ++ +A E + +RL+ L +L+PKD D R+ I+E+RAGTGG+EA+
Sbjct: 65 TDAATDAELRAVAASERSTLEETRERLEQELRLALIPKDAMDARNVIVEIRAGTGGDEAA 124
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA D+F+MYERY+ +GWK E+V +E + GYKE A I G G + +LKFESG+HRVQ
Sbjct: 125 LFAGDLFRMYERYAALQGWKTEIVSASEGTMGGYKEIVAEIRGAGAFARLKFESGVHRVQ 184
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE SGR+HTSA +VA+LP+A+EVDV + +DL IDT RS G+GGQH N T SA+RV
Sbjct: 185 RVPETEASGRIHTSAATVAVLPEAEEVDVAIDEKDLEIDTMRSSGAGGQHVNKTESAIRV 244
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
H+P+G+ + +Q+ERSQH N+AKA+ +L AKLY+ ER R R+ R Q+GSGDRSER
Sbjct: 245 KHVPSGIVVFVQEERSQHRNRAKAMAMLRAKLYDAERQRRDSERAADRRGQVGSGDRSER 304
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGRVTDHR+G+T + + +M+GE L +DAL+ + +A+ G
Sbjct: 305 IRTYNFPQGRVTDHRIGLTLYKLPQVMQGEALGEIVDALMAEHNAALLAAEG 356
>gi|254455525|ref|ZP_05068954.1| peptide chain release factor 1 [Candidatus Pelagibacter sp.
HTCC7211]
gi|207082527|gb|EDZ59953.1| peptide chain release factor 1 [Candidatus Pelagibacter sp.
HTCC7211]
Length = 357
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 252/357 (70%), Gaps = 4/357 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
IK +E+ +L + + LE ++ + +++ +KE + + + + + +K+
Sbjct: 4 IKTIEELIL----KHSTLEKDLSSRDLEKKVFAEKSKEYSDISEVIVSAKKYLSYEKDKK 59
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L++++ + S D+++ +A EL DE +R + L LLPKD+AD+++ I+E+RAGT
Sbjct: 60 ELENILNDNSVDEELKKLADTELLELKDEYERNEKKLKLFLLPKDEADKKNAIIEIRAGT 119
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG EASLFA D+FKMYE+ S KK W E++ ++ SD G KE A+I G +Y LK+ES
Sbjct: 120 GGLEASLFASDLFKMYEKVSHKKKWALELISISRSDAGGLKEVIASIKGTNIYSTLKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GRVHTSA +VA+LP+A+EVD+++ DLRID +R+GG GGQ NTT
Sbjct: 180 GVHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDLKINEADLRIDVFRAGGPGGQSVNTT 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+THIPTG+T+S QDE+SQH NKAK +K+L ++LYE+ERSRI RS+ R +IG+
Sbjct: 240 DSAVRITHIPTGLTVSQQDEKSQHKNKAKGMKILRSRLYELERSRIDQERSQDRKTKIGT 299
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+ +T H + + +EGE D I++L LQ + D++++
Sbjct: 300 GDRSERIRTYNFPQGRVTDHRINLTLHRLEEFLEGEAFDEMIESLTLQAQEDSLSNL 356
>gi|426401185|ref|YP_007020157.1| peptide chain release factor 1 [Candidatus Endolissoclinum patella
L2]
gi|425857853|gb|AFX98889.1| peptide chain release factor 1 [Candidatus Endolissoclinum patella
L2]
Length = 356
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/318 (50%), Positives = 232/318 (72%), Gaps = 8/318 (2%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-KRLQSLLLKS------- 161
+SE+ +I+ LK E ++ ++D E+ ++ E +R++S L +
Sbjct: 39 LSEITPVVTKIENLKRAWAELADTVALVDSKDAEMNKLVESEIERIKSRLPELERDVQIL 98
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD+AD+++ ILEVRAG GG EA+LFA D+F MY+RYSQK+GW+FE++ V+E++L GY
Sbjct: 99 LLPKDEADKKNVILEVRAGIGGNEAALFAADLFSMYQRYSQKRGWRFEIMNVSENELDGY 158
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KEA A+I+GVGVY LKFESG HRVQRVP+TE GR+HTSA +VA+LP+A E+DV + +
Sbjct: 159 KEAIASITGVGVYACLKFESGTHRVQRVPVTENQGRIHTSAATVAVLPEAKEIDVHIEEK 218
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
D+RID YRS G+GGQH NTT+SAVR+THIPTG+ ++ QDE+SQH N+AKA++++ ++LY
Sbjct: 219 DIRIDVYRSRGAGGQHVNTTDSAVRITHIPTGVVVTQQDEKSQHKNRAKAMRIMRSRLYN 278
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
M+R +R+ R Q+GSG+RSERIRTYNFPQGRVTDHR+ +T + + ++ GE L+
Sbjct: 279 MQRQASDEARAAHRKSQVGSGNRSERIRTYNFPQGRVTDHRINLTIYKLDQVINGEALNE 338
Query: 402 FIDALLLQQEMDAIASFG 419
I+ L+ E + +A
Sbjct: 339 LIEPLISDDEAERLAKIN 356
>gi|227823188|ref|YP_002827160.1| peptide chain release factor 1 [Sinorhizobium fredii NGR234]
gi|227342189|gb|ACP26407.1| peptide chain release factor 1 [Sinorhizobium fredii NGR234]
Length = 352
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 243/353 (68%), Gaps = 7/353 (1%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+ERR A +E ++ A P+ Y K E +L+ + I E+ ++ L+ +
Sbjct: 4 LERRFAEIEARMS---AGPSADVYVKLASEYSELQPVVTKIRAYEKATAELADIEVLLSD 60
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+ DK+M D+A E + + L+ + LLPKD ADE+ ILE+RAGTGG EA+LF
Sbjct: 61 RATDKEMRDLAEMERPEVEERIEALEEEIQILLLPKDAADEKSAILEIRAGTGGSEAALF 120
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MYERY+ KGW+ EV+ +E + GYKE A +SG GV+ +LKFESG+HRVQRV
Sbjct: 121 AGDLFRMYERYAAAKGWRVEVLSASEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRV 180
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR+TH
Sbjct: 181 PETEASGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGGQHVNTTDSAVRITH 240
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ ++ E+SQH N+AKA++VL ++L++MER R RS R Q+GSGDRSERIR
Sbjct: 241 LPTGIVVT-SSEKSQHQNRAKAMQVLRSRLFDMERQRADSERSADRKSQVGSGDRSERIR 299
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
TYNFPQGR+TDHR+ +T + + MMEGE +D +DALL + +A G Q
Sbjct: 300 TYNFPQGRLTDHRINLTLYKLDRMMEGE-IDEVVDALLADHQASQLALLGERQ 351
>gi|49475009|ref|YP_033050.1| peptide chain release factor 1 [Bartonella henselae str. Houston-1]
gi|61214620|sp|Q6G5T7.1|RF1_BARHE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|49237814|emb|CAF27009.1| Peptide chain release factor 1 [Bartonella henselae str. Houston-1]
Length = 359
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/360 (48%), Positives = 248/360 (68%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAEI--YVKLASEYAELQPIVSSIRALNALYGE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITDLETIISDKLTDVEMRTLAQEELPLLCQKMEQLEQKLQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ + WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASRNWKVEVVSLNEGEVGGYKEIIATISGRGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAENERSASRKSQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVLEG-DLDELIHALISDHQTALLMEMD 356
>gi|88657945|ref|YP_507408.1| peptide chain release factor 1 [Ehrlichia chaffeensis str.
Arkansas]
gi|119361539|sp|Q2GGM5.1|RF1_EHRCR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|88599402|gb|ABD44871.1| peptide chain release factor 1 [Ehrlichia chaffeensis str.
Arkansas]
Length = 359
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/341 (48%), Positives = 239/341 (70%), Gaps = 1/341 (0%)
Query: 79 LENLVNQP-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L++++ P + S + A+KE +L + +I + QK+I GL+ LI D ++
Sbjct: 17 LKSMLEDPSQLSVDSFVAASKEYSELLPVISVIDQYNILQKDIAGLEELINNPETDHELK 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EE + +++ L SLLPKD D R+ ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 SLAKEEFYERQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGTGGEEAALFVTDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WKFE + + + + G+KE S ISG V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 TKYAEQKNWKFEQINSSSTGIGGHKEISLCISGSNVFARLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIP+G+ +
Sbjct: 197 LHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK+KALKVL A+LY +E+ + S++R QIGSGDRSERIRTYNFPQ R
Sbjct: 257 QQDEKSQHKNKSKALKVLRARLYNLEKQKRDAEISQMRKSQIGSGDRSERIRTYNFPQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+TDHR+ +T + + D+M+ NLD FI+AL+ + E + + +
Sbjct: 317 ITDHRINLTLYRLDDIMKEGNLDEFIEALIAEDEANKLKNL 357
>gi|240849863|ref|YP_002971251.1| peptide chain release factor 1 [Bartonella grahamii as4aup]
gi|240266986|gb|ACS50574.1| peptide chain release factor 1 [Bartonella grahamii as4aup]
Length = 358
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 175/363 (48%), Positives = 249/363 (68%), Gaps = 16/363 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
L D ++ +E+R IER+ + P A Y K E +L+ + I L
Sbjct: 4 LPQDRMRQLEKRFEIIERQ------MTTNPNAET--YVKLASEYAELQPVIASIRALNAL 55
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
KEI L+++I + D +M ++A EEL L + ++ + L LLPKD ADE++ I+E
Sbjct: 56 YKEITELETIINDKQTDVEMRNLAQEELPLLYKKVEQFEKELQILLLPKDVADEKNAIVE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LF+ D+F+MYERY+ WK EV+ ++E ++ GYKE A ISG GV+ K
Sbjct: 116 IRAGTGGSEAALFSGDLFRMYERYAHAHHWKVEVISLSEGEVGGYKEIIATISGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LK+ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQ
Sbjct: 176 LKYESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIDIRPEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRK 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQ 410
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD + AL+ L
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLDELLHALISDHQTTLLM 353
Query: 411 EMD 413
EMD
Sbjct: 354 EMD 356
>gi|338708566|ref|YP_004662767.1| peptide chain release factor 1 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336295370|gb|AEI38477.1| peptide chain release factor 1 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 358
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 172/361 (47%), Positives = 245/361 (67%), Gaps = 8/361 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I I R+ AI R L+ + +P+ + ++E ++ + ++E
Sbjct: 1 MIAISPDRLAAIVARREELQAEMARPDLDSSRLVALSREYAEVEPVALAAQHVSALREET 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELC---LAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
+ L+S+ + ED ++ MA EEL A+ + +R +L SLLP+D ADER ILE+
Sbjct: 61 EMLESMTRD--EDPELQAMAVEELSDKKQALSDAERALAL---SLLPRDAADERSAILEI 115
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA+LF D+ +MY RY++ GW+ E++ + ++L GYKE +I+G GV+ +L
Sbjct: 116 RAGTGGDEAALFGGDLLRMYSRYAEDHGWRVELISASAAELGGYKEVVISITGAGVFARL 175
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV + DLRID +RS G GGQ
Sbjct: 176 KFESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVAIDERDLRIDIFRSSGPGGQS 235
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVR+THIP+G+ +S QDE+SQH NKAKA+KVL A+LYE ER R+H R+ R
Sbjct: 236 VNTTDSAVRITHIPSGIVVSQQDEKSQHKNKAKAMKVLRARLYERERERLHSERAGQRKS 295
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++ G L+ I AL+ + E + +AS
Sbjct: 296 MVGSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILAGPALEEVIAALISEDEAERLAS 355
Query: 418 F 418
Sbjct: 356 L 356
>gi|357029044|ref|ZP_09091057.1| peptide chain release factor 1 [Mesorhizobium amorphae CCNWGS0123]
gi|355536567|gb|EHH05837.1| peptide chain release factor 1 [Mesorhizobium amorphae CCNWGS0123]
Length = 359
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 170/359 (47%), Positives = 248/359 (69%), Gaps = 3/359 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I + R+ + +R LE ++ A+ A Y + E +++ + I LR + E
Sbjct: 1 MINLPRDRMDQVVKRFDMLEAQMSAGPAADA-YVRMASEYADIQEMVARIRALRAAEHEQ 59
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
L++++ + D +M +A +L + + LQ + LLPKD ADE++ ILE+RAG
Sbjct: 60 ADLEAMLADKGTDAEMRALAEADLPEVKERIEALQKDIQILLLPKDAADEKNAILEIRAG 119
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MYERY+ +GW+FEV ++ ++ GYKE A +SG GV+ LKFE
Sbjct: 120 TGGDEAALFAGDLFRMYERYAASRGWRFEVASASDGEVGGYKEIIATVSGKGVFAHLKFE 179
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NT
Sbjct: 180 SGVHRVQRVPATEAGGRIHTSAATVAVLPEAEEVDIEIRAEDIRIDTMRASGSGGQHVNT 239
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+TH+PTG+ + +Q E+SQH N+A+A+++L A+LY++ER + RS+ R Q+G
Sbjct: 240 TDSAVRITHLPTGIMV-VQAEKSQHQNRARAMQILRARLYDLERGKADEERSESRKSQVG 298
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SGDRSERIRTYNFPQGR+TDHR+ +T + + +M GE LD IDAL+ + +A G
Sbjct: 299 SGDRSERIRTYNFPQGRLTDHRINLTLYKLERVMMGE-LDEVIDALIADHQSKLLADMG 356
>gi|383649036|ref|ZP_09959442.1| peptide chain release factor 1 [Sphingomonas elodea ATCC 31461]
Length = 357
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 176/365 (48%), Positives = 241/365 (66%), Gaps = 13/365 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ +I R+ AIE R L+ L+ E + + + +KE ++ +R + E
Sbjct: 1 MTRIPADRIAAIEARRDELQALMASGELAGDRFVQVSKEYAEIEPVAVAAGNVRRLRAEG 60
Query: 121 DGLKSLIYECSEDKDMLDMATEEL-----CLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
+ L+ + + D ++ MA EEL LA E K L +LLPKD ADER +L
Sbjct: 61 ESLQQMTQDA--DDELRAMAVEELRANEGTLAEAERK-----LALALLPKDAADERPALL 113
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAG GG+EA+LFA D+ +MY+RY+ + GW+ E++ + S+ GYKE I+G GV+
Sbjct: 114 EIRAGVGGDEAALFAGDLLRMYQRYADRLGWRTELISASTSEAGGYKEVVVGITGTGVFA 173
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E DV++ ++DLRID YR+ G GG
Sbjct: 174 KLKFESGVHRVQRVPATEAGGRIHTSAATVAVLPEAEEADVQIDDKDLRIDIYRASGPGG 233
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
Q NTT+SAVR+TH+PTG+ + QDERSQH NKAKA+KVL +LYE ER R+ R R
Sbjct: 234 QGVNTTDSAVRITHLPTGIVVIQQDERSQHKNKAKAMKVLRTRLYEAERERLAAERVGAR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EGE LD + AL+ Q E D +
Sbjct: 294 RSMVGSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGE-LDELVGALVSQDEADRL 352
Query: 416 ASFGS 420
A S
Sbjct: 353 AQLDS 357
>gi|452963309|gb|EME68385.1| protein chain release factor A [Magnetospirillum sp. SO-1]
Length = 354
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 161/288 (55%), Positives = 213/288 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D+A EE + L+ + LLPKD+ADE++ I+EVRAGTGGEEA+L
Sbjct: 64 EMMNDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGTGGEEAAL 123
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MYERY+ GW+FEV+ V ++ + G KEASA I+G V+ +LKFESG+HRVQR
Sbjct: 124 FAAELFRMYERYASLHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFESGVHRVQR 183
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VAI+P+A+EVD++L + +LR D YRS GSGGQ NTT+SAVRVT
Sbjct: 184 VPATESQGRIHTSAATVAIMPEAEEVDIQLNDSELRFDVYRSQGSGGQSVNTTDSAVRVT 243
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PTG+ ++ Q E+SQH NKA ALK+L A+LYE ERS R+ R Q+GSGDRSERI
Sbjct: 244 HLPTGLAVACQQEKSQHKNKATALKLLRARLYERERSAKDAERAAARKSQVGSGDRSERI 303
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
RTYNFPQGRVTDHR+ +T + I +M G+ LD ++AL+ + + +A
Sbjct: 304 RTYNFPQGRVTDHRINMTLYKIDAVMSGDALDEMVEALVAADQAERLA 351
>gi|341614013|ref|ZP_08700882.1| peptide chain release factor 1 [Citromicrobium sp. JLT1363]
Length = 355
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 245/357 (68%), Gaps = 4/357 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ I R A +E + + E+ +A+++ +L L EL+ ++E+
Sbjct: 1 MTIPPERLDQIANRFAEIEARMASGQLEGEEFVQASRDYAELEPVAKLALELKAAREEVA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
GL+ ++ D +M MA EEL L+ L ++LP+D AD + +LE+RAGT
Sbjct: 61 GLEDML----SDPEMRAMAEEELEALNQRIPELEQQLAVAMLPRDSADAKPAMLEIRAGT 116
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+++MYER++ ++GWK E V ++ S++ G+KE A ++G GV+ KLKFES
Sbjct: 117 GGDEAALFAGDLYRMYERFAGEQGWKVEPVSMSASEVGGFKEIVANVTGTGVFAKLKFES 176
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSA +VA+LP+ DEVDV++ DL+IDTYR+ G+GGQH NTT
Sbjct: 177 GVHRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQIDAGDLKIDTYRASGAGGQHVNTT 236
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SA+R+TH+PTG+ ++ QD RSQH N+ KA++VL A+LYE +R + ++ R +GS
Sbjct: 237 DSAIRITHLPTGLVVTCQDGRSQHKNREKAMQVLRARLYEQQREATEGAEAEARKAMVGS 296
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+G+T H + +++ G L +DAL+ + E +A+
Sbjct: 297 GDRSERIRTYNFPQGRVTDHRIGLTLHKLPEIIAGPGLGELVDALIAEDEAKRLAAM 353
>gi|395787116|ref|ZP_10466717.1| peptide chain release factor 1 [Bartonella birtlesii LL-WM9]
gi|395411540|gb|EJF78061.1| peptide chain release factor 1 [Bartonella birtlesii LL-WM9]
Length = 359
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 177/360 (49%), Positives = 247/360 (68%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + Q P+A Y K E +L+ + I L E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAQNPDAET--YVKLASEYAELQPIIASIRTLNALYAE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+ +I + D +M +A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELEIIINDKLTDAEMRYLAQEELALLCQKMEQLEKELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLNEGEVGGYKEIIAGISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+ +AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRTRALQILRARLFDIERQKAENERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EGE LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEGE-LDEIIHALISDHQTALLMEMD 356
>gi|340779042|ref|ZP_08698985.1| peptide chain release factor 1 [Acetobacter aceti NBRC 14818]
Length = 352
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 247/355 (69%), Gaps = 6/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
++ R+ I RS LE L+ + ++++A++E ++ + I+ LR Q E LK
Sbjct: 3 LDDRLDRIVARSEELEALLASG-VTGEDFTRASREYGEIEPLVARINALRAVQAEEQDLK 61
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
L+ +D +M +A EL D LQ + ++LPKD ADER ILE+R GG+
Sbjct: 62 QLL----DDPEMKALAESELHEVKDRIGMLQQDVRLAMLPKDAADERSAILEIRPAAGGD 117
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA ++F Y RY+ +GWKFEV+ ES+L G +E A ISG GV+ +LK+ESG+H
Sbjct: 118 EAALFASELFGAYRRYADLRGWKFEVMEYDESELGGLREGIATISGKGVFARLKYESGVH 177
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTS ++VA+LP+A+EVDV++ +DLRID YR+ G+GGQH N T SA
Sbjct: 178 RVQRVPATESQGRIHTSTITVAVLPEAEEVDVQIDEKDLRIDVYRASGAGGQHVNKTESA 237
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+TH+PTG+ +++Q+E+SQH N+AKA+K+L ++LYE +R +H SR+ R Q+G+GDR
Sbjct: 238 VRITHLPTGVVVAMQEEKSQHKNRAKAMKILRSRLYEQQRVSLHESRAADRKSQVGTGDR 297
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SERIRTYNFPQGRVTDHR+G+T H I +M GE LD +DAL+ + + + +A+ G
Sbjct: 298 SERIRTYNFPQGRVTDHRIGLTLHKIDRVMLGE-LDEIVDALIQEDQAEQLAAAG 351
>gi|328542097|ref|YP_004302206.1| peptide chain release factor 1 [Polymorphum gilvum SL003B-26A1]
gi|326411847|gb|ADZ68910.1| Peptide chain release factor 1 [Polymorphum gilvum SL003B-26A1]
Length = 357
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 151/256 (58%), Positives = 204/256 (79%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD AD D ILEVRAGTGG+EA+LFA D+F+MY+RY+ KGWK E++ +E ++ G+
Sbjct: 99 LLPKDSADTNDAILEVRAGTGGDEAALFAGDLFRMYQRYADLKGWKVEILSASEGEMGGF 158
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE A++SG V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LPQA++VD+ + +
Sbjct: 159 KEVIASVSGENVFARLKFESGVHRVQRVPETESGGRIHTSAATVAVLPQAEDVDIDVHDS 218
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
DLRIDTYR+ G+GGQH NTT+SAVR+TH+PTG+ +++QDERSQH NKAKA+++L AK+Y+
Sbjct: 219 DLRIDTYRASGAGGQHVNTTDSAVRITHLPTGIVVAVQDERSQHKNKAKAMQLLRAKIYD 278
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
ER + R++ R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T + + ++ GE LD
Sbjct: 279 AEREKAASERTEARRLQVGSGDRSERIRTYNFPQGRVTDHRIGLTLYKLDQVISGEALDE 338
Query: 402 FIDALLLQQEMDAIAS 417
IDAL + + +A+
Sbjct: 339 VIDALTMDHQASLLAA 354
>gi|190893591|ref|YP_001980133.1| peptide chain release factor 1 [Rhizobium etli CIAT 652]
gi|190698870|gb|ACE92955.1| peptide chain release factor 1 protein [Rhizobium etli CIAT 652]
Length = 351
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 243/353 (68%), Gaps = 7/353 (1%)
Query: 69 VLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+L +ERR +E ++ A PA Y K E +L+ + I E+ L +L
Sbjct: 1 MLELERRFDEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKAVAELADLDTL 57
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ + + D++M D+A EL + + L+ + LLPKD ADE+ ILE+RAGTGG EA
Sbjct: 58 LEDKAVDREMRDLAELELPEVKERIEALEQEMQILLLPKDAADEKSAILEIRAGTGGSEA 117
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLKFESG+HRV
Sbjct: 118 ALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGVHRV 177
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR
Sbjct: 178 QRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDSAVR 237
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R Q+GSGDRSE
Sbjct: 238 ITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSGDRSE 296
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RIRTYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+ + +A G
Sbjct: 297 RIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQLAQLG 348
>gi|405382555|ref|ZP_11036336.1| peptide chain release factor 1 [Rhizobium sp. CF142]
gi|397320961|gb|EJJ25388.1| peptide chain release factor 1 [Rhizobium sp. CF142]
Length = 359
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 178/367 (48%), Positives = 253/367 (68%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ +++++R QK
Sbjct: 1 MAKLPIEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQP---VVTKIRAYQK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D+DM ++A EL + + L++ + LLPKD ADE+ IL
Sbjct: 55 AVGELADLEALLEDKSVDRDMRELAELELPDVKERIEALENEIQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYERY+ GWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGNEAALFAGDLFRMYERYASTHGWKVEVLSSSEGEAGGYKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MM GE +D +DALL + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMIGE-IDEVVDALLADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|395782594|ref|ZP_10462980.1| peptide chain release factor 1 [Bartonella rattimassiliensis 15908]
gi|395417331|gb|EJF83670.1| peptide chain release factor 1 [Bartonella rattimassiliensis 15908]
Length = 358
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 173/360 (48%), Positives = 249/360 (69%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L KE
Sbjct: 1 MVSLPQDRMKQLEKRFEIIESQMTTNPNAEI--YVKLASEYAELQPIIASIRALNVLYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ISELETIINDKQTDIEMRNLAQEELPSLYKKVEQLEKELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF+ D+F+MYERY+ WK EV+ ++E ++ GYKE A ISG GV+ KLK+
Sbjct: 119 GTGGSEAALFSGDLFRMYERYAHAHNWKVEVISISEGEVGGYKEIIATISGKGVFSKLKY 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSASTVAVLPEAEEIDIDIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKSQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLDELIHALISDHQTALLMEMD 356
>gi|150397700|ref|YP_001328167.1| peptide chain release factor 1 [Sinorhizobium medicae WSM419]
gi|166223607|sp|A6UCF2.1|RF1_SINMW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|150029215|gb|ABR61332.1| peptide chain release factor 1 [Sinorhizobium medicae WSM419]
Length = 360
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 178/373 (47%), Positives = 258/373 (69%), Gaps = 25/373 (6%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQ---PVVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIGAMLADRATDKDMRDLAELEKPEIEERVEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGDLFRMYERYAAGKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R+ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIDIRSEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
S G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+MER R
Sbjct: 229 SSGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQRADS 287
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +MEGE +D +DALL
Sbjct: 288 ERSADRRNQVGSGDRSERIRTYNFPQGRLTDHRINLTIYKLDRVMEGE-IDEIVDALLAD 346
Query: 410 QEMDAIASFGSTQ 422
+ +A G Q
Sbjct: 347 YQASQLALLGEKQ 359
>gi|403530102|ref|YP_006664631.1| peptide chain release factor 1 [Bartonella quintana RM-11]
gi|403232174|gb|AFR25917.1| peptide chain release factor 1 [Bartonella quintana RM-11]
Length = 359
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 173/361 (47%), Positives = 247/361 (68%), Gaps = 11/361 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P+A Y K E L+ + I L E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAKNPDA--GTYVKLASEYADLQPIVTSIRTLNALSIE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + ++L+ L LLPKD DE+ I+E+RA
Sbjct: 59 ITELETIISDKLTDVEMRNLAQEELPPLFQKMEKLEKELQILLLPKDITDEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF D+F+MYERY+ WK EV+ + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFVGDLFRMYERYANAYNWKVEVISLNEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++E+ + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIEQKKAESERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD I+AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLDELINALISDYQTALLTEMD 356
Query: 414 A 414
Sbjct: 357 G 357
>gi|296282001|ref|ZP_06859999.1| peptide chain release factor 1 [Citromicrobium bathyomarinum JL354]
Length = 355
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 243/357 (68%), Gaps = 4/357 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ I R A +E + + E+ +A+++ +L L EL+ ++E+
Sbjct: 1 MTIPPERLDQIANRFAEIEARMASGQLEGEEFVQASRDYAELEPVAKLALELKAAREEVA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
GL ++ D +M DMA EEL L+ L ++LP+D AD + +LE+RAGT
Sbjct: 61 GLDEMLA----DPEMRDMAEEELEALNQRIPELEQQLAVAMLPRDSADAKPAMLEIRAGT 116
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+++MYER++ ++GWK E V ++ S++ G+KE A ++G GV+ KLKFES
Sbjct: 117 GGDEAALFAGDLYRMYERFAGEQGWKVEPVSMSASEVGGFKEIVAHVTGTGVFAKLKFES 176
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSA +VA+LP+ DEVDV++ DL+IDTYR+ G+GGQH NTT
Sbjct: 177 GVHRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQVDPGDLKIDTYRASGAGGQHVNTT 236
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SA+R+TH+PTG+ ++ QD RSQH N+ +A++VL A+LYE +R + ++ R +GS
Sbjct: 237 DSAIRITHLPTGLVVTCQDGRSQHKNREQAMQVLRARLYEQQRDAAQGAEAEARKAMVGS 296
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+G+T + ++ G L +DAL+ + E +A+
Sbjct: 297 GDRSERIRTYNFPQGRVTDHRIGLTLQKLPQIIAGPGLGELVDALIAEDEAKRLAAM 353
>gi|73667064|ref|YP_303080.1| peptide chain release factor 1 [Ehrlichia canis str. Jake]
gi|119361538|sp|Q3YS23.1|RF1_EHRCJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|72394205|gb|AAZ68482.1| bacterial peptide chain release factor 1 (bRF-1) [Ehrlichia canis
str. Jake]
Length = 359
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 239/341 (70%), Gaps = 1/341 (0%)
Query: 79 LENLVNQP-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L++++ P + S + A+KE +L + +I + + QK+I L+ LI D ++
Sbjct: 17 LKSILEDPSQLSVDSFVAASKEYSELLPVISVIDQYNSLQKDIADLEELINNPETDHELK 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EE + ++++ L SL+PKD D R+ ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 SLAKEEFYERQKQLPKIKNKLKLSLIPKDRDDARNAILEIRAGTGGEEAALFVTDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WKFE + + + + G+KE S ISG V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 TKYAEQKNWKFEQINSSSTGIGGHKEVSLCISGSNVFARLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIP+G+ +
Sbjct: 197 LHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK KALKVL A+LY +E+ + S++R QIGSGDRSERIRTYNFPQ R
Sbjct: 257 QQDEKSQHKNKNKALKVLRARLYNLEKQKRDSEISQMRKSQIGSGDRSERIRTYNFPQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+TDHR+ +T + + D+M+ NLD FIDAL+ + E + + +
Sbjct: 317 ITDHRINLTLYRLEDIMKEGNLDEFIDALIAEDEANKLKNL 357
>gi|451980716|ref|ZP_21929102.1| Peptide chain release factor RF-1 [Nitrospina gracilis 3/211]
gi|451762052|emb|CCQ90341.1| Peptide chain release factor RF-1 [Nitrospina gracilis 3/211]
Length = 357
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/346 (49%), Positives = 243/346 (70%), Gaps = 4/346 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
IE+R L NL++ P+ +PAEY K +E +L D + E + +++ + ++ E
Sbjct: 8 IEKRYEKLNNLMSDPKVYGNPAEYQKCAREHSELSDIVSEYREWKRADRQLQENRKVLDE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S D+++++MA EE+ I ++ ++ L LLPKD DE+ I+E+RAGTGG+EA LF
Sbjct: 68 ES-DRELIEMAREEVESLILRKEEHEAQLKLMLLPKDPRDEKSVIMEIRAGTGGDEAGLF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY++ + WK EV+ + + + GYKE I G G Y +LKFE+G HRVQRV
Sbjct: 127 AADLFRMYSRYAEDRKWKIEVLASSVTGVGGYKEIICNIQGKGAYSRLKFEAGTHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSAV+VAILP+A+EVDV++ DL+ID YRS G GGQ NTT+SAVR+TH
Sbjct: 187 PATETQGRIHTSAVTVAILPEAEEVDVQINPGDLKIDVYRSSGPGGQSVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+P+G+ ++ QDE+SQH NK +ALKVL A+LYE E+ R + ++ R Q+G+GDRSERIR
Sbjct: 247 VPSGIVVTCQDEKSQHKNKERALKVLRARLYEEEQRRQQEAMAQDRKSQVGTGDRSERIR 306
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
TYNFPQ RVTDHR+G+T H ++ +MEG +LD ID L+ + +A+
Sbjct: 307 TYNFPQERVTDHRIGLTLHKLTQIMEG-HLDELIDKLVYHYQTEAL 351
>gi|326386588|ref|ZP_08208210.1| peptide chain release factor 1 [Novosphingobium nitrogenifigens DSM
19370]
gi|326208903|gb|EGD59698.1| peptide chain release factor 1 [Novosphingobium nitrogenifigens DSM
19370]
Length = 356
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 240/359 (66%), Gaps = 3/359 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I + R+ I R A LE + + A+++ +L H ++R + E+
Sbjct: 1 MTIADSRLDQIAARFAELEARLASGTLDAEAFIAASRDYAELEPVAHTARDVRLLRDELA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L +L D DM +A EE+ E + L ++LP+D+AD +LE+RAGT
Sbjct: 61 SLAAL---DEPDADMRALAEEEMARIRAELPEAERRLALAMLPRDNADSHPAMLEIRAGT 117
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MYERY+ ++GWK EV+ SD+ G+KE A ++G GV+ KLK+ES
Sbjct: 118 GGDEAALFAADLFRMYERYAAEQGWKVEVISANASDIGGFKEVIAHVAGQGVFAKLKYES 177
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ DEVDV + ++DL+ID YR+ G+GGQH NTT
Sbjct: 178 GVHRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVSIDDKDLKIDIYRASGAGGQHVNTT 237
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+TH+PTG+ ++ QDERSQH NKAKA++VL +LY++ R + + ++ R +GS
Sbjct: 238 DSAVRITHLPTGIVVTQQDERSQHKNKAKAMQVLRTRLYDLRREQAQGAEAEARRAMVGS 297
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
GDRSERIRTYNFPQGRVTDHR+ +T H + +++ G L IDAL + + +A+ S
Sbjct: 298 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILAGTGLGELIDALTAEDQAKRLAAMDS 356
>gi|452752732|ref|ZP_21952473.1| Peptide chain release factor 1 [alpha proteobacterium JLT2015]
gi|451960123|gb|EMD82538.1| Peptide chain release factor 1 [alpha proteobacterium JLT2015]
Length = 363
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/361 (46%), Positives = 253/361 (70%), Gaps = 9/361 (2%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
+ ++RV AI R + L + + + P ++ + +KE +L +R ++E+ L
Sbjct: 7 VPQERVDAIIGRHSDLTHQMASGDLPPEKFVELSKEYAELDPVASAAKSVRALREEVAEL 66
Query: 124 KSLIYECSEDKDMLDMATEELCLA----IDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
++ + + D DM ++A EL ++ E++L L+L PKD AD+R ILE+RA
Sbjct: 67 TAMAADSASDADMRELAETELAAVQKRLVEGERQLALLML----PKDVADQRSAILEIRA 122
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+++MY+RY++ +GW+ E + ++ +D G KE A +SG GV+ +LKF
Sbjct: 123 GTGGEEAALFAADLYRMYQRYAEGRGWRVETMEMSAADAGGIKEVIANVSGTGVFARLKF 182
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A++VD+ + + DLR+D +R+ G+GGQH N
Sbjct: 183 ESGVHRVQRVPATEASGRIHTSAATVAVLPEAEDVDIEINDSDLRVDVFRASGAGGQHVN 242
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+P+G+ +S QDE+SQH N+AKA+KVL A+L+EMER ++ R+ R +
Sbjct: 243 TTDSAVRITHVPSGLVVSQQDEKSQHKNRAKAMKVLRARLFEMEREKLASERAGARKSMV 302
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GSGDRSERIRTYNFPQGRVTDHR+ +T H + ++EGE +D I AL+ + E + +A G
Sbjct: 303 GSGDRSERIRTYNFPQGRVTDHRINLTLHRLPSIIEGE-MDELIGALIAEDEAERLAGLG 361
Query: 420 S 420
+
Sbjct: 362 A 362
>gi|399037191|ref|ZP_10734070.1| peptide chain release factor 1 [Rhizobium sp. CF122]
gi|398065183|gb|EJL56834.1| peptide chain release factor 1 [Rhizobium sp. CF122]
Length = 359
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/367 (47%), Positives = 252/367 (68%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQP---VVTKIRVYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL + + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLNDKSVDREMRDLAELELPEVKERLEALEQEIQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYERY+ GWK EV+ +E + G+KE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERYAAAHGWKVEVLSSSEGEAGGFKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MM GE +D +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMVGE-IDEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>gi|56552405|ref|YP_163244.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|260753918|ref|YP_003226811.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|384412513|ref|YP_005621878.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|81598182|sp|Q5NMC7.1|RF1_ZYMMO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56543979|gb|AAV90133.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|258553281|gb|ACV76227.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|335932887|gb|AEH63427.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 358
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/287 (55%), Positives = 211/287 (73%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D ++ MA EEL + L SLLP+D ADER ILE+RAGTGG+EA+LF
Sbjct: 70 DDPELQAMAVEELEANKTALAEAERALALSLLPRDAADERSAILEIRAGTGGDEAALFGG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+ +MY RY+++ GW+ E++ + ++L GYKE +I+G GV+ +LKFESG+HRVQRVP+
Sbjct: 130 DLLRMYSRYAEEHGWRVEMISASAAELGGYKEVVISITGAGVFARLKFESGVHRVQRVPV 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA +VA+LP+A+EVDV + DLRID +RS G GGQ NTT+SAVR+THIP
Sbjct: 190 TESGGRIHTSAATVAVLPEAEEVDVDIDERDLRIDIFRSSGPGGQSVNTTDSAVRITHIP 249
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
+G+ +S QDE+SQH NKAKA+KVL A+LYE ER R+H R+ R +GSGDRSERIRTY
Sbjct: 250 SGIVVSQQDEKSQHKNKAKAMKVLRARLYERERERLHSERAGQRKSMVGSGDRSERIRTY 309
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
NFPQGRVTDHR+ +T H + +++ G LD I AL+ + E + +AS
Sbjct: 310 NFPQGRVTDHRINLTLHRLPEILAGPGLDEVISALIAEDEAERLASL 356
>gi|334139999|ref|YP_004533199.1| peptide chain release factor RF-1 [Novosphingobium sp. PP1Y]
gi|333938023|emb|CCA91381.1| peptide chain release factor RF-1 [Novosphingobium sp. PP1Y]
Length = 356
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/357 (45%), Positives = 242/357 (67%), Gaps = 3/357 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ + ++R+ I R A LE + + A+++ +L + +E+ + ++E+
Sbjct: 1 MSVSDERLAQIAHRFAELEARLASGTLEGEAFVAASRDYAELEPVARVSAEVVSMREELA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ L D +M +A EE+ E + L ++LP+D AD R +LE+RAGT
Sbjct: 61 SLQKL---DDPDPEMRALADEEIARIKSELPEAERKLAIAMLPRDAADSRPAMLEIRAGT 117
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+++MYER++ ++GWK E++ SD+ G+KE A +SG GV+ KLKFES
Sbjct: 118 GGDEAALFAADLYRMYERFAAEQGWKVEMISANSSDIGGFKEVVANVSGTGVFAKLKFES 177
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ EVDV++ ++DL+ID YR+ G+GGQH NTT
Sbjct: 178 GVHRVQRVPVTESGGRIHTSAATVAVLPEPSEVDVQIEDKDLKIDIYRASGAGGQHVNTT 237
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+TH+P+G+ + QDERSQH NKAKA++VL A+LYE R + ++ R +GS
Sbjct: 238 DSAVRITHLPSGLVVICQDERSQHKNKAKAMQVLRARLYEKMRDEAQGAEAEARKAMVGS 297
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L +DAL+ + E +A+
Sbjct: 298 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLGELVDALIAEDEAKRLAAM 354
>gi|163793919|ref|ZP_02187893.1| Protein chain release factor A [alpha proteobacterium BAL199]
gi|159181030|gb|EDP65547.1| Protein chain release factor A [alpha proteobacterium BAL199]
Length = 356
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/351 (50%), Positives = 250/351 (71%), Gaps = 8/351 (2%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
R L +E R A + V +++ + +KEL +L + + LR + E+ ++L
Sbjct: 13 RALELEARLASPDGFVQ------SDFQRLSKELAELTPVVETVGLLRRTRAELADAQALA 66
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
E D +M ++A EE + L+ ++ LLP+D+AD R+ ILEVRAGTGG+EA+
Sbjct: 67 EES--DGEMRELAEEEAAAIEAKLPDLERAMMLHLLPRDEADARNAILEVRAGTGGDEAA 124
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA D+F MY+RY+Q +GW+FEV+ V+E+++ GYKEA A ISG V+ LKFESG+HRVQ
Sbjct: 125 LFAADLFAMYQRYAQGRGWRFEVMEVSENEIGGYKEAIATISGQSVFAHLKFESGVHRVQ 184
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTSA +VA+LP+A+EVDV + ++DLRID YRS G+GGQH NTT+SAVR+
Sbjct: 185 RVPATESQGRIHTSAATVAVLPEAEEVDVAIDDKDLRIDVYRSSGAGGQHVNTTDSAVRI 244
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ ++ QDE+SQH N+AKA+K+L A+L++ ER+R R+ R QIGSGDRSER
Sbjct: 245 THLPTGVVVTQQDEKSQHKNRAKAMKILRARLFDQERTRRDSERAADRKSQIGSGDRSER 304
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
IRTYNFPQGRVTDHR+ +T + I +M GE LD +DAL+ + E + +A+
Sbjct: 305 IRTYNFPQGRVTDHRINLTLYKIDKVMSGEALDEIVDALIAEDEAERLATL 355
>gi|397677429|ref|YP_006518967.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|395398118|gb|AFN57445.1| Peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 358
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/287 (55%), Positives = 211/287 (73%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D ++ MA EEL + L SLLP+D ADER ILE+RAGTGG+EA+LF
Sbjct: 70 DDPELQAMAVEELEANKTALAEAERALALSLLPRDAADERSAILEIRAGTGGDEAALFGG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+ +MY RY+++ GW+ E++ + ++L GYKE +I+G GV+ +LKFESG+HRVQRVP+
Sbjct: 130 DLLRMYSRYAEEHGWRVEMISASAAELGGYKEVVISITGAGVFARLKFESGVHRVQRVPV 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA +VA+LP+A+EVDV + DLRID +RS G GGQ NTT+SAVR+THIP
Sbjct: 190 TESGGRIHTSAATVAVLPEAEEVDVDIDERDLRIDIFRSSGPGGQSVNTTDSAVRITHIP 249
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
+G+ +S QDE+SQH NKAKA+KVL A+LYE ER R+H R+ R +GSGDRSERIRTY
Sbjct: 250 SGIVVSQQDEKSQHKNKAKAMKVLRARLYERERERLHSERAGQRKSMVGSGDRSERIRTY 309
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
NFPQGRVTDHR+ +T H + +++ G LD I AL+ + E + +AS
Sbjct: 310 NFPQGRVTDHRINLTLHRLPEILAGPGLDEVISALIAEDEAERLASL 356
>gi|359398832|ref|ZP_09191847.1| peptide chain release factor RF-1 [Novosphingobium
pentaromativorans US6-1]
gi|357599775|gb|EHJ61479.1| peptide chain release factor RF-1 [Novosphingobium
pentaromativorans US6-1]
Length = 356
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/357 (45%), Positives = 242/357 (67%), Gaps = 3/357 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ + ++R+ I R A LE + + A+++ +L + +E+ + ++E+
Sbjct: 1 MSVSDERLAQIAHRFAELEARLASGTLEGEAFVAASRDYAELEPVARVSAEVVSMREELA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ L D +M +A EE+ E + L ++LP+D AD R +LE+RAGT
Sbjct: 61 SLQKL---DDPDPEMRALADEEIARIKSELPEAERKLAIAMLPRDAADSRPAMLEIRAGT 117
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+++MYER++ ++GWK E++ SD+ G+KE A +SG GV+ KLKFES
Sbjct: 118 GGDEAALFAADLYRMYERFAAEQGWKVEMISANASDIGGFKEVVANVSGTGVFAKLKFES 177
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ EVDV++ ++DL+ID YR+ G+GGQH NTT
Sbjct: 178 GVHRVQRVPVTESGGRIHTSAATVAVLPEPSEVDVQIEDKDLKIDIYRASGAGGQHVNTT 237
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+TH+P+G+ + QDERSQH NKAKA++VL A+LYE R + ++ R +GS
Sbjct: 238 DSAVRITHLPSGLVVICQDERSQHKNKAKAMQVLRARLYEKMRDEAQGAEAEARKAMVGS 297
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L +DAL+ + E +A+
Sbjct: 298 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLGELVDALIAEDEAKRLAAM 354
>gi|406707942|ref|YP_006758294.1| peptide chain release factor 1 (bRF-1) [alpha proteobacterium
HIMB59]
gi|406653718|gb|AFS49117.1| bacterial peptide chain release factor 1 (bRF-1) [alpha
proteobacterium HIMB59]
Length = 359
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/325 (50%), Positives = 230/325 (70%), Gaps = 1/325 (0%)
Query: 82 LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141
L+N + + NK+L KL + L +++ + EI+G K I E D+++ +A
Sbjct: 21 LMNSENLDNKQIIQINKDLSKLEPIISLSDDIKKLENEIEGYKE-ILENENDEELRSLAK 79
Query: 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYS 201
+EL + + ++ LL +LLPKD+AD+++ ILE+RAGTGG+EA+LFA D+F+MYERYS
Sbjct: 80 QELPIYEKDLEQKNRELLIALLPKDEADDKNVILEIRAGTGGDEAALFAGDLFRMYERYS 139
Query: 202 QKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTS 261
K W F+ + E+ L+G KEA I G GV+ LK ESG+HRVQR+P TE GR+HTS
Sbjct: 140 AMKNWNFQPMEKNETGLKGVKEAIIEIKGDGVFKFLKNESGVHRVQRIPETESGGRIHTS 199
Query: 262 AVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDE 321
A +VA+LP+A+EVDV ++ DLRID YRSGG+GGQ NTT+SAVR+TH+PTG+ ++ QDE
Sbjct: 200 AATVAVLPEAEEVDVDIKESDLRIDVYRSGGAGGQSVNTTDSAVRITHLPTGIVVTQQDE 259
Query: 322 RSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDH 381
RSQH NKAKALK+L +++Y++ER + S R Q+GSGDRSERIRTYNFPQGRV+DH
Sbjct: 260 RSQHKNKAKALKILRSRIYDVERQKKQQEESSNRKSQVGSGDRSERIRTYNFPQGRVSDH 319
Query: 382 RVGITHHAISDMMEGENLDIFIDAL 406
R+ +T + + + GE L+ I AL
Sbjct: 320 RINLTLYKLDQFLTGEALEEMISAL 344
>gi|409439217|ref|ZP_11266276.1| peptide chain release factor RF-1 [Rhizobium mesoamericanum
STM3625]
gi|408749122|emb|CCM77455.1| peptide chain release factor RF-1 [Rhizobium mesoamericanum
STM3625]
Length = 359
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/371 (48%), Positives = 251/371 (67%), Gaps = 21/371 (5%)
Query: 61 LIKIMEQRVLAIERRSACLE-NLVNQPEAS-----PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E + + P A +EYS+ + K+R I+EL
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSDGPSADVYVKLASEYSELQPVVTKIRAYEKAIAELA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADER 171
L+ L+ + S D++M D+A EL D ++RL++L + LLPKD ADE+
Sbjct: 61 D-------LEVLLNDKSVDREMRDLADLELP---DVKERLEALEQEIQILLLPKDAADEK 110
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
ILE+RAGTGG EA+LFA D+F+MYERY+ GWK EV+ ++ + G+KE A I+G
Sbjct: 111 SAILEIRAGTGGSEAALFAGDLFRMYERYAAAHGWKVEVLSSSDGEAGGFKEIIATITGK 170
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSG 291
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS
Sbjct: 171 GVFAKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSS 230
Query: 292 GSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSR 351
G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+ ER R R
Sbjct: 231 GAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRAESER 289
Query: 352 SKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
S R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MM GE +D +DAL+ +
Sbjct: 290 SADRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMVGE-IDEVVDALMADYQ 348
Query: 412 MDAIASFGSTQ 422
+A G Q
Sbjct: 349 ASQLAQLGEQQ 359
>gi|49473852|ref|YP_031894.1| peptide chain release factor 1 [Bartonella quintana str. Toulouse]
gi|61214617|sp|Q6G0R0.1|RF1_BARQU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|49239355|emb|CAF25688.1| Peptide chain release factor 1 [Bartonella quintana str. Toulouse]
Length = 359
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 172/361 (47%), Positives = 247/361 (68%), Gaps = 11/361 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P++ Y K E L+ + I L E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAKNPDS--GTYVKLASEYADLQPIVTSIRTLNALSIE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + ++L+ L LLPKD DE+ I+E+RA
Sbjct: 59 ITELETIISDKLTDVEMRNLAQEELPPLFQKMEKLEKELQILLLPKDITDEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF D+F+MYERY+ WK EV+ + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFVGDLFRMYERYANAYNWKVEVISLNEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++E+ + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIEQKKAESERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD I+AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLDELINALISDYQTALLTEMD 356
Query: 414 A 414
Sbjct: 357 G 357
>gi|389695992|ref|ZP_10183634.1| peptide chain release factor 1 [Microvirga sp. WSM3557]
gi|388584798|gb|EIM25093.1| peptide chain release factor 1 [Microvirga sp. WSM3557]
Length = 362
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/321 (51%), Positives = 227/321 (70%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
P + ++EL +L + I R + ++GL++LI + S D +M +A +EL A +
Sbjct: 30 PETFVALSRELAELDGVVSAIRAYRAMEDNLNGLQALIDDASTDAEMRSLAEDELPQARE 89
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
+ +R L LLPKD+ADE+ ILE+RAGTGG+EA+LFA D+ +MY RY+ KGWK E
Sbjct: 90 DLERAAQDLRIMLLPKDEADEKSAILEIRAGTGGDEAALFAGDLLRMYTRYADLKGWKVE 149
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
+V +E GYKE A I G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP
Sbjct: 150 IVSESEGTAGGYKEVVAEIKGRGVFARLKFESGVHRVQRVPDTETQGRIHTSAATVAVLP 209
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
+A++VDV L + DL+IDT R+ G+GGQH N T SA+R+THIPTG + +QDERSQH N+A
Sbjct: 210 EAEDVDVVLNDADLKIDTMRAQGAGGQHVNKTESAIRITHIPTGTVVFVQDERSQHKNRA 269
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
+A+ +L A+LY+ ER+ +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T +
Sbjct: 270 RAMALLRARLYDAERTAKDAARAADRKAQVGSGDRSERIRTYNFPQGRVTDHRINLTLYK 329
Query: 390 ISDMMEGENLDIFIDALLLQQ 410
+ +++ G LD IDAL+ +
Sbjct: 330 LEEVISGNALDELIDALITEH 350
>gi|299132853|ref|ZP_07026048.1| peptide chain release factor 1 [Afipia sp. 1NLS2]
gi|298592990|gb|EFI53190.1| peptide chain release factor 1 [Afipia sp. 1NLS2]
Length = 358
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 163/338 (48%), Positives = 233/338 (68%), Gaps = 3/338 (0%)
Query: 75 RSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LE L+ Q S Y +A +EL ++ + + R EI L+++I + + D
Sbjct: 13 RHAALEAELMAQ--VSAETYVRATRELAEISPVVEAVKAYRAGASEIADLEAMIADPATD 70
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
DM MA E + ++ ++ L+ + +LLPKD DER+ +LE+RAGTGG+EASLFA D+
Sbjct: 71 ADMRAMAESERPVLLERQESLEQQIRVALLPKDAMDERNVVLEIRAGTGGDEASLFAGDL 130
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK EV+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE
Sbjct: 131 FRMYERFAALQGWKVEVMSASEGTMGGYKEIVAEVQGRGAFAKLKFESGVHRVQRVPDTE 190
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A++VD+ +++ DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 191 ASGRIHTSAATVAVLPEAEDVDIDIKDSDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 250
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ + +QD RSQH N+A A+ +L +++ + ER R RS R Q+GSGDRSERIRTYNF
Sbjct: 251 IVVMMQDSRSQHKNRASAMNILRSRVLDGERQRAAAERSADRRGQVGSGDRSERIRTYNF 310
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
PQGRVTDHR+ +T + + ++ GE L +DAL + +
Sbjct: 311 PQGRVTDHRINLTLYKLPQVIAGEALGELVDALTTEHQ 348
>gi|85375680|ref|YP_459742.1| peptide chain release factor 1 [Erythrobacter litoralis HTCC2594]
gi|122543160|sp|Q2N5U6.1|RF1_ERYLH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|84788763|gb|ABC64945.1| protein chain release factor A [Erythrobacter litoralis HTCC2594]
Length = 355
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 167/360 (46%), Positives = 246/360 (68%), Gaps = 10/360 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I R+ I R A LE + E+ +A+++ +L + +E++ ++EI
Sbjct: 1 MTIPATRLDQIANRFAELEARMASGTLEGEEFVQASRDYAELEPVAKVAAEVKAMREEIG 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCL---AIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
GL+ ++ D +M MA EEL A+ E++R ++ ++LPKD AD + +LE+R
Sbjct: 61 GLEEMLA----DPEMKAMAQEELAAIREALPEKERQLAI---AMLPKDSADNKPAMLEIR 113
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LFA D+++MYER++ ++GWK E V + S++ G+KE A +SG GV+ KLK
Sbjct: 114 AGTGGDEAALFAGDLYRMYERFAGEQGWKVEPVSMNASEVGGFKEIVANVSGTGVFAKLK 173
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+ DEVDV++ ++DL+ID YR+ G+GGQH
Sbjct: 174 FESGVHRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQIDDKDLKIDIYRASGAGGQHV 233
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PTG+ + QDERSQH NKAKA++VL +LY+ R + + R
Sbjct: 234 NTTDSAVRITHLPTGIVVQQQDERSQHKNKAKAMQVLRTRLYDHLREQSQGEEAAARKAM 293
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGRVTDHR+G+T H + +++ G L + AL+ + E +A+
Sbjct: 294 VGSGDRSERIRTYNFPQGRVTDHRIGLTLHKLDEIIAGPGLGELVGALIAEDEAKRLAAL 353
>gi|395789248|ref|ZP_10468771.1| peptide chain release factor 1 [Bartonella taylorii 8TBB]
gi|395430295|gb|EJF96339.1| peptide chain release factor 1 [Bartonella taylorii 8TBB]
Length = 359
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 175/360 (48%), Positives = 248/360 (68%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAET--YVKLASEYAELQPIVTFIRTLNALHTE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETMISDKLTDIEMRNLAQEELPLLYQKTEQLEQELQILLLPKDVADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLNEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGR+TDHR+ +T + + ++EG +LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRITDHRINLTLYKLDRVLEG-DLDELIHALISDHQTALLMEMD 356
>gi|410943223|ref|ZP_11374964.1| peptide chain release factor 1 [Gluconobacter frateurii NBRC
101659]
Length = 353
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 246/353 (69%), Gaps = 8/353 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A RS ++ L++ E E+++ ++E +L + I + +K+ +G ++L
Sbjct: 8 ERIVA---RSEEIQALMSSGEMGGEEFTRLSREYAELEPVVASIQAWQAAEKQREGAQAL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ + E K++ + EE+ I E L+ L +LLPKD ADER ILE+R GG+EA
Sbjct: 65 LAD-PEMKELAQVELEEIEARIPE---LEHNLRIALLPKDAADERSAILEIRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA +F Y R+S++ GW+FEV+ ES++ G KE A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAQLFDAYRRFSEQNGWRFEVMEYAESEVAGLKEGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+THIPTG+ +++Q+E+SQH N+AKA+K+L A+LYE +RS H SR+ R Q+G+GDRSE
Sbjct: 241 ITHIPTGVVVAMQEEKSQHKNRAKAMKILRARLYERQRSAAHESRAADRKSQVGTGDRSE 300
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RIRTYNFPQGRVTDHR+ +T + I +M GE D IDAL +++ + +A+ G
Sbjct: 301 RIRTYNFPQGRVTDHRINLTLYKIERIMAGE-FDEIIDALTREEQTELLAAEG 352
>gi|374572180|ref|ZP_09645276.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM471]
gi|374420501|gb|EHR00034.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM471]
Length = 361
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 160/317 (50%), Positives = 225/317 (70%), Gaps = 6/317 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL +L + + R+ KE+ ++LI + + D +M MA +EL I+
Sbjct: 32 YVQITRELAELTPLIEAVKTYRSAVKELADTEALIADTATDAEMRAMAEAERDELTPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 E---LVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA++P
Sbjct: 149 VISASEGSVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVMP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
+ +EVDV +RN+DLRI+T R+GG+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A
Sbjct: 209 EVEEVDVEIRNDDLRIETMRAGGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRA 268
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
A+ +L +++Y+ E+ R+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T +
Sbjct: 269 SAMNILRSRIYDAEQQRLDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYK 328
Query: 390 ISDMMEGENLDIFIDAL 406
+ +M GE L DAL
Sbjct: 329 LPQVMAGEALGELTDAL 345
>gi|395778749|ref|ZP_10459261.1| peptide chain release factor 1 [Bartonella elizabethae Re6043vi]
gi|423714937|ref|ZP_17689161.1| peptide chain release factor 1 [Bartonella elizabethae F9251]
gi|395417957|gb|EJF84294.1| peptide chain release factor 1 [Bartonella elizabethae Re6043vi]
gi|395430421|gb|EJF96463.1| peptide chain release factor 1 [Bartonella elizabethae F9251]
Length = 358
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 172/360 (47%), Positives = 247/360 (68%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRIKQLEKRFEIIESQMTANPNAET--YVKLASEYAELQPVIASIRALNALYAE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL + + L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IRELETIINDKQTDIEMRHLAQEELPSLYKKVEHLEKELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF+ D+F+MYERY+ WK EV+ ++E ++ GYKE A ISG GV+ KLK+
Sbjct: 119 GTGGSEAALFSGDLFRMYERYAHAHHWKVEVISLSEGEVGGYKEIIATISGKGVFSKLKY 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDINIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER ++ RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKVESERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLDELIHALISDHQTTLLMEMD 356
>gi|402771362|ref|YP_006590899.1| peptide chain release factor 1 (RF-1) [Methylocystis sp. SC2]
gi|401773382|emb|CCJ06248.1| Peptide chain release factor 1 (RF-1) [Methylocystis sp. SC2]
Length = 356
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 164/297 (55%), Positives = 219/297 (73%), Gaps = 1/297 (0%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
I R QKE D L +++ + S D +M +A E A + +S L +LLPKD+AD
Sbjct: 47 IRAYRAAQKESDDLSAMLADASLDAEMRRLAESETEAAHERLAAAESALKLALLPKDEAD 106
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILEVRAGTGG+EA+LFA D+F+ Y++Y+ KGW+ E+V +E L G+KE A I
Sbjct: 107 EKGVILEVRAGTGGDEAALFAGDLFRAYQKYAALKGWRVEIVSGSEGALGGFKEIVAEII 166
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GVYG+LKFESG+HRVQRVP TE GR+HTSA +VA+LPQA++VDV + +DL+IDT R
Sbjct: 167 GRGVYGRLKFESGVHRVQRVPETETQGRIHTSAATVAVLPQAEDVDVDIDEKDLQIDTMR 226
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
+ G+GGQH N T SA+R+THIP+G+ + +Q+ERSQH N+AKA+ VL ++LY+ ER R+
Sbjct: 227 AQGAGGQHVNKTESAIRITHIPSGIVVMMQEERSQHRNRAKAMNVLRSRLYDAERQRLDK 286
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
RS+ R +Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEGE D IDAL
Sbjct: 287 ERSEDRKQQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGE-FDEIIDAL 342
>gi|319899228|ref|YP_004159321.1| peptide chain release factor 1 [Bartonella clarridgeiae 73]
gi|319403192|emb|CBI76751.1| peptide chain release factor 1 [Bartonella clarridgeiae 73]
Length = 357
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 248/351 (70%), Gaps = 10/351 (2%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
L D +K +E+R IE + A EN P A Y K E +L+ + LI L +
Sbjct: 4 LPKDRMKQLEKRFETIESQMA--EN----PNAET--YVKLASEYAELQPIIVLIRALNSL 55
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
KEI L+++I + D +M ++A EEL + ++L+ L LLPKD ADE+ I+E
Sbjct: 56 CKEIAELETIISDTQTDTEMRNLAQEELSSLYQKVQQLEQELQILLLPKDIADEKSVIIE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA ++F+MYERY+ WK EV+ +++ ++ GYKE A ISG GV+ K
Sbjct: 116 IRAGTGGSEAALFAGNLFRMYERYANTHNWKVEVISLSDGEVGGYKEIIATISGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRK 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +L+ I+AL+
Sbjct: 295 TQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEG-DLNELINALI 344
>gi|57239178|ref|YP_180314.1| peptide chain release factor 1 [Ehrlichia ruminantium str.
Welgevonden]
gi|58579136|ref|YP_197348.1| peptide chain release factor 1 [Ehrlichia ruminantium str.
Welgevonden]
gi|58617189|ref|YP_196388.1| peptide chain release factor 1 [Ehrlichia ruminantium str. Gardel]
gi|75432752|sp|Q5FGZ2.1|RF1_EHRRG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|81557311|sp|Q5HB80.1|RF1_EHRRW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|57161257|emb|CAH58178.1| peptide release factor 1 [Ehrlichia ruminantium str. Welgevonden]
gi|58416801|emb|CAI27914.1| Peptide chain release factor 1 (RF-1) [Ehrlichia ruminantium str.
Gardel]
gi|58417762|emb|CAI26966.1| Peptide chain release factor 1 (RF-1) [Ehrlichia ruminantium str.
Welgevonden]
Length = 359
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 166/342 (48%), Positives = 237/342 (69%), Gaps = 1/342 (0%)
Query: 79 LENLVNQP-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L++L+ P + S + A+KE +L + +I E QK+I L+ LI D ++
Sbjct: 17 LKHLLEDPSQLSVESFVNASKEYSELLPIISVIDEYNAVQKDIKDLQELINNQETDTELK 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
++A EE + +++ L SLLPKD D R+ ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 NLAKEEFYELQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGTGGEEAALFVTDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y++KK WK E + + + + G+KE S +SG V+ KLKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAEKKNWKIEQINSSSTGIGGHKEVSLCVSGSNVFAKLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIP+G+ +
Sbjct: 197 LHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK KALKVL A+LY++E+ + S+LR QIGSGDRSERIRTYNFPQ R
Sbjct: 257 QQDEKSQHKNKNKALKVLRARLYDLEKQKRDAEISQLRKSQIGSGDRSERIRTYNFPQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+TDHR+ +T + + D+M+ +LD I+AL+ + E + + +
Sbjct: 317 ITDHRINLTLYRLEDIMKEGDLDELIEALIAEDEANKLKNLN 358
>gi|319404588|emb|CBI78194.1| peptide chain release factor 1 [Bartonella rochalimae ATCC
BAA-1498]
Length = 359
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 172/360 (47%), Positives = 250/360 (69%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L + KE
Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAET--YVKLASEYAELQPIIAPIRTLNSLHKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + + L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IAELETIISDTQTDTEMRNLAQEELSSLSQKIQELEQELQILLLPKDIADEKSVIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA ++F+MYERY+ WK E++ +++ ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGNLFRMYERYANTHNWKVEIISLSDGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKTQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +L+ I+AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEG-DLNELINALISDHQTTLLTEMD 356
>gi|307942489|ref|ZP_07657838.1| peptide chain release factor 1 [Roseibium sp. TrichSKD4]
gi|307774310|gb|EFO33522.1| peptide chain release factor 1 [Roseibium sp. TrichSKD4]
Length = 359
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 237/329 (72%), Gaps = 2/329 (0%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC-LAI 148
P+ Y K ++E L +H I L ++E+ ++++ + D +M ++A E LA
Sbjct: 27 PSTYVKLSREYSGLEPLVHKIRTLIKAEEELAEAEAMLDDADTDPEMRELAEAERDELAA 86
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
E Q + + LLPKD AD D ILEVRAGTGG+EA+LFA D+F+MY+R+++ GWK
Sbjct: 87 SLETLTQDVRI-GLLPKDSADANDAILEVRAGTGGDEAALFAGDLFRMYQRFAELNGWKV 145
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +E ++ G+KE A++SG V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+L
Sbjct: 146 EVLSASEGEVGGFKEVIASVSGENVFARLKFESGVHRVQRVPATESGGRIHTSAATVAVL 205
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
PQA++VD+ + DLRIDT+R+ G+GGQH NTT+SAVR+TH PTG+ +++QDERSQH NK
Sbjct: 206 PQAEDVDIEINESDLRIDTFRASGAGGQHVNTTDSAVRITHEPTGIVVAVQDERSQHKNK 265
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
A+A+++L A++Y+ ER+R R++ R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T +
Sbjct: 266 ARAMQLLRARIYDEERARAASERTEARRVQVGSGDRSERIRTYNFPQGRVTDHRIGLTLY 325
Query: 389 AISDMMEGENLDIFIDALLLQQEMDAIAS 417
+ ++ GE L ++AL+L + +A+
Sbjct: 326 KLEQIIAGEGLAEVVEALILDYQATLLAA 354
>gi|163867491|ref|YP_001608690.1| peptide chain release factor 1 [Bartonella tribocorum CIP 105476]
gi|189039959|sp|A9IMM3.1|RF1_BART1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|161017137|emb|CAK00695.1| peptide chain release factor 1 [Bartonella tribocorum CIP 105476]
Length = 358
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 172/360 (47%), Positives = 248/360 (68%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRIKQLEKRFEIIESQMTTNPNAET--YVKLASEYAELQPVIASIRALNALYGE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETIINDKQTDIEMRHLAQEELPSLHKKVEQLEKELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF+ D+F+MYERY+ WK EV+ ++E ++ GYKE A ISG GV+ KLK+
Sbjct: 119 GTGGSEAALFSGDLFRMYERYAHAHHWKVEVISLSEGEVGGYKEIIATISGKGVFSKLKY 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIDIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER ++ RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKVESERSASRKSQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLDEIIHALISDHQTALLMEMD 356
>gi|156389000|ref|XP_001634780.1| predicted protein [Nematostella vectensis]
gi|156221867|gb|EDO42717.1| predicted protein [Nematostella vectensis]
Length = 273
Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 155/259 (59%), Positives = 205/259 (79%), Gaps = 1/259 (0%)
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
++K+L+PKD+ADE D ILEVRAGTGG+EASLFA ++F MY+R++ K WKF+++ + SD
Sbjct: 1 IMKALIPKDEADENDAILEVRAGTGGQEASLFASEMFIMYQRFAAFKKWKFDILDIARSD 60
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
GYKEASA+ISG GV+GK+KFE G+HRVQRVP+TE GRVHTS ++VA+LPQ EVDV
Sbjct: 61 TGGYKEASASISGYGVFGKMKFEVGVHRVQRVPVTEAQGRVHTSTMTVAVLPQPQEVDVI 120
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCA 337
+ DL+IDT+R+ G+GGQH NTT+SAVR+THIP+GM +S Q+ERSQ NKAKA++VL A
Sbjct: 121 ISPNDLKIDTFRASGAGGQHVNTTDSAVRITHIPSGMVVSSQEERSQFKNKAKAMQVLRA 180
Query: 338 KLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGE 397
+LY+++R +R R QIG+ +RSE+IRTYNFPQGRVTDHR+G+T H + +EG
Sbjct: 181 RLYDLQRQEADSARVHARRTQIGTAERSEKIRTYNFPQGRVTDHRIGMTSHTVDKFLEGG 240
Query: 398 N-LDIFIDALLLQQEMDAI 415
L+ IDAL +Q E DA+
Sbjct: 241 VLLEDMIDALRVQDERDAL 259
>gi|209883257|ref|YP_002287114.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5]
gi|337739650|ref|YP_004631378.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5]
gi|386028668|ref|YP_005949443.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM4]
gi|229470351|sp|B6JA06.1|RF1_OLICO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|209871453|gb|ACI91249.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5]
gi|336093736|gb|AEI01562.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM4]
gi|336097314|gb|AEI05137.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5]
Length = 358
Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 164/344 (47%), Positives = 235/344 (68%), Gaps = 3/344 (0%)
Query: 75 RSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LE L+ Q A Y +A +EL +L + + R E+ L ++I + + D
Sbjct: 13 RHAALEAELLGQLNAEA--YVRATRELAELTPVVDAVKAYRAGASELSDLDAMIDDPTTD 70
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+M MA E + + ++ L+ + +LLPKD DER+ +LEVRAGTGG+EASLFA D+
Sbjct: 71 AEMRAMAESERPVLQERQENLEQQIRIALLPKDAMDERNVVLEVRAGTGGDEASLFAGDL 130
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK EV+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE
Sbjct: 131 FRMYERFAALQGWKVEVISASEGTVGGYKEIVAQVQGRGAFAKLKFESGVHRVQRVPDTE 190
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A+E+D+ +++ DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 191 ASGRIHTSAATVAVLPEAEEIDIDIKDTDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 250
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ + +QD RSQH N+A A+ +L +++ + ER R RS R Q+GSGDRSER+RTYNF
Sbjct: 251 IVVMMQDSRSQHKNRASAMNILRSRILDAERQRAASERSADRRGQVGSGDRSERVRTYNF 310
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
PQGRVTDHR+ +T + + ++ GE L+ IDAL + + +A+
Sbjct: 311 PQGRVTDHRINLTLYKLPQVIAGEALNELIDALTTEHQAALLAT 354
>gi|254796771|ref|YP_003081607.1| peptide chain release factor 1 [Neorickettsia risticii str.
Illinois]
gi|254590013|gb|ACT69375.1| peptide chain release factor 1 [Neorickettsia risticii str.
Illinois]
Length = 367
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 164/359 (45%), Positives = 253/359 (70%), Gaps = 5/359 (1%)
Query: 59 NDLIKIMEQRVLAIERRSACLENLVNQPEASPA-EYSKANKELRKLRDSMHLISELRTKQ 117
++L ++E+ I R L + + PE P+ E+SK +KE +L+ + LI+ + +
Sbjct: 2 DNLCGVLEE----ILNRHTYLADRLRCPETIPSQEFSKLSKEYAELKPKVELITRYKKLK 57
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
+E L+ L+ ED+++ ++ +L D +L+ + + LLPKD D + +LEV
Sbjct: 58 EEQAYLELLVKNPLEDQEIREIGKSDLQAIQDVVPKLEFEIRRMLLPKDKDDALNVMLEV 117
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA+LFA +F MY++Y+++ W+FE++ ++ +++ GYKEA+A+ISG V+ KL
Sbjct: 118 RAGTGGDEAALFAASLFHMYQKYAERMKWRFEIISISHNEIGGYKEANASISGSEVFAKL 177
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE +GR+HTS +VA+LP+ ++VDV++ ++DLRID YRS G GGQ
Sbjct: 178 KFESGVHRVQRVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQS 237
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVRVTHIPTG+ + QDE+SQH N+AKA+KVL +LYE+ER+++ S +R
Sbjct: 238 VNTTDSAVRVTHIPTGIVVIQQDEKSQHKNRAKAMKVLKVRLYEIERNKVQQEISSMRKS 297
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
QIGSG+RSE+ RTYNFPQGR+TDHR+ +T + I++ ++ L+ I+AL+ + E +A
Sbjct: 298 QIGSGERSEKTRTYNFPQGRITDHRINLTTYRINETVKEGELEPIIEALIRENEARMLA 356
>gi|374812548|ref|ZP_09716285.1| peptide chain release factor 1 [Treponema primitia ZAS-1]
Length = 361
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 177/358 (49%), Positives = 248/358 (69%), Gaps = 28/358 (7%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT---KQKEID 121
M +R+ ++ RR L L+ PE K+ +K RD+M S+L T Q+EI+
Sbjct: 1 MNERLESLLRRYDELSGLIQDPELV--------KDQKKYRDTMREYSQLDTIAGTQREIE 52
Query: 122 GL-------KSLIYECSEDKDMLDMATEEL----CLAIDEEKRLQSLLLKSLLPKDDADE 170
+ K+LI + +D DM +MA EE D E RL+ LL+ PKD DE
Sbjct: 53 EISAQLADTKTLIQD-EKDPDMREMAKEESRELETHLKDAEDRLKFLLI----PKDPLDE 107
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ I+E+RAGTGG+EA+LFA D+++MY R+++ KGWKFE++ E++L G+KE +ISG
Sbjct: 108 KNIIMEIRAGTGGDEAALFASDLYRMYSRFAETKGWKFEIMSSNETELGGFKEIVFSISG 167
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
VY L++ESG+HRVQRVP TE SGR+HTSAV+VA+LP+ADE ++ +R EDLRID R+
Sbjct: 168 NNVYENLRYESGVHRVQRVPATEASGRIHTSAVTVAVLPEADETEIDIRTEDLRIDVMRA 227
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
GG GGQ NTT+SAVR+THIP+G+ + QDE+SQ NKAKA++VL A++YEME ++ S
Sbjct: 228 GGPGGQCVNTTDSAVRITHIPSGVVVQCQDEKSQIKNKAKAMRVLRARIYEMEEAKAAAS 287
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
RS+ R Q+GSGDRSERIRTYNFPQ R+TDHR+ +T + + +M+G+ ++F DAL L
Sbjct: 288 RSEARKNQVGSGDRSERIRTYNFPQNRLTDHRINLTLYKLDLIMQGDVEELF-DALKL 344
>gi|303326242|ref|ZP_07356685.1| peptide chain release factor 1 [Desulfovibrio sp. 3_1_syn3]
gi|345891915|ref|ZP_08842743.1| peptide chain release factor 1 [Desulfovibrio sp. 6_1_46AFAA]
gi|302864158|gb|EFL87089.1| peptide chain release factor 1 [Desulfovibrio sp. 3_1_syn3]
gi|345047775|gb|EGW51634.1| peptide chain release factor 1 [Desulfovibrio sp. 6_1_46AFAA]
Length = 356
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 238/353 (67%), Gaps = 5/353 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E++ LE + QP+ Y K K LR+ + L R Q+E+
Sbjct: 1 MFAKLEGLEKKYMELEEALAQPDVFNDQEHYRKLTKAHADLREIVDLFRRHRALQQEMAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+++ ED D+ DMA EE+ A E R++ L +LLP D DE++ ILE+RAGTG
Sbjct: 61 NKQLLHD--EDPDIRDMAHEEIRRAESELPRIEQALKVALLPTDPLDEKNTILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY++ +GWK E++ + S+ GYKE I+G VY +LKFE+G
Sbjct: 119 GEEAALFAADLFRMYTRYAELQGWKVEIMSESPSESGGYKEIICLIAGDRVYSRLKFEAG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VA++P+A+EVDV +R EDLRID YR+ G+GGQH N T
Sbjct: 179 THRVQRVPATETQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTE 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PT ++ QDERSQH NKA+A+KVL +++ ER R + S R Q+GSG
Sbjct: 239 SAVRITHLPTNTVVTCQDERSQHKNKARAMKVLASRILAAERERQNSELSADRKAQVGSG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
DRSERIRTYNFPQGR TDHR+ +T +++ +MEGE +F DAL + +A+
Sbjct: 299 DRSERIRTYNFPQGRCTDHRINLTLYSLDRIMEGELTPLF-DALSTAAQTEAL 350
>gi|402820806|ref|ZP_10870370.1| hypothetical protein IMCC14465_16040 [alpha proteobacterium
IMCC14465]
gi|402510452|gb|EJW20717.1| hypothetical protein IMCC14465_16040 [alpha proteobacterium
IMCC14465]
Length = 355
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 249/352 (70%), Gaps = 3/352 (0%)
Query: 66 EQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
E R+ AI R+ L+ +N E P E+ +KE +L + +++ R EI+ LKS
Sbjct: 4 EDRLDAILARAESLQEKMNG-ELPPQEFVTLSKEYARLEPVVAAVTQYRKLIDEINDLKS 62
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
+I D +M ++A EL ++ Q+ L LLPKD+AD+ + ILEVRAGTGG+E
Sbjct: 63 II--DGNDDEMKELAEAELPELEEKLPAAQNDLEIMLLPKDEADDMNVILEVRAGTGGDE 120
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA ++F+MY R+++ G+K E++G ++ ++ GYKE AAI G V+ +LKFESG+HR
Sbjct: 121 AALFAGNLFRMYCRHAELNGYKVEILGASDGEIGGYKEVVAAIRGDSVFARLKFESGVHR 180
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE SGR+HTSA +VA+LP+ +EVDV++ +DLR+D +R+ G GGQ NTT+SAV
Sbjct: 181 VQRVPETESSGRIHTSAATVAVLPEPEEVDVQIEEKDLRVDVFRASGPGGQSVNTTDSAV 240
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +S QDE+SQH N+AKA++VL A+L+E ER R+ RS R Q+GSGDRS
Sbjct: 241 RITHLPTGIVVSQQDEKSQHKNRAKAMQVLRARLFEAERDRLDSERSADRRSQVGSGDRS 300
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
ERIRTYN+PQGRVTDHR+ +T H + ++ G++LD IDALL + + +A+
Sbjct: 301 ERIRTYNYPQGRVTDHRINLTLHKLEKIVAGDSLDEVIDALLAEDQSRQLAA 352
>gi|328870409|gb|EGG18783.1| peptide chain release factor 1 [Dictyostelium fasciculatum]
Length = 530
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 172/345 (49%), Positives = 242/345 (70%), Gaps = 4/345 (1%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+V + E + L+ L+ +E K +KEL +LR+ ++ L K +E+ L+ ++
Sbjct: 174 KVYSNETKFDGLQRLIESQSLPQSEIKKVSKELDELREQVNSWKVLLVKCQELRELEEMV 233
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
E +DK+ ++ ++L +++ K + L+ SLLP D DE + I+E+RAGTGG EA
Sbjct: 234 SEV-KDKEEKELMNQDLKEMVEQVKDSERALVMSLLPSDKDDEGNAIMEIRAGTGGSEAQ 292
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK---EASAAISGVGVYGKLKFESGIH 244
LFA+++ MYE Y+Q GWKFEV+ + +D G K +ASA+ISG GV+G LK ESG+H
Sbjct: 293 LFALEMLGMYEGYAQTMGWKFEVLEIGWTDAVGNKACRDASASISGRGVFGFLKNESGVH 352
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQR+P TE GRVHTS V+VAILP+ EVD+++R+ +LRID YRS G+GGQ NTT+SA
Sbjct: 353 RVQRIPETETMGRVHTSTVTVAILPEPKEVDIKIRDSELRIDVYRSSGNGGQSVNTTDSA 412
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+TH+PTG +++QDERSQ MN+AKA+K+L A+LYE ERSR+H RS RS QIG R
Sbjct: 413 VRITHLPTGTVVAMQDERSQLMNRAKAMKILRARLYEAERSRLHNERSSHRSSQIGDASR 472
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
SE+IRTYNFPQ RVTDHRV I+ + I +M GE+L+ I+ ++LQ
Sbjct: 473 SEKIRTYNFPQDRVTDHRVNISTNNIESVMAGESLNDLIEEIILQ 517
>gi|58038522|ref|YP_190486.1| peptide chain release factor 1 [Gluconobacter oxydans 621H]
gi|81557234|sp|Q5FUR9.1|RF1_GLUOX RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|58000936|gb|AAW59830.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Gluconobacter
oxydans 621H]
Length = 353
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 248/353 (70%), Gaps = 8/353 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A RS ++ L++ E + ++++ ++E +L + I ++ +++ G ++L
Sbjct: 8 ERIVA---RSEEVQALMSSGELTGEDFTRLSQEYAELEPVVASIQAWKSAEEQKAGAQAL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ +D +M ++A EL LQ L +LLPKD ADER ILE+R GG+EA
Sbjct: 65 L----DDPEMRELAQMELAEIEATLPDLQHALRLALLPKDAADERSAILEIRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA ++F Y R+S++ GW+FEV+ E+++ G KE A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAELFDAYRRFSEQNGWRFEVMEYAENEVAGLKEGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTVNDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
VTH+P+G+ +++Q+E+SQH NKAKA+K+L A+LYE ER+++H +R+ R Q+G+GDRSE
Sbjct: 241 VTHMPSGIVVAMQEEKSQHKNKAKAMKILRARLYERERAQLHATRAADRKSQVGTGDRSE 300
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RIRTYNFPQGRVTDHR+ +T + I +M GE D IDAL +++ + +A+ G
Sbjct: 301 RIRTYNFPQGRVTDHRINLTLYKIDRIMGGE-FDEIIDALTREEQTELLAAEG 352
>gi|154246564|ref|YP_001417522.1| peptide chain release factor 1 [Xanthobacter autotrophicus Py2]
gi|226739122|sp|A7IIM2.1|RF1_XANP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|154160649|gb|ABS67865.1| peptide chain release factor 1 [Xanthobacter autotrophicus Py2]
Length = 360
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/320 (49%), Positives = 223/320 (69%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY + +E L + + L+ +++++G L+ E + D +M +MA E+ D
Sbjct: 31 EYVRLGREFSDLSPVVEQVRALKDAERDLEGANELLAESAADPEMREMAEAEVERLQDRI 90
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L + + +LLPKD DER ILEVRAGTGG+EA+LFA D+++MY RY+ +KGW E++
Sbjct: 91 EALATAVRLALLPKDAMDERGIILEVRAGTGGDEAALFAGDLYRMYTRYAAEKGWSVEIL 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E + GYKE AA+ G G Y +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A
Sbjct: 151 SESEGTMGGYKEIVAALHGRGAYARLKFESGVHRVQRVPATETSGRIHTSAATVAVLPEA 210
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VDV + DLRID YR+ G+GGQH N T SAVR+TH+PT +++QDERSQH NKA+A
Sbjct: 211 EDVDVDINEADLRIDVYRAQGAGGQHVNKTESAVRITHLPTNTVVAVQDERSQHRNKARA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ +L A+L + ER + R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 271 MALLRARLLDDERQKKEAGRAAERKGQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLD 330
Query: 392 DMMEGENLDIFIDALLLQQE 411
+++ G LD ID LL + +
Sbjct: 331 EVIAGTALDEIIDPLLTEHQ 350
>gi|357385917|ref|YP_004900641.1| peptide chain release factor 1 [Pelagibacterium halotolerans B2]
gi|351594554|gb|AEQ52891.1| peptide chain release factor 1 [Pelagibacterium halotolerans B2]
Length = 358
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 167/349 (47%), Positives = 243/349 (69%), Gaps = 6/349 (1%)
Query: 71 AIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
A+ERR +E + P+ P Y + +KE +L + + E R ++ G + L
Sbjct: 11 ALERRFDSIEAAMSGSPD--PDAYVRLSKEYSELSPMVAKVREYRAALSDLAGAEELA-- 66
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S D++M ++A EE+ ++ + L + LLPKD ADE+ ILEVRAGTGG+EA+LF
Sbjct: 67 KSGDREMAELAYEEMGELKEKIEALSQEIRILLLPKDAADEKSAILEVRAGTGGDEAALF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY+RY++ +GWK V+ +E D GYKE A +SG GV+ KLK+ESG+HRVQRV
Sbjct: 127 AGDLFRMYQRYAEAQGWKVTVMEASEGDAGGYKEIIANVSGAGVFAKLKYESGVHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGR+HTSA +VA+LP+ +++D+ +RNED+RIDT R+ G+GGQH NTT+SAVR+TH
Sbjct: 187 PDTEASGRIHTSAATVAVLPEVEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ ++ E+SQH N+A A+KVL A+L++ ++ + R++ R Q+GSGDRSERIR
Sbjct: 247 IPTGIVVT-SAEKSQHQNRANAMKVLRARLFDEQQHKASSERAESRKSQVGSGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
TYNFPQGRVTDHR+ +T + + ++ GE L IDAL+ + + +A+
Sbjct: 306 TYNFPQGRVTDHRINLTLYKLPQIITGEALGEVIDALITENQAAQLAAM 354
>gi|255083621|ref|XP_002508385.1| predicted protein [Micromonas sp. RCC299]
gi|226523662|gb|ACO69643.1| predicted protein [Micromonas sp. RCC299]
Length = 366
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/361 (47%), Positives = 247/361 (68%), Gaps = 3/361 (0%)
Query: 61 LIKIMEQRVLAIE-RRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+ +E+R+ A+ R A + LV P AE ++ NKEL + + + ++ ++ E
Sbjct: 1 MTPALERRLEAVSARHDALVAALVADPPPRAAEIARINKELARAERVVRAYAAVKERRHE 60
Query: 120 IDGLKSLIYECSE-DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
L+ +I E + D +M MA +EL + L+ L LLP D+AD+ ILEVR
Sbjct: 61 TASLEQVIAESAGVDAEMAQMAEDELATLEETTPALEETLAHLLLPADEADDSGVILEVR 120
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AG GG+EA+LFA D+ +MYE +++K GW+FE+V S+ G KEA+A+++G VYG+LK
Sbjct: 121 AGAGGDEAALFAADLLRMYEMFARKTGWRFELVAANASEAGGVKEATASLAGDDVYGRLK 180
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GRVHTS SVA+LPQA+ V++ +R++DL+IDT R+ G+GGQH
Sbjct: 181 FESGVHRVQRVPATETQGRVHTSTASVAVLPQAETVELDIRDDDLKIDTMRASGAGGQHV 240
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTTNSAVR+TH+PTG+T+ +QDERSQH NK KA+KVL A++YE+ER ++ +R+ R
Sbjct: 241 NTTNSAVRITHVPTGVTVVMQDERSQHKNKEKAMKVLRARVYELERRKLADARADQRRSL 300
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME-GENLDIFIDALLLQQEMDAIAS 417
IGSGDRSER+RTYN+ +GRV DHRV + + + +++ G+ L +DAL L++ +A
Sbjct: 301 IGSGDRSERVRTYNYKEGRVKDHRVNLLLNDLPGLLDGGDALTQMLDALKLEERRQLMAE 360
Query: 418 F 418
F
Sbjct: 361 F 361
>gi|189182919|ref|YP_001936704.1| peptide chain release factor 1 [Orientia tsutsugamushi str. Ikeda]
gi|238692229|sp|B3CQD1.1|RF1_ORITI RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189179690|dbj|BAG39470.1| peptide chain release factor RF-1 [Orientia tsutsugamushi str.
Ikeda]
Length = 359
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/338 (47%), Positives = 242/338 (71%), Gaps = 1/338 (0%)
Query: 79 LENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
LE +N + E + +KE L+ + ++ + I L+ +I + +D ++
Sbjct: 17 LEADLNGGKLDNKELALISKEYSNLKPIIEKLNRYLKAHENIKYLQQVI-DTEQDLELKS 75
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
+A EL ++ +L+ + SLLPK+ D ++ I+EVRAGTGG+EA+LFA +F+MY
Sbjct: 76 IAEVELYDTLNYLPKLEEEVKISLLPKESDDHKNAIIEVRAGTGGDEAALFAASLFQMYN 135
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++K WKFE++ ++++++ GYKEASA ISG GV+ LKFESG+HRVQR+P TE +GR+
Sbjct: 136 RYAERKKWKFELLSISDTEIGGYKEASALISGNGVFANLKFESGVHRVQRIPKTESNGRI 195
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +V +LP+A+EVDV++ +DL+IDTYR+ G+GGQH NTT+SAVR+THIPTG+ +S
Sbjct: 196 HTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVSQ 255
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QDE+SQH NKAKA+K+L A+LY++E+ + ++ R Q+G+GDRSERIRTYN+PQGRV
Sbjct: 256 QDEKSQHKNKAKAMKILYARLYDLEKQKSQQEQAMSRKVQVGTGDRSERIRTYNYPQGRV 315
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
TDHR+ +T + I ++++ LD I+ L+ + E IA
Sbjct: 316 TDHRINLTLYKIEEIIQEGKLDEIINNLISENEAKKIA 353
>gi|365900753|ref|ZP_09438615.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3843]
gi|365418514|emb|CCE11157.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3843]
Length = 361
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 155/315 (49%), Positives = 223/315 (70%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y + +EL +L + + R KE+ ++LI + + D +M MA E ++
Sbjct: 31 KYVQITRELAELNPVIDAVKAYRAAVKELADAETLIADSATDAEMRTMAEAEREELVERR 90
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 91 AELEQKIRLALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVI 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 SASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEV 210
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VDV ++NEDLRI+T R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH N+A A
Sbjct: 211 EDVDVDIKNEDLRIETMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQHKNRASA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ +L +++Y+ ER ++ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 271 MNILRSRIYDAERQKVDAARSADRKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLP 330
Query: 392 DMMEGENLDIFIDAL 406
++ GE L IDAL
Sbjct: 331 QVIAGEALGELIDAL 345
>gi|158426116|ref|YP_001527408.1| peptide chain release factor 1 [Azorhizobium caulinodans ORS 571]
gi|158333005|dbj|BAF90490.1| peptide chain release factor 1 [Azorhizobium caulinodans ORS 571]
Length = 357
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 162/326 (49%), Positives = 226/326 (69%), Gaps = 4/326 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY + +E L + + LR ++++ + L+ D +M D+A E+ E
Sbjct: 32 EYVRLGREFSDLSPVVEQVRALRAAERDLADARELLA----DPEMRDLAQSEVTRLEAEL 87
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L + +LLPKD DER ILEVRAGTGG+EA+LFA D+F+MY RY+ +KGW E++
Sbjct: 88 ETLAKEVRLALLPKDAMDERGVILEVRAGTGGDEAALFAGDLFRMYARYAAEKGWSVELL 147
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E + GYKE AA+ G G Y +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A
Sbjct: 148 SESEGTVGGYKEVVAAVHGRGAYARLKFESGVHRVQRVPDTETSGRIHTSAATVAVLPEA 207
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VDV + DLRID YR+ G+GGQH N T SAVR+THIPTGM +++QDERSQH NKA+A
Sbjct: 208 EDVDVDINESDLRIDVYRAQGAGGQHVNKTESAVRITHIPTGMVVAVQDERSQHRNKARA 267
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ +L +++ + ER + +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 268 MALLRSRMLDEERQKADANRAADRKGQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLD 327
Query: 392 DMMEGENLDIFIDALLLQQEMDAIAS 417
++M G+ LD ID LL + + +A+
Sbjct: 328 EVMTGQALDEIIDPLLTEHQASLMAA 353
>gi|170746587|ref|YP_001752847.1| peptide chain release factor 1 [Methylobacterium radiotolerans JCM
2831]
gi|226739115|sp|B1M766.1|RF1_METRJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|170653109|gb|ACB22164.1| peptide chain release factor 1 [Methylobacterium radiotolerans JCM
2831]
Length = 361
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 240/359 (66%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I +R+ AI R + + E P + ++EL L + I R + +
Sbjct: 1 MIPFPTERLDAILARHDIVTAQLASGEIDPETVVQLSRELSDLDPVVAAIRAYRAALENL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
G+++LI E D +M +A EE A+ + L LLPKD ADE+ ILEVRAG
Sbjct: 61 AGVEALIDEPGTDPEMRALAAEEKPEALAALETAHRALQLLLLPKDAADEKSAILEVRAG 120
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY +Y++ KGW+ EV+ +E + G++E A + G GV+ +LKFE
Sbjct: 121 TGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEGTVGGFREVVAEVKGRGVFARLKFE 180
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + + DL+IDT R+ G+GGQH N
Sbjct: 181 SGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDIHVNDADLKIDTMRAQGAGGQHVNK 240
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SA+R+TH+PTG+ + +Q+ERSQH N+A+A+ +L A+LYE ER+ +R+ R Q+G
Sbjct: 241 TESAIRITHLPTGIVVFVQEERSQHKNRARAMALLRARLYEAERNAKDSARAADRKAQVG 300
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SGDRSERIRTYNFPQGRVTDHR+ +T + + ++M G LD +DAL+ + + + +A+ G
Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAGTALDEVVDALITEHQAELLAAEG 359
>gi|386399803|ref|ZP_10084581.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM1253]
gi|385740429|gb|EIG60625.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM1253]
Length = 361
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/317 (50%), Positives = 225/317 (70%), Gaps = 6/317 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL +L + + R+ KE+ ++LI + + D +M MA +EL I+
Sbjct: 32 YVQITRELAELTPLIEAVKTYRSAVKELADTEALIADPATDAEMRAMAEAERDELTPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
+ L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 D---LVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA++P
Sbjct: 149 VISASEGSVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVMP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
+ +EVDV +RN+DLRI+T R+GG+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A
Sbjct: 209 EVEEVDVEIRNDDLRIETMRAGGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRA 268
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
A+ +L +++Y+ E+ R+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T +
Sbjct: 269 SAMNILRSRIYDAEQQRLDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYK 328
Query: 390 ISDMMEGENLDIFIDAL 406
+ +M GE L DAL
Sbjct: 329 LPQVMAGEALGELTDAL 345
>gi|393774342|ref|ZP_10362707.1| peptide chain release factor RF-1 [Novosphingobium sp. Rr 2-17]
gi|392720198|gb|EIZ77698.1| peptide chain release factor RF-1 [Novosphingobium sp. Rr 2-17]
Length = 356
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 158/326 (48%), Positives = 229/326 (70%), Gaps = 3/326 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ A+++ +L + +E+ + + E++ L+SL D +M +A EE+ E
Sbjct: 32 FVAASRDYAELEPVARIAAEIMSMRGELESLQSL---EDPDPEMRALAAEEVARLKTELP 88
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ + S+LP+D AD R +LE+RAGTGG+EA+LFA D+++MYERY+ + GW+ E+V
Sbjct: 89 EAERRMAISMLPRDAADARPAMLEIRAGTGGDEAALFAADLYRMYERYAAELGWRVEMVS 148
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
SD+ G+KE A ++G GV+ KLKFESG+HRVQRVP+TE GR+HTSA +VA+LP+
Sbjct: 149 ANASDVGGFKEVVANVTGNGVFAKLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEPT 208
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV++ ++DL+ID YR+ G+GGQH NTT+SAVR+TH+PT + + QDERSQH NKAKA+
Sbjct: 209 EVDVQIEDKDLKIDIYRASGAGGQHVNTTDSAVRITHLPTNLVVICQDERSQHKNKAKAM 268
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL A+LYE R + ++ R +GSGDRSERIRTYNFPQGRVTDHR+ +T H + +
Sbjct: 269 QVLRARLYEKMRDEAQGAEAEARKAMVGSGDRSERIRTYNFPQGRVTDHRINLTLHRLPE 328
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
++EG L IDAL+ + E +A+
Sbjct: 329 ILEGPGLVELIDALIAEDEAKRLAAM 354
>gi|197104299|ref|YP_002129676.1| peptide chain release factor 1 [Phenylobacterium zucineum HLK1]
gi|196477719|gb|ACG77247.1| peptide chain release factor RF-1 [Phenylobacterium zucineum HLK1]
Length = 377
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 233/325 (71%), Gaps = 6/325 (1%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + D++ + R +Q E++ + S D +M +A +EL +
Sbjct: 54 SKEHAELKPVADAVQALERARAEQPELEEMA-----ASGDAEMAALARDELEALKERLPE 108
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GW+ E+ +
Sbjct: 109 LEREVALLLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQTRGWRVEIDSI 168
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E D GYKE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+ ++
Sbjct: 169 SEGDAGGYKEIIASITGEGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEVED 228
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V++ +R++D+RIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH N+A+A+K
Sbjct: 229 VEIEVRDQDIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGIVVT-SSEKSQHQNRARAMK 287
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
VL A+LYE +R + +R++ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + ++ +
Sbjct: 288 VLKARLYEQQREALDSARAESRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYNLAKV 347
Query: 394 MEGENLDIFIDALLLQQEMDAIASF 418
MEGE LD I+ L+ + + +A+
Sbjct: 348 MEGEALDDVIEPLIAEDQAARLAAL 372
>gi|398378025|ref|ZP_10536193.1| peptide chain release factor 1 [Rhizobium sp. AP16]
gi|397725796|gb|EJK86243.1| peptide chain release factor 1 [Rhizobium sp. AP16]
Length = 359
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/329 (49%), Positives = 231/329 (70%), Gaps = 9/329 (2%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+EYS+ + K+RD I+E L++++ + S D++M D+A EL +
Sbjct: 37 SEYSELQPVVAKIRDYEKAIAEASD-------LEAMLADKSVDREMRDLADMELPEVKER 89
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
+ L+ + LLPKD ADE+ ILE+RAGTGG EA+LF D+F+MYER++ GWK E+
Sbjct: 90 IELLEQDIQILLLPKDAADEKSAILEIRAGTGGSEAALFGGDLFRMYERFAANNGWKVEI 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ ++ + GYKE A I+G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 LSASDGEAGGYKEVIATITGKGVFSRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR+TH+P+G+ ++ E+SQH N+AK
Sbjct: 210 AEEIDIEIRAEDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAK 268
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A++VL ++L++MER R RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 269 AMQVLRSRLFDMERQRADSERSADRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKL 328
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
MMEGE +D +DAL + +A G
Sbjct: 329 DRMMEGE-IDEVVDALRADYQASQLAQLG 356
>gi|222087303|ref|YP_002545840.1| peptide chain release factor 1 [Agrobacterium radiobacter K84]
gi|254790855|sp|B9JB75.1|RF1_AGRRK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|221724751|gb|ACM27907.1| peptide chain release factor 1 [Agrobacterium radiobacter K84]
Length = 359
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/329 (49%), Positives = 231/329 (70%), Gaps = 9/329 (2%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+EYS+ + K+RD I+E L++++ + S D++M D+A EL +
Sbjct: 37 SEYSELQPVVAKIRDYEKAIAEASD-------LEAMLADKSVDREMRDLADMELPEVKER 89
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
+ L+ + LLPKD ADE+ ILE+RAGTGG EA+LF D+F+MYER++ GWK E+
Sbjct: 90 IEVLEQDIQILLLPKDAADEKSAILEIRAGTGGSEAALFGGDLFRMYERFAANNGWKVEI 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ ++ + GYKE A I+G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 LSASDGEAGGYKEVIATITGKGVFSRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR+TH+P+G+ ++ E+SQH N+AK
Sbjct: 210 AEEIDIEIRAEDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAK 268
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A++VL ++L++MER R RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 269 AMQVLRSRLFDMERQRADSERSADRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKL 328
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
MMEGE +D +DAL + +A G
Sbjct: 329 DRMMEGE-IDEVVDALRADYQASQLAQLG 356
>gi|218672481|ref|ZP_03522150.1| peptide chain release factor 1 [Rhizobium etli GR56]
Length = 352
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 172/349 (49%), Positives = 242/349 (69%), Gaps = 7/349 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFDEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKAVA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E+ L +L+ + S D++M D+A EL + + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 ELADLDTLLEDKSVDREMRDLAELELPEVKERIEALEQEMQILLLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ +K WK EV+ +E + GYKE A I+G GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFAAEKSWKVEVLSASEGEAGGYKEIIATITGRGVFAKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R Q
Sbjct: 238 NTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+
Sbjct: 297 VGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALM 344
>gi|68171785|ref|ZP_00545129.1| Peptide chain release factor 1 [Ehrlichia chaffeensis str. Sapulpa]
gi|67998796|gb|EAM85504.1| Peptide chain release factor 1 [Ehrlichia chaffeensis str. Sapulpa]
Length = 311
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 222/309 (71%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
I + QK+I GL+ LI D ++ +A EE + +++ L SLLPKD D
Sbjct: 1 IDQYNILQKDIAGLEELINNPETDHELKSLAKEEFYERQKQLPKVKHKLKLSLLPKDKDD 60
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
R+ ILE+RAGTGGEEA+LF D+++MY +Y+++K WKFE + + + + G+KE S IS
Sbjct: 61 ARNAILEIRAGTGGEEAALFVTDLYRMYTKYAEQKNWKFEQINSSSTGIGGHKEISLCIS 120
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G V+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+ +EVD+++ +DLRID YR
Sbjct: 121 GSNVFARLKFESGVHRVQRVPETEASGRLHTSAATVAVLPEIEEVDLKIDEKDLRIDVYR 180
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
S G GGQ NTT+SAVR+THIP+G+ + QDE+SQH NK+KALKVL A+LY +E+ +
Sbjct: 181 SSGPGGQSVNTTDSAVRITHIPSGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKRDA 240
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
S++R QIGSGDRSERIRTYNFPQ R+TDHR+ +T + + D+M+ NLD FI+AL+ +
Sbjct: 241 EISQMRKSQIGSGDRSERIRTYNFPQSRITDHRINLTLYRLDDIMKEGNLDEFIEALIAE 300
Query: 410 QEMDAIASF 418
E + + +
Sbjct: 301 DEANKLKNL 309
>gi|383768854|ref|YP_005447917.1| peptide chain release factor 1 [Bradyrhizobium sp. S23321]
gi|381356975|dbj|BAL73805.1| peptide chain release factor 1 [Bradyrhizobium sp. S23321]
Length = 361
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 159/330 (48%), Positives = 231/330 (70%), Gaps = 6/330 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL ++ + + R+ KE+ ++LI + + D +M MA +EL I+
Sbjct: 32 YVQVTRELAEITPLIEAVKTYRSAVKELADTEALIADPTTDAEMRSMAEAERDELHPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 E---LVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA++P
Sbjct: 149 VISASEGTVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVMP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
+ +EVDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A
Sbjct: 209 EVEEVDVEIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRA 268
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
A+ +L +++Y+ E+ R+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T +
Sbjct: 269 SAMNILRSRIYDAEQQRLDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYK 328
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ ++ GE L IDAL + + +A+ G
Sbjct: 329 LPQVIAGEALGELIDALTTEHQAAQLAAQG 358
>gi|167842463|gb|ACA03159.1| RF1 [Dictyostelium fasciculatum]
Length = 515
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 172/345 (49%), Positives = 242/345 (70%), Gaps = 4/345 (1%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+V + E + L+ L+ +E K +KEL +LR+ ++ L K +E+ L+ ++
Sbjct: 159 KVYSNETKFDGLQRLIESQSLPQSEIKKVSKELDELREQVNSWKVLLVKCQELRELEEMV 218
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
E +DK+ ++ ++L +++ K + L+ SLLP D DE + I+E+RAGTGG EA
Sbjct: 219 SEV-KDKEEKELMNQDLKEMVEQVKDSERALVMSLLPSDKDDEGNAIMEIRAGTGGSEAQ 277
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK---EASAAISGVGVYGKLKFESGIH 244
LFA+++ MYE Y+Q GWKFEV+ + +D G K +ASA+ISG GV+G LK ESG+H
Sbjct: 278 LFALEMLGMYEGYAQTMGWKFEVLEIGWTDAVGNKACRDASASISGRGVFGFLKNESGVH 337
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQR+P TE GRVHTS V+VAILP+ EVD+++R+ +LRID YRS G+GGQ NTT+SA
Sbjct: 338 RVQRIPETETMGRVHTSTVTVAILPEPKEVDIKIRDSELRIDVYRSSGNGGQSVNTTDSA 397
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+TH+PTG +++QDERSQ MN+AKA+K+L A+LYE ERSR+H RS RS QIG R
Sbjct: 398 VRITHLPTGTVVAMQDERSQLMNRAKAMKILRARLYEAERSRLHNERSSHRSSQIGDASR 457
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
SE+IRTYNFPQ RVTDHRV I+ + I +M GE+L+ I+ ++LQ
Sbjct: 458 SEKIRTYNFPQDRVTDHRVNISTNNIESVMAGESLNDLIEEIILQ 502
>gi|323136601|ref|ZP_08071682.1| peptide chain release factor 1 [Methylocystis sp. ATCC 49242]
gi|322397918|gb|EFY00439.1| peptide chain release factor 1 [Methylocystis sp. ATCC 49242]
Length = 356
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 164/310 (52%), Positives = 225/310 (72%), Gaps = 1/310 (0%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E L D + I R Q+E+D L +++ + S D +M +A E A ++ + +
Sbjct: 34 SRERATLDDVVDAIRAWRDAQREVDDLAAMLADSSLDPEMRALAESETDGAREKLEAAAN 93
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L +LLPKD+ADE+ ILEVRAGTGG+EA+LFA D+F+ Y++Y+ KGW+ E+V +
Sbjct: 94 TLRLALLPKDEADEKGVILEVRAGTGGDEAALFAGDLFRAYQKYAALKGWRVELVSESPG 153
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
L G+KE A I G GVYG+LKFESG+HRVQRVP TE GR+HTSA +VA+LPQA++VD+
Sbjct: 154 ALGGFKEIVAEIIGRGVYGRLKFESGVHRVQRVPETETQGRIHTSAATVAVLPQAEDVDI 213
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLC 336
+ +DL+IDT R+ G+GGQH N T SA+R+THIP+G+ + +Q+ERSQH NKAKA+ VL
Sbjct: 214 DIDEKDLQIDTMRAQGAGGQHVNKTESAIRITHIPSGIVVMMQEERSQHRNKAKAMNVLR 273
Query: 337 AKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEG 396
++LY+ ER R+ RS R +Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG
Sbjct: 274 SRLYDAERQRLDKERSDDRKQQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG 333
Query: 397 ENLDIFIDAL 406
E D IDAL
Sbjct: 334 E-FDEIIDAL 342
>gi|386347700|ref|YP_006045949.1| Peptide chain release factor 1 [Spirochaeta thermophila DSM 6578]
gi|339412667|gb|AEJ62232.1| Peptide chain release factor 1 [Spirochaeta thermophila DSM 6578]
Length = 357
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 157/292 (53%), Positives = 218/292 (74%), Gaps = 1/292 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E +D ++ +MA EE+ E R + L L+P D D ++ ILE+RAGTGGEEA
Sbjct: 66 VLEEEDDHELKEMAREEIKALEGEIARTEQRLKLLLVPPDPLDGKNIILEIRAGTGGEEA 125
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA D+++MY RY+++KGWK E++ +E++L G++E AISG VYG L+FESG HRV
Sbjct: 126 ALFAADLYRMYARYAERKGWKMEIMEASETELGGFRELVCAISGKEVYGHLRFESGGHRV 185
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE GR+HTSAV+VA+LP+ +E +V +R ED+R+D +RS G GGQ NTT+SAVR
Sbjct: 186 QRIPVTESGGRIHTSAVTVAVLPEPEETEVEIRPEDIRVDVFRSSGPGGQSVNTTDSAVR 245
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ +S QDE+SQH NKAKALK+L A+LYEME+ R R+ +R QIGSGDRSE
Sbjct: 246 ITHLPTGLVVSCQDEKSQHKNKAKALKILRARLYEMEKQRQESERAAMRRSQIGSGDRSE 305
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
RIRTYNFPQ RVTDHR+ +T + + +M+G +LD IDAL L + +A+++
Sbjct: 306 RIRTYNFPQNRVTDHRINLTLYKLEAVMDG-DLDEIIDALRLAVQEEALSTM 356
>gi|395764564|ref|ZP_10445190.1| peptide chain release factor 1 [Bartonella sp. DB5-6]
gi|395414391|gb|EJF80834.1| peptide chain release factor 1 [Bartonella sp. DB5-6]
Length = 359
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 174/360 (48%), Positives = 248/360 (68%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAET--YVKLASEYAELQPIVTSIRTLNALHTE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETIISDKLTDTEMRNLAQEELPLLYQKMEQLEQELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLNEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L++++R + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIKRQKAESERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGR+TDHR+ +T + + ++EG +LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRITDHRINLTLYKLDRVLEG-DLDEIIHALISDHQTALLMEMD 356
>gi|281208935|gb|EFA83110.1| peptide chain release factor 1 [Polysphondylium pallidum PN500]
Length = 463
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 179/402 (44%), Positives = 255/402 (63%), Gaps = 31/402 (7%)
Query: 27 RNPLLHQRWFVQRAAATPSLSNFR----------SYSTEMLSNDLIKIMEQRVLAIERRS 76
RN LL + + T L+++R S+S+ S L ++ ++ + +
Sbjct: 60 RNSLLSTTFLINNR--TNQLNSYRYSTTNNNDDYSFSSPYFSTTLSTALQNKLKMMSNKY 117
Query: 77 ACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
L++L+ S + + + + +++ +S+ L R EI +K L K M
Sbjct: 118 TTLKSLMESQTLSQEDIKRTSNDAQQIEESVQL---FRQYVNEIGNIKEL-------KMM 167
Query: 137 LDMATEELC--LAIDEEKR-------LQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
LDM EE + I++ K L+ L+ SLLP D D+ + I+E+RAGTGG EA
Sbjct: 168 LDMEKEEASREMIIEDLKAMGEQLAALEKSLIYSLLPADKDDDGNAIIEIRAGTGGGEAQ 227
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA ++F+MYE Y+ KGW+FE + ++ +D+ G +EASAAISG GV+G LK ESG+HRVQ
Sbjct: 228 LFAHEMFRMYEGYAATKGWRFESLDISYTDVGGCREASAAISGKGVFGFLKNESGVHRVQ 287
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
R+P TE GR+HTS +VAI+P+ EVD+++ + DL+ID +RS G+GGQ NTT+SAVR+
Sbjct: 288 RIPDTETQGRIHTSTTTVAIMPEPKEVDIKINDRDLKIDVFRSSGNGGQSVNTTDSAVRI 347
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
H+PTG+T+S+QDERSQ NK+KA+KVL A+LYEMER R+ RS R+ QIG RSER
Sbjct: 348 VHLPTGITVSMQDERSQLQNKSKAMKVLRARLYEMERVRLQTERSAERNSQIGGATRSER 407
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
IRTYNFPQ RVTDHRV IT + I +M GE L FI+ ++LQ
Sbjct: 408 IRTYNFPQDRVTDHRVNITTNDIDAIMTGETLGDFIEDIMLQ 449
>gi|114704325|ref|ZP_01437233.1| peptide chain release factor 1 [Fulvimarina pelagi HTCC2506]
gi|114539110|gb|EAU42230.1| peptide chain release factor 1 [Fulvimarina pelagi HTCC2506]
Length = 359
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 161/328 (49%), Positives = 233/328 (71%), Gaps = 2/328 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E L + + I E R + E+ +SL+ + D++M ++A E+ +
Sbjct: 32 YSKLAAEYASLEEVVAAIREFRALETELADAESLLDDPESDREMRNLAGVEVDDLRSRRE 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLPKD ADE+ ILE+RAGTGG EA LFA D+++MY+RY++ WK E++
Sbjct: 92 GLRGRIQILLLPKDSADEKGAILEIRAGTGGSEAGLFAGDLYRMYQRYAELNRWKVELLS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E ++ G+KE AAI G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 ASEGEVGGFKEVIAAIKGNGVFSRLKFESGVHRVQRVPETESGGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
++D+ +RNED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+A+A+
Sbjct: 212 DIDIDVRNEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQHQNRAQAM 270
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL AKLY+MER + RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 271 QVLKAKLYDMERQKYDDERSAARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDK 330
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFGS 420
++EGE ++ +DAL+ + +A+ G+
Sbjct: 331 VIEGE-MEELVDALVADHQAKLLAAVGA 357
>gi|88608013|ref|YP_506293.1| peptide chain release factor 1 [Neorickettsia sennetsu str.
Miyayama]
gi|119361566|sp|Q2GE03.1|RF1_NEOSM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|88600182|gb|ABD45650.1| peptide chain release factor 1 [Neorickettsia sennetsu str.
Miyayama]
Length = 367
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 160/343 (46%), Positives = 245/343 (71%), Gaps = 1/343 (0%)
Query: 75 RSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R L + + PEA + E+SK +KE +L+ + LI+ + ++E L+ L+ ED
Sbjct: 14 RHTYLADRLRCPEAIASQEFSKLSKEYAELKPKVELIARYKKLKEEQAYLELLVKNPLED 73
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+++ ++ +L D +L+ + + LLPKD D + +LEVRAGTGG+EA+LFA +
Sbjct: 74 QEIREIGKSDLQAIQDVIPKLELEIKRMLLPKDKDDALNVMLEVRAGTGGDEAALFAASL 133
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F MY++Y+++ W+FE++ ++ +++ GYKEA+A+ISG V+ KLKFESG+HRVQRVP TE
Sbjct: 134 FHMYQKYAERMKWRFEIISISHNEIGGYKEANASISGSDVFAKLKFESGVHRVQRVPETE 193
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
+GR+HTS +VA+LP+ ++VDV++ ++DLRID YRS G GGQ NTT+SAVR+THIPTG
Sbjct: 194 SAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTG 253
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ + QDE+SQH N+AKA+KVL +LYE+ER+++ S +R QIGSG+RSE+ RTYNF
Sbjct: 254 IVVIQQDEKSQHKNRAKAMKVLRVRLYEIERNKVQQEISSMRKSQIGSGERSEKTRTYNF 313
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
PQGR+TDHR+ +T + I++ ++ L+ I+AL+ + E +A
Sbjct: 314 PQGRITDHRINLTTYRINETVKEGELEPIIEALIRENEARMLA 356
>gi|398831037|ref|ZP_10589216.1| peptide chain release factor 1 [Phyllobacterium sp. YR531]
gi|398212605|gb|EJM99207.1| peptide chain release factor 1 [Phyllobacterium sp. YR531]
Length = 358
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 164/347 (47%), Positives = 244/347 (70%), Gaps = 5/347 (1%)
Query: 62 IKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ I + R+ + +R + +E + + P++ Y K E +L + I + + + E
Sbjct: 1 MSIPQDRMDQLLKRFSMMETQMASNPDSET--YVKLASEYSELEPVVFKIRDFLSARSEA 58
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
L++++ + S D+DM ++A EL + + L+ + LLPKD ADER+ ILE+RAG
Sbjct: 59 ADLQAMLDDVSTDRDMRELAEAELPEIEERIEVLEQDIQVLLLPKDVADERNAILEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG EA+LF D+F+MYERY+ GW+ E++ ++ + GYKE A +SG GV+ KLKFE
Sbjct: 119 TGGSEAALFGGDLFRMYERYASANGWRVELISASDGEAGGYKEVIAMVSGRGVFAKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R +D+RIDT R+ GSGGQH NT
Sbjct: 179 SGVHRVQRVPDTEASGRIHTSAATVAVLPEAEEIDIEIRPDDIRIDTMRASGSGGQHVNT 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+THIP+G+ + +Q E+SQH N+A+A++VL ++L++M+R + RS+ R Q+G
Sbjct: 239 TDSAVRITHIPSGIVV-VQAEKSQHQNRARAMQVLRSRLFDMQRQKADSERSEARRSQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD I L+
Sbjct: 298 SGDRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEG-DLDELIGGLI 343
>gi|414343457|ref|YP_006984978.1| peptide chain release factor 1 [Gluconobacter oxydans H24]
gi|411028792|gb|AFW02047.1| peptide chain release factor 1 [Gluconobacter oxydans H24]
Length = 353
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 243/353 (68%), Gaps = 8/353 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A RS ++ L++ E E+++ ++E +L + I + +K+ +G ++L
Sbjct: 8 ERIVA---RSEEIQALMSSGEMGGEEFTRLSREYAELEPVVASIQAWQAAEKQREGARAL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ D +M ++A EL L+ L +LLPKD ADER ILE+R GG+EA
Sbjct: 65 LA----DPEMKELAQAELEDIEAHIPELEHNLRIALLPKDAADERSAILEIRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA +F Y R+S++ GW+FEV+ E+++ G K+ A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAQLFDAYRRFSEQNGWRFEVMEYAENEVAGLKDGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+THIPTG+ +++Q+E+SQH N+AKA+K+L A+LYE +RS H SR+ R Q+G+GDRSE
Sbjct: 241 ITHIPTGVVVAMQEEKSQHKNRAKAMKILRARLYERQRSAAHESRAADRKSQVGTGDRSE 300
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RIRTYNFPQGRVTDHR+ +T + I +M GE D IDAL +++ + +A+ G
Sbjct: 301 RIRTYNFPQGRVTDHRINLTLYKIERIMAGE-FDEIIDALTREEQTELLAAEG 352
>gi|367465545|ref|YP_002516272.3| peptide chain release factor 1 [Caulobacter crescentus NA1000]
gi|220963008|gb|ACL94364.1| bacterial peptide chain Release factor 1 (RF-1) [Caulobacter
crescentus NA1000]
Length = 335
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 159/326 (48%), Positives = 240/326 (73%), Gaps = 10/326 (3%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ E+D + S D +M +M +E+ A+DE+
Sbjct: 14 SKEHAELRPVAEAVERLAKLSAERAELDVMAS-------DPEMAEMVRDEIQ-ALDEKLP 65
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GW+ E+
Sbjct: 66 VMERELALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQTQGWRVEIDS 125
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++E ++ G+KE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 126 ISEGEMGGFKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 185
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+V++ ++ DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH N+A+A+
Sbjct: 186 DVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQHQNRARAM 244
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K L A+LY+M+R + +RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + ++
Sbjct: 245 KNLKARLYDMQREALDSARSEARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYNLAR 304
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
+MEG+ LD I+ L+ + + + +AS
Sbjct: 305 IMEGDALDDVINPLIAEDQAERLASL 330
>gi|22096040|sp|Q9A9V5.2|RF1_CAUCR RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 356
Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 159/326 (48%), Positives = 240/326 (73%), Gaps = 10/326 (3%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ E+D + S D +M +M +E+ A+DE+
Sbjct: 35 SKEHAELRPVAEAVERLAKLSAERAELDVMAS-------DPEMAEMVRDEIQ-ALDEKLP 86
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GW+ E+
Sbjct: 87 VMERELALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQTQGWRVEIDS 146
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++E ++ G+KE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 147 ISEGEMGGFKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 206
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+V++ ++ DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH N+A+A+
Sbjct: 207 DVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQHQNRARAM 265
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K L A+LY+M+R + +RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + ++
Sbjct: 266 KNLKARLYDMQREALDSARSEARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYNLAR 325
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
+MEG+ LD I+ L+ + + + +AS
Sbjct: 326 IMEGDALDDVINPLIAEDQAERLASL 351
>gi|54288338|gb|AAV31626.1| predicted protein chain release factor A [uncultured alpha
proteobacterium EBAC2C11]
Length = 335
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 158/296 (53%), Positives = 213/296 (71%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+E ++ +EL +LR I +R + E+ ++ E ED DML+M E L
Sbjct: 30 SELAQLARELSELRPICDQIELVRRIEAELADALLMVEEAGEDADMLEMVQAEAGLLKTR 89
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
S L LLPKD D R+ ILEVRAGTGG+EA+LFA ++F MY+R++ K GW FEV
Sbjct: 90 LPEAHSALQIMLLPKDKDDARNAILEVRAGTGGDEAALFASNLFSMYQRFAAKHGWNFEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ V+E+ + GYKEA+A ISG V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 MEVSETGIGGYKEATATISGNDVFARLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A++VD+R+ DLR+D +R+ G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQH N+AK
Sbjct: 210 AEDVDIRIDESDLRVDVFRASGPGGQSVNTTDSAVRITHLPTGIVVSQQDEKSQHKNRAK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
A+K+L A++Y+ ER+R+ R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ T
Sbjct: 270 AMKILRARIYDAERARVEAQRAAERKGQVGSGDRSERIRTYNFPQGRVTDHRINFT 325
>gi|395780955|ref|ZP_10461399.1| peptide chain release factor 1 [Bartonella washoensis 085-0475]
gi|395416830|gb|EJF83192.1| peptide chain release factor 1 [Bartonella washoensis 085-0475]
Length = 359
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 170/348 (48%), Positives = 245/348 (70%), Gaps = 5/348 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L +
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAENPNAET--YVKLASEYAELQPIVTSIRTLNALYVD 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I GL+++I + D +M ++A EEL + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITGLETIISDKLTDVEMRNLAQEELPSLWQKIEQLEQELQILLLPKDVADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV ++E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANTHNWKVEVVSLSEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAERERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +L+ I AL+
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLNELIHALI 344
>gi|16125109|ref|NP_419673.1| peptide chain release factor 1 [Caulobacter crescentus CB15]
gi|13422113|gb|AAK22841.1| peptide chain release factor 1 [Caulobacter crescentus CB15]
Length = 385
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/326 (48%), Positives = 240/326 (73%), Gaps = 10/326 (3%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ E+D + S D +M +M +E+ A+DE+
Sbjct: 64 SKEHAELRPVAEAVERLAKLSAERAELDVMAS-------DPEMAEMVRDEIQ-ALDEKLP 115
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GW+ E+
Sbjct: 116 VMERELALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQTQGWRVEIDS 175
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++E ++ G+KE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 176 ISEGEMGGFKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 235
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+V++ ++ DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH N+A+A+
Sbjct: 236 DVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQHQNRARAM 294
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K L A+LY+M+R + +RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + ++
Sbjct: 295 KNLKARLYDMQREALDSARSEARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYNLAR 354
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
+MEG+ LD I+ L+ + + + +AS
Sbjct: 355 IMEGDALDDVINPLIAEDQAERLASL 380
>gi|398826725|ref|ZP_10584962.1| peptide chain release factor 1 [Bradyrhizobium sp. YR681]
gi|398220670|gb|EJN07113.1| peptide chain release factor 1 [Bradyrhizobium sp. YR681]
Length = 361
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 155/314 (49%), Positives = 222/314 (70%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R+ KE+ ++LI + + D +M MA E + +
Sbjct: 32 YVQITRELAELSPLIDAVKTYRSAVKELADTEALIADATTDAEMRSMAEAERAELTPKIE 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 DVDVEIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ E+ RI+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAEQQRINAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDAL 406
++ GE L DAL
Sbjct: 332 VIAGEALGELTDAL 345
>gi|338972237|ref|ZP_08627612.1| peptide chain release factor 1 [Bradyrhizobiaceae bacterium SG-6C]
gi|414169115|ref|ZP_11424952.1| peptide chain release factor 1 [Afipia clevelandensis ATCC 49720]
gi|338234401|gb|EGP09516.1| peptide chain release factor 1 [Bradyrhizobiaceae bacterium SG-6C]
gi|410885874|gb|EKS33687.1| peptide chain release factor 1 [Afipia clevelandensis ATCC 49720]
Length = 361
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/327 (48%), Positives = 223/327 (68%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R+ EI G+ +LI + + D +M MA E
Sbjct: 32 YVRITRELSELAPVVDAVKAYRSAVDEIGGIDALIADAATDPEMRSMAESERPELEARRD 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK +++
Sbjct: 92 ELAQDIRIALLPKDAMDERNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVDLIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 ASEGTMGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV +++ DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 EVDVAIKDTDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ ER R+ RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAERQRLDSERSAERKGQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
++ G+ L +DAL + + +A G
Sbjct: 332 VIAGDALGELVDALTTEHQAKLLAEQG 358
>gi|297182948|gb|ADI19096.1| protein chain release factor a [uncultured alpha proteobacterium
HF0070_34A12]
Length = 353
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 243/355 (68%), Gaps = 8/355 (2%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLR---DSMHLISELRTKQKEIDGLK 124
+VLA RR+ L + SP E + ++EL +LR + + L+ L + L
Sbjct: 3 KVLA--RRNEVESRLADAASMSPDELASLSRELSELRPVCEQIDLVKRLEGDRDAAVMLA 60
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
E +E +M +E+ + EE LLL LP+D D R+ ILEVRAGTGG+
Sbjct: 61 EEAAEDAEMAEMAQAEIQEIEARLPEEMNSLQLLL---LPRDRDDSRNAILEVRAGTGGD 117
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY+R++ K GW+FEV+ V+E+ + GYKEA+A I+G V+ +LKFESG+H
Sbjct: 118 EAALFASDLFGMYQRFAGKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFESGVH 177
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSA +VA+LP+A++VD+ ++ DLRID +R+ G GGQ NTT+SA
Sbjct: 178 RVQRVPETEAGGRIHTSAATVAVLPEAEDVDIDVQESDLRIDVFRASGPGGQSVNTTDSA 237
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+THIPTG+ +S QDE+SQH N+AKA+K+L A+LY+ ER+R+ R+ R Q+GSGDR
Sbjct: 238 VRITHIPTGIVVSQQDEKSQHKNRAKAMKILRARLYDAERARLQAERAASRKGQVGSGDR 297
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SERIRTYNFPQGRVTDHR+ +T + + ++ GE LD ++AL+ + + +A G
Sbjct: 298 SERIRTYNFPQGRVTDHRINLTLYKLDKVIAGEALDEVVEALVAEDQAQRLAEGG 352
>gi|295688344|ref|YP_003592037.1| peptide chain release factor 1 [Caulobacter segnis ATCC 21756]
gi|295430247|gb|ADG09419.1| peptide chain release factor 1 [Caulobacter segnis ATCC 21756]
Length = 356
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 236/325 (72%), Gaps = 8/325 (2%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + +++ +++L ++ E+D + + D +M DM +E+ ++
Sbjct: 35 SKEHAELKPVAEAVERLAKLSAERAELDVMAA-------DPEMADMVRDEMAELDEKLPV 87
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q GW+ E+ +
Sbjct: 88 LERDLALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQLHGWRVEIDSI 147
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E ++ GYKE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A++
Sbjct: 148 SEGEMGGYKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAED 207
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V++ ++ DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH N+A+A+K
Sbjct: 208 VEIDIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQHQNRARAMK 266
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
L A+LY+M+R + +RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +S +
Sbjct: 267 NLKARLYDMQREALDSARSEARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYNLSRI 326
Query: 394 MEGENLDIFIDALLLQQEMDAIASF 418
MEG+ LD I+ L+ + + + +AS
Sbjct: 327 MEGDALDDVINPLIAEDQAERLASL 351
>gi|319406093|emb|CBI79723.1| peptide chain release factor 1 [Bartonella sp. AR 15-3]
Length = 359
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/360 (47%), Positives = 249/360 (69%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L + KE
Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAET--YVKLASEYAELQPIIVSIRALNSLCKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I ++++I + D +M ++A EEL + + L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITDIETIISDTQTDTEMRNLAQEELSSLYQKIQELEQELQILLLPKDIADEKSVIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EV+ +++ ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANTHNWKVEVISLSDGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ + ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEICPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKTQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +L+ I+AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINMTLYKLDRIMEG-DLNELINALISDHQTTLLTEMD 356
>gi|148258772|ref|YP_001243357.1| peptide chain release factor 1 [Bradyrhizobium sp. BTAi1]
gi|146410945|gb|ABQ39451.1| bacterial peptide chain release factor 1 (bRF-1) [Bradyrhizobium
sp. BTAi1]
Length = 361
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/314 (49%), Positives = 220/314 (70%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + + D +M MA E I
Sbjct: 32 YVQITRELAELNPLIEAVKAYRAGVKELADTEALIADPATDAEMRAMAEAERDELIARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 EVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ ER ++ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAERQKVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDAL 406
++ GE L IDAL
Sbjct: 332 VIAGEALGELIDAL 345
>gi|407775618|ref|ZP_11122911.1| peptide chain release factor 1 [Thalassospira profundimaris WP0211]
gi|407281295|gb|EKF06858.1| peptide chain release factor 1 [Thalassospira profundimaris WP0211]
Length = 360
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 240/351 (68%), Gaps = 1/351 (0%)
Query: 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYEC 130
+ RR L +L++ E +SK ++E +L + I + +++ + ++ +
Sbjct: 10 GVTRRFDELNSLLSSGELDGDGFSKLSREHAELAPVVEAIEAYKKLLNDLEEAEEILADP 69
Query: 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D+DM +MA E D+ + + L+PKD AD ++ ILE+RAGTGGEEA+LFA
Sbjct: 70 QSDRDMREMAEAEKYDIQDKLPEAERQMKLMLIPKDTADTKNAILEIRAGTGGEEAALFA 129
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+++MY+RY++ +GWKFE + +E+DL G+KE +SG V+ +LKFESG+HRVQRVP
Sbjct: 130 ADLYRMYQRYAEGRGWKFEQMDASENDLGGFKEVIVNVSGTDVFARLKFESGVHRVQRVP 189
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
+TE GR+HTSA +VA+LP+A+EVD+++ +DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 VTEGGGRIHTSAATVAVLPEAEEVDIKIDPKDLRIDTYRSQGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + Q+ +SQH NK KA+K+L ++LY+ ER R+ R Q+GSGDRSERIRT
Sbjct: 250 PTGVVAASQEAKSQHKNKEKAMKMLMSRLYDQERESKDSERAADRKSQVGSGDRSERIRT 309
Query: 371 YNFPQGRVTDHRVGITHHAISDMME-GENLDIFIDALLLQQEMDAIASFGS 420
YNFPQGRV+DHR+ +T + + D + G +D IDAL+ +++ +A S
Sbjct: 310 YNFPQGRVSDHRINLTLYRLDDFIAGGPAVDEMIDALIAEEQAQKLAEIES 360
>gi|307719604|ref|YP_003875136.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192]
gi|306533329|gb|ADN02863.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192]
Length = 357
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/296 (53%), Positives = 222/296 (75%), Gaps = 9/296 (3%)
Query: 127 IYECSEDKDMLDMATEELCLAIDE----EKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ E +D ++ +MA EE+ D+ E+RL+ LL+ P D D ++ ILE+RAGTG
Sbjct: 66 VLEEEDDHELKEMAREEIKALEDQILHTEQRLKLLLV----PPDPLDGKNIILEIRAGTG 121
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+++MY RY+++KGWK E++ +E++L G++E AISG VYG L+FESG
Sbjct: 122 GEEAALFAADLYRMYARYAERKGWKMEIMEASETELGGFRELVCAISGKEVYGHLRFESG 181
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQR+P+TE GR+HTSAV+VA+LP+ +E +V +R ED+R+D +RS G GGQ NTT+
Sbjct: 182 GHRVQRIPVTESGGRIHTSAVTVAVLPEPEETEVEIRPEDIRVDVFRSSGPGGQSVNTTD 241
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ ++ QDE+SQH NKAKALK+L A+LYEME+ R R+ +R QIGSG
Sbjct: 242 SAVRITHLPTGLVVTCQDEKSQHKNKAKALKILRARLYEMEKQRQESERAAMRRSQIGSG 301
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
DRSERIRTYNFPQ RVTDHR+ +T + + +M+G +LD IDAL L + +A+++
Sbjct: 302 DRSERIRTYNFPQNRVTDHRINLTLYKLEAVMDG-DLDEIIDALRLAVQEEALSTM 356
>gi|27375329|ref|NP_766858.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110]
gi|32171530|sp|Q89XT9.1|RF1_BRAJA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|27348465|dbj|BAC45483.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110]
Length = 361
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/318 (50%), Positives = 226/318 (71%), Gaps = 8/318 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
Y + +EL ++ + + R+ KE+ ++LI + + D +M MA E DE
Sbjct: 32 YVQITRELAEITPLIEAVKTYRSAVKELADTEALIADPATDAEMRGMAEAER----DELA 87
Query: 152 KRLQSLLLK---SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
R++ L+ K +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK
Sbjct: 88 PRIEDLVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKV 147
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+L
Sbjct: 148 EVISASEGTVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVL 207
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
P+ ++VDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+
Sbjct: 208 PEVEDVDVDIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNR 267
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
A A+ +L +++Y+ ER R+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T +
Sbjct: 268 ASAMNILRSRIYDAERQRVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLY 327
Query: 389 AISDMMEGENLDIFIDAL 406
+ ++ GE L IDAL
Sbjct: 328 KLPQVIAGEALGELIDAL 345
>gi|453331298|dbj|GAC86877.1| peptide chain release factor 1 [Gluconobacter thailandicus NBRC
3255]
Length = 353
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 243/353 (68%), Gaps = 8/353 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A R+ ++ L++ E E+++ ++E +L + I + +K+ +G ++L
Sbjct: 8 ERIVA---RAEEIQALMSSGEMGGEEFTRLSREYAELEPVVASIQAWQAAEKQREGARAL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ D +M ++A EL L+ L +LLPKD ADER ILE+R GG+EA
Sbjct: 65 LA----DPEMKELAQAELEDIEAHIPELEHNLRIALLPKDAADERSAILEIRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA +F Y R+S++ GW+FEV+ E+++ G K+ A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAQLFDAYRRFSEQNGWRFEVMEYAENEVAGLKDGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+THIPTG+ +++Q+E+SQH N+AKA+K+L A+LYE +RS H SR+ R Q+G+GDRSE
Sbjct: 241 ITHIPTGVVVAMQEEKSQHKNRAKAMKILRARLYERQRSAAHESRAADRKSQVGTGDRSE 300
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RIRTYNFPQGRVTDHR+ +T + I +M GE D IDAL +++ + +A+ G
Sbjct: 301 RIRTYNFPQGRVTDHRINLTLYKIERIMAGE-FDEIIDALTREEQTELLAAEG 352
>gi|90420193|ref|ZP_01228101.1| peptide chain release factor 1 [Aurantimonas manganoxydans
SI85-9A1]
gi|90335527|gb|EAS49277.1| peptide chain release factor 1 [Aurantimonas manganoxydans
SI85-9A1]
Length = 359
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/327 (48%), Positives = 234/327 (71%), Gaps = 2/327 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y+K E L + + I + ++E+ ++++ E + +DM ++A E+ ++ +
Sbjct: 32 YTKLAAEYSGLEEVVAAIRTYQKAEQELAEARAILDEPAAGRDMRELAEIEIDELKEQLE 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + + LLPKD ADE+ ILE+RAGTGG EA LFA D+F+MY+RY++ WK E++
Sbjct: 92 TLTAEIRILLLPKDAADEKGAILEIRAGTGGSEAGLFAGDLFRMYQRYAEMNRWKVEIIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E ++ GY+E AAI GVGV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 ASEGEVGGYREVIAAIRGVGVFSRLKFESGVHRVQRVPETESGGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
++DV ++ ED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+A+A+
Sbjct: 212 DIDVEVKTEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQHQNRARAM 270
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL A+L++MER R RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 271 QVLKARLFDMERQRADDERSAARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDR 330
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
++EGE +D +DAL+ + +A+ G
Sbjct: 331 VIEGE-MDELVDALIADHQAHLLAAVG 356
>gi|147679165|ref|YP_001213380.1| protein chain release factor A [Pelotomaculum thermopropionicum SI]
gi|189039982|sp|A5CYC3.1|RF1_PELTS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|146275262|dbj|BAF61011.1| protein chain release factor A [Pelotomaculum thermopropionicum SI]
Length = 349
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/350 (48%), Positives = 242/350 (69%), Gaps = 10/350 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE-----ASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
M +++ +IE++ LENL+ PE A EY KA+ EL D + + + + KE
Sbjct: 1 MIEKLDSIEKKYEELENLIGNPEIIADIARWQEYVKAHAELA---DIVAVYRDYKKVVKE 57
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I +L+ E D+D+ +MA EL +++ L++ L LLPKD DE++ ILE+RA
Sbjct: 58 IQDTIALMKE-EPDEDLREMAQAELDELTEKKDNLENRLKMLLLPKDPNDEKNVILEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+F+MY RY++++GW+ E++ +D+ G+KE + I G GVY ++KF
Sbjct: 117 GTGGEEAALFAADLFRMYSRYAERQGWRTEILDANYTDIGGFKEVISLIEGKGVYSRMKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+EVDV++ +DLRID + S G GGQ N
Sbjct: 177 ESGVHRVQRIPTTESGGRIHTSAATVAVLPEAEEVDVQIDPDDLRIDVFCSSGHGGQSVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT SAVR+THIPTG+ +S+QDE+SQH NK KA+KVL A+L + + + R +
Sbjct: 237 TTQSAVRITHIPTGIVVSMQDEKSQHKNKEKAMKVLRARLLDRVQQEHQQKIASTRKSMV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
G+GDRSERIRTYNFPQ RVTDHRVG+T H + +++G +LD ID L+L+
Sbjct: 297 GTGDRSERIRTYNFPQNRVTDHRVGLTLHRLDSVLDG-DLDEIIDTLILK 345
>gi|423711001|ref|ZP_17685321.1| peptide chain release factor 1 [Bartonella washoensis Sb944nv]
gi|395414915|gb|EJF81350.1| peptide chain release factor 1 [Bartonella washoensis Sb944nv]
Length = 359
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/348 (48%), Positives = 245/348 (70%), Gaps = 5/348 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L +
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAENPNAET--YVKLASEYAELQPIVSSIRTLNALYVD 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETIINDKLTDVEMRNLAQEELPLLWQKIEQLEQELQILLLPKDVADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV ++E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANTHNWKVEVVSLSEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQQAERERSASRKNQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +L+ I AL+
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRILEG-DLNELIHALI 344
>gi|222529063|ref|YP_002572945.1| peptide chain release factor 1 [Caldicellulosiruptor bescii DSM
6725]
gi|312622681|ref|YP_004024294.1| peptide chain release factor 1 [Caldicellulosiruptor kronotskyensis
2002]
gi|254790859|sp|B9MR68.1|RF1_ANATD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|222455910|gb|ACM60172.1| peptide chain release factor 1 [Caldicellulosiruptor bescii DSM
6725]
gi|312203148|gb|ADQ46475.1| peptide chain release factor 1 [Caldicellulosiruptor kronotskyensis
2002]
Length = 355
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/359 (45%), Positives = 244/359 (67%), Gaps = 8/359 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE ++ PE + P E+ K KE L+ ++ + R ++ +D
Sbjct: 1 MIEKLQVIEEKYLELEKKISDPEIISQPQEWQKLMKEHSNLQP---IVEKFREYKRILDT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+ H PTG+ ++ QDERSQH N+ +A+K+L A+LY+ +S R Q+G
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSIQQKEIESQRRSQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+GDRSERIRTYNFPQGRVTDHR+G+T + + +++GE LD IDAL+ + + + G
Sbjct: 298 TGDRSERIRTYNFPQGRVTDHRIGLTLYKLEQILDGE-LDEIIDALITHFQTERLKEIG 355
>gi|440228048|ref|YP_007335139.1| peptide chain release factor [Rhizobium tropici CIAT 899]
gi|440039559|gb|AGB72593.1| peptide chain release factor [Rhizobium tropici CIAT 899]
Length = 359
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/361 (47%), Positives = 246/361 (68%), Gaps = 7/361 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I +
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRDYERALA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E L++++ + S D++M D+A EL + + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 EAADLEAMLSDKSVDREMRDLAEMELPEVKERIEALEKDIQVELLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ GWK EV+ ++ + G+KE A ISG GV+ +LK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFAASNGWKVEVLSASDGEAGGFKEIIATISGKGVFSRLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++L++MER R RS R Q
Sbjct: 238 NTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLFDMERQRADSERSADRKSQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MM GE +D +DALL + +A
Sbjct: 297 VGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMIGE-IDEVVDALLADYQASQLAQL 355
Query: 419 G 419
G
Sbjct: 356 G 356
>gi|88606704|ref|YP_505023.1| peptide chain release factor 1 [Anaplasma phagocytophilum HZ]
gi|119361507|sp|Q2GKS8.1|RF1_ANAPZ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|88597767|gb|ABD43237.1| peptide chain release factor 1 [Anaplasma phagocytophilum HZ]
Length = 359
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/312 (51%), Positives = 225/312 (72%)
Query: 96 ANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQ 155
A++E L M LI + ++ QKEI L+ L+ S D ++ +A +E + +L+
Sbjct: 35 ASREYSDLLPIMSLIEKYKSTQKEIAELEELVNSASTDPELRSLAKDESHIKQKLLPKLR 94
Query: 156 SLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTE 215
L SLLPKD D R+ ILE+RAGTGGEEA+LF ++++MY +Y+++K WK E + ++
Sbjct: 95 HELQLSLLPKDRDDSRNAILEIRAGTGGEEAALFVGNLYRMYLKYAERKNWKVETINIST 154
Query: 216 SDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD 275
+ + GYKEAS +I G V+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+ +EVD
Sbjct: 155 TGIGGYKEASFSIGGKDVFARLKFESGVHRVQRVPETESSGRLHTSAATVAVLPEVEEVD 214
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ + QDE+SQH NK+KALKVL
Sbjct: 215 LKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVIQQDEKSQHKNKSKALKVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+LY +E+ + SK+R QIGSGDRSERIRTYNF Q R+TDHR+ +T + + +M+
Sbjct: 275 RARLYNLEKQKREEEISKMRKSQIGSGDRSERIRTYNFLQSRITDHRINLTSYRLDYVMK 334
Query: 396 GENLDIFIDALL 407
+LD FIDAL+
Sbjct: 335 EGDLDEFIDALV 346
>gi|357031644|ref|ZP_09093587.1| peptide chain release factor 1 [Gluconobacter morbifer G707]
gi|356414874|gb|EHH68518.1| peptide chain release factor 1 [Gluconobacter morbifer G707]
Length = 353
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 241/353 (68%), Gaps = 8/353 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A RS ++ L+ + + E++ ++E +L + I + +K G SL
Sbjct: 8 ERIVA---RSEEIQALMASGDIAGEEFTALSREYAELEPVVTSIRAWQEAEKARKGALSL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ ED +M ++A EL RLQ L +LLP+D ADER ILEVR GG+EA
Sbjct: 65 L----EDPEMRELAQAELDEVNASLPRLQHDLRLALLPRDAADERSAILEVRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA ++F Y R++++ GW+FEV+ E+++ G KE A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAELFDAYRRFAEQNGWRFEVMEYAENEVAGLKEGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ +++Q+E+SQH N+AKA+K+L A+LYE +RS H SR+ R Q+G+GDRSE
Sbjct: 241 ITHLPTGVVVAMQEEKSQHKNRAKAMKILRARLYERQRSAAHESRAADRKSQVGTGDRSE 300
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RIRTYNFPQGRVTDHR+ +T + I +M GE D IDAL +++ +A+ G
Sbjct: 301 RIRTYNFPQGRVTDHRINLTLYKIDRVMAGE-FDEIIDALTQEEQTALLAAEG 352
>gi|384213954|ref|YP_005605117.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 6]
gi|354952850|dbj|BAL05529.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 6]
Length = 361
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 159/317 (50%), Positives = 223/317 (70%), Gaps = 6/317 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL +L + + R+ KE+ +LI + + D +M MA +EL I+
Sbjct: 32 YVQITRELAELAPLIEAVKAYRSAVKELADTAALIGDPATDAEMRGMAEAERDELTPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 E---LVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A I G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP
Sbjct: 149 VISASEGTVGGYKEIIAEIQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
+ ++VDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A
Sbjct: 209 EVEDVDVEIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRA 268
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
A+ +L +++Y+ ER R+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T +
Sbjct: 269 SAMNILRSRIYDAERQRVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYK 328
Query: 390 ISDMMEGENLDIFIDAL 406
+ ++ GE L DAL
Sbjct: 329 LPQVIAGEALGELTDAL 345
>gi|330813117|ref|YP_004357356.1| peptide chain release factor 1 [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486212|gb|AEA80617.1| peptide chain release factor 1 [Candidatus Pelagibacter sp.
IMCC9063]
Length = 357
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 164/345 (47%), Positives = 236/345 (68%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+++ +I R LE+ +++ + E+ K +KE + + + I K+ + LK +
Sbjct: 5 EKLESIVNRYNDLESSLSKTDIDKKEFVKNSKEYSSIGEIIETIKSYIDAIKDKEDLKKI 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ + D ++ +MA +L +E+ + + LLPKD+ADE++ I+E+RAGTGG EA
Sbjct: 65 LSDKDSDIEIREMAEHDLEEIKSKEQEYEKKVKVFLLPKDEADEKNAIVEIRAGTGGLEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
SLFA D+F MY++ S GW+ EV+ V+ S+ GYKE I+G V+ KLKFESG+HRV
Sbjct: 125 SLFASDLFNMYQKVSSINGWRVEVLSVSASEAGGYKEIVFTITGKNVFSKLKFESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GRVHTSA +VA+L +A+EVDV++ DLRID +RSGG GGQ NTT+SAVR
Sbjct: 185 QRVPDTETQGRVHTSAATVAVLAEAEEVDVKIDENDLRIDVFRSGGPGGQSVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+THIPTG+ ++IQDE+SQH NKAKA+ +L ++LYE ER R+ RS R QIG+GDRSE
Sbjct: 245 ITHIPTGVVVAIQDEKSQHKNKAKAMTILRSRLYEAERLRLENERSVARKSQIGTGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
RIRTYNFPQGRV+DHR+ +T H ++ + G++ DAL ++ +
Sbjct: 305 RIRTYNFPQGRVSDHRINLTLHKLTGFLAGDDFAEMSDALQIKHQ 349
>gi|421596648|ref|ZP_16040424.1| peptide chain release factor 1 [Bradyrhizobium sp. CCGE-LA001]
gi|404271243|gb|EJZ35147.1| peptide chain release factor 1 [Bradyrhizobium sp. CCGE-LA001]
Length = 361
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 157/317 (49%), Positives = 225/317 (70%), Gaps = 6/317 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL ++ + L+ R+ KE+ ++LI + + D +M MA +EL I+
Sbjct: 32 YVQITRELAEITPLIELVKAYRSAVKELADTEALIADPATDPEMRSMAEAERDELAPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 E---LVQQIRVALLPKDAMDDRNVMLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP
Sbjct: 149 VISASEGTVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
+ ++V+V ++ EDLRI+T R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH N+A
Sbjct: 209 EVEDVEVDIKTEDLRIETMRAQGAGGQHVNKTESAIRITHMPTGIVVMMQDSRSQHKNRA 268
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
A+ +L +++Y+ ER R+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T +
Sbjct: 269 SAMNILRSRIYDAERQRVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYK 328
Query: 390 ISDMMEGENLDIFIDAL 406
+ ++ GE L IDAL
Sbjct: 329 LPQVIAGEALGELIDAL 345
>gi|296445919|ref|ZP_06887870.1| peptide chain release factor 1 [Methylosinus trichosporium OB3b]
gi|296256587|gb|EFH03663.1| peptide chain release factor 1 [Methylosinus trichosporium OB3b]
Length = 356
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 168/337 (49%), Positives = 230/337 (68%), Gaps = 3/337 (0%)
Query: 70 LAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
L + R L P+A A + ++EL L D + I R EI GL ++ +
Sbjct: 9 LILRRHDEIGARLAAGPDA--ASFVALSRELATLDDVVARIRTWRATSAEIAGLGEMLAD 66
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+ + +M EL A + L +LLPKD ADE+ ILEVRAGTGG+EA+LF
Sbjct: 67 PALEPEMRAFVEGELDAAESALASAEQELKLALLPKDSADEKGVILEVRAGTGGDEAALF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+ Y++Y+ KGW E++ +E L GYKE A ISG GVY +LKFESG+HRVQRV
Sbjct: 127 AGDLFRAYQKYAGVKGWGVEILSASEGALGGYKEIVAEISGRGVYARLKFESGVHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSA +VA+LPQA+EVDV + ++DL+I+T RSGG+GGQH N T SA+R+TH
Sbjct: 187 PATETQGRIHTSAATVAVLPQAEEVDVAIDDKDLQIETMRSGGAGGQHVNKTESAIRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+P+G+ + +Q+ERSQH N+AKA++VL ++L++ ER R+ +R+ R Q+GSGDRSERIR
Sbjct: 247 LPSGIVVMMQEERSQHRNRAKAMEVLRSRLFDAERQRLDSARAADRKAQVGSGDRSERIR 306
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
TYNFPQGRVTDHR+ +T + + ++EGE LD DAL
Sbjct: 307 TYNFPQGRVTDHRINLTLYKLDRVIEGE-LDEIFDAL 342
>gi|297618446|ref|YP_003703605.1| peptide chain release factor 1 [Syntrophothermus lipocalidus DSM
12680]
gi|297146283|gb|ADI03040.1| peptide chain release factor 1 [Syntrophothermus lipocalidus DSM
12680]
Length = 355
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 171/348 (49%), Positives = 242/348 (69%), Gaps = 10/348 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE-----ASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
M +++ +E + + L++QPE A +Y+KA+ EL +L D+ R +Q +
Sbjct: 1 MLEKLDKLEEKFEEITALLSQPEVIADQARFQKYAKAHAELSELVDTYREYK--RVRQDK 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
D L E ED D+ +M EE+ + D+E++L+ L LLPKD DE++ I+E+RA
Sbjct: 59 TDARAML--EEEEDDDLRNMLVEEIRVLSDKEEKLEQRLKLLLLPKDPNDEKNVIMEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+F+MY RY++K+GWK +++ + SDL G+KE + G G Y KLKF
Sbjct: 117 GTGGEEAALFAADLFRMYSRYAEKQGWKVDIMDTSYSDLGGFKEIIFIVEGRGAYSKLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P+TE GR+HTSA +VA+LP+A+EV+V + DLRID + S G GGQ N
Sbjct: 177 ESGVHRVQRIPVTESGGRIHTSAATVAVLPEAEEVEVDINPNDLRIDVFCSSGPGGQSVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT SAVR+TH+PTG+ +S QDE+SQH NK KA++VL ++L E++R+ + R Q+
Sbjct: 237 TTQSAVRITHLPTGIVVSCQDEKSQHKNKDKAMRVLRSRLLELKRAEHEAEIADARRSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQGRVTDHR+ +T H + ++EGE LD I+AL+
Sbjct: 297 GSGDRSERIRTYNFPQGRVTDHRINLTLHKLDVVLEGE-LDEIIEALI 343
>gi|456358592|dbj|BAM93037.1| peptide chain release factor 1 [Agromonas oligotrophica S58]
Length = 361
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 221/314 (70%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R+ KE+ ++LI + + D +M MA E I
Sbjct: 32 YVQITRELAELNPLIEAVKAYRSGVKELADTEALIADAASDAEMRGMAEAERDELIARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ E+ ++ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAEQQKVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDAL 406
++ GE L IDAL
Sbjct: 332 VIAGEALGEMIDAL 345
>gi|399064447|ref|ZP_10747386.1| peptide chain release factor 1 [Novosphingobium sp. AP12]
gi|398030691|gb|EJL24096.1| peptide chain release factor 1 [Novosphingobium sp. AP12]
Length = 356
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 155/326 (47%), Positives = 229/326 (70%), Gaps = 3/326 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ A+++ +L + +++ + + E++ L+ L D +M +A EE+ E
Sbjct: 32 FVAASRDYAELEPVARVAADVASMRGELEVLQKL---EDPDPEMRALAAEEVQRLKTELP 88
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L S+LP+D AD R +LE+RAGTGG+EA+LFA D+++MYERY+ ++GW+ E+V
Sbjct: 89 EAERRLAVSMLPRDAADVRPAMLEIRAGTGGDEAALFAADLYRMYERYAAEQGWRVEMVS 148
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
SD+ G+KE A ++G GV+ KLKFESG+HRVQRVP+TE GR+HTSA +VA+LP+
Sbjct: 149 ANASDVGGFKEVVANVTGSGVFAKLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEPT 208
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV++ ++DL+ID YR+ G+GGQH NTT+SAVR+TH+PT + + QDERSQH NKAKA+
Sbjct: 209 EVDVQIEDKDLKIDIYRASGAGGQHVNTTDSAVRITHLPTNLVVICQDERSQHKNKAKAM 268
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL A+LYE R + ++ R +GSGDRSERIRTYNFPQGRVTDHR+ +T H + +
Sbjct: 269 QVLRARLYEKMRDEAQGAEAEARKAMVGSGDRSERIRTYNFPQGRVTDHRINLTLHRLPE 328
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
++EG L +D+L+ + E +A+
Sbjct: 329 ILEGPGLAELVDSLIAEDEAKRLAAM 354
>gi|389876238|ref|YP_006369803.1| peptide chain release factor RF-1 [Tistrella mobilis KA081020-065]
gi|388527022|gb|AFK52219.1| peptide chain release factor RF-1 [Tistrella mobilis KA081020-065]
Length = 362
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 165/346 (47%), Positives = 233/346 (67%), Gaps = 12/346 (3%)
Query: 82 LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141
L + A +Y + ++E L + + R +E+ + + + + D +M +A
Sbjct: 21 LADPAIAGSGDYVRLSREFAGLDELAQAVRRQREVARELAEARVMAGDPAADAEMRALAE 80
Query: 142 EEL------CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFK 195
EE C A+D R+ LLP+D+AD+R ILE+RAGTGGEEA+LFA D+F+
Sbjct: 81 EECRSLEAECQALDRSVRVM------LLPRDEADDRSAILEIRAGTGGEEAALFAADLFR 134
Query: 196 MYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKS 255
MY+RY+Q+ GW+ ++ TESDL G++E A I G GVYG+LKFESG+HRVQRVP TE
Sbjct: 135 MYQRYAQEAGWRVSLLQATESDLGGFREVVAEIEGAGVYGRLKFESGVHRVQRVPETEAQ 194
Query: 256 GRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
GR+HTSA +VAILP+A+EVD+ + DL+ID +R+ G+GGQH NTT+SAVR+TH+PTG+
Sbjct: 195 GRIHTSAATVAILPEAEEVDIAIDPADLKIDVFRASGAGGQHVNTTDSAVRITHLPTGIV 254
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH N+AKALK+L A+L+E R +R+ R +GSGDRSERIRTYNFPQ
Sbjct: 255 VVQQDERSQHKNRAKALKILRARLFEQARDAAAEARAAERRGLVGSGDRSERIRTYNFPQ 314
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
RVTDHR+G+T + + ++ GE L I+AL+ + + +A+ T
Sbjct: 315 NRVTDHRIGLTLYKLDKVVAGEALGELIEALVTEDQAARLAALDET 360
>gi|297181249|gb|ADI17443.1| protein chain release factor a [uncultured Rhodospirillales
bacterium HF0070_31K06]
Length = 357
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 164/350 (46%), Positives = 247/350 (70%), Gaps = 1/350 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ +ME R+ ++ R A L L+ + +Y+ +KE +L + EL++ ++E+
Sbjct: 1 MSVME-RLDSVISRHAELAALMASGDLDAGQYADYSKEYAELSPVVEKAQELKSLREELG 59
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
GL+ L+ + D +M ++A E D+ ++ L LLPKD ADE+ ILE+RAGT
Sbjct: 60 GLEELLADPETDSEMKELAEAERQELRDQVPDIEESLRILLLPKDAADEKSAILEIRAGT 119
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+ +MY+RY++ GW+ E + ++E++L G KEA+ +I+G GV+ +LKFES
Sbjct: 120 GGDEAALFASDLMRMYQRYAEMHGWRTEFLDLSETELGGVKEAALSIAGRGVFARLKFES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP T+ GR+HTSA +VA+LP+A+EVD+++ DLR+DTYR+ G+GGQH N T
Sbjct: 180 GVHRVQRVPTTDSGGRIHTSAATVAVLPEAEEVDIQIDTSDLRVDTYRASGAGGQHVNKT 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SA+R+TH+PTG+ + QDE+SQH N+AKA+KVL A+LY+ ER + R+ R Q+GS
Sbjct: 240 DSAIRITHLPTGIVVQCQDEKSQHKNRAKAMKVLRARLYDHERQTLDAERAADRKTQVGS 299
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
GDRSERIRTYNFPQGRVTDHR+ +T H + ++ G+ LD +D L+ + +
Sbjct: 300 GDRSERIRTYNFPQGRVTDHRINLTLHKLDRILAGDELDEVVDLLIAEDQ 349
>gi|23012458|ref|ZP_00052537.1| COG0216: Protein chain release factor A [Magnetospirillum
magnetotacticum MS-1]
Length = 361
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 158/323 (48%), Positives = 227/323 (70%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++EL +L + I R + + G+++LI E D +M +A EE A + ++
Sbjct: 37 SRELSELDGVVAAIHAYRAAEANLAGIRALIDEPGGDPEMRALAAEEKPDAEEALEQAHR 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD ADE+ ILE+RAGTGG+EA+LFA D+F+MY +Y++ KGW+ EV+ +E
Sbjct: 97 ALQLMLLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GY+E A + G V+ +LKFESG HRVQRVP TE GR+HTSA +VA+LP+A+EVDV
Sbjct: 157 TVGGYREVVAEVKGRSVFSRLKFESGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDV 216
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLC 336
+ DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +Q+ERSQH N+A+A+ +L
Sbjct: 217 VINEADLKIDTMRAQGAGGQHVNKTESAIRITHLPTGVVVFVQEERSQHKNRARAMALLR 276
Query: 337 AKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEG 396
A+L++ ERS +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++M G
Sbjct: 277 ARLFDAERSAKDSARAADRKAQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAG 336
Query: 397 ENLDIFIDALLLQQEMDAIASFG 419
LD IDAL+ + + + +A+ G
Sbjct: 337 PALDEVIDALVTEHQAELLAAEG 359
>gi|367472871|ref|ZP_09472444.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 285]
gi|365274841|emb|CCD84912.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 285]
Length = 361
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 155/314 (49%), Positives = 219/314 (69%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + D +M MA E I
Sbjct: 32 YVQITRELAELNPLIEAVKAYRAGVKELADTEALIADPETDAEMRAMAETERDELIARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVIA 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ ER ++ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAERQKVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDAL 406
++ GE L IDAL
Sbjct: 332 VIAGEALGELIDAL 345
>gi|349686191|ref|ZP_08897333.1| peptide chain release factor 1 [Gluconacetobacter oboediens 174Bp2]
Length = 353
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 161/330 (48%), Positives = 236/330 (71%), Gaps = 7/330 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRT-KQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
S A++S+A++E +L + +S LRT +Q E D + L D ++ ++A EL
Sbjct: 27 SGADFSQASREYAELEPIVARVSALRTAEQAEHDATQMLA-----DPELKELAEAELETL 81
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L+ + ++LP+D+ADER ILE+R GG+EA LFA ++F Y+RY+ ++GW+
Sbjct: 82 RRQIPELRHDIRLAMLPRDEADERSAILEIRPAAGGDEAGLFAAELFGAYQRYADQRGWR 141
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
FEV+ +S+L G +E A+I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+
Sbjct: 142 FEVLEYDQSELGGLREGIASITGRGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAV 201
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+A+EVDV + DLRID YR+ G+GGQH N T SAVR+TH+PT + +++Q+E+SQH N
Sbjct: 202 LPEAEEVDVEVNETDLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVAMQEEKSQHKN 261
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
+AKA+K+L A+LYE R+ H +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+G+T
Sbjct: 262 RAKAMKILRARLYERNRAAAHETRAADRRAQVGTGDRSERIRTYNFPQGRVTDHRIGLTL 321
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+ I +M GE LD F+DAL +++ +A+
Sbjct: 322 YKIDRVMAGE-LDEFVDALTQEEQAALLAA 350
>gi|431805626|ref|YP_007232527.1| peptide chain release factor 1 [Liberibacter crescens BT-1]
gi|430799601|gb|AGA64272.1| Peptide chain release factor 1 [Liberibacter crescens BT-1]
Length = 357
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 164/327 (50%), Positives = 233/327 (71%), Gaps = 2/327 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY K N E ++ + I K++E L S++ + + D+++ ++ ELC ++
Sbjct: 31 EYIKLNSEYVNIKPIVEKIDSYDQKKEEEKNLLSVLSDQNIDQELKELVEIELCEIEKQK 90
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ + LLPKD +E+ ILE+R+GTGG EA+LF D+F+MYERYS + WK E++
Sbjct: 91 EILENEIKYLLLPKDADNEKSSILEIRSGTGGLEAALFVGDLFRMYERYSSLRKWKVELL 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E D GYKE AAISG GV+ +LKFESG+HRVQRVP+TE SGRVHTSA +VA+LP+A
Sbjct: 151 SASEGDAGGYKEIIAAISGQGVFSRLKFESGVHRVQRVPMTEASGRVHTSAATVAVLPEA 210
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+VD+ + ED+RIDT RS G+GGQH NTT+SAVR+THIP+G+ ++ E+SQH N+ +A
Sbjct: 211 KDVDIDIAPEDIRIDTMRSSGAGGQHVNTTDSAVRITHIPSGIVVT-SSEKSQHQNRLQA 269
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+KVL A+LY++ER R+ RS R Q+GSGDRSERIRTYNF QGRVTDHR+ +T + +
Sbjct: 270 MKVLRARLYDIERRRLESERSAKRKAQVGSGDRSERIRTYNFSQGRVTDHRINLTLYKLD 329
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASF 418
M+EG ++D IDALL + + + + S
Sbjct: 330 RMLEG-DIDEMIDALLAEHQAEILVSL 355
>gi|297180848|gb|ADI17053.1| protein chain release factor a [uncultured alpha proteobacterium
HF0010_30A23]
Length = 358
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 238/344 (69%), Gaps = 14/344 (4%)
Query: 82 LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL--IYECSEDKDMLDM 139
L + PE A+Y+K +E ++ ++ E+R QK + L+ + +D DM M
Sbjct: 22 LADHPEPGSADYTKLTREYAEMNP---IVEEMRAFQKSVQDLEDARALAASEDDADMRAM 78
Query: 140 ATEE---LCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFK 195
A +E L ID E+R++ LLL P+D+AD R+ ILE+R GTGG+EA LFA D+
Sbjct: 79 AEDEARELQAEIDATEQRMKVLLL----PRDEADSRNAILEIRPGTGGDEAGLFAGDLLA 134
Query: 196 MYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKS 255
MY RY++ +GWKFE++ ++E+D+ G KE SA I+G V+ LKFESG+HRVQRVP+TE
Sbjct: 135 MYRRYAELQGWKFEILEMSENDVGGLKEVSAKINGTNVFAALKFESGVHRVQRVPMTESG 194
Query: 256 GRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
GR+HTSA +VA+LP+A++VD+ ++ ED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+
Sbjct: 195 GRIHTSAATVAVLPEAEDVDIEIKAEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGII 254
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
++ Q ++SQH N+ +A++VL A+LYE R + R+ R Q+GSGDRSERIRTYN+PQ
Sbjct: 255 VT-QSQKSQHRNREEAMRVLRARLYEKAREEANAERAANRKGQVGSGDRSERIRTYNYPQ 313
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GRV+DHR+ +T H + ++ G+ L I+AL + + +A G
Sbjct: 314 GRVSDHRINLTLHKLDRIVAGDGLGEVIEALTAEDQAARLAELG 357
>gi|325186400|emb|CCA20906.1| peptide chain release factor 1 putative [Albugo laibachii Nc14]
Length = 397
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/350 (47%), Positives = 240/350 (68%), Gaps = 7/350 (2%)
Query: 70 LAIERRSACLENLVNQPEASPAEYSKANK--ELRKLRDSMHLISELRTKQKEIDGLKSLI 127
L +ER + E L + P+ + + N EL +L + I +L++ + ID L ++
Sbjct: 42 LLLERHKSLSEQLYS-PQGKMSSFVLKNLSIELAELTPKVTTIQKLQSTLQTIDELSEIL 100
Query: 128 YECS--EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
S DK+++ +A EEL A ++ L+ L + LLP+D AD+++CILE+RAGTGGEE
Sbjct: 101 ASPSSQNDKELIQLAKEELQEAKEDAIALEKSLTRQLLPRDPADDKNCILEIRAGTGGEE 160
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A LFA D+ K+Y++ + + W F+++ ++ +DL G KE I G GVYG+ KFESG+HR
Sbjct: 161 ACLFANDLLKLYQKIAIMRNWHFQILSISHTDLGGCKECVCTIQGRGVYGQTKFESGVHR 220
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+ + RVHTSAVSV +LP+ +E+++ L ++LRID YR+ GSGGQH NTT SAV
Sbjct: 221 VQRVPINDV--RVHTSAVSVVVLPEIEEIEMELNPKELRIDVYRASGSGGQHVNTTESAV 278
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+THIPTG+ ++QDERSQH NKAKA+ +L A++Y+ R + R +LRS QIGSGDRS
Sbjct: 279 RITHIPTGIQAAVQDERSQHQNKAKAMSILRARVYDQMRDQRDSKRHQLRSLQIGSGDRS 338
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
ERIRTYNFPQ RV+DHRV +T + I + GE +D +DAL+L ++ + +
Sbjct: 339 ERIRTYNFPQSRVSDHRVNVTLYGIERFLNGELMDPLVDALVLDEQNNML 388
>gi|145348023|ref|XP_001418457.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578686|gb|ABO96750.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 373
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/346 (50%), Positives = 241/346 (69%), Gaps = 5/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLR---DSMHLISELRTKQKEID 121
+E+R A RR L L+++ +ANKEL ++ + ++ +LR ++ ++
Sbjct: 17 LEERGEAALRRREELIALISRQGVDIDRVVEANKELSRIEPIAEQYEVVKKLRAEKASLE 76
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSL-LPKDDADERDCILEVRAG 180
L + K++ ++A EEL A+D + Q L L+ L LP DDAD+R ILEVRAG
Sbjct: 77 ELVRDASSGGDSKELAELAREELR-AVDIDLPDQELALQLLFLPHDDADDRGAILEVRAG 135
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GG+EA+LFA ++F+MY +++K GW+F+ + V+E+D +G +EASA I G GV+G+LKFE
Sbjct: 136 AGGDEAALFAAELFRMYALHARKSGWRFDTLNVSETDGKGVREASAEILGKGVFGRLKFE 195
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GRVHTS S+A+LP A+EV++ ++ ED+RIDT R+ G+GGQH NT
Sbjct: 196 SGVHRVQRVPETETQGRVHTSTASIAVLPHAEEVEMDIKEEDVRIDTMRASGAGGQHVNT 255
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
TNSAVR+TH PTG+ + IQDERSQH NKAKA VL A+LY++ER ++ RS+LRS IG
Sbjct: 256 TNSAVRLTHAPTGIQVVIQDERSQHKNKAKAFSVLKARLYDLEREKMAKERSELRSSLIG 315
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
+GDRSERIRTYNF QGRV DHRV T ++ +M+G LD + L
Sbjct: 316 TGDRSERIRTYNFAQGRVKDHRVEGTISDVNALMDGFLLDEITEKL 361
>gi|312793258|ref|YP_004026181.1| peptide chain release factor 1 [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180398|gb|ADQ40568.1| peptide chain release factor 1 [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 355
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/359 (45%), Positives = 243/359 (67%), Gaps = 8/359 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + PE + P E+ K KE L+ ++ + R ++ ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQPQEWQKLMKEHSNLQP---IVEKFREYKRILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNQAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+ H PTG+ ++ QDERSQH N+ +A+K+L A+LY+ +S R Q+G
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSIQQKEIESQRRSQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+GDRSERIRTYNFPQGRVTDHR+G+T + + +++GE LD IDAL+ + + + G
Sbjct: 298 TGDRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGE-LDEIIDALITHFQTERLKEVG 355
>gi|148284270|ref|YP_001248360.1| peptide chain release factor 1 [Orientia tsutsugamushi str.
Boryong]
gi|166223581|sp|A5CCS8.1|RF1_ORITB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|146739709|emb|CAM79522.1| peptide chain release factor [Orientia tsutsugamushi str. Boryong]
Length = 359
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 158/338 (46%), Positives = 241/338 (71%), Gaps = 1/338 (0%)
Query: 79 LENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
LE +N + E + +KE L+ + ++ + I L+ +I + +D ++
Sbjct: 17 LEADLNGGKLDNKELALISKEYSNLKPIIEKLNRYLKAHENIKYLQQVI-DTEQDLELKS 75
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
+A EL ++ +L+ + SLLPK+ D ++ I+EVRAGTGG+EA+LFA +F+MY
Sbjct: 76 IAEVELYDTLNYLPKLEEEVKISLLPKESDDHKNAIIEVRAGTGGDEAALFAASLFQMYN 135
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
+Y+++K WKFE++ ++++++ G KEASA ISG GV+ LKFESG+HRVQR+P TE +GR+
Sbjct: 136 KYAERKKWKFELLSISDTEIGGCKEASALISGNGVFANLKFESGVHRVQRIPKTESNGRI 195
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +V +LP+A+EVDV++ +DL+IDTYR+ G+GGQH NTT+SAVR+THIPTG+ +S
Sbjct: 196 HTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVSQ 255
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QDE+SQH NKAKA+K+L A+LY++E+ + ++ R Q+G+GDRSERIRTYN+PQGRV
Sbjct: 256 QDEKSQHKNKAKAMKILYARLYDLEKQKSKQEQAISRKVQVGTGDRSERIRTYNYPQGRV 315
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
TDHR+ +T + I ++++ LD I+ L+ + E IA
Sbjct: 316 TDHRINLTLYKIEEIIQEGKLDEIINNLISENEAKKIA 353
>gi|220920161|ref|YP_002495462.1| peptide chain release factor 1 [Methylobacterium nodulans ORS 2060]
gi|254790889|sp|B8IUB4.1|RF1_METNO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219944767|gb|ACL55159.1| peptide chain release factor 1 [Methylobacterium nodulans ORS 2060]
Length = 359
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/359 (46%), Positives = 237/359 (66%), Gaps = 2/359 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I I R+ AI R + ++ EA + + ++EL L D + I R E+
Sbjct: 1 MIAIPSDRLDAILARHDIVTATLSAGEADSESFVQLSRELSDLDDVVAAIRAYRAADAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
G+++++ E D +M +A EE L LLPKD ADE+ ILE+RAG
Sbjct: 61 RGVEAMLEEG--DPEMRALAAEEKPEVEAARDAAAKALQILLLPKDSADEKSAILEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY RY+ KGWK EVV + + GY+E A + G GV+ +LKFE
Sbjct: 119 TGGDEAALFAGDLFRMYARYADLKGWKVEVVSESPGTMGGYREVVAEVKGRGVFARLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + DL+IDT R+ G+GGQH N
Sbjct: 179 SGAHRVQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNK 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SA+R+TH+P+G+ + +Q+ERSQH N+A+A+ VL A+LYE ERS+ +R+ R Q+G
Sbjct: 239 TESAIRITHMPSGIVVFVQEERSQHKNRARAMAVLRARLYEQERSQKDAARAADRRAQVG 298
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SGDRSERIRTYNFPQGRVTDHR+ +T + + +++ G LD +DAL+ + + +A+ G
Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVLAGTALDELVDALVTEHQAALLAAEG 357
>gi|170742857|ref|YP_001771512.1| peptide chain release factor 1 [Methylobacterium sp. 4-46]
gi|226739116|sp|B0UAV4.1|RF1_METS4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|168197131|gb|ACA19078.1| peptide chain release factor 1 [Methylobacterium sp. 4-46]
Length = 359
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/359 (46%), Positives = 237/359 (66%), Gaps = 2/359 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I I R+ AI R + ++ EA + + ++EL L D + I R + E+
Sbjct: 1 MIAIPSDRLDAILARHDIVTATLSAGEADSESFVQLSRELSDLDDVVAAIRAYRAAEAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
G+++++ E D +M +A EE L LLPKD ADE+ ILE+RAG
Sbjct: 61 RGVEAMLQEG--DPEMRALAAEEKPEVEAARDAAAKALQIMLLPKDAADEKSAILEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+ +MY RY+ KGWK EVV + + GY+E A + G GV+ +LKFE
Sbjct: 119 TGGDEAALFAGDLLRMYARYADLKGWKIEVVSESPGTMGGYREVVAEVKGRGVFARLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + DL+IDT R+ G+GGQH N
Sbjct: 179 SGAHRVQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNK 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SA+R+THIP+G+ + +Q+ERSQH N+A+A+ VL A+LYE ERS+ +R+ R Q+G
Sbjct: 239 TESAIRITHIPSGIVVFVQEERSQHKNRARAMAVLRARLYEQERSQKDAARAADRRAQVG 298
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SGDRSERIRTYNFPQGRVTDHR+ +T + + +++ G LD +DAL+ + + +A+ G
Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVLAGTALDELVDALVTEHQAALLAAEG 357
>gi|374294759|ref|YP_005044950.1| peptide chain release factor 1 (bRF-1) [Clostridium clariflavum DSM
19732]
gi|359824253|gb|AEV67026.1| bacterial peptide chain release factor 1 (bRF-1) [Clostridium
clariflavum DSM 19732]
Length = 360
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 245/358 (68%), Gaps = 4/358 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P + EY K KE +L++ ++ E + K+I
Sbjct: 1 MFDKLQAAENRYEEINHKLSDPTVIENQDEYRKLMKEHAELQELVNKYGEYKKLTKDIAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ E DKD DM EL A + +R++ + LLPKD DE++ I+E+R G G
Sbjct: 61 AKELLNE-KLDKDFRDMVELELKEAEESLERIKKEIKILLLPKDPNDEKNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EASLFA D+F+MY +Y++K GWK E++ +++ G+KE AI G G Y KLKFESG
Sbjct: 120 GDEASLFAGDLFRMYTKYAEKCGWKTEILDSNPNEIGGFKEVIFAIEGNGAYSKLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE +GR+HTS V+VA+LP+ +EVDV + DL+IDT+R+ G+GGQH N T
Sbjct: 180 VHRVQRIPETEANGRIHTSTVTVAVLPEVEEVDVEINPNDLKIDTFRASGAGGQHINKTE 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SA+R+THIPTG+ ++ QD+RSQH NK KA+++L +KLYEM + + + ++ R Q+G+G
Sbjct: 240 SAIRITHIPTGIVVTCQDQRSQHKNKDKAMRILRSKLYEMAQEQQNSEIAQARKTQVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
DRSERIRTYN+PQGRVTDHR+G+T + I ++EG +LD IDAL+ + + +AS G+
Sbjct: 300 DRSERIRTYNYPQGRVTDHRIGLTLYKIDSILEG-DLDEIIDALITTSQAERLASGGN 356
>gi|344995777|ref|YP_004798120.1| peptide chain release factor 1 [Caldicellulosiruptor lactoaceticus
6A]
gi|343963996|gb|AEM73143.1| Peptide chain release factor 1 [Caldicellulosiruptor lactoaceticus
6A]
Length = 355
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 163/359 (45%), Positives = 243/359 (67%), Gaps = 8/359 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + PE + P E+ K KE L+ ++ + R ++ ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQPQEWQKLMKEHSNLQP---IVEKFREYKRILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNHAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+ H PTG+ ++ QDERSQH N+ +A+K+L A+LY+ +S R Q+G
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSIQQKEIESQRRSQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+GDRSERIRTYNFPQGRVTDHR+G+T + + +++GE LD IDAL+ + + + G
Sbjct: 298 TGDRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGE-LDEIIDALITHFQTERLKEVG 355
>gi|365879438|ref|ZP_09418861.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 375]
gi|365292622|emb|CCD91392.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 375]
Length = 361
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 219/314 (69%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + D +M MA E +
Sbjct: 32 YVQITRELAELNPLIDAVKAYRAGVKELADTEALIADPDTDAEMRAMAEAERDELVARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ ER ++ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAERQKVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDAL 406
++ GE L IDAL
Sbjct: 332 VIAGEALGELIDAL 345
>gi|365887823|ref|ZP_09426640.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3809]
gi|365336576|emb|CCD99171.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3809]
Length = 361
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 219/314 (69%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + D +M MA E +
Sbjct: 32 YVQITRELAELNPLIDAVKAYRAGVKELADTEALIADPDTDAEMRAMAEAERDELVARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ ER ++ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAERQKVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDAL 406
++ GE L IDAL
Sbjct: 332 VIAGEALGELIDAL 345
>gi|296116158|ref|ZP_06834776.1| peptide chain release factor 1 [Gluconacetobacter hansenii ATCC
23769]
gi|295977264|gb|EFG84024.1| peptide chain release factor 1 [Gluconacetobacter hansenii ATCC
23769]
Length = 353
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 157/327 (48%), Positives = 234/327 (71%), Gaps = 6/327 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
S A +S+A++E +L + ++ LR ++ + ++L+ +D +M +A EL
Sbjct: 27 SGAAFSQASREFAELDPIVAKVNALRATEQAVQDTQALL----DDPEMRGLAESELAELR 82
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
L+ + ++LP+D+AD+R ILE+R GG+EA+LFA +F Y+RY+ ++GW+F
Sbjct: 83 RRIPELEHDIRIAMLPRDEADDRSAILEIRPAAGGDEAALFAGQMFGAYQRYADQRGWRF 142
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
E++ ES+L G +E A+I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+L
Sbjct: 143 EILEYDESELGGLREGIASITGRGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVL 202
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
P+A+EVDV + + DLRID YR+ G+GGQH N T SAVR+TH+P+G+ +++Q+E+SQH N+
Sbjct: 203 PEAEEVDVEINDNDLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVAMQEEKSQHKNR 262
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
AKA+K+L A+LYE R+ H +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+G+T +
Sbjct: 263 AKAMKILRARLYERNRAAAHETRAADRRSQVGTGDRSERIRTYNFPQGRVTDHRIGLTLY 322
Query: 389 AISDMMEGENLDIFIDALLLQQEMDAI 415
I +M GE D F+DA L Q+E A+
Sbjct: 323 KIDKVMGGE-FDEFVDA-LTQEEQAAL 347
>gi|349700134|ref|ZP_08901763.1| peptide chain release factor 1 [Gluconacetobacter europaeus LMG
18494]
Length = 353
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 159/330 (48%), Positives = 235/330 (71%), Gaps = 7/330 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRT-KQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
S A++S+A++E +L + ++ LRT +Q E D + L D ++ ++A EL
Sbjct: 27 SGADFSQASREYAELEPIVTRVNALRTAEQAEQDATQMLA-----DPELRELAQAELDTL 81
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L+ + ++LP+D+ADER ILE+R GG+EA LFA ++F Y+RY+ ++GW+
Sbjct: 82 HTQIPELRHDIRLAMLPRDEADERSAILEIRPAAGGDEAGLFAAELFGAYQRYADQRGWR 141
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
FEV+ +S+L G +E A+I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+
Sbjct: 142 FEVLEYDQSELGGLREGIASITGRGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAV 201
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+A+EVDV + DLRID YR+ G+GGQH N T SAVR+TH+PT + +++Q+E+SQH N
Sbjct: 202 LPEAEEVDVEVNEGDLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVAMQEEKSQHKN 261
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
+AKA+K+L A+LYE R+ H +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+G+T
Sbjct: 262 RAKAMKILRARLYERNRAAAHETRAADRRAQVGTGDRSERIRTYNFPQGRVTDHRIGLTL 321
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+ I +M GE D F+DAL +++ +A+
Sbjct: 322 YKIDRVMAGE-FDEFVDALTQEEQAALLAA 350
>gi|297183691|gb|ADI19816.1| protein chain release factor a [uncultured alpha proteobacterium
EB000_37G09]
Length = 357
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/315 (50%), Positives = 222/315 (70%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E +K ++EL ++R + +R + + + +I E D +M +MA E+ +
Sbjct: 31 ELTKLSRELAEVRPVAEQVFVVRHLAQALADARQMIEEEGADPEMAEMAETEISELGPQL 90
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L LLPKD D R+ ILEVRAGTGG+EA+LFA D+F MY+R + + GWKFEV+
Sbjct: 91 TEAEHDLKLLLLPKDTDDSRNAILEVRAGTGGDEAALFAADLFGMYQRTASRYGWKFEVM 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++E+ + GYKEA+A ISG V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 151 EISETGIGGYKEATANISGQDVFARLKFESGVHRVQRVPETETGGRIHTSAATVAVLPEA 210
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+VD+ + DLR+D +R+ G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQH N+AKA
Sbjct: 211 QDVDIEVSESDLRVDVFRASGPGGQSVNTTDSAVRITHLPTGIVVSQQDEKSQHKNRAKA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+K+L A++Y+ ER+R R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ T + +
Sbjct: 271 MKILRARIYDAERARQQAERAASRKGQVGSGDRSERIRTYNFPQGRVTDHRINFTLYKLD 330
Query: 392 DMMEGENLDIFIDAL 406
++ GE +D IDAL
Sbjct: 331 KVLAGEAIDEVIDAL 345
>gi|83859678|ref|ZP_00953198.1| peptide chain release factor 1 [Oceanicaulis sp. HTCC2633]
gi|83852037|gb|EAP89891.1| peptide chain release factor 1 [Oceanicaulis sp. HTCC2633]
Length = 357
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 239/334 (71%), Gaps = 8/334 (2%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A P E K +KE +L+ EL+T ++ + +++I + S D+DM+++A EE
Sbjct: 26 ADPDEIVKLSKEHAELKLVAEKARELKTARESFEEAEAIIEDGS-DRDMVELAEEERQ-- 82
Query: 148 IDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ +KRL L L L+PKD D+ +LE+RAGTGG+EA+LFA D+F+MYERY+
Sbjct: 83 -ELKKRLPGLERELQLLLIPKDRDDDASIMLEIRAGTGGDEAALFAGDLFRMYERYASNH 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
GWK +VV +E+++ GYKE A++SG GV+GK+KFESG+HRVQRVP+TE GR+HTSA +
Sbjct: 142 GWKVDVVEASEAEVGGYKEIVASVSGKGVFGKMKFESGVHRVQRVPVTESGGRIHTSAAT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VA+LP+ + V++ +++ED+RIDT R+ G+GGQH N T SAVR+THIPTG+ + + E+SQ
Sbjct: 202 VAVLPEPENVEIDIKDEDIRIDTMRASGAGGQHVNKTESAVRMTHIPTGIVV-VSSEKSQ 260
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H N+A A++VL A+LYE ER +R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+
Sbjct: 261 HQNRAIAMQVLKARLYEKERREKDEARAAERKGQVGSGDRSERIRTYNFPQGRVSDHRIN 320
Query: 385 ITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+T + + +++ G+ LD IDALL + + +A+
Sbjct: 321 LTLYKLDEILSGDALDEVIDALLSEDQAAKLAAM 354
>gi|146337703|ref|YP_001202751.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 278]
gi|146190509|emb|CAL74508.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 278]
Length = 361
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 153/314 (48%), Positives = 219/314 (69%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + D +M MA E +
Sbjct: 32 YVQITRELAELNPLIDAVKAYRAGVKELADTEALIADPDTDAEMRAMAESERDELVARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRIALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEIE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQHKNRASAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+L +++Y+ ER ++ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 NILRSRIYDAERQKVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQ 331
Query: 393 MMEGENLDIFIDAL 406
++ GE L +DAL
Sbjct: 332 VIAGEALGELVDAL 345
>gi|424845384|ref|ZP_18269995.1| peptide chain release factor 1 [Jonquetella anthropi DSM 22815]
gi|363986822|gb|EHM13652.1| peptide chain release factor 1 [Jonquetella anthropi DSM 22815]
Length = 358
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 170/350 (48%), Positives = 237/350 (67%), Gaps = 16/350 (4%)
Query: 70 LAIERRSACLENLVNQPEA---SPA------EYSKANKELRKLRDSMHLISELRTKQKEI 120
+ I++R A +E + EA PA E K+ L+ + L E R + +
Sbjct: 1 MQIQKRLAEIEQAYREIEAKMGDPAVASNVKEMGVLGKKHADLQPVVELWQEYRQVEAGL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
KSL E SED +M ++A EE A+ + +++ L + LLPKD DE+D I+E+RAG
Sbjct: 61 AEAKSL--EDSEDAEMAELAKEEAASAVKRLEEIEAELHRQLLPKDPNDEKDVIVEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EASLFA D+++MY R+ +++GW+ E+V E+++ GYKE + G G Y KLKFE
Sbjct: 119 TGGDEASLFAADLYRMYSRFVEREGWRSEIVEENETEVGGYKEIVFQVKGAGAYSKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE SGR+HTSA +VA++PQA++V++ +R EDL IDTYRS G+GGQH N
Sbjct: 179 SGVHRVQRVPATEASGRIHTSAATVAVMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNM 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+TH PTG+ ++ QDERSQ N+AKA+ VL A+LY++E + + R IG
Sbjct: 239 TDSAVRITHKPTGLVVTCQDERSQIKNRAKAMMVLRARLYDLELQKKQSEEASTRRGMIG 298
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF--IDALLL 408
SGDRSERIRTYNFPQ RVTDHR+G+T + + M++G DI+ IDAL +
Sbjct: 299 SGDRSERIRTYNFPQNRVTDHRIGLTLYKLDYMLDG---DIYEMIDALTM 345
>gi|218507716|ref|ZP_03505594.1| peptide chain release factor 1 [Rhizobium etli Brasil 5]
Length = 282
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 151/258 (58%), Positives = 200/258 (77%), Gaps = 2/258 (0%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD ADE+ ILE+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GY
Sbjct: 24 LLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGY 83
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE A I+G GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R E
Sbjct: 84 KEIIATITGRGVFAKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPE 143
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
D+RIDT RS G+GGQH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+
Sbjct: 144 DIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYD 202
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
ER R RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE ++
Sbjct: 203 AERQRADSERSADRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEE 261
Query: 402 FIDALLLQQEMDAIASFG 419
+DAL+ + +A G
Sbjct: 262 VVDALMADYQASQLAQLG 279
>gi|260655567|ref|ZP_05861055.1| peptide chain release factor 1 [Jonquetella anthropi E3_33 E1]
gi|260630015|gb|EEX48209.1| peptide chain release factor 1 [Jonquetella anthropi E3_33 E1]
Length = 361
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 170/348 (48%), Positives = 236/348 (67%), Gaps = 16/348 (4%)
Query: 72 IERRSACLENLVNQPEA---SPA------EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
I++R A +E + EA PA E K+ L+ + L E R + +
Sbjct: 6 IQKRLAEIEQAYREIEAKMGDPAVASNVKEMGVLGKKHADLQPVVELWQEYRQVEAGLAE 65
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
KSL E SED +M ++A EE A+ + +++ L + LLPKD DE+D I+E+RAGTG
Sbjct: 66 AKSL--EDSEDAEMAELAKEEAASAVKRLEEIEAELHRQLLPKDPNDEKDVIVEIRAGTG 123
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EASLFA D+++MY R+ +++GW+ E+V E+++ GYKE + G G Y KLKFESG
Sbjct: 124 GDEASLFAADLYRMYSRFVEREGWRSEIVEENETEVGGYKEIVFQVKGAGAYSKLKFESG 183
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSA +VA++PQA++V++ +R EDL IDTYRS G+GGQH N T+
Sbjct: 184 VHRVQRVPATEASGRIHTSAATVAVMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNMTD 243
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH PTG+ ++ QDERSQ N+AKA+ VL A+LY++E + + R IGSG
Sbjct: 244 SAVRITHKPTGLVVTCQDERSQIKNRAKAMMVLRARLYDLELQKKQSEEASTRRGMIGSG 303
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF--IDALLL 408
DRSERIRTYNFPQ RVTDHR+G+T + + M++G DI+ IDAL +
Sbjct: 304 DRSERIRTYNFPQNRVTDHRIGLTLYKLDYMLDG---DIYEMIDALTM 348
>gi|115522190|ref|YP_779101.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisA53]
gi|122298096|sp|Q07VB3.1|RF1_RHOP5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|115516137|gb|ABJ04121.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris BisA53]
Length = 359
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 160/345 (46%), Positives = 229/345 (66%), Gaps = 1/345 (0%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
R A LE + P S Y K +EL +L + + R + EI + SLI + D
Sbjct: 15 RHAALEAQLLGPVNSE-HYVKITRELAELNPLVDAVKAYRQVRDEIGDIDSLIADPDSDP 73
Query: 135 DMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVF 194
++ MA E + E L + +LLPKD D+R+ +LEVRAGTGG+EASLFA D+F
Sbjct: 74 ELRAMAQAEHAALEEHEAELAQQIRIALLPKDAMDDRNVMLEVRAGTGGDEASLFAGDLF 133
Query: 195 KMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEK 254
+MYE+++ +GW EV+ +E G+KE A + G G + KLKFESG+HRVQRVP TE
Sbjct: 134 RMYEKFAALQGWSVEVISASEGAAGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTET 193
Query: 255 SGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGM 314
GR+HTSA +VA++P+ +EVDV ++ +DL+IDT R+ G+GGQH N T SA+R+TH+PTG+
Sbjct: 194 QGRIHTSAATVAVMPEVEEVDVEIKQDDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGI 253
Query: 315 TISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFP 374
+ +QD RSQH N+A A+ +L +++Y+ E+ R+ +RS R E++GSGDRSERIRTYNFP
Sbjct: 254 VVMMQDSRSQHKNRASAMNILRSRIYDAEQQRLDAARSAERKEKVGSGDRSERIRTYNFP 313
Query: 375 QGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
QGRVTDHR+ +T + + ++ GE L +DAL + +A+ G
Sbjct: 314 QGRVTDHRINLTLYKLPQVIAGEALGELVDALTTDYQAAQLAAQG 358
>gi|348679174|gb|EGZ18991.1| hypothetical protein PHYSODRAFT_301424 [Phytophthora sojae]
Length = 325
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 157/317 (49%), Positives = 230/317 (72%), Gaps = 7/317 (2%)
Query: 100 LRKLRDSMHLISELRTKQKEIDGLKSLI--YECSEDKDMLD---MATEELCLAIDEEKRL 154
+ +L + + EL+++Q ++ L +I E S+D D ++ MA +E + RL
Sbjct: 1 MAELEPKVMAVRELQSQQNAVEELDEMIAEQEGSDDPDAVELRQMAKDERRELQESIARL 60
Query: 155 QSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT 214
+ +++ +LP+D+AD++ ILE+RAGTGG+EA LFA D+ KMY++ + KGWKFE++ ++
Sbjct: 61 EGEVVRLMLPRDEADDKSSILEIRAGTGGDEACLFAADILKMYQKVALAKGWKFEIMSIS 120
Query: 215 ESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV 274
E+DL G KE +++G G YG++KFESG+HRVQRVP+ + RVHTSAVSV +LP+A+EV
Sbjct: 121 ETDLGGCKECVCSLTGRGAYGRMKFESGVHRVQRVPVNDV--RVHTSAVSVVVLPEAEEV 178
Query: 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKV 334
+V + +DLRID YR+ G+GGQH NTT SAVR+THIPTG+ ++QDERSQH NKAKALK+
Sbjct: 179 EVEIDPKDLRIDVYRASGAGGQHVNTTESAVRITHIPTGIVAAVQDERSQHQNKAKALKI 238
Query: 335 LCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMM 394
L A++++ R + R +R+ Q+GSGDRSER+RTYNFPQ RV+DHRV +T I M+
Sbjct: 239 LRARVFDGIRRKRDAERQTMRNSQVGSGDRSERVRTYNFPQSRVSDHRVNVTVFGIERML 298
Query: 395 EGENLDIFIDALLLQQE 411
GE LD +DAL++ ++
Sbjct: 299 NGELLDEIVDALVVDEQ 315
>gi|146296536|ref|YP_001180307.1| peptide chain release factor 1 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|166223538|sp|A4XJN1.1|RF1_CALS8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145410112|gb|ABP67116.1| peptide chain release factor 1 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 355
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 242/357 (67%), Gaps = 4/357 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE ++ PE + E+ K KE L+ + E + K I+
Sbjct: 1 MIEKLQVIEEKYLELEKKISDPEIINNNQEWQKLMKEHSNLQPIVEKFREYKRIIKTIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + + D+D + EEL A ++++ ++ L LLPKD DE++ I+E+RAG G
Sbjct: 61 AEELL-DTNLDEDFEKLVKEELNQAKEQKEIVERELKILLLPKDPNDEKNVIMEIRAGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+ESG
Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL I+T+R+GG+GGQH N T
Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIETFRAGGAGGQHVNKTE 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH PTG+ +S QDERSQH N+ +A+K+L A+LY+ +S R Q+G+G
Sbjct: 240 SAVRITHKPTGIVVSCQDERSQHANRDRAMKILRARLYDYYQSLQQKEIESQRRSQVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
DRSERIRTYNFPQGRVTDHR+G+T + + +++G +LD IDAL+ + + + G
Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDG-DLDEIIDALITHFQTERLKEVG 355
>gi|393769853|ref|ZP_10358370.1| peptide chain release factor 1 [Methylobacterium sp. GXF4]
gi|392724675|gb|EIZ82023.1| peptide chain release factor 1 [Methylobacterium sp. GXF4]
Length = 361
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 225/323 (69%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++EL L + I R + L+++I E D +M +A +E A + +
Sbjct: 37 SRELSDLDPVVDAIRTYRAALANLADLEAMIDEPGTDPEMRALAADEKPEAQERLEETHR 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD ADE+ ILEVRAGTGG+EA+LFA D+F+MY +Y++ KGW+ EV+ +E
Sbjct: 97 ALQLMLLPKDAADEKSAILEVRAGTGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G++E A + G GV+ +LKFESG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+
Sbjct: 157 TVGGFREVVAEVKGKGVFARLKFESGAHRVQRVPNTETQGRIHTSAATVAVLPEAEEVDI 216
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLC 336
+ + DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +Q+ERSQH N+A+A+ +L
Sbjct: 217 VVNDADLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVFVQEERSQHKNRARAMALLR 276
Query: 337 AKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEG 396
A+LY+ ER+ +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++M G
Sbjct: 277 ARLYDAERTAKDSARAADRRAQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAG 336
Query: 397 ENLDIFIDALLLQQEMDAIASFG 419
LD +DAL+ + + + +AS G
Sbjct: 337 TALDEVVDALITEHQAELLASEG 359
>gi|296533064|ref|ZP_06895708.1| peptide chain release factor RF1 [Roseomonas cervicalis ATCC 49957]
gi|296266608|gb|EFH12589.1| peptide chain release factor RF1 [Roseomonas cervicalis ATCC 49957]
Length = 351
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 168/332 (50%), Positives = 227/332 (68%), Gaps = 5/332 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A A+ KEL +L + + LR ++ D ++L+ D +M ++A E
Sbjct: 24 AEGAQVGALAKELSELEPLVAQVEALRAAERARDEAEALLA----DPEMRELAEAEYYAQ 79
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
D L+ L LLPKD AD ILE+R GG+EA LFA ++F Y++Y+ +GW+
Sbjct: 80 RDAVPVLERELRLMLLPKDAADAGSAILEIRPAAGGDEAGLFAAELFAAYQKYAAARGWR 139
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
F V+ ES+L G K A A + G GV+ +LKFESG+HRVQRVP TE GR+HTS V+VA+
Sbjct: 140 FGVLDYDESELGGIKGAVAEVEGQGVFARLKFESGVHRVQRVPATETQGRIHTSTVTVAV 199
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LPQA++VDV++ DLRIDTYR+ G+GGQH N T+SAVR+THIPTG +++Q+ERSQH N
Sbjct: 200 LPQAEDVDVQINESDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGTVVAMQEERSQHKN 259
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
+AKA+KVL A+LYE +RS+ SRS R Q+G+GDRSERIRTYNFPQGRVTDHR+G+T
Sbjct: 260 RAKAMKVLRARLYEAQRSQAVASRSADRRAQVGTGDRSERIRTYNFPQGRVTDHRIGLTL 319
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
H I +M+GE +D IDAL+ + E +A+ G
Sbjct: 320 HKIDRVMQGE-MDDIIDALIAEDEAARLAAEG 350
>gi|421849077|ref|ZP_16282061.1| translation peptide chain release factor 1 [Acetobacter
pasteurianus NBRC 101655]
gi|371460101|dbj|GAB27264.1| translation peptide chain release factor 1 [Acetobacter
pasteurianus NBRC 101655]
Length = 352
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 160/327 (48%), Positives = 230/327 (70%), Gaps = 5/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+++A++E ++ + I+ LR + I + L+ D +M ++A EL ++
Sbjct: 30 FTQASREYAEIEPVVARINALRGVEDGIQQAEQLLA----DPEMKELAEAELADLREQLP 85
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+LQ + SLLPKD AD R ILEVR GG+EA LFA ++F MY RY+ GW+F V+
Sbjct: 86 QLQKDVRLSLLPKDVADARSAILEVRPAAGGDEAGLFAAELFDMYRRYADLNGWRFTVMD 145
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
ES+L G +E A I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+LP+A+
Sbjct: 146 YDESELGGLREGIAEINGKGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVLPEAE 205
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV + DLR+D +R+ G+GGQH N T SAVR+TH+P+G+ +S+Q+E+SQH N+AKA+
Sbjct: 206 EVDVEVNETDLRVDVFRASGAGGQHVNKTESAVRLTHMPSGIVVSMQEEKSQHKNRAKAM 265
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K+L A+LYE ER++ H +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+ +T + I
Sbjct: 266 KILRARLYERERAQAHANRAADRRSQVGTGDRSERIRTYNFPQGRVTDHRINLTLYKIDR 325
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
+M GE LD F+DAL +++ +A+ G
Sbjct: 326 VMLGE-LDEFVDALTQEEQAALLAAEG 351
>gi|337287822|ref|YP_004627294.1| Peptide chain release factor 1 [Thermodesulfobacterium sp. OPB45]
gi|334901560|gb|AEH22366.1| Peptide chain release factor 1 [Thermodesulfobacterium geofontis
OPF15]
Length = 368
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 230/328 (70%), Gaps = 2/328 (0%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
++P Y+K KE +L + + E + +I K LI E D++++++A EEL
Sbjct: 32 SNPELYAKLAKEHAELLEIVETYREYKKILNQIKENKQLI-EVESDEELIELAKEELKEL 90
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ + L+ L LLPKD DE++ ILE+RAG GGEEA+LFA D+ +MY+RY++KKGWK
Sbjct: 91 ENRLEELEKKLPILLLPKDPNDEKNVILEIRAGAGGEEAALFAADLLRMYQRYAEKKGWK 150
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
F+++ E+ L G+KE A I G G Y +LK+ESG+HRVQRVP+TE SGR+HTS +VA+
Sbjct: 151 FDILDANETGLGGFKEVIAKIEGKGAYSRLKYESGVHRVQRVPITESSGRIHTSTATVAV 210
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+ DEV V +R EDL+I+T R+ G GGQH N T SAVR+THIPTG+T++ Q+ERSQH N
Sbjct: 211 LPEVDEVTVEIRPEDLKIETMRASGHGGQHVNKTESAVRITHIPTGITVTCQNERSQHQN 270
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
KA ALK+L AKLYE+ + R Q+G+G+R E+IRTYNFPQ RVTDHR+G+T
Sbjct: 271 KATALKILRAKLYELALREQNEKIQTERKSQVGTGERCEKIRTYNFPQNRVTDHRIGLTV 330
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAI 415
+ + ++++GE LD FIDAL+ + A+
Sbjct: 331 YNLPEVLDGE-LDEFIDALIAHYRVKAL 357
>gi|182677881|ref|YP_001832027.1| peptide chain release factor 1 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|238691232|sp|B2IHL7.1|RF1_BEII9 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|182633764|gb|ACB94538.1| peptide chain release factor 1 [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 358
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 172/361 (47%), Positives = 237/361 (65%), Gaps = 26/361 (7%)
Query: 56 MLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT 115
ML D + ++ +R I R L P+A A + ++EL L + I R
Sbjct: 1 MLPQDKLDLILRRHEEISAR------LTENPDA--ATFVSLSRELAGLDEVAQAIRAYRD 52
Query: 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAI------DEEKRLQSL---LLKSLLPKD 166
+ EI G++++ + D ATE LA+ D +RL + L +LLPKD
Sbjct: 53 EMTEISGMEAM---------LADPATEPELLALAEEELQDARQRLGAFEQHLRIALLPKD 103
Query: 167 DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 226
DE+ ILE+RAGTGG+EA+LFA D+F+MY+RY++ KGW E++ V+E GYKE A
Sbjct: 104 ADDEKSAILEIRAGTGGDEAALFAGDLFRMYQRYAEAKGWGVEILSVSEGTAGGYKEIVA 163
Query: 227 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 286
I+G GV+ KLKFESG HRVQRVP TE GR+HTSA +VA+LPQA+EVDV + DL+ID
Sbjct: 164 EITGKGVFAKLKFESGTHRVQRVPDTETQGRIHTSAATVAVLPQAEEVDVEINEADLKID 223
Query: 287 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR 346
T R+ G+GGQH N T SA+R+TH+PTG I +QDERSQH N+A+A+ +L +++Y+ +R +
Sbjct: 224 TMRAQGAGGQHVNKTESAIRITHLPTGTVIFVQDERSQHKNRARAMSLLRSRIYDAKRQQ 283
Query: 347 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
+ R+ R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +M GE LD IDAL
Sbjct: 284 LEAERAADRKAQVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLDKVMTGEALDEVIDAL 343
Query: 407 L 407
+
Sbjct: 344 I 344
>gi|317486540|ref|ZP_07945363.1| peptide chain release factor 1 [Bilophila wadsworthia 3_1_6]
gi|345887299|ref|ZP_08838489.1| peptide chain release factor 1 [Bilophila sp. 4_1_30]
gi|316922215|gb|EFV43478.1| peptide chain release factor 1 [Bilophila wadsworthia 3_1_6]
gi|345041960|gb|EGW46078.1| peptide chain release factor 1 [Bilophila sp. 4_1_30]
Length = 356
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 169/359 (47%), Positives = 241/359 (67%), Gaps = 5/359 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ ++ER+ LE + P + Y K K L+ + + + R ++ +
Sbjct: 1 MFAKLESLERKFLDLEQELADPTVFNDQDRYRKLTKAHSDLKPVVDIFRQYRELKQNLAD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + D D+ +MA EE+ ++ L+ L LLP D DE++ ILE+RAGTG
Sbjct: 61 NQELLNDA--DPDIREMAHEEIKSIEEKLPELEHDLKVLLLPTDPLDEKNIILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LF D+F+MY RY++K GWK E++ +ESD GYKE A ISG VY +LKFESG
Sbjct: 119 GEEAALFGGDLFRMYCRYAEKMGWKVEIMSQSESDNGGYKEVIALISGDKVYSRLKFESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VAI+P+A+EVD+ L+ EDLR D YRS G GGQ NTT+
Sbjct: 179 THRVQRVPATESQGRIHTSAATVAIMPEAEEVDLDLKPEDLRFDVYRSSGPGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ + QDE+SQH NKAK LK+LC++L +M++ + + + R Q+G+G
Sbjct: 239 SAVRVTHIPTGLVVCCQDEKSQHKNKAKGLKILCSRLLQMKQDEQNAALADQRRAQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
DRSERIRTYNFPQGRVTDHR+ +T +++ ++EGE + +DAL+ + +A+ + S+
Sbjct: 299 DRSERIRTYNFPQGRVTDHRINLTLYSLGKVLEGE-IQELVDALVTHAQTEALKAQASS 356
>gi|402825861|ref|ZP_10875108.1| peptide chain release factor 1 [Sphingomonas sp. LH128]
gi|402260601|gb|EJU10717.1| peptide chain release factor 1 [Sphingomonas sp. LH128]
Length = 356
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 143/261 (54%), Positives = 201/261 (77%)
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
L ++LP+D AD R +LE+RAGTGG+EA+LFA D+++MYE+Y+ ++GW+ E+V SD
Sbjct: 94 LAIAMLPRDAADVRPAMLEIRAGTGGDEAALFAADLYRMYEKYAAEQGWRVEMVSANASD 153
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
+ G+KE A ++G GV+ KLKFESG+HRVQRVP+TE GR+HTSA +VA+LP+ EVDV
Sbjct: 154 VGGFKEVVANVTGSGVFAKLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEPTEVDVA 213
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCA 337
+ ++DL+ID YR+ G+GGQH NTT+SAVR+TH+P+G+ ++ QDERSQH NKAKA++VL A
Sbjct: 214 IEDKDLKIDIYRASGAGGQHVNTTDSAVRITHLPSGIVVTCQDERSQHKNKAKAMQVLRA 273
Query: 338 KLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGE 397
+LYE R + ++ R +GSGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG
Sbjct: 274 RLYEKMRDEAQGAEAEARKAMVGSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEVLEGP 333
Query: 398 NLDIFIDALLLQQEMDAIASF 418
L +DAL+ + E +A+
Sbjct: 334 GLAELVDALIAEDEAKRLAAM 354
>gi|15606216|ref|NP_213594.1| peptide chain release factor 1 [Aquifex aeolicus VF5]
gi|6225940|sp|O67032.1|RF1_AQUAE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|2983407|gb|AAC06991.1| peptide chain release factor RF-1 [Aquifex aeolicus VF5]
Length = 362
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 162/341 (47%), Positives = 239/341 (70%), Gaps = 5/341 (1%)
Query: 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
R+ ++ + L+ +++PE +Y K +KEL++L++ L + QKE+ K
Sbjct: 9 RLDKLQEKYRKLQEELSKPEVIQDVEKYKKLSKELKELQEINELYERYKKAQKELKEAKE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ S DKD+ ++A EE+ +E K+L+ L L+PKD D ++ ILE+RAG GGEE
Sbjct: 69 LL--KSSDKDLRELAEEEVNRLTEEMKKLEEELKVHLVPKDPNDTKNVILEIRAGAGGEE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+F+MY++Y+++KGWK ++ ++ L GYKE A I G G Y +LK+ESG+HR
Sbjct: 127 AALFAADLFRMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE SGR+HTS +VA+LP+ DE D++++ E+L+I+T+R+ G+GGQ+ NTT +AV
Sbjct: 187 VQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAV 246
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+THIPTG+ + QDERSQ NK KALK+L AKL + + +K R EQ+G+G+RS
Sbjct: 247 RITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERS 306
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
E+IRTYNFPQ RVTDHR+ +T + + D++EG LD IDAL
Sbjct: 307 EKIRTYNFPQNRVTDHRINLTLYKLQDVLEG-KLDEIIDAL 346
>gi|152989856|ref|YP_001355578.1| peptide chain release factor 1 [Nitratiruptor sp. SB155-2]
gi|166223578|sp|A6Q162.1|RF1_NITSB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|151421717|dbj|BAF69221.1| peptide chain release factor 1 [Nitratiruptor sp. SB155-2]
Length = 354
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/342 (49%), Positives = 233/342 (68%), Gaps = 5/342 (1%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE---CSEDKDML 137
N +N+ +SP E ++ K++ L I + K KE + I E ED+++
Sbjct: 14 NEINELLSSP-EITQDIKKMTALSKEQSEIEPIVEKAKEYMNILEAIEENRSLIEDEELG 72
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
++A EEL ++++L+ + L+ KD DE+D LE+RAGTGGEEA+LFA D+FK Y
Sbjct: 73 ELAKEELKELEPKKEQLEEEIKVLLISKDPNDEKDIYLEIRAGTGGEEAALFASDLFKAY 132
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
RY++KKGW+ E+V +ESD GYKE A I G GVY +LK+E+G HRVQRVP TE GR
Sbjct: 133 ARYAEKKGWRVEIVSSSESDSGGYKEIIAKIKGQGVYSRLKYEAGTHRVQRVPETESQGR 192
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSAV+VAI+P+ D+VDV + DL+ID YRS G GGQ NTT+SAVR+THIPTG+ ++
Sbjct: 193 IHTSAVTVAIMPEVDDVDVEINPNDLKIDVYRSSGHGGQSVNTTDSAVRITHIPTGIVVA 252
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
+QDE+SQH NK KALK+L A+++E + +K R EQ+GSGDRSERIRTYNFPQ R
Sbjct: 253 MQDEKSQHKNKEKALKILKARIFEKRMREQQEALAKDRKEQVGSGDRSERIRTYNFPQNR 312
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+G+T + + ++M+G +LD I+ L+ + I G
Sbjct: 313 VTDHRIGLTLYKLEEVMQG-DLDQIIEPLIAHYQAQKIQEAG 353
>gi|302872094|ref|YP_003840730.1| peptide chain release factor 1 [Caldicellulosiruptor obsidiansis
OB47]
gi|302574953|gb|ADL42744.1| peptide chain release factor 1 [Caldicellulosiruptor obsidiansis
OB47]
Length = 355
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 162/359 (45%), Positives = 242/359 (67%), Gaps = 8/359 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + PE + E+ K KE L+ ++ + R +K ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQTQEWQKLMKEHSNLQP---IVEKFREYKKILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+ H PTG+ ++ QDERSQH N+ +A+K+L A+LY+ +S R Q+G
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSLQQKEIESQRRSQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+GDRSERIRTYNFPQGRVTDHR+G+T + + +++G +LD IDAL+ + + + G
Sbjct: 298 TGDRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDG-DLDEIIDALITHFQTEKLKEVG 355
>gi|239787352|emb|CAX83829.1| Peptide chain release factor RF-1 [uncultured bacterium]
Length = 354
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/278 (56%), Positives = 208/278 (74%), Gaps = 6/278 (2%)
Query: 133 DKDMLDMATEELC---LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D M +A EEL LA +E ++ +LL LPKD DER ILE+RAGTGG+EA LF
Sbjct: 67 DPGMRQLAEEELGALKLATEETWQMLRVLL---LPKDVDDERSAILEIRAGTGGDEAGLF 123
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY+RY+ GW+F+V+G++E+ L KEA I G GV+ KLKFESG+HRVQRV
Sbjct: 124 AADLMRMYQRYAAIHGWQFDVLGLSETGLGSVKEAQVGIVGKGVFAKLKFESGVHRVQRV 183
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGRVHTSA +VA+LP+ ++VD+ +++EDLRID R+ G+GGQH NTT+SAVR+TH
Sbjct: 184 PETESSGRVHTSAATVAVLPEVEDVDIEIKDEDLRIDICRASGAGGQHVNTTDSAVRLTH 243
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ ++ QDERSQH NKAKA+K++ A+LY++ + R+ R Q+GSGDRSERIR
Sbjct: 244 LPTGLVVAQQDERSQHKNKAKAMKIMRARLYDLRKREQDEVRAADRKSQVGSGDRSERIR 303
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
TYNFPQGRVTDHR+ +T + + +M+GE LD ID L+
Sbjct: 304 TYNFPQGRVTDHRINLTLYKLDQVMQGEALDELIDNLI 341
>gi|167644945|ref|YP_001682608.1| peptide chain release factor 1 [Caulobacter sp. K31]
gi|167347375|gb|ABZ70110.1| peptide chain release factor 1 [Caulobacter sp. K31]
Length = 334
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 156/326 (47%), Positives = 236/326 (72%), Gaps = 10/326 (3%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ +++ E + D +M M ++E+ A+DE+
Sbjct: 14 SKEHAELRPVAEAVQALAKLAAERADLE-------EMTADPEMAAMVSDEIQ-ALDEKLP 65
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L P+D + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GWK EV
Sbjct: 66 VMERELALMLAPRDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQLQGWKVEVDS 125
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+E ++ GYKE A+++G GV+G+ KFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 126 VSEGEMGGYKEIIASVTGDGVFGRWKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 185
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+V++ + + D+RIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH N+A+A+
Sbjct: 186 DVEIEINDADIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQHQNRARAM 244
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K L A+LY+++R+ + +RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 245 KNLKARLYDLQRTALDTARSDARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTVYNLPK 304
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
+MEG+ LD I L+ + + +AS
Sbjct: 305 VMEGDALDDIIKPLIAEDQAARLASL 330
>gi|302390589|ref|YP_003826410.1| peptide chain release factor 1 (bRF-1) [Thermosediminibacter oceani
DSM 16646]
gi|302201217|gb|ADL08787.1| bacterial peptide chain release factor 1 (bRF-1)
[Thermosediminibacter oceani DSM 16646]
Length = 364
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/348 (47%), Positives = 234/348 (67%), Gaps = 3/348 (0%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
AIE R L +++P A E+ K KE L + + E + EI + L+
Sbjct: 7 AIEERYEELTREISEPAVIARQEEWRKLAKEHASLEEIVSCYREYKKVVSEIKESRELLK 66
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E S D++M + EEL EK LQ L LLPKD DE+D I+E+RAG GGEEA+L
Sbjct: 67 ETSNDREMEEFIKEELENLQKREKELQERLKILLLPKDPNDEKDVIMEIRAGAGGEEAAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MY RY++++GWK E++ + ++L G+KE + G G Y +LK+ESG+HRVQR
Sbjct: 127 FAGDLFRMYTRYAERQGWKVELMSSSPTELGGFKEVIFEVMGRGAYSRLKYESGVHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
+P+TE GR+HTS +VA+LP+A+EVDV + +LRID +RS G GGQ NTT+SAVR+T
Sbjct: 187 IPVTEAGGRIHTSTATVAVLPEAEEVDVEINPNELRIDVFRSSGHGGQSVNTTDSAVRIT 246
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PTG+ ++ QDERSQ N+ KA+K+L AKL EM++ + ++ R Q+G+GDRSERI
Sbjct: 247 HLPTGIVVTCQDERSQLKNRDKAMKILRAKLLEMKQREQNEKIAQSRRSQVGTGDRSERI 306
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
RTYNFPQGRVTDHR+G T H + ++++GE LD I+ L+ + + +A
Sbjct: 307 RTYNFPQGRVTDHRIGFTTHQLENILDGE-LDELIERLIAEDQARRLA 353
>gi|414165000|ref|ZP_11421247.1| peptide chain release factor 1 [Afipia felis ATCC 53690]
gi|410882780|gb|EKS30620.1| peptide chain release factor 1 [Afipia felis ATCC 53690]
Length = 358
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/347 (47%), Positives = 236/347 (68%), Gaps = 3/347 (0%)
Query: 75 RSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LE L+ Q A Y +A +EL ++ + + R E+ L+S+I + + D
Sbjct: 13 RHATLEAELMGQVSADT--YVRATRELAEITPVVDAVKAYRAGASELADLESMIADPATD 70
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
DM MA E ++ + L+ + +LLPKD DER+ +LEVRAGTGG+EASLFA D+
Sbjct: 71 ADMRAMAESERPALLERQTELEQHIRIALLPKDAMDERNVMLEVRAGTGGDEASLFAGDL 130
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK EV+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE
Sbjct: 131 FRMYERFATLQGWKVEVISASEGTMGGYKEIVAEVQGRGAFAKLKFESGVHRVQRVPDTE 190
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A+++D+ +++ DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 191 ASGRIHTSAATVAVLPEAEDIDIDIKDTDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 250
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ +++QD RSQH N+A A+ +L +++ + ER R RS R Q+GSGDRSERIRTYNF
Sbjct: 251 IVVNMQDSRSQHKNRASAMNILRSRVLDAERQRAASERSADRRGQVGSGDRSERIRTYNF 310
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
PQGRVTDHR+ +T + + ++ GE L +DAL + + +A+ S
Sbjct: 311 PQGRVTDHRINLTLYKLPQVIAGEALGELVDALTTEHQAALLAAENS 357
>gi|312127875|ref|YP_003992749.1| peptide chain release factor 1 [Caldicellulosiruptor hydrothermalis
108]
gi|311777894|gb|ADQ07380.1| peptide chain release factor 1 [Caldicellulosiruptor hydrothermalis
108]
Length = 355
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/347 (46%), Positives = 238/347 (68%), Gaps = 8/347 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + PE + E+ K KE L+ ++ + R ++ ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQTQEWQKLMKEHSNLQP---IVEKFREYKRILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+ H PTG+ ++ QDERSQH N+ +A+K+L A+LY+ +S R Q+G
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSIQQKEIESQRRSQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+GDRSERIRTYNFPQGRVTDHR+G+T + + +++GE LD IDAL+
Sbjct: 298 TGDRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGE-LDEIIDALI 343
>gi|91974579|ref|YP_567238.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisB5]
gi|119361592|sp|Q13F02.1|RF1_RHOPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91681035|gb|ABE37337.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris BisB5]
Length = 361
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 225/333 (67%)
Query: 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCL 146
E +EY + +EL +L + + R + E+ + +L+ + D +M MA E
Sbjct: 26 EVGASEYVRITRELSELNPLVEAVKAYREVRDELGDVDALLEDPDTDSEMRAMAEAERDA 85
Query: 147 AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +GW
Sbjct: 86 LDAHRAELIQEIRVALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQGW 145
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
EV+ +E + G+KE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA
Sbjct: 146 SVEVISASEGSMGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVA 205
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+ +EVDV ++ +DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 206 VLPEVEEVDVDIKADDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQHK 265
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
N+A A+ +L +++Y+ E+ R+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T
Sbjct: 266 NRASAMNILRSRIYDAEQQRLDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLT 325
Query: 387 HHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ + ++ GE L IDAL + + +A+ G
Sbjct: 326 LYKLPQVIAGEALGELIDALTTEHQAAQLAAQG 358
>gi|330994789|ref|ZP_08318711.1| Peptide chain release factor 1 [Gluconacetobacter sp. SXCC-1]
gi|329758050|gb|EGG74572.1| Peptide chain release factor 1 [Gluconacetobacter sp. SXCC-1]
Length = 353
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/330 (48%), Positives = 234/330 (70%), Gaps = 7/330 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQK-EIDGLKSLIYECSEDKDMLDMATEELCLA 147
S A++S+A++E +L + ++ LR ++ E D + L D +M ++A EL
Sbjct: 27 SGADFSQASREYAELEPIVARVNALRAAEEAERDASQMLA-----DPEMRELAQAELDAL 81
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L+ + ++LP+D+ADER ILE+R GG+EA LFA ++F Y+RY+ +GW+
Sbjct: 82 RTQIPTLRHDIRLAMLPRDEADERSAILEIRPAAGGDEAGLFAAELFGAYQRYADLRGWR 141
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
FEV+ +S+L G +E A+I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+
Sbjct: 142 FEVLEYDQSELGGLREGIASITGRGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAV 201
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+A+EVDV + DLRID YR+ G+GGQH N T SAVR+TH+PT + +++Q+E+SQH N
Sbjct: 202 LPEAEEVDVEVNEGDLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVAMQEEKSQHKN 261
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
+AKA+K+L A+LYE R+ H +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+G+T
Sbjct: 262 RAKAMKILRARLYERNRAAAHETRAADRRAQVGTGDRSERIRTYNFPQGRVTDHRIGLTL 321
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+ I +M GE LD F+DAL +++ +A+
Sbjct: 322 YKIDRVMAGE-LDEFVDALTQEEQAALLAA 350
>gi|91762346|ref|ZP_01264311.1| protein release factor Class I (RF-1) [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718148|gb|EAS84798.1| protein release factor Class I (RF-1) [Candidatus Pelagibacter
ubique HTCC1002]
Length = 357
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/344 (46%), Positives = 240/344 (69%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
+ + LE ++ E +++ +KE L + + + + + E L+ ++ + + D
Sbjct: 13 KHSVLEKELSSGEVDKKLFAEKSKEYSDLNEVIDDARKYFSYEGEKKDLEKILSDSNSDN 72
Query: 135 DMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVF 194
+ +MA EL E + ++ L LLPKD+AD+++ I+E+RAGTGG EASLFA D+F
Sbjct: 73 EFKEMAEVELKDLKLENETIEKKLKLFLLPKDEADKKNAIIEIRAGTGGLEASLFAADLF 132
Query: 195 KMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEK 254
KMYE+ S +K W+ E++ +++S+ G KE A+I G +Y LK+ESG+HRVQRVP TE
Sbjct: 133 KMYEKVSHQKKWELELISMSQSEAGGLKEVIASIRGKNIYSTLKYESGVHRVQRVPDTET 192
Query: 255 SGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGM 314
GRVHTSA +VA+LP+A+EVD+++ + DLRID +R+GG GGQ NTT+SAVR+THIPTG+
Sbjct: 193 QGRVHTSAATVAVLPEAEEVDIKINDSDLRIDVFRAGGPGGQSVNTTDSAVRITHIPTGL 252
Query: 315 TISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFP 374
++S QD++SQH NKAK + +L ++LYE+ERSRI RS+ R +IG+GDRSERIRTYNFP
Sbjct: 253 SVSQQDQKSQHKNKAKGMLILRSRLYELERSRIEGERSEDRKSKIGTGDRSERIRTYNFP 312
Query: 375 QGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
QGRVTDHR+ +T H + +EGE D ++ L LQ + + +++
Sbjct: 313 QGRVTDHRINLTLHKLEAFLEGEAFDEMVENLTLQAQEEKLSNL 356
>gi|297182760|gb|ADI18914.1| protein chain release factor a [uncultured SAR11 cluster bacterium
HF0010_09O16]
Length = 356
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/328 (49%), Positives = 234/328 (71%), Gaps = 3/328 (0%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
AE SK +L ++ +S + + + E L+ ++ + + D++++ MA EL +
Sbjct: 32 AEKSKEYSDLNEIVNSAKKYASYKNDKIE---LEKILNDKNSDEELMKMAHTELSELNSQ 88
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
++ + L LLPKD+AD+++ I+E+RAGTGG EASLFA D+FKMYE+ KK W E+
Sbjct: 89 FEQNEKKLKLFLLPKDEADKKNAIIEIRAGTGGLEASLFAGDLFKMYEKVCNKKKWSLEL 148
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ ++ SD G KE A+I G +Y LK+ESG+HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 149 ISISRSDAGGLKEVIASIKGNNIYSTLKYESGVHRVQRVPDTETQGRVHTSAATVAVLPE 208
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A+EVD+++ DLRID +R+GG GGQ NTT+SAVR+TH+P+G+++S QDE+SQH NKAK
Sbjct: 209 AEEVDLKINETDLRIDVFRAGGPGGQSVNTTDSAVRITHLPSGLSVSQQDEKSQHKNKAK 268
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
+K+L A+LYE+ER+RI RS R +IG+GDRSERIRTYNFPQGRVTDHR+ +T H +
Sbjct: 269 GMKILRARLYELERTRIDQERSADRKSKIGTGDRSERIRTYNFPQGRVTDHRINLTLHKL 328
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASF 418
+ +EGE D I++L L+ + ++++
Sbjct: 329 EEFLEGEAFDEIIESLSLKAQEESLSKL 356
>gi|347759800|ref|YP_004867361.1| translation peptide chain release factor 1 [Gluconacetobacter
xylinus NBRC 3288]
gi|347578770|dbj|BAK82991.1| translation peptide chain release factor 1 [Gluconacetobacter
xylinus NBRC 3288]
Length = 353
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 236/335 (70%), Gaps = 17/335 (5%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQK-EIDGLKSLIYECSEDKDMLDMATEELCLA 147
S A++S+A++E +L + ++ LR ++ E D + L D +M ++A EL
Sbjct: 27 SGADFSQASREYAELEPIVTRVNALRAAEEAERDASQMLA-----DPEMRELAQAEL--- 78
Query: 148 IDEEKRLQSLLLK-----SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQ 202
+E R Q L+ ++LP+D+ADER ILE+R GG+EA LFA ++F Y+RY+
Sbjct: 79 --DELRTQIPTLRHDIRLAMLPRDEADERSAILEIRPAAGGDEAGLFASELFGAYQRYAD 136
Query: 203 KKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSA 262
+GW+FEV+ +S+L G +E A+I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS
Sbjct: 137 LRGWRFEVLEYDQSELGGLREGIASITGRGVFARLKYESGVHRVQRVPATESQGRIHTST 196
Query: 263 VSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER 322
V+VA+LP+A+EVDV + DLRID YR+ G+GGQH N T SAVR+TH+PT + +++Q+E+
Sbjct: 197 VTVAVLPEAEEVDVEVNEGDLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVAMQEEK 256
Query: 323 SQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHR 382
SQH N+AKA+K+L A+LYE R+ H SR+ R Q+G+GDRSERIRTYNFPQGRVTDHR
Sbjct: 257 SQHKNRAKAMKILRARLYERNRAAAHESRAADRRAQVGTGDRSERIRTYNFPQGRVTDHR 316
Query: 383 VGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+G+T + I +M GE LD F+DAL +++ +A+
Sbjct: 317 IGLTLYKIDRVMAGE-LDEFVDALTQEEQAALLAA 350
>gi|329113396|ref|ZP_08242177.1| Peptide chain release factor 1 [Acetobacter pomorum DM001]
gi|326697221|gb|EGE48881.1| Peptide chain release factor 1 [Acetobacter pomorum DM001]
Length = 352
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/327 (48%), Positives = 231/327 (70%), Gaps = 5/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+++A++E ++ + I+ LR + I + L+ D +M ++A EL ++
Sbjct: 30 FTQASREYAEIEPVVARINALRGVEDGIRQAELLLA----DPEMKELAEAELTELREQLP 85
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+LQ + SLLPKD AD R ILEVR GG+EA+LFA ++F MY RY+ GW+F V+
Sbjct: 86 QLQKDVRLSLLPKDVADARSAILEVRPAAGGDEAALFAAELFDMYRRYADLNGWRFTVMD 145
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
ES+L G +E A I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+LP+A+
Sbjct: 146 YDESELGGLREGIAEINGKGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVLPEAE 205
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV + DLR+D +R+ G+GGQH N T SAVR+TH+P+G+ +S+Q+E+SQH N+AKA+
Sbjct: 206 DVDVEVNETDLRVDVFRASGAGGQHVNKTESAVRLTHMPSGIVVSMQEEKSQHKNRAKAM 265
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K+L A+LYE ER++ H +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+ +T + I
Sbjct: 266 KILRARLYERERAQAHANRAADRRSQVGTGDRSERIRTYNFPQGRVTDHRINLTLYKIDR 325
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
+M GE LD F+DAL +++ +A+ G
Sbjct: 326 VMLGE-LDEFVDALTQEEQAALLAAEG 351
>gi|162138527|ref|YP_483698.2| peptide chain release factor 1 [Rhodopseudomonas palustris HaA2]
gi|119361590|sp|Q2J423.2|RF1_RHOP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 361
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 230/334 (68%), Gaps = 2/334 (0%)
Query: 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELC 145
E + +Y + +EL +L + + R + E+ + L+ + + D +M MA E
Sbjct: 26 EVAANDYVRITRELSELNPLVEAVKAYREVRDELGDIDDLLEDPATDPEMRAMAEAERDA 85
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
L E +Q + + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +G
Sbjct: 86 LDAHREDLIQQIRV-ALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQG 144
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
W EV+ +E + G+KE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +V
Sbjct: 145 WSVEVISASEGTVGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATV 204
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A+LP+ +EVDV ++ +DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 205 AVLPEVEEVDVDIKPDDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQH 264
Query: 326 MNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGI 385
N+A A+ +L +++Y+ E+ RI +RS R +++GSGDRSERIRTYNFPQGRVTDHR+ +
Sbjct: 265 KNRASAMNILRSRIYDAEQQRIDSARSAERKQKVGSGDRSERIRTYNFPQGRVTDHRINL 324
Query: 386 THHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
T + + ++ GE L IDAL + ++ +A+ G
Sbjct: 325 TLYKLPQVIAGEALGELIDALTTEHQVAQLAAQG 358
>gi|71083224|ref|YP_265943.1| protein release factor class I [Candidatus Pelagibacter ubique
HTCC1062]
gi|119361574|sp|Q4FN99.1|RF1_PELUB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|71062337|gb|AAZ21340.1| protein release factor Class I (RF-1) [Candidatus Pelagibacter
ubique HTCC1062]
Length = 357
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/344 (46%), Positives = 240/344 (69%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
+ + LE ++ E +++ +KE L + + + + + E L+ ++ + + D
Sbjct: 13 KHSILEKELSSGEVDKKLFAEKSKEYSDLNEVIDDARKYFSYEGEKKDLEKILSDSNSDN 72
Query: 135 DMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVF 194
+ +MA EL E + ++ L LLPKD+AD+++ I+E+RAGTGG EASLFA D+F
Sbjct: 73 EFKEMAEVELKDLKLENETIEKKLKLFLLPKDEADKKNAIIEIRAGTGGLEASLFAADLF 132
Query: 195 KMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEK 254
KMYE+ S +K W+ E++ +++S+ G KE A+I G +Y LK+ESG+HRVQRVP TE
Sbjct: 133 KMYEKVSHQKKWELELISMSQSEAGGLKEVIASIRGKNIYSTLKYESGVHRVQRVPDTET 192
Query: 255 SGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGM 314
GRVHTSA +VA+LP+A+EVD+++ + DLRID +R+GG GGQ NTT+SAVR+THIPTG+
Sbjct: 193 QGRVHTSAATVAVLPEAEEVDIKINDSDLRIDVFRAGGPGGQSVNTTDSAVRITHIPTGL 252
Query: 315 TISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFP 374
++S QD++SQH NKAK + +L ++LYE+ERSRI RS+ R +IG+GDRSERIRTYNFP
Sbjct: 253 SVSQQDQKSQHKNKAKGMLILRSRLYELERSRIEGERSEDRKSKIGTGDRSERIRTYNFP 312
Query: 375 QGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
QGRVTDHR+ +T H + +EGE D ++ L LQ + + +++
Sbjct: 313 QGRVTDHRINLTLHKLEAFLEGEAFDEMVENLTLQAQEEKLSNL 356
>gi|304317929|ref|YP_003853074.1| peptide chain release factor 1 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779431|gb|ADL69990.1| peptide chain release factor 1 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 353
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 168/359 (46%), Positives = 240/359 (66%), Gaps = 9/359 (2%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
D +K +E R + + R+ + E++ + E + K KE L + ++ + R +K
Sbjct: 3 DKLKTIEDRYVELSRKLSDPESMKDMDE-----WKKMAKEHASLEE---IVQKYREYKKV 54
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+D +KS D D+ DMA EEL + E +L + + LLPKD DE+D I+E+RA
Sbjct: 55 LDDIKSTKEIIELDDDLKDMAQEELKSLEERENKLLNEIKLLLLPKDPNDEKDVIMEIRA 114
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA D+F+MY Y++KK WK+E++ ++L G+KE I+G G Y +LKF
Sbjct: 115 GAGGEEAALFAYDLFRMYTMYAEKKHWKYEIMSSNATELGGFKEVILNIAGKGAYSRLKF 174
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTS +VA+LP+ ++VD+ + D++ID +RSGG GGQ N
Sbjct: 175 ESGVHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDIEINPNDIKIDVFRSGGHGGQSVN 234
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ IS QDERSQ N+ +A+K+L AKLYEM R S R Q+
Sbjct: 235 TTDSAVRLTHIPTGIVISCQDERSQLQNRERAMKILRAKLYEMAREEKEKEISMTRKLQV 294
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
G+GDRSERIRTYNFPQGRVTDHR+G+T + + +++G +LD IDALL + + + + S
Sbjct: 295 GTGDRSERIRTYNFPQGRVTDHRIGLTLYKLQMVLDG-DLDEIIDALLAEDQAERLESM 352
>gi|332298739|ref|YP_004440661.1| Peptide chain release factor 1 [Treponema brennaborense DSM 12168]
gi|332181842|gb|AEE17530.1| Peptide chain release factor 1 [Treponema brennaborense DSM 12168]
Length = 359
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 238/355 (67%), Gaps = 4/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ + +R A L +++ PE P Y + +E L M +E + + I
Sbjct: 1 MLKKLEELSKRYAELNDMIQDPELVRDPKRYKEIMREHSHLSQVMDSYAEYKEVLQGISE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ LI E +D DM +MA EEL ++S L L+P D +E++ I+E+R G G
Sbjct: 61 AQHLITE-EDDHDMKEMAREELKALESRVPEMESALKMLLIPPDPLEEKNIIMEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EASLFA D+F+MY RY++ K WK+E++ +E+++ GYKE S +ISG VYG L++E G
Sbjct: 120 GDEASLFAADLFRMYTRYAEIKNWKYEIMDASETEVGGYKEISFSISGKFVYGSLRWEGG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSAV+VA+LP+A+E ++ +R EDLR+D R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEAQGRIHTSAVTVAVLPEAEETEIEIRPEDLRVDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ + QDE+SQ NKAKA++VL A+L+++E S+ RS R +GSG
Sbjct: 240 SAVRLTHLPTGLVVIQQDEKSQIKNKAKAMRVLRARLFDLEESKKQAERSAARKSMVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
DRSERIRTYNFPQ RVTDHR+ +T + + M+G NLD +DAL + + A+ S
Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDQFMQG-NLDEMLDALNISAKEAALKS 353
>gi|385808994|ref|YP_005845390.1| protein chain release factor A [Ignavibacterium album JCM 16511]
gi|383801042|gb|AFH48122.1| Protein chain release factor A [Ignavibacterium album JCM 16511]
Length = 359
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/339 (47%), Positives = 237/339 (69%), Gaps = 4/339 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+++R + L + PE +P + NKE ++ D + + + K+I+G K +I
Sbjct: 10 VKQRYDQINELYSNPEYINNPEKMIALNKEKSEIEDVVQVYEKYVKILKDIEGNKEIINN 69
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+E K+++DMA E+ ++++L+ + LLPKD D+++ I+E+RAGTGGEEA+LF
Sbjct: 70 STE-KELVDMAYAEMDELNAQKEKLEEEIKVLLLPKDPNDDKNVIMEIRAGTGGEEAALF 128
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY++ +GWK+E++ + E+ L G KE ++SG VYG LK+ESG+HRVQRV
Sbjct: 129 ANDLFRMYTRYAEIRGWKYEIIDLNETGLGGIKEVILSVSGDNVYGDLKYESGVHRVQRV 188
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGRVHTSA SVA+LP+ ++V+V + DL+ID +RSGG+GGQ+ N +AVR+TH
Sbjct: 189 PETEASGRVHTSAASVAVLPEVEDVEVEINPNDLKIDIFRSGGAGGQNVNKVETAVRITH 248
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ + QDERSQ N+ KA+KVL A+LY+ME + S R Q+ SGDRSE+IR
Sbjct: 249 LPTGIVVQCQDERSQLKNRQKAMKVLKARLYDMEMRKQMEQISAQRKSQVRSGDRSEKIR 308
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
TYNFPQ RVTDHR+G+T + +S++MEG+ LD I+ L L
Sbjct: 309 TYNFPQNRVTDHRIGLTLYNLSNIMEGQ-LDNLIEQLKL 346
>gi|86570230|gb|ABD04787.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris HaA2]
Length = 373
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 155/334 (46%), Positives = 230/334 (68%), Gaps = 2/334 (0%)
Query: 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELC 145
E + +Y + +EL +L + + R + E+ + L+ + + D +M MA E
Sbjct: 38 EVAANDYVRITRELSELNPLVEAVKAYREVRDELGDIDDLLEDPATDPEMRAMAEAERDA 97
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
L E +Q + + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +G
Sbjct: 98 LDAHREDLIQQIRV-ALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQG 156
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
W EV+ +E + G+KE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +V
Sbjct: 157 WSVEVISASEGTVGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATV 216
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A+LP+ +EVDV ++ +DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 217 AVLPEVEEVDVDIKPDDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQH 276
Query: 326 MNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGI 385
N+A A+ +L +++Y+ E+ RI +RS R +++GSGDRSERIRTYNFPQGRVTDHR+ +
Sbjct: 277 KNRASAMNILRSRIYDAEQQRIDSARSAERKQKVGSGDRSERIRTYNFPQGRVTDHRINL 336
Query: 386 THHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
T + + ++ GE L IDAL + ++ +A+ G
Sbjct: 337 TLYKLPQVIAGEALGELIDALTTEHQVAQLAAQG 370
>gi|333998861|ref|YP_004531473.1| peptide chain release factor 1 [Treponema primitia ZAS-2]
gi|333740985|gb|AEF86475.1| peptide chain release factor 1 [Treponema primitia ZAS-2]
Length = 361
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 169/358 (47%), Positives = 245/358 (68%), Gaps = 28/358 (7%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT------KQK 118
M +R+ ++ RR + L+ PE ++ +K RD+M S+L + +
Sbjct: 1 MNERLESLLRRHEEVSRLIQDPELV--------RDQKKYRDTMKEYSQLEALASTQRETE 52
Query: 119 EIDG----LKSLIYECSEDKDMLDMATEEL----CLAIDEEKRLQSLLLKSLLPKDDADE 170
EI G KSL + +D +M +MA EEL D E RL+ LL+ P+D DE
Sbjct: 53 EISGQLEDAKSL-SQNEKDPEMREMAKEELRELETRLKDAEDRLKFLLI----PRDPLDE 107
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ I+E+RAGTGG+EA+LFA D+++MY R+++ +GWKFE++ E++L G+KE +I+G
Sbjct: 108 KNIIMEIRAGTGGDEAALFASDLYRMYARFAETRGWKFEIMSSNETELGGFKEIVFSITG 167
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
VY L++ESG+HRVQRVP TE SGR+HTSAV+VA+LP+ADE ++ +R EDLRID R+
Sbjct: 168 NNVYENLRYESGVHRVQRVPATEASGRIHTSAVTVAVLPEADETEIDIRQEDLRIDVMRA 227
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
GG GGQ NTT+SAVR+THIPTG+ + QDE+SQ NKAKA+++L A++YEME ++
Sbjct: 228 GGPGGQCVNTTDSAVRITHIPTGVVVHCQDEKSQIKNKAKAMRILRARVYEMEEAKAASE 287
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
R++ R Q+GSGDRSERIRTYNFPQ R+TDHR+ +T + + +M+G+ ++F DAL L
Sbjct: 288 RAEARKNQVGSGDRSERIRTYNFPQNRLTDHRINLTLYKLDLIMQGDVEELF-DALKL 344
>gi|399519470|ref|ZP_10760265.1| peptide chain release factor 1 [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399112566|emb|CCH36823.1| peptide chain release factor 1 [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 360
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 158/329 (48%), Positives = 227/329 (68%), Gaps = 4/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE ++ + ELR Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 34 QFRAYSKEYAEIEPVIATFRELRKVQSDLEGAQALLKDS--DADMREMAEEEVAQAKEAL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ EV+
Sbjct: 92 VTLEDKLQRMLLPKDPNDGRNVYLEIRAGTGGDEAAIFSGDLFRMYSRYAERQGWRVEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SANEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DE V + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH N+AK
Sbjct: 212 DEQVAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQHKNRAK 271
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ L AKL + + + H S+ R +GSGDRSERIRTYNFPQGRVTDHR+ +T +++
Sbjct: 272 AMAWLAAKLQDQQEAAAHKEISETRKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYSL 331
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+D++ G +D I+ LL + + D +A+ G
Sbjct: 332 NDVIAG-GVDAIIEPLLAEYQADQLAALG 359
>gi|119383645|ref|YP_914701.1| peptide chain release factor 1 [Paracoccus denitrificans PD1222]
gi|166223583|sp|A1B0G1.1|RF1_PARDP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119373412|gb|ABL69005.1| bacterial peptide chain release factor 1 (bRF-1) [Paracoccus
denitrificans PD1222]
Length = 351
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 245/356 (68%), Gaps = 11/356 (3%)
Query: 66 EQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
E R++ I R LE +N A PA E + ++E +L+ + I++ R+ Q++I
Sbjct: 4 EDRLIQIVERFEYLEARLN---AGPAAEEIAAISREYAELKPVVAQIAQWRSVQEDIRQA 60
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++++ D +M ++A +EL L+ L +LLP+D AD R ILE+R GTGG
Sbjct: 61 QAMLA----DHEMRELAQDELSRLRAGLPALEHALRVALLPRDAADARPAILEIRPGTGG 116
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
EEA+LFA D+ MY R+++ +GW+F+++ + SDL G +EA A I G GV+ +LK+ESG+
Sbjct: 117 EEAALFAGDLLDMYRRFAESQGWQFQMLELVRSDLGGVREAMARIEGEGVFARLKYESGV 176
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A+EVDV + D+RIDT R+ G+GGQH NTT+S
Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAEEVDVDIPAADIRIDTMRASGAGGQHVNTTDS 236
Query: 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGD 363
AVR+TH+PTG+ ++ E+SQH N+A A+ VL A+LY+MERSR R+ R Q+GSGD
Sbjct: 237 AVRITHLPTGIVVT-SSEKSQHQNRANAMAVLRARLYDMERSRADAERAADRKSQVGSGD 295
Query: 364 RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RSERIRTYNFPQGR+TDHR+G+T +A+ +M+GE +I ++AL + +A+ G
Sbjct: 296 RSERIRTYNFPQGRMTDHRIGLTLYALDRIMQGEIGEI-VEALAAHDQAARLAAQG 350
>gi|399090598|ref|ZP_10754117.1| peptide chain release factor 1 [Caulobacter sp. AP07]
gi|398027667|gb|EJL21211.1| peptide chain release factor 1 [Caulobacter sp. AP07]
Length = 334
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/326 (48%), Positives = 234/326 (71%), Gaps = 10/326 (3%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ GL+ E + D DM M +E+ A+DE+
Sbjct: 14 SKEHAELRPVAEAVQALAKLAAERA---GLE----EMASDPDMAAMVADEMQ-ALDEKLP 65
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L P+D + ILEVRAGTGG+EA+LFA D+F+MY+RY+ +GWK EV
Sbjct: 66 VMERELALMLAPRDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYASLQGWKVEVDS 125
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+E ++ GYKE A+++G GV+G+ KFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 126 VSEGEMGGYKEIIASVTGDGVFGRWKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 185
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+V++ + + DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH N+A+A+
Sbjct: 186 DVEIEINDSDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQHQNRARAM 244
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K L A+LY+M+R + +RS R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + ++
Sbjct: 245 KNLKARLYDMQREALDTARSDARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYNLAR 304
Query: 393 MMEGENLDIFIDALLLQQEMDAIASF 418
++EG+ LD I L+ + + +AS
Sbjct: 305 VIEGDALDDIIKPLIAEDQAARLASL 330
>gi|146306094|ref|YP_001186559.1| peptide chain release factor 1 [Pseudomonas mendocina ymp]
gi|166223589|sp|A4XR61.1|RF1_PSEMY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145574295|gb|ABP83827.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudomonas
mendocina ymp]
Length = 360
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/329 (48%), Positives = 226/329 (68%), Gaps = 4/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE ++ + ELR Q +++G ++L+ E D D+ +MA EE+ A +
Sbjct: 34 QFRAYSKEYAEIEPVIATFRELRKVQSDLEGAQALLKES--DPDLREMAEEEVAQAKEAL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L + LLPKD D R+ LEVRAGTGG+EA++F+ D+F+MY RY++K+GW+ EV+
Sbjct: 92 TTLEDKLQRMLLPKDPNDGRNVYLEVRAGTGGDEAAIFSGDLFRMYSRYAEKQGWRVEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SANEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DE + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH N+AK
Sbjct: 212 DEQAAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQHKNRAK 271
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ L AKL + + + H S+ R +GSGDRSERIRTYNFPQGRVTDHR+ +T +++
Sbjct: 272 AMAWLAAKLQDQQEAAAHKEISETRKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYSL 331
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
S++M G ++ I+ LL + + D +A+ G
Sbjct: 332 SEVMAG-GVEAVIEPLLAEYQADQLAALG 359
>gi|408374426|ref|ZP_11172113.1| peptide chain release factor 1 [Alcanivorax hongdengensis A-11-3]
gi|407765701|gb|EKF74151.1| peptide chain release factor 1 [Alcanivorax hongdengensis A-11-3]
Length = 361
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/291 (54%), Positives = 214/291 (73%), Gaps = 8/291 (2%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D DM +M EE A + E R+ L L K +LP+D D + LEVRAGTGG+EA+LF
Sbjct: 73 DPDMREMGHEE---AREAEARMAELGDELQKLMLPRDPRDGANVFLEVRAGTGGDEAALF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY+ + GWK E+V +E + GYKE A + G GVY +LKFESG HRVQRV
Sbjct: 130 AGDLFRMYSRYADRMGWKVELVSASEGEHGGYKEVIARVIGDGVYSRLKFESGAHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GR+HTSA +VAI+ +A+++ D+++RNEDLRIDTYRS G+GGQH NTT+SAVR+T
Sbjct: 190 PATESQGRIHTSACTVAIMAEAEDLGDIQIRNEDLRIDTYRSSGAGGQHVNTTDSAVRIT 249
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PTG+ + QDERSQH NKAKA+ +L A+LY+ +++ H ++ R +GSGDRSERI
Sbjct: 250 HLPTGVVVECQDERSQHKNKAKAMSLLSARLYDAQQNAAHAEQAAERKSLVGSGDRSERI 309
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RTYNFPQGRVTDHR+ +T + + ++MEG +LD + ALL + + D +A+ G
Sbjct: 310 RTYNFPQGRVTDHRINLTLYRLGEVMEG-DLDEVLGALLAEYQADQLAALG 359
>gi|421504253|ref|ZP_15951196.1| peptide chain release factor 1 [Pseudomonas mendocina DLHK]
gi|400345023|gb|EJO93390.1| peptide chain release factor 1 [Pseudomonas mendocina DLHK]
Length = 360
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 159/329 (48%), Positives = 226/329 (68%), Gaps = 4/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE ++ + ELR Q +++G ++L+ E D D+ +MA EE+ A +
Sbjct: 34 QFRAYSKEYAEIEPVIATFRELRKVQSDLEGAQALLKES--DPDLREMAEEEVAQAKEAL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L + LLPKD D R+ LEVRAGTGG+EA++F+ D+F+MY RY++K+GW+ EV+
Sbjct: 92 TTLEDKLQRMLLPKDPNDGRNVYLEVRAGTGGDEAAIFSGDLFRMYSRYAEKQGWRVEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SANEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DE + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH N+AK
Sbjct: 212 DEQAAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQHKNRAK 271
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ L AKL + + + H S+ R +GSGDRSERIRTYNFPQGRVTDHR+ +T +++
Sbjct: 272 AMAWLAAKLQDQQEAAAHKEISETRKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYSL 331
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
S++M G ++ I+ LL + + D +A+ G
Sbjct: 332 SEVMAG-GVEAVIEPLLAEYQADQLAALG 359
>gi|339018166|ref|ZP_08644307.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
tropicalis NBRC 101654]
gi|338752725|dbj|GAA07611.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
tropicalis NBRC 101654]
Length = 352
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 146/259 (56%), Positives = 201/259 (77%), Gaps = 1/259 (0%)
Query: 161 SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG 220
++LP+D ADER ILEVR GG+EA+LFA ++F +Y RY+ +GW+F ++ ES+L G
Sbjct: 94 AMLPRDAADERSAILEVRPAAGGDEAALFAAELFDLYRRYADLRGWRFSIMDYDESELGG 153
Query: 221 YKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRN 280
+E A ISG GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+LP+A+EVDV +
Sbjct: 154 LREGIAEISGKGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVLPEAEEVDVTVDE 213
Query: 281 EDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLY 340
DLRID YR+ G+GGQH N T SAVR+TH+PTG+ +++Q+E+SQH N+AKA+K+L A+LY
Sbjct: 214 GDLRIDVYRASGAGGQHVNKTESAVRITHLPTGIVVAMQEEKSQHKNRAKAMKILRARLY 273
Query: 341 EMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLD 400
E ER+ +H SR+ R Q+G+GDRSERIRTYNFPQGRVTDHRV +T + I +M GE +D
Sbjct: 274 ERERAEVHASRAANRKSQVGTGDRSERIRTYNFPQGRVTDHRVNLTLYKIDRIMLGE-ID 332
Query: 401 IFIDALLLQQEMDAIASFG 419
F+DAL +++ + +A+ G
Sbjct: 333 DFVDALTQEEQAELLAAEG 351
>gi|316932075|ref|YP_004107057.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1]
gi|315599789|gb|ADU42324.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1]
Length = 361
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 228/331 (68%), Gaps = 2/331 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELCLAIDE 150
+Y + +EL +L + + R + E+ + L+ + + + +M MA E L
Sbjct: 31 DYVRITRELSELNPLVEAVKSYRQVRDELGEIDELLEDPATEPEMRAMAEAERDALDAHR 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
++ +Q + + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +GW EV
Sbjct: 91 DELIQQIRI-ALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQGWSVEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ +E + G+KE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 ISASEGTVGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
++VDV ++ EDLRI+T R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH N+A
Sbjct: 210 VEDVDVDIKQEDLRIETMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQHKNRAS 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ +L +++Y+ ER R+ +RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 270 AMNILRSRIYDAERQRVDAARSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKL 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFGST 421
++ GE L IDAL + + +A G+
Sbjct: 330 PQVIAGEALGELIDALTTEHQAAQLAEQGAA 360
>gi|297543676|ref|YP_003675978.1| peptide chain release factor 1 [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841451|gb|ADH59967.1| peptide chain release factor 1 [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 356
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 243/356 (68%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + + + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVGEWRKYVKEHAAIEEIVLKYREYKKVVEDINS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S++K++ +MA EEL ++++ L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSDEKELREMAEEELSHLEEKKEELLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D+RID +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIRIDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ ++ QDERSQ N+ +ALK+L AKLYEM +++R Q+G+G
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQLQNRERALKILRAKLYEMALQEQQKEIAEVRKSQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+RSERIRTYNFPQGRVTDHR+G+T + + ++++G +LD IDAL+L + + + +
Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDG-DLDEIIDALILNDQAEKLKNV 353
>gi|365856781|ref|ZP_09396791.1| peptide chain release factor 1 [Acetobacteraceae bacterium AT-5844]
gi|363717524|gb|EHM00896.1| peptide chain release factor 1 [Acetobacteraceae bacterium AT-5844]
Length = 351
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 164/330 (49%), Positives = 228/330 (69%), Gaps = 5/330 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A A+ +EL +L + + ELR ++ D ++L+ D +M ++A E
Sbjct: 24 ADGAKVGAIARELSELDPLVEKVGELRAAERARDEAEALMA----DPEMRELAESEFYAQ 79
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
D L+ L LLPKD ADE + ILE+R GG+EA LFA ++F Y+RY+ +GW+
Sbjct: 80 RDAVPVLERELRLMLLPKDAADEGNAILEIRPAAGGDEAGLFAGELFGAYQRYAATRGWR 139
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
FEV+ ES++ G K A+A + G GV+ +LKFESG+HRVQRVP TE GR+HTS V+VA+
Sbjct: 140 FEVLDYDESEVGGIKGATAEVQGRGVFARLKFESGVHRVQRVPATETQGRIHTSTVTVAV 199
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+A+EVDV++ DLRIDTYR+ G+GGQH N T+SAVR+THIP+G+ +++Q+ERSQH N
Sbjct: 200 LPEAEEVDVQINESDLRIDTYRASGAGGQHVNKTDSAVRITHIPSGVVVAMQEERSQHKN 259
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
+AKA+KVL A+LY+ +R +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+G+T
Sbjct: 260 RAKAMKVLRARLYDAQRLAADTARAGDRKAQVGTGDRSERIRTYNFPQGRVTDHRIGLTL 319
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIAS 417
H I +M+GE D IDAL + E +A+
Sbjct: 320 HKIDRVMQGE-FDEIIDALTAEDEAARLAA 348
>gi|301060315|ref|ZP_07201178.1| peptide chain release factor 1 [delta proteobacterium NaphS2]
gi|300445511|gb|EFK09413.1| peptide chain release factor 1 [delta proteobacterium NaphS2]
Length = 358
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/349 (47%), Positives = 237/349 (67%), Gaps = 5/349 (1%)
Query: 73 ERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYEC 130
E R LE + QPE + K KE L + ++ E + Q EI +SL+ +
Sbjct: 11 EERYRELETFLGQPEIIQDQKRFQKYAKEHSDLTPIITVLREHQALQDEIAESQSLLQDP 70
Query: 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D ++ +A EE+ D +R L LLPKD DE++ +LE+RAGTGGEEA+LFA
Sbjct: 71 --DPEIKKLAKEEIEGLNDRLERTADELTVLLLPKDPNDEKNILLEIRAGTGGEEAALFA 128
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+F+MY RY++ + WK E++ + + G+KE I G V+ +LK+ESG+HRVQRVP
Sbjct: 129 ADLFRMYSRYAELRRWKTEILSQNMTGIGGFKEVIVLIEGHRVFSRLKYESGVHRVQRVP 188
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSAV+VA+LP+A+EVDV ++ EDLRID YRS G GGQH NTT+SAVR+TH+
Sbjct: 189 ETEAQGRIHTSAVTVAVLPEAEEVDVEIKPEDLRIDVYRSSGHGGQHVNTTDSAVRITHL 248
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ ++ QDE+SQH NKAKA+KVL +++ ++E + H S+ R +G+GDRSERIRT
Sbjct: 249 PTGLVVTCQDEKSQHKNKAKAMKVLRSRMLDLETAHQHSRISEERKTMVGTGDRSERIRT 308
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YNFPQGRVTDHR+G+T + + D ++G +L++ I+ L+ + +A+ + G
Sbjct: 309 YNFPQGRVTDHRIGLTLYKLDDFLQG-DLNLIIEPLITYFQSEALKNSG 356
>gi|40062805|gb|AAR37689.1| peptide chain release factor 1 [uncultured marine bacterium 440]
Length = 359
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 156/330 (47%), Positives = 224/330 (67%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
S ++ K +KE + + ++ + +KE L+ +I + D++M+ +A +EL +
Sbjct: 27 SKKDFVKKSKEYSSIGEVINQAKGYLSFEKEKIELEKIIEDKESDEEMVQLAKKELNELL 86
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
++ K + +L LLPKD AD ++ ILE+RAGTGG+EA LF D++KMYE+ W F
Sbjct: 87 EKNKTHEKILRIYLLPKDGADAKNAILEIRAGTGGDEAGLFVADLYKMYEKVCLNNKWSF 146
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
E++ +++S G+KE I G +Y LK+E G+HRVQRVP TE GRVHTSA +VA+L
Sbjct: 147 EIISISKSGAGGFKEVILLIKGNNIYSFLKYERGVHRVQRVPKTETQGRVHTSAATVAVL 206
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
P+A+EVD++++ +DLRID YRS GSGGQ NTT+SAVR+THIPTG+ ++ QDE+SQH N+
Sbjct: 207 PEAEEVDIKIQEKDLRIDVYRSTGSGGQSVNTTDSAVRITHIPTGIVVTNQDEKSQHKNR 266
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
AK +K+L +++YE ER + RSK R QIGSGDRSERIRTYNFPQGRVTDHR+ +T H
Sbjct: 267 AKGMKILRSRVYEAEREKKDKERSKDRKNQIGSGDRSERIRTYNFPQGRVTDHRINVTLH 326
Query: 389 AISDMMEGENLDIFIDALLLQQEMDAIASF 418
+ + + G+ L LQ + +AS
Sbjct: 327 KLKEFLSGDAFGELNQNLRLQDQKIKLASL 356
>gi|254428729|ref|ZP_05042436.1| peptide chain release factor 1 [Alcanivorax sp. DG881]
gi|196194898|gb|EDX89857.1| peptide chain release factor 1 [Alcanivorax sp. DG881]
Length = 361
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 154/293 (52%), Positives = 216/293 (73%), Gaps = 8/293 (2%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D DM +M EE A D + R++ L L K +LPKD D + LEVRAGTGG+EA++F
Sbjct: 73 DPDMREMGAEE---ARDAQARMEELAEELQKLMLPKDPRDGANVFLEVRAGTGGDEAAIF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY +Y+ ++GWK E+V +E + GYKE A + G GVY ++KFESG HRVQRV
Sbjct: 130 AGDLFRMYSKYADQRGWKVEMVSASEGEHGGYKEVIARVIGDGVYSRMKFESGAHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GR+HTSA +VAI+ +A+++ D+ +RNEDLRIDTYRS G+GGQH NTT+SAVR+T
Sbjct: 190 PATESQGRIHTSACTVAIMAEAEQLGDITIRNEDLRIDTYRSSGAGGQHVNTTDSAVRIT 249
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PTG+ + QDERSQH NKA+A+ +L AKLY+ +++ H ++ R +GSGDRSERI
Sbjct: 250 HLPTGVVVECQDERSQHKNKARAMSLLSAKLYDAQQNAAHAEQAAERKSLVGSGDRSERI 309
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
RTYN+PQGRV+DHR+ +T + + ++MEG ++D + ALL + + D +A+ G +
Sbjct: 310 RTYNYPQGRVSDHRINLTLYRLGELMEG-DMDELLGALLAEYQADQLAALGES 361
>gi|328952115|ref|YP_004369449.1| peptide chain release factor 1 [Desulfobacca acetoxidans DSM 11109]
gi|328452439|gb|AEB08268.1| Peptide chain release factor 1 [Desulfobacca acetoxidans DSM 11109]
Length = 357
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/343 (47%), Positives = 241/343 (70%), Gaps = 4/343 (1%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
+R+ AIE R LE +++PE + Y + +E +L + + + + ++E D +
Sbjct: 4 ERLHAIENRYLELEARLSEPETIKNQELYQQYAREHAELSPLIQIFRQHQQVERECDNNQ 63
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
+L+ + D+++ ++A EE+ + + L++ L LLPKD D ++ +LE+RAGTGGE
Sbjct: 64 ALL-KTETDEEIKELAREEIQQLKERLEHLENELRFLLLPKDPNDAKNILLEIRAGTGGE 122
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA ++F+MY R++++ GWK E++ + + G KE A ISG VY LK+ESG+H
Sbjct: 123 EAALFAAELFRMYTRFAEQHGWKVEILSHNPTGIGGLKEIIALISGQQVYSLLKYESGVH 182
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSAV+VAILP+A++VDV++ E+LRID +RS G GGQ NTT+SA
Sbjct: 183 RVQRVPTTESQGRIHTSAVTVAILPEAEDVDVQISPEELRIDVFRSSGPGGQSVNTTDSA 242
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+TH+PTGM ++ QDE+SQH NKAKALKVL A+L ++++ H ++ R Q+GSGDR
Sbjct: 243 VRITHLPTGMVVTCQDEKSQHKNKAKALKVLQARLLDIKQQEQHQKMAQDRKSQVGSGDR 302
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SERIRTYNFPQGRVTDHR+G+T + + +EG LD +DAL+
Sbjct: 303 SERIRTYNFPQGRVTDHRLGLTLYRLEAFLEG-GLDELLDALV 344
>gi|114327270|ref|YP_744427.1| peptide chain release factor 1 [Granulibacter bethesdensis CGDNIH1]
gi|119361545|sp|Q0BUJ8.1|RF1_GRABC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|114315444|gb|ABI61504.1| bacterial peptide chain release factor 1 (RF-1) [Granulibacter
bethesdensis CGDNIH1]
Length = 352
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 153/314 (48%), Positives = 226/314 (71%), Gaps = 5/314 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
++ A++EL +L + I EL ++ + ++++ D DM ++A E + ++
Sbjct: 30 FAAASRELAELEPVVARIEELWAAERGLAEAEAMLA----DPDMRELAESEAEILREKLP 85
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + +LLPKD+ADER ILE+R GG+EASLFA +F MY+RY++ +GW+FE++
Sbjct: 86 SLTREIRIALLPKDEADERSAILEIRPAAGGDEASLFAAQLFSMYQRYAEIRGWRFEILE 145
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++ L G K A I+G V+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+LP+A+
Sbjct: 146 YDDTGLGGLKGGMAEITGRSVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVLPEAE 205
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV++ DLRID YR+ G+GGQH N T SAVR+TH+P+G+ +++Q+E+SQH N+AKA+
Sbjct: 206 DVDVQVDEGDLRIDVYRASGAGGQHVNKTESAVRITHLPSGIVVAMQEEKSQHKNRAKAM 265
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K+L A+LYE +R+ +H SR+ R Q+G+GDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 266 KILKARLYEQQRAALHASRAADRRAQVGTGDRSERIRTYNFPQGRVSDHRINLTLYKIDR 325
Query: 393 MMEGENLDIFIDAL 406
+M GE LD F+DAL
Sbjct: 326 VMLGE-LDDFVDAL 338
>gi|212703639|ref|ZP_03311767.1| hypothetical protein DESPIG_01684 [Desulfovibrio piger ATCC 29098]
gi|212672934|gb|EEB33417.1| peptide chain release factor 1 [Desulfovibrio piger ATCC 29098]
Length = 356
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 237/353 (67%), Gaps = 5/353 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E++ LE + QP+ +Y K K LRD + L R+ +E++
Sbjct: 1 MFAKLEGLEKKYMELEQALAQPDVYNDQDQYRKLTKAHADLRDVVELFRRHRSLTQELEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+++ D D+ MA EE+ A E L+ + LLPKD DE++ ILE+RAGTG
Sbjct: 61 NKQLLHDS--DPDIKAMAQEEIAAAEAELPELEHKIKVLLLPKDPLDEKNTILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY++ KGWK E++ + SD GYKE ISG VY LKFE+G
Sbjct: 119 GEEAALFAADLFRMYTRYAEIKGWKVEIMSESPSDSGGYKEIICLISGDRVYSHLKFEAG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VA++P+A+EVDV +R EDLRID YR+ G+GGQH N T
Sbjct: 179 THRVQRVPATETQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTE 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG ++ QDERSQH NKA+A+KVL +++ ER R + S R Q+GSG
Sbjct: 239 SAVRITHIPTGTVVTCQDERSQHKNKARAMKVLASRILAAERERQNSELSADRKAQVGSG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
DRSERIRTYNFPQGR TDHR+ +T +++ +MEGE +F +AL + +A+
Sbjct: 299 DRSERIRTYNFPQGRCTDHRINLTLYSLDRIMEGEVEPLF-EALATAAQTEAL 350
>gi|315122704|ref|YP_004063193.1| peptide chain release factor 1 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496106|gb|ADR52705.1| peptide chain release factor 1 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 357
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/325 (50%), Positives = 226/325 (69%), Gaps = 2/325 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K +E + + I K+ E L+++I + D + D+A E+ E K
Sbjct: 32 YIKLTEEYAAISPIISKIDIYEKKKGEEQDLRTIIDDQDSDLGIRDLAKAEIGEVEKEIK 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLPKD D++ CILE+RAGTGG EA+LF D+F+MYERY+ + WK E++
Sbjct: 92 ALEYEISCLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYATYQKWKVEILS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+++D GYKE A ISG GV+ ++KFESG+HRVQRVP TE SGRVHTSA +VA+LP+A+
Sbjct: 152 SSDNDDGGYKEIVATISGNGVFYRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
E+DV + ED+RIDT R+ GSGGQH NTT+SAVR+THIPTG+ ++ E+SQH N+ +A+
Sbjct: 212 EIDVAIATEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLQAM 270
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
KVL A+LY++ER R+ RS+ R QIGSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 271 KVLRARLYDIERKRMAHERSENRKAQIGSGDRSERIRTYNFPQGRITDHRINLTLYKLEY 330
Query: 393 MMEGENLDIFIDALLLQQEMDAIAS 417
+++G LD ++ALL + I S
Sbjct: 331 VLQG-YLDEIVNALLTAHQAKMIGS 354
>gi|392940166|ref|ZP_10305810.1| LOW QUALITY PROTEIN: peptide chain release factor 1
[Thermoanaerobacter siderophilus SR4]
gi|392291916|gb|EIW00360.1| LOW QUALITY PROTEIN: peptide chain release factor 1
[Thermoanaerobacter siderophilus SR4]
Length = 356
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 242/356 (67%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + D + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVNEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S D+++ +MA EEL +++K+L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSNDEELKEMAGEELSQLEEKKKKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D++ID +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPSDIKIDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ ++ QDERSQ N+ +ALK+L AKLYEM ++ R Q+G+G
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAETRKSQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+RSERIRTYNFPQGRVTDHR+G+T + + ++++G +LD IDAL+L + + + +
Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDG-DLDEIIDALILNDQAEKLKNM 353
>gi|149185458|ref|ZP_01863774.1| protein chain release factor A [Erythrobacter sp. SD-21]
gi|148830678|gb|EDL49113.1| protein chain release factor A [Erythrobacter sp. SD-21]
Length = 355
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 162/360 (45%), Positives = 243/360 (67%), Gaps = 10/360 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
++I +R+ I R A LE + E+ +A+++ +L + +E++ ++EI
Sbjct: 1 MQIPAERLDQIAHRFAELEARMASGTLEGDEFVQASRDYAELEPVAKVAAEVKAAREEIA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVR 178
L+ ++ D +M MA EEL + +KRL + L ++LP+D AD + +LE+R
Sbjct: 61 SLEDMLA----DPEMKAMAEEELA---ELQKRLPAAERQLAIAMLPRDSADNKPAMLEIR 113
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LFA D+F+MYERY+ + GWK E V + S++ G+KE A+++G V+ KLK
Sbjct: 114 AGTGGDEAALFAGDLFRMYERYAAEMGWKVEPVSMNASEVGGFKEIVASVTGPNVFAKLK 173
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+ DEVDV+L +L+IDTYR+ G+GGQH
Sbjct: 174 FESGVHRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQLDPTELKIDTYRASGAGGQHV 233
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SA+R+TH+PTG ++ QD RSQH NK KA++VL +LY+ +R + ++ R
Sbjct: 234 NTTDSAIRITHLPTGTVVTCQDGRSQHKNKEKAMQVLRTRLYDAQREATQGAEAEARKAM 293
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYN+PQGRVTDHR+G+T + ++ G L ++AL+ + E +A+
Sbjct: 294 VGSGDRSERIRTYNYPQGRVTDHRIGLTLQKLPQIIAGPGLAELVEALIAEDEAKRLAAM 353
>gi|289577389|ref|YP_003476016.1| peptide chain release factor 1 [Thermoanaerobacter italicus Ab9]
gi|289527102|gb|ADD01454.1| peptide chain release factor 1 [Thermoanaerobacter italicus Ab9]
Length = 356
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 242/356 (67%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + + + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVGEWRKYVKEHAAIEEIVLKYREYKKVVEDINS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S++K++ +MA EEL ++++ L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSDEKELREMAEEELSHLEEKKEELLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D+RID +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIRIDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ ++ QDERSQ N+ +ALK+L AKLYEM ++ R Q+G+G
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQLQNRERALKILRAKLYEMALQEQQKEIAEARKSQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+RSERIRTYNFPQGRVTDHR+G+T + + ++++G +LD IDAL+L + + + +
Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDG-DLDEIIDALILNDQAEKLKNV 353
>gi|110833384|ref|YP_692243.1| peptide chain release factor 1 [Alcanivorax borkumensis SK2]
gi|119361504|sp|Q0VS77.1|RF1_ALCBS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|110646495|emb|CAL15971.1| peptide chain release factor 1 [Alcanivorax borkumensis SK2]
Length = 361
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 154/291 (52%), Positives = 218/291 (74%), Gaps = 8/291 (2%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D DM +M EE A D ++R+++L L K +LPKD D + LEVRAGTGG+EA++F
Sbjct: 73 DADMREMGAEE---ARDAQERMEALAAELQKLMLPKDPRDGANVFLEVRAGTGGDEAAIF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY +Y+ ++GWK E+V +E + GYKE A + G GVY ++KFESG HRVQRV
Sbjct: 130 AGDLFRMYSKYADQRGWKVEMVSASEGEHGGYKEVIARVIGDGVYSRMKFESGAHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GR+HTSA +VAI+ +A+++ D+++R EDLRIDTYRS G+GGQH NTT+SAVR+T
Sbjct: 190 PATESQGRIHTSACTVAIMAEAEDLGDIKIRTEDLRIDTYRSSGAGGQHVNTTDSAVRIT 249
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PTG+ + QDERSQH NKA+A+ +L AKLY+ +++ H ++ R +GSGDRSERI
Sbjct: 250 HLPTGVVVECQDERSQHKNKARAMSLLSAKLYDAQQNAAHAEQAAERKSLVGSGDRSERI 309
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RTYN+PQGRVTDHR+ +T + +++++EG +LD + ALL + + D +A+ G
Sbjct: 310 RTYNYPQGRVTDHRINLTLYRLNEIVEG-DLDEILGALLAEYQADQLAALG 359
>gi|407697445|ref|YP_006822233.1| peptide chain release factor 1 [Alcanivorax dieselolei B5]
gi|407254783|gb|AFT71890.1| Peptide chain release factor 1 [Alcanivorax dieselolei B5]
Length = 365
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 162/343 (47%), Positives = 233/343 (67%), Gaps = 6/343 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
L L++ P+ A + +KE +L + E RT Q+ ++ ++L + D +M
Sbjct: 19 LSGLLSDPDVIAEQKRFRAYSKEYAELEPVVQGFREYRTTQENLETARALTEDS--DPEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
M EE+ A ++L+S L +++LPKD D LE+RAGTGG+EA+LFA D+F+M
Sbjct: 77 RAMGQEEVREAQARLEQLESDLQRAMLPKDPRDNAGVYLEIRAGTGGDEAALFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY+ ++GWK E V +E + GYKE A + G GVY +LKFESG HRVQRVP TE G
Sbjct: 137 YSRYADQRGWKVETVSASEGEHGGYKEVIARVMGDGVYSRLKFESGAHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
R+HTSA +VA++ +A+E D+ +RNEDLRIDTYRS G+GGQH NTT+SAVR+TH+PTG+
Sbjct: 197 RIHTSACTVAVMAEAEEAGDIEIRNEDLRIDTYRSSGAGGQHVNTTDSAVRITHLPTGVV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ +L A+L + S ++ R +GSGDRSERIRTYNFPQ
Sbjct: 257 VECQDERSQHKNKAKAMSLLKARLLDARESASQAEQAAQRKSLVGSGDRSERIRTYNFPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GR+TDHR+ +T + +++++ G ++D +DALL + + + +A+
Sbjct: 317 GRLTDHRINLTLYRLNEIVAG-DMDEVLDALLAEHQAEQLAAL 358
>gi|148359876|ref|YP_001251083.1| peptide chain release factor 1 [Legionella pneumophila str. Corby]
gi|296107926|ref|YP_003619627.1| peptide chain release factor [Legionella pneumophila 2300/99 Alcoy]
gi|166223567|sp|A5IED7.1|RF1_LEGPC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148281649|gb|ABQ55737.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila str.
Corby]
gi|295649828|gb|ADG25675.1| peptide chain release factor [Legionella pneumophila 2300/99 Alcoy]
Length = 362
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 160/333 (48%), Positives = 224/333 (67%), Gaps = 4/333 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A ++ +KE +L + +D L L+ S+DKD+ MA EE+ +
Sbjct: 30 ADQNQFKSLSKEYAQLEPVSQCYESYLEAKNNLDSLNELLE--SDDKDLATMAEEEIDIV 87
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ + L L L+PKD DER+ LEVRAGTGG+EA++FA D+F+MY RY++ +GW+
Sbjct: 88 KKQIEELDEQLQWHLIPKDPDDERNIYLEVRAGTGGDEAAIFAGDLFRMYSRYAESQGWQ 147
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
E++ + + GYKE A ISG VY +LKFESG HRVQRVP TE GRVHTSA +VAI
Sbjct: 148 IELISASHGEHGGYKEIIAKISGQAVYSQLKFESGAHRVQRVPETESQGRVHTSACTVAI 207
Query: 268 LPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+P+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+THIPTG+ + QDERSQH
Sbjct: 208 MPEVDEINDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHK 267
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
N+AKA+ +L +L + E S+ +++ R +G+GDRSERIRTYNFPQGR+TDHR+ +T
Sbjct: 268 NRAKAMSLLKTRLLDAEVSKQKQEQAQTRKSLVGTGDRSERIRTYNFPQGRLTDHRINLT 327
Query: 387 HHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ +SD+MEG NL + ID L + + +A G
Sbjct: 328 IYQLSDIMEG-NLSLVIDPLKREYHAELLADLG 359
>gi|188580162|ref|YP_001923607.1| peptide chain release factor 1 [Methylobacterium populi BJ001]
gi|226739114|sp|B1Z914.1|RF1_METPB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|179343660|gb|ACB79072.1| peptide chain release factor 1 [Methylobacterium populi BJ001]
Length = 361
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 227/323 (70%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++EL +L + I R + + G+++LI E D +M +A EE A + ++
Sbjct: 37 SRELSELDGVVAAIRHYRAAEANLAGIRALIDEPGGDPEMRALAAEEKPEAEEALEQAHR 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD ADE+ ILE+RAGTGG+EA+LFA D+F+MY +Y++ KGW+ EV+ +E
Sbjct: 97 ALQLMLLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GY+E A + G V+ +LKFESG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+
Sbjct: 157 TVGGYREVVAEVKGRSVFSRLKFESGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDI 216
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLC 336
+ DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +Q+ERSQH N+A+A+ +L
Sbjct: 217 AINEADLKIDTMRAQGAGGQHVNKTESAIRITHMPTGVVVFVQEERSQHKNRARAMALLR 276
Query: 337 AKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEG 396
+KL++ ER+ +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++M G
Sbjct: 277 SKLFDAERTAKDSARAADRKAQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAG 336
Query: 397 ENLDIFIDALLLQQEMDAIASFG 419
LD IDAL+ + + + +A+ G
Sbjct: 337 PALDEVIDALVTEHQAELLAAEG 359
>gi|312134918|ref|YP_004002256.1| peptide chain release factor 1 [Caldicellulosiruptor owensensis OL]
gi|311774969|gb|ADQ04456.1| peptide chain release factor 1 [Caldicellulosiruptor owensensis OL]
Length = 355
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 237/347 (68%), Gaps = 8/347 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + P+ + E+ K KE L+ ++ + R ++ ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPDIISQTQEWQKLMKEHSNLQP---IVEKFREYKRILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ ++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDIDEDFEKLVKEELNWAKEQKEIVERDLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++++V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDIEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+ H PTG+ ++ QDERSQH N+ +A+K+L A+LY+ +S R Q+G
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSLQQKEIESQRRSQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+GDRSERIRTYNFPQGRVTDHR+G+T + + +++GE LD IDAL+
Sbjct: 298 TGDRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGE-LDEIIDALI 343
>gi|296775701|gb|ADH42977.1| protein chain release factor A [uncultured SAR11 cluster alpha
proteobacterium H17925_38M03]
Length = 358
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 150/330 (45%), Positives = 225/330 (68%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+V+ I + LE ++ + P ++K +KE L + E L++++
Sbjct: 6 KVMDIINKHMSLEKELSTGDIDPKLFAKKSKEYSNLGSIIDSAKSFVKFDNEKKDLENIV 65
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+ + D +M+D+A ++L ++ ++ L LLPKD+ D+++ I+E+RAGTGG EAS
Sbjct: 66 KDKTNDPEMIDLAEKDLSELFKRREKWENDLKIFLLPKDEDDDKNAIVEIRAGTGGLEAS 125
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LF D+FKMYE+ KK W E++ +++S+ G+KE +++G +Y LK+ESG+HRVQ
Sbjct: 126 LFCADLFKMYEKVCSKKKWNLEIINISKSEAGGFKEVIFSVNGNDIYSYLKYESGVHRVQ 185
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
R+P TE GRVHTSA +VA+LP+ +EVD+ ++ DLR+D +R+GG GGQ NTT+SAVR+
Sbjct: 186 RIPETETQGRVHTSAATVAVLPEVEEVDIEIKESDLRVDVFRAGGPGGQSVNTTDSAVRI 245
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIP+G+ +S QDE+SQH NKAKALK+L +++YE E+ + RS R QIGSGDRSER
Sbjct: 246 THIPSGVVVSQQDEKSQHKNKAKALKILRSRVYEAEKRKKDQERSSNRRSQIGSGDRSER 305
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGE 397
IRTYNFPQGRVTDHR+ +T H + + + G+
Sbjct: 306 IRTYNFPQGRVTDHRINLTLHKLEEFLSGD 335
>gi|409399752|ref|ZP_11249997.1| peptide chain release factor 1 [Acidocella sp. MX-AZ02]
gi|409131125|gb|EKN00843.1| peptide chain release factor 1 [Acidocella sp. MX-AZ02]
Length = 353
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/326 (48%), Positives = 227/326 (69%), Gaps = 5/326 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KEL +L + LR +K+ ++L+ D DM ++A EL +
Sbjct: 31 EFVKASKELAELGPVEEQVLALREAEKQRREAEALLA----DPDMKELAEAELHTLKAQI 86
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD+AD R ILE+R GG+EA LFA ++F Y++Y+ +GW+FEV+
Sbjct: 87 PELEMAVRLALLPKDEADARSGILEIRPAAGGDEAGLFAAELFSAYQKYAASQGWRFEVL 146
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E++L G K A A I+G V+ +LKFESG+HRVQRVP TE GR+HTS ++VA++P+A
Sbjct: 147 EYDENELGGVKGAMAEITGKSVFARLKFESGVHRVQRVPTTETQGRIHTSTITVAVMPEA 206
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVDV + DLRID YR+ G+GGQH N T SAVR+THIPTG +++Q+ERSQH N+AKA
Sbjct: 207 EEVDVDINEADLRIDVYRASGAGGQHVNKTESAVRITHIPTGTVVAMQEERSQHKNRAKA 266
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+K+L +++YE +R+ + +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+ +T H I
Sbjct: 267 MKILRSRIYEQQRAALSATRAADRKGQVGTGDRSERIRTYNFPQGRVTDHRINLTLHKID 326
Query: 392 DMMEGENLDIFIDALLLQQEMDAIAS 417
+M GE DI I+AL+ + + +A+
Sbjct: 327 RVMLGEFDDI-IEALIAEDQAARLAA 351
>gi|449104319|ref|ZP_21741059.1| peptide chain release factor 1 [Treponema denticola AL-2]
gi|449119189|ref|ZP_21755588.1| peptide chain release factor 1 [Treponema denticola H1-T]
gi|449121581|ref|ZP_21757928.1| peptide chain release factor 1 [Treponema denticola MYR-T]
gi|448950180|gb|EMB31003.1| peptide chain release factor 1 [Treponema denticola MYR-T]
gi|448951115|gb|EMB31931.1| peptide chain release factor 1 [Treponema denticola H1-T]
gi|448963338|gb|EMB44016.1| peptide chain release factor 1 [Treponema denticola AL-2]
Length = 361
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 165/346 (47%), Positives = 239/346 (69%), Gaps = 4/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DTELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ + QDE+SQ NKAKA++VL ++LY++E S+ R++ R Q+GSG
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
DRSERIRTYNFPQ RVTDHR+ +T + + +M+G +LD IDAL +
Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDSVMQG-SLDELIDALCI 344
>gi|422341219|ref|ZP_16422160.1| peptide chain release factor 1 [Treponema denticola F0402]
gi|449116740|ref|ZP_21753186.1| peptide chain release factor 1 [Treponema denticola H-22]
gi|325474790|gb|EGC77976.1| peptide chain release factor 1 [Treponema denticola F0402]
gi|448952995|gb|EMB33791.1| peptide chain release factor 1 [Treponema denticola H-22]
Length = 361
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 165/346 (47%), Positives = 239/346 (69%), Gaps = 4/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ + QDE+SQ NKAKA++VL ++LY++E S+ R++ R Q+GSG
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
DRSERIRTYNFPQ RVTDHR+ +T + + +M+G +LD IDAL +
Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDSVMQG-SLDELIDALCI 344
>gi|163850388|ref|YP_001638431.1| peptide chain release factor 1 [Methylobacterium extorquens PA1]
gi|218528948|ref|YP_002419764.1| peptide chain release factor 1 [Methylobacterium extorquens CM4]
gi|240137464|ref|YP_002961935.1| peptide chain release factor RF-1 [Methylobacterium extorquens AM1]
gi|254559642|ref|YP_003066737.1| peptide chain release factor RF-1 [Methylobacterium extorquens DM4]
gi|418059797|ref|ZP_12697735.1| Peptide chain release factor 1 [Methylobacterium extorquens DSM
13060]
gi|226739112|sp|A9W1A4.1|RF1_METEP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790888|sp|B7L246.1|RF1_METC4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|163661993|gb|ABY29360.1| peptide chain release factor 1 [Methylobacterium extorquens PA1]
gi|218521251|gb|ACK81836.1| peptide chain release factor 1 [Methylobacterium extorquens CM4]
gi|240007432|gb|ACS38658.1| peptide chain release factor RF-1 [Methylobacterium extorquens AM1]
gi|254266920|emb|CAX22719.1| peptide chain release factor RF-1 [Methylobacterium extorquens DM4]
gi|373566681|gb|EHP92672.1| Peptide chain release factor 1 [Methylobacterium extorquens DSM
13060]
Length = 361
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 157/323 (48%), Positives = 227/323 (70%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++EL +L + I R + + G++++I E D +M +A EE A + ++
Sbjct: 37 SRELSELDGVVAAIHHYRLAEANLAGIRAMIDEPGGDPEMRALAAEEKPEAEEALEQAHR 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD ADE+ ILE+RAGTGG+EA+LFA D+F+MY RY++ KGW+ EV+ +E
Sbjct: 97 ALQLILLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYARYAESKGWRVEVISESEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
GY+E A + G V+ +LKFESG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+
Sbjct: 157 TAGGYREVVAEVKGRSVFSRLKFESGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDI 216
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLC 336
+ DL+IDT R+ G+GGQH N T SA+R+THIPTG+ + +Q+ERSQH N+A+A+ +L
Sbjct: 217 VVNEADLKIDTMRAQGAGGQHVNKTESAIRITHIPTGVVVFVQEERSQHKNRARAMSLLR 276
Query: 337 AKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEG 396
+KL++ ER+ +R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++M G
Sbjct: 277 SKLFDAERTAKDSARAADRKAQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAG 336
Query: 397 ENLDIFIDALLLQQEMDAIASFG 419
+ LD IDAL+ + + + +A+ G
Sbjct: 337 QALDEVIDALVTEHQAELLAAEG 359
>gi|449105623|ref|ZP_21742325.1| peptide chain release factor 1 [Treponema denticola ASLM]
gi|451969926|ref|ZP_21923155.1| peptide chain release factor 1 [Treponema denticola US-Trep]
gi|448967006|gb|EMB47650.1| peptide chain release factor 1 [Treponema denticola ASLM]
gi|451701381|gb|EMD55853.1| peptide chain release factor 1 [Treponema denticola US-Trep]
Length = 361
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 165/346 (47%), Positives = 239/346 (69%), Gaps = 4/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ + QDE+SQ NKAKA++VL ++LY++E S+ R++ R Q+GSG
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAIRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
DRSERIRTYNFPQ RVTDHR+ +T + + +M+G +LD IDAL +
Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDSVMQG-SLDELIDALCI 344
>gi|436842689|ref|YP_007327067.1| peptide chain release factor 1 [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432171595|emb|CCO24968.1| peptide chain release factor 1 [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 356
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 233/346 (67%), Gaps = 5/346 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
IER LE + PE + Y K +L + ++ E + +++ K + +
Sbjct: 8 IERSFMDLEQELADPEVYNNQERYKKVTIAHSELGEVVNAFREYKQLASDLEDNKEMAKD 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D ++ +MA E+ + RL+ L LLPKD D ++ ILE+RAGTGGEEA+LF
Sbjct: 68 S--DPEIREMAEMEIAEIKERLPRLEDELKFLLLPKDPMDGKNIILEIRAGTGGEEAALF 125
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
D+F+MY RY+++ GWK EV+ + G+KE AA+SG +Y ++K+ESG HRVQRV
Sbjct: 126 GADLFRMYSRYAEQNGWKVEVLSSNPTGTGGFKEIIAAVSGSRIYSRMKYESGTHRVQRV 185
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSA +VAI+P+A+E+DV++RNEDLR+D +R+ G GGQ NTT+SA+R+TH
Sbjct: 186 PATETQGRIHTSAATVAIMPEAEEIDVQVRNEDLRVDVFRASGPGGQSVNTTDSAIRITH 245
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ + QDE+SQH NKAKA+KVLC++L + E+ + H ++ R Q+GSGDRSERIR
Sbjct: 246 IPTGLVVICQDEKSQHKNKAKAMKVLCSRLLQQEQDKQHEEMAEQRRAQVGSGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
TYNFPQGRVTDHR+ +T + + ++EG ++ +DAL+ + +A+
Sbjct: 306 TYNFPQGRVTDHRINLTLYKLDSVIEG-DMGELVDALVSHYQSEAL 350
>gi|145218953|ref|YP_001129662.1| peptide chain release factor 1 [Chlorobium phaeovibrioides DSM 265]
gi|189039984|sp|A4SCF1.1|RF1_PROVI RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145205117|gb|ABP36160.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium
phaeovibrioides DSM 265]
Length = 357
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 159/339 (46%), Positives = 235/339 (69%), Gaps = 5/339 (1%)
Query: 71 AIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
+I+ R LE L+ P+A+ + K NKE LR+ + +K+++ + L+
Sbjct: 7 SIKERHLDLERLLADPDAAGDQTRFRKLNKEYSDLREIVETYDRYSHIKKQLEDSRQLL- 65
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+ +D++M + EE+ + L+ + LLPKD+AD R+ ILE+RAGTGGEEA+L
Sbjct: 66 KNEQDQEMKALVEEEIEELQRQIPALEQEIKVLLLPKDEADSRNVILEIRAGTGGEEAAL 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFESGIHRVQ 247
F D+F+MY+RY++K+GW F+++ ES + G ++EA+ +I+G V+G +K+ESG+HRVQ
Sbjct: 126 FTTDLFRMYQRYAEKQGWNFQMLDYNESSVPGGFREATISITGHDVFGTMKYESGVHRVQ 185
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTSA SVA+LP+A+EVDV +R EDLR+DTYRSGG GGQ+ N +AVR+
Sbjct: 186 RVPDTETQGRIHTSAASVAVLPEAEEVDVEIRKEDLRLDTYRSGGKGGQNVNKVETAVRI 245
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTGM + Q+ERSQ NK +A+K+L AKL++++ + +R+ LR + +GDRS +
Sbjct: 246 THMPTGMVAACQEERSQLQNKERAMKMLRAKLFDIQLAEQQQARADLRRTMVATGDRSAK 305
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
IRTYN+PQ RVTDHR+G T HA+ M+GE + IDAL
Sbjct: 306 IRTYNYPQSRVTDHRIGFTTHALPQFMQGE-IGELIDAL 343
>gi|407786207|ref|ZP_11133353.1| peptide chain release factor 1 [Celeribacter baekdonensis B30]
gi|407201939|gb|EKE71935.1| peptide chain release factor 1 [Celeribacter baekdonensis B30]
Length = 349
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/315 (49%), Positives = 220/315 (69%), Gaps = 8/315 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+L+ +I +SL+ + SE D DM +A EE+ + + L +LLP
Sbjct: 36 SDLKPVVDQIHAYQSLLSDLSEAEEMLLDPDMRALALEEIPVLKARLPLAEEALQIALLP 95
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
KD AD I+E+R GTGG+EA+LFA D+ +MY+RY++ +GW+FE++ + ES+L G KE
Sbjct: 96 KDSADTGSAIVEIRPGTGGDEAALFAGDLLRMYQRYAEARGWRFEIIELQESELGGVKEV 155
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A I+G GV+ ++KFESG+HRVQRVP TE GRVHTSA +VA+LP+A +VD+ + D+R
Sbjct: 156 IANIAGQGVFARMKFESGVHRVQRVPTTESGGRVHTSAATVAVLPEAQDVDIEINANDIR 215
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
IDT RS G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH N+ A+ VL A+LY+ ER
Sbjct: 216 IDTMRSSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQHRNREIAMNVLRARLYDAER 274
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
++H +RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +M G +LD ID
Sbjct: 275 QKLHDARSSERKSQVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDAVMNG-DLDEVID 333
Query: 405 ALLLQQEMDAIASFG 419
AL+ + +A G
Sbjct: 334 ALISDHQAQLMAEMG 348
>gi|125975076|ref|YP_001038986.1| peptide chain release factor 1 [Clostridium thermocellum ATCC
27405]
gi|256003270|ref|ZP_05428262.1| peptide chain release factor 1 [Clostridium thermocellum DSM 2360]
gi|281418506|ref|ZP_06249525.1| peptide chain release factor 1 [Clostridium thermocellum JW20]
gi|385777561|ref|YP_005686726.1| peptide chain release factor 1 [Clostridium thermocellum DSM 1313]
gi|419722892|ref|ZP_14250029.1| Peptide chain release factor 1 [Clostridium thermocellum AD2]
gi|419726392|ref|ZP_14253415.1| Peptide chain release factor 1 [Clostridium thermocellum YS]
gi|166223552|sp|A3DIL4.1|RF1_CLOTH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|125715301|gb|ABN53793.1| peptide chain release factor 1 [Clostridium thermocellum ATCC
27405]
gi|255992961|gb|EEU03051.1| peptide chain release factor 1 [Clostridium thermocellum DSM 2360]
gi|281407590|gb|EFB37849.1| peptide chain release factor 1 [Clostridium thermocellum JW20]
gi|316939241|gb|ADU73275.1| peptide chain release factor 1 [Clostridium thermocellum DSM 1313]
gi|380770444|gb|EIC04341.1| Peptide chain release factor 1 [Clostridium thermocellum YS]
gi|380781272|gb|EIC10933.1| Peptide chain release factor 1 [Clostridium thermocellum AD2]
Length = 360
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 160/324 (49%), Positives = 225/324 (69%), Gaps = 3/324 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P A+ EY K KE +L + +E + KEI
Sbjct: 1 MFEKFQAAENRYDEINHRLSDPAVIANQDEYKKLMKEHAELEVLVTKYNEYKKLTKEIAD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ E DK+ +M EL A ++ + L+ + LLPKD DER+ I+E+R G G
Sbjct: 61 AKEMLNE-KLDKEFREMVETELKEAQEKLEVLKKEMKILLLPKDPNDERNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY RY+++ GWK E++ +++ G+KE +I G G Y +LKFESG
Sbjct: 120 GDEAALFAGDLFRMYTRYAERNGWKTEILDSNPTEIGGFKEVVFSIEGNGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE +GRVHTS V+VA+LP+A+E+DV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRVPVTEANGRVHTSTVTVAVLPEAEEIDVEINPNDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SA+R+TH+PTG+ + QD+RSQH NK KA+KVL +KLYEM R + H ++ R Q+G+G
Sbjct: 240 SAIRITHLPTGLVVCCQDQRSQHKNKEKAMKVLRSKLYEMAREQQHNEIAQERKSQVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGIT 386
DRSERIRTYNFPQGRVTDHR+G+T
Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLT 323
>gi|42527989|ref|NP_973087.1| peptide chain release factor 1 [Treponema denticola ATCC 35405]
gi|449111028|ref|ZP_21747627.1| peptide chain release factor 1 [Treponema denticola ATCC 33521]
gi|449114156|ref|ZP_21750636.1| peptide chain release factor 1 [Treponema denticola ATCC 35404]
gi|81570139|sp|Q73JU6.1|RF1_TREDE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|41819034|gb|AAS13006.1| peptide chain release factor 1 [Treponema denticola ATCC 35405]
gi|448957153|gb|EMB37905.1| peptide chain release factor 1 [Treponema denticola ATCC 35404]
gi|448959291|gb|EMB40012.1| peptide chain release factor 1 [Treponema denticola ATCC 33521]
Length = 361
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 165/346 (47%), Positives = 239/346 (69%), Gaps = 4/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ + QDE+SQ NKAKA++VL ++LY++E S+ R++ R Q+GSG
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
DRSERIRTYNFPQ RVTDHR+ +T + + +M+G +LD IDAL +
Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDAVMQG-SLDELIDALCI 344
>gi|52842546|ref|YP_096345.1| peptide chain release factor 1 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54295177|ref|YP_127592.1| peptide chain release factor 1 [Legionella pneumophila str. Lens]
gi|54298226|ref|YP_124595.1| peptide chain release factor 1 [Legionella pneumophila str. Paris]
gi|378778233|ref|YP_005186672.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|397664775|ref|YP_006506313.1| peptide chain release factor RF-1 [Legionella pneumophila subsp.
pneumophila]
gi|397667997|ref|YP_006509534.1| peptide chain release factor RF-1 [Legionella pneumophila subsp.
pneumophila]
gi|61214584|sp|Q5WUB1.1|RF1_LEGPL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|61214585|sp|Q5X2V3.1|RF1_LEGPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|61214588|sp|Q5ZT29.1|RF1_LEGPH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|52629657|gb|AAU28398.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|53752011|emb|CAH13437.1| peptide chain release factor 1 [Legionella pneumophila str. Paris]
gi|53755009|emb|CAH16497.1| peptide chain release factor 1 [Legionella pneumophila str. Lens]
gi|307611181|emb|CBX00825.1| peptide chain release factor 1 [Legionella pneumophila 130b]
gi|364509049|gb|AEW52573.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|395128186|emb|CCD06391.1| peptide chain release factor RF-1 [Legionella pneumophila subsp.
pneumophila]
gi|395131408|emb|CCD09676.1| peptide chain release factor RF-1 [Legionella pneumophila subsp.
pneumophila]
Length = 362
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/333 (48%), Positives = 223/333 (66%), Gaps = 4/333 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A ++ +KE +L + +D L L+ S+DKD+ MA EE+
Sbjct: 30 ADQNQFKSLSKEYAQLEPVSQCYESYLEAKNNLDSLNELLE--SDDKDLATMAEEEIDTV 87
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ + L L L+PKD DER+ LEVRAGTGG+EA++FA D+F+MY RY++ +GW+
Sbjct: 88 KKQIEELDEQLQWHLIPKDPDDERNIYLEVRAGTGGDEAAIFAGDLFRMYSRYAESQGWQ 147
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
E++ + + GYKE A ISG VY +LKFESG HRVQRVP TE GRVHTSA +VAI
Sbjct: 148 IELISASHGEHGGYKEIIAKISGQAVYSQLKFESGAHRVQRVPETESQGRVHTSACTVAI 207
Query: 268 LPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+P+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+THIPTG+ + QDERSQH
Sbjct: 208 MPEVDEINDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHK 267
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
N+AKA+ +L +L + E S+ +++ R +G+GDRSERIRTYNFPQGR+TDHR+ +T
Sbjct: 268 NRAKAMSLLKTRLLDAEVSKQKQEQAQTRKSLVGTGDRSERIRTYNFPQGRLTDHRINLT 327
Query: 387 HHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ +SD+MEG NL + ID L + + +A G
Sbjct: 328 IYQLSDIMEG-NLSLVIDPLKREYHAELLADLG 359
>gi|433656140|ref|YP_007299848.1| peptide chain release factor 1 [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433294329|gb|AGB20151.1| peptide chain release factor 1 [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 353
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 171/356 (48%), Positives = 239/356 (67%), Gaps = 6/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ IE R L ++ PEA E+ K KE L + ++ + R +K +D
Sbjct: 1 MIDKLKTIEDRYVELSQKLSDPEAMKDMDEWKKMAKEHASLEE---IVQKYREYKKVLDD 57
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+KS D D+ DMA EEL ++E +L + + LLPKD DE+D I+E+RAG G
Sbjct: 58 IKSTKEIIEMDDDLKDMAQEELKSLEEKENKLLNEIKLLLLPKDPNDEKDVIMEIRAGAG 117
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KK WK+E++ ++L G+KE +I+G G Y +LKFESG
Sbjct: 118 GEEAALFAYDLFRMYTMYAEKKHWKYEIMSSNATELGGFKEVIFSIAGKGAYSRLKFESG 177
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+ ++VDV + D++ID +RSGG GGQ NTT+
Sbjct: 178 VHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDVEINPNDIKIDVFRSGGHGGQSVNTTD 237
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ IS QDERSQ N+ +A+K+L AKLYEM R S R Q+G+G
Sbjct: 238 SAVRLTHIPTGIVISCQDERSQLQNRERAMKILRAKLYEMAREEKEKEISMTRKLQVGTG 297
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
DRSERIRTYNFPQGRVTDHR+G+T + + +++G +LD IDALL + + + + S
Sbjct: 298 DRSERIRTYNFPQGRVTDHRIGLTLYKLQMVLDG-DLDEIIDALLAEDQAERLESM 352
>gi|94986447|ref|YP_594380.1| peptide chain release factor 1 [Lawsonia intracellularis
PHE/MN1-00]
gi|442555263|ref|YP_007365088.1| peptide chain release factor 1 [Lawsonia intracellularis N343]
gi|119361555|sp|Q1MSG7.1|RF1_LAWIP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|94730696|emb|CAJ54058.1| Protein chain release factor A [Lawsonia intracellularis
PHE/MN1-00]
gi|441492710|gb|AGC49404.1| peptide chain release factor 1 [Lawsonia intracellularis N343]
Length = 359
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 154/283 (54%), Positives = 209/283 (73%), Gaps = 1/283 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D D+ +MA EE+ E L+ L LLPKD DE++ +LE+RAGTGGEEA+LFA D
Sbjct: 69 DPDIQEMALEEIKKLELELTHLEYELKILLLPKDPLDEKNILLEIRAGTGGEEAALFAAD 128
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++K WK E++ ++SD G+KE A I G VY +LKFESG HRVQRVP T
Sbjct: 129 LFRMYCRYAEKMHWKVEIMSQSDSDTGGFKEIIALIQGDNVYSRLKFESGTHRVQRVPTT 188
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E GR+HTSA +VA+LP+A++VD+ +R E+LR D +RS G GGQ NTT+SAVRVTHIPT
Sbjct: 189 ESQGRIHTSAATVAVLPEAEDVDIEIRPEELRFDVFRSSGPGGQSVNTTDSAVRVTHIPT 248
Query: 313 GMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYN 372
G+ ++ QDE+SQH NKAKALKVL ++L ++++ + + ++ R +GSGDRSERIRTYN
Sbjct: 249 GIVVTCQDEKSQHKNKAKALKVLSSRLLQIKQEQQEIEQADARRALVGSGDRSERIRTYN 308
Query: 373 FPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
FPQGRVTDHR+ +T +++ +MEGE + FIDAL + +A+
Sbjct: 309 FPQGRVTDHRINLTLYSLIKVMEGE-IQEFIDALSTHAQTEAL 350
>gi|354595368|ref|ZP_09013401.1| peptide chain release factor 1 [Commensalibacter intestini A911]
gi|353671278|gb|EHD12984.1| peptide chain release factor 1 [Commensalibacter intestini A911]
Length = 360
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 163/350 (46%), Positives = 242/350 (69%), Gaps = 6/350 (1%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
R+ I RS L+++++ E S E+ A++E L + L+ LR ++E + ++
Sbjct: 13 RLDKIVARSEELQHILS-TEISGDEFMDASREYADLNTIVELVHALRNAEEETKAAEEML 71
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+D +M D+A EL ++ +L+ + S+LPKD ADE + ILE+R GG+EA
Sbjct: 72 ----QDPEMKDLAEAELEALNEKIPQLRHDIRLSMLPKDKADEGNAILEIRPAAGGDEAG 127
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
+FA ++F Y+RYS GW+FEV+ ++ + G K A A+ISG V+ +LK+ESG+HRVQ
Sbjct: 128 IFAAELFGAYQRYSDMNGWRFEVMEYDDTGVGGIKGAMASISGNNVFARLKYESGVHRVQ 187
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTS V+VA+LP+A+EVDV + +DLRID YR+ G+GGQH N T SAVR+
Sbjct: 188 RVPATESQGRIHTSTVTVAVLPEAEEVDVDIDEKDLRIDVYRASGAGGQHVNKTESAVRI 247
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+P+G+ +++Q+E+SQH NKAKA+K+L A+LYE +R+ +H R+ R Q+G+GDRSER
Sbjct: 248 THMPSGVVVAMQEEKSQHKNKAKAMKILRARLYEQQRASLHADRAADRRSQVGTGDRSER 307
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
IRTYNFPQGRVTDHR+ +T H I +M GE LD +D+L +++ +A+
Sbjct: 308 IRTYNFPQGRVTDHRINLTLHKIDRIMLGE-LDEVVDSLAQEEQSRLLAA 356
>gi|294678208|ref|YP_003578823.1| peptide chain release factor 1 [Rhodobacter capsulatus SB 1003]
gi|294477028|gb|ADE86416.1| peptide chain release factor 1 [Rhodobacter capsulatus SB 1003]
Length = 351
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 162/329 (49%), Positives = 228/329 (69%), Gaps = 6/329 (1%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
PAE + ++E LR +++E+ ++ +D L S D +M +A EEL
Sbjct: 27 PAEIATLSREYSDLRP---VVTEIAAYRQSLDDLAEAEGWLS-DPEMKTLAEEELPRLKA 82
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
++ L +LLPKD AD R ILE+R GTGGEEA+LFA D+++MYER+++K GW+FE
Sbjct: 83 RIPAMEQALRLALLPKDAADARPAILEIRPGTGGEEAALFAHDLWRMYERHAEKMGWRFE 142
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
+ T ++L G KEA A I G GV+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP
Sbjct: 143 RLEFTATELGGVKEAMARIEGEGVFARLKYESGVHRVQRVPETEAGGRIHTSAATVAVLP 202
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
+A+EVD+ + D+RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+A
Sbjct: 203 EAEEVDIDIPAADIRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIIVT-SSEKSQHQNRA 261
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
A+ VL A+LYE+ER R+ R++ R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T +A
Sbjct: 262 NAMAVLRARLYEIERERLATERAENRRSQVGSGDRSERIRTYNFPQGRMTDHRINLTLYA 321
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAIASF 418
+ ++ G +L IDAL+ + +A
Sbjct: 322 LPQILAG-DLGEVIDALVAHDQAAKLAEM 349
>gi|449108520|ref|ZP_21745162.1| peptide chain release factor 1 [Treponema denticola ATCC 33520]
gi|448961321|gb|EMB42026.1| peptide chain release factor 1 [Treponema denticola ATCC 33520]
Length = 361
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 165/346 (47%), Positives = 238/346 (68%), Gaps = 4/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DTELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ + QDE+SQ NKAKA++VL ++LY++E S+ R++ R Q+GSG
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
DRSERIRTYNFPQ RVTDHR+ +T + + +M+G LD IDAL +
Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDAVMQG-ALDELIDALCI 344
>gi|258542227|ref|YP_003187660.1| peptide chain release factor 1 [Acetobacter pasteurianus IFO
3283-01]
gi|384042148|ref|YP_005480892.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-12]
gi|384050665|ref|YP_005477728.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-03]
gi|384053773|ref|YP_005486867.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-07]
gi|384057007|ref|YP_005489674.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-22]
gi|384059648|ref|YP_005498776.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-26]
gi|384062940|ref|YP_005483582.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-32]
gi|384119016|ref|YP_005501640.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256633305|dbj|BAH99280.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-01]
gi|256636364|dbj|BAI02333.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-03]
gi|256639417|dbj|BAI05379.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-07]
gi|256642473|dbj|BAI08428.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-22]
gi|256645528|dbj|BAI11476.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-26]
gi|256648581|dbj|BAI14522.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-32]
gi|256651634|dbj|BAI17568.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654625|dbj|BAI20552.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-12]
Length = 352
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/327 (48%), Positives = 230/327 (70%), Gaps = 5/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+++A++E ++ + I+ LR + I + L+ D +M ++A EL ++
Sbjct: 30 FTQASREYAEIEPVVARINALREVEDGIQQAEQLLA----DPEMKELAEAELAELREQLP 85
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+LQ + SLLPKD AD R ILEVR GG+EA LFA ++F MY RY+ GW+F V+
Sbjct: 86 QLQKDVRLSLLPKDVADARSAILEVRPAAGGDEAGLFAAELFDMYRRYADLNGWRFTVMD 145
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
ES+L G +E A I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+LP+A+
Sbjct: 146 YDESELGGLREGIAEINGKGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVLPEAE 205
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV + DLR+D +R+ G+GGQH N T SAVR+TH+P+G+ +S+Q+E+SQH N+AKA+
Sbjct: 206 EVDVEVNETDLRVDVFRASGAGGQHVNKTESAVRLTHMPSGIVVSMQEEKSQHKNRAKAM 265
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K+L A+LYE ER++ H +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+ +T + I
Sbjct: 266 KILRARLYERERAQAHANRAADRRSQVGTGDRSERIRTYNFPQGRVTDHRINLTLYKIDR 325
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
+M GE LD F+DAL +++ +A+ G
Sbjct: 326 VMLGE-LDEFVDALTQEEQAALLAAEG 351
>gi|340029419|ref|ZP_08665482.1| peptide chain release factor 1 [Paracoccus sp. TRP]
Length = 352
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/350 (47%), Positives = 237/350 (67%), Gaps = 21/350 (6%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
+ + R+ I R LE +N A P E + ++E +L+ + I E R Q I
Sbjct: 2 LPQDRLNQIVERFEYLEARLNAGPA-PDEIAAISREYAELKPVVAQIGEWRAAQDGIREA 60
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK-------SLLPKDDADERDCILE 176
++++ D +M ++A +EL RL+SLL +LLP+D AD R ILE
Sbjct: 61 QAMLA----DPEMRELAEDELS-------RLRSLLPDLEHALRIALLPRDAADARPAILE 109
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+R GTGGEEA+LFA D+ MY R+++ +GW+F+++ + ESDL G +EA A I G GV+ +
Sbjct: 110 IRPGTGGEEAALFAADLLNMYRRFAESQGWQFQLLELAESDLGGVREAVARIEGEGVFAR 169
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A EVD+ + D+RIDT R+ G+GGQ
Sbjct: 170 LKYESGVHRVQRVPETESGGRIHTSAATVAVLPEAQEVDIEIPANDIRIDTMRASGAGGQ 229
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+TH+PTG+ ++ E+SQH N+A A+ VL A+LY++ERSR R+ R
Sbjct: 230 HVNTTDSAVRITHLPTGIVVT-SSEKSQHQNRANAMAVLRARLYDLERSRADAERAADRK 288
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
Q+GSGDRSERIRTYNFPQGR+TDHR+G+T +++ +++G +L +DAL
Sbjct: 289 SQVGSGDRSERIRTYNFPQGRMTDHRIGLTLYSLDRIIQG-DLGEVVDAL 337
>gi|313672261|ref|YP_004050372.1| peptide chain release factor 1 [Calditerrivibrio nitroreducens DSM
19672]
gi|312939017|gb|ADR18209.1| bacterial peptide chain release factor 1 (bRF-1) [Calditerrivibrio
nitroreducens DSM 19672]
Length = 356
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/327 (48%), Positives = 229/327 (70%), Gaps = 2/327 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +KE L+ + E + Q+ I ++++ + DKD++++A EL ++ +
Sbjct: 31 YQQLSKEHSDLKPIVEKYLEYKDVQRSIKEAEAILKDGG-DKDLIELAEIELAEGKEKLE 89
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DE++ +E+RAGTGGEE++LFA D+ +MY RY++K GWK E++
Sbjct: 90 KISEELKILLLPKDPFDEKNIYIEIRAGTGGEESALFAADLLRMYIRYAEKCGWKTEIID 149
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E+ + GYKE + G Y KLK+E+G HRVQR+P TE SGR+HTSA +VA++P+AD
Sbjct: 150 ANETGMGGYKEVILLVKGKNAYSKLKYEAGGHRVQRIPETESSGRIHTSACTVAVIPEAD 209
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VDV + +DLRID YRS G+GGQH NTT+SAVR+THIPTG+ +S QDERSQ NK KA+
Sbjct: 210 DVDVHIDPKDLRIDVYRSSGAGGQHVNTTDSAVRITHIPTGIVVSCQDERSQIKNKEKAM 269
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K+L +K++EME R +++ R +Q+GSGDRSERIRTYNFPQ R+TDHR+ +T + +
Sbjct: 270 KLLKSKIFEMELERQRTEQAENRKQQVGSGDRSERIRTYNFPQNRLTDHRINLTVYNLDM 329
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
+MEGE LD IDAL+ + + + + G
Sbjct: 330 VMEGE-LDEIIDALITYDQAEKLKNIG 355
>gi|329888688|ref|ZP_08267286.1| peptide chain release factor 1 [Brevundimonas diminuta ATCC 11568]
gi|328847244|gb|EGF96806.1| peptide chain release factor 1 [Brevundimonas diminuta ATCC 11568]
Length = 345
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 228/325 (70%), Gaps = 9/325 (2%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + D++ ++ R E D LK++ + D +M +A++EL +
Sbjct: 25 SKEHAELKPVADAVQALARARA---EADDLKAM----AADPEMAALASDELDALTERLPT 77
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L P+D + +LEVRAGTGG+EA+LFA D+F+MY RY+Q +GW+ E+
Sbjct: 78 LEREVALLLAPRDADENASAVLEVRAGTGGDEAALFAGDLFRMYSRYAQSRGWRVEIDSA 137
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E D G+KE A +SG GV+G+LKFESG+HRVQRVP TE GR+HTSA ++A+LP+ ++
Sbjct: 138 AEGDAGGFKEIIATVSGEGVFGRLKFESGVHRVQRVPTTEAGGRIHTSAATIAVLPEVED 197
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V++ + ++D+RIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH+N+ KA+K
Sbjct: 198 VEIEILDKDIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGI-VATSSEKSQHVNRDKAMK 256
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
L +LY+M+R +RS R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T H++ +
Sbjct: 257 NLRVRLYDMQRQAKDAARSDARKSQVGSGDRSERIRTYNFPQGRVTDHRIGLTLHSLPQI 316
Query: 394 MEGENLDIFIDALLLQQEMDAIASF 418
+EG +LD ++AL+ + + +A
Sbjct: 317 LEG-DLDPMLNALIAEDQAARLADL 340
>gi|317052432|ref|YP_004113548.1| peptide chain release factor 1 [Desulfurispirillum indicum S5]
gi|316947516|gb|ADU66992.1| peptide chain release factor 1 [Desulfurispirillum indicum S5]
Length = 355
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/344 (48%), Positives = 239/344 (69%), Gaps = 4/344 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE R L ++ P A+ +A +EL +LR+ + + +T ++E+
Sbjct: 1 MLEKLQDIEDRYELLSAELSHPGATADTQRLQQATRELSELREVVEAFQQFKTVRRELAD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ ++ +D+++ +M +E+ +E++L+ L + LLP+D D ++ ILE+RAGTG
Sbjct: 61 NQEMLT-SEKDRELREMIQQEIQSLRHQEQQLEDTLTELLLPRDPNDTKNIILEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY+ ++GWK EV+ V E+ G++E + I G VY +LKFESG
Sbjct: 120 GEEAALFATDLFRMYSRYADERGWKVEVLSVNETGNGGFREIISMIEGRNVYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE SGR+HTSAV+VA+LP+A+EVD+ + DLRID YRS G+GGQH NTT+
Sbjct: 180 THRVQRVPQTESSGRIHTSAVTVAVLPEAEEVDIDINPADLRIDVYRSSGAGGQHVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG++++ Q+ RSQH NK KAL +L ++L + + RS+ R Q+GSG
Sbjct: 240 SAVRVTHIPTGVSVACQEGRSQHKNKEKALSILRSRLLDHAVQQSDSQRSQDRKLQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
DRSERIRTYNFPQGRVTDHRV +T H + ++EG +LD ID L
Sbjct: 300 DRSERIRTYNFPQGRVTDHRVNLTLHRLEQVLEG-DLDEVIDTL 342
>gi|126725348|ref|ZP_01741190.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2150]
gi|126704552|gb|EBA03643.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2150]
Length = 421
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 180/403 (44%), Positives = 254/403 (63%), Gaps = 35/403 (8%)
Query: 11 HLGALRQLESSSSISH-----RNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIM 65
HLGA +++ S I+ ++ + H VQ A A P M+ D + +
Sbjct: 33 HLGAEKRMFHSKMIASMPEITKSQICHLTLAVQSAIADP-----------MVPMDKLYQI 81
Query: 66 EQRVLAIERRSACLE--NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
R +E + A E N+V E S+ EL+ + D I +T ++ID
Sbjct: 82 TARFEFLEAKLASGETDNIV--------ELSREYSELKPVADQ---IMAFQTLVQDIDAA 130
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++++ +D +M ++A EEL D ++ + LLPKD AD R I+E+R GTGG
Sbjct: 131 EAML----DDPEMRELAAEELKELRDSLPDAENAIKLVLLPKDTADARPAIIEIRPGTGG 186
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+ +MY+RY++ GWKFE++ S+L G KE A I G V+GKLKFESG+
Sbjct: 187 DEAALFAGDLLRMYQRYAESNGWKFEIIEEQVSELGGIKEIIANIKGTNVFGKLKFESGV 246
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + DLRIDT R+ G+GGQH NTT+S
Sbjct: 247 HRVQRVPTTESGGRIHTSAATVAVLPEAEEVDLDIPASDLRIDTMRASGAGGQHVNTTDS 306
Query: 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGD 363
AVR+TH+PTGM I + E+SQH N+ A++V+ ++LYEMER ++ R+ R Q+GSGD
Sbjct: 307 AVRITHLPTGM-IVVSMEKSQHRNREIAMQVMRSRLYEMERQKVADERAADRKSQVGSGD 365
Query: 364 RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
RSERIRTYNFPQGR+TDHR+ +T + + +M GE LD IDAL
Sbjct: 366 RSERIRTYNFPQGRMTDHRINLTLYKLDQVMSGE-LDEIIDAL 407
>gi|449124523|ref|ZP_21760842.1| peptide chain release factor 1 [Treponema denticola OTK]
gi|449129526|ref|ZP_21765756.1| peptide chain release factor 1 [Treponema denticola SP37]
gi|448942854|gb|EMB23748.1| peptide chain release factor 1 [Treponema denticola OTK]
gi|448945574|gb|EMB26444.1| peptide chain release factor 1 [Treponema denticola SP37]
Length = 361
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/346 (47%), Positives = 237/346 (68%), Gaps = 4/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRNRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ + QDE+SQ NKAKA++VL ++LY++E S+ R++ R Q+GSG
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
DRSERIRTYNFPQ RVTDHR+ +T + + +M+G LD IDAL +
Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDSVMQG-ALDELIDALCI 344
>gi|149204050|ref|ZP_01881018.1| peptide chain release factor 1 [Roseovarius sp. TM1035]
gi|149142492|gb|EDM30537.1| peptide chain release factor 1 [Roseovarius sp. TM1035]
Length = 417
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 153/316 (48%), Positives = 223/316 (70%), Gaps = 6/316 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+ ++ +E +LR + I R ++DG ++++ D +M D+A EE+ +
Sbjct: 95 GDIARLGREYSELRPVVEEIRAYRLAVNDLDGARAMLA----DPEMRDLAREEVAVLEAR 150
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
++ L +LLP+D+AD R ILE+R GTGGEEA+LF D+ +MY+RYS+ +GW FEV
Sbjct: 151 LPEMEQRLQLALLPRDEADARPAILEIRPGTGGEEAALFGADLMRMYQRYSEARGWSFEV 210
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ +S+L G +E I G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 211 IEEQQSELGGIRELVVRIGGEGVFARLKFESGVHRVQRVPETESGGRIHTSAATVAVLPE 270
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A++VD+++ DLRIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+
Sbjct: 271 AEDVDIQINANDLRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQHRNREI 329
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A++VL +LY++ER+R+ RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 330 AMQVLKTRLYDLERNRVDSERSANRAAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYKL 389
Query: 391 SDMMEGENLDIFIDAL 406
++ G +LD IDAL
Sbjct: 390 EQVL-GGDLDEVIDAL 404
>gi|301094068|ref|XP_002997878.1| peptide chain release factor 1 [Phytophthora infestans T30-4]
gi|262109801|gb|EEY67853.1| peptide chain release factor 1 [Phytophthora infestans T30-4]
Length = 366
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/318 (49%), Positives = 232/318 (72%), Gaps = 7/318 (2%)
Query: 99 ELRKLRDSMHLISELRTKQKEIDGLKSLIYEC--SEDKDMLD---MATEELCLAIDEEKR 153
E+ +L + + EL++++K ++ L +I E S++ D L+ MA EE ++
Sbjct: 41 EMAELEPKVIAVRELQSQEKAVEELDEMINEQADSDEPDALELRHMAEEERRELLEAIIN 100
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ +++ +LP+D+AD++ ILE+RAG+GG+EA LFA D+ KMY++ + KGWKFE++ +
Sbjct: 101 LEGEVVRLMLPRDEADDKSSILEIRAGSGGDEACLFAGDILKMYQKVALAKGWKFELMSI 160
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+DL G KE +++G G YG++KFESG+HRVQRVP+ + RVHTSAVSV +LP+A+E
Sbjct: 161 SETDLGGVKECVCSLTGRGAYGRMKFESGVHRVQRVPVNDV--RVHTSAVSVVVLPEAEE 218
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V + +DLRID YR+ G+GGQH NTT SAVR+THIPTG+ ++QDERSQH NKAKALK
Sbjct: 219 VEVEIDPKDLRIDVYRASGAGGQHVNTTESAVRITHIPTGIVAAVQDERSQHQNKAKALK 278
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A++++ R + R +R+ Q+GSGDRSER+RTYNFPQ RV+DHRV +T I M
Sbjct: 279 ILRARVFDGIRRKRDAERQTMRNSQVGSGDRSERVRTYNFPQSRVSDHRVNVTVFGIERM 338
Query: 394 MEGENLDIFIDALLLQQE 411
+ GE LD +DAL++ ++
Sbjct: 339 LNGELLDEIVDALVVDEQ 356
>gi|327399685|ref|YP_004340554.1| peptide chain release factor 1 [Hippea maritima DSM 10411]
gi|327182314|gb|AEA34495.1| Peptide chain release factor 1 [Hippea maritima DSM 10411]
Length = 354
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 150/258 (58%), Positives = 195/258 (75%), Gaps = 1/258 (0%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD+AD+RD ILE+RAGTGGEEA+LFA D+F+MY RY++ KG+K EV+ + SD G
Sbjct: 97 LLPKDEADDRDVILEIRAGTGGEEAALFAADLFRMYSRYAENKGFKVEVLSKSLSDTGGI 156
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE A I G G Y K ESG HRVQR+P+TE GR+HTSA +VA+LP+A+ VDV ++ E
Sbjct: 157 KEIIAEIKGKGAYHLFKHESGTHRVQRIPITESQGRIHTSAATVAVLPEAENVDVEIKPE 216
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
DLRID +R+ G GGQH NTT+SAVR+TH+PTGM +S QDE+SQ NK KALK+L ++LY+
Sbjct: 217 DLRIDVFRASGHGGQHVNTTDSAVRITHLPTGMVVSCQDEKSQLKNKEKALKILKSRLYD 276
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
R + R+K R QIGSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD
Sbjct: 277 FYRRKKDEERAKERKSQIGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDSIMEG-DLDE 335
Query: 402 FIDALLLQQEMDAIASFG 419
I+AL++ ++ + G
Sbjct: 336 LIEALIVDEQARKLKESG 353
>gi|421852079|ref|ZP_16284770.1| translation peptide chain release factor 1 [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371479770|dbj|GAB29973.1| translation peptide chain release factor 1 [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 352
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/327 (48%), Positives = 230/327 (70%), Gaps = 5/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+++A++E ++ + I+ LR + I + L+ D +M ++A EL ++
Sbjct: 30 FTQASREYAEIEPVVARINALRGVEDGIQQAEQLLA----DPEMKELAEAELAELREQLP 85
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+LQ + SLLPKD AD R ILEVR GG+EA LFA ++F MY RY+ GW+F V+
Sbjct: 86 QLQKDVRLSLLPKDVADARSAILEVRPAAGGDEAGLFAAELFDMYRRYADLNGWRFTVMD 145
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
ES+L G +E A I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+LP+A+
Sbjct: 146 YDESELGGLREGIAEINGKGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVLPEAE 205
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV + DLR+D +R+ G+GGQH N T SAVR+TH+P+G+ +S+Q+E+SQH N+AKA+
Sbjct: 206 EVDVDINETDLRVDVFRASGAGGQHVNKTESAVRLTHMPSGIVVSMQEEKSQHKNRAKAM 265
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
K+L A+LYE ER++ H +R+ R Q+G+GDRSERIRTYNFPQGRVTDHR+ +T + I
Sbjct: 266 KILRARLYERERAQAHANRAADRRSQVGTGDRSERIRTYNFPQGRVTDHRINLTLYKIDR 325
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
+M GE LD F+DAL +++ +A+ G
Sbjct: 326 VMLGE-LDEFVDALTQEEQAALLAAEG 351
>gi|188996904|ref|YP_001931155.1| peptide chain release factor 1 [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931971|gb|ACD66601.1| peptide chain release factor 1 [Sulfurihydrogenibium sp. YO3AOP1]
Length = 360
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 251/354 (70%), Gaps = 12/354 (3%)
Query: 71 AIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
+IE + LE L+ PE ++ KE ++L + ++L +E + ++I+ +K L+
Sbjct: 11 SIEEKVKKLEELMADPEVLKDQSKIQSIAKEHKELSEILNLYNEYKKVSRQIEEVKQLLN 70
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+D D+ ++A EEL +++ L+ + +LLPKD DE++ ILE+R G GG+EASL
Sbjct: 71 STPDD-DLRELAEEELESLKKQQEDLEKKIEIALLPKDPNDEKNVILEIRQGAGGDEASL 129
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MY+RY+++ GWK E++ + ++ G KE A I G G Y +LK+ESG+HRVQR
Sbjct: 130 FAAELFRMYQRYAERHGWKTEILSLHPTEKGGIKEVIALIKGKGAYSRLKYESGVHRVQR 189
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE SGR+HTS V+VA+LP+A+EVD+ ++ E+L+I+T R+GG+GGQH NTT+SAVR+T
Sbjct: 190 VPETESSGRIHTSTVTVAVLPEAEEVDIEIKPEELKIETMRAGGAGGQHVNTTDSAVRIT 249
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKL---YE-MERSRIHLSRSKLRSEQIGSGDR 364
HIPTGM ++ QDERSQ NK KA+++L A+L YE +E+ +I +K R EQ+G+G+R
Sbjct: 250 HIPTGMVVTCQDERSQLQNKMKAMQILRARLKDYYERLEKEKI----AKERKEQVGTGER 305
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SE+IRTYNFPQ RVTDHRV T + I+D+M+G +LD ID L+ ++ + +A+
Sbjct: 306 SEKIRTYNFPQNRVTDHRVNYTSYRINDIMDG-DLDEIIDVLIAKENEEKLANL 358
>gi|194290876|ref|YP_002006783.1| peptide chain release factor 1 [Cupriavidus taiwanensis LMG 19424]
gi|238692779|sp|B3R722.1|RF1_CUPTR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|193224711|emb|CAQ70722.1| peptide chain release factor RF-1 [Cupriavidus taiwanensis LMG
19424]
Length = 360
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/329 (47%), Positives = 227/329 (68%), Gaps = 6/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L S+ R Q ++ ++L+ +D +M D A +E+ A D
Sbjct: 34 QYRKLSREHAELSPVAEQYSQYRQAQDDLATAQALL----DDPEMKDFAADEIAAARDRL 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ LQ+ L + LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ EV+
Sbjct: 90 EALQASLQRLLLPKDPNDDRNLLLEIRAGTGGEESALFAADLLRMYTRYAERQRWQVEVM 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ESDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 150 SESESDLGGYKEVIIRIAGDAAFSRLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEA 209
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DEV +V + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH NK K
Sbjct: 210 DEVGEVEINPADLRIDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKDK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+KVL A++ +M+ + R IGSGDRS+RIRTYNFPQGRVTDHR+ +T + I
Sbjct: 270 AMKVLAARIKDMQTRAAQAREASTRRNLIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKI 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+M+G ++D + AL + + D +A+ G
Sbjct: 330 DMIMDG-DMDELLSALSAEHQADQLAALG 357
>gi|39933683|ref|NP_945959.1| peptide chain release factor 1 [Rhodopseudomonas palustris CGA009]
gi|192289040|ref|YP_001989645.1| peptide chain release factor 1 [Rhodopseudomonas palustris TIE-1]
gi|61214634|sp|Q6NC66.1|RF1_RHOPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229470355|sp|B3QCF6.1|RF1_RHOPT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|39647529|emb|CAE26050.1| peptide chain release factor 1 [Rhodopseudomonas palustris CGA009]
gi|192282789|gb|ACE99169.1| peptide chain release factor 1 [Rhodopseudomonas palustris TIE-1]
Length = 361
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/330 (45%), Positives = 227/330 (68%), Gaps = 2/330 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELCLAIDE 150
+Y + +EL +L + + R + E+ + L+ + + + +M MA E L
Sbjct: 31 DYVRITRELSELNPLVEAVKSYRQVRDELGEIDELLEDPATEPEMRAMAEAERDALDAHR 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
++ +Q + + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +GW EV
Sbjct: 91 DELIQQIRI-ALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQGWSVEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 ISASEGTVGGYKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
++VDV ++ +DLRI+T R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH N+A
Sbjct: 210 VEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQHKNRAS 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ +L +++Y+ E+ R+ +RS R ++GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 270 AMNILRSRIYDAEQQRLDAARSAERKAKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKL 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFGS 420
++ GE L IDAL + + +A G+
Sbjct: 330 PQVIAGEALGELIDALTTEHQAAQLAEQGN 359
>gi|261363763|ref|ZP_05976646.1| peptide chain release factor 1 [Neisseria mucosa ATCC 25996]
gi|288568341|gb|EFC89901.1| peptide chain release factor 1 [Neisseria mucosa ATCC 25996]
Length = 358
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 230/342 (67%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
ATEE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FATEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|220905560|ref|YP_002480872.1| peptide chain release factor 1 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254790877|sp|B8J4R4.1|RF1_DESDA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219869859|gb|ACL50194.1| peptide chain release factor 1 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 356
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/358 (46%), Positives = 233/358 (65%), Gaps = 5/358 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E++ LE + QP+ +Y K K L D + L R +E+
Sbjct: 1 MFAKLEGLEKKYLELEEALAQPDVFNDQDQYRKLTKAHADLSDVVELFRRHRAVSEELAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+++ ED ++ MA EE+ E L+ L LLP D DE++ ILE+RAGTG
Sbjct: 61 NRLLLHD--EDPEIRAMAQEEVHRGEAELPNLEHELKVMLLPSDPLDEKNTILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY++ K WK E++ + S+ GYKE I+G VY LKFE+G
Sbjct: 119 GEEAALFAADLFRMYTRYAELKNWKVEIMSESPSENGGYKEIICLIAGDRVYSHLKFEAG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VA++P+A+EVDV +R EDLRID YR+ G+GGQH N T
Sbjct: 179 THRVQRVPATEAQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTE 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PT ++ QDERSQH NKA+A+KVL +++ ER R S R Q+GSG
Sbjct: 239 SAVRITHLPTNTVVTCQDERSQHKNKARAMKVLASRILAAERERQSSELSADRKAQVGSG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
DRSERIRTYNFPQGR TDHR+ +T +++ +MEGE L+ ++AL + +A+ + S
Sbjct: 299 DRSERIRTYNFPQGRCTDHRINLTLYSLDRIMEGE-LESLVEALGTAAQAEALKAQAS 355
>gi|449127508|ref|ZP_21763781.1| peptide chain release factor 1 [Treponema denticola SP33]
gi|448944241|gb|EMB25122.1| peptide chain release factor 1 [Treponema denticola SP33]
Length = 361
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 164/346 (47%), Positives = 237/346 (68%), Gaps = 4/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRNRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+E++ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEILSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ + QDE+SQ NKAKA++VL ++LY++E S+ R++ R Q+GSG
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
DRSERIRTYNFPQ RVTDHR+ +T + + +M+G LD IDAL +
Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDAVMQG-ALDELIDALCI 344
>gi|260576769|ref|ZP_05844754.1| peptide chain release factor 1 [Rhodobacter sp. SW2]
gi|259021021|gb|EEW24332.1| peptide chain release factor 1 [Rhodobacter sp. SW2]
Length = 351
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 229/331 (69%), Gaps = 6/331 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A AE + ++E L+ + IS R ++ ++L+ D +M +A EEL
Sbjct: 25 AGHAEIASLSREYTDLKPVVAEISAYRRALDDLAQAEALL----ADPEMRPLAEEELPSL 80
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
L+ L +LLPKD AD R ILE+R GTGG+EA+LFA D+ +MY+RY++ +GW+
Sbjct: 81 KARIPELEQALRLALLPKDAADARPAILEIRPGTGGDEAALFAADLLRMYQRYAESQGWR 140
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
FE++ +SDL G ++ + + G GV+ KLK+ESG+HRVQRVP TE GRVHTSA +VA+
Sbjct: 141 FEIIDQQDSDLGGIRDVTVHVQGAGVFAKLKYESGVHRVQRVPETESQGRVHTSAATVAV 200
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+A+EVD+ + D+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+ ++ ++SQH N
Sbjct: 201 LPEAEEVDLDIPASDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGIIVT-SAQKSQHRN 259
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
+ A++VL A+LY++ER+R+ +R+ R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T
Sbjct: 260 RDLAMQVLRARLYDLERARVDGARAADRKAQVGSGDRSERIRTYNFPQGRLTDHRINLTL 319
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+A+ +M G +L IDAL+ Q + D +A
Sbjct: 320 YALPQIMAG-DLGGVIDALVAQDQADKLAEM 349
>gi|167041273|gb|ABZ06029.1| putative peptidyl-tRNA hydrolase domain protein [uncultured marine
microorganism HF4000_005D21]
gi|167045778|gb|ABZ10424.1| putative peptidyl-tRNA hydrolase domain protein [uncultured marine
bacterium HF4000_APKG3108]
Length = 358
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 153/302 (50%), Positives = 214/302 (70%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+KE L+ +I + DKDM+++A EL +++ + +L LLP D+AD ++ ILE
Sbjct: 55 EKEKVELEKIIEDKKSDKDMIELAKNELIQLSKKKEENEKILKVYLLPNDEADSKNAILE 114
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LF D++KMYER K W FE++ +++S+ G+KE I G +Y
Sbjct: 115 IRAGTGGLEATLFVADLYKMYERVCLNKKWSFEIINLSKSEAGGFKEVILLIKGTNIYSF 174
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GRVHTSA +VA+LP+A+EVDV++ +DLRID +RS G GGQ
Sbjct: 175 LKFESGVHRVQRVPETETQGRVHTSAATVAVLPEAEEVDVKINEKDLRIDVFRSSGPGGQ 234
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
NTT+SAVR+TH+PTG+ +S QDE+SQH N+AKA+K+L +++Y+ ER + RSK R
Sbjct: 235 SVNTTDSAVRITHLPTGIAVSQQDEKSQHKNRAKAMKILRSRVYDAEREKKDKKRSKDRK 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
QIGSGDRSERIRTYNFPQ RVTDHR+ +T H + + + G+ + F L +Q + +A
Sbjct: 295 NQIGSGDRSERIRTYNFPQSRVTDHRINLTIHKLQEFLNGDAFEEFGQNLRIQDQEIKLA 354
Query: 417 SF 418
+
Sbjct: 355 NL 356
>gi|269102026|ref|ZP_06154723.1| peptide chain release factor 1 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161924|gb|EEZ40420.1| peptide chain release factor 1 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 362
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 235/351 (66%), Gaps = 6/351 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R +++L+ P + ++ +KE +L + + Q ++ + + E
Sbjct: 12 LEERYEEVQHLLGDPSVISDQDKFRSLSKEYSQLEEVTKCFQAYKQAQDDLAAAEEMANE 71
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+D +M +MA EE+ A E +RL+ L L+PKD DER+C LE+RAG GG+EA +F
Sbjct: 72 --DDAEMREMAQEEIKEAKAEIERLEDELQVLLIPKDPNDERNCFLEIRAGAGGDEAGIF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY++++GW+ EV+ +++ GYKE A ++G G YG LKFESG HRVQRV
Sbjct: 130 AGDLFRMYSRYAERRGWRIEVMSANDAEHGGYKEMIAKVTGDGAYGVLKFESGGHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GRVHTSA +VA+LP+ E ++ + DL+IDTYRS G+GGQH NTT+SA+R+T
Sbjct: 190 PATESQGRVHTSACTVAVLPEIPEAEIPEINPSDLKIDTYRSSGAGGQHVNTTDSAIRIT 249
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PTG+ + QDERSQH NKAKA+ VL A++ + E + H + R +GSGDRS+RI
Sbjct: 250 HLPTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRHAEEASTRRNLLGSGDRSDRI 309
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RTYN+PQGRV+DHR+ +T + ++++MEG ++D I +L++ + D +A+
Sbjct: 310 RTYNYPQGRVSDHRITLTIYRLNEVMEG-DVDCLIQPVLVEYQADQLAAMA 359
>gi|297183483|gb|ADI19614.1| protein chain release factor a [uncultured SAR11 cluster bacterium
HF0770_37D02]
Length = 358
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/279 (53%), Positives = 202/279 (72%)
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
KE L+ +I E DK+M+ +A EL ++ + L LLPKD+AD ++ ILE+
Sbjct: 56 KEKKELEKIIDEKDGDKEMIKLAENELIQLSKKKSEYEQKLKIYLLPKDEADAKNAILEI 115
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG EA+LF D++KMYE+ KK W E++ +++S+ G+KE I G +Y L
Sbjct: 116 RAGTGGLEATLFVADLYKMYEKVCLKKKWLLEIINISKSEAGGFKEVILLIKGNNIYSFL 175
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTSA +VA+LP+A+EVD+++ +DLRID +RS G GGQ
Sbjct: 176 KFESGVHRVQRVPKTETQGRVHTSAATVAVLPEAEEVDIKINEKDLRIDVFRSSGPGGQS 235
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVR+TH+P+G+ +S QDE+SQH N+AKA+K+L +++YE ER + RS+ R
Sbjct: 236 VNTTDSAVRITHLPSGVVVSQQDEKSQHKNRAKAMKILRSRVYENEREKKDKERSRDRKN 295
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEG 396
QIGSGDRSERIRTYNFPQGRVTDHR+ +T H + + + G
Sbjct: 296 QIGSGDRSERIRTYNFPQGRVTDHRINLTLHKLEEFLNG 334
>gi|110598269|ref|ZP_01386544.1| peptide chain release factor 1 [Chlorobium ferrooxidans DSM 13031]
gi|110340077|gb|EAT58577.1| peptide chain release factor 1 [Chlorobium ferrooxidans DSM 13031]
Length = 357
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/345 (47%), Positives = 232/345 (67%), Gaps = 5/345 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +I+ + LE L+ P A+ A + K NKE LR+ + + E+D
Sbjct: 1 MLDKLQSIKEKHLDLEQLLADPNAATDQARFRKLNKEYSDLREIVQAYDAYGQAKTELDQ 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ + D +M ++ E+ + L+ L LLPKD+AD R+ I+E+RAGTG
Sbjct: 61 SKKLL-DSESDPEMRELVQAEISELQKKLPELEQHLKVLLLPKDEADSRNVIVEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFES 241
GEEA+LFA D+ +MY+RY++K+GWK EV+ ES + G ++E + +SG VYG +K+ES
Sbjct: 120 GEEAALFAADILRMYQRYAEKQGWKCEVLHYNESSMPGGFREITLEVSGHDVYGTMKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSAVSVA+LP+A+EVDV +R EDLR DTYRSGG GGQ+ N
Sbjct: 180 GVHRVQRVPDTETQGRIHTSAVSVAVLPEAEEVDVEIRREDLRFDTYRSGGKGGQNVNKV 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+AVR+TH+PTG+ + Q+ERSQ NK +A+K+L KLY++ + R+ LR + +
Sbjct: 240 ETAVRITHMPTGIVSACQEERSQLQNKERAMKMLRTKLYDILLAEQVQQRADLRRSMVTT 299
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
GDRS +IRTYN+PQ RVTDHR+G T HA+ +++GE DI IDAL
Sbjct: 300 GDRSAKIRTYNYPQSRVTDHRIGFTSHALPQILQGEIQDI-IDAL 343
>gi|99080782|ref|YP_612936.1| peptide chain release factor 1 [Ruegeria sp. TM1040]
gi|119361610|sp|Q1GI42.1|RF1_SILST RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|99037062|gb|ABF63674.1| bacterial peptide chain release factor 1 (bRF-1) [Ruegeria sp.
TM1040]
Length = 350
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 154/315 (48%), Positives = 223/315 (70%), Gaps = 8/315 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+LR ++I + L+ + +E D DM +A EE+ + + L +LLP
Sbjct: 37 SDLRPVVEQISAYQQLLSDLAEAEEMLADPDMKALAEEEIPTLKAALPQAEHALQLALLP 96
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
KD+AD R ILE+R GTGG+EA+LFA D+++MY RY++ +GWK +V+ S+L G KE
Sbjct: 97 KDEADSRAAILEIRPGTGGDEAALFAADLYRMYSRYAETQGWKVDVIEEQASELGGLKEL 156
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A I+G GV+ +LK+ESG+HRVQRVP+TE GR+HTSA +VA+LP+A++VD+++ DLR
Sbjct: 157 VARINGDGVFARLKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDIKIDANDLR 216
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
IDT R+ G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL +LY++ER
Sbjct: 217 IDTMRASGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQHRNREIAMQVLKTRLYDLER 275
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
RI RS R+ Q+GSGDRSERIRTYNFPQGR++DHR+ +T + + +M G +LD ID
Sbjct: 276 QRIDTERSADRASQVGSGDRSERIRTYNFPQGRMSDHRINLTLYKLDQIM-GGDLDEIID 334
Query: 405 ALLLQQEMDAIASFG 419
AL+ + + +A G
Sbjct: 335 ALISEHQAKLLAEMG 349
>gi|217969845|ref|YP_002355079.1| peptide chain release factor 1 [Thauera sp. MZ1T]
gi|217507172|gb|ACK54183.1| peptide chain release factor 1 [Thauera sp. MZ1T]
Length = 360
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 165/327 (50%), Positives = 228/327 (69%), Gaps = 15/327 (4%)
Query: 107 MHLISELRTKQKEIDGLKSLIYE-------CSEDKDML-DMATEELC-LAIDE-EKRLQS 156
M+ EL ++ EI+ + +L E C+ +++L D EL L + E E R+++
Sbjct: 32 MNAFRELSRERAEIEPVVALYREHRLAEADCATARELLADPEMRELGELELAEGEARIEA 91
Query: 157 L---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L L ++LLP+D D R+ LE+RAGTGG+EA+LFA D+ +MY RY++++ WK E+V
Sbjct: 92 LEAELQRALLPRDPNDARNLFLEIRAGTGGDEAALFAGDLLRMYTRYAERQRWKVEIVSA 151
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+ESDL GYKE A + G G Y KLKFESG HRVQRVP+TE GR+HTSA +VA+LP+ADE
Sbjct: 152 SESDLGGYKEVIARVVGNGAYSKLKFESGGHRVQRVPVTETQGRIHTSACTVAVLPEADE 211
Query: 274 VD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
V+ V + DLRIDT+R+ G+GGQH N T+SAVR+THIPTG+ + QD+RSQH NKA+A+
Sbjct: 212 VEAVDINPADLRIDTFRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHRNKAQAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
VL A+LY+ + + R +GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 272 AVLAARLYDARVRAQQSAEAAQRKSLVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDA 331
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
+M+GE LD +DAL L+ + D +A+ G
Sbjct: 332 VMQGE-LDEIVDALTLEHQADLLAALG 357
>gi|118602715|ref|YP_903930.1| peptide chain release factor 1 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|166223599|sp|A1AX02.1|RF1_RUTMC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|118567654|gb|ABL02459.1| bacterial peptide chain release factor 1 (bRF-1) [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 363
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 151/284 (53%), Positives = 211/284 (74%), Gaps = 8/284 (2%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLL---KSLLPKDDADERDCILEVRAGTGGEEASL 188
+D D+ MA EE+ +D +K+L L L KSLLPKD D R+ I+E+RAGTGG EAS+
Sbjct: 72 DDMDIKAMAKEEM---LDVKKKLDHLYLELKKSLLPKDPNDSRNIIIEIRAGTGGNEASI 128
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F+ ++FKMY RY++KK W+ EV+ + + G+KE A ISGVGVY KLKFESG HRVQR
Sbjct: 129 FSSNLFKMYSRYTEKKKWQIEVISSSLGEHGGFKEIIARISGVGVYSKLKFESGAHRVQR 188
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GRVHTSA ++AI+P+ + + +V + D+R+DT+R+ G+GGQH N TNSAVR+
Sbjct: 189 VPETESQGRVHTSACTIAIMPEVENIEEVNINMSDVRVDTFRASGAGGQHVNKTNSAVRI 248
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG QD RSQH NKA+AL VL ++++++++ H ++ R E IGSGDRS+R
Sbjct: 249 THIPTGTVAECQDGRSQHKNKAQALLVLASRIFDLQQQEQHKEQASTRKELIGSGDRSQR 308
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
IRTYN+PQGR+TDHR+ +T + +S++MEG NL+ I+ L+++Q+
Sbjct: 309 IRTYNYPQGRITDHRINLTLYKLSEIMEG-NLNAIIEPLIVEQQ 351
>gi|417644436|ref|ZP_12294426.1| peptide chain release factor 1 [Staphylococcus warneri VCU121]
gi|330684805|gb|EGG96498.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU121]
Length = 358
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 162/354 (45%), Positives = 237/354 (66%), Gaps = 11/354 (3%)
Query: 72 IERRSACLENLVNQPEASPA-----EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E R L +++ P+ +YSK EL+K D + ++K++E+ ++ +
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQAELQKTVD---VYRSYKSKKEELADIEEM 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E S DK+ ++M EE +E ++ L L+PKD DE+D I+E+RA GG+EA
Sbjct: 65 LNETS-DKEEIEMLKEESSSLKNELPEMEEQLKLLLIPKDPNDEKDVIVEIRAAAGGDEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+ +MY +Y++ +K E+V V+ESD GYKE S ++SG G Y KLKFE+G HRV
Sbjct: 124 AIFAGDLMRMYSKYAEAHHFKTEIVEVSESDHGGYKEISFSVSGNGAYSKLKFENGAHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR
Sbjct: 184 QRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVR 243
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSE
Sbjct: 244 ITHLPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSE 302
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
RIRTYN+PQ RVTDHR+G+T +S +MEG NLD IDAL L ++ D + +
Sbjct: 303 RIRTYNYPQSRVTDHRIGLTLQKLSQIMEG-NLDEIIDALTLSEQTDKLKELNN 355
>gi|218783033|ref|YP_002434351.1| peptide chain release factor 1 [Desulfatibacillum alkenivorans
AK-01]
gi|226739100|sp|B8FEA2.1|RF1_DESAA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|218764417|gb|ACL06883.1| peptide chain release factor 1 [Desulfatibacillum alkenivorans
AK-01]
Length = 355
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/358 (46%), Positives = 241/358 (67%), Gaps = 7/358 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL- 123
M R+ +E+R +E+L++ P+ + K +R+ D ++ R ++ ++GL
Sbjct: 1 MLDRLEGVEQRFLEVESLLSDPKIV-GDQKVYQKYVREHADLSKVVEAYREYKQVLEGLE 59
Query: 124 --KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K L+ + D D+ D+A EE+ E+ RL+ L LLPKD D+++ ILE+RAGT
Sbjct: 60 ESKELLKDP--DPDIKDLAKEEIDRLDKEQVRLEDELKILLLPKDPNDDKNVILEIRAGT 117
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA LFA D+F+MY RY++ +GWK E + + + G KE +A I+G GVY KFES
Sbjct: 118 GGDEAGLFAADLFRMYSRYAETRGWKVETLSEHLTGVGGIKEIAAMITGQGVYSAFKFES 177
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G HRVQRVP+TE GR+HTSA +VA+LP+A+EVD+++ ++R+D YRS G+GGQH NTT
Sbjct: 178 GTHRVQRVPVTEAQGRIHTSACTVAVLPEAEEVDIQIDPSEIRVDVYRSQGAGGQHVNTT 237
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+TH+PTG+ ++ QDE+SQH NKAKA+KVL A+L + + S S R Q+GS
Sbjct: 238 DSAVRLTHLPTGVVVTCQDEKSQHKNKAKAMKVLRARLLDHAVQEQNASISAERKSQVGS 297
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GDRSERIRTYN+PQGRVTDHR+G+T + + +M G+ +I +DAL +A+ G
Sbjct: 298 GDRSERIRTYNYPQGRVTDHRIGLTLYKLESIMAGQISEI-VDALTTHYNAEALQEGG 354
>gi|206890162|ref|YP_002248216.1| peptide chain release factor 1 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|238054474|sp|B5YIQ7.1|RF1_THEYD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|206742100|gb|ACI21157.1| peptide chain release factor 1 [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 353
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 159/345 (46%), Positives = 236/345 (68%), Gaps = 5/345 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++++ +E + + ++ P+ ++ EY K ++E +L + E + K+I+
Sbjct: 1 MLEKLMEVENKYEKITQTLSDPKVFSNKDEYMKYSREQAELEPIVTKFREYKRILKQIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ +I S D D+ ++A EEL + +++ L LLPKD DE++ ILE+RAGTG
Sbjct: 61 AEEMIK--SGDPDLKELAEEELQQLKKIKPQIEQELKVLLLPKDPRDEKNVILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA ++F+MY +Y++ KGWK E++ + L G+KE A ISG G + KLK+ESG
Sbjct: 119 GEEAALFAANLFRMYAKYAESKGWKVEIIDSHPTGLGGFKEIIATISGKGAFSKLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P+TE SGR+HTS +VA+LP+A+EVD+++ +DLRIDT+ S G GGQ NT
Sbjct: 179 VHRVQRIPVTEASGRIHTSTATVAVLPEAEEVDIKIDEKDLRIDTFCSSGPGGQSVNTAY 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+ HIPTG+ + QDERSQ N+ KA+KVL A+L E+ER + R+ R Q+G+G
Sbjct: 239 SAVRIVHIPTGIIVQCQDERSQIKNREKAMKVLRARLLEIERQKKEAERAAERKGQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+RSERIRTYNFPQ RVTDHR+G+T + + ++ G N+D IDAL+
Sbjct: 299 ERSERIRTYNFPQNRVTDHRIGLTLYKLEQVLNG-NIDEIIDALI 342
>gi|302339534|ref|YP_003804740.1| peptide chain release factor 1 [Spirochaeta smaragdinae DSM 11293]
gi|301636719|gb|ADK82146.1| peptide chain release factor 1 [Spirochaeta smaragdinae DSM 11293]
Length = 355
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 163/320 (50%), Positives = 225/320 (70%), Gaps = 10/320 (3%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-- 150
Y + ++E L+D++ + I+ K L+ E D +M +MA EL D
Sbjct: 31 YKELSQEHAALKDTVEEFGHYKELLSGIEETKQLL-ESESDHEMREMAEVELEELKDHLE 89
Query: 151 --EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
EKRL++LL+ PKD D ++ I+E+RAGTGG+EASLFA D+++MY R+S++KGWK
Sbjct: 90 KSEKRLKTLLV----PKDPLDGKNTIIEIRAGTGGDEASLFAADLYRMYSRFSEQKGWKL 145
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
E++ +++++ G+KE +ISG VYG L++ESG+HRVQRVP TE GR+HTSAV+VA+L
Sbjct: 146 EMMESSDTEVGGFKEVIFSISGKEVYGNLRYESGVHRVQRVPSTESQGRIHTSAVTVAVL 205
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
P+A++ D+ + EDL+ID +RS G GGQ NTT+SAVRVTHIPTG+ ++ QDE+SQ NK
Sbjct: 206 PEAEKTDIDISPEDLKIDVFRSSGPGGQSVNTTDSAVRVTHIPTGVVVTCQDEKSQLKNK 265
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
AKAL+VL A+LYE E + R + R QIGSGDRSERIRTYNFPQ RVTDHR+ +T +
Sbjct: 266 AKALRVLRARLYEAEEMKQRKERDQARKSQIGSGDRSERIRTYNFPQNRVTDHRINLTLY 325
Query: 389 AISDMMEGENLDIFIDALLL 408
+ +MEG L+ IDAL L
Sbjct: 326 KLDQVMEG-ALNELIDALKL 344
>gi|114777343|ref|ZP_01452340.1| peptide chain release factor 1 [Mariprofundus ferrooxydans PV-1]
gi|114552125|gb|EAU54627.1| peptide chain release factor 1 [Mariprofundus ferrooxydans PV-1]
Length = 357
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 151/290 (52%), Positives = 212/290 (73%), Gaps = 5/290 (1%)
Query: 129 EC-SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+C +E K+M + E+ AI S+LL LPKD D RD ILE+RAGTGG+EA+
Sbjct: 69 DCDAELKEMAEAEAREIKQAISASDAALSMLL---LPKDPNDNRDVILEIRAGTGGDEAA 125
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA D+F+MY RY++ +G+K E++ +++ + GYKE A ISG GV+ + KFESG HRVQ
Sbjct: 126 LFAADLFRMYSRYAETQGYKVEILSASDTGIGGYKEIIAQISGNGVFSRFKFESGAHRVQ 185
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTSA +VAILP A+EVD+ +R EDLRID YR+ G+GGQH N T SAVR+
Sbjct: 186 RVPETESGGRIHTSACTVAILPVAEEVDINIRPEDLRIDVYRASGAGGQHVNKTESAVRI 245
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIP+G+ ++ QD+ SQH NKA+A+KVL A+L++ E+S + RS+ R +GSGDRSER
Sbjct: 246 THIPSGLVVTCQDQASQHKNKAQAMKVLQARLFDKEQSELDAERSQARKGMVGSGDRSER 305
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
IRTYN+PQGR+TDHR+G+T + + ++ G ++ +DAL+ + + +A+
Sbjct: 306 IRTYNYPQGRITDHRIGLTLYKLEQIL-GGDMGELLDALITYHQAELLAA 354
>gi|46581318|ref|YP_012126.1| peptide chain release factor 1 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601501|ref|YP_965901.1| peptide chain release factor 1 [Desulfovibrio vulgaris DP4]
gi|387154537|ref|YP_005703473.1| peptide chain release factor 1 [Desulfovibrio vulgaris RCH1]
gi|61214640|sp|Q727E1.1|RF1_DESVH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223554|sp|A1VAK8.1|RF1_DESVV RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|46450740|gb|AAS97386.1| peptide chain release factor 1 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561730|gb|ABM27474.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfovibrio
vulgaris DP4]
gi|311234981|gb|ADP87835.1| peptide chain release factor 1 [Desulfovibrio vulgaris RCH1]
Length = 357
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 161/326 (49%), Positives = 229/326 (70%), Gaps = 14/326 (4%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL----CLAID 149
+KA+ +L+++ D+ E+ KQ D K L+ + D ++ MA EE+ D
Sbjct: 35 TKAHADLKQVVDAFRRYKEM--KQNLADN-KELLGDS--DHEIRAMAHEEIKAIEAALPD 89
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E+ L+ LLL P+D D+++ +LE+RAGTGGEEASLFA D+F+MY RY++ GWK E
Sbjct: 90 IEQELKILLL----PRDPMDDKNILLEIRAGTGGEEASLFAADLFRMYTRYAEIMGWKVE 145
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ ++SD GYKE A I+G VY +LK+ESG HRVQRVP TE GR+HTSA +VA++P
Sbjct: 146 VLSASDSDTGGYKEIIALIAGDKVYSRLKYESGTHRVQRVPATEAQGRIHTSAATVAVMP 205
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
+A+EVDV +R +DLRID YR+ G+GGQH N T SAVR+TH+PTG+ ++ QDE+SQH NKA
Sbjct: 206 EAEEVDVDIRPDDLRIDVYRASGAGGQHVNKTESAVRITHLPTGIVVACQDEKSQHKNKA 265
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
KA+KVL +++ + E+ R H + R +GSGDRSERIRTYN+PQ R+TDHR+ +T ++
Sbjct: 266 KAMKVLISRVLQAEQERAHSVIADARRALVGSGDRSERIRTYNYPQSRITDHRINLTLYS 325
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAI 415
+ +MEGE L +DAL+ + +A+
Sbjct: 326 LDKVMEGE-LAPLVDALVTHAQTEAL 350
>gi|332800047|ref|YP_004461546.1| peptide chain release factor 1 [Tepidanaerobacter acetatoxydans
Re1]
gi|438003343|ref|YP_007273086.1| Peptide chain release factor 1 [Tepidanaerobacter acetatoxydans
Re1]
gi|332697782|gb|AEE92239.1| Peptide chain release factor 1 [Tepidanaerobacter acetatoxydans
Re1]
gi|432180137|emb|CCP27110.1| Peptide chain release factor 1 [Tepidanaerobacter acetatoxydans
Re1]
Length = 356
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 162/354 (45%), Positives = 237/354 (66%), Gaps = 3/354 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE++ L + PE A E+ KE L + + E + K+++
Sbjct: 1 MIEKLEIIEKKYDELTKKIADPEIIARQEEWIGLTKEHASLEEIVTNFREYKEVLKQLEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
L+ + + D +M + EL +++ +LQ L LLP+D D+R+ I+E+RAGTG
Sbjct: 61 NSELLEDAAGDIEMEQLIKSELEALEEKKSKLQEQLRILLLPQDPNDDRNVIMEIRAGTG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY RY++K+GWK E++ ++L G+KE I+G G Y +LK+ESG
Sbjct: 121 GDEAALFAGDLFRMYSRYAEKQGWKVEIIDSNPTELGGFKEVIFEINGKGAYSRLKYESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSA +VA+LP+A EVD+ + +DLRID YR+ G GGQ NTT+
Sbjct: 181 VHRVQRVPSTEAGGRIHTSAATVAVLPEAHEVDIEINPDDLRIDIYRASGHGGQGVNTTD 240
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ ++ QDERSQ NK KA+KVL A+L E + ++ R Q+GSG
Sbjct: 241 SAVRITHIPTGLVVTCQDERSQLKNKDKAMKVLRARLLEKVQEEQEREIAQNRRSQVGSG 300
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
DRSERIRTYNFPQGR+TDHR+ +T H ++++++GE LD IDAL+ + + +A
Sbjct: 301 DRSERIRTYNFPQGRITDHRINLTTHQLTNVLQGE-LDELIDALVAEDQAKKLA 353
>gi|418326961|ref|ZP_12938136.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU071]
gi|418413304|ref|ZP_12986546.1| peptide chain release factor 1 [Staphylococcus epidermidis
BVS058A4]
gi|420164484|ref|ZP_14671213.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM095]
gi|420169228|ref|ZP_14675831.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM087]
gi|420186327|ref|ZP_14692398.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM040]
gi|365224067|gb|EHM65337.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU071]
gi|394231589|gb|EJD77215.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM095]
gi|394231691|gb|EJD77315.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM087]
gi|394252544|gb|EJD97576.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM040]
gi|410879191|gb|EKS27042.1| peptide chain release factor 1 [Staphylococcus epidermidis
BVS058A4]
Length = 358
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 237/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPEMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T ++ +MEG NLD ++AL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLNQIMEG-NLDEIVEALTLSEQTEKLKELNN 355
>gi|160935042|ref|ZP_02082428.1| hypothetical protein CLOLEP_03918 [Clostridium leptum DSM 753]
gi|156866495|gb|EDO59867.1| peptide chain release factor 1 [Clostridium leptum DSM 753]
Length = 358
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 226/326 (69%), Gaps = 5/326 (1%)
Query: 82 LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141
+V+ PEA Y+ KE++ L + E + ++ + K L+ E +KD +M
Sbjct: 24 VVSDPEA----YAALMKEVKGLEPVVEKYKEYKKQKNNEEEAKQLLAEGGLEKDFREMVE 79
Query: 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYS 201
EL A + +++ L LLPKD D+R+ I+E+R G GGEEA+LF+ +F+MY Y+
Sbjct: 80 LELEEARESLEKISEELKILLLPKDPNDDRNVIVEIRGGAGGEEAALFSASLFRMYSMYA 139
Query: 202 QKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTS 261
+ K WK E++ E++L GYKE S I+G G Y ++K+ESG+HRVQRVP TE GR+HTS
Sbjct: 140 ETKRWKTEILNANETELGGYKEISFMITGEGAYSRMKYESGVHRVQRVPETETQGRIHTS 199
Query: 262 AVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDE 321
V+VA+LP+A++V+V + DL+IDT+RSGG+GGQH N T+SA+R+TH+PTG+ + QDE
Sbjct: 200 TVTVAVLPEAEDVEVEINPSDLKIDTFRSGGAGGQHINKTDSAIRITHLPTGLVVECQDE 259
Query: 322 RSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDH 381
RSQ+ NK KA+KVL ++L E ER + ++ R Q+G+GDRSERIRTYNFPQGR+TDH
Sbjct: 260 RSQYKNKDKAMKVLKSRLLEAEREKQQNEVAQERKSQVGTGDRSERIRTYNFPQGRLTDH 319
Query: 382 RVGITHHAISDMMEGENLDIFIDALL 407
R+G+T + + D+M G NLD IDAL+
Sbjct: 320 RIGLTLYRLEDVMNG-NLDEVIDALI 344
>gi|117926919|ref|YP_867536.1| peptide chain release factor 1 [Magnetococcus marinus MC-1]
gi|226739111|sp|A0LDT7.1|RF1_MAGSM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|117610675|gb|ABK46130.1| bacterial peptide chain release factor 1 (bRF-1) [Magnetococcus
marinus MC-1]
Length = 361
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/294 (51%), Positives = 210/294 (71%), Gaps = 1/294 (0%)
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D +M MA EE ++ ++ Q L LLPKD D+++ ILE+RAGTGGEE
Sbjct: 66 MLAEAGDDAEMRQMAREERETLKNKLEQSQKHLHLMLLPKDPNDDKNVILEIRAGTGGEE 125
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LF D+F+MY R+++ KGW+ E++ + +DL GYKE A + G G Y LK+ESG+HR
Sbjct: 126 AALFVSDLFRMYGRFAEIKGWRIEMLSSSATDLGGYKELIAMVQGKGAYMGLKYESGVHR 185
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P+TE GR+HTSAV+VAILP+ADEV++ + ++DLRID YRS G GGQ NTT+SAV
Sbjct: 186 VQRIPVTETGGRIHTSAVTVAILPEADEVELHIEDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ + QDE+SQH NKAKA+KVL A+L + ++ R++ R Q+GSGDRS
Sbjct: 246 RITHLPTGLVVICQDEKSQHKNKAKAMKVLQARLLDAQQQAADSQRAEARKGQVGSGDRS 305
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
ERIRTYNFPQ RVTDHR+ +T H + +++G L +DAL + +A G
Sbjct: 306 ERIRTYNFPQSRVTDHRINLTLHKLDQVLQG-GLAEVVDALTAHDQASKLAHLG 358
>gi|350571878|ref|ZP_08940194.1| peptide chain release factor RF1 [Neisseria wadsworthii 9715]
gi|349791063|gb|EGZ44956.1| peptide chain release factor RF1 [Neisseria wadsworthii 9715]
Length = 358
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 229/341 (67%), Gaps = 8/341 (2%)
Query: 82 LVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PE++ Y K NKE +L + + + R Q ++ + ++ D DM D
Sbjct: 22 LLGAPESTADMDNYRKLNKEHAELTPIVEVFRQYRQAQNDLADAEEML----SDPDMKDF 77
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ A + + L L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY R
Sbjct: 78 AAEEIEAAKTKIETLDLALQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYTR 137
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+++ W+ E+V ESDL GYKE A I G+G Y KLKFESG HRVQRVP TE GR+H
Sbjct: 138 YAERNNWQVEIVSANESDLGGYKEVIARIIGLGAYSKLKFESGGHRVQRVPATESQGRIH 197
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ ++ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 198 TSACTVAVMPEADELEEIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVEC 257
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QD RSQH NKA+A+KVL A+L +M++ + R IGSGDRSERIRTYN+PQGRV
Sbjct: 258 QDGRSQHANKAQAMKVLAARLNDMQKREAQAKEAAERKTLIGSGDRSERIRTYNYPQGRV 317
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+DHR+ +T H + +M+G +LD AL+ + + + +AS G
Sbjct: 318 SDHRINLTLHKLDFIMDG-DLDELTGALIAEHQAELLASMG 357
>gi|390568973|ref|ZP_10249262.1| peptide chain release factor 1 [Burkholderia terrae BS001]
gi|389939099|gb|EIN00939.1| peptide chain release factor 1 [Burkholderia terrae BS001]
Length = 360
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 209/294 (71%), Gaps = 2/294 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ A D+ ++L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 ELLSDASMKDFAEEEIRAARDQMEKLEGELQKMLLPKDPNDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGDAAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 247 THLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
IRTYNFPQGR+TDHR+ +T + + +MEG +LD I AL+ + + + +AS G T
Sbjct: 307 IRTYNFPQGRLTDHRINLTLYRLEALMEG-DLDELIAALVSEHQAELLASLGDT 359
>gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040551|gb|ACT57347.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 357
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 163/303 (53%), Positives = 224/303 (73%), Gaps = 5/303 (1%)
Query: 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR-LQSLLLKSLLPKDDADERDCI 174
KQ+E D L ++I + + D ++ D+A E+ LAI++E R L++ + LLPKD D++ CI
Sbjct: 56 KQEEQD-LHTVIGDHNSDSEIRDLAQIEV-LAIEKEIRELENEINYLLLPKDTDDDKSCI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LF D+F+MYERY+ + WK EV+ +++D GYKE A ISG GV+
Sbjct: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
++KFESG+HRVQRVP TE SGRVHTSA +VA+LP+A E+DV + ED+RIDT R+ GSG
Sbjct: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+ ++ E+SQH N+ +A+KVL A+LY++ER R+ RS
Sbjct: 234 GQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R QIGSGDRSERIRTYNF QGR+TDHR+ +T + + +++G +D I+ LL +
Sbjct: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKM 351
Query: 415 IAS 417
I S
Sbjct: 352 IGS 354
>gi|237793457|ref|YP_002861009.1| peptide chain release factor 1 [Clostridium botulinum Ba4 str. 657]
gi|259585216|sp|C3KYH5.1|RF1_CLOB6 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229260673|gb|ACQ51706.1| peptide chain release factor 1 [Clostridium botulinum Ba4 str. 657]
Length = 358
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 161/360 (44%), Positives = 244/360 (67%), Gaps = 10/360 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DKD+ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKDLREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + AI G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDE+SQ NK KA+KVL A+L+E + S ++ R Q+
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
G+GDRSERIRTYN+PQGR+TDHR+G+T + + ++G ++D I+AL+ + + + + G
Sbjct: 297 GTGDRSERIRTYNYPQGRITDHRIGLTLYKLETFLDG-DIDEVIEALVTEDQAEKMKDLG 355
>gi|339499058|ref|YP_004697093.1| peptide chain release factor 1 [Spirochaeta caldaria DSM 7334]
gi|338833407|gb|AEJ18585.1| Peptide chain release factor 1 [Spirochaeta caldaria DSM 7334]
Length = 356
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 234/350 (66%), Gaps = 12/350 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
M +R+ ++ R L+ V P SK K R++ +SE+ +E + L+
Sbjct: 1 MNERLASLLSRFEVLDKEVQDPN-----LSKDQKRYREVMREHAQLSEVVAAHRECEALE 55
Query: 125 SLIYECS------EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ I E +D +M ++A EEL + + Q L L+PKD DE++ I+E+R
Sbjct: 56 ASIAETQSLIQNEKDPEMKELAKEELKELEVKLQEAQDRLKFLLIPKDPLDEKNIIMEIR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
G GG+EA+LFA D+F+MY RY++ KGWK EV+ + E++L G KE +I+G VY L+
Sbjct: 116 GGAGGDEAALFAADLFRMYSRYAENKGWKIEVMSMNETELGGLKEIIFSIAGKNVYENLR 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
+ESG+HRVQRVP TE SGR+HTS V+VA+LP+A+E ++ ++ EDLRID R+GG GGQ
Sbjct: 176 YESGVHRVQRVPATEASGRIHTSTVTVAVLPEAEETEIEIKQEDLRIDVMRAGGPGGQCV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+THIP+G+ + QDE+SQ NKAKA+++L A+LYEME + R++ R Q
Sbjct: 236 NTTDSAVRITHIPSGIVVHCQDEKSQIKNKAKAMRILRARLYEMEEQKAQAERAEARKSQ 295
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
+G+GDRSERIRTYNFPQ R+TDHR+ +T + + +M+G+ ++F DAL L
Sbjct: 296 VGTGDRSERIRTYNFPQNRLTDHRINLTLYKLDLIMQGDVQELF-DALKL 344
>gi|333898002|ref|YP_004471876.1| peptide chain release factor 1 [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333113267|gb|AEF18204.1| Peptide chain release factor 1 [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 353
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 239/356 (67%), Gaps = 6/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ PE+ E+ K KE L + + E + + +I+
Sbjct: 1 MIDKLKAIEDRYVELSQKLSDPESMKDMDEWKKMAKEQAGLEEIVQKYREYKKVKDDIES 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI D ++ DMA +EL ++E+ L + + LLPKD DE+D I+E+RAG G
Sbjct: 61 TKELI---EMDDELKDMAEDELKSLEEKEESLLNEIKLLLLPKDPNDEKDVIMEIRAGAG 117
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KK WK+E++ ++L G+KE +I+G G Y +LKFESG
Sbjct: 118 GEEAALFAYDLFRMYTMYAEKKRWKYEIMSSNATELGGFKEVIFSIAGKGAYSRLKFESG 177
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+ ++VD+ + D++ID +RSGG GGQ NTT+
Sbjct: 178 VHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDIEINPNDIKIDVFRSGGHGGQSVNTTD 237
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ IS QDERSQ N+ +A+K+L AKLYEM R S R Q+G+G
Sbjct: 238 SAVRLTHIPTGIVISCQDERSQLQNRERAMKILRAKLYEMAREEKEREISMTRKLQVGTG 297
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
DRSERIRTYNFPQGRVTDHR+G+T + + +++G +LD IDALL + + + + S
Sbjct: 298 DRSERIRTYNFPQGRVTDHRIGLTLYKLQMVLDG-DLDEIIDALLAEDQAERLESM 352
>gi|223043916|ref|ZP_03613957.1| peptide chain release factor 1 [Staphylococcus capitis SK14]
gi|417906667|ref|ZP_12550448.1| peptide chain release factor 1 [Staphylococcus capitis VCU116]
gi|222442631|gb|EEE48735.1| peptide chain release factor 1 [Staphylococcus capitis SK14]
gi|341597669|gb|EGS40215.1| peptide chain release factor 1 [Staphylococcus capitis VCU116]
Length = 358
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ + K +KE L+ ++ + ++K++E++ ++ ++ E
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVEVYRSYKSKKEELEDIEEMLKE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ +DM EE E ++ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVDMLKEESASLKAELPEMEEELKILLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEAYGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG NLD IDAL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-NLDEIIDALTLSEQTEKLKELNN 355
>gi|95929013|ref|ZP_01311758.1| peptide chain release factor 1 [Desulfuromonas acetoxidans DSM 684]
gi|95134914|gb|EAT16568.1| peptide chain release factor 1 [Desulfuromonas acetoxidans DSM 684]
Length = 358
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 161/340 (47%), Positives = 231/340 (67%), Gaps = 5/340 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+E L++ P + ++ + +E +L + + + R Q+EI+ + L+ + +D DM
Sbjct: 17 VEGLLSDPTVLSDQNKFRELTREHAELSEPVEVYRRYRQIQQEIEDNRELMRD--DDPDM 74
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EEL DE + L L +LPKD D ++ ILE+RAGTGG+EA+LFA D+F+
Sbjct: 75 REMAREELPALEDECEHLAEKLTLLMLPKDPNDGKNIILEIRAGTGGDEAALFAGDLFRA 134
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY++K WK E++ +ES + G+KE A ISG VY +LK+ESG HRVQRVP TE G
Sbjct: 135 YSRYAEKHRWKVEIMSSSESGVGGFKEVIAMISGENVYSRLKYESGTHRVQRVPETETQG 194
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ + DLRID YR+ G+GGQH N T SAVR+THIPTG+ +
Sbjct: 195 RIHTSACTVAVLPEAEEVDLEINPSDLRIDLYRASGAGGQHVNKTESAVRITHIPTGVVV 254
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
+ QDE+SQH NKA+A+KVL +++ + + H + R Q+GSGDRSERIRTYNFPQG
Sbjct: 255 ACQDEKSQHKNKARAMKVLRSRILDAMEAEKHAEMAADRKSQVGSGDRSERIRTYNFPQG 314
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
R TDHR+G+T + + +M+G +LD DAL + + +A
Sbjct: 315 RCTDHRIGLTLYKLDAIMQG-DLDEVFDALTTHYQAELMA 353
>gi|420254153|ref|ZP_14757170.1| peptide chain release factor 1 [Burkholderia sp. BT03]
gi|398049844|gb|EJL42242.1| peptide chain release factor 1 [Burkholderia sp. BT03]
Length = 398
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 209/294 (71%), Gaps = 2/294 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ A D+ ++L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 105 ELLSDASMKDFAEEEIRAARDQMEKLEGELQKMLLPKDPNDERNIFLEIRAGTGGDESAL 164
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 165 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGDAAYSKLKFESGGHRVQR 224
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 225 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 284
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 285 THLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 344
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
IRTYNFPQGR+TDHR+ +T + + +MEG +LD I AL+ + + + +AS G T
Sbjct: 345 IRTYNFPQGRLTDHRINLTLYRLEALMEG-DLDELIAALVSEHQAELLASLGDT 397
>gi|392412307|ref|YP_006448914.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfomonile
tiedjei DSM 6799]
gi|390625443|gb|AFM26650.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfomonile
tiedjei DSM 6799]
Length = 359
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 237/354 (66%), Gaps = 7/354 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
I RR L +++P+ + PA+ K KE L D + L +EID L+++I
Sbjct: 10 INRRYEELNEELSRPDVISDPAKLKKVAKEQSDLADIVKAYHTLSDILREIDDLEAIIA- 68
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+D ++++MA E+L + E ++ + LLPKD D+++ LE+RAGTGGEEA+LF
Sbjct: 69 AGDDPELVEMAREDLPQIKERESDVRQAINILLLPKDPNDDKNTFLEIRAGTGGEEAALF 128
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+ Y RY++ + W+ E++ + + G KE A I G G Y +LKFE G+HRVQRV
Sbjct: 129 AGDLFRAYCRYAEVRNWRVELMSSSPAAAGGIKEVIALIHGSGAYSRLKFERGVHRVQRV 188
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSAV+VA+LP+AD+V++ + +DL+ID YRS G GGQ NTT+SAVRVTH
Sbjct: 189 PTTESQGRIHTSAVTVAVLPEADDVEIDIDPKDLKIDVYRSSGPGGQSVNTTDSAVRVTH 248
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYE-MERSRIHLSRSKLRSEQIGSGDRSERI 368
+PT + ++ QDE+SQH NKAKALK+L A+L + ME R + SK R Q+GSGDRSERI
Sbjct: 249 LPTNLVVTCQDEKSQHKNKAKALKILKARLLDRMEEER-NAQISKERKNQVGSGDRSERI 307
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
RTYNFPQ RVTDHR+G+T + + ++EG+ LD ID L+ + AI G TQ
Sbjct: 308 RTYNFPQNRVTDHRIGLTLYKLDGVLEGK-LDEIIDPLIFHAQTQAIQE-GFTQ 359
>gi|289523200|ref|ZP_06440054.1| peptide chain release factor 1 [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503743|gb|EFD24907.1| peptide chain release factor 1 [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 358
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 239/351 (68%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+ER+ LE ++ P+ ++PA + KE ++ + E R QK ++ +L E
Sbjct: 11 LERKYQELETKLSDPDVISNPAVLQRLAKEHSEMSKVVEKYREYRQAQKRLEEALALTEE 70
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+D+D+ ++A EE + + L+ L LLPKD DER I+E+RAG GGEEA+LF
Sbjct: 71 --DDEDLRELAREEANQLKNIVEELEEELALLLLPKDPNDERSVIVEIRAGAGGEEAALF 128
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY+++K WK E++ E+ + GYKE + G Y LK+ESG+HRVQRV
Sbjct: 129 AADLYRMYVRYAERKRWKVELLTANETGIGGYKEIVFRVEGQDAYSVLKYESGVHRVQRV 188
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P+TE SGR+HTS +VA+LP+ DEVDV +R EDL+IDT+R+ G+GGQ+ N T+SAVR+TH
Sbjct: 189 PVTEASGRIHTSTATVAVLPEPDEVDVEIRPEDLKIDTFRASGAGGQYVNMTDSAVRITH 248
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ ++ QDERSQ N+AKA+++L AKLY+ME R + + R QIGSGDRSERIR
Sbjct: 249 IPTGIVVTCQDERSQLKNRAKAMQLLRAKLYDMEIRRQQEAMASERRGQIGSGDRSERIR 308
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYNFPQ RVTDHR+G+T H + +++EG +LD + AL +M+ + G+
Sbjct: 309 TYNFPQNRVTDHRIGLTLHNLDEILEG-DLDELLYALATADQMEKLKLLGA 358
>gi|27468634|ref|NP_765271.1| peptide chain release factor 1 [Staphylococcus epidermidis ATCC
12228]
gi|57867593|ref|YP_189289.1| peptide chain release factor 1 [Staphylococcus epidermidis RP62A]
gi|251812171|ref|ZP_04826644.1| peptide chain release factor 1 [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876474|ref|ZP_06285340.1| peptide chain release factor 1 [Staphylococcus epidermidis SK135]
gi|293366082|ref|ZP_06612770.1| peptide chain release factor RF1 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646882|ref|ZP_12296734.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU144]
gi|417656917|ref|ZP_12306595.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU028]
gi|417660256|ref|ZP_12309845.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU045]
gi|417909017|ref|ZP_12552767.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU037]
gi|417912470|ref|ZP_12556162.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU105]
gi|417913921|ref|ZP_12557582.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU109]
gi|418604057|ref|ZP_13167424.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU041]
gi|418607532|ref|ZP_13170762.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU057]
gi|418609372|ref|ZP_13172525.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU065]
gi|418613195|ref|ZP_13176211.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU117]
gi|418617908|ref|ZP_13180794.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU120]
gi|418622347|ref|ZP_13185099.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU123]
gi|418623907|ref|ZP_13186601.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU125]
gi|418627641|ref|ZP_13190213.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU126]
gi|418629960|ref|ZP_13192453.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU127]
gi|418663751|ref|ZP_13225260.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU081]
gi|419768484|ref|ZP_14294606.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-250]
gi|419771604|ref|ZP_14297655.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-K]
gi|420166561|ref|ZP_14673245.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM088]
gi|420171719|ref|ZP_14678254.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM070]
gi|420173643|ref|ZP_14680134.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM067]
gi|420182089|ref|ZP_14688231.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM049]
gi|420186950|ref|ZP_14692974.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM039]
gi|420195935|ref|ZP_14701719.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM021]
gi|420202831|ref|ZP_14708419.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM018]
gi|420207939|ref|ZP_14713424.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM008]
gi|420210298|ref|ZP_14715727.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM003]
gi|420215230|ref|ZP_14720501.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05005]
gi|420216735|ref|ZP_14721933.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05001]
gi|420220977|ref|ZP_14725932.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04008]
gi|420223650|ref|ZP_14728545.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH08001]
gi|420226177|ref|ZP_14730999.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH06004]
gi|420228591|ref|ZP_14733340.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05003]
gi|420230977|ref|ZP_14735654.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04003]
gi|420233583|ref|ZP_14738191.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051668]
gi|420236013|ref|ZP_14740544.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051475]
gi|421608826|ref|ZP_16050038.1| peptide chain release factor 1 [Staphylococcus epidermidis AU12-03]
gi|32171533|sp|Q8CNI7.1|RF1_STAES RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|71153098|sp|Q5HMA4.1|RF1_STAEQ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|27316181|gb|AAO05315.1|AE016749_261 peptide chain release factor RF-1 [Staphylococcus epidermidis ATCC
12228]
gi|57638251|gb|AAW55039.1| peptide chain release factor 1 [Staphylococcus epidermidis RP62A]
gi|251804268|gb|EES56925.1| peptide chain release factor 1 [Staphylococcus epidermidis
BCM-HMP0060]
gi|281294726|gb|EFA87254.1| peptide chain release factor 1 [Staphylococcus epidermidis SK135]
gi|291319805|gb|EFE60163.1| peptide chain release factor RF1 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329726142|gb|EGG62614.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU144]
gi|329734173|gb|EGG70491.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU045]
gi|329735695|gb|EGG71978.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU028]
gi|341650682|gb|EGS74498.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU105]
gi|341654379|gb|EGS78126.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU109]
gi|341654657|gb|EGS78396.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU037]
gi|374404386|gb|EHQ75360.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU057]
gi|374405853|gb|EHQ76764.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU041]
gi|374407774|gb|EHQ78622.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU065]
gi|374411289|gb|EHQ82006.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU081]
gi|374816631|gb|EHR80832.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU117]
gi|374817169|gb|EHR81355.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU120]
gi|374826941|gb|EHR90816.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU123]
gi|374829087|gb|EHR92901.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU126]
gi|374829151|gb|EHR92964.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU125]
gi|374832479|gb|EHR96189.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU127]
gi|383359848|gb|EID37258.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-250]
gi|383361102|gb|EID38484.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-K]
gi|394233568|gb|EJD79169.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM088]
gi|394236834|gb|EJD82337.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM070]
gi|394239680|gb|EJD85115.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM067]
gi|394250553|gb|EJD95735.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM049]
gi|394256916|gb|EJE01840.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM039]
gi|394262536|gb|EJE07298.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM021]
gi|394269010|gb|EJE13555.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM018]
gi|394274959|gb|EJE19354.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM008]
gi|394276532|gb|EJE20870.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM003]
gi|394282510|gb|EJE26703.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05005]
gi|394285427|gb|EJE29506.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04008]
gi|394287148|gb|EJE31115.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH08001]
gi|394291414|gb|EJE35226.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05001]
gi|394292663|gb|EJE36403.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH06004]
gi|394294625|gb|EJE38296.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05003]
gi|394295860|gb|EJE39496.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04003]
gi|394299865|gb|EJE43393.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051668]
gi|394301649|gb|EJE45104.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051475]
gi|406655479|gb|EKC81906.1| peptide chain release factor 1 [Staphylococcus epidermidis AU12-03]
Length = 358
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 237/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T ++ +MEG NLD ++AL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLNQIMEG-NLDEIVEALTLSEQTEKLKELNN 355
>gi|218886539|ref|YP_002435860.1| peptide chain release factor 1 [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|226739101|sp|B8DLL6.1|RF1_DESVM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|63852197|dbj|BAD98449.1| peptide release factor 1 [Desulfovibrio vulgaris]
gi|218757493|gb|ACL08392.1| peptide chain release factor 1 [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 357
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 230/337 (68%), Gaps = 22/337 (6%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL-CLAIDEEK 152
+KA+ +L+++ D ELR +++K++LD A E+ +A +E K
Sbjct: 35 TKAHADLKEVVDVFRRYKELRQN-------------LADNKELLDDADPEIRSMAHEEAK 81
Query: 153 RLQSLL-------LKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
L+S + LLPKD DE++ I+E+RAGTGGEEA+LFA D+F+MY RY++ +G
Sbjct: 82 SLESAIPEIEQELQLLLLPKDPLDEKNTIVEIRAGTGGEEAALFAADLFRMYSRYAEIRG 141
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
WK E++ ESD GYKE A I G VY +LKFESG HRVQRVP TE GR+HTSA +V
Sbjct: 142 WKVEILSANESDTGGYKEVIALIVGDKVYSRLKFESGTHRVQRVPATESQGRIHTSAATV 201
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
AILP+A+EVDV +R +D+RID +R+ G+GGQH N T SAVR+TH+P+G+ +S QDE+SQH
Sbjct: 202 AILPEAEEVDVEIRPDDIRIDVFRASGAGGQHVNKTESAVRITHMPSGIVVSCQDEKSQH 261
Query: 326 MNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGI 385
NKAKA+KVL ++L + E+ R H + R Q+GSGDRSERIRTYNFPQGRVTDHR+ +
Sbjct: 262 KNKAKAMKVLASRLLQAEQDRQHNEMAADRRSQVGSGDRSERIRTYNFPQGRVTDHRINL 321
Query: 386 THHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
T +++ +MEGE +F DAL + +A+ + Q
Sbjct: 322 TLYSLDRVMEGEAQALF-DALSTHAQTEALKAQADVQ 357
>gi|255065586|ref|ZP_05317441.1| peptide chain release factor 1 [Neisseria sicca ATCC 29256]
gi|255050411|gb|EET45875.1| peptide chain release factor 1 [Neisseria sicca ATCC 29256]
Length = 358
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 SLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQQAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKVKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|227524270|ref|ZP_03954319.1| peptide chain release factor 1 [Lactobacillus hilgardii ATCC 8290]
gi|227088501|gb|EEI23813.1| peptide chain release factor 1 [Lactobacillus hilgardii ATCC 8290]
Length = 361
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 235/343 (68%), Gaps = 3/343 (0%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE +LRD++ ++ + K++D +
Sbjct: 7 KLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDEE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ D++ +L+ L LLPKD DE++ I+E+ GG+E
Sbjct: 67 MLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
SLFAVD+F MY +Y++++GWK EV+ +E+++ G+KE I+G VY KLK+E+G HR
Sbjct: 127 GSLFAVDLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+K+L A++Y+ + + R IG+GDRS
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQYNAERKSAIGTGDRS 306
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M GE LD +DAL+L
Sbjct: 307 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMNGE-LDDIVDALIL 348
>gi|373454431|ref|ZP_09546297.1| peptide chain release factor 1 [Dialister succinatiphilus YIT
11850]
gi|371935706|gb|EHO63449.1| peptide chain release factor 1 [Dialister succinatiphilus YIT
11850]
Length = 360
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/343 (47%), Positives = 234/343 (68%), Gaps = 12/343 (3%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
+E R LE+ ++ P A + +KE +L D + E + + + K ++
Sbjct: 8 GMEARYVTLEDQLSDPSVIADQNRWRTLSKEHAELGDIVARYREYKEADQAVRDAKDILE 67
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLL---KSLLPKDDADERDCILEVRAGTGGEE 185
+ S+ D+ ++A E+L + EK+++ L L K L+PKD D ++ ILE+RAGTGGEE
Sbjct: 68 DKSQ-ADLHELAKEDLK---ENEKKMEELDLEIHKMLIPKDPNDGKNVILEIRAGTGGEE 123
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+ KMY +++++KGWK E+ E+DL G+KE + I G Y LKFESG+HR
Sbjct: 124 AALFAADLLKMYIKFAERKGWKLEIANANETDLGGFKEVTCTIEGKNAYSILKFESGVHR 183
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P TE GRVHTSAV+VA+LP+A++VDV +R EDLRID YRS G+GGQH N T+SA+
Sbjct: 184 VQRIPETESQGRVHTSAVTVAVLPEAEDVDVDIRREDLRIDVYRSSGAGGQHINKTSSAI 243
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL-RSEQIGSGDR 364
R+TH+PTGM ++ Q+ERSQ NK KAL++L ++LY+ + R +S+ R Q+GSGDR
Sbjct: 244 RITHLPTGMVVTCQNERSQRQNKEKALQILKSRLYD-QALRASISKEAADRKSQVGSGDR 302
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SERIRTYN+PQGRVTDHRV ++ + + D M G N+D +D L+
Sbjct: 303 SERIRTYNYPQGRVTDHRVNMSIYQLDDFMNG-NMDPILDRLM 344
>gi|297182635|gb|ADI18793.1| protein chain release factor a [uncultured SAR11 cluster bacterium
HF4000_37C10]
Length = 358
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/341 (45%), Positives = 229/341 (67%)
Query: 78 CLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
LE + + + +++ +K +R+ ++ + +KE L+ +I + DKD++
Sbjct: 16 TLEKELASGDINKKDFANKSKGYSSIREVINQARSYLSFKKEQAELEKIIEDKKSDKDII 75
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
++A EL + + + +L LLPKD+AD ++ ILE+RAGTGG EA+LF D++KMY
Sbjct: 76 ELAKNELIQLSKKREENEKILKVYLLPKDEADSKNAILEIRAGTGGLEATLFVADLYKMY 135
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
ER K W FE++ +++S+ G+KE I G +Y LKFESG+HRVQRVP TE GR
Sbjct: 136 ERVCLNKKWSFEIINLSKSEAGGFKEVILLIKGTNIYSFLKFESGVHRVQRVPETETQGR 195
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
VHTSA +VA+LP+A+E+DV + +DLRID +RS G GGQ NTT+SAVR+TH+PTG+ +S
Sbjct: 196 VHTSAATVAVLPEAEEIDVNINEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVS 255
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH N+AKA+K+L +++Y+ ER + RSK R QIGSGDRSERIRTYNFPQ R
Sbjct: 256 QQDEKSQHKNRAKAMKILRSRVYDAEREKKDKKRSKDRKNQIGSGDRSERIRTYNFPQSR 315
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
VTDHR+ +T H + + + G+ + F L +Q + +A+
Sbjct: 316 VTDHRINLTIHKLQEFLNGDAFEEFGRNLRIQDQEIKLANL 356
>gi|314934187|ref|ZP_07841548.1| peptide chain release factor 1 [Staphylococcus caprae C87]
gi|313653092|gb|EFS16853.1| peptide chain release factor 1 [Staphylococcus caprae C87]
Length = 358
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ + K +KE L+ ++ + ++K++E++ ++ ++ E
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVEVYRSYKSKKEELEDIEEMLKE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ +DM EE E ++ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVDMLKEESASLKAELPEMEEELKILLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEAYGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSER+R
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERVR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG NLD IDAL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-NLDEIIDALTLSEQTEKLKELNN 355
>gi|162147699|ref|YP_001602160.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209542323|ref|YP_002274552.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
gi|189039975|sp|A9HJ50.1|RF1_GLUDA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|161786276|emb|CAP55858.1| putative peptide chain release factor 1 [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530000|gb|ACI49937.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
Length = 352
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 243/352 (69%), Gaps = 21/352 (5%)
Query: 73 ERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE 132
E ++A E LV + ++KA++E +L + I ELR ++E ++L+
Sbjct: 16 ELQAALAEGLVGEA------FAKASREYAELEPIVDRIGELRLAEQEERQSQALLA---- 65
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLK-----SLLPKDDADERDCILEVRAGTGGEEAS 187
D +M ++A EL E+ R + +L+ ++LP+D+ADER ILE+R GG+EA+
Sbjct: 66 DPEMRELAEAEL-----EDLRARIPVLRQDIRIAMLPRDEADERSAILEIRPAAGGDEAA 120
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA ++F Y RY+ +GW+FE++ ES+L G +E A I+G GV+ +LK+ESG+HRVQ
Sbjct: 121 LFAAELFDAYRRYAALRGWRFEIMEFDESELGGLREGIANITGRGVFARLKYESGVHRVQ 180
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTS V+VA+LP+A +VDV++ + DLRID YR+ G+GGQH N T SAVR+
Sbjct: 181 RVPATESQGRIHTSTVTVAVLPEAGDVDVQINDGDLRIDVYRASGAGGQHVNKTESAVRI 240
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ +++Q+E+SQH N+AKA+K+L A+LYE ER+ H +R+ R Q+G+GDRSER
Sbjct: 241 THLPTGLVVAMQEEKSQHKNRAKAMKILMARLYERERAAAHATRAADRKSQVGTGDRSER 300
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGRVTDHR+ +T + I +M GE D F+DAL ++ +A+ G
Sbjct: 301 IRTYNFPQGRVTDHRINLTAYKIDRVMMGE-FDEFVDALTQDEQASLLAAEG 351
>gi|225848358|ref|YP_002728521.1| peptide chain release factor 1 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644346|gb|ACN99396.1| peptide chain release factor 1 [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 360
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 164/362 (45%), Positives = 243/362 (67%), Gaps = 13/362 (3%)
Query: 63 KIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
KI++Q + IE + LE L+ PE P++ KE + L + + L ++ +I
Sbjct: 4 KILDQ-IKNIEEKVKKLEQLLTDPEVLKDPSKIQSIAKEHKDLSEILSLYNQYEKVNFQI 62
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+ +K LI +ED E L + + + + L + LPKD DE++ ILE+R G
Sbjct: 63 EEVKQLINSTTEDDLRELAELELEELKQELSELEKKIEL-AFLPKDPNDEKNVILEIRQG 121
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGGEEA+LFA ++F+MY+RY+++ GWK EV+ + +D G KE A I G G Y +LK+E
Sbjct: 122 TGGEEAALFAAELFRMYQRYAERHGWKTEVLSIHPTDRGGVKEVIALIKGKGAYSRLKYE 181
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE SGR+HTS +VA+LP+A+EVD+ ++ EDL+I+T R+GG+GGQH NT
Sbjct: 182 SGVHRVQRVPETESSGRIHTSTATVAVLPEAEEVDIEIKPEDLKIETMRAGGAGGQHVNT 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE----MERSRIHLSRSKLRS 356
T+SAVR+TH+PTG+ + QDERSQ NK KA+++L A+L + +ER +I +K R
Sbjct: 242 TDSAVRITHLPTGIVVQCQDERSQLQNKLKAMQILRARLKDYYDRLEREKI----AKERK 297
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
EQ+G+G+RSE+IRTYNFPQ RVTDHRV T + I+D+++G +LD I+ L+ ++ + +A
Sbjct: 298 EQVGTGERSEKIRTYNFPQNRVTDHRVNYTSYRINDILDG-DLDEIIEVLIAKENEEKLA 356
Query: 417 SF 418
Sbjct: 357 KL 358
>gi|445059136|ref|YP_007384540.1| peptide chain release factor 1 [Staphylococcus warneri SG1]
gi|443425193|gb|AGC90096.1| peptide chain release factor 1 [Staphylococcus warneri SG1]
Length = 358
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/354 (45%), Positives = 236/354 (66%), Gaps = 11/354 (3%)
Query: 72 IERRSACLENLVNQPEASPA-----EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E R L +++ P+ +YSK EL+K D + ++K++E+ ++ +
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQAELQKTVD---VYRSYKSKKEELADIEEM 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E S DK+ ++M EE +E ++ L L+PKD DE+D I+E+RA GG+EA
Sbjct: 65 LNETS-DKEEIEMLKEESSSLKNELPEMEEQLKLLLIPKDPNDEKDVIVEIRAAAGGDEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+ +MY +Y++ +K E+V +ESD GYKE S ++SG G Y KLKFE+G HRV
Sbjct: 124 AIFAGDLMRMYSKYAEAHHFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR
Sbjct: 184 QRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVR 243
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSE
Sbjct: 244 ITHLPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSE 302
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
RIRTYN+PQ RVTDHR+G+T +S +MEG NLD IDAL L ++ D + +
Sbjct: 303 RIRTYNYPQSRVTDHRIGLTLQKLSQIMEG-NLDEIIDALTLSEQTDKLKELNN 355
>gi|170723617|ref|YP_001751305.1| peptide chain release factor 1 [Pseudomonas putida W619]
gi|229470352|sp|B1JEP6.1|RF1_PSEPW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|169761620|gb|ACA74936.1| peptide chain release factor 1 [Pseudomonas putida W619]
Length = 360
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 154/330 (46%), Positives = 228/330 (69%), Gaps = 4/330 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A + ++E ++ + E R Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 33 ARFRAYSREYSEVEPVIGAYKEWRKVQDDLEGAQALLKDA--DPDMREMAVEEVREAKEQ 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LVGLESQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEIIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPE 210
Query: 271 ADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
DE V + + DLR+DTYR+ G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A
Sbjct: 211 PDEQVAIEINPADLRVDTYRASGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRA 270
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
+A+ L AKL +M+ S + + R +GSGDRSERIRTYN+PQGRVTDHR+ +T ++
Sbjct: 271 RAMSWLSAKLNDMQTSAAQNAIASERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYS 330
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ D++ G +D I+ LL + + D +A+ G
Sbjct: 331 LDDILAG-GVDAVIEPLLAEYQADQLAALG 359
>gi|365873556|ref|ZP_09413089.1| peptide chain release factor 1 [Thermanaerovibrio velox DSM 12556]
gi|363983643|gb|EHM09850.1| peptide chain release factor 1 [Thermanaerovibrio velox DSM 12556]
Length = 357
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 234/350 (66%), Gaps = 5/350 (1%)
Query: 72 IERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
IE A +E + PE S E +K +L + E + K ++ K L+
Sbjct: 10 IEAALAEIEARMADPEVSNNVQEMQSLSKRHSELYPVVQAFKEYQRASKALEEAKELM-- 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
ED+DM +A EE+ + L+ L LLP+D D +D I+E+RAG GG+EA+LF
Sbjct: 68 SQEDEDMRALAREEVQRLSERLPELEQELKVLLLPRDPNDHKDVIIEIRAGAGGDEAALF 127
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY++++GW++E++ + E+ + GYKE + G G Y KLKFESG+HRVQR+
Sbjct: 128 AADLFRMYTRYTERQGWRYEIMEMNETGIGGYKEVVFLVKGDGAYSKLKFESGVHRVQRI 187
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGR+HTS +VA+LP+A++VDV++R EDL+IDTYR+ G+GGQ+ N T+SAVR+TH
Sbjct: 188 PATEASGRIHTSTATVAVLPEAEDVDVQVRPEDLKIDTYRASGAGGQYVNMTDSAVRITH 247
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ ++ QDERSQ N+AKA+++L A+LY+ME R + R Q+G+GDRSERIR
Sbjct: 248 IPTGLVVTCQDERSQLKNRAKAMQLLRARLYDMELQRQQAQMAAERKGQVGTGDRSERIR 307
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
TYN+PQ R+TDHR+G T + + +++G +L I+AL + + + + +
Sbjct: 308 TYNYPQNRLTDHRIGFTLYKLDQVLDG-DLYELIEALRMADQAEKLKTLA 356
>gi|441506396|ref|ZP_20988368.1| Peptide chain release factor 1 [Photobacterium sp. AK15]
gi|441425938|gb|ELR63428.1| Peptide chain release factor 1 [Photobacterium sp. AK15]
Length = 363
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 208/289 (71%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM +MA EE+ A E +RL L L+PKD DER+C +E+RAG GG+EA +FA
Sbjct: 73 DDPDMREMAQEEVKEAKSEIERLADELQVLLIPKDPNDERNCFIEIRAGAGGDEAGIFAG 132
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++ +GW+ EV+ +++ GYKE A ++G GVYG LKFESG HRVQRVP
Sbjct: 133 DLFRMYSKYAESRGWRVEVMSANDAEHGGYKEMIAKVNGEGVYGTLKFESGGHRVQRVPA 192
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VAILP+ E ++ + DL+IDT+R+ G+GGQH NTT+SA+R+TH+
Sbjct: 193 TESQGRVHTSACTVAILPEIPEAEIPEINTGDLKIDTFRASGAGGQHVNTTDSAIRITHL 252
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E + H + R +GSGDRS+RIRT
Sbjct: 253 PTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRHAEEASTRRNLLGSGDRSDRIRT 312
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEGE LD + +L + + D +A+
Sbjct: 313 YNYPQGRVSDHRINLTVYRLNEVMEGE-LDCLLQPVLQEHQADQLAAMA 360
>gi|206901386|ref|YP_002250520.1| peptide chain release factor 1 [Dictyoglomus thermophilum H-6-12]
gi|226739102|sp|B5YDB2.1|RF1_DICT6 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|206740489|gb|ACI19547.1| peptide chain release factor 1 [Dictyoglomus thermophilum H-6-12]
Length = 367
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 241/357 (67%), Gaps = 4/357 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQK 118
L K++ ++ IE+R +ENL+ + E + + Y KE K+ + + SE + K
Sbjct: 2 LQKLVLDKLEEIEKRFKEIENLLTKEEIISDLSRYQSLLKERAKIEEIVEKFSEYKKLLK 61
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E + L+ + E +D+D+ +A EL + ++++ L LLPKD DE++ I+E+R
Sbjct: 62 EREDLEVMTKE-EQDEDLRSLAEAELEEIEKKLEKIEFDLKALLLPKDPNDEKNIIMEIR 120
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGGEEA+LFA D+F+MY Y+QKKGWK E+V + L GYKE + G G Y +LK
Sbjct: 121 AGTGGEEAALFAADLFRMYVGYAQKKGWKVEIVSSNPTGLGGYKEIIFIVEGKGAYSRLK 180
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP+TE SGR+HTS +VA+LP+ +EVDV + +DLRI+T+RSGG+GGQH
Sbjct: 181 FESGVHRVQRVPITESSGRIHTSTATVAVLPEMEEVDVEIDPKDLRIETFRSGGAGGQHV 240
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
N T S VR+THIP+G+ + QDERSQH N+ KA+KVL A+LYE + + R +Q
Sbjct: 241 NKTESGVRITHIPSGIVVQCQDERSQHQNREKAMKVLRARLYEYYQREKENEIASQRRQQ 300
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+G+G+RSE+IRTYNFPQ RVTDHR+ + + +++ GE LD FID L+L ++ + I
Sbjct: 301 VGTGERSEKIRTYNFPQRRVTDHRINYSSFQLEEVLSGE-LDEFIDRLILAEKEEQI 356
>gi|86138685|ref|ZP_01057258.1| peptide chain release factor 1 [Roseobacter sp. MED193]
gi|85824745|gb|EAQ44947.1| peptide chain release factor 1 [Roseobacter sp. MED193]
Length = 361
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/356 (45%), Positives = 239/356 (67%), Gaps = 7/356 (1%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I E+R+ I +R LE + + AS AE + +E +++ I+ R +++
Sbjct: 12 IPEERLEQILQRFQYLEAAMAEG-ASGAEIANLAREYSEIKPVAEQITAYRQLLTDLEDA 70
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++++ D DM ++A EE+ + L +LLPKD AD R +LE+R GTGG
Sbjct: 71 EAML----SDPDMKELAAEEIPELKAALPGAEEALQLALLPKDAADARPAMLEIRPGTGG 126
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+ +MY+RY++ +GWKFEV+ ++L G KE A I G V+ ++K+ESG+
Sbjct: 127 DEAALFAGDLLRMYQRYAEARGWKFEVIEEQATELGGIKEVVAHIKGENVFARMKYESGV 186
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP+TE GR+HTSA +VA+LP+A EVDV++ D+RIDT R+ G+GGQH NTT+S
Sbjct: 187 HRVQRVPVTESGGRIHTSAATVAVLPEAQEVDVQIDPSDIRIDTMRASGAGGQHVNTTDS 246
Query: 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGD 363
AVR+THIPTG+ + + E+SQH N+ A++VL A+LY++ER R+ RS R+ Q+GSGD
Sbjct: 247 AVRITHIPTGVMV-VSAEKSQHRNREIAMQVLRARLYDLERQRVDSERSADRASQVGSGD 305
Query: 364 RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RSERIRTYNFPQGR++DHR+ +T + + +M+G +LD IDAL + +A G
Sbjct: 306 RSERIRTYNFPQGRMSDHRINLTLYKLDQIMQG-DLDEIIDALTADNQARLLAEMG 360
>gi|376295460|ref|YP_005166690.1| peptide chain release factor 1 [Desulfovibrio desulfuricans ND132]
gi|323458021|gb|EGB13886.1| peptide chain release factor 1 [Desulfovibrio desulfuricans ND132]
Length = 355
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/350 (46%), Positives = 230/350 (65%), Gaps = 5/350 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
IE + LE + +P+ Y K +K L + + + +E+D + ++ +
Sbjct: 8 IEEKYVLLEQELAEPDIFNDQERYKKVSKAHADLSEVVEAFRRYKQLSQELDDNREMLND 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D ++ +MA E+ E ++ L LLPKD DE++ ILE+RAGTGG+EA+LF
Sbjct: 68 A--DPEIREMAKAEIDDLEGELPEIEEQLKVLLLPKDPMDEKNIILEIRAGTGGDEAALF 125
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY++ WK E + + GYKE A+ISG VY KLK+ESG HRVQRV
Sbjct: 126 AADLYRMYTRYAEINHWKVEEMSANHTGSGGYKEVIASISGDKVYSKLKYESGTHRVQRV 185
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSAV+VAI+P+A+EVD+ LR EDLR+D +RS G GGQ NTT+SA+RVTH
Sbjct: 186 PATESQGRIHTSAVTVAIMPEAEEVDIDLRPEDLRVDVFRSSGPGGQSVNTTDSAIRVTH 245
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IP+GM + QDE+SQH NKAKALKVL ++L ++E+ + + R Q+GSGDRSERIR
Sbjct: 246 IPSGMIVICQDEKSQHKNKAKALKVLRSRLLQIEQDKAKAEQEANRRSQVGSGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
TYN+PQGRV+DHR+ +T H + +MEGE D+ DAL+ + +A+ G
Sbjct: 306 TYNYPQGRVSDHRINLTLHQLPQIMEGELQDL-TDALISYFQAEALKRQG 354
>gi|83591213|ref|YP_431222.1| peptide chain release factor 1 [Moorella thermoacetica ATCC 39073]
gi|119361560|sp|Q2RFW0.1|RF1_MOOTA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|83574127|gb|ABC20679.1| bacterial peptide chain release factor 1 (bRF-1) [Moorella
thermoacetica ATCC 39073]
Length = 356
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/345 (47%), Positives = 230/345 (66%), Gaps = 4/345 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE R L L+ PE A P + K + L D + R E+
Sbjct: 1 MLEKLEQIEARYEELGRLMGDPEVIADPEQLQKHARAHAALEDIVTTFRRYRQVSNELAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K+++ E +D++ ++ E+ E++RL+ L LLPKD DE+D I+E+RAG G
Sbjct: 61 DKAMLEE-EKDREFQELLKAEIERLTGEQERLEQELKILLLPKDPNDEKDIIMEIRAGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY+RY++KK W+ E++ ++L G+KE + G GVY +LKFESG
Sbjct: 120 GEEAALFAGDLFRMYQRYAEKKRWRTEIISSHPTELGGFKEIIFQVEGQGVYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+A+EVDV ++ EDLR+D + S G GGQ NTT
Sbjct: 180 VHRVQRIPTTESGGRIHTSTATVAVLPEAEEVDVEIKPEDLRVDIFCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ +S QDE+SQ NK KA++VL A+L +M R+ ++ R Q+GSG
Sbjct: 240 SAVRITHLPTGLVVSCQDEKSQLKNKEKAMRVLRARLLDMARAEREGELAEERRSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
DRSERIRTYNFPQ RVTDHR+G+T H + ++ GE LD IDAL+
Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTLHHLDQVLAGE-LDEIIDALV 343
>gi|221632126|ref|YP_002521347.1| peptide chain release factor 1 [Thermomicrobium roseum DSM 5159]
gi|221155596|gb|ACM04723.1| peptide chain release factor 1 [Thermomicrobium roseum DSM 5159]
Length = 363
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 241/349 (69%), Gaps = 12/349 (3%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQ 117
D + +EQR +ER+ A P+ + P ++ +E +L + + L +L+
Sbjct: 10 DKLAELEQRFDEVERQLA-------DPDVATDPQRVAQLARERAELEEIVALYRQLKDID 62
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
+++ + L+ +ED D++++A EE+ + + + L + L+P+D DE+D I+E+
Sbjct: 63 RQVAQAEELLE--AEDPDLVELAAEEIDRLREYRETIYQELRRRLVPRDPNDEKDVIVEI 120
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEA+LFA D+F+MY RY++++GWK EV+ + ++L G+KE + G G Y
Sbjct: 121 RAGTGGEEAALFAADLFRMYTRYAERQGWKVEVLSSSPTELGGFKEIIFEVRGKGAYSHF 180
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
K ESG+HRVQRVP+TE SGR+HTS +VA+LP+ADEV+V + +DLRI+ +RS G GGQ
Sbjct: 181 KHESGVHRVQRVPITESSGRIHTSTATVAVLPEADEVEVHIDEDDLRIEVFRSSGHGGQS 240
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVR+TH+PTG+ +S QDERSQ N+ KA+ VL A+LYE++R ++ R+ LR +
Sbjct: 241 VNTTDSAVRITHLPTGIVVSCQDERSQLKNRLKAMAVLRARLYELQRRKLEEERTGLRRQ 300
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
Q+G+G+R+E+IRTYNFPQ RVTDHR+ +T + + +++GE +DIFI L
Sbjct: 301 QVGTGERAEKIRTYNFPQDRVTDHRLKLTVNNLPAVLDGE-IDIFIQEL 348
>gi|304415271|ref|ZP_07395967.1| peptide chain release factor 1 [Candidatus Regiella insecticola
LSR1]
gi|304282877|gb|EFL91344.1| peptide chain release factor 1 [Candidatus Regiella insecticola
LSR1]
Length = 360
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 156/327 (47%), Positives = 226/327 (69%), Gaps = 6/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L+D + Q++I+ K ++ +D +M ++A +EL A +
Sbjct: 35 FRTLSREYAQLKDISLCFKQWDGLQEDIETAKKML----DDLEMRELAQDELKEAKIRSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L LLP+D DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK EV+
Sbjct: 91 ALEQKLQVLLLPQDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAETRRWKMEVIN 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ E + GYKE I+G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P
Sbjct: 151 INEGEKGGYKEVITKITGNGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPVLP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E +V + + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKA
Sbjct: 211 ETEVLEISDNDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
VL A++ E ER + +++ R +GSGDRS+R RTYNFPQGRVTDHR+ +T + +
Sbjct: 271 KSVLAARIREAERQKRQQTQASERRNLLGSGDRSDRSRTYNFPQGRVTDHRINLTLYRLD 330
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASF 418
++MEG+ LDI I+ ++ + + D +A+
Sbjct: 331 EVMEGK-LDILIEPIVQEYQADQLAAL 356
>gi|20806672|ref|NP_621843.1| peptide chain release factor 1 [Thermoanaerobacter tengcongensis
MB4]
gi|22096035|sp|Q8RD98.1|RF1_THETN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|20515122|gb|AAM23447.1| Protein chain release factor A [Thermoanaerobacter tengcongensis
MB4]
Length = 356
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 244/356 (68%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ AIE R L ++ P ++ E+ K KE + D + E + +EI
Sbjct: 1 MIEKLQAIEDRYVELSQKISDPNVISNVEEWRKYVKEHAAIEDIVLKYREYKKVLEEIKA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ S+D+++ +MA EEL +++++L + LLPKD DE++ I+E+RAG G
Sbjct: 61 TEELL--SSQDEELKEMAEEELSQLEEKKEKLMEEIKILLLPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ ++D+ G+KE +ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAYDLFRMYTMYAEKKGWKVEIMSANKTDIGGFKEVIFSISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+A+EVDV + D++ID +RS G GGQ NTT+
Sbjct: 179 VHRVQRIPTTEAGGRIHTSTATVAVLPEAEEVDVEINPNDIKIDVFRSSGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ ++ QDERSQ N+ +ALK+L AKLYEM ++ R Q+G+G
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALKEQQREIAEARKSQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+RSERIRTYNFPQGRVTDHR+G+T + + ++++GE LD IDAL+L + + + +
Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYKLQEVLDGE-LDEIIDALILNDQAEKLKNM 353
>gi|259418822|ref|ZP_05742739.1| peptide chain release factor 1 [Silicibacter sp. TrichCH4B]
gi|259345044|gb|EEW56898.1| peptide chain release factor 1 [Silicibacter sp. TrichCH4B]
Length = 444
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/315 (49%), Positives = 222/315 (70%), Gaps = 8/315 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+LR ++I + L+ + +E D DM +A EE+ + L +LLP
Sbjct: 131 SDLRPVAEQIRAYRQLLSDLAEAEEMLADPDMKALAEEEIPTLKAALPEAEHALQLALLP 190
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
KD+AD R ILE+R GTGG+EA+LFA D+++MY RY++ +GWK +V+ S+L G KE
Sbjct: 191 KDEADSRAAILEIRPGTGGDEAALFAGDLYRMYSRYAEAQGWKIDVIEEQVSELGGLKEL 250
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A I+G GV+ +LK+ESG+HRVQRVP+TE GR+HTSA +VA+LP+A++VD+++ DLR
Sbjct: 251 VARINGDGVFARLKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDIKIDANDLR 310
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
IDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL +LY++ER
Sbjct: 311 IDTMRSSGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQHRNREIAMQVLKTRLYDLER 369
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
RI RS R+ Q+GSGDRSERIRTYNFPQGR++DHR+ +T + + +M G +LD ID
Sbjct: 370 QRIDSERSADRASQVGSGDRSERIRTYNFPQGRMSDHRINLTLYKLEQIM-GGDLDEIID 428
Query: 405 ALLLQQEMDAIASFG 419
AL+ + + +A G
Sbjct: 429 ALISEHQAKLLAEMG 443
>gi|390933445|ref|YP_006390950.1| Peptide chain release factor 1 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568946|gb|AFK85351.1| Peptide chain release factor 1 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 353
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 239/356 (67%), Gaps = 6/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ PE+ E+ + KE L + + E + + +I+
Sbjct: 1 MIDKLKAIEDRYVELSQKLSDPESMKDMDEWKRMAKEQAGLEEIVQKYREYKKVKDDIES 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI D ++ DMA EEL ++E+ L + + LLPKD DE+D I+E+RAG G
Sbjct: 61 TKELI---ETDDELKDMAEEELKSLEEKEESLLNEIKLLLLPKDPNDEKDVIMEIRAGAG 117
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KK WK+E++ ++L G+KE +I+G G Y +LKFESG
Sbjct: 118 GEEAALFAYDLFRMYTMYAEKKRWKYEIMSSNATELGGFKEVIFSIAGKGAYSRLKFESG 177
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+ ++VD+ + D++ID +RSGG GGQ NTT+
Sbjct: 178 VHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDIEINPNDIKIDVFRSGGHGGQSVNTTD 237
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ IS QDERSQ N+ +A+K+L AKLYEM R S R Q+G+G
Sbjct: 238 SAVRLTHIPTGIVISCQDERSQLQNRERAMKILRAKLYEMAREEKEREISMTRKLQVGTG 297
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
DRSERIRTYNFPQGRVTDHR+G+T + + +++G +LD IDALL + + + + S
Sbjct: 298 DRSERIRTYNFPQGRVTDHRIGLTLYKLQMVLDG-DLDEIIDALLAEDQAERLESM 352
>gi|254419936|ref|ZP_05033660.1| peptide chain release factor 1 [Brevundimonas sp. BAL3]
gi|196186113|gb|EDX81089.1| peptide chain release factor 1 [Brevundimonas sp. BAL3]
Length = 355
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 230/330 (69%), Gaps = 13/330 (3%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + D++ ++ LR + +++ + + D +M MA +EL + +
Sbjct: 35 SKEHAELKPVADAVQGLARLRAEMADLEVMAA-------DPEMAAMAQDELRDLTERLPQ 87
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
++ + L P+D + +LEVRAGTGG+EA+LFA D+F+MY RY+ +GW+ E+
Sbjct: 88 MERDVALLLAPRDADENASAVLEVRAGTGGDEAALFAGDLFRMYSRYAATRGWRIELDSA 147
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
TE D GYKE A ++G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+ ++
Sbjct: 148 TEGDAGGYKEIIATVTGDGVFGRLKFESGVHRVQRVPTTEAGGRIHTSAATVAVLPEVED 207
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V++ + +D+RIDT+R+ GSGGQH N T+SAVR+TH+PTG+ ++ E+SQH+N+ KA+K
Sbjct: 208 VEIEILEKDIRIDTFRASGSGGQHVNKTDSAVRITHLPTGI-VATSSEKSQHVNRDKAMK 266
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
L +LY+M+R L+R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T H++ +
Sbjct: 267 NLRVRLYDMQRQAKDLARADSRKSQVGSGDRSERIRTYNFPQGRVTDHRIGLTLHSLPQI 326
Query: 394 MEGENLDIFIDALLLQQE----MDAIASFG 419
+EG +LD ++AL+ + + D A FG
Sbjct: 327 LEG-DLDPMLNALIAEDQAARLADLEAEFG 355
>gi|239637411|ref|ZP_04678393.1| peptide chain release factor 1 [Staphylococcus warneri L37603]
gi|239597011|gb|EEQ79526.1| peptide chain release factor 1 [Staphylococcus warneri L37603]
Length = 358
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/354 (45%), Positives = 236/354 (66%), Gaps = 11/354 (3%)
Query: 72 IERRSACLENLVNQPEASPA-----EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E R L +++ P+ +YSK EL+K D + ++K++E+ ++ +
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQAELQKTVD---VYRSYKSKKEELADIEEM 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E S DK+ ++M EE +E ++ L L+PKD DE+D I+E+RA GG+EA
Sbjct: 65 LNETS-DKEEIEMLKEESSSLKNELPEMEEQLKLLLIPKDPNDEKDVIVEIRAAAGGDEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+ +MY +Y++ +K E+V +ESD GYKE S ++SG G Y KLKFE+G HRV
Sbjct: 124 AIFAGDLMRMYSKYAEAHNFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR
Sbjct: 184 QRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVR 243
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSE
Sbjct: 244 ITHLPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSE 302
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
RIRTYN+PQ RVTDHR+G+T +S ++EG NLD IDAL L ++ D + +
Sbjct: 303 RIRTYNYPQSRVTDHRIGLTLQKLSQILEG-NLDEIIDALTLSEQTDKLKELNN 355
>gi|225849764|ref|YP_002729998.1| peptide chain release factor 1 [Persephonella marina EX-H1]
gi|254790894|sp|C0QTI3.1|RF1_PERMH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|225646004|gb|ACO04190.1| peptide chain release factor 1 [Persephonella marina EX-H1]
Length = 361
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/360 (46%), Positives = 244/360 (67%), Gaps = 19/360 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEA-----SPAEYSKANKELRKLRDSMHLISELRT 115
L K + Q++ I+ + LE ++ PE + +K +KE KL L E +
Sbjct: 2 LNKYLLQKLENIDEKLKKLEAALSDPEVLKDQKKLQQVAKEHKETEKLS---KLYKEYKK 58
Query: 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
K+I+ KSL+ + D++M +A EEL ++ L+ + LLPKD DE++ IL
Sbjct: 59 VLKDIEETKSLL--NNPDEEMRLLAEEELKNLNQRKEELEKEIQIELLPKDPNDEKNVIL 116
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+R G GGEEA+LFA ++F+MY+RY+++KGWK EV+ + +D G KE A I G G Y
Sbjct: 117 EIRQGAGGEEAALFAGELFRMYQRYAERKGWKVEVLSMHPTDRGGIKEVIALIKGQGAYS 176
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
+LKFESG+HRVQRVP TE SGR+HTS +VA+LP+A+EVD+ ++ E+L+I+T R+ G+GG
Sbjct: 177 RLKFESGVHRVQRVPETESSGRIHTSTATVAVLPEAEEVDIEIKPEELKIETMRASGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE----MERSRIHLSR 351
QH NTT+SAVR+THIPTG+ +S QDERSQ N+AKA+++L A+L + +ER +I
Sbjct: 237 QHVNTTDSAVRITHIPTGIVVSCQDERSQLQNRAKAMQILRARLKDYYDRLEREKI---- 292
Query: 352 SKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
K R Q+G+GDRSE+IRTYNFPQ RVTDHR+ T H + D+++G +LD ID L+ +++
Sbjct: 293 EKERRMQVGTGDRSEKIRTYNFPQNRVTDHRINYTSHRLHDILDG-DLDEIIDQLIAKEQ 351
>gi|170761198|ref|YP_001785468.1| peptide chain release factor 1 [Clostridium botulinum A3 str. Loch
Maree]
gi|238688740|sp|B1KSR1.1|RF1_CLOBM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|169408187|gb|ACA56598.1| peptide chain release factor 1 [Clostridium botulinum A3 str. Loch
Maree]
Length = 358
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 159/360 (44%), Positives = 245/360 (68%), Gaps = 10/360 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + A+ G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETISLNATDIGGFKEVTVAVKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDE+SQ NK KA+KVL A+L+E + S ++ R Q+
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
G+GDRSERIRTYN+PQGR+TDHR+G+T + + ++G ++D I+AL+ + + + + + G
Sbjct: 297 GTGDRSERIRTYNYPQGRITDHRIGLTLYKLETFLDG-DIDEAIEALVTEDQAEKMKNLG 355
>gi|418632436|ref|ZP_13194867.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU128]
gi|374832343|gb|EHR96058.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU128]
Length = 358
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 237/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS GSGGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGSGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T ++ +MEG +LD ++AL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLNQIMEG-HLDEIVEALTLSEQTEKLKELNN 355
>gi|188587462|ref|YP_001919007.1| peptide chain release factor 1 (bRF-1) [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229470350|sp|B2A3J0.1|RF1_NATTJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|179352149|gb|ACB86419.1| peptide chain release factor 1 (bRF-1) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 357
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 234/358 (65%), Gaps = 3/358 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ IE+R LE+L++ PE P + + +KE L + ++ + ++E +
Sbjct: 1 MLDKLEGIEKRYQELEDLMSDPEVINDPEKLKQYSKEHASLEEIVNKYRQYLETKQEFEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ E ED DM + +E+ ++ + + L LLPKD DE++ I+E+RAG G
Sbjct: 61 AKEMLEENDEDPDMEEFLKDEIPRLENQMQEIYDSLKILLLPKDPNDEKNVIVEIRAGAG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+++MY RY++ WK E++ E D+ G+KE I G Y +LKFESG
Sbjct: 121 GDEAALFAADLYRMYTRYAEIMNWKTEIMDSHEKDMGGFKEIVFMIEGKNAYSRLKFESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTS +VA+LP+A++V++ + +LRIDT+ + G GGQ NTT
Sbjct: 181 VHRVQRVPSTESSGRIHTSTATVAVLPEAEDVEIEIDTNELRIDTFCATGPGGQSVNTTQ 240
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH PTG+ +S QDE+SQH N+ KA+KVL A++Y+M ++ R Q+GSG
Sbjct: 241 SAVRITHEPTGVVVSCQDEKSQHKNRDKAMKVLRARIYDMYLEEQQQQEAEERKSQVGSG 300
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
DRSERIRTYNFPQGR+TDHR+ T H + ++EGE +D IDAL+ ++ + + G+
Sbjct: 301 DRSERIRTYNFPQGRITDHRINFTTHRLEQVLEGE-IDELIDALITTEQAEQLKKMGA 357
>gi|420200809|ref|ZP_14706449.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM031]
gi|394267553|gb|EJE12140.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM031]
Length = 358
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 238/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++++RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIKIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T ++ +MEG +LD ++AL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLNQIMEG-HLDEIVEALTLSEQTEKLKELNN 355
>gi|227510126|ref|ZP_03940175.1| peptide chain release factor 1 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190331|gb|EEI70398.1| peptide chain release factor 1 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 357
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 234/343 (68%), Gaps = 3/343 (0%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE +LRD++ ++ + K++D +
Sbjct: 7 KLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDEE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ D++ +L+ L LLPKD DE++ I+E+ GG+E
Sbjct: 67 MLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
SLFA D+F MY +Y++++GWK EV+ +E+++ G+KE I+G VY KLK+E+G HR
Sbjct: 127 GSLFAADLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+K+L A++Y+ + + R IG+GDRS
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQYNAERKSAIGTGDRS 306
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M GE LD +DAL+L
Sbjct: 307 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMNGE-LDDIVDALIL 348
>gi|153939567|ref|YP_001389502.1| peptide chain release factor 1 [Clostridium botulinum F str.
Langeland]
gi|168182252|ref|ZP_02616916.1| peptide chain release factor 1 [Clostridium botulinum Bf]
gi|170755459|ref|YP_001779766.1| peptide chain release factor 1 [Clostridium botulinum B1 str. Okra]
gi|384460586|ref|YP_005673181.1| peptide chain release factor 1 [Clostridium botulinum F str.
230613]
gi|387816368|ref|YP_005676712.1| peptide chain release factor 1 [Clostridium botulinum H04402 065]
gi|429247092|ref|ZP_19210368.1| peptide chain release factor 1 [Clostridium botulinum CFSAN001628]
gi|166223550|sp|A7G9P2.1|RF1_CLOBL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229576659|sp|B1IE21.1|RF1_CLOBK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|152935463|gb|ABS40961.1| peptide chain release factor 1 [Clostridium botulinum F str.
Langeland]
gi|169120671|gb|ACA44507.1| peptide chain release factor 1 [Clostridium botulinum B1 str. Okra]
gi|182674565|gb|EDT86526.1| peptide chain release factor 1 [Clostridium botulinum Bf]
gi|295317603|gb|ADF97980.1| peptide chain release factor 1 [Clostridium botulinum F str.
230613]
gi|322804409|emb|CBZ01959.1| peptide chain release factor 1 [Clostridium botulinum H04402 065]
gi|428755945|gb|EKX78540.1| peptide chain release factor 1 [Clostridium botulinum CFSAN001628]
Length = 358
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 244/360 (67%), Gaps = 10/360 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + AI G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDE+SQ NK KA+KVL A+L+E + S ++ R Q+
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
G+GDRSERIRTYN+PQGR+TDHR+G+T + + ++G ++D I+AL+ + + + + G
Sbjct: 297 GTGDRSERIRTYNYPQGRITDHRIGLTLYKLETFLDG-DIDEVIEALVTEDQAEKMKDLG 355
>gi|56697312|ref|YP_167678.1| peptide chain release factor 1 [Ruegeria pomeroyi DSS-3]
gi|81558450|sp|Q5LQM7.1|RF1_SILPO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56679049|gb|AAV95715.1| peptide chain release factor 1 [Ruegeria pomeroyi DSS-3]
Length = 351
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 238/356 (66%), Gaps = 7/356 (1%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I E+R+ I +R LE + AS ++ + KE LR + I+ R ++D
Sbjct: 2 IPEERLDQITQRFQYLEAAMADG-ASGSDIAALAKEYSDLRPVVEQIAAWRQLCADMDEA 60
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++++ D DM +A EEL L + L +LLPKD AD R +LE+R GTGG
Sbjct: 61 RAML----SDPDMKALAEEELPLLKARLPEAEQALQLALLPKDAADARPAMLEIRPGTGG 116
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+ +MY+RY++ +GWK E++ + E++L G KE A ISG V+ +LK+ESG+
Sbjct: 117 DEAALFAGDLLRMYQRYAEARGWKLELIELQETELGGIKEVVARISGENVFARLKYESGV 176
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A +VD+++ D+RIDT RS G+GGQH NTT+S
Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAQDVDIQIDPGDIRIDTMRSSGAGGQHVNTTDS 236
Query: 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGD 363
AVR+TH+P+G+ ++ E+SQH N+ A++VL +LY++ER R+ RS RS Q+G+GD
Sbjct: 237 AVRITHLPSGIVVT-SSEKSQHRNREIAMQVLKTRLYDLERQRLDRERSASRSAQVGTGD 295
Query: 364 RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RSERIRTYNFPQGR+TDHR+ +T + + +M+G +LD IDAL + +A G
Sbjct: 296 RSERIRTYNFPQGRMTDHRINLTLYKLDAVMQG-DLDEVIDALAADGQARMLAEMG 350
>gi|390943057|ref|YP_006406818.1| peptide chain release factor 1 (bRF-1) [Belliella baltica DSM
15883]
gi|390416485|gb|AFL84063.1| bacterial peptide chain release factor 1 (bRF-1) [Belliella baltica
DSM 15883]
Length = 358
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 239/359 (66%), Gaps = 8/359 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A++ R + L+ QP+A ++Y+K +KE + L + L+ E +D
Sbjct: 1 MLDKLQALKDRFIEVGQLIIQPDAMSDMSKYTKLSKEYKDLEKVVELLDEYSLV---LDN 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+KS I E +D D +MA EL D + +L+ L + L+PKD D +DCILE+R G
Sbjct: 58 IKSSKEILEKEKDPDFRNMAKAELDELKDRQIQLEEDLKQQLIPKDPNDSKDCILEIRGG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA++FA D+F+MY+R+ K+GWK V+ +T GYKE + I+G VYG +KFE
Sbjct: 118 TGGDEAAIFAGDLFRMYQRFCDKQGWKLTVLDLTFGSSGGYKEIISTITGADVYGMMKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GRVHTSA SVA+LP+ DEV+V + ++R DTY S G GGQ NT
Sbjct: 178 SGVHRVQRVPMTETQGRVHTSAASVAVLPEMDEVEVNIDMNEVRKDTYCSSGPGGQSVNT 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+THIP+G+ ++ QDE+SQ N KALKVL ++LYE+E ++ + + R +G
Sbjct: 238 TYSAVRLTHIPSGLVVTCQDEKSQIKNFEKALKVLRSRLYEIELAKHNDAVGAQRKSMVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SGDRS++IRTYN+PQ RVTDHR+ T + + D+MEG N++ FI AL + ++ + + G
Sbjct: 298 SGDRSDKIRTYNYPQSRVTDHRINKTVYNLPDVMEG-NIEDFISALRFAENVEKMKTSG 355
>gi|325273244|ref|ZP_08139524.1| peptide chain release factor 1 [Pseudomonas sp. TJI-51]
gi|324101621|gb|EGB99187.1| peptide chain release factor 1 [Pseudomonas sp. TJI-51]
Length = 360
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/309 (49%), Positives = 219/309 (70%), Gaps = 4/309 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D DM +MA EE+ A ++ L++ L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDMREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 NVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S +
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA 291
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
+ R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G +D I+ LL +
Sbjct: 292 IASERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSG-GVDAVIEPLLAEY 350
Query: 411 EMDAIASFG 419
+ D +A+ G
Sbjct: 351 QADQLAALG 359
>gi|187918069|ref|YP_001883632.1| peptide chain release factor 1 [Borrelia hermsii DAH]
gi|238689283|sp|B2RZQ6.1|RF1_BORHD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119860917|gb|AAX16712.1| bacterial peptide chain release factor 1 [Borrelia hermsii DAH]
Length = 357
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 238/357 (66%), Gaps = 32/357 (8%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
IKI+E+++ I NLV + EY+K KE + + +++ K+ E +
Sbjct: 13 IKILEEKLQDI--------NLV----KNQKEYAKTVKE-------YNYLEKIKAKKDEYE 53
Query: 122 GLKSLIYECS------EDKDMLDMATEELC---LAIDEEKRLQSLLLKSLLPKDDADERD 172
+ S I E E+ +M ++ +EL L DE + + +LL L +D+ D ++
Sbjct: 54 NILSQINENQKILSEEENLEMKELVKQELAHLNLKKDEVEHMIKILL---LHQDENDSKN 110
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
I+E+RAGTGGEEA+LFA ++++MY +YS+KK WK E++ E++L G+KE S I G
Sbjct: 111 IIIEIRAGTGGEEAALFAHNLYEMYTKYSEKKKWKTELINFNETELGGFKEVSFEIKGKD 170
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
V+ KLK ESG+HRVQRVP+TE +GR+ TSA +VA+LP+ ++ D+ + +DLRID YRS G
Sbjct: 171 VFKKLKHESGVHRVQRVPITESNGRLQTSAATVAVLPEVEDTDIEINEKDLRIDVYRSSG 230
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRS 352
+GGQH NTT+SAVR+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E + RS
Sbjct: 231 AGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFENLKKQEQRS 290
Query: 353 KLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
R +Q+GSGDRSERIRTYNFPQ RVTDHR I+ + + ++M+GE LD +D L L+
Sbjct: 291 NDRKQQVGSGDRSERIRTYNFPQNRVTDHRANISLYKLEEIMQGE-LDFLLDTLALK 346
>gi|192360464|ref|YP_001981172.1| peptide chain release factor 1 [Cellvibrio japonicus Ueda107]
gi|238692456|sp|B3PJP4.1|RF1_CELJU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|190686629|gb|ACE84307.1| peptide chain release factor 1 [Cellvibrio japonicus Ueda107]
Length = 360
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/304 (51%), Positives = 217/304 (71%), Gaps = 8/304 (2%)
Query: 119 EIDGLKSLIYECSEDKDMLDMATEEL--CLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+I+ K LI E D DM +MA EEL C A E L+ L K LLPKD DE++C LE
Sbjct: 61 DIEEAKHLIAEG--DADMREMAEEELEGCEARLEPTELE--LQKLLLPKDPNDEKNCYLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
VRAGTGG+EA++F+ D+F+MY RY++ +GW+ E++ +E + G+KE + +SG GVY K
Sbjct: 117 VRAGTGGDEAAIFSGDLFRMYSRYAETQGWRVEILSQSEGEHGGFKEIISLVSGSGVYSK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA++P+ADE++ V + DLRIDTYR+ G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRIHTSACTVAVMPEADELEEVNINKADLRIDTYRASGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH N T+SA+R+THIPTG+ + QDERSQH N+A+A+ +L KL M+ H S S+ R
Sbjct: 237 QHVNKTDSAIRITHIPTGIVVECQDERSQHKNRARAMSLLATKLKTMQEEAAHKSISEER 296
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+GSGDRSERIRTYN+PQGRVTDHR+ +T +++ +M+G +L+ I L + + D +
Sbjct: 297 RNLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDAVMQG-DLEPVIGPLANEYQADQL 355
Query: 416 ASFG 419
A+
Sbjct: 356 AAIA 359
>gi|418618975|ref|ZP_13181818.1| peptide chain release factor 1 [Staphylococcus hominis VCU122]
gi|374825836|gb|EHR89755.1| peptide chain release factor 1 [Staphylococcus hominis VCU122]
Length = 358
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 235/351 (66%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ PE P + K +KE L+ ++ + + ++K++E+ + ++ E
Sbjct: 8 VEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAEIDEMLTE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIEMLKEEASGLKSELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ + +K E+V ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ I+ E+SQ N+ KALKVL A+LY+M+ + R +G+GDRSER+R
Sbjct: 247 IPTGI-IATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRSERVR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG LD IDAL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLDQIMEG-KLDEIIDALTLSEQTEKLKELNN 355
>gi|366163504|ref|ZP_09463259.1| peptide chain release factor 1 [Acetivibrio cellulolyticus CD2]
Length = 360
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/357 (45%), Positives = 241/357 (67%), Gaps = 4/357 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A E R + + ++ P + EY K KE +L++ + E + +EI
Sbjct: 1 MFDRLQAAENRYEEMNHKLSDPAVIENQDEYRKLMKEHAELQELVGKYGEYKKVTQEIAD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ + DKD +M EL A + ++++ L LLPKD DE+D I+E+R G G
Sbjct: 61 AKELLND-KLDKDFREMVEMELKEAEEGLEKIKKELKILLLPKDPNDEKDVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA +F+MY RY+++ GWK E++ +++ G+KE AI G G + KLKFESG
Sbjct: 120 GEEAALFAGVLFRMYTRYAERCGWKTEMLDSNPTEIGGFKEVVFAIEGNGAFSKLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE +GR+HTS V+VA+LP+ +EVDV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRIPETEANGRIHTSTVTVAVLPEVEEVDVDINPNDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SA+R+THIPTG+ + QD+RSQ+ NK KA++VL +KLYE+ + + + ++ R Q+G+G
Sbjct: 240 SAIRITHIPTGLVVCCQDQRSQYKNKDKAMRVLRSKLYEIAQEQQNSEIAQARKGQVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
DRSERIRTYN+PQGR+TDHR+G+T + + ++EG ++D IDAL+ + + + S G
Sbjct: 300 DRSERIRTYNYPQGRMTDHRIGLTLYKLESILEG-DMDEVIDALITTDQAERLGSGG 355
>gi|227513055|ref|ZP_03943104.1| peptide chain release factor 1 [Lactobacillus buchneri ATCC 11577]
gi|227083630|gb|EEI18942.1| peptide chain release factor 1 [Lactobacillus buchneri ATCC 11577]
Length = 361
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 234/343 (68%), Gaps = 3/343 (0%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE +LRD++ ++ + K++D +
Sbjct: 7 KLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDEE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ D++ +L+ L LLPKD DE++ I+E+ GG+E
Sbjct: 67 MLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
SLFA D+F MY +Y++++GWK EV+ +E+++ G+KE I+G VY KLK+E+G HR
Sbjct: 127 GSLFAADLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+K+L A++Y+ + + R IG+GDRS
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQYNAERKSAIGTGDRS 306
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M GE LD +DAL+L
Sbjct: 307 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMNGE-LDDIVDALIL 348
>gi|228474912|ref|ZP_04059641.1| peptide chain release factor 1 [Staphylococcus hominis SK119]
gi|228271144|gb|EEK12524.1| peptide chain release factor 1 [Staphylococcus hominis SK119]
Length = 358
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 235/351 (66%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ PE P + K +KE L+ ++ + + ++K++E+ + ++ E
Sbjct: 8 VEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAEIDEMLTE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIEMLKEEALGLKSELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ + +K E+V ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ I+ E+SQ N+ KALKVL A+LY+M+ + R +G+GDRSER+R
Sbjct: 247 IPTGI-IATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRSERVR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG LD IDAL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLDQIMEG-KLDEIIDALTLSEQTEKLKELNN 355
>gi|420212554|ref|ZP_14717903.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM001]
gi|394279675|gb|EJE23978.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM001]
Length = 358
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 237/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ES+ GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESNHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T ++ +MEG NLD ++AL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLNQIMEG-NLDEIVEALTLSEQTEKLKELNN 355
>gi|335041017|ref|ZP_08534135.1| Peptide chain release factor 1 [Caldalkalibacillus thermarum
TA2.A1]
gi|334179167|gb|EGL81814.1| Peptide chain release factor 1 [Caldalkalibacillus thermarum
TA2.A1]
Length = 356
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 157/349 (44%), Positives = 234/349 (67%), Gaps = 4/349 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ P + P + +KE +L +++ E + +++
Sbjct: 1 MFDRLRALEDRYEELNRLLSDPAVASDPKKLRDYSKEQSELEETVTCYREYKDVVRQLTD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
KS++ E +D ++ +M EE+ + ++++ L+ L LLPKD DE++ I+E+R G
Sbjct: 61 AKSMLEEKLDD-ELREMVKEEIAVLSEKKEALEERLKILLLPKDPNDEKNVIVEIRGAAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA LFA D++KMY RY++ KGWK EV+ +DL GYKE +I+G G Y +LK+ESG
Sbjct: 120 GDEACLFAGDLYKMYTRYAEDKGWKIEVIEAHPNDLGGYKEIIFSINGKGAYSRLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP+TE GR+HTS +VA+LP+A+E+DV + +D+R+D + S G GGQ NTT
Sbjct: 180 AHRVQRVPVTESGGRIHTSTATVAVLPEAEEIDVEIDEKDIRVDVFCSSGPGGQSVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ +S QDE+SQH NK KA+K+L A++Y+ + +R +G+G
Sbjct: 240 SAVRLTHIPTGIVVSCQDEKSQHKNKEKAMKILRARVYDKYLQEAQNEYASIRKSAVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
DRSERIRTYNFPQ RVTDHR+G+T H + ++ GE LD IDAL++ ++
Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTLHKLDQVLNGE-LDEIIDALIVHEQ 347
>gi|238756935|ref|ZP_04618123.1| Peptide chain release factor 1 [Yersinia aldovae ATCC 35236]
gi|238704765|gb|EEP97294.1| Peptide chain release factor 1 [Yersinia aldovae ATCC 35236]
Length = 360
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 224/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D H E R+ Q +ID + ++ ED +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTHCFKEWRSMQDDIDAAEMML----EDPEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ ++
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASDG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVYGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAVASERRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I ++ + + D +++
Sbjct: 335 GK-LDMLIQPIVQEYQADQLSAL 356
>gi|302381433|ref|YP_003817256.1| peptide chain release factor 1 [Brevundimonas subvibrioides ATCC
15264]
gi|302192061|gb|ADK99632.1| peptide chain release factor 1 [Brevundimonas subvibrioides ATCC
15264]
Length = 367
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 153/321 (47%), Positives = 228/321 (71%), Gaps = 15/321 (4%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL---CLAIDE 150
SK + E++ + D++ +++ RT+ +E+ + + D +M M +EL + E
Sbjct: 47 SKEHAEMKPVADAVLALAKARTEIEELQAMTA-------DPEMAAMVADELETLNARLPE 99
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
+R +LLL P+D + +LEVRAGTGG+EA+LFA D+F+MY RY+ +GWK E+
Sbjct: 100 MERDVALLLA---PRDADENASAVLEVRAGTGGDEAALFAGDLFRMYSRYASTRGWKVEL 156
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
TE D GYKE A ++G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 157 DSATEGDAGGYKEIIATVTGDGVFGRLKFESGVHRVQRVPTTEAGGRIHTSAATVAVLPE 216
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
++V++ ++++D+RIDTYR+ GSGGQH N T+SAVR+TH P+G+ ++ E+SQH+N+ K
Sbjct: 217 VEDVEIDIQDKDIRIDTYRASGSGGQHVNKTDSAVRITHFPSGIVVT-SSEKSQHVNRDK 275
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+K L +LY+M+R +RS R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T H++
Sbjct: 276 AMKNLRVRLYDMQRQMKDNARSDARKSQVGSGDRSERIRTYNFPQGRVTDHRIGLTLHSL 335
Query: 391 SDMMEGENLDIFIDALLLQQE 411
++EG +LD ++AL+ + +
Sbjct: 336 PQILEG-DLDALLNALIAEDQ 355
>gi|184153097|ref|YP_001841438.1| peptide chain release factor 1 [Lactobacillus reuteri JCM 1112]
gi|423335983|ref|ZP_17313734.1| peptide chain release factor 1 [Lactobacillus reuteri ATCC 53608]
gi|238058717|sp|B2G676.1|RF1_LACRJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|183224441|dbj|BAG24958.1| peptide chain release factor 1 [Lactobacillus reuteri JCM 1112]
gi|337729186|emb|CCC04310.1| peptide chain release factor 1 [Lactobacillus reuteri ATCC 53608]
Length = 360
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 239/343 (69%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ ++ + + I +
Sbjct: 7 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNQYKKVTQTISDDEE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E ++D D+ + EEL A +E+ +L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 67 LLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 125
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 126 ASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAHR 185
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 186 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 245
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L +++Y+ + + + + R + IG+GDRS
Sbjct: 246 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQQEQSAYDQKRKDAIGTGDRS 305
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M G +LD I+AL++
Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAG-DLDEIIEALIV 347
>gi|194468250|ref|ZP_03074236.1| peptide chain release factor 1 [Lactobacillus reuteri 100-23]
gi|194453103|gb|EDX42001.1| peptide chain release factor 1 [Lactobacillus reuteri 100-23]
Length = 362
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 239/343 (69%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ ++ + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKFSKEEGSLRETVEKYNQYKKVTQTISDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E ++D D+ + EEL A +E+ +L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 LLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L +++Y+ + + + + R + IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQQEQSAYDQKRKDAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M G +LD I+AL++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAG-DLDEIIEALIV 349
>gi|148543687|ref|YP_001271057.1| peptide chain release factor 1 [Lactobacillus reuteri DSM 20016]
gi|227363334|ref|ZP_03847463.1| peptide chain release factor 1 [Lactobacillus reuteri MM2-3]
gi|227544508|ref|ZP_03974557.1| peptide chain release factor 1 [Lactobacillus reuteri CF48-3A]
gi|325682058|ref|ZP_08161576.1| peptide chain release factor RF1 [Lactobacillus reuteri MM4-1A]
gi|338204026|ref|YP_004650171.1| peptide chain release factor RF1 [Lactobacillus reuteri SD2112]
gi|148530721|gb|ABQ82720.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus
reuteri DSM 20016]
gi|227071641|gb|EEI09935.1| peptide chain release factor 1 [Lactobacillus reuteri MM2-3]
gi|227185531|gb|EEI65602.1| peptide chain release factor 1 [Lactobacillus reuteri CF48-3A]
gi|324978702|gb|EGC15651.1| peptide chain release factor RF1 [Lactobacillus reuteri MM4-1A]
gi|336449266|gb|AEI57881.1| peptide chain release factor RF1 [Lactobacillus reuteri SD2112]
Length = 362
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 239/343 (69%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ ++ + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNQYKKVTQTISDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E ++D D+ + EEL A +E+ +L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 LLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L +++Y+ + + + + R + IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQQEQSAYDQKRKDAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M G +LD I+AL++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAG-DLDEIIEALIV 349
>gi|348027434|ref|YP_004767239.1| peptide chain release factor 1 [Megasphaera elsdenii DSM 20460]
gi|341823488|emb|CCC74412.1| peptide chain release factor 1 [Megasphaera elsdenii DSM 20460]
Length = 362
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 156/342 (45%), Positives = 229/342 (66%), Gaps = 4/342 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
+V A+E + LE ++ P A E+ K KE L + + IDG K
Sbjct: 7 KVQAVENKFMDLEQQISDPSVIARQDEWQKLTKEHASLMPIVETFRKYEDITSTIDGDKE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
+I + D D++ MA EE+ E+ L+ L +LPKD D+++ I+E+RAG GG+E
Sbjct: 67 IIDDPDSDNDLIAMAKEEMNGLTKEQADLEDQLHVLMLPKDPRDDKNVIMEIRAGAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKK-GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
A+LFA D+F+MY +Y +K+ GWK ++ +L G+KE ++ G GVYGKLK+ESG+H
Sbjct: 127 AALFAGDLFRMYMKYIEKQPGWKTSIISSNAPELGGFKEVVFSVEGSGVYGKLKYESGVH 186
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TE GR+HTS +VA+LP+A++V++ L +D+R+D +R+ G+GGQH N T+SA
Sbjct: 187 RVQRVPVTEAGGRIHTSTATVAVLPEAEDVEIDLNMDDVRVDYFRASGAGGQHVNKTSSA 246
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+THIPTGM + QDERSQ N+AKAL+VL A+L + + + ++ R Q+G+GDR
Sbjct: 247 VRMTHIPTGMVVECQDERSQLENRAKALRVLKARLLDQAQQKADAELTEERRSQVGTGDR 306
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
SERIRTYNFPQGRVTDHR+ +T + + +++ G ++D FI AL
Sbjct: 307 SERIRTYNFPQGRVTDHRINLTLYKLDNILNG-DIDEFIQAL 347
>gi|314935933|ref|ZP_07843283.1| peptide chain release factor 1 [Staphylococcus hominis subsp.
hominis C80]
gi|313655939|gb|EFS19681.1| peptide chain release factor 1 [Staphylococcus hominis subsp.
hominis C80]
Length = 358
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 235/351 (66%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ PE P + K +KE L+ ++ + + ++K++E+ + ++ E
Sbjct: 8 VEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAEIDEMLTE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIEMLKEEASGLKGELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ + +K E+V ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ I+ E+SQ N+ KALKVL A+LY+M+ + R +G+GDRSER+R
Sbjct: 247 IPTGI-IATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRSERVR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG LD IDAL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLDQIMEG-KLDEIIDALTLSEQTEKLKELNN 355
>gi|343127515|ref|YP_004777446.1| peptide chain release factor 1 [Borrelia bissettii DN127]
gi|342222203|gb|AEL18381.1| peptide chain release factor 1 [Borrelia bissettii DN127]
Length = 357
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/291 (49%), Positives = 210/291 (72%), Gaps = 1/291 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEEEDQQEMKELIKQELIDLDKKKEDLEQQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS+KK WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE SGR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESSGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L+++ + + S
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDPLLDPLMIELQEQTLKS 354
>gi|148378145|ref|YP_001252686.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC
3502]
gi|153932228|ref|YP_001382546.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC
19397]
gi|153936703|ref|YP_001386098.1| peptide chain release factor 1 [Clostridium botulinum A str. Hall]
gi|166223548|sp|A7FQG2.1|RF1_CLOB1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223549|sp|A5HY35.1|RF1_CLOBH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148287629|emb|CAL81694.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC
3502]
gi|152928272|gb|ABS33772.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC
19397]
gi|152932617|gb|ABS38116.1| peptide chain release factor 1 [Clostridium botulinum A str. Hall]
Length = 358
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/360 (44%), Positives = 244/360 (67%), Gaps = 10/360 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + A+ G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETISLNATDIGGFKEVTVAVKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDE+SQ NK KA+KVL A+L+E + S ++ R Q+
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
G+GDRSERIRTYN+PQGR+TDHR+G+T + + ++G ++D I+AL+ + + + + G
Sbjct: 297 GTGDRSERIRTYNYPQGRITDHRIGLTLYKLETFLDG-DIDEAIEALVTEDQAEKMKDLG 355
>gi|333899125|ref|YP_004472998.1| peptide chain release factor 1 [Pseudomonas fulva 12-X]
gi|333114390|gb|AEF20904.1| Peptide chain release factor 1 [Pseudomonas fulva 12-X]
Length = 360
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 222/328 (67%), Gaps = 4/328 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE ++ + E R Q +++G +L+ + D D+ +MA EE+ A
Sbjct: 34 QFRAYSKEYAEIEPVIAAFREFRKVQGDLEGALALLKDS--DPDLREMAEEEVDTARARL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L + LLPKD D R+ LEVRAGTGG+EA++FA D+F+MY RY++K+GW+ EV+
Sbjct: 92 AELEDSLQRMLLPKDPNDGRNVFLEVRAGTGGDEAAIFAGDLFRMYSRYAEKQGWRVEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G V+GKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SANEGEHGGFKEVIARVEGDNVFGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DE + + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH N+AK
Sbjct: 212 DEQMAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQHKNRAK 271
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ L AKL + + + H S R +GSGDRSERIRTYNFPQGRVTDHR+ +T +++
Sbjct: 272 AMAWLAAKLKDQQDAAAHKEISDTRKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYSL 331
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASF 418
+++ G +D I+ LL + + D +A+
Sbjct: 332 GEVIAG-GVDAVIEPLLAEYQADQLAAL 358
>gi|259503694|ref|ZP_05746596.1| peptide chain release factor RF1 [Lactobacillus antri DSM 16041]
gi|259168326|gb|EEW52821.1| peptide chain release factor RF1 [Lactobacillus antri DSM 16041]
Length = 362
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 238/343 (69%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E ++D D+ M +EL + + +++L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLRE-TDDPDLAAMTKDELAESKERQEQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY Y++K+GWK EVV +E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLHYAEKQGWKVEVVDKSETEVGGFKEIALMITGTNVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L +++Y+ + + + K R IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQNAYDKKRKNAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M GE LD I+AL++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMSGE-LDEIIEALIV 349
>gi|85705322|ref|ZP_01036421.1| peptide chain release factor 1 [Roseovarius sp. 217]
gi|85670195|gb|EAQ25057.1| peptide chain release factor 1 [Roseovarius sp. 217]
Length = 426
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 154/316 (48%), Positives = 226/316 (71%), Gaps = 6/316 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+ ++ +E +LR + I R +I+G ++++ D +M D+A +EL +
Sbjct: 104 GDIARLGREYSELRPLVEEIRAYRQILADIEGARAMLG----DPEMRDLARDELEVLEAR 159
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
+++ L +LLP+D+A+ R ILE+R GTGGEEA+LFA D+ +MY+RY++ +GW F+V
Sbjct: 160 LPGMEAALQLALLPRDEANARPAILEIRPGTGGEEAALFAADLMRMYQRYAEARGWVFDV 219
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ +S+L G +E I G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 220 IEEQQSELGGIRELVVHIKGEGVFARLKFESGVHRVQRVPETESGGRIHTSAATVAVLPE 279
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A++VDV++ DLRIDT RS G+GGQH NTT+SAVR+THIP+G+ ++ E+SQH N+
Sbjct: 280 AEDVDVQINPNDLRIDTMRSSGAGGQHVNTTDSAVRITHIPSGIVVT-SSEKSQHRNREI 338
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A++VL ++L++MERSR+ RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 339 AMQVLKSRLFDMERSRVDSERSANRAAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYKL 398
Query: 391 SDMMEGENLDIFIDAL 406
+M G +LD IDAL
Sbjct: 399 EQVM-GGDLDEVIDAL 413
>gi|282857117|ref|ZP_06266363.1| peptide chain release factor 1 [Pyramidobacter piscolens W5455]
gi|282585052|gb|EFB90374.1| peptide chain release factor 1 [Pyramidobacter piscolens W5455]
Length = 358
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/259 (55%), Positives = 198/259 (76%), Gaps = 1/259 (0%)
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+++ L +LLPKD DE+D I+E+RAGTGG+EASLFA D+F+MY RY++++GWK E+V
Sbjct: 91 KIEEQLRVALLPKDPNDEKDVIMEIRAGTGGDEASLFAADLFRMYSRYAEREGWKLEIVD 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E+++ GYKE I G GVY +LK+ESG+HRVQRVP TE GR+HTSA +V ++P AD
Sbjct: 151 ENETEVGGYKEIVLQIHGRGVYSQLKYESGVHRVQRVPATEAGGRIHTSAATVVVMPVAD 210
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
++D+ +R EDL+IDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ QDERSQ N+AKAL
Sbjct: 211 DIDIEIRPEDLKIDTYRSSGAGGQHVNMTDSAVRITHLPTGLVVTCQDERSQIKNRAKAL 270
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL +LY+ E + + S R IGSGDRSERIRTYN+PQ RVTDHR+G+T + +
Sbjct: 271 QVLKTRLYDAEVEKQRSAESAERKGMIGSGDRSERIRTYNYPQNRVTDHRIGLTLYKLEY 330
Query: 393 MMEGENLDIFIDALLLQQE 411
MM+G +L I AL++ ++
Sbjct: 331 MMDG-DLYEMIKALVMAEQ 348
>gi|347758186|ref|YP_004865748.1| peptide chain release factor 1 [Micavibrio aeruginosavorus ARL-13]
gi|347590704|gb|AEP09746.1| peptide chain release factor 1 [Micavibrio aeruginosavorus ARL-13]
Length = 353
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 239/354 (67%), Gaps = 4/354 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
++ ++ I+ R + L L+ + S Y K ++E +L + I KE L+
Sbjct: 3 LKDKMGPIKARHSELAALMGEGNLSGEAYVKLSREYAELGPVVEAIDAYDAALKEKADLE 62
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
+++ DKDM +MA EEL D L+ + +L+PKD+AD R+ ILE+RAGTGG+
Sbjct: 63 AML----SDKDMAEMAQEELYALKDRLPGLEEQVKLALIPKDEADSRNAILEIRAGTGGD 118
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY Y+ +GW+FEV ++E+DL GYKE + G V+ +LK+ESG H
Sbjct: 119 EAALFAADLFAMYRGYAATRGWRFEVAEMSENDLGGYKEIIVEVQGSDVFSRLKYESGGH 178
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQR+P+TE GR+HTSA +VA++P+A++VD+ + +DLRID YR+ G+GGQH N T SA
Sbjct: 179 RVQRIPVTEAGGRIHTSAATVAVMPEAEDVDIHIDEKDLRIDVYRAQGAGGQHVNKTESA 238
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+THIPTG + Q+ +SQH N+ A+K+L +KLYE + + RS R Q+GSGDR
Sbjct: 239 VRITHIPTGTVAACQEGKSQHKNRDTAMKMLRSKLYEAQWRKQAEERSANRKSQVGSGDR 298
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SERIRTYNFPQGRVTDHR+ +T +A+ D++ G++LD FIDAL+ ++ + +A
Sbjct: 299 SERIRTYNFPQGRVTDHRINMTLYALDDVLSGKDLDKFIDALISEENAEKLAEL 352
>gi|168177471|ref|ZP_02612135.1| peptide chain release factor 1 [Clostridium botulinum NCTC 2916]
gi|226947362|ref|YP_002802453.1| peptide chain release factor 1 [Clostridium botulinum A2 str.
Kyoto]
gi|254790873|sp|C1FQ97.1|RF1_CLOBJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|182670538|gb|EDT82512.1| peptide chain release factor 1 [Clostridium botulinum NCTC 2916]
gi|226843349|gb|ACO86015.1| peptide chain release factor 1 [Clostridium botulinum A2 str.
Kyoto]
Length = 358
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 244/360 (67%), Gaps = 10/360 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKELREMAQEEIKELTLRLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + AI G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDE+SQ NK KA+KVL A+L+E + S ++ R Q+
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
G+GDRSERIRTYN+PQGR+TDHR+G+T + + ++G ++D I+AL+ + + + + G
Sbjct: 297 GTGDRSERIRTYNYPQGRITDHRIGLTLYKLETFLDG-DIDEVIEALVTEDQAEKMKDLG 355
>gi|294669176|ref|ZP_06734256.1| peptide chain release factor 1 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308808|gb|EFE50051.1| peptide chain release factor 1 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 358
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/341 (46%), Positives = 227/341 (66%), Gaps = 8/341 (2%)
Query: 82 LVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PEA+ Y K +E ++ + + Q ++ + ++ D +M D
Sbjct: 22 LLGSPEATSDMGNYRKLTREHAEITPVVETFHQYMQAQNDMAEAQEML----SDPEMKDF 77
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
ATEE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY R
Sbjct: 78 ATEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYSR 137
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+H
Sbjct: 138 YAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRIH 197
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 198 TSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVEC 257
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGRV
Sbjct: 258 QDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRV 317
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
TDHR+ +T H + +M+G +++ +AL+ + + + +A+ G
Sbjct: 318 TDHRINLTLHKLDFVMDG-DMEEITNALIAEHQAELLAAMG 357
>gi|442803675|ref|YP_007371824.1| peptide chain release factor 1 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739525|gb|AGC67214.1| peptide chain release factor 1 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 356
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 160/356 (44%), Positives = 244/356 (68%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE + L + P + P Y+K KE +L + + E + +K +
Sbjct: 1 MFDKLEAIENKYEELNIKIADPAVISDPELYAKLMKEHSELSEIVEKYREYKKYKKNLQD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ E DK++ DM E+ A +R L ++PKD DE++ I+E+R G G
Sbjct: 61 AKKMLEE-KPDKELRDMIMAEIEEAEAGIERTTRELKILMMPKDPNDEKNVIIEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LF+ D+++M+ RY+++K W +E++ E++L G+KE +I G G Y +LK+ESG
Sbjct: 120 GEEAALFSADLYRMFTRYAERKNWTYEIIDANETELGGFKEIIFSIEGKGAYSRLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTT 301
+HRVQRVP TE SGR+HTS V+VA+LP+ D+V +V++ D+R+DT+R+ G+GGQH N T
Sbjct: 180 VHRVQRVPTTESSGRIHTSTVTVAVLPEVDDVPEVQINPSDIRVDTFRASGAGGQHVNKT 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SA+R+THIPTG+ ++ QDERSQH N+ KA++VL AKLYE+ +S+I+ ++ R Q+G+
Sbjct: 240 SSAIRITHIPTGIVVTCQDERSQHRNREKAMRVLKAKLYELAQSKINNEIAENRRMQVGT 299
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
GDRSERIRTYNFPQGRVTDHR+G+T + + +++G +LD IDAL+ + + IAS
Sbjct: 300 GDRSERIRTYNFPQGRVTDHRIGLTLYKLDQILDG-DLDELIDALITEDQARKIAS 354
>gi|260767753|ref|ZP_05876688.1| peptide chain release factor 1 [Vibrio furnissii CIP 102972]
gi|375130242|ref|YP_004992342.1| peptide chain release factor 1 [Vibrio furnissii NCTC 11218]
gi|260617262|gb|EEX42446.1| peptide chain release factor 1 [Vibrio furnissii CIP 102972]
gi|315179416|gb|ADT86330.1| peptide chain release factor 1 [Vibrio furnissii NCTC 11218]
Length = 362
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 152/324 (46%), Positives = 223/324 (68%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + H + Q ++ + + E +D +M +MA +E+ +A E +RL
Sbjct: 39 SKEYSQLEEITHCFQAYQQAQDDLSAAEEMAKE--DDAEMREMAQDEIKVAKAEIERLSD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY R+++K+GW+ EV+ E+
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSRFAEKRGWRIEVMSSNEA 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG LKFESG HRVQRVP TE GRVHTSA +VA++ + E ++
Sbjct: 157 EHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQGRVHTSACTVAVMAEVPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+R DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKA+ VL
Sbjct: 217 PEIRTADLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E + + S R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + +S++ME
Sbjct: 277 AARIAKAEEEKRAAAISDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLSEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +L +D ++ + + D +A+
Sbjct: 337 G-DLQSLVDPVIQEHQADQLAALA 359
>gi|90422036|ref|YP_530406.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisB18]
gi|119361591|sp|Q21BZ9.1|RF1_RHOPB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|90104050|gb|ABD86087.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris BisB18]
Length = 361
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 142/260 (54%), Positives = 196/260 (75%)
Query: 161 SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG 220
+LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYE+++ +GW EVV +E + G
Sbjct: 100 ALLPKDAMDDRNVMLEIRAGTGGDEASLFAGDLFRMYEKFAVLQGWSVEVVSASEGTMGG 159
Query: 221 YKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRN 280
YKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +EVDV ++
Sbjct: 160 YKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKP 219
Query: 281 EDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLY 340
+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH N+A A+ +L +++Y
Sbjct: 220 DDLRIETMRAQGAGGQHVNKTESAIRITHIPTGLQVMMQDSRSQHKNRASAMNILRSRIY 279
Query: 341 EMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLD 400
+ E+ RI RS R E++GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++ GE L
Sbjct: 280 DAEQQRIDSVRSAERKEKVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALG 339
Query: 401 IFIDALLLQQEMDAIASFGS 420
IDAL + + +A+ G+
Sbjct: 340 ELIDALTTEHQAAQLAAQGN 359
>gi|315497942|ref|YP_004086746.1| peptide chain release factor 1 [Asticcacaulis excentricus CB 48]
gi|315415954|gb|ADU12595.1| peptide chain release factor 1 [Asticcacaulis excentricus CB 48]
Length = 358
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 224/314 (71%), Gaps = 7/314 (2%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + D++ + + R E++ L +L D ++ +A EE +
Sbjct: 36 SKEHAELKPVVDAVTALLKARASGPELEELIAL-----NDPELSPLAQEEFQELKERLPE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L PKD + ILEVRAGTGG+EA+LFA D+F+MY RY+ +GW+ E+ +
Sbjct: 91 LERGVALLLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYSRYAASQGWRVEIDSI 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E D GYKE A+++G GV+GKLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A++
Sbjct: 151 SEGDAGGYKEIIASVTGDGVFGKLKFESGVHRVQRVPATEAGGRIHTSAATVAVLPEAED 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V++ ++++D+RIDTYR+ GSGGQH N T+SAVR+TH+PTG+ ++ E+SQHMN+ A++
Sbjct: 211 VEIDIQDKDIRIDTYRASGSGGQHVNKTDSAVRITHLPTGI-VATSSEKSQHMNRQIAMR 269
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
L A+LY+++R + +RS R Q+GSGDRSERIRTYN+PQGRV+DHR+ +T + +S
Sbjct: 270 NLKARLYDIQRQALDAARSDARKSQVGSGDRSERIRTYNYPQGRVSDHRINLTLYNLSQF 329
Query: 394 MEGENLDIFIDALL 407
MEGE +D I+AL+
Sbjct: 330 MEGE-MDQMINALI 342
>gi|242241525|ref|ZP_04795970.1| peptide chain release factor 1 [Staphylococcus epidermidis W23144]
gi|416128250|ref|ZP_11597255.1| peptide chain release factor 1 [Staphylococcus epidermidis FRI909]
gi|418328423|ref|ZP_12939536.1| peptide chain release factor 1 [Staphylococcus epidermidis
14.1.R1.SE]
gi|418614626|ref|ZP_13177589.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU118]
gi|418633631|ref|ZP_13196039.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU129]
gi|420174286|ref|ZP_14680739.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM061]
gi|420178547|ref|ZP_14684877.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM057]
gi|420181341|ref|ZP_14687544.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM053]
gi|420191022|ref|ZP_14696959.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM037]
gi|420193551|ref|ZP_14699402.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM023]
gi|420204945|ref|ZP_14710483.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM015]
gi|242235068|gb|EES37379.1| peptide chain release factor 1 [Staphylococcus epidermidis W23144]
gi|319399600|gb|EFV87855.1| peptide chain release factor 1 [Staphylococcus epidermidis FRI909]
gi|365232022|gb|EHM73037.1| peptide chain release factor 1 [Staphylococcus epidermidis
14.1.R1.SE]
gi|374819516|gb|EHR83638.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU118]
gi|374838969|gb|EHS02502.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU129]
gi|394245220|gb|EJD90537.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM061]
gi|394246270|gb|EJD91531.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM057]
gi|394246689|gb|EJD91943.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM053]
gi|394258120|gb|EJE03012.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM037]
gi|394259818|gb|EJE04649.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM023]
gi|394271666|gb|EJE16155.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM015]
Length = 358
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 237/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T ++ +MEG +LD ++AL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLNQIMEG-HLDEIVEALTLSEQTEKLKELNN 355
>gi|217967194|ref|YP_002352700.1| peptide chain release factor 1 [Dictyoglomus turgidum DSM 6724]
gi|226739103|sp|B8E003.1|RF1_DICTD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|217336293|gb|ACK42086.1| peptide chain release factor 1 [Dictyoglomus turgidum DSM 6724]
Length = 367
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 161/357 (45%), Positives = 241/357 (67%), Gaps = 4/357 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQK 118
L K++ ++ IE+R +E L+ + + + +Y KE K+ + + E + K
Sbjct: 2 LQKLVIDKLEEIEKRFEEIEGLLAKEDVISDFNKYQSLLKERAKIEEIVDKFREYKRLLK 61
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E + L+ ++ E +D+D+ +A EL ++ ++++ L LLPKD DE++ I+E+R
Sbjct: 62 EKEDLEEMVKE-EQDEDLRSLAETELEDIQEKLEKVEFELKALLLPKDPNDEKNIIMEIR 120
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGGEEA+LFA D+F+MY Y+QKKGWK E+V + L G+KE + G G Y +LK
Sbjct: 121 AGTGGEEAALFAADLFRMYLGYAQKKGWKVEIVSSNPTGLGGFKEIIFIVEGKGAYSRLK 180
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP+TE SGR+HTS +VA+LP+ +E++V + +DLRI+T+RSGG+GGQH
Sbjct: 181 FESGVHRVQRVPITESSGRIHTSTATVAVLPEMEEIEVEIDPKDLRIETFRSGGAGGQHV 240
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
N T S VR+THIP+G+ + QDERSQH N+ KA+KVL A+LYE + + R +Q
Sbjct: 241 NKTESGVRITHIPSGIVVQCQDERSQHQNREKAMKVLRARLYEYYQREKENEIASQRRQQ 300
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+G+G+RSE+IRTYNFPQ RVTDHR+ + + +++ GE LD FID L+L ++ + I
Sbjct: 301 VGTGERSEKIRTYNFPQRRVTDHRINYSSFQLEEVLSGE-LDEFIDRLILAEKEEQI 356
>gi|424828081|ref|ZP_18252822.1| peptide chain release factor 1 [Clostridium sporogenes PA 3679]
gi|365979564|gb|EHN15617.1| peptide chain release factor 1 [Clostridium sporogenes PA 3679]
Length = 358
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 158/360 (43%), Positives = 245/360 (68%), Gaps = 10/360 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE +L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHAELEVIVNTYREYKKTQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLREES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GG+EA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + A+ G G Y +LK+
Sbjct: 117 GAGGDEAALFAANLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAVKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDE+SQ NK KA+KVL A+L+E + S ++ R Q+
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
G+GDRSERIRTYN+PQGR+TDHR+G+T + + ++G ++D I+AL+ + + + + G
Sbjct: 297 GTGDRSERIRTYNYPQGRITDHRIGLTLYKLETFLDG-DIDEVIEALVTEDQAEKMKDLG 355
>gi|163783081|ref|ZP_02178076.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881761|gb|EDP75270.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
Length = 361
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 237/353 (67%), Gaps = 9/353 (2%)
Query: 56 MLSNDLIKIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISEL 113
ML +LI +E+ +R +E +++PE Y + ++E ++L + E
Sbjct: 1 MLKKELIDKLEKLTEKYKR----IEEELSKPEVIQDVKRYRELSREHKELAELYETYQEY 56
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
+ Q+E++ K L+ S +K++ ++A EE+ L+ L L+PKD D ++
Sbjct: 57 KRLQRELNEAKELL--KSPEKELKELAQEEIEDIQSRIPELEEKLKLLLVPKDPNDSKNV 114
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
ILE+RAGTGGEEA+LF D+ +MY++Y++ KGWKF ++ ++ L GYKE A I G G
Sbjct: 115 ILEIRAGTGGEEAALFVADLLRMYQKYAEDKGWKFSILNANKTGLGGYKEVIALIEGEGA 174
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGS 293
Y +LK+ESG+HRVQR+P+TE GR+HTS +VA+LP+ADE DV + +DL+I+T+R+ G+
Sbjct: 175 YSRLKYESGVHRVQRIPVTESGGRIHTSTATVAVLPEADEADVEINPQDLKIETFRASGA 234
Query: 294 GGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSK 353
GGQ+ NTT +AVR+TH PTG+ +S QDERSQ NK KALK+L AKL + + ++
Sbjct: 235 GGQYVNTTETAVRITHTPTGIVVSCQDERSQFQNKQKALKILYAKLKDFYERKKREEIAR 294
Query: 354 LRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
R EQ+G+G+RSE+IRTYNFPQ RVTDHRV +T + ++D++EG LD FIDAL
Sbjct: 295 ERKEQVGTGERSEKIRTYNFPQNRVTDHRVNLTLYKLNDVLEG-KLDEFIDAL 346
>gi|379796442|ref|YP_005326443.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873435|emb|CCE59774.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 358
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 237/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + ++K++E+ ++ L+ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKSKKEELTDIEELLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+EDK+ ++M EE E L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TEDKEEIEMLKEESSGIKAELPNLEEELKILLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESEGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG +L+ IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTDKLKELNN 355
>gi|26987469|ref|NP_742894.1| peptide chain release factor 1 [Pseudomonas putida KT2440]
gi|32171521|sp|Q88PW5.1|RF1_PSEPK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|24982133|gb|AAN66358.1|AE016264_2 peptide chain release factor 1 [Pseudomonas putida KT2440]
Length = 360
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 151/309 (48%), Positives = 219/309 (70%), Gaps = 4/309 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D D+ +MA EE+ A ++ L++ L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDLREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 NVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S +
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA 291
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
+ R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G +D I+ LL +
Sbjct: 292 LASERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSG-GVDAVIEPLLAEY 350
Query: 411 EMDAIASFG 419
+ D +A+ G
Sbjct: 351 QADQLAALG 359
>gi|227529623|ref|ZP_03959672.1| peptide chain release factor 1 [Lactobacillus vaginalis ATCC 49540]
gi|227350413|gb|EEJ40704.1| peptide chain release factor 1 [Lactobacillus vaginalis ATCC 49540]
Length = 362
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 238/343 (69%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKKVTQTISDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E S+D D+ ++ +EL A D++ +L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 LLRE-SDDPDLTELTKDELSSAKDQQAKLEKELEILLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY Y++ +GWK EVV +E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLHYAENQGWKVEVVDKSETEVGGFKEIALMITGDKVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L +++Y+ + + + R + IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQSAYDAKRKDAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M G +LD I+AL++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMSG-DLDEIIEALIV 349
>gi|66810982|ref|XP_639198.1| peptide chain release factor 1 [Dictyostelium discoideum AX4]
gi|60467811|gb|EAL65826.1| peptide chain release factor 1 [Dictyostelium discoideum AX4]
Length = 430
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 238/344 (69%), Gaps = 4/344 (1%)
Query: 68 RVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
R+ + ++S L N+++ +E K +KEL++ + + +L K KE+ L+++
Sbjct: 78 RLNLMGKKSKELRNMIDSNMGLGQSEIKKISKELQETAEPLGYFGDLIEKLKELKELQTM 137
Query: 127 IYECSEDKDMLDMATEELC-LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
+ E + D+D M ++ L +E + L+ LL SLLP D D ILE+RAGTGG E
Sbjct: 138 LVEET-DEDGKQMIKSDINKLKQEEIEPLEKQLLFSLLPGSKDDAGDAILEIRAGTGGSE 196
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A LF DV++MY Y +KGW FE + ++ +++ GY++ + ++SG GV+G LK+ESG+HR
Sbjct: 197 AQLFTQDVYEMYRSYCLQKGWTFEPLELSVTEVGGYRDVTVSVSGKGVFGFLKYESGVHR 256
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVPLTE GR+HTS ++VAILP+ +VD+++ + DL++D YRS G+GGQ NTT+SAV
Sbjct: 257 VQRVPLTETQGRIHTSTITVAILPEPKDVDIQIHDRDLKVDIYRSSGNGGQSVNTTDSAV 316
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+T+++QDERSQH N++KA+K+L A++YE ER R+ R R+ QIGS RS
Sbjct: 317 RITHLPTGITVAMQDERSQHQNRSKAMKILKARIYERERIRLQNERVSERNAQIGSALRS 376
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
ERIRTYN+PQ R+TDHRV I + ++ M + LD FID +L++
Sbjct: 377 ERIRTYNYPQDRITDHRVSINGN-LNSCMNSDGLDSFIDEILVE 419
>gi|383753168|ref|YP_005432071.1| putative peptide chain release factor 1 [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381365220|dbj|BAL82048.1| putative peptide chain release factor 1 [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 355
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 165/345 (47%), Positives = 232/345 (67%), Gaps = 4/345 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E + LE+L++ P+ A + + K +KE L + E + K I+
Sbjct: 1 MLDKLQAVEDKFLELESLISDPDVIADMSRWQKYSKEHASLAPIVEKFREYKDVTKGIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K++ +E S D +M EEL +++ L + L LLPKD D+++ I+E+R G G
Sbjct: 61 AKAM-FEESLDDEMRKFVEEELAELKAQKEVLDAELPILLLPKDPNDDKNVIVEIRGGVG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY +K+GWK E++ + ++L GYKE S ++G G Y KLK+ESG
Sbjct: 120 GEEAALFAGDLFRMYGRYVEKQGWKMEIIDGSPTELGGYKEISFMVTGFGAYSKLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSAV+VA+LP+A++VDV + +DL ID Y + G+GGQH N T
Sbjct: 180 THRVQRVPATESGGRIHTSAVTVAVLPEAEDVDVDIDPKDLHIDLYCASGAGGQHVNRTE 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SA+R+THIPTG+ + QDERSQ NK KA+KVL A+L + + S S R Q+GSG
Sbjct: 240 SAIRITHIPTGIVVQCQDERSQLKNKDKAMKVLRARLLDKAQQEQMASISADRRSQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
DRSERIRTYNFPQGRVTDHR+G+T H I ++ G +LD ++AL+
Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLHRIDAVLAG-DLDEILNALI 343
>gi|404399170|ref|ZP_10990754.1| peptide chain release factor 1 [Pseudomonas fuscovaginae UPB0736]
Length = 360
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 153/304 (50%), Positives = 217/304 (71%), Gaps = 4/304 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE A ++ L+S L + LLPKD D R+ LE
Sbjct: 59 QSDLEGAQALLKDS--DPDMREMAVEEAREAKEQLVELESSLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ +E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRVEILSESEGEHGGYKEVIARVEGESVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + + DLRIDTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRIDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH N T+SA+R+THIP+G+ + Q+ERSQH N+A+A+ L AKL + + S + + R
Sbjct: 237 QHVNKTDSAIRITHIPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASER 296
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+GSGDRSERIRTYNFPQGRVTDHRV +T +++ ++M G +D I+ LL + + D +
Sbjct: 297 KLLVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEIMAG-GVDAVIEPLLAEYQADQL 355
Query: 416 ASFG 419
A+ G
Sbjct: 356 AALG 359
>gi|347732302|ref|ZP_08865383.1| peptide chain release factor 1 [Desulfovibrio sp. A2]
gi|347518836|gb|EGY26000.1| peptide chain release factor 1 [Desulfovibrio sp. A2]
Length = 357
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 165/337 (48%), Positives = 230/337 (68%), Gaps = 22/337 (6%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL-CLAIDEEK 152
+KA+ +L+++ D ELR +++K++LD + E+ +A +E K
Sbjct: 35 TKAHADLKEVVDVFRRYKELRQN-------------LADNKELLDDSDPEIRSMAHEEAK 81
Query: 153 RLQSLL-------LKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
L++ + LLPKD DE++ I+E+RAGTGGEEA+LFA D+F+MY RY++ +G
Sbjct: 82 SLEAAIPEIEQELQLLLLPKDPLDEKNTIVEIRAGTGGEEAALFAADLFRMYSRYAEIRG 141
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
WK E++ ESD GYKE A I G VY +LKFESG HRVQRVP TE GR+HTSA +V
Sbjct: 142 WKVEILSANESDTGGYKEIIALIVGDKVYSRLKFESGTHRVQRVPATESQGRIHTSAATV 201
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
AILP+A+EVDV +R +D+RID +R+ G+GGQH N T SAVR+TH+P+G+ +S QDE+SQH
Sbjct: 202 AILPEAEEVDVEIRPDDIRIDVFRASGAGGQHVNKTESAVRITHMPSGIVVSCQDEKSQH 261
Query: 326 MNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGI 385
NKAKA+KVL ++L + E+ R H + R Q+GSGDRSERIRTYNFPQGRVTDHR+ +
Sbjct: 262 KNKAKAMKVLASRLLQAEQDRQHNEMAADRRSQVGSGDRSERIRTYNFPQGRVTDHRINL 321
Query: 386 THHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
T +++ +MEGE +F DAL + +A+ + Q
Sbjct: 322 TLYSLDRVMEGEAQALF-DALSTHAQTEALKAQADVQ 357
>gi|320109111|ref|YP_004184701.1| peptide chain release factor 1 [Terriglobus saanensis SP1PR4]
gi|319927632|gb|ADV84707.1| peptide chain release factor 1 [Terriglobus saanensis SP1PR4]
Length = 355
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 160/343 (46%), Positives = 231/343 (67%), Gaps = 3/343 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
M R+ +E R LE+ + QPE + + K ++ RD LI + R ++ ++G+
Sbjct: 1 MFDRLQQMEVRYQELESELAQPEIV-QDQPRYQKAMKAHRDLEILIEKFREFKEVMNGIA 59
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
+ D DM +MA EEL + + ++ L LLPKD D ++ +LE+RAGTGG+
Sbjct: 60 D-AHTMLADPDMKEMAEEELSTLMPRKTEIEEELKIMLLPKDPNDSKNVVLEIRAGTGGD 118
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA ++F+MY R++++ WK EV+ E + G KE +A G VY +LK+ESG+H
Sbjct: 119 EAALFAEEMFRMYLRFAEQHRWKVEVLSEREGAVGGMKEVTAIFEGDQVYSQLKYESGVH 178
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GRVHTSA++VA+LP+A+EVDV++ +DLRIDT+ S G GGQ NTT SA
Sbjct: 179 RVQRVPATETQGRVHTSAITVAVLPEAEEVDVKIEAKDLRIDTFCSSGPGGQSVNTTYSA 238
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
+R+TH+PT +S QDE+SQ N+ KA++VL ++LYE+E R+H ++ R Q+GSGDR
Sbjct: 239 IRITHLPTNTVVSCQDEKSQIKNREKAMRVLRSRLYEVEMERVHQLQATARKAQVGSGDR 298
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SE+IRTYNFPQ R+TDHR+G+T H + +MEG L +DAL+
Sbjct: 299 SEKIRTYNFPQNRLTDHRIGLTLHQLEYVMEG-KLQPVVDALI 340
>gi|237756512|ref|ZP_04585042.1| peptide chain release factor 1 [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691328|gb|EEP60406.1| peptide chain release factor 1 [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 360
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 160/325 (49%), Positives = 236/325 (72%), Gaps = 10/325 (3%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
KE ++L + ++L +E + ++I+ +K L+ + D D+ ++A EEL + L+
Sbjct: 40 KEHKELSEILNLYNEYKKVNRQIEEVKQLL-NSTPDDDLRELAEEELESLKKHREDLEKK 98
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
+ +LLPKD DER+ ILE+R G GG+EASLFA ++F+MY+RY+++ GWK E++ + ++
Sbjct: 99 IEIALLPKDPNDERNVILEIRQGAGGDEASLFAAELFRMYQRYAERHGWKTEILSLHPTE 158
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
G KE A I G G Y +LK+ESG+HRVQRVP TE SGR+HTS V+VA+LP+A+EVD+
Sbjct: 159 KGGIKEVIALIKGKGAYSRLKYESGVHRVQRVPETESSGRIHTSTVTVAVLPEAEEVDIE 218
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCA 337
++ E+LRI+T R+GG+GGQH NTT+SAVR+THIPTGM ++ QDERSQ NK KA+++L A
Sbjct: 219 IKPEELRIETMRAGGAGGQHVNTTDSAVRITHIPTGMVVTCQDERSQLQNKMKAMQILRA 278
Query: 338 KL---YE-MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L YE +E+ +I +K R EQ+G+G+RSE+IRTYNFPQ RVTDHRV T + I+D+
Sbjct: 279 RLKDYYERLEKEKI----AKERKEQVGTGERSEKIRTYNFPQNRVTDHRVNYTSYRINDI 334
Query: 394 MEGENLDIFIDALLLQQEMDAIASF 418
M+G +LD ID L+ ++ + +A
Sbjct: 335 MDG-DLDEIIDVLIAKENEEKLAKL 358
>gi|386010393|ref|YP_005928670.1| protein PrfA [Pseudomonas putida BIRD-1]
gi|395447154|ref|YP_006387407.1| PrfA [Pseudomonas putida ND6]
gi|397693751|ref|YP_006531631.1| peptide chain release factor 1 [Pseudomonas putida DOT-T1E]
gi|421524618|ref|ZP_15971239.1| peptide chain release factor 1 [Pseudomonas putida LS46]
gi|313497099|gb|ADR58465.1| PrfA [Pseudomonas putida BIRD-1]
gi|388561151|gb|AFK70292.1| PrfA [Pseudomonas putida ND6]
gi|397330481|gb|AFO46840.1| Peptide chain release factor 1 [Pseudomonas putida DOT-T1E]
gi|402751081|gb|EJX11594.1| peptide chain release factor 1 [Pseudomonas putida LS46]
Length = 360
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 151/309 (48%), Positives = 219/309 (70%), Gaps = 4/309 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D D+ +MA EE+ A ++ L++ L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDLREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 NVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S +
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA 291
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
+ R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G +D I+ LL +
Sbjct: 292 IASERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSG-GVDAVIEPLLAEY 350
Query: 411 EMDAIASFG 419
+ D +A+ G
Sbjct: 351 QADQLAALG 359
>gi|169333846|ref|ZP_02861039.1| hypothetical protein ANASTE_00232 [Anaerofustis stercorihominis DSM
17244]
gi|169259411|gb|EDS73377.1| peptide chain release factor 1 [Anaerofustis stercorihominis DSM
17244]
Length = 355
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 145/281 (51%), Positives = 212/281 (75%), Gaps = 1/281 (0%)
Query: 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
S+D D +M E++ ++++ L+ + L+PKD D+++ I+E+RAG GG+EA+LFA
Sbjct: 68 SDDDDFKEMILEDISSLNEQKEGLEQEIKILLIPKDPNDDKNVIVEIRAGVGGDEAALFA 127
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+ +MY RY+++ WK E++ E + GYKEA +I G G Y +LK+ESG HRVQR+P
Sbjct: 128 GDLLRMYTRYAERNRWKVEMLSTNEIGIGGYKEAVFSIQGKGAYSRLKYESGTHRVQRIP 187
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE SGR+HTSA++VA+LP+A++V+V + DLRID YRS G+GGQ NTT+SAVR+THI
Sbjct: 188 DTESSGRIHTSAITVAVLPEAEDVEVNIDPNDLRIDVYRSSGNGGQSVNTTDSAVRITHI 247
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
P+G+ ++ QDE+SQ NK KALK+L A+L+E+E+ + + + R QIGSGDRSERIRT
Sbjct: 248 PSGLVVACQDEKSQLKNKDKALKILKARLFEIEQRKQQEAIASNRKSQIGSGDRSERIRT 307
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
YNFPQGRVTDHRVG+T + ++D+++G ++D FID L++Q +
Sbjct: 308 YNFPQGRVTDHRVGLTLYKLNDVLDG-DIDEFIDTLIVQDQ 347
>gi|417886510|ref|ZP_12530654.1| peptide chain release factor 1 [Lactobacillus oris F0423]
gi|341592901|gb|EGS35758.1| peptide chain release factor 1 [Lactobacillus oris F0423]
Length = 362
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 237/343 (69%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E ++D D+ M +EL + D +++L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLRE-TDDPDLAAMTKDELAESKDRQEQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY Y++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLHYAEKQGWKVEVVDKNETEVGGFKEIALMITGNNVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L +++Y+ + + + + R IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQSAYDEQRKNAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M GE LD I+AL++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGE-LDEIIEALIV 349
>gi|255037851|ref|YP_003088472.1| peptide chain release factor 1 [Dyadobacter fermentans DSM 18053]
gi|254950607|gb|ACT95307.1| peptide chain release factor 1 [Dyadobacter fermentans DSM 18053]
Length = 357
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 161/340 (47%), Positives = 231/340 (67%), Gaps = 3/340 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AI+ R + + QPE + YSK +KE + L + + + QK+I G
Sbjct: 1 MIDKLEAIKERFEEVSQQIIQPEVVSDSTRYSKISKEYKDLGRIVEQYALYQKLQKDIAG 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI +D+D+ +MA EEL + + + L+ + + L+PKD D R+ ILE+R GTG
Sbjct: 61 TKELI-ATEKDEDLREMAKEELDDLLPKLEELEQNIKELLIPKDPNDSRNIILEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MY+R+ +K GW+ V+ TE GYKE + G VYGK+KFESG
Sbjct: 120 GDEAAIFAGDLFRMYQRFIEKMGWRSSVMDYTEGTNGGYKEIICKVEGEDVYGKMKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSA SVA+LP+A+EVDV++ D+RIDT++S G+GGQ NTT
Sbjct: 180 VHRVQRVPATESQGRIHTSAASVAVLPEAEEVDVQINMNDVRIDTFQSSGAGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIP+G+ +S QDERSQ NK +AL VL ++LYE+E + + + S R +GSG
Sbjct: 240 SAVRLTHIPSGLVVSCQDERSQLKNKDRALSVLRSRLYEIELKKHNDAISSQRKSMVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF 402
DRS++IRTYN+PQ R+TDHR+G T + + +MEG+ D+
Sbjct: 300 DRSDKIRTYNYPQSRITDHRIGYTVYNLPAVMEGDIADLI 339
>gi|312869581|ref|ZP_07729732.1| peptide chain release factor 1 [Lactobacillus oris PB013-T2-3]
gi|311094867|gb|EFQ53160.1| peptide chain release factor 1 [Lactobacillus oris PB013-T2-3]
Length = 362
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 236/343 (68%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVTDRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E + D D+ M +EL + D +++L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLRETN-DPDLAAMTKDELAESKDRQEQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY Y++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLHYAEKQGWKVEVVDKNETEVGGFKEIALMITGNNVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L +++Y+ + + + + R IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQSAYDEQRKNAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M GE LD I+AL++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGE-LDEIIEALIV 349
>gi|253827187|ref|ZP_04870072.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|313141390|ref|ZP_07803583.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|253510593|gb|EES89252.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|313130421|gb|EFR48038.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
Length = 356
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 211/288 (73%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+DK++ D+A EE+ A E + L+S + LLPKD DE++ LE+RAGTGG+EA +F
Sbjct: 67 DDKELGDLAKEEIKEAELENQNLESEIKILLLPKDPNDEKNIYLELRAGTGGDEAGIFVG 126
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+FK Y RY++ KGWK E++ +E+++ GYKE A I G G Y +LKFE G HRVQRVP
Sbjct: 127 DLFKAYIRYAESKGWKVEIISSSENNVGGYKEVIALIKGKGAYSRLKFEGGTHRVQRVPE 186
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA++VAI+P+ D+V+V + DLRI+ +R+GG GGQ NTT+SAVR+THIP
Sbjct: 187 TESQGRIHTSAITVAIMPEVDDVEVVINPNDLRIEVFRAGGHGGQCVNTTDSAVRITHIP 246
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+++S+QDE+SQH NK KALK+L A++YE E ++ R Q+GSGDRSERIRTY
Sbjct: 247 TGISVSMQDEKSQHKNKDKALKILKARIYEAELEAQMEQNAEARKSQVGSGDRSERIRTY 306
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
N+PQ R++DHR+G+T +++ ++M +LD I+ ++ + +A+ + G
Sbjct: 307 NYPQNRLSDHRIGLTLYSLEEIMLNGDLDQVIEPIIAYFQAEALQNSG 354
>gi|333996135|ref|YP_004528748.1| peptide chain release factor 1 [Treponema azotonutricium ZAS-9]
gi|333735566|gb|AEF81515.1| peptide chain release factor 1 [Treponema azotonutricium ZAS-9]
Length = 356
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/354 (44%), Positives = 235/354 (66%), Gaps = 20/354 (5%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
M +R+ ++ RR L L+ P+ K + R + ++E+ E++GL
Sbjct: 1 MSERLDSMLRRHGELSKLIQDPD-----IVKDQNQYRSIMKEYSQLNEIAEYNGEVEGLA 55
Query: 125 SLIYEC---SEDKDMLDMATEELCLAI-------DEEKRLQSLLLKSLLPKDDADERDCI 174
+ E ++D+ +M D E RL+ LL+ P+D DE++ I
Sbjct: 56 GQLEETRTLAQDEKDPEMKELAKEELKELELKMKDAEDRLKFLLI----PRDPLDEKNII 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+E+RAGTGGEEA+LFA D+F+MY R+++ +GWKFE++ E++L G KE +ISG VY
Sbjct: 112 MEIRAGTGGEEAALFAADLFRMYSRFAETRGWKFEIMNSNETELGGLKEIVFSISGKNVY 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
+++ESG+HRVQRVP TE SGR+HTSAV+VA+LP+ADE ++ ++ EDLRID R+GG G
Sbjct: 172 ENMRYESGVHRVQRVPATEASGRIHTSAVTVAVLPEADETEIDIKQEDLRIDVMRAGGPG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQ NTT+SAVR+THIP+G+ + QDE+SQ NKAKA++VL A++YEME ++ R++
Sbjct: 232 GQCVNTTDSAVRITHIPSGLVVHCQDEKSQIKNKAKAMRVLRARIYEMEEAKAASERAEA 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
R Q+G+GDRSERIRTYNFPQ R+TDHR+ +T + + +M+G+ ++F DAL L
Sbjct: 292 RKSQVGTGDRSERIRTYNFPQNRLTDHRINLTLYKLDLIMQGDVEELF-DALKL 344
>gi|410669049|ref|YP_006921420.1| peptide chain release factor 1 [Thermacetogenium phaeum DSM 12270]
gi|409106796|gb|AFV12921.1| peptide chain release factor 1 [Thermacetogenium phaeum DSM 12270]
Length = 363
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/316 (49%), Positives = 224/316 (70%), Gaps = 5/316 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y+K + EL D + E + +EI+ KSL+ E S D ++ D+A EL ++
Sbjct: 33 QYAKRHAELT---DIVTAFREFKKTCQEIESTKSLLEE-SADAELRDLAEAELVELRKKK 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L+ L LLP+D DE++ I+E+RAGTGGEEA+LFA D+F+MY Y++++GWK EV+
Sbjct: 89 ESLEEELKIMLLPRDPRDEKNVIVEIRAGTGGEEAALFAGDLFRMYSYYAEQQGWKVEVL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+D+ G+KE +SG VY KLK+ESG+HRVQR+P+TE +GR+HTSA +VA+LP+A
Sbjct: 149 SSHATDMGGFKEIIFQVSGDHVYSKLKYESGVHRVQRIPVTESAGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVDV + +DLRID + S G GGQ NTT SAVR+THIPTG+ ++ QDE+SQH NK KA
Sbjct: 209 EEVDVEINPQDLRIDIFCSSGPGGQSVNTTQSAVRITHIPTGIVVTCQDEKSQHKNKEKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
++VL A+L + + S LR +GSGDRSERIRTYNFPQGRVTDHR+G+T + +
Sbjct: 269 MRVLRARLLDRAQKEQQGELSSLRRSMVGSGDRSERIRTYNFPQGRVTDHRIGLTIYRLP 328
Query: 392 DMMEGENLDIFIDALL 407
++++G +L+ I AL+
Sbjct: 329 EILKG-DLEELITALI 343
>gi|167038490|ref|YP_001666068.1| peptide chain release factor 1 [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116886|ref|YP_004187045.1| peptide chain release factor 1 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|238687641|sp|B0K7G6.1|RF1_THEP3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166857324|gb|ABY95732.1| peptide chain release factor 1 [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319929977|gb|ADV80662.1| peptide chain release factor 1 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 356
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 243/356 (68%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ AE+ K KE + D + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVDLSQKISDPNIISNVAEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S D+++ +MA EEL +++++L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSNDEELKEMAEEELSQLEEKKEKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGSYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D++ID +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKIDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ ++ QDERSQ N+ +ALK+L AKLYEM ++ R Q+G+G
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAETRKSQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+RSERIRTYNFPQGRVTDHR+G+T + + ++++G +LD IDAL+L + + + +
Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDG-DLDEIIDALILNDQAEKLKNM 353
>gi|397165406|ref|ZP_10488857.1| peptide chain release factor 1 [Enterobacter radicincitans DSM
16656]
gi|396093063|gb|EJI90622.1| peptide chain release factor 1 [Enterobacter radicincitans DSM
16656]
Length = 360
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 228/323 (70%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q++I+ + ++ +D +M +MA EEL A ++ ++L+
Sbjct: 39 SREYAQLSDVSRCFTDWQKVQEDIETAQMML----DDPEMREMAQEELRDAKEKSEQLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 HLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGEGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|404448496|ref|ZP_11013489.1| peptide chain release factor 1 [Indibacter alkaliphilus LW1]
gi|403766117|gb|EJZ26992.1| peptide chain release factor 1 [Indibacter alkaliphilus LW1]
Length = 358
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 236/357 (66%), Gaps = 4/357 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A++ R + L+ QP+A +Y+K KE ++L + L E + + I
Sbjct: 1 MLDKLQALKDRFIEVGQLIIQPDAMSDMGKYTKLTKEYKELEKVVELYDEYKLVIENIKS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ + +D D +MA EL +E L+ + + L+PKD D +DCILE+R GTG
Sbjct: 61 TKEIL-DKEKDPDFREMAKVELDELKKKESVLEEQVKQQLIPKDPNDSKDCILEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MYER+ +K+GWK V+ +T GYKE + I+G VYG +K+ESG
Sbjct: 120 GDEAAIFAGDLFRMYERFCEKQGWKLTVLDLTFGSSGGYKEIISTITGADVYGMMKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA SVA+LP+ DEV+V + D+R DTY S G GGQ NTT
Sbjct: 180 VHRVQRVPTTETQGRVHTSAASVAVLPEMDEVEVDINMNDIRKDTYCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH PTG+ ++ QDE+SQ N KALKVL ++LYE+E ++ + + R +GSG
Sbjct: 240 SAVRLTHNPTGLVVTCQDEKSQIKNFEKALKVLRSRLYEIELAKHNEAVGAQRRSMVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
DRS++IRTYN+PQ RVTDHR+ T + + D+M+G N++ FI AL L + ++ + S G
Sbjct: 300 DRSDKIRTYNYPQSRVTDHRINKTVYNLPDVMDG-NIEEFISALRLAENLEKMKSSG 355
>gi|411008402|ref|ZP_11384731.1| peptide chain release factor 1 [Aeromonas aquariorum AAK1]
Length = 362
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/330 (44%), Positives = 221/330 (66%), Gaps = 4/330 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H + R ++ ++ + ++ E ED D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQQFRQAEENLEATRQMLEE--EDADLREMAQEELPLAKATFE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLP+D D+ +C LE+RAG GG+EA++FA D+F+MY RY++++GW+ +V
Sbjct: 93 EQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRVSIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A + G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNDGEHGGYKEVIAKVEGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH N+AKA
Sbjct: 213 EAEQIEINPSDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ VL A+L E R + R +GSGDRSERIRTYN+PQGR+++HR+ +T + +
Sbjct: 273 MSVLSARLQAAEDERHRAAEQSTRRNLVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLG 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFGST 421
++MEG +LD I+ ++ + + D +AS +
Sbjct: 333 EIMEG-DLDCVINPMIQEYQADQLASLAES 361
>gi|146277160|ref|YP_001167319.1| peptide chain release factor 1 [Rhodobacter sphaeroides ATCC 17025]
gi|166223594|sp|A4WRK0.1|RF1_RHOS5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145555401|gb|ABP70014.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodobacter
sphaeroides ATCC 17025]
Length = 351
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 218/301 (72%), Gaps = 13/301 (4%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL-CLAIDEEKRL--------QSLLLKS 161
+EL+ EI ++ + + +E + ML A E+ LA DE RL Q+L L +
Sbjct: 38 AELKPVVAEIAAYRTALEDLAEAEAML--ADPEMRALAEDELPRLRARIPEMEQALRL-A 94
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLP+D AD R ILE+R GTGGEEA+LFA D+ +MY+RY++ +GW+FE++ + S+L G
Sbjct: 95 LLPRDAADARPAILEIRPGTGGEEAALFAGDLLRMYQRYAEAQGWRFELLDLAPSELGGI 154
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
+EA+A I G G + +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ +
Sbjct: 155 REATARIEGEGAFARLKYESGVHRVQRVPETEAQGRIHTSAATVAVLPEAEEVDIAIPAA 214
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
D+RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY+
Sbjct: 215 DIRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQHRNREIAMQVLRARLYD 273
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
+ER R+ +RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T +A+ +M G+ ++
Sbjct: 274 LERQRLAEARSADRKAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYALPQIMAGDLAEV 333
Query: 402 F 402
Sbjct: 334 I 334
>gi|56707338|ref|YP_169234.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669808|ref|YP_666365.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis FSC198]
gi|254370015|ref|ZP_04986022.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874173|ref|ZP_05246883.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716536|ref|YP_005304872.1| Peptide chain release factor 1 [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725219|ref|YP_005317405.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis TI0902]
gi|385793928|ref|YP_005830334.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis NE061598]
gi|421754782|ref|ZP_16191747.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 80700075]
gi|61214577|sp|Q5NIA8.1|RF1_FRATT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361541|sp|Q14JR1.1|RF1_FRAT1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|54112995|gb|AAV29131.1| NT02FT0305 [synthetic construct]
gi|56603830|emb|CAG44801.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320141|emb|CAL08184.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis FSC198]
gi|151568260|gb|EDN33914.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840172|gb|EET18608.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158463|gb|ADA77854.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis NE061598]
gi|377826668|gb|AFB79916.1| Peptide chain release factor 1 [Francisella tularensis subsp.
tularensis TI0902]
gi|377828213|gb|AFB78292.1| Peptide chain release factor 1 [Francisella tularensis subsp.
tularensis TIGB03]
gi|409090449|gb|EKM90467.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 80700075]
Length = 361
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/353 (46%), Positives = 239/353 (67%), Gaps = 12/353 (3%)
Query: 77 ACLENLVNQPEASPAEYSKAN--KELRKLRD----SMHLISELRTKQKEIDGL--KSLIY 128
A L++L+ + E A S+A + K RD HL ++ +K L K Y
Sbjct: 7 AKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKKYTQALEDKQAAY 66
Query: 129 ECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
E +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGTGG+EA
Sbjct: 67 EMLNEKDAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIRAGTGGDEA 126
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
S+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFESG HRV
Sbjct: 127 SIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFESGAHRV 186
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
QRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N T+SA+
Sbjct: 187 QRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNKTDSAI 246
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +GSGDRS
Sbjct: 247 RITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVGSGDRS 306
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
ERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 307 ERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|215486443|ref|YP_002328874.1| peptide chain release factor 1 [Escherichia coli O127:H6 str.
E2348/69]
gi|312966451|ref|ZP_07780673.1| peptide chain release factor 1 [Escherichia coli 2362-75]
gi|417755208|ref|ZP_12403297.1| peptide chain release factor 1 [Escherichia coli DEC2B]
gi|418996325|ref|ZP_13543930.1| peptide chain release factor 1 [Escherichia coli DEC1A]
gi|419001558|ref|ZP_13549104.1| peptide chain release factor 1 [Escherichia coli DEC1B]
gi|419007039|ref|ZP_13554489.1| peptide chain release factor 1 [Escherichia coli DEC1C]
gi|419012997|ref|ZP_13560357.1| peptide chain release factor 1 [Escherichia coli DEC1D]
gi|419028294|ref|ZP_13575482.1| peptide chain release factor 1 [Escherichia coli DEC2C]
gi|419034149|ref|ZP_13581243.1| peptide chain release factor 1 [Escherichia coli DEC2D]
gi|419039095|ref|ZP_13586145.1| peptide chain release factor 1 [Escherichia coli DEC2E]
gi|425299750|ref|ZP_18689741.1| peptide chain release factor 1 [Escherichia coli 07798]
gi|254790880|sp|B7UQ99.1|RF1_ECO27 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|215264515|emb|CAS08882.1| peptide chain release factor RF-1 [Escherichia coli O127:H6 str.
E2348/69]
gi|312288904|gb|EFR16802.1| peptide chain release factor 1 [Escherichia coli 2362-75]
gi|377846926|gb|EHU11931.1| peptide chain release factor 1 [Escherichia coli DEC1A]
gi|377848662|gb|EHU13643.1| peptide chain release factor 1 [Escherichia coli DEC1C]
gi|377851813|gb|EHU16749.1| peptide chain release factor 1 [Escherichia coli DEC1B]
gi|377860629|gb|EHU25453.1| peptide chain release factor 1 [Escherichia coli DEC1D]
gi|377877161|gb|EHU41758.1| peptide chain release factor 1 [Escherichia coli DEC2B]
gi|377882394|gb|EHU46939.1| peptide chain release factor 1 [Escherichia coli DEC2D]
gi|377883158|gb|EHU47687.1| peptide chain release factor 1 [Escherichia coli DEC2C]
gi|377896571|gb|EHU60966.1| peptide chain release factor 1 [Escherichia coli DEC2E]
gi|408219356|gb|EKI43506.1| peptide chain release factor 1 [Escherichia coli 07798]
Length = 360
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/327 (46%), Positives = 230/327 (70%), Gaps = 6/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA +EL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQQLHVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDVR-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+ ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKA
Sbjct: 211 DAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
L VL A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + +
Sbjct: 271 LSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLD 330
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASF 418
++MEG+ LD+ I+ ++ + + D +A+
Sbjct: 331 EVMEGK-LDMLIEPIIQEHQADQLAAL 356
>gi|121534882|ref|ZP_01666701.1| peptide chain release factor 1 [Thermosinus carboxydivorans Nor1]
gi|121306481|gb|EAX47404.1| peptide chain release factor 1 [Thermosinus carboxydivorans Nor1]
Length = 356
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/364 (45%), Positives = 239/364 (65%), Gaps = 17/364 (4%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE + LENL++ P+ A+ +E+ K K KL + + E + + +D
Sbjct: 1 MLDKLQAIEDKYLELENLISDPDIIANQSEWQKHAKAHAKLTEIVTKFREYKKVLQGMDD 60
Query: 123 LKSLIYECSEDKDMLDMATEEL------CLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+ ++ E +D D +M EL C+ ++EE R+ +LPKD DE++ I+E
Sbjct: 61 AREMLKEKLDD-DFREMVEAELAELKAKCVRLEEELRI------LMLPKDPNDEKNVIIE 113
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAG GG+EA+LFA D+F+MY RY++ +GW+ E++ SDL G+KE +I G G Y +
Sbjct: 114 IRAGAGGDEAALFAGDLFRMYTRYAEAQGWRVELLDANSSDLGGFKEVVFSIQGDGAYSR 173
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGG 295
K+ESG+HRVQRVP TE SGR+HTS V+VA+LP+AD+V DV + DLRIDTY + G+GG
Sbjct: 174 FKYESGVHRVQRVPETEASGRIHTSTVTVAVLPEADDVDDVVINPSDLRIDTYCASGAGG 233
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH N T SAVR+TH+PTG+ + QDE+SQ N+ KA++VL AKL E + ++ R
Sbjct: 234 QHVNKTESAVRITHLPTGIVVQCQDEKSQIKNREKAMRVLRAKLLEAAQEEQRAQLAQTR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+G+GDRSERIRTYNFPQGRVTDHR+G+T H + ++ G +LD I+AL+ + + +
Sbjct: 294 KSQVGTGDRSERIRTYNFPQGRVTDHRIGLTLHKLDFILNG-DLDELINALVTADQAERL 352
Query: 416 ASFG 419
G
Sbjct: 353 KQVG 356
>gi|163746457|ref|ZP_02153815.1| peptide chain release factor 1 [Oceanibulbus indolifex HEL-45]
gi|161380342|gb|EDQ04753.1| peptide chain release factor 1 [Oceanibulbus indolifex HEL-45]
Length = 351
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/316 (48%), Positives = 224/316 (70%), Gaps = 6/316 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A+++ KE L+ + I + Q++++ + ++ +D +M ++A EEL
Sbjct: 28 ADFAALAKEYSDLKPVVDQIDLYQQLQRDLEEAQEML----KDPEMAELAREELPRLRAR 83
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
++ L +LLP+D AD + +LE+R GTGG+EA+LFA D+ +MY+RY++ +GW F++
Sbjct: 84 LPEVEGALQLALLPRDAADAKPAMLEIRPGTGGDEAALFAGDLLRMYQRYAEARGWGFDL 143
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ ++L G KE A I+G V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 144 IESQMTELGGVKEVVAHITGQNVFARLKFESGVHRVQRVPSTESGGRIHTSAATVAVLPE 203
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A++VD+ + DLRIDT RS G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH N+ K
Sbjct: 204 AEDVDIEINANDLRIDTMRSSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQHRNRDK 262
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A++VL A+LY+MER RI RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 263 AMQVLKARLYDMERGRIDSERSADRAAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYRL 322
Query: 391 SDMMEGENLDIFIDAL 406
+M+G +LD IDAL
Sbjct: 323 EAVMQG-DLDEIIDAL 337
>gi|203284116|ref|YP_002221856.1| peptide chain release factor A [Borrelia duttonii Ly]
gi|201083559|gb|ACH93150.1| peptide chain release factor A [Borrelia duttonii Ly]
Length = 359
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 238/351 (67%), Gaps = 20/351 (5%)
Query: 62 IKIMEQRVLAIERRSACLENLV-NQPEASP--AEYSKANKELRKLRDSMHLISELRTKQK 118
IKI+E+++ + NL+ NQ E S EY+ K K + H+++++ QK
Sbjct: 15 IKILEEKLQDV--------NLIKNQKEYSKIIKEYNYLEKIKEKKDEYQHILNQINENQK 66
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
I ++ +M D+ +E+ ++ +++ + LL +D+ D+++ I+E+R
Sbjct: 67 --------ILSEEDNLEMKDLIKQEIAHLYSKKDEIENTIKILLLHQDENDDKNIIIEIR 118
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGGEEA+LFA ++++MY +YS+KK WK E++ E++L G+KE S I G V+ KLK
Sbjct: 119 AGTGGEEAALFAHNLYEMYTKYSEKKKWKTELINFNETELGGFKEVSFEIKGKDVFKKLK 178
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
ESG+HRVQR+P+TE +G++ TSA +VA+LP+ ++ D+ + ++DLRID YRS G+GGQH
Sbjct: 179 HESGVHRVQRIPITESNGKLQTSAATVAVLPEVEDTDIEINDKDLRIDVYRSSGAGGQHV 238
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PTG+ Q+ERSQH NK +A+K+L A+LYE+E + RS R +Q
Sbjct: 239 NTTDSAVRITHLPTGIVAQCQNERSQHKNKEQAMKILRARLYELENLKKQEQRSNDRKQQ 298
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
+GSGDRSERIRTYNFPQ RVTDHR I+ + + ++M+GE LD ++ L L+
Sbjct: 299 VGSGDRSERIRTYNFPQNRVTDHRANISLYKLEEIMQGE-LDSLLNTLALK 348
>gi|187931103|ref|YP_001891087.1| peptide chain release factor 1 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|238691540|sp|B2SFF6.1|RF1_FRATM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|187712012|gb|ACD30309.1| peptide chain release factor 1 [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 361
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLILEHQADLLATM 358
>gi|21672964|ref|NP_661029.1| peptide chain release factor 1 [Chlorobium tepidum TLS]
gi|28201874|sp|Q8KG45.1|RF1_CHLTE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|21646023|gb|AAM71371.1| peptide chain release factor 1 [Chlorobium tepidum TLS]
Length = 357
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/345 (46%), Positives = 232/345 (67%), Gaps = 5/345 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +I+ + +E ++ PE A + K NKE L++ + E +K++D
Sbjct: 1 MFDKLQSIKDKFQTIEQQLSDPEVVADQNRFRKLNKEYSSLKEIVRAYDEWSRTKKQLDE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
S+ + D +M + EE + +L+ L LLPKD+AD R+ I+E+RAGTG
Sbjct: 61 AHSM-QKNENDPEMRALVEEEAGELQERLPKLEQQLKILLLPKDEADSRNAIIEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFES 241
G+EA LFA D+ +MY+RY++++GW + + V+E + G KE S +SG VYG LKFES
Sbjct: 120 GDEAGLFAADLMRMYQRYAERQGWSCQTLEVSEGSVPGSLKEVSLEVSGHNVYGILKFES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSA SVA+LP+A+EVDV +R EDL IDT+RSGG GGQ+ N
Sbjct: 180 GVHRVQRVPETETQGRIHTSAASVAVLPEAEEVDVEIRKEDLLIDTFRSGGKGGQNVNKV 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+AVR+TH+P+G+ ++ Q+ERSQ N+ +A+K+L +KLY+++ + SR+ LR + +
Sbjct: 240 ETAVRITHVPSGIVVACQEERSQLQNRERAMKMLRSKLYDLQIAEQQKSRADLRRSMVTT 299
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
GDRS +IRTYNFPQ RVTDHR+G T HA+ +M+GE LD I+AL
Sbjct: 300 GDRSAKIRTYNFPQSRVTDHRIGFTSHALPQIMQGE-LDPLIEAL 343
>gi|148546007|ref|YP_001266109.1| peptide chain release factor 1 [Pseudomonas putida F1]
gi|166223590|sp|A5VYG5.1|RF1_PSEP1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148510065|gb|ABQ76925.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudomonas
putida F1]
Length = 360
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/309 (48%), Positives = 219/309 (70%), Gaps = 4/309 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D D+ +MA EE+ A ++ L++ L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDLREMALEEVREAKEQLLTLEAQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 NVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S +
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA 291
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
+ R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G +D I+ LL +
Sbjct: 292 IASERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSG-GVDAVIEPLLAEY 350
Query: 411 EMDAIASFG 419
+ D +A+ G
Sbjct: 351 QADQLAALG 359
>gi|418019208|ref|ZP_12658729.1| peptide chain release factor 1 [Candidatus Regiella insecticola
R5.15]
gi|347605454|gb|EGY29899.1| peptide chain release factor 1 [Candidatus Regiella insecticola
R5.15]
Length = 293
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/288 (52%), Positives = 209/288 (72%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M ++A +EL A + L+ L LLP+D DERDC LE+RAGTGG+EA++FA
Sbjct: 3 DDLEMRELAQDELKEAKIRSEALEQKLQVLLLPQDPDDERDCFLEIRAGTGGDEAAIFAG 62
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ + WK EV+ + E + GYKE I+G GVYG+LKFESG HRVQRVP
Sbjct: 63 DMFRMYSRYAETRRWKMEVMNINEGEQGGYKEVITKITGNGVYGQLKFESGGHRVQRVPK 122
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P E +V + + DLRIDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 123 TESQGRIHTSACTVAVMPVLPETEVLEISDSDLRIDTFRSSGAGGQHVNTTDSAIRITHL 182
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA VL A++ E ER + +++ R +GSGDRS+R RT
Sbjct: 183 PTGIVVECQDERSQHKNKAKAKSVLAARIREAERQKRQQTQASERRNLLGSGDRSDRSRT 242
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YNFPQGRVTDHR+ +T + + ++MEG+ LDI I+ ++ + + D +A+
Sbjct: 243 YNFPQGRVTDHRINLTLYRLDEVMEGK-LDILIEPIVQEYQADQLAAL 289
>gi|398832820|ref|ZP_10590970.1| peptide chain release factor 1 [Herbaspirillum sp. YR522]
gi|398222599|gb|EJN08969.1| peptide chain release factor 1 [Herbaspirillum sp. YR522]
Length = 359
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/292 (52%), Positives = 208/292 (71%), Gaps = 2/292 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D A +E+ A L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 ELLSDPDMKDFAQDEIDAARARMAALEGDLQKMLLPKDPNDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E+V +ES+L GYKE A I+G+G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYTRYAERMRWQVEIVSASESELGGYKEVIARIAGLGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QD+RSQH NKA+A+KVL A++ +++ + + R IGSGDRSER
Sbjct: 247 THLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSKEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGR+TDHR+ +T + + +M+G +LD AL+ + + + +A G
Sbjct: 307 IRTYNFPQGRMTDHRINLTLYKLDFIMDG-DLDELTAALITEHQAELLAQLG 357
>gi|104780100|ref|YP_606598.1| peptide chain release factor 1 [Pseudomonas entomophila L48]
gi|166223588|sp|Q1IEX1.1|RF1_PSEE4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|95109087|emb|CAK13784.1| peptide chain release factor 1 [Pseudomonas entomophila L48]
Length = 360
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/307 (49%), Positives = 219/307 (71%), Gaps = 4/307 (1%)
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
R Q +++G ++L+ + D D+ +MA EE+ A ++ L+S L + LLPKD D R+
Sbjct: 56 RKVQDDLEGAQALLKDA--DPDLREMAVEEVREAKEQLVGLESQLQRMLLPKDPNDGRNV 113
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G V
Sbjct: 114 FLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGDSV 173
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGG 292
YGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DTYR+ G
Sbjct: 174 YGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASG 233
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRS 352
+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S + +
Sbjct: 234 AGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNAIA 293
Query: 353 KLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEM 412
R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G +D I+ LL + +
Sbjct: 294 SERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILAG-GVDAVIEPLLAEYQA 352
Query: 413 DAIASFG 419
D +A+ G
Sbjct: 353 DQLAALG 359
>gi|291541665|emb|CBL14775.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus
bromii L2-63]
Length = 357
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 236/346 (68%), Gaps = 6/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTK-QKEID 121
M +++ ++R + L + QP +P EY K KE++ + + + + + Q E D
Sbjct: 1 MFEKIEIFDKRYSELSERLYQPSVAGNPEEYQKIMKEIKSIEEIVLTYRKYKEAVQTEKD 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ I E + DK++ ++A EL A D K L L LLPKD DER+ I+E+R G
Sbjct: 61 SLE--ILEETSDKELKELAQIELDEAKDNIKNLAEDLKILLLPKDPNDERNVIVEIRGGA 118
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GGEE++LF+ +F+MY Y++KKG+K E++ E+++ GYKE S I G G Y + K+ES
Sbjct: 119 GGEESALFSAVLFRMYSMYAEKKGFKIEIINANETEIGGYKEISFMIEGEGAYSRFKYES 178
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GRVHTS +VA+LP+A++V++ + DL+IDT+RS G+GGQH N T
Sbjct: 179 GVHRVQRVPETESQGRVHTSTTTVAVLPEAEDVELEIDPNDLKIDTFRSSGAGGQHINKT 238
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SA+R+TH+PTGM + QDERSQ+ NK KALKVL ++L + ++ + ++ R Q+G+
Sbjct: 239 SSAIRITHLPTGMVVECQDERSQYKNKDKALKVLKSRLLKEKQDKQASEIAENRKMQVGT 298
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GDRSERIRTYN+PQGRVTDHR+G+T + + +++ G +LD IDAL+
Sbjct: 299 GDRSERIRTYNYPQGRVTDHRIGLTLYKLEEILNG-SLDEVIDALV 343
>gi|296313476|ref|ZP_06863417.1| peptide chain release factor 1 [Neisseria polysaccharea ATCC 43768]
gi|296839995|gb|EFH23933.1| peptide chain release factor 1 [Neisseria polysaccharea ATCC 43768]
Length = 358
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|187777270|ref|ZP_02993743.1| hypothetical protein CLOSPO_00822 [Clostridium sporogenes ATCC
15579]
gi|187774198|gb|EDU38000.1| peptide chain release factor 1 [Clostridium sporogenes ATCC 15579]
Length = 358
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/360 (43%), Positives = 244/360 (67%), Gaps = 10/360 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLREES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GG+EA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + A+ G G Y +LK+
Sbjct: 117 GAGGDEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAVKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+TH+PTG+ ++ QDE+SQ NK KA+KVL A+L+E + S ++ R Q+
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
G+GDRSERIRTYN+PQGR+TDHR+G+T + + ++G ++D I+AL+ + + + + G
Sbjct: 297 GTGDRSERIRTYNYPQGRITDHRIGLTLYKLETFLDG-DIDEVIEALVTEDQAEKMKDLG 355
>gi|242371609|ref|ZP_04817183.1| peptide chain release factor 1 [Staphylococcus epidermidis
M23864:W1]
gi|242350676|gb|EES42277.1| peptide chain release factor 1 [Staphylococcus epidermidis
M23864:W1]
Length = 358
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 237/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ + K +KE L+ ++ + ++K++E++ ++ ++ E
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRSYKSKKEELEDIEEMLRE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE +E ++ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESTALKNELPDMEEELKILLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ ++ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-VATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG +LD IDAL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-HLDEIIDALTLSEQTEKLKELNN 355
>gi|89256990|ref|YP_514352.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica LVS]
gi|115315350|ref|YP_764073.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica OSU18]
gi|134301375|ref|YP_001121343.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156503190|ref|YP_001429255.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254368245|ref|ZP_04984265.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica 257]
gi|290954490|ref|ZP_06559111.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica URFT1]
gi|421751108|ref|ZP_16188166.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis AS_713]
gi|421752963|ref|ZP_16189972.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 831]
gi|421756695|ref|ZP_16193597.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 80700103]
gi|421758565|ref|ZP_16195410.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 70102010]
gi|422939253|ref|YP_007012400.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FSC200]
gi|423051366|ref|YP_007009800.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica F92]
gi|424673831|ref|ZP_18110762.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 70001275]
gi|119361542|sp|Q2A1Q0.1|RF1_FRATH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361543|sp|Q0BKE8.1|RF1_FRATO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223558|sp|A7NE96.1|RF1_FRATF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223560|sp|A4IWC1.1|RF1_FRATW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|89144821|emb|CAJ80160.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica LVS]
gi|115130249|gb|ABI83436.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica OSU18]
gi|134049152|gb|ABO46223.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134254055|gb|EBA53149.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica 257]
gi|156253793|gb|ABU62299.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407294404|gb|AFT93310.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FSC200]
gi|409088776|gb|EKM88835.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 831]
gi|409089094|gb|EKM89148.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis AS_713]
gi|409092122|gb|EKM92102.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 70102010]
gi|409093356|gb|EKM93303.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 80700103]
gi|417435606|gb|EKT90496.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 70001275]
gi|421952088|gb|AFX71337.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica F92]
Length = 361
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|398848323|ref|ZP_10605144.1| peptide chain release factor 1 [Pseudomonas sp. GM84]
gi|398248763|gb|EJN34164.1| peptide chain release factor 1 [Pseudomonas sp. GM84]
Length = 360
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/309 (48%), Positives = 220/309 (71%), Gaps = 4/309 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
+ R Q +++G ++L+ + D D+ +MA EE+ A ++ L+S L + LLPKD D R
Sbjct: 54 DWRKVQDDLEGAQALLKDA--DPDLREMAVEEVRDAKEQLVGLESQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEILSENEGEHGGYKEVIARVEGD 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DTYR+
Sbjct: 172 SVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S +
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA 291
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
+ R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G +D I+ LL +
Sbjct: 292 IASERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILAG-GVDAVIEPLLAEY 350
Query: 411 EMDAIASFG 419
+ D +A+ G
Sbjct: 351 QADQLAALG 359
>gi|325294472|ref|YP_004280986.1| peptide chain release factor 1 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064920|gb|ADY72927.1| Peptide chain release factor 1 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 361
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 144/260 (55%), Positives = 196/260 (75%), Gaps = 1/260 (0%)
Query: 160 KSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLR 219
K L+PKD DE++ ILE+RAGTGGEEA+LFA D+F+MY RY++KKGWK E++ + E+ L
Sbjct: 101 KLLIPKDPNDEKNVILEIRAGTGGEEAALFAQDLFRMYTRYAEKKGWKVEILSLNETGLG 160
Query: 220 GYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLR 279
G KE A ISG G Y +LK+ESG+HRVQR+P+TE GR+HTSA +VAILP+A+EVD+ +
Sbjct: 161 GIKEVIATISGKGAYSRLKYESGVHRVQRIPVTESGGRIHTSAATVAILPEAEEVDIHID 220
Query: 280 NEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKL 339
+DL+IDTYRS G+GGQH NTT+SAVR+THIPTG+ ++ +ERSQ N+ KA+K+L A+L
Sbjct: 221 EKDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCSNERSQIQNRIKAMKILRARL 280
Query: 340 YEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENL 399
E+ + R QIGSGDRSE+IRTYNFP+ RVTDHR+ +T + + + ++GE L
Sbjct: 281 KELYERQQKEQLDSARRSQIGSGDRSEKIRTYNFPENRVTDHRIKLTLYNLEEFLDGE-L 339
Query: 400 DIFIDALLLQQEMDAIASFG 419
D IDAL ++ + I +
Sbjct: 340 DEMIDALTAAEQAEKIEALA 359
>gi|216264551|ref|ZP_03436543.1| peptide chain release factor 1 [Borrelia burgdorferi 156a]
gi|218249543|ref|YP_002374724.1| peptide chain release factor 1 [Borrelia burgdorferi ZS7]
gi|221217544|ref|ZP_03589014.1| peptide chain release factor 1 [Borrelia burgdorferi 72a]
gi|223889241|ref|ZP_03623829.1| peptide chain release factor 1 [Borrelia burgdorferi 64b]
gi|224532854|ref|ZP_03673469.1| peptide chain release factor 1 [Borrelia burgdorferi WI91-23]
gi|224534094|ref|ZP_03674677.1| peptide chain release factor 1 [Borrelia burgdorferi CA-11.2a]
gi|225549805|ref|ZP_03770769.1| peptide chain release factor 1 [Borrelia burgdorferi 118a]
gi|226321514|ref|ZP_03797040.1| peptide chain release factor 1 [Borrelia burgdorferi Bol26]
gi|387825850|ref|YP_005805303.1| peptide chain release factor 1 [Borrelia burgdorferi JD1]
gi|3914620|sp|O51214.1|RF1_BORBU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|226739097|sp|B7J1C9.1|RF1_BORBZ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|215981024|gb|EEC21831.1| peptide chain release factor 1 [Borrelia burgdorferi 156a]
gi|218164731|gb|ACK74792.1| peptide chain release factor 1 [Borrelia burgdorferi ZS7]
gi|221192607|gb|EEE18824.1| peptide chain release factor 1 [Borrelia burgdorferi 72a]
gi|223885274|gb|EEF56376.1| peptide chain release factor 1 [Borrelia burgdorferi 64b]
gi|224512243|gb|EEF82629.1| peptide chain release factor 1 [Borrelia burgdorferi WI91-23]
gi|224512793|gb|EEF83161.1| peptide chain release factor 1 [Borrelia burgdorferi CA-11.2a]
gi|225369613|gb|EEG99062.1| peptide chain release factor 1 [Borrelia burgdorferi 118a]
gi|226232703|gb|EEH31456.1| peptide chain release factor 1 [Borrelia burgdorferi Bol26]
gi|312148526|gb|ADQ31185.1| peptide chain release factor 1 [Borrelia burgdorferi JD1]
Length = 357
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 206/282 (73%), Gaps = 1/282 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS+KK WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDPLLDPLMI 345
>gi|365853802|ref|ZP_09394067.1| peptide chain release factor 1 [Lactobacillus parafarraginis F0439]
gi|363711960|gb|EHL95666.1| peptide chain release factor 1 [Lactobacillus parafarraginis F0439]
Length = 361
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 232/340 (68%), Gaps = 3/340 (0%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A+ R L L++ PE A ++ K +KE LRD++ ++ + K++D + ++
Sbjct: 10 AVVDRYDELNELISDPEVIADTQKFMKLSKEEADLRDTVAAYNKYKKVSKQLDDDEEMLR 69
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E +D D+ M +E+ D++++L+ L LLPKD D+++ I+E+ GG+E SL
Sbjct: 70 EKIDDADLESMVKDEIADFKDQKQKLEDQLKVMLLPKDPNDDKNIIMEIHGAAGGDEGSL 129
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F MY +Y++++GW+ E++ E+++ G+KE I+G VY KLK+E+G HRVQR
Sbjct: 130 FAADLFSMYSKYAERQGWQVEIIDKNETEVGGFKEIVLMITGDKVYSKLKYENGAHRVQR 189
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAVR+T
Sbjct: 190 VPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 249
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PTG+ +++QDERSQ N+AKA+K+L A++Y+ + + R IG+GDRSERI
Sbjct: 250 HLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYSQQEQDQYNAERKSAIGTGDRSERI 309
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
RTYN+PQ RVTDHR+G+T + + +M GE LD IDAL++
Sbjct: 310 RTYNYPQNRVTDHRIGLTLNKLDKIMNGE-LDDIIDALIV 348
>gi|388547180|ref|ZP_10150448.1| peptide chain release factor 1 [Pseudomonas sp. M47T1]
gi|388274755|gb|EIK94349.1| peptide chain release factor 1 [Pseudomonas sp. M47T1]
Length = 360
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/304 (50%), Positives = 217/304 (71%), Gaps = 4/304 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE+ A ++ L+ L + LLPKD D R+ LE
Sbjct: 59 QADLEGAQALLKDS--DPDMREMAVEEVREAKEQLVVLEGNLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGENVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DT+RS G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDERVAIEINPADLRVDTFRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SA+R+TH+PTG + Q+ERSQH N+A+A+ L AKL +M+ S + + R
Sbjct: 237 QHVNTTDSAIRITHLPTGTVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAANAIASER 296
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+GSGDRSERIRTYNFPQGRVTDHRV +T +++ ++M G +D I+ LL + + D +
Sbjct: 297 KLLVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVMAG-GVDAVIEPLLAEYQADQL 355
Query: 416 ASFG 419
A+ G
Sbjct: 356 AALG 359
>gi|387886341|ref|YP_006316640.1| peptide chain release factor 1 [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871157|gb|AFJ43164.1| peptide chain release factor 1 [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 361
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/298 (50%), Positives = 215/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + +RL+ L LLP+D D+ + LE+RAGT
Sbjct: 62 KEAAYEMLNEKDVELVEMAKEELKLANEAIERLEDELQILLLPRDPNDDANIFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EVV +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVVSASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKNLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLILEHQADLLATM 358
>gi|254373464|ref|ZP_04988952.1| peptide chain release factor 1 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571190|gb|EDN36844.1| peptide chain release factor 1 [Francisella novicida GA99-3549]
Length = 361
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|332140922|ref|YP_004426660.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|332140929|ref|YP_004426667.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410861179|ref|YP_006976413.1| peptide chain release factor 1 [Alteromonas macleodii AltDE1]
gi|238693241|sp|B4RSV6.1|RF1_ALTMD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|327550944|gb|AEA97662.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550951|gb|AEA97669.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410818441|gb|AFV85058.1| peptide chain release factor 1 [Alteromonas macleodii AltDE1]
Length = 361
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/343 (45%), Positives = 232/343 (67%), Gaps = 6/343 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
++ L+ PE ++ +KE +L D + + + Q+ + + ++ E +D +M
Sbjct: 19 VQALLGDPEVIGDQDKFRNLSKEFSQLEDVVAGFNAYQQAQENLASAQEMLNE--DDAEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A E +RL++ L LLPKD D+ +C LE+RAG GG+EA++FA D+F+M
Sbjct: 77 REMAQEEMKEAKGEIERLETELQVLLLPKDPNDDNNCFLEIRAGAGGDEAAIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY++ +GW+ E+V ES+ GYKE A +SG GVYG LKFESG HRVQRVP TE G
Sbjct: 137 YSRYAESRGWRVELVNANESEHGGYKEVVANVSGDGVYGVLKFESGGHRVQRVPETESQG 196
Query: 257 RVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
R+HTSA +VA+LP+ E + + + +LRIDT+R+ G+GGQH N T+SA+R+TH+PTG+
Sbjct: 197 RIHTSACTVAVLPEIPESEAIEINPAELRIDTFRASGAGGQHVNKTDSAIRITHLPTGLV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH N+AKA+ VL A+L ++E + + R +GSGDRSERIRTYNFPQ
Sbjct: 257 VECQDERSQHKNRAKAMSVLQARLNQIEEEKRAAEEASTRKSLVGSGDRSERIRTYNFPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GRVTDHR+ +T + + +++EG +L +D +L + + D +AS
Sbjct: 317 GRVTDHRINLTIYRLDEVVEG-DLKQLVDPILQEHQADLLASL 358
>gi|385793515|ref|YP_005826491.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678840|gb|AEE87969.1| Peptide chain release factor 1 [Francisella cf. novicida Fx1]
Length = 361
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQTAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|208779474|ref|ZP_03246819.1| peptide chain release factor 1 [Francisella novicida FTG]
gi|208744435|gb|EDZ90734.1| peptide chain release factor 1 [Francisella novicida FTG]
Length = 361
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|423124391|ref|ZP_17112070.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5250]
gi|376399836|gb|EHT12449.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5250]
Length = 393
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A ++ ++++
Sbjct: 72 SREYAQLSDVARCYTDWRQLQDDIEAAQMML----DDPEMREMAQEELREAKEKGEQMEQ 127
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 128 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 187
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 188 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 247
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 248 PDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 307
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E SR + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 308 GARIRAAEVSRRQQAEASERRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 367
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 368 GK-LDMLIEPIVQEYQADQLAAL 389
>gi|387825191|ref|YP_005824662.1| Peptide chain release factor 1 [Francisella cf. novicida 3523]
gi|332184657|gb|AEE26911.1| Peptide chain release factor 1 [Francisella cf. novicida 3523]
Length = 361
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANETIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|284047800|ref|YP_003398139.1| peptide chain release factor 1 [Acidaminococcus fermentans DSM
20731]
gi|283952021|gb|ADB46824.1| peptide chain release factor 1 [Acidaminococcus fermentans DSM
20731]
Length = 358
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/359 (44%), Positives = 239/359 (66%), Gaps = 12/359 (3%)
Query: 56 MLSN-DLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELR 114
M N D ++ +E R L +E + + E + Q E +Y+KA+ +L +++ R
Sbjct: 1 MFENLDKLQDLEDRYLDLEAKISDPEVIARQEEW--LKYTKAHAKL------TEIVTVYR 52
Query: 115 TKQKEIDGLKS--LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERD 172
+K +D K I + ED+++ MA EE+ + + L LLP+D DE++
Sbjct: 53 EYKKLVDTWKDDEAIVKAREDQELTAMAEEEMQELQPRLEAYEEKLTLLLLPRDPNDEKN 112
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
I+E+RAG GG+EA+LFA D+F+MY RY+++KGWK E++ + + L G+KE +SG
Sbjct: 113 IIMEIRAGAGGDEAALFAGDLFRMYTRYAEQKGWKVELMDSSPTGLGGFKEVVFMVSGTD 172
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
VY +KFESG+HRVQRVP TE GRVHTS V+VA++P+A EVD+ L D+R+DTYR+GG
Sbjct: 173 VYSHMKFESGVHRVQRVPDTESQGRVHTSTVTVAVMPEAQEVDIELNPADIRVDTYRAGG 232
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRS 352
+GGQ+ N T SAVR+THIPTG+ QDE+SQ N+ K L+VL +++ E E+ + + +
Sbjct: 233 AGGQYVNKTESAVRMTHIPTGIVAQCQDEKSQAKNREKCLRVLRSRILEAEQEKQRAATA 292
Query: 353 KLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+G+GDRSERIRTYN+PQGRVTDHR+G+T H + D++ G +LD +DAL++ ++
Sbjct: 293 AERKSQVGTGDRSERIRTYNYPQGRVTDHRIGLTLHKLPDIING-DLDELLDALMMAEQ 350
>gi|225175858|ref|ZP_03729851.1| peptide chain release factor 1 [Dethiobacter alkaliphilus AHT 1]
gi|225168782|gb|EEG77583.1| peptide chain release factor 1 [Dethiobacter alkaliphilus AHT 1]
Length = 356
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 238/349 (68%), Gaps = 4/349 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R LE L++ PE A E+ K KE +L + ++ E + ++++
Sbjct: 1 MFDKLKATEERFDELEKLISDPEVIARQDEWRKLTKEHSRLSEVVNAYREYQQVEQDLAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ + D++M +E+ ++++ L L LLP+D D+++ I+EVRAGTG
Sbjct: 61 AKEMLRDGG-DEEMSRFLKDEITANTEKKEELTEKLRLLLLPRDPNDDKNVIVEVRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY RY++++GWK EV+ E+D+ G+KE AI G G Y +LKFESG
Sbjct: 120 GDEAALFAGDLFRMYTRYAERQGWKTEVLDANETDIGGFKEVVFAIEGDGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSA +VA+LP+A++V+V + DLRID + S G GGQ NTT
Sbjct: 180 VHRVQRVPETESGGRIHTSAATVAVLPEAEDVEVDINQNDLRIDVFCSSGPGGQSVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+P+G+ +S QDE+SQH NK KA++VL A+L+E + ++ R Q+GSG
Sbjct: 240 SAVRITHLPSGIVVSCQDEKSQHKNKDKAMRVLRARLFEKAQEEAAAEQAAARKTQVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
DRSERIRTYNFPQGRV+DHR+G+T + + ++G +LD +DAL+ ++
Sbjct: 300 DRSERIRTYNFPQGRVSDHRIGMTLYKLDQFLDG-DLDEMVDALITSEQ 347
>gi|332295519|ref|YP_004437442.1| peptide chain release factor 1 [Thermodesulfobium narugense DSM
14796]
gi|332178622|gb|AEE14311.1| Peptide chain release factor 1 [Thermodesulfobium narugense DSM
14796]
Length = 361
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/348 (45%), Positives = 239/348 (68%), Gaps = 5/348 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKE 119
K+ E +L + R + L++ E +P++ ++E +L + ++ +EL +
Sbjct: 3 FKVFEGNILKLINRYKEINELLSSLEIINNPSKLISLSQEKAELEEVVNNYNELNKLKNY 62
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+ LK L + SED+++ +A EE + + L+S LL +LPKD DE++ ILE+RA
Sbjct: 63 LSDLKEL--KNSEDEEIKALAEEEFQVVEKNIENLESKLLNFILPKDPLDEKNIILEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K K E++ + E+ + G KEA +I G +Y +LKF
Sbjct: 121 GAGGEEAALFASELLRMYLRYAERKNAKTEILSINETGIGGIKEAIISIKGKRIYSRLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG HRVQRVP TE GR+HTS +VA+LP+ADE+D+ + +DL+IDT+R+GG+GGQH N
Sbjct: 181 ESGTHRVQRVPETESGGRIHTSTATVAVLPEADEIDITIDEKDLKIDTFRAGGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
T+SAVR+TH+PTG+ ++ QDERSQ NK KA+++L AK+ E +R + R Q+
Sbjct: 241 KTDSAVRITHLPTGIVVACQDERSQFQNKEKAMRILAAKILEEKRVASEKEIAMSRRIQV 300
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSE+IRTYNFPQGRVTDHR+ +T + ++++++G +LD IDAL+
Sbjct: 301 GSGDRSEKIRTYNFPQGRVTDHRINLTLYRLNEVLDG-DLDEIIDALI 347
>gi|401674994|ref|ZP_10806989.1| peptide chain release factor 1 [Enterobacter sp. SST3]
gi|400217759|gb|EJO48650.1| peptide chain release factor 1 [Enterobacter sp. SST3]
Length = 360
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 224/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWRQVQDDIETAQMML----DDPEMREMAQEELQDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|254374925|ref|ZP_04990406.1| peptide chain release factor 1 [Francisella novicida GA99-3548]
gi|151572644|gb|EDN38298.1| peptide chain release factor 1 [Francisella novicida GA99-3548]
Length = 361
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|134301001|ref|YP_001114497.1| peptide chain release factor 1 [Desulfotomaculum reducens MI-1]
gi|134053701|gb|ABO51672.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfotomaculum
reducens MI-1]
Length = 356
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/347 (44%), Positives = 235/347 (67%), Gaps = 8/347 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E R LE+ ++ PE A A++ + K L + + + + + ++++
Sbjct: 1 MYDKLQALEDRFEQLESQISDPEVMADRAKWQQLVKSHSDLAEVVDVFRQYKKAKEDLQE 60
Query: 123 LKSLIYECSED--KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
K ++ + E ++M+++ EEL I+E++ +LL LPKD D+++ I+E+R G
Sbjct: 61 NKQMLEDKLEPDFREMVELEIEELTSKIEEQENKLKILL---LPKDPNDDKNVIMEIRGG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY RY++KKGW+ E++ E+DL G+KE + I G G + LKFE
Sbjct: 118 TGGDEAALFAGDLFRMYSRYAEKKGWRTEIIDANETDLGGFKEVTFVIEGKGAFSTLKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D+RID + + G GGQ NT
Sbjct: 178 SGVHRVQRVPATESGGRIHTSAATVAVLPEAEEVDIDINANDIRIDLFCASGPGGQCVNT 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+THIPTG +S QDE+SQH NK KA++VL A+L + + + + R +G
Sbjct: 238 TQSAVRITHIPTGTVVSCQDEKSQHKNKDKAMRVLRARLLDKAQDEQQKAIAGARKSMVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SGDRSERIRTYNFPQ R+TDHR+G+T H + +++G +LD IDAL+
Sbjct: 298 SGDRSERIRTYNFPQNRITDHRIGLTLHRLEYVLQG-DLDELIDALI 343
>gi|419956812|ref|ZP_14472878.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606970|gb|EIM36174.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
GS1]
Length = 360
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 224/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|291276374|ref|YP_003516146.1| peptide chain release factor 1 [Helicobacter mustelae 12198]
gi|290963568|emb|CBG39400.1| peptide chain release factor 1 [Helicobacter mustelae 12198]
Length = 352
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/275 (52%), Positives = 201/275 (73%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
EDK + MA EEL + + K L+ + L+PKD D ++ LE+RAGTGG+EA +F
Sbjct: 68 EDKALAGMAKEELEVLRERAKNLEESIKTLLIPKDPNDGKNIYLELRAGTGGDEAGIFVG 127
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+ Y RY+ K WK E++ +E+++ GYKE A I G GVY +LKFESG HRVQRVP
Sbjct: 128 DLFRAYCRYADLKKWKVEIISSSENNVGGYKEIIALIKGEGVYSRLKFESGTHRVQRVPA 187
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA++VA++P+ DEV+V L DLRI+ +R+GG GGQ NTT+SAVR+THIP
Sbjct: 188 TESQGRIHTSAITVALMPEVDEVEVVLNPSDLRIEVFRAGGHGGQCVNTTDSAVRITHIP 247
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ +SIQDE+SQH NK KALK+L +++Y+ + + + ++ R Q+GSGDRSERIRTY
Sbjct: 248 TGINVSIQDEKSQHKNKEKALKILRSRIYDAQMEQQQVQNAQTRKNQVGSGDRSERIRTY 307
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
N+PQ R+TDHR+G+T +++ ++M NLD ID L
Sbjct: 308 NYPQNRLTDHRIGLTLYSLEEVMLSGNLDPIIDPL 342
>gi|261399946|ref|ZP_05986071.1| peptide chain release factor 1 [Neisseria lactamica ATCC 23970]
gi|269210396|gb|EEZ76851.1| peptide chain release factor 1 [Neisseria lactamica ATCC 23970]
Length = 358
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDIDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|389686011|ref|ZP_10177334.1| peptide chain release factor 1 [Pseudomonas chlororaphis O6]
gi|399008556|ref|ZP_10711026.1| peptide chain release factor 1 [Pseudomonas sp. GM17]
gi|425901493|ref|ZP_18878084.1| peptide chain release factor 1 [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|388550353|gb|EIM13623.1| peptide chain release factor 1 [Pseudomonas chlororaphis O6]
gi|397883269|gb|EJK99755.1| peptide chain release factor 1 [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398115992|gb|EJM05763.1| peptide chain release factor 1 [Pseudomonas sp. GM17]
Length = 360
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 228/330 (69%), Gaps = 4/330 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE ++ + ++ Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 33 AKFRAYSKEYAEVEPIVETYKQVLKVQADLEGAQALLKDS--DPDMREMAVEEVREAKEQ 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LVELESTLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGENVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
DE + + + DLRIDTYRS G+GGQH N T+SA+R+THIP+G+ + Q+ERSQH N+A
Sbjct: 211 PDEQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHIPSGIVVECQEERSQHKNRA 270
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
+A+ L AKL + + S + + R +GSGDRSERIRTYNFPQGRVTDHRV +T ++
Sbjct: 271 RAMSWLSAKLNDQQTSAAANAIASERKLLVGSGDRSERIRTYNFPQGRVTDHRVNLTLYS 330
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ +++ G ++ I+ LL + + D +A+ G
Sbjct: 331 LDEILAG-GVEAVIEPLLAEYQADQLAALG 359
>gi|386859421|ref|YP_006272127.1| Peptide chain release factor 1 [Borrelia crocidurae str. Achema]
gi|384934302|gb|AFI30975.1| Peptide chain release factor 1 [Borrelia crocidurae str. Achema]
Length = 357
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 237/351 (67%), Gaps = 20/351 (5%)
Query: 62 IKIMEQRVLAIERRSACLENLV-NQPEASP--AEYSKANKELRKLRDSMHLISELRTKQK 118
IKI+E+++ + NL+ NQ E S EY+ K K + H+++++ QK
Sbjct: 13 IKILEEKLQDV--------NLIKNQKEYSKIIKEYNYLEKIKEKKDEYQHILNQINENQK 64
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
I ++ +M D+ +E+ ++ +++ + LL +D D+++ I+E+R
Sbjct: 65 --------ILSEEDNLEMKDLIKQEIAHLYSKKDEIENTIKILLLHQDKNDDKNIIIEIR 116
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGGEEA+LFA ++++MY +YS+KK WK E++ E++L G+KE S I G V+ KLK
Sbjct: 117 AGTGGEEAALFAHNLYEMYTKYSEKKKWKTELINFNETELGGFKEVSFEIKGKDVFKKLK 176
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
ESG+HRVQR+P+TE +G++ TSA +VA+LP+ ++ D+ + ++DLRID YRS G+GGQH
Sbjct: 177 HESGVHRVQRIPITESNGKLQTSAATVAVLPEVEDTDIEINDKDLRIDVYRSSGAGGQHV 236
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PTG+ Q+ERSQH NK +A+K+L A+LYE+E + RS R +Q
Sbjct: 237 NTTDSAVRITHLPTGIVAQCQNERSQHKNKEQAMKILRARLYELENLKKQEQRSNDRKQQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
+GSGDRSERIRTYNFPQ RVTDHR I+ + + ++M+GE LD ++ L L+
Sbjct: 297 VGSGDRSERIRTYNFPQNRVTDHRANISLYKLEEIMQGE-LDSLLNTLALK 346
>gi|242309130|ref|ZP_04808285.1| peptide chain release factor 1 [Helicobacter pullorum MIT 98-5489]
gi|239524171|gb|EEQ64037.1| peptide chain release factor 1 [Helicobacter pullorum MIT 98-5489]
Length = 356
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/329 (47%), Positives = 228/329 (69%), Gaps = 9/329 (2%)
Query: 92 EYSKANKELRKL-RDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
E SK +L KL + S + L++ I+ KSL+ +DK++ D+A EE+ A +
Sbjct: 34 ELSKEQSDLEKLVQKSKQYLQNLQS----IEENKSLL----DDKELGDLAKEEIKEAEAQ 85
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
+ L+S + LLPKD DE++ LE+RAGTGG+EA +F D+FK Y RY++ KGWK E+
Sbjct: 86 NQELESEIKVLLLPKDPNDEKNIYLELRAGTGGDEAGIFVGDLFKAYVRYAESKGWKVEI 145
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E++ GYKE A I G G Y +LK+E G HRVQRVP TE GR+HTSA++VAI+P+
Sbjct: 146 ISSNENNFGGYKEVIALIKGKGAYSRLKYEGGTHRVQRVPETESQGRIHTSAITVAIMPE 205
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+THIPTG+++S+QDE+SQH NK K
Sbjct: 206 VDDVEVVINPNDLKIEVFRAGGHGGQCVNTTDSAVRITHIPTGISVSMQDEKSQHKNKDK 265
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
ALK+L A++YE E ++ R Q+GSGDRSERIRTYN+PQ R++DHR+G+T +++
Sbjct: 266 ALKILKARIYEAELEAQMEQNAEARKSQVGSGDRSERIRTYNYPQNRLSDHRIGLTLYSL 325
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
++M +LD I+ ++ + +A+ + G
Sbjct: 326 EEIMLNGDLDQVIEPIIAYFQAEALQNSG 354
>gi|444380487|ref|ZP_21179617.1| Peptide chain release factor 1 [Enterovibrio sp. AK16]
gi|443675443|gb|ELT82175.1| Peptide chain release factor 1 [Enterovibrio sp. AK16]
Length = 362
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/324 (47%), Positives = 220/324 (67%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + + +++++ + + E +D +M +MA EE+ A E +RL
Sbjct: 39 SKEYSQLEEVTMCFTSYKQAEEDLEAAQEMANE--DDPEMREMAQEEVKAAKAEIERLSD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+C LE+RAG GG+EA++FA D+F+ Y R+++KKGW+ EVV
Sbjct: 97 ELQVLLLPKDPNDERNCFLEIRAGAGGDEAAIFAGDLFRSYSRFAEKKGWRVEVVNANHG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG +KFESG HRVQRVP TE GRVHTSA +VAILP+ E ++
Sbjct: 157 EHGGYKEMIAKVSGEGAYGVMKFESGGHRVQRVPATESQGRVHTSACTVAILPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA+ VL
Sbjct: 217 PEINPADLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+L + E + ++ R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + + ++ME
Sbjct: 277 AARLIKAEEEKRAAEQASTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLDEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +LD I ++ + + D +A+
Sbjct: 337 G-DLDSLIQPIIQEFQADQLAALA 359
>gi|387889182|ref|YP_006319480.1| peptide chain release factor 1 [Escherichia blattae DSM 4481]
gi|414593613|ref|ZP_11443256.1| peptide chain release factor 1 [Escherichia blattae NBRC 105725]
gi|386924015|gb|AFJ46969.1| peptide chain release factor 1 [Escherichia blattae DSM 4481]
gi|403195513|dbj|GAB80908.1| peptide chain release factor 1 [Escherichia blattae NBRC 105725]
Length = 360
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L D + R Q++I+ +S++ +D +M +MA EEL A + + L++
Sbjct: 39 SKEYAQLSDVARCFLQWRQNQEDIETAESML----DDPEMKEMAQEELQAARQQREALET 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLP+D DER+ +E+RAGTGG+EA+LFA D+F+MY RY++ + W+ EV+ +E
Sbjct: 95 ELQVLLLPRDPDDERNAFVEIRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEVMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E ++ + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIRAAELAKRQQEEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEFQADQLAAL 356
>gi|70725918|ref|YP_252832.1| peptide chain release factor 1 [Staphylococcus haemolyticus
JCSC1435]
gi|119361616|sp|Q4L7Z9.1|RF1_STAHJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|68446642|dbj|BAE04226.1| peptide chain release factor 1 [Staphylococcus haemolyticus
JCSC1435]
Length = 358
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ PE + K +KE L+ ++ + + ++K++EI + ++ E
Sbjct: 8 VEERYEQLNEMLSDPEIVNDSDKLRKYSKEQADLQKTVDVYRDYKSKKEEIAEIDEMLNE 67
Query: 130 CSEDKDMLDMATEE---LCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
+EDK+ ++M EE L AI E E++L+ LL+ PKD DE+D I+E+RA GG+E
Sbjct: 68 -TEDKEEIEMLKEESASLKSAIPELEEQLKFLLI----PKDPNDEKDVIVEIRAAAGGDE 122
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A++FA D+ +MY +Y++ + +K E+V ESD GYKE S ++SG G Y KLKFE+G HR
Sbjct: 123 AAIFAGDLLRMYSKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAHR 182
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ I+ E+SQ N+ KALKVL A+LY+M+ + R +G+GDRS
Sbjct: 243 RITHLPTGV-IATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRS 301
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
ER+RTYN+PQ RVTDHR+G+T + +MEG LD IDAL L ++ + + +
Sbjct: 302 ERVRTYNYPQSRVTDHRIGLTLQKLDQIMEG-KLDEIIDALTLSEQTEKLKELNN 355
>gi|269138757|ref|YP_003295458.1| peptide chain release factor 1 [Edwardsiella tarda EIB202]
gi|387867437|ref|YP_005698906.1| Peptide chain release factor 1 [Edwardsiella tarda FL6-60]
gi|267984418|gb|ACY84247.1| peptide chain release factor 1 [Edwardsiella tarda EIB202]
gi|304558750|gb|ADM41414.1| Peptide chain release factor 1 [Edwardsiella tarda FL6-60]
Length = 360
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 225/331 (67%), Gaps = 14/331 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA----I 148
+ ++E +L D H + R Q ++ + ++ +D +M +MA EE+ A
Sbjct: 35 FRALSREYAQLTDVSHCFLDWRQVQDDLATAEMML----DDPEMREMAQEEIKAARGRLA 90
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
D E+ LQ LLL PKD DERDC LEVRAGTGG+EA+LFA D+F+MY RY++ + W+
Sbjct: 91 DLEQHLQILLL----PKDPDDERDCFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRI 146
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
E++ +E + GYKE A +SG G YG+LKFESG HRVQRVP TE GR+HTSA +VA++
Sbjct: 147 EIMSASEGEHGGYKEVIAKVSGDGAYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVM 206
Query: 269 PQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
P E ++ ++ DLRIDTYRS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH N
Sbjct: 207 PAVPEAELPQINPADLRIDTYRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKN 266
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
KAKA+ VL A++ E ++ + R +GSGDRS+R+RTYNFPQGRVTDHR+ +T
Sbjct: 267 KAKAMSVLGARIRAAEIAKRQQEVASTRRNLLGSGDRSDRVRTYNFPQGRVTDHRINLTL 326
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+ + ++MEG+ LD I+ ++ + + D +++
Sbjct: 327 YRLDEVMEGK-LDNLIEPIVQEHQADQLSAL 356
>gi|254369840|ref|ZP_04985850.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122799|gb|EDO66928.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FSC022]
Length = 361
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/298 (49%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQR+P TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRIPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|195941927|ref|ZP_03087309.1| peptide chain release factor 1 [Borrelia burgdorferi 80a]
Length = 357
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 206/282 (73%), Gaps = 1/282 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS+KK WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYRLEEFMQGE-LDPLLDPLMI 345
>gi|149914649|ref|ZP_01903179.1| peptide chain release factor 1 [Roseobacter sp. AzwK-3b]
gi|149811442|gb|EDM71277.1| peptide chain release factor 1 [Roseobacter sp. AzwK-3b]
Length = 351
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/342 (47%), Positives = 233/342 (68%), Gaps = 6/342 (1%)
Query: 79 LENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
E L Q A + +K +E +LR ++ E+R ++ +D L++ + D +M D
Sbjct: 16 FEYLEAQMSAGGGDIAKLGREYAELRP---VVEEIRAYRQVLDDLEAARAMLA-DPEMRD 71
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
+A EEL + +L+ L +LLPKD AD R ILE+R GTGGEEA+LFA D+ +MY
Sbjct: 72 LAEEELTALQARKPKLEEQLQLALLPKDKADARPAILEIRPGTGGEEAALFAGDLLRMYH 131
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY++ +GW FE++ E++L G KE A ++G V+ +LKFESG+HRVQRVP TE GR+
Sbjct: 132 RYAEARGWSFEIIEQNETELGGIKEVIARVAGDHVFARLKFESGVHRVQRVPETESGGRI 191
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +VA+LP+A++VDV++ DLRIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++
Sbjct: 192 HTSAATVAVLPEAEDVDVQIDPGDLRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIVVT- 250
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
E+SQH N+ A++VL +LY++ER R RS R+ Q+G+GDRSERIRTYNFPQGR+
Sbjct: 251 SSEKSQHRNREIAMQVLKTRLYDLERQRAADERSASRAAQVGTGDRSERIRTYNFPQGRM 310
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TDHR+ +T + + +M+G +LD IDAL + +A G
Sbjct: 311 TDHRINLTLYKLDQVMQG-DLDEVIDALRADAQATLLAEMGG 351
>gi|375261422|ref|YP_005020592.1| peptide chain release factor 1 [Klebsiella oxytoca KCTC 1686]
gi|397658524|ref|YP_006499226.1| peptide chain release factor 1 [Klebsiella oxytoca E718]
gi|402840452|ref|ZP_10888916.1| peptide chain release factor 1 [Klebsiella sp. OBRC7]
gi|423103536|ref|ZP_17091238.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5242]
gi|365910900|gb|AEX06353.1| peptide chain release factor 1 [Klebsiella oxytoca KCTC 1686]
gi|376385178|gb|EHS97899.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5242]
gi|394346815|gb|AFN32936.1| Peptide chain release factor 1 [Klebsiella oxytoca E718]
gi|402285669|gb|EJU34150.1| peptide chain release factor 1 [Klebsiella sp. OBRC7]
Length = 360
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A ++ ++++
Sbjct: 39 SREYAQLSDVARCYTDWRQLQDDIEAAQMML----DDPEMREMAQEELREAKEKGEQMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E SR + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIRAAEVSRRQQAEASERRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|225548553|ref|ZP_03769601.1| peptide chain release factor 1 [Borrelia burgdorferi 94a]
gi|225370816|gb|EEH00251.1| peptide chain release factor 1 [Borrelia burgdorferi 94a]
Length = 357
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 206/282 (73%), Gaps = 1/282 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS+KK WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDPLLDPLMI 345
>gi|293398675|ref|ZP_06642853.1| peptide chain release factor 1 [Neisseria gonorrhoeae F62]
gi|291611146|gb|EFF40243.1| peptide chain release factor 1 [Neisseria gonorrhoeae F62]
Length = 358
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEIRAGTGGGEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREVQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|409408061|ref|ZP_11256505.1| peptide chain release factor 1 [Herbaspirillum sp. GW103]
gi|386432517|gb|EIJ45344.1| peptide chain release factor 1 [Herbaspirillum sp. GW103]
Length = 355
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/292 (52%), Positives = 208/292 (71%), Gaps = 2/292 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A EE+ A + L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 63 ELLSDPDMKAFAQEEIDAARARMEALELDLQKMLLPKDPNDERNIFLEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V +ES+L GYKE A I+G G Y +LKFESG HRVQR
Sbjct: 123 FAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIAGFGAYSRLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+
Sbjct: 183 VPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKTDSAVRI 242
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QD+RSQH NKA+A+KVL A++ +++ + R IGSGDRSER
Sbjct: 243 THLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLREQQSKEAATRKSLIGSGDRSER 302
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGR+TDHR+ +T + + +M+G +LD +AL+ + + + +A G
Sbjct: 303 IRTYNFPQGRMTDHRINLTLYKLDFIMDG-DLDELTNALITEHQAELLAQLG 353
>gi|330502033|ref|YP_004378902.1| peptide chain release factor 1 [Pseudomonas mendocina NK-01]
gi|328916319|gb|AEB57150.1| peptide chain release factor 1 [Pseudomonas mendocina NK-01]
Length = 360
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/330 (46%), Positives = 226/330 (68%), Gaps = 4/330 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+++ +KE ++ + ELR Q +++G ++L+ + D D+ +MA E+ A +
Sbjct: 33 SQFRAYSKEYAEIEPVIATFRELRKVQGDLEGAQALLKDS--DPDLREMAELEVDQAKEA 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ EV
Sbjct: 91 LVGLEDKLQRMLLPKDPNDGRNVYLEIRAGTGGDEAAIFSGDLFRMYSRYAEKQGWRVEV 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSANEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPE 210
Query: 271 ADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
DE + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH N+A
Sbjct: 211 PDEQAAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQHKNRA 270
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
KA+ L AKL + + + H S+ R +GSGDRSERIRTYNFPQGRVTDHR+ +T ++
Sbjct: 271 KAMAWLAAKLQDQQDAAAHKEISETRKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYS 330
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+++++ G ++ I+ LL + + D +A+ G
Sbjct: 331 LNEVIAG-GVEAVIEPLLAEYQADQLAALG 359
>gi|432372500|ref|ZP_19615545.1| peptide chain release factor 1 [Escherichia coli KTE11]
gi|430896993|gb|ELC19220.1| peptide chain release factor 1 [Escherichia coli KTE11]
Length = 360
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 230/323 (71%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q++I+ + ++ +D +M +MA +ELC A ++ ++L+
Sbjct: 39 SREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELCEAKEKSEQLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E
Sbjct: 95 QLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAETRRWRVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIIQEHQADQLAAL 356
>gi|440751104|ref|ZP_20930341.1| Peptide chain release factor 1 [Mariniradius saccharolyticus AK6]
gi|436480309|gb|ELP36553.1| Peptide chain release factor 1 [Mariniradius saccharolyticus AK6]
Length = 357
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 160/357 (44%), Positives = 238/357 (66%), Gaps = 4/357 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A++ R + L+ QP+A ++Y+K NKE + L + L + + ID
Sbjct: 1 MLDKLQALKDRFIEVGQLIIQPDAMSDMSKYTKLNKEYKDLEKIVTLYDDYKLVLDNIDS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ E +D D +MA EL +E L+ + ++L+PKD D +D ILE+RAGTG
Sbjct: 61 TKEIL-EKEKDPDFREMAKAELDELRQKETELEETIKQALIPKDPNDSKDSILEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MY+R+ +K+GWK V+ +T GYKE + I+G VYG +K+ESG
Sbjct: 120 GDEAAIFAGDLFRMYQRFCEKQGWKLTVLDLTFGSSGGYKEIISTITGADVYGMMKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +VA+LP+ DEV+V + D+R DT+ S G GGQ NTT
Sbjct: 180 VHRVQRVPATETQGRVHTSAATVAVLPEMDEVEVNINMNDVRKDTFCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+P+G+ ++ QDE+SQ N KALKVL ++LYE+E + + + R +GSG
Sbjct: 240 SAVRLTHLPSGLVVTCQDEKSQIKNFEKALKVLRSRLYEIELEKHNEAVGAQRRSMVGSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
DRS++IRTYN+PQ RVTDHR+ T + + D+M+G N++ FI AL L + ++ + + G
Sbjct: 300 DRSDKIRTYNYPQSRVTDHRINKTVYNLPDVMDG-NIEDFISALRLAENLEKMNAGG 355
>gi|414154192|ref|ZP_11410512.1| Peptide chain release factor 1 [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411454377|emb|CCO08416.1| Peptide chain release factor 1 [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 355
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/348 (46%), Positives = 235/348 (67%), Gaps = 10/348 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E + LE+ ++ P A A + + K +L + + + + ++++
Sbjct: 1 MLAKLQALEDKYLQLESQISDPAVMADRARWQQLVKSHSELGEVVDVFRRYKKARQDLQD 60
Query: 123 LKSLIYECSED--KDMLDMATEELCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E E ++M+++ EEL I+E E++L+ LLL PKD DE++ I+E+R
Sbjct: 61 NKQMLEEKLEPDFREMVELEIEELESKIEELEQKLKILLL----PKDPNDEKNVIMEIRG 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+F+MY RY++KKGW+ EV+ E+DL G+KE + I G G Y LKF
Sbjct: 117 GTGGEEAALFAGDLFRMYCRYAEKKGWRTEVIDANETDLGGFKEVTFVIEGKGAYSTLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + DLRID + + G GGQ N
Sbjct: 177 ESGVHRVQRVPATESGGRIHTSAATVAVLPEAEEVDIEINPNDLRIDLFCASGPGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT SAVR+TH+PTG +S QDE+SQH NK KA++VL A+L + + + + R +
Sbjct: 237 TTQSAVRITHLPTGTVVSCQDEKSQHKNKEKAMRVLRARLLDKAQEEQQKAIAGARKSMV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQ RVTDHR+G+T H + +++GE LD I+AL+
Sbjct: 297 GSGDRSERIRTYNFPQNRVTDHRIGLTLHRLESVLQGE-LDELIEALI 343
>gi|291617195|ref|YP_003519937.1| PrfA [Pantoea ananatis LMG 20103]
gi|378767534|ref|YP_005196002.1| peptide chain release factor 1 [Pantoea ananatis LMG 5342]
gi|386015587|ref|YP_005933868.1| peptide chain release factor 1 PrfA [Pantoea ananatis AJ13355]
gi|386079669|ref|YP_005993194.1| peptide chain release factor 1 PrfA [Pantoea ananatis PA13]
gi|291152225|gb|ADD76809.1| PrfA [Pantoea ananatis LMG 20103]
gi|327393650|dbj|BAK11072.1| peptide chain release factor 1 PrfA [Pantoea ananatis AJ13355]
gi|354988850|gb|AER32974.1| peptide chain release factor 1 PrfA [Pantoea ananatis PA13]
gi|365187015|emb|CCF09965.1| peptide chain release factor 1 [Pantoea ananatis LMG 5342]
Length = 360
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D + + Q +I+ K L+ +D +M DMA EEL A ++ + L+
Sbjct: 39 SREYAQLTDVTRCFRDWQQNQDDIETAKMLL----DDPEMRDMAQEELLEAREKSESLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E+V E
Sbjct: 95 QLQLLLLPKDPDDERDCFVEVRAGTGGDEAAIFAGDLFRMYSRYAESRRWRVEIVSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A + G G YG+ KFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIARVMGEGAYGRFKFESGGHRVQRVPETESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PEINPSDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ H + + R +GSGDRS+RIRTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIHAAEMAKRHEAEASTRRNLLGSGDRSDRIRTYNFPQGRVTDHRINLTIYRLDETME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD I+ ++ + + D +A+
Sbjct: 335 GK-LDSLIEPIVQEYQADQLAAL 356
>gi|365970932|ref|YP_004952493.1| peptide chain release factor 1 [Enterobacter cloacae EcWSU1]
gi|365749845|gb|AEW74072.1| Peptide chain release factor 1 [Enterobacter cloacae EcWSU1]
Length = 360
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELLDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSANDG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|421538690|ref|ZP_15984865.1| peptide chain release factor 1 [Neisseria meningitidis 93003]
gi|402316360|gb|EJU51909.1| peptide chain release factor 1 [Neisseria meningitidis 93003]
Length = 358
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|378579405|ref|ZP_09828072.1| peptide chain release factor RF-1 [Pantoea stewartii subsp.
stewartii DC283]
gi|377817879|gb|EHU00968.1| peptide chain release factor RF-1 [Pantoea stewartii subsp.
stewartii DC283]
Length = 360
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/323 (48%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D + + Q +I+ K L+ +D +M DMA EEL A ++ L+
Sbjct: 39 SREYAQLTDVTRCFRDWQQNQDDIETAKMLL----DDPEMRDMAQEELQAAREKTDALEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E+V +
Sbjct: 95 QLQLLLLPKDPDDERDCFVEVRAGTGGDEAAIFAGDLFRMYSRYAESRRWRVEIVSANDG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A I G G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIARIMGDGAYGRLKFESGGHRVQRVPETESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PEINPSDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ H + + R +GSGDRS+RIRTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIHAAEMAKRHEAEASTRRNLLGSGDRSDRIRTYNFPQGRVTDHRINLTLYRLDETME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD I+ ++ + + D +A+
Sbjct: 335 GK-LDSLIEPIVQEYQADQLAAL 356
>gi|334124406|ref|ZP_08498415.1| peptide chain release factor RF1 [Enterobacter hormaechei ATCC
49162]
gi|333389405|gb|EGK60571.1| peptide chain release factor RF1 [Enterobacter hormaechei ATCC
49162]
Length = 360
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 224/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|359782584|ref|ZP_09285804.1| peptide chain release factor 1 [Pseudomonas psychrotolerans L19]
gi|359369404|gb|EHK69975.1| peptide chain release factor 1 [Pseudomonas psychrotolerans L19]
Length = 360
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/329 (46%), Positives = 223/329 (67%), Gaps = 4/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE +L +E R Q +++G ++L+ + D D+ +MA EE+ A
Sbjct: 34 QFRAYSKEYAELEPVSQAFTEYRKVQADLEGAQALLKDS--DPDLREMAEEEVGTAKARL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L+ L + +LP+D D R+ LE+RAGTGG+EA++FA D+F+MY RY++++GW+ EV+
Sbjct: 92 QELEDELQRMMLPRDPNDGRNVFLEIRAGTGGDEAAIFAGDLFRMYSRYAERQGWRLEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SENEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DE + + DLR+DTYRS G+GGQH N T+SAVR+TH+PTG+ + Q+ERSQH N+AK
Sbjct: 212 DEQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAVRITHLPTGIVVECQEERSQHKNRAK 271
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ L AKL + + + H S R +GSGDRSERIRTYNFPQGRVTDHR+ +T +++
Sbjct: 272 AMAWLSAKLNDQQDAAAHKEMSDTRRLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYSL 331
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+++ G ++ ID LL + + D +A+ G
Sbjct: 332 GEVVNG-DVQQVIDPLLQEYQADQLAALG 359
>gi|189424095|ref|YP_001951272.1| peptide chain release factor 1 [Geobacter lovleyi SZ]
gi|238692126|sp|B3E628.1|RF1_GEOLS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189420354|gb|ACD94752.1| peptide chain release factor 1 [Geobacter lovleyi SZ]
Length = 355
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 239/355 (67%), Gaps = 7/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E R LE+L++ P A+ E+ K ++E L LI R +K +D
Sbjct: 1 MFDKIQDLEIRFQELESLLSDPTVIANQPEFRKLSREHADL---APLIEAFRRYKKVLDE 57
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
L+ E D +M +MA EE+ E++RL + + LLPKD D RD ILE+RAGTG
Sbjct: 58 LEE-NQELLADPEMKEMAEEEISRLSQEKERLDAEIKILLLPKDPNDSRDVILEIRAGTG 116
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+E++LF+ D+F+MY R+++K WK E++ +ES+ GYKE A+I G VY KLK+ESG
Sbjct: 117 GDESALFSGDLFRMYSRFAEKNRWKVEMLSCSESERGGYKEVIASIEGQDVYAKLKYESG 176
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VAI+ +A++VD+ + DL+ID YRS G+GGQH NTT+
Sbjct: 177 THRVQRVPETEAQGRIHTSACTVAIMAEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTD 236
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG ++ Q+ERSQ N+AKA+KVL ++ + + + + R +Q+GSG
Sbjct: 237 SAVRITHIPTGTVVACQEERSQIKNRAKAMKVLKTRILDTIQQEQNAKLAADRKQQVGSG 296
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
DRSERIRTYNFPQGR+TDHR+G+T + + +M G +++ DAL +M+A+ +
Sbjct: 297 DRSERIRTYNFPQGRMTDHRIGLTLYRLDSIMAG-DIEEITDALRAHYQMEALKA 350
>gi|423195701|ref|ZP_17182284.1| peptide chain release factor 1 [Aeromonas hydrophila SSU]
gi|404633113|gb|EKB29678.1| peptide chain release factor 1 [Aeromonas hydrophila SSU]
Length = 362
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/330 (44%), Positives = 221/330 (66%), Gaps = 4/330 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H + R ++ ++ + ++ E +D D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQQFRQAEENLEATRQMLEE--DDADLREMAQEELPLAKATFE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLP+D D+ +C LE+RAG GG+EA++FA D+F+MY RY++++GW+ +V
Sbjct: 93 EQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRVSIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A + G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNDGEHGGYKEVIAKVEGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH N+AKA
Sbjct: 213 EAEQIEINPSDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ VL A+L E R + R +GSGDRSERIRTYN+PQGR+++HR+ +T + +
Sbjct: 273 MSVLSARLQAAEDERHRAAEQSTRRNLVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLG 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFGST 421
++MEG +LD I+ ++ + + D +AS +
Sbjct: 333 EIMEG-DLDCVINPMIQEYQADQLASLAES 361
>gi|313667936|ref|YP_004048220.1| peptide chain release factor I [Neisseria lactamica 020-06]
gi|313005398|emb|CBN86832.1| peptide chain release factor I [Neisseria lactamica 020-06]
Length = 358
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDIDNYRKLTREHAELSPVVEVFQHYRRAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|262274708|ref|ZP_06052519.1| peptide chain release factor 1 [Grimontia hollisae CIP 101886]
gi|262221271|gb|EEY72585.1| peptide chain release factor 1 [Grimontia hollisae CIP 101886]
Length = 362
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 221/324 (68%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + S + + +++ + + E +D +M +MA EE+ A ++ +RL
Sbjct: 39 SKEYSQLEEVIKCFSAYKQAESDLEAAQEMANE--DDPEMREMAQEEVKAAKEDIERLTD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+C LE+RAG GG+EA++FA D+F+MY R+++ KGW+ EV+
Sbjct: 97 ELQVLLLPKDPNDERNCFLEIRAGAGGDEAAIFAGDLFRMYSRFAESKGWRVEVINANHG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG +KFESG HRVQRVP TE GRVHTSA +VAILP+ E ++
Sbjct: 157 EHGGYKEMIAKVNGDGAYGVMKFESGGHRVQRVPATESQGRVHTSACTVAILPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA+ VL
Sbjct: 217 PEINPADLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+L + E + ++ R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + + ++ME
Sbjct: 277 AARLIKAEEEKRAAEQASTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLDEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +LD I ++ + + D +A+
Sbjct: 337 G-DLDSLIQPIIHEFQADQLAALA 359
>gi|296127053|ref|YP_003634305.1| peptide chain release factor 1 [Brachyspira murdochii DSM 12563]
gi|296018869|gb|ADG72106.1| peptide chain release factor 1 [Brachyspira murdochii DSM 12563]
Length = 358
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/307 (50%), Positives = 214/307 (69%), Gaps = 3/307 (0%)
Query: 113 LRTKQKEIDGLKSLIYECSEDKDMLDMATEELC-LAIDEEKRLQSLLLKSLLPKDDADER 171
L+T KEID +I DKD+ +MA E+ L +E + SL L LLPKD D +
Sbjct: 52 LKTVLKEIDDSNEMINNPETDKDLKEMALAEIEELNQKKEDIINSLRL-LLLPKDKNDGK 110
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ I+E+R GTGG+E++LF D+F+MY R+ ++ K E++ + ++L GYKE ++SG
Sbjct: 111 NIIIEIRVGTGGDESALFVGDLFRMYSRFIERANLKMEIIDTSPTELGGYKEVIFSVSGK 170
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSG 291
Y LKFESG HRVQR+P TE GR+HTSA +VA++P+A E DV +++ED+R+D +RS
Sbjct: 171 NAYRALKFESGTHRVQRIPATESGGRIHTSASTVAVMPEAMESDVVIKDEDIRVDIFRSS 230
Query: 292 GSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSR 351
G GGQ NTT+SAVR+TH+PTG+ + QDE+SQH NKAKALKVL A++YE E +
Sbjct: 231 GPGGQSVNTTDSAVRITHLPTGLVVQCQDEKSQHKNKAKALKVLRARIYEKEEAERKAKE 290
Query: 352 SKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
+K R EQIGSGDRSERIRTYNFPQ RVTDHR+ +T + + M+GE +I DAL +++
Sbjct: 291 AKERREQIGSGDRSERIRTYNFPQNRVTDHRINLTLYKLDRFMDGEITEI-TDALFKKEQ 349
Query: 412 MDAIASF 418
D +AS+
Sbjct: 350 EDMLASY 356
>gi|421720989|ref|ZP_16160266.1| peptide chain release factor 1 [Helicobacter pylori R055a]
gi|407225773|gb|EKE95543.1| peptide chain release factor 1 [Helicobacter pylori R055a]
Length = 352
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 226/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EAS+F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEASIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|121635327|ref|YP_975572.1| peptide chain release factor 1 [Neisseria meningitidis FAM18]
gi|385340540|ref|YP_005894412.1| peptide chain release factor 1 [Neisseria meningitidis G2136]
gi|416176949|ref|ZP_11609868.1| peptide chain release factor 1 [Neisseria meningitidis M6190]
gi|416190790|ref|ZP_11615901.1| peptide chain release factor 1 [Neisseria meningitidis ES14902]
gi|421544981|ref|ZP_15991048.1| peptide chain release factor 1 [Neisseria meningitidis NM140]
gi|421547070|ref|ZP_15993109.1| peptide chain release factor 1 [Neisseria meningitidis NM183]
gi|421549316|ref|ZP_15995333.1| peptide chain release factor 1 [Neisseria meningitidis NM2781]
gi|421553276|ref|ZP_15999241.1| peptide chain release factor 1 [Neisseria meningitidis NM576]
gi|421557699|ref|ZP_16003598.1| peptide chain release factor 1 [Neisseria meningitidis 80179]
gi|433467767|ref|ZP_20425217.1| peptide chain release factor 1 [Neisseria meningitidis 87255]
gi|433493073|ref|ZP_20450160.1| peptide chain release factor 1 [Neisseria meningitidis NM586]
gi|433495189|ref|ZP_20452252.1| peptide chain release factor 1 [Neisseria meningitidis NM762]
gi|433497362|ref|ZP_20454392.1| peptide chain release factor 1 [Neisseria meningitidis M7089]
gi|433499455|ref|ZP_20456460.1| peptide chain release factor 1 [Neisseria meningitidis M7124]
gi|433501391|ref|ZP_20458373.1| peptide chain release factor 1 [Neisseria meningitidis NM174]
gi|433503455|ref|ZP_20460413.1| peptide chain release factor 1 [Neisseria meningitidis NM126]
gi|166223577|sp|A1KV95.1|RF1_NEIMF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|120867033|emb|CAM10796.1| peptide chain release factor I [Neisseria meningitidis FAM18]
gi|325132818|gb|EGC55498.1| peptide chain release factor 1 [Neisseria meningitidis M6190]
gi|325138721|gb|EGC61273.1| peptide chain release factor 1 [Neisseria meningitidis ES14902]
gi|325198784|gb|ADY94240.1| peptide chain release factor 1 [Neisseria meningitidis G2136]
gi|402322042|gb|EJU57512.1| peptide chain release factor 1 [Neisseria meningitidis NM183]
gi|402322268|gb|EJU57732.1| peptide chain release factor 1 [Neisseria meningitidis NM140]
gi|402324138|gb|EJU59575.1| peptide chain release factor 1 [Neisseria meningitidis NM2781]
gi|402328408|gb|EJU63779.1| peptide chain release factor 1 [Neisseria meningitidis NM576]
gi|402333862|gb|EJU69158.1| peptide chain release factor 1 [Neisseria meningitidis 80179]
gi|432201652|gb|ELK57728.1| peptide chain release factor 1 [Neisseria meningitidis 87255]
gi|432226864|gb|ELK82584.1| peptide chain release factor 1 [Neisseria meningitidis NM586]
gi|432228721|gb|ELK84417.1| peptide chain release factor 1 [Neisseria meningitidis NM762]
gi|432232319|gb|ELK87965.1| peptide chain release factor 1 [Neisseria meningitidis M7089]
gi|432233021|gb|ELK88655.1| peptide chain release factor 1 [Neisseria meningitidis M7124]
gi|432233860|gb|ELK89484.1| peptide chain release factor 1 [Neisseria meningitidis NM174]
gi|432239476|gb|ELK95029.1| peptide chain release factor 1 [Neisseria meningitidis NM126]
Length = 358
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|118498113|ref|YP_899163.1| peptide chain release factor 1 [Francisella novicida U112]
gi|194323340|ref|ZP_03057124.1| peptide chain release factor 1 [Francisella novicida FTE]
gi|166223559|sp|A0Q844.1|RF1_FRATN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|118424019|gb|ABK90409.1| protein chain release factor A [Francisella novicida U112]
gi|194322704|gb|EDX20184.1| peptide chain release factor 1 [Francisella tularensis subsp.
novicida FTE]
Length = 361
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMLMLKSKLLQAEIDKQQKEQSDTRKSLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLVLEHQADLLATM 358
>gi|399993158|ref|YP_006573398.1| peptide chain release factor 1 [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398657713|gb|AFO91679.1| peptide chain release factor 1 [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 351
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/315 (48%), Positives = 219/315 (69%), Gaps = 8/315 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+LR ++I + L+ + E D DM ++A EEL + L +LLP
Sbjct: 38 SDLRPVAEQITAYRRLLCDLEEAEQMLADPDMAELAEEELPQLRAALPEAEHALQLALLP 97
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
+D+AD R +LE+R GTGG+EA+LFA D+ +MY+RY++ +GW FE++ ++L G KE
Sbjct: 98 RDEADARPAMLEIRPGTGGDEAALFAGDLLRMYQRYAEARGWGFEIIEEQTTELGGLKEV 157
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A + G V+ +LK+ESG+HRVQRVP+TE GR+HTSA +VA+LP+A++VD+R+ DLR
Sbjct: 158 VAHVKGENVFARLKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDLRIDPGDLR 217
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
IDT R+ G+GGQH NTT+SAVR+THIPTG+ I + E+SQH N+ A++V+ +LY++ER
Sbjct: 218 IDTMRASGAGGQHVNTTDSAVRITHIPTGI-IVVSSEKSQHRNREIAMQVMRTRLYDLER 276
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
RI RS R+ Q+GSGDRSERIRTYNFPQGR++DHR+ +T + + +M+G +LD ID
Sbjct: 277 QRIDSERSADRASQVGSGDRSERIRTYNFPQGRMSDHRINLTLYKLDQIMQG-DLDEIID 335
Query: 405 ALLLQQEMDAIASFG 419
AL + +A G
Sbjct: 336 ALTADDQARLLAEMG 350
>gi|339485721|ref|YP_004700249.1| peptide chain release factor 1 [Pseudomonas putida S16]
gi|431800788|ref|YP_007227691.1| peptide chain release factor 1 [Pseudomonas putida HB3267]
gi|338836564|gb|AEJ11369.1| peptide chain release factor 1 [Pseudomonas putida S16]
gi|430791553|gb|AGA71748.1| peptide chain release factor 1 [Pseudomonas putida HB3267]
Length = 360
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/309 (48%), Positives = 219/309 (70%), Gaps = 4/309 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D D+ +MA EE+ A ++ L+S L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDLREMAVEEVREAKEQLLTLESQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 SVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S +
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA 291
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
+ R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G ++ I+ LL +
Sbjct: 292 IATERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILAG-GVEAVIEPLLAEY 350
Query: 411 EMDAIASFG 419
+ D +A+ G
Sbjct: 351 QADQLAALG 359
>gi|121997785|ref|YP_001002572.1| peptide chain release factor 1 [Halorhodospira halophila SL1]
gi|166223563|sp|A1WVQ8.1|RF1_HALHL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|121589190|gb|ABM61770.1| bacterial peptide chain release factor 1 (bRF-1) [Halorhodospira
halophila SL1]
Length = 363
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/330 (45%), Positives = 227/330 (68%), Gaps = 4/330 (1%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
P+++++ ++E +L + ++ R + + ++++ + D ++ +A +EL A
Sbjct: 32 PSKFAELSREYARLEPVVQDLNAYRAEADTVASAEAMLNDG--DAEIRALAEQELAEAQR 89
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
+ L+ L + L+P D D+R+ LEVRAG GG+EA+LFA D+ +MY RY++++GWK E
Sbjct: 90 RLEELEGALQRHLVPTDPNDQRNIFLEVRAGAGGDEAALFAGDLLRMYMRYAERQGWKTE 149
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
++ E + GY+E A +SG VY +LKFESG HRVQRVP TE GR+HTSA +VAILP
Sbjct: 150 ILSAREGEHGGYREVIARVSGRSVYARLKFESGAHRVQRVPATESQGRIHTSACTVAILP 209
Query: 270 QADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
+ DEV + + DLR+DT+RS G+GGQH NTT+SA+R+TH+P+G+ + QDERSQ+ N+
Sbjct: 210 ELDEVSAIEVNTADLRVDTFRSSGAGGQHVNTTDSAIRITHLPSGLVVECQDERSQNKNR 269
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
AKA+ +L A+L E ER++ RS+ R +GSGDRSERIRTYNFPQGRVTDHR+G+T +
Sbjct: 270 AKAIALLQARLTEQERAKQQSERSEQRRLAVGSGDRSERIRTYNFPQGRVTDHRIGLTLY 329
Query: 389 AISDMMEGENLDIFIDALLLQQEMDAIASF 418
+ +MEG +D +D L + + +A+A
Sbjct: 330 KLEQVMEG-GMDELLDGLTQEHQAEALAEI 358
>gi|148981991|ref|ZP_01816579.1| peptide chain release factor 1 [Vibrionales bacterium SWAT-3]
gi|417949871|ref|ZP_12593001.1| peptide chain release factor 1 [Vibrio splendidus ATCC 33789]
gi|145960679|gb|EDK26023.1| peptide chain release factor 1 [Vibrionales bacterium SWAT-3]
gi|342807595|gb|EGU42781.1| peptide chain release factor 1 [Vibrio splendidus ATCC 33789]
Length = 362
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 223/324 (68%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q +++ + + E +D++M +MA EE+ A + +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQDDLEAAEDMAQE--DDEEMREMAQEEIKEAKEAIERLTD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+C LE+RAG GG+EA +FA ++F+MY ++++KKGW+ EV+ +S
Sbjct: 97 ELQILLLPKDPNDERNCFLEIRAGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNDS 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GVYG +KFESG HRVQRVP TE GRVHTSA +VA++P+ E D+
Sbjct: 157 EQGGYKEMIAKVSGEGVYGVMKFESGGHRVQRVPETESQGRVHTSACTVAVMPEIPEADL 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA+ VL
Sbjct: 217 PEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E R S R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + +++++E
Sbjct: 277 AARIVQAEEERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTLYRLNEVLE 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G ++ ID +L + + D +A+
Sbjct: 337 G-DMQSLIDPVLQEHQADQLAALA 359
>gi|401764069|ref|YP_006579076.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400175603|gb|AFP70452.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 360
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANDG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|424660682|ref|ZP_18097929.1| peptide chain release factor 1 [Vibrio cholerae HE-16]
gi|408050250|gb|EKG85420.1| peptide chain release factor 1 [Vibrio cholerae HE-16]
Length = 362
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 145/289 (50%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDADMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEVPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ ID ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIDPVIHEHQADQLAALA 359
>gi|404378163|ref|ZP_10983261.1| peptide chain release factor 1 [Simonsiella muelleri ATCC 29453]
gi|294484033|gb|EFG31716.1| peptide chain release factor 1 [Simonsiella muelleri ATCC 29453]
Length = 358
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 155/341 (45%), Positives = 229/341 (67%), Gaps = 8/341 (2%)
Query: 82 LVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PEA+ Y K N+E +L + + R + ++ + ++ D +M D
Sbjct: 22 LLGSPEATANMDNYRKLNQEHAELTPIVETYQQYRQAESDLADAQEML----SDPEMKDF 77
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ A + ++L L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY R
Sbjct: 78 AAEEIEHAKTQIEQLDFELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYSR 137
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
++++ W+ E+V +ESDL GYKE + G+G Y KLKFESG HRVQRVP TE GR+H
Sbjct: 138 FAERNRWQTEIVSASESDLGGYKEVIVRLIGLGAYSKLKFESGGHRVQRVPTTESQGRIH 197
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ +++L DLRIDT+R+ G+GGQH N T+SA+R+TH+PTGM +
Sbjct: 198 TSACTVAVMPEADELEEIQLNPNDLRIDTFRASGAGGQHINKTDSAIRITHLPTGMVVEC 257
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGRV
Sbjct: 258 QDGRSQHANKAQAMKVLAARLNDKQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRV 317
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
TDHR+ +T H + +M+G +++ AL+ + + + +A+ G
Sbjct: 318 TDHRINLTLHKLDFVMDG-DMEEITSALIAEHQAELLAAMG 357
>gi|345016594|ref|YP_004818947.1| hypothetical protein Thewi_0154 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344031937|gb|AEM77663.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_0154
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 356
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 242/356 (67%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + D + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVNEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S D+++ +MA EEL +++++L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSNDEELKEMAEEELSQLEEKKEKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D++ID +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPSDIKIDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ ++ QDERSQ N+ +ALK+L AKLYEM ++ R Q+G+G
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAETRKSQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+RSERIRTYNFPQGRVTDHR+G+T + + ++++G +LD IDAL+L + + + +
Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDG-DLDEIIDALILNDQAEKLKNM 353
>gi|289550267|ref|YP_003471171.1| peptide chain release factor 1 [Staphylococcus lugdunensis
HKU09-01]
gi|315660273|ref|ZP_07913128.1| peptide chain release factor RF1 [Staphylococcus lugdunensis
M23590]
gi|385783895|ref|YP_005760068.1| peptide chain release factor 1 [Staphylococcus lugdunensis N920143]
gi|418415218|ref|ZP_12988424.1| peptide chain release factor 1 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418636147|ref|ZP_13198499.1| peptide chain release factor 1 [Staphylococcus lugdunensis VCU139]
gi|289179799|gb|ADC87044.1| Peptide chain release factor 1 [Staphylococcus lugdunensis
HKU09-01]
gi|315494700|gb|EFU83040.1| peptide chain release factor RF1 [Staphylococcus lugdunensis
M23590]
gi|339894151|emb|CCB53415.1| peptide chain release factor 1 [Staphylococcus lugdunensis N920143]
gi|374841146|gb|EHS04625.1| peptide chain release factor 1 [Staphylococcus lugdunensis VCU139]
gi|410875225|gb|EKS23150.1| peptide chain release factor 1 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 358
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 237/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ + + K +KE +L+ ++ + E + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNEMLSDPDVVNNADKLRKYSKEQAELQKTVDVYREYKNKKEELSDIEDMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE D L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIEMLKEESSNLKDALPLLEEKLKFLLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G++ EVV TESD GYKE S +SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYTKYAEANGFRTEVVEATESDHGGYKEVSFQVSGAGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ I+ E+SQ N+ KALKVL A+LY+M+ + R +G+GDRSER+R
Sbjct: 247 IPTGV-IATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRSERVR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG+ LD IDAL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLDQIMEGK-LDEIIDALTLSEQTEKLKELNN 355
>gi|422110879|ref|ZP_16380738.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378429|emb|CBX22924.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 358
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDIDNYRKLTREHAELSPVVEVFQHYRRAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKHEAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|219685818|ref|ZP_03540627.1| peptide chain release factor 1 [Borrelia garinii Far04]
gi|219672651|gb|EED29681.1| peptide chain release factor 1 [Borrelia garinii Far04]
Length = 357
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 141/283 (49%), Positives = 206/283 (72%), Gaps = 1/283 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS++K WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSERKKWKTEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L ++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDQLLDPLTIE 346
>gi|442608870|ref|ZP_21023611.1| Peptide chain release factor 1 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441749482|emb|CCQ09673.1| Peptide chain release factor 1 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 361
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/344 (45%), Positives = 231/344 (67%), Gaps = 6/344 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
++ L++ PE + + +KE +L D + + + Q++I + ++ + D DM
Sbjct: 19 VQALLSDPEVIGDQNRFRELSKEYAELEDVVKAFAAYQQAQEDISTAEEMLKDS--DPDM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE A ++L L ++PKD D + LEVRAGTGG+EA++FA D+F+M
Sbjct: 77 REMAQEEYKEAKVRVEKLDGELQILMIPKDPRDNNNVFLEVRAGTGGDEAAIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY++ + WK EV+ E + G+KE A I+G GV+GKLKFESG HRVQRVP TE G
Sbjct: 137 YSRYAETQKWKVEVISCNEGEHGGFKEVIANITGEGVFGKLKFESGAHRVQRVPETESQG 196
Query: 257 RVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++P+ E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+
Sbjct: 197 RVHTSACTVAVMPELPEAEAIEINPADLKIDTFRASGAGGQHVNKTDSAIRITHLPTGVV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH N+AKAL VL A+L + E + + + R +GSGDRSERIRTYNFPQ
Sbjct: 257 VECQDERSQHKNRAKALSVLSARLQQAEDEKRAAAEASERRNLVGSGDRSERIRTYNFPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GR+TDHR+G+T + ++++MEG +L+ I LL++ + D +A+ G
Sbjct: 317 GRLTDHRIGLTLYRLNEVMEG-DLNCVISPLLVEHQADMLAAMG 359
>gi|320160374|ref|YP_004173598.1| peptide chain release factor 1 [Anaerolinea thermophila UNI-1]
gi|319994227|dbj|BAJ62998.1| peptide chain release factor 1 [Anaerolinea thermophila UNI-1]
Length = 357
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 153/353 (43%), Positives = 237/353 (67%), Gaps = 3/353 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
M ++++AIE R L L+ + + + +KE L + E RT K+I+ +
Sbjct: 1 MLEKLIAIESRFEELNRLLEENAGDYQKVIELSKERADLEPIVEKAQEYRTVLKQIEEAR 60
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
+L+ S D+++ ++A +L ++ L+ L L+PKD DER+ I+E+RAGTGGE
Sbjct: 61 TLLE--SGDEELRELAEADLETLEPRQEVLEKELKTLLIPKDPRDERNVIVEIRAGTGGE 118
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F+MY RY++K+GW E++ E+ + GYKE + G G Y +LK+ESG+H
Sbjct: 119 EAALFAGDLFRMYSRYAEKRGWSVEIISQNETGIGGYKEIIFMVKGKGAYSRLKYESGVH 178
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQR+P+TE SGR+HTS +VA+L + DEVD+ + + DL I+ YRS G+GGQ+ ++A
Sbjct: 179 RVQRIPVTESSGRIHTSTATVAVLAEVDEVDINIPDSDLEIEVYRSAGAGGQNVQKNSTA 238
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+TH+PTG+ ++ QDERSQ NK +A+ +L AKLYE+E + R Q+G+G+R
Sbjct: 239 VRITHLPTGIVVACQDERSQLQNKLRAMSILRAKLYEIEEQKRQQELDATRRSQVGTGER 298
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+E+IRTYNFPQ RVTDHR+GI+ + + +++GE +D+FID L L+ E + +A+
Sbjct: 299 AEKIRTYNFPQSRVTDHRIGISSYNLPAVLDGE-IDLFIDELALRSETERLAT 350
>gi|429335284|ref|ZP_19215921.1| peptide chain release factor 1 [Pseudomonas putida CSV86]
gi|428760086|gb|EKX82363.1| peptide chain release factor 1 [Pseudomonas putida CSV86]
Length = 360
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 220/309 (71%), Gaps = 4/309 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
+ R Q +++G ++L+ + D D+ +MA EE+ A ++ + L+ L + LLPKD D R
Sbjct: 54 QWRKLQDDLEGAQALLKDS--DPDLREMAIEEVREAKEQLQALEDQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DTYR+
Sbjct: 172 AVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLS 350
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S +
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA 291
Query: 351 RSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 410
+ R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ +++ G +D I+ LL +
Sbjct: 292 MASERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDEVLAG-GVDAVIEPLLAEY 350
Query: 411 EMDAIASFG 419
+ D +A+ G
Sbjct: 351 QADQLAALG 359
>gi|288819151|ref|YP_003433499.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|384129898|ref|YP_005512511.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|288788551|dbj|BAI70298.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|308752735|gb|ADO46218.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
Length = 357
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 244/351 (69%), Gaps = 8/351 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
+E+++ AIE+R ++N ++ + A+++K +K+L+ + + + L + QK+I
Sbjct: 6 LEEKLEAIEKRYEEIQNRLSSQDVIRDRAQFAKLSKDLKDIGEVVDLYRRYKKVQKDIKE 65
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + ++ ++A EE+ EE+R++ L +LPKD+ D R+ ILE+RAG G
Sbjct: 66 AQELL----KSREFEELAKEEIKRLKREEERIEKELKILMLPKDERDSRNVILEIRAGVG 121
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LF D+ MY++Y++++GWKF ++ + L GYKE A I GVG Y +LK+ESG
Sbjct: 122 GEEAALFVADLLNMYQKYAEERGWKFSILSANRTGLGGYKEVIALIEGVGAYSRLKYESG 181
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+ DE ++ + +DL+I+T+R+ G+GGQ+ NTT
Sbjct: 182 VHRVQRIPRTESGGRIHTSTATVAVLPEVDETELEINPQDLKIETFRASGAGGQYVNTTE 241
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
+AVRVTHIPTG++++ QDERSQ NK KALK+L A+L + + +K R Q+G+G
Sbjct: 242 TAVRVTHIPTGISVACQDERSQFQNKQKALKILYARLKDFYERQKEEEIAKERKMQVGTG 301
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMD 413
+RSE+IRTYNFPQGRVTDHR+ +T + + D++EG LD I+A L+Q ++D
Sbjct: 302 ERSEKIRTYNFPQGRVTDHRINLTLYKLHDVLEG-KLDEIIEA-LIQHDID 350
>gi|59801687|ref|YP_208399.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA 1090]
gi|240017030|ref|ZP_04723570.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA6140]
gi|268604103|ref|ZP_06138270.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID1]
gi|75432438|sp|Q5F750.1|RF1_NEIG1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|59718582|gb|AAW89987.1| putative peptide chain release factor I [Neisseria gonorrhoeae FA
1090]
gi|268588234|gb|EEZ52910.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID1]
Length = 358
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLR DT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRTDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREVQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|449473633|ref|XP_004153936.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus]
Length = 360
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 224/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAELRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|116625721|ref|YP_827877.1| peptide chain release factor 1 [Candidatus Solibacter usitatus
Ellin6076]
gi|122252101|sp|Q01RX8.1|RF1_SOLUE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|116228883|gb|ABJ87592.1| bacterial peptide chain release factor 1 (bRF-1) [Candidatus
Solibacter usitatus Ellin6076]
Length = 362
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 161/331 (48%), Positives = 231/331 (69%), Gaps = 11/331 (3%)
Query: 83 VNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI----DGL---KSLIYECSEDKD 135
+ Q A PA S A+ + RK+ + +S++ K +E DGL + ++ E +D +
Sbjct: 17 LTQQMADPAVISDAD-QYRKVAKAQSELSDIAAKYREWKKVEDGLAQARPMLQE--QDAE 73
Query: 136 MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFK 195
+ +MA E+ E+ R++ L LLPKD D+++ +LE+RAGTGG+EA+LFA ++F+
Sbjct: 74 LKEMAELEIAQLEPEKLRIEEELRVLLLPKDPNDDKNVVLEIRAGTGGDEATLFAAEIFR 133
Query: 196 MYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKS 255
MY RY++ + WK EV +ES + G KE A +SG VY KLK+ESG+HRVQRVP+TE+
Sbjct: 134 MYSRYAETQNWKMEVTSSSESSVGGLKEVIALVSGNKVYAKLKYESGVHRVQRVPVTEQQ 193
Query: 256 GRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
GRVHTSA++VA+LP+ADEV+V+L +D+RIDT+ S G GGQ NTT SAVR+TH+PTG+
Sbjct: 194 GRVHTSAITVAVLPEADEVEVKLEAKDIRIDTFCSSGPGGQSVNTTYSAVRITHLPTGLV 253
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+S QDE+SQ N+AKA +VL ++LYE+E + + R +GSGDRSE+IRTYNFPQ
Sbjct: 254 VSCQDEKSQIKNRAKAERVLRSRLYELELEKQQAALGAERRTMVGSGDRSEKIRTYNFPQ 313
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
RV+DHR+G+T H + +MEG +D +DAL
Sbjct: 314 NRVSDHRIGLTLHQLDFVMEG-KMDAIVDAL 343
>gi|417821512|ref|ZP_12468126.1| peptide chain release factor 1 [Vibrio cholerae HE39]
gi|422911020|ref|ZP_16945648.1| peptide chain release factor 1 [Vibrio cholerae HE-09]
gi|423956678|ref|ZP_17735232.1| peptide chain release factor 1 [Vibrio cholerae HE-40]
gi|423985466|ref|ZP_17738783.1| peptide chain release factor 1 [Vibrio cholerae HE-46]
gi|340039143|gb|EGR00118.1| peptide chain release factor 1 [Vibrio cholerae HE39]
gi|341632662|gb|EGS57522.1| peptide chain release factor 1 [Vibrio cholerae HE-09]
gi|408657222|gb|EKL28309.1| peptide chain release factor 1 [Vibrio cholerae HE-40]
gi|408663808|gb|EKL34658.1| peptide chain release factor 1 [Vibrio cholerae HE-46]
Length = 362
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 145/289 (50%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDADMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ ID ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIDPVIHEHQADQLAALA 359
>gi|117621299|ref|YP_857649.1| peptide chain release factor 1 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|166223525|sp|A0KMZ8.1|RF1_AERHH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|117562706|gb|ABK39654.1| peptide chain release factor 1 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 362
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/346 (42%), Positives = 229/346 (66%), Gaps = 6/346 (1%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
++ ++ +P+ + + Y +E +L D +H + R ++ +D + ++ E +D D+
Sbjct: 19 VQAMLGEPDVAADQDRYRALTREYAQLEDIVHAFQQFRQAEENLDATRQMLEE--DDADL 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EEL LA + + L LLP+D D+ +C LE+RAG GG+EA++FA D+F+M
Sbjct: 77 REMAQEELPLAKATFEEQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY++++GW+ +V + + GYKE A + G VYG+LKFESG HRVQRVP TE G
Sbjct: 137 YSRYAERQGWRVSIVSCNDGEHGGYKEVIAKVEGEHVYGRLKFESGGHRVQRVPETESQG 196
Query: 257 RVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA+LP+ E + + + +L+IDT+R+ G+GGQH N T+SA+R+TH+PTG+
Sbjct: 197 RVHTSACTVAVLPEVPEAEQIEINPSELKIDTFRASGAGGQHVNKTDSAIRITHLPTGLV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH N+AKA+ VL A+L E R + R +GSGDRSERIRTYN+PQ
Sbjct: 257 VECQDERSQHKNRAKAMSVLSARLQAAEDERHRAAEQSTRRNLVGSGDRSERIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
GR+++HR+ +T + + ++MEG +LD I ++ + + D +AS +
Sbjct: 317 GRLSEHRINLTLYRLGEIMEG-DLDCVISPMIQEYQADQLASLAES 361
>gi|224534432|ref|ZP_03675010.1| peptide chain release factor 1 [Borrelia spielmanii A14S]
gi|224514534|gb|EEF84850.1| peptide chain release factor 1 [Borrelia spielmanii A14S]
Length = 357
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 142/291 (48%), Positives = 209/291 (71%), Gaps = 1/291 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ ++ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKKEEVEHEIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS+KK WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYGMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSNNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L ++ + + S
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDPLLDPLTIELQEQTLKS 354
>gi|389873756|ref|YP_006381175.1| peptide chain release factor 1 [Advenella kashmirensis WT001]
gi|388539005|gb|AFK64193.1| peptide chain release factor 1 [Advenella kashmirensis WT001]
Length = 361
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 153/292 (52%), Positives = 213/292 (72%), Gaps = 2/292 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+ S D ++ +MA EEL LA + LQ L LLP+D D R LEVRAGTGG+E+++
Sbjct: 67 DMSSDPELREMAEEELKLAKARLEELQEQLQVQLLPRDPDDGRSVFLEVRAGTGGDESAI 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F+ D+F+MY RY+++KGWK EV+ ES++ GY+E A + G GVYG+LK+ESG HRVQR
Sbjct: 127 FSGDLFRMYSRYAEQKGWKVEVISENESEMGGYREVIARVDGDGVYGRLKYESGAHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GRVHTSA +VA+LP+ADE+ +V L DLRIDT+R+ G+GGQH N T+SAVR+
Sbjct: 187 VPETESQGRVHTSACTVAVLPEADEIAEVALNPADLRIDTFRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG+ QD+RSQH NKA+A+ VL A++ ++ER + + R +G+GDRSER
Sbjct: 247 THIPTGIVAECQDDRSQHKNKARAMSVLAARINDIERQKQQQKEAAERKSLVGTGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYN+PQGRVTDHR+ +T + ++ +MEG +LD AL+ +++ + +A+ G
Sbjct: 307 IRTYNYPQGRVTDHRINLTLYKLAQIMEG-SLDELTGALIAERQAELLAALG 357
>gi|254476963|ref|ZP_05090349.1| peptide chain release factor 1 [Ruegeria sp. R11]
gi|214031206|gb|EEB72041.1| peptide chain release factor 1 [Ruegeria sp. R11]
Length = 351
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/318 (49%), Positives = 223/318 (70%), Gaps = 14/318 (4%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELC---LAIDEEKRLQSLLLKS 161
S+LR ++I + L+ + E D DM +A EEL A+ E + Q+L L +
Sbjct: 38 SDLRPVAEQIISYRRLLADLDEAEQMLADPDMAALAEEELPGLRAALPEAE--QALQL-A 94
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLP+D AD + +LE+R GTGG+EA+LFA D+ +MY+RY++ +GW FE++ ++L G
Sbjct: 95 LLPRDAADSKPAMLEIRPGTGGDEAALFAGDLLRMYQRYAEAQGWTFEIIEEQSTELGGL 154
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE A + G V+ +LK+ESG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVD+R+
Sbjct: 155 KEVVAHVKGNNVFARLKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDLRIDPA 214
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
DLRIDT R+ G+GGQH NTT+SAVR+THIPTG+ I + E+SQH N+ A++VL +LY+
Sbjct: 215 DLRIDTMRASGAGGQHVNTTDSAVRITHIPTGI-IVVSSEKSQHRNREIAMQVLRTRLYD 273
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
+ER RI RS R+ Q+GSGDRSERIRTYNFPQGR++DHR+ +T + + +M+G +LD
Sbjct: 274 LERQRIDSERSADRASQVGSGDRSERIRTYNFPQGRMSDHRINLTLYKLDQIMQG-DLDE 332
Query: 402 FIDALLLQQEMDAIASFG 419
IDAL + +A G
Sbjct: 333 IIDALTADDQARRLAEMG 350
>gi|452747687|ref|ZP_21947480.1| peptide chain release factor 1 [Pseudomonas stutzeri NF13]
gi|452008431|gb|EME00671.1| peptide chain release factor 1 [Pseudomonas stutzeri NF13]
Length = 360
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 151/304 (49%), Positives = 219/304 (72%), Gaps = 4/304 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q++++G ++L+ + D DM +MA EE+ A + + L++ L + LLPKD D R+ LE
Sbjct: 59 QQDLEGAQALLKDS--DPDMREMAEEEVTEAKTQLETLEANLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++FA D+F+MY RY++K+GW+ E++ +E + GYKE + + G VY K
Sbjct: 117 IRAGTGGDEAAIFAGDLFRMYSRYAEKQGWRVEILSESEGEHGGYKEVISRVEGDNVYAK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + +LR+DTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAVEINPAELRVDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH N T+SA+R+TH+PTGM + Q+ERSQH N+AKA+ L AKL + + + H S+ R
Sbjct: 237 QHVNKTDSAIRITHLPTGMVVECQEERSQHKNRAKAMAWLAAKLQDRQDAAAHKEISETR 296
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+GSGDRSERIRTYNFPQGRVTDHRV +T +++++++ G ++ I+ LL + + D +
Sbjct: 297 KLLVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLNEVI-GGAVEQVIEPLLQEYQADQL 355
Query: 416 ASFG 419
A+ G
Sbjct: 356 AALG 359
>gi|238788553|ref|ZP_04632346.1| Peptide chain release factor 1 [Yersinia frederiksenii ATCC 33641]
gi|238723466|gb|EEQ15113.1| Peptide chain release factor 1 [Yersinia frederiksenii ATCC 33641]
Length = 360
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/323 (48%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q ++D + ++ ED +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDLDAAEMML----EDPEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQLLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAEASERRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I ++ + + D +++
Sbjct: 335 GK-LDMLIQPIVQEYQADQLSAL 356
>gi|161870534|ref|YP_001599706.1| peptide chain release factor 1 [Neisseria meningitidis 053442]
gi|189039981|sp|A9M1Q8.1|RF1_NEIM0 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|161596087|gb|ABX73747.1| peptide chain release factor I [Neisseria meningitidis 053442]
Length = 358
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|225552361|ref|ZP_03773301.1| peptide chain release factor 1 [Borrelia sp. SV1]
gi|225371359|gb|EEH00789.1| peptide chain release factor 1 [Borrelia sp. SV1]
Length = 357
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 141/282 (50%), Positives = 206/282 (73%), Gaps = 1/282 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS+KK WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
RIRTYNFPQ R+TDHR IT + + + ++GE LD +D L++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFIQGE-LDPLLDPLMI 345
>gi|339327370|ref|YP_004687063.1| peptide chain release factor 1 [Cupriavidus necator N-1]
gi|338167527|gb|AEI78582.1| peptide chain release factor 1 [Cupriavidus necator N-1]
Length = 360
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 154/329 (46%), Positives = 225/329 (68%), Gaps = 6/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L + R Q ++ ++L+ +D +M D A +E+ A
Sbjct: 34 QYRKLSREHAELSPVAEQYGQYRQAQDDLATAQALL----DDPEMKDFAADEIASARARL 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ L + LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ EV+
Sbjct: 90 EALEASLQRLLLPKDPNDDRNLLLEIRAGTGGEESALFAGDLLRMYTRYAERQRWQVEVM 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ESDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 150 SESESDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEA 209
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DEV +V + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH NK K
Sbjct: 210 DEVGEVEINPADLRIDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKDK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+KVL A++ +M+ + R IGSGDRS+RIRTYNFPQGRVTDHR+ +T + I
Sbjct: 270 AMKVLAARIKDMQTRAAQAKEASTRRNLIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKI 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+M+G ++D + AL + + D +A+ G
Sbjct: 330 DMIMDG-DMDELLSALASEHQADQLAALG 357
>gi|255993956|ref|ZP_05427091.1| peptide chain release factor 1 [Eubacterium saphenum ATCC 49989]
gi|255993624|gb|EEU03713.1| peptide chain release factor 1 [Eubacterium saphenum ATCC 49989]
Length = 357
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/343 (45%), Positives = 224/343 (65%), Gaps = 3/343 (0%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
LE V++PE + + K KE+ + + S + ++E+ K L+ D++M
Sbjct: 15 LEAAVSKPEIIGNQPLWQKYIKEMSDMEPIVKTYSSFKKHKQELSDAKELLAGAGGDEEM 74
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
D+A E+ DE + + L L+PKD DE++ ILE+RAGTGGEEA+LF D+ +M
Sbjct: 75 KDLAKLEISGLEDEINKEEEQLKILLIPKDPRDEKNVILEIRAGTGGEEAALFGSDLLRM 134
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y Y+ K WK E++ + E+ L G KEA I G G + +LK+ESG+HRVQRVP TE SG
Sbjct: 135 YSMYADSKNWKTEIIELNETGLNGIKEAVMLIKGKGAFSRLKYESGVHRVQRVPTTESSG 194
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
RVHTSA +VA+LP+ D+V+V L D+R+D YRS G+GGQ NTT+SAVR+TH PTG+ +
Sbjct: 195 RVHTSAATVAVLPEMDDVEVDLNPNDVRVDVYRSSGNGGQSVNTTDSAVRLTHEPTGIVV 254
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
+ QDE+SQ NK KA KVL ++LY ++ + S R Q+GSGDRSERIRTYNFPQG
Sbjct: 255 TCQDEKSQIKNKDKAFKVLKSRLYNLKMEEQNKQLSDERKSQVGSGDRSERIRTYNFPQG 314
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RV+DHR+G+T + + + M G ++D I+ L+ + ++ FG
Sbjct: 315 RVSDHRIGLTIYKLDNFMNG-DIDEVIEGLITADQAAKMSKFG 356
>gi|51598456|ref|YP_072644.1| peptide chain release factor 1 [Borrelia garinii PBi]
gi|61214604|sp|Q662G9.1|RF1_BORGA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|51573027|gb|AAU07052.1| peptide chain release factor 1 [Borrelia garinii PBi]
Length = 357
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 141/283 (49%), Positives = 206/283 (72%), Gaps = 1/283 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS++K WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSERKKWKTEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L ++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDPLLDPLTIE 346
>gi|386749203|ref|YP_006222410.1| peptide chain release factor 1 [Helicobacter cetorum MIT 00-7128]
gi|384555446|gb|AFI03780.1| peptide chain release factor 1 [Helicobacter cetorum MIT 00-7128]
Length = 352
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L+S + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEVKKGELESTIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DLRI+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLRIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HIPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLTNAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|15677534|ref|NP_274690.1| peptide chain release factor 1 [Neisseria meningitidis MC58]
gi|385850774|ref|YP_005897289.1| peptide chain release factor 1 [Neisseria meningitidis M04-240196]
gi|385852716|ref|YP_005899230.1| peptide chain release factor 1 [Neisseria meningitidis H44/76]
gi|416182173|ref|ZP_11611923.1| peptide chain release factor 1 [Neisseria meningitidis M13399]
gi|433465662|ref|ZP_20423135.1| peptide chain release factor 1 [Neisseria meningitidis NM422]
gi|433488865|ref|ZP_20446018.1| peptide chain release factor 1 [Neisseria meningitidis M13255]
gi|433491049|ref|ZP_20448165.1| peptide chain release factor 1 [Neisseria meningitidis NM418]
gi|433505594|ref|ZP_20462528.1| peptide chain release factor 1 [Neisseria meningitidis 9506]
gi|433507677|ref|ZP_20464579.1| peptide chain release factor 1 [Neisseria meningitidis 9757]
gi|433509844|ref|ZP_20466704.1| peptide chain release factor 1 [Neisseria meningitidis 12888]
gi|433511878|ref|ZP_20468695.1| peptide chain release factor 1 [Neisseria meningitidis 4119]
gi|20139351|sp|Q9JY93.1|RF1_NEIMB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|7226940|gb|AAF42034.1| peptide chain release factor 1 [Neisseria meningitidis MC58]
gi|325134780|gb|EGC57417.1| peptide chain release factor 1 [Neisseria meningitidis M13399]
gi|325199720|gb|ADY95175.1| peptide chain release factor 1 [Neisseria meningitidis H44/76]
gi|325205597|gb|ADZ01050.1| peptide chain release factor 1 [Neisseria meningitidis M04-240196]
gi|432201307|gb|ELK57389.1| peptide chain release factor 1 [Neisseria meningitidis NM422]
gi|432221940|gb|ELK77742.1| peptide chain release factor 1 [Neisseria meningitidis M13255]
gi|432225995|gb|ELK81729.1| peptide chain release factor 1 [Neisseria meningitidis NM418]
gi|432239749|gb|ELK95296.1| peptide chain release factor 1 [Neisseria meningitidis 9506]
gi|432240115|gb|ELK95658.1| peptide chain release factor 1 [Neisseria meningitidis 9757]
gi|432245146|gb|ELL00618.1| peptide chain release factor 1 [Neisseria meningitidis 12888]
gi|432245905|gb|ELL01368.1| peptide chain release factor 1 [Neisseria meningitidis 4119]
Length = 358
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|421551349|ref|ZP_15997343.1| peptide chain release factor 1 [Neisseria meningitidis 69166]
gi|421561718|ref|ZP_16007556.1| peptide chain release factor 1 [Neisseria meningitidis NM2657]
gi|433471985|ref|ZP_20429364.1| peptide chain release factor 1 [Neisseria meningitidis 68094]
gi|433478196|ref|ZP_20435510.1| peptide chain release factor 1 [Neisseria meningitidis 70012]
gi|433526720|ref|ZP_20483344.1| peptide chain release factor 1 [Neisseria meningitidis 69096]
gi|433539490|ref|ZP_20495959.1| peptide chain release factor 1 [Neisseria meningitidis 70030]
gi|402327938|gb|EJU63321.1| peptide chain release factor 1 [Neisseria meningitidis 69166]
gi|402336745|gb|EJU72003.1| peptide chain release factor 1 [Neisseria meningitidis NM2657]
gi|432206910|gb|ELK62908.1| peptide chain release factor 1 [Neisseria meningitidis 68094]
gi|432213969|gb|ELK69878.1| peptide chain release factor 1 [Neisseria meningitidis 70012]
gi|432259238|gb|ELL14511.1| peptide chain release factor 1 [Neisseria meningitidis 69096]
gi|432271877|gb|ELL26995.1| peptide chain release factor 1 [Neisseria meningitidis 70030]
Length = 358
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|238022362|ref|ZP_04602788.1| hypothetical protein GCWU000324_02269 [Kingella oralis ATCC 51147]
gi|237866976|gb|EEP68018.1| hypothetical protein GCWU000324_02269 [Kingella oralis ATCC 51147]
Length = 358
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 231/344 (67%), Gaps = 14/344 (4%)
Query: 82 LVNQPEASPA--EYSKANKE---LRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
L+ PEA+ Y + N+E L + D+ H ++ ++ + + S D +M
Sbjct: 22 LLGSPEATANMDSYRRLNQEHAELTPIVDTYHAYTQAQSDLADAQEMLS-------DPEM 74
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
D A EE+ A D +RL L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +M
Sbjct: 75 KDFAFEEIQAAKDTIERLDLELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRM 134
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY+++ W+ E+V +ESDL GYKE + G+G Y KLKFESG HRVQRVP TE G
Sbjct: 135 YTRYAERNRWQTEIVSASESDLGGYKEVIVRLVGLGAYSKLKFESGGHRVQRVPATESQG 194
Query: 257 RVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
R+HTSA +VA++P+ADE+ + L ++DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+
Sbjct: 195 RIHTSACTVAVMPEADELAKIELNDKDLRIDTFRASGAGGQHINKTDSAVRITHLPTGLV 254
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QD RSQH NK KALKVL A+L ++++ H + R IGSGDRSERIRTYN+PQ
Sbjct: 255 VECQDGRSQHTNKEKALKVLAARLNDIQKREAHAKEAAERKSLIGSGDRSERIRTYNYPQ 314
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GRVTDHR+ +T H + +M+G ++D AL+ + + + +A+ G
Sbjct: 315 GRVTDHRINLTLHKLDFVMDG-DMDEITSALIAEHQAELLAAMG 357
>gi|326389251|ref|ZP_08210819.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus JW
200]
gi|325994614|gb|EGD53038.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus JW
200]
Length = 356
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 242/356 (67%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + D + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVNEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S D+++ +MA EEL +++++L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSNDEELKEMAEEELSQLEEKKEKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D+++D +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKVDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ ++ QDERSQ N+ +ALK+L AKLYEM ++ R Q+G+G
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAETRKSQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+RSERIRTYNFPQGRVTDHR+G+T + + ++++G +LD IDAL+L + + + +
Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDG-DLDEIIDALILNDQAEKLKNM 353
>gi|186477469|ref|YP_001858939.1| peptide chain release factor 1 [Burkholderia phymatum STM815]
gi|238691299|sp|B2JHK8.1|RF1_BURP8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|184193928|gb|ACC71893.1| peptide chain release factor 1 [Burkholderia phymatum STM815]
Length = 360
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/292 (52%), Positives = 207/292 (70%), Gaps = 2/292 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ + + + L+S L K LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 67 ELLSDASMKDFAEEEIRASRERMETLESELQKMLLPKDPNDDRNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 247 THLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGR+TDHR+ +T + + +MEG +LD I AL+ + + + +AS G
Sbjct: 307 IRTYNFPQGRLTDHRINLTLYRLESIMEG-DLDELIAALVSEHQAELLASLG 357
>gi|163784022|ref|ZP_02178981.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880707|gb|EDP74252.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
Length = 359
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 163/345 (47%), Positives = 244/345 (70%), Gaps = 11/345 (3%)
Query: 79 LENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+E + PE + P + + KE + L + L + +K I K L++ S+D++M
Sbjct: 19 VEEKLASPEVANNPKQLQELAKEHKHLAYVVELFNRYENIEKSIKETKELLH--SQDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A EEL ++++L+S + +L+PKD D+++ ILE+R G GG+EA+LFA ++F+M
Sbjct: 77 RLLAEEELENLKSQKEKLESEIQIALIPKDPNDDKNVILEIRQGAGGDEAALFAAELFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y+RY++K GWK E++ + E++ G KE A I G G Y KLK+ESG+HRVQRVP TE SG
Sbjct: 137 YQRYAEKNGWKVEILSLHENERGGIKEVIALIKGEGAYSKLKYESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTS +VA+LP+A+EVDV + +DL+I+T R+ G+GGQH NTT+SAVR+THIPTG+ +
Sbjct: 197 RIHTSTATVAVLPEAEEVDVEINPDDLKIETMRASGAGGQHVNTTDSAVRITHIPTGIVV 256
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE---QIGSGDRSERIRTYNF 373
S QDERSQ N+AKA+++L A+L + RI + K++SE Q+G+GDRSE+IRTYNF
Sbjct: 257 SCQDERSQLQNRAKAMQILRARLKDY-YDRIQ--QEKIKSERKSQVGTGDRSEKIRTYNF 313
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
PQ RVTDHR+G T H I+++++GE LD ID L+L+ + + ++S
Sbjct: 314 PQNRVTDHRIGYTSHRINEILDGE-LDEIIDQLILKDQEEKLSSL 357
>gi|423108930|ref|ZP_17096625.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5243]
gi|423114890|ref|ZP_17102581.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5245]
gi|376383124|gb|EHS95852.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5243]
gi|376383765|gb|EHS96492.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5245]
Length = 360
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A ++ ++++
Sbjct: 39 SREYAQLSDVARCYTDWRQLQDDIEAAQMML----DDPEMREMAQEELREAKEKGEQMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E SR + + R +GSGDRS+R RTYN+PQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIRAAEVSRRQQAEASERRNLLGSGDRSDRNRTYNYPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|416160021|ref|ZP_11606067.1| peptide chain release factor 1 [Neisseria meningitidis N1568]
gi|433474031|ref|ZP_20431389.1| peptide chain release factor 1 [Neisseria meningitidis 97021]
gi|433482533|ref|ZP_20439790.1| peptide chain release factor 1 [Neisseria meningitidis 2006087]
gi|433484459|ref|ZP_20441681.1| peptide chain release factor 1 [Neisseria meningitidis 2002038]
gi|433486832|ref|ZP_20444022.1| peptide chain release factor 1 [Neisseria meningitidis 97014]
gi|325128768|gb|EGC51631.1| peptide chain release factor 1 [Neisseria meningitidis N1568]
gi|432208563|gb|ELK64540.1| peptide chain release factor 1 [Neisseria meningitidis 97021]
gi|432214958|gb|ELK70850.1| peptide chain release factor 1 [Neisseria meningitidis 2006087]
gi|432219951|gb|ELK75780.1| peptide chain release factor 1 [Neisseria meningitidis 2002038]
gi|432220645|gb|ELK76463.1| peptide chain release factor 1 [Neisseria meningitidis 97014]
Length = 358
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELSPVVEVFQHYRRAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|392963311|ref|ZP_10328737.1| Peptide chain release factor 1 [Pelosinus fermentans DSM 17108]
gi|421056869|ref|ZP_15519786.1| peptide chain release factor 1 [Pelosinus fermentans B4]
gi|421060491|ref|ZP_15522960.1| Peptide chain release factor 1 [Pelosinus fermentans B3]
gi|421066915|ref|ZP_15528456.1| Peptide chain release factor 1 [Pelosinus fermentans A12]
gi|421069310|ref|ZP_15530482.1| Peptide chain release factor 1 [Pelosinus fermentans A11]
gi|392438049|gb|EIW15911.1| peptide chain release factor 1 [Pelosinus fermentans B4]
gi|392450330|gb|EIW27383.1| Peptide chain release factor 1 [Pelosinus fermentans A11]
gi|392451135|gb|EIW28129.1| Peptide chain release factor 1 [Pelosinus fermentans DSM 17108]
gi|392452501|gb|EIW29441.1| Peptide chain release factor 1 [Pelosinus fermentans A12]
gi|392456829|gb|EIW33563.1| Peptide chain release factor 1 [Pelosinus fermentans B3]
Length = 355
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 169/348 (48%), Positives = 226/348 (64%), Gaps = 10/348 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEI-D 121
M ++ AIE R LENL++ P A+ AE+ K K KL + E + Q+ I D
Sbjct: 1 MLDKLQAIEDRQLELENLISDPSVIANMAEWQKHTKAHSKLLPIVAKFREYKEVQQGIAD 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ L + D D M T EL + L L LLPKD DE+ I+E+R G
Sbjct: 61 ALEMLNDKL--DNDFRQMVTAELSDLKARNEVLNEELRILLLPKDPNDEKSVIVEIRGGA 118
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MY RY++ +GW+ E++ DL G+KE I G G Y +LKFES
Sbjct: 119 GGDEAALFAGDLFRMYTRYAETQGWRTELLDANAPDLGGFKEVVFTIDGDGAYSRLKFES 178
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTS V+VA+LP+A+EVDV + DLRIDTY + G+GGQH N T
Sbjct: 179 GVHRVQRVPTTESGGRIHTSTVTVAVLPEAEEVDVVINQNDLRIDTYCASGAGGQHVNKT 238
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM--ERSRIHLSRSKLRSEQI 359
SAVR+ H+PTG+ + QDE+SQ NK KA++VL AK+ E E SR L+ + R Q+
Sbjct: 239 ESAVRIVHLPTGIVVQCQDEKSQLKNKDKAMRVLRAKVLEKAEEESRAELAET--RKSQV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
G+GDRSERIRTYNFPQGRVTDHR+G+T H + ++ G ++D I+AL+
Sbjct: 297 GTGDRSERIRTYNFPQGRVTDHRIGLTLHKLDFVLNG-DIDEIINALI 343
>gi|423120771|ref|ZP_17108455.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5246]
gi|376395401|gb|EHT08047.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5246]
Length = 360
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D +E R Q +I+ + ++ +D +M +MA EEL A + + ++
Sbjct: 39 SREYAQLSDVARCYTEWRQVQDDIETAQMML----DDAEMREMAQEELRDAKAKSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 214
Query: 277 RLRNE-DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
N DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPGDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIRAAEIAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|387827112|ref|YP_005806394.1| peptide chain release factor 1 [Borrelia burgdorferi N40]
gi|312148979|gb|ADQ29050.1| peptide chain release factor 1 [Borrelia burgdorferi N40]
Length = 357
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 141/282 (50%), Positives = 206/282 (73%), Gaps = 1/282 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS+KK WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQ+ NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQYKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDPLLDPLMI 345
>gi|330445230|ref|ZP_08308882.1| peptide chain release factor 1 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489421|dbj|GAA03379.1| peptide chain release factor 1 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 362
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 145/289 (50%), Positives = 207/289 (71%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA EE+ A E +RL L LLPKD D+R+C +E+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQEEIKEAKAEIERLADELQVLLLPKDPNDDRNCFVEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++++GW+ EV+ ++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSKYAERRGWRVEVISENRAEQGGYKEMIAKVNGDGAYGILKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VA+LP+ E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAVLPEVPEAEIPEINTGDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E + H + R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRHAEEASTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG +LD I +L + + D +A+
Sbjct: 312 YNYPQGRVSDHRITLTLYRLNEVMEG-DLDALIQPVLQEHQADQLAAMA 359
>gi|421724824|ref|ZP_16164031.1| peptide chain release factor 1 [Klebsiella oxytoca M5al]
gi|410374393|gb|EKP29067.1| peptide chain release factor 1 [Klebsiella oxytoca M5al]
Length = 360
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A ++ ++++
Sbjct: 39 SREYAQLSDVARCYTDWRQLQDDIEAAQMML----DDPEMREMAQEELREAKEKGEQMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDISPSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E SR + + R +GSGDRS+R RTYN+PQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIRAAEVSRRQQAEASERRNLLGSGDRSDRNRTYNYPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|254451602|ref|ZP_05065039.1| peptide chain release factor 1 [Octadecabacter arcticus 238]
gi|198266008|gb|EDY90278.1| peptide chain release factor 1 [Octadecabacter arcticus 238]
Length = 344
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 230/328 (70%), Gaps = 6/328 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +LR + ++ + EI+G ++++ D +M ++A EL +
Sbjct: 23 FVAVSREYAELRPVVEVVRTYQDLTAEIEGAEAML----SDPEMKELAEMELPQLRQQLP 78
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ + +L+PKD AD + +LE+R GTGG+EA+LFA D+ +MY+RY++ +GW FE++
Sbjct: 79 AAEAAVKLALIPKDAADGKPALLEIRPGTGGDEAALFAADLLRMYQRYAENRGWTFEILE 138
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++S+L G KE +A I+G V+ ++K+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 139 ESQSELGGIKEVTARIAGNNVFARMKYESGVHRVQRVPETESGGRIHTSAATVAVLPEAE 198
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VD+++ D+RIDT R+ GSGGQH NTT+SAVR+TH+P+G+ ++ E+SQH N+ A+
Sbjct: 199 DVDIQINANDIRIDTMRASGSGGQHVNTTDSAVRITHMPSGIVVT-SSEKSQHRNREIAM 257
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL +LY+ ER ++H RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 258 QVLKTRLYDAERQKVHDERSADRAAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDA 317
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFGS 420
+++G +LD ID L+ + A+A G
Sbjct: 318 VLQG-DLDEVIDGLIQDAQASALAEMGG 344
>gi|254876395|ref|ZP_05249105.1| peptide chain release factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842416|gb|EET20830.1| peptide chain release factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 361
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 214/298 (71%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL A + +RL+ L LLP+D D+ + LE+RAGT
Sbjct: 62 KEAAYEMLNEKDAELVEMAKEELKSANESIERLEDELQILLLPRDPNDDANIFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EVV +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVVSASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKNLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLILEHQADLLATM 358
>gi|167627296|ref|YP_001677796.1| peptide chain release factor 1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189039973|sp|B0TX37.1|RF1_FRAP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|167597297|gb|ABZ87295.1| peptide chain release factor 1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 361
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 214/298 (71%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL A + +RL+ L LLP+D D+ + LE+RAGT
Sbjct: 62 KEAAYEMLNEKDAELVEMAKEELKSANESIERLEDELQILLLPRDPNDDANIFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EVV +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVVSASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKNLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLILEHQADLLATM 358
>gi|420416248|ref|ZP_14915359.1| peptide chain release factor 1 [Helicobacter pylori NQ4044]
gi|393037694|gb|EJB38729.1| peptide chain release factor 1 [Helicobacter pylori NQ4044]
Length = 352
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 222/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|420403221|ref|ZP_14902407.1| peptide chain release factor 1 [Helicobacter pylori CPY6261]
gi|393020387|gb|EJB21526.1| peptide chain release factor 1 [Helicobacter pylori CPY6261]
Length = 352
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 158/347 (45%), Positives = 235/347 (67%), Gaps = 8/347 (2%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I+ Q++ +I +R L L+ S AE K+L +L I E+ KE +
Sbjct: 3 ILAQKLSSILKRYDELTALL-----SSAEVVSDIKKLTELSKEQSSIEEISVASKEYLSV 57
Query: 124 KSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
I E E DK+++++A EEL + ++ L++ + + L+PKD D+++ LE+RAG
Sbjct: 58 LENIKENKELLEDKELIELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE
Sbjct: 118 TGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
+G HRVQRVP TE GR+HTSA++VAI+P+ D+V++ + DL+I+ +R+GG GGQ NT
Sbjct: 178 AGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNT 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+TH+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+G
Sbjct: 238 TDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SGDRSERIRTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 298 SGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|111115018|ref|YP_709636.1| peptide chain release factor 1 [Borrelia afzelii PKo]
gi|384206694|ref|YP_005592415.1| peptide chain release factor 1 [Borrelia afzelii PKo]
gi|119361512|sp|Q0SNW8.1|RF1_BORAP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|110890292|gb|ABH01460.1| peptide chain release factor 1 [Borrelia afzelii PKo]
gi|342856577|gb|AEL69425.1| peptide chain release factor 1 [Borrelia afzelii PKo]
Length = 357
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 137/256 (53%), Positives = 192/256 (75%), Gaps = 1/256 (0%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLP+D+ D ++ I+E+RAGTGGEEA+LFA +++ MY +YS+KK WK E++ E++L G+
Sbjct: 100 LLPQDENDSKNIIIEIRAGTGGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGF 159
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE I G V+ KLK+ESG+HRVQR+P+TE +GR+ TSA +VA+LP +E ++ + +
Sbjct: 160 KEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEK 219
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
DLRID YRS G+GGQH NTT+SAVR+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE
Sbjct: 220 DLRIDVYRSSGAGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYE 279
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
E S+ RS R +Q+GSGDRSERIRTYNFPQ R+TDHR IT + + + M+GE LD
Sbjct: 280 FEDSKKQEQRSNNRKQQVGSGDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDQ 338
Query: 402 FIDALLLQQEMDAIAS 417
+D L ++ + + S
Sbjct: 339 LLDPLTIELQEQTLKS 354
>gi|332285704|ref|YP_004417615.1| peptide chain release factor 1 [Pusillimonas sp. T7-7]
gi|330429657|gb|AEC20991.1| peptide chain release factor 1 [Pusillimonas sp. T7-7]
Length = 355
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 237/358 (66%), Gaps = 8/358 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ + R ++ L+ +PE + Y K ++E +L + + + + +I
Sbjct: 1 MRDRLEQLAHRLIEVDALLAEPEIAGDMDRYRKISRERAELDPVVAVFNSFLATEGDIKT 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ ++ D DM MA EEL L ++ ++L++ L LLP+D D R LE+RAGTG
Sbjct: 61 AQEMM----ADPDMRGMAEEELMLGKEKLEQLEADLQVLLLPRDPDDSRSVYLEIRAGTG 116
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+E++LFA D+ +MY RY++ W+ E+V ++S++ GYKE A + G GVYG+LKFESG
Sbjct: 117 GDESALFAGDLLRMYTRYAENNSWRVELVSASDSEIGGYKEVIARVDGDGVYGRLKFESG 176
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTT 301
HRVQRVP TE GR+HTSA +VA+LP+ADE D+ + DLRIDT+R+ G+GGQH N T
Sbjct: 177 AHRVQRVPATETQGRIHTSACTVAVLPEADEQSDIVINPADLRIDTFRASGAGGQHINKT 236
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVRVTH+PTG+ + QD+RSQH NK KAL+VL A+L + ++ H + R +G+
Sbjct: 237 DSAVRVTHLPTGLVVECQDDRSQHRNKDKALQVLAARLKDKQQQEQHDKEAAQRKSLVGT 296
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GDRSERIRTYN+PQGRVTDHR+ +T + + +M+G +L+ +ALL + + + +A+ G
Sbjct: 297 GDRSERIRTYNYPQGRVTDHRINLTLYKLGHIMDG-DLNELTNALLAEHQAEQLAALG 353
>gi|219684506|ref|ZP_03539449.1| peptide chain release factor 1 [Borrelia garinii PBr]
gi|219671868|gb|EED28922.1| peptide chain release factor 1 [Borrelia garinii PBr]
Length = 357
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 141/283 (49%), Positives = 205/283 (72%), Gaps = 1/283 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +EL + + L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQELIDLDKKREDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS++K WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSERKKWKTEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L ++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDQLLDPLTIE 346
>gi|421563860|ref|ZP_16009674.1| peptide chain release factor 1 [Neisseria meningitidis NM2795]
gi|402339873|gb|EJU75081.1| peptide chain release factor 1 [Neisseria meningitidis NM2795]
Length = 358
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPIVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|333893681|ref|YP_004467556.1| peptide chain release factor 1 [Alteromonas sp. SN2]
gi|332993699|gb|AEF03754.1| peptide chain release factor 1 [Alteromonas sp. SN2]
Length = 361
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 232/353 (65%), Gaps = 16/353 (4%)
Query: 79 LENLVNQPEASPA------------EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
LENLV + E A ++ +KE +L + + + Q+ +D +
Sbjct: 9 LENLVERFEEVQALLGDPQVIGNQDKFRNLSKEFSQLESVVGGFNAYQQAQENLDSANEM 68
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E +D +M +MA EEL +A + +RL++ L LLPKD D+ +C LEVRAG GG+EA
Sbjct: 69 LKE--DDAEMREMAQEELKIAKADIERLETELQVLLLPKDPNDDSNCFLEVRAGAGGDEA 126
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+F+MY RY++ KGW+ E++ E + GYKE A ISG GVYG LKFESG HRV
Sbjct: 127 AIFAGDLFRMYSRYAETKGWRVELINANEGEHGGYKEVVANISGDGVYGILKFESGGHRV 186
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
QRVP TE GR+HTSA +VA+LP+ E + + + DLRIDT+R+ G+GGQH N T+SA+
Sbjct: 187 QRVPDTESQGRIHTSACTVAVLPEIPESEAIDINPADLRIDTFRASGAGGQHVNKTDSAI 246
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+P+G+ + QDERSQH N+AKA+ VL A+L +E + + R +GSGDRS
Sbjct: 247 RITHLPSGLVVECQDERSQHKNRAKAMSVLQARLNNIEEEKRAAEEASTRKSLVGSGDRS 306
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
ERIRTYNFPQGRVTDHR+ +T + + +++EG +L +D ++ + + D +AS
Sbjct: 307 ERIRTYNFPQGRVTDHRINLTIYRLDEVIEG-DLKQLLDPIMQEHQADLLASL 358
>gi|409427036|ref|ZP_11261567.1| peptide chain release factor 1 [Pseudomonas sp. HYS]
Length = 360
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 220/310 (70%), Gaps = 4/310 (1%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADE 170
++ R Q ++ G ++L+ + D D+ +MA EE+ A ++ L++ L + LLPKD D
Sbjct: 53 AQWRKVQDDLAGAQALLKDS--DPDLREMAVEEVREAKEQLAVLENQLQRMLLPKDPNDG 110
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
R+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 111 RNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEG 170
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYR 289
VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DTYR
Sbjct: 171 DSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYR 230
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
+ G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +++ S
Sbjct: 231 ASGAGGQHINKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDIQTSAAQN 290
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
+ + R +GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G +D I+ LL +
Sbjct: 291 AMASERKLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDVLAG-GVDAVIEPLLAE 349
Query: 410 QEMDAIASFG 419
+ D +A+ G
Sbjct: 350 YQADQLAALG 359
>gi|337754685|ref|YP_004647196.1| peptide chain release factor 1 [Francisella sp. TX077308]
gi|336446290|gb|AEI35596.1| Peptide chain release factor 1 [Francisella sp. TX077308]
Length = 361
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 148/298 (49%), Positives = 215/298 (72%), Gaps = 4/298 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL A + +RL+ L LLP+D D+ + LE+RAGT
Sbjct: 62 KEAAYEMLNEKDAELVEMAKEELKSANEAIERLEDELQILLLPRDPNDDANIFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I+G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISKINGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDISPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+A A+ +L +KL + E + +S R +G
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKNLVG 301
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYN+PQGRVTDHR+ +T + + ++MEG +LD I L+L+ + D +A+
Sbjct: 302 SGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEG-SLDSIIQPLILEHQADLLATM 358
>gi|385328956|ref|YP_005883259.1| peptide chain release factor I [Neisseria meningitidis alpha710]
gi|385341451|ref|YP_005895322.1| peptide chain release factor 1 [Neisseria meningitidis M01-240149]
gi|385857719|ref|YP_005904231.1| peptide chain release factor 1 [Neisseria meningitidis NZ-05/33]
gi|416168783|ref|ZP_11608050.1| peptide chain release factor 1 [Neisseria meningitidis OX99.30304]
gi|416186839|ref|ZP_11613946.1| peptide chain release factor 1 [Neisseria meningitidis M0579]
gi|308389808|gb|ADO32128.1| peptide chain release factor I [Neisseria meningitidis alpha710]
gi|325130724|gb|EGC53462.1| peptide chain release factor 1 [Neisseria meningitidis OX99.30304]
gi|325136665|gb|EGC59265.1| peptide chain release factor 1 [Neisseria meningitidis M0579]
gi|325201657|gb|ADY97111.1| peptide chain release factor 1 [Neisseria meningitidis M01-240149]
gi|325208608|gb|ADZ04060.1| peptide chain release factor 1 [Neisseria meningitidis NZ-05/33]
Length = 358
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TNALIAEHQAELLAAMG 357
>gi|407791373|ref|ZP_11138458.1| peptide chain release factor 1 [Gallaecimonas xiamenensis 3-C-1]
gi|407200605|gb|EKE70611.1| peptide chain release factor 1 [Gallaecimonas xiamenensis 3-C-1]
Length = 363
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 154/331 (46%), Positives = 219/331 (66%), Gaps = 4/331 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L + + Q +++ + ++ +D +M ++A EE+ A + +
Sbjct: 35 FQALSKEFGQLEEVTGCFGRYQGAQADLEVAQEML--AGDDAEMRELAQEEVAGAKAQIE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L L LLPKD DER+ LE+RAG GG+EA++FA D+F+MY RY + + W+ EVV
Sbjct: 93 TLAQELQILLLPKDPNDERNIYLEIRAGAGGDEAAIFAGDLFRMYSRYCEARRWRVEVVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + G+KE A +SG GVYG+ KFESG HRVQRVP TE GR+HTSA +VAILP+
Sbjct: 153 ANEGEHGGFKEVIALVSGDGVYGRFKFESGGHRVQRVPATESQGRIHTSACTVAILPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + V + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + Q+ERSQH NKAKA
Sbjct: 213 EAEAVNISTADLRIDTFRASGAGGQHVNRTDSAVRITHLPTGVVVECQEERSQHKNKAKA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
L VL +++ ME + LS R +GSGDRSERIRTYN+PQGRVTDHR+ +T + +
Sbjct: 273 LSVLASRIQAMEDEKRRLSEEATRRSLVGSGDRSERIRTYNYPQGRVTDHRINLTLYRLD 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
++MEG +LD ID ++ + + D +A+ Q
Sbjct: 333 EVMEG-SLDALIDPIVQEHQADQLAALAQGQ 362
>gi|384899588|ref|YP_005774968.1| peptide chain release factor 1 [Helicobacter pylori F30]
gi|317179532|dbj|BAJ57320.1| peptide chain release factor 1 [Helicobacter pylori F30]
Length = 352
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY KLKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSKLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|385229393|ref|YP_005789309.1| peptide chain release factor 1 [Helicobacter pylori Puno135]
gi|344335831|gb|AEN17792.1| peptide chain release factor 1 [Helicobacter pylori Puno135]
Length = 352
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 208/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+VG +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVGSSENSVGGYKEIIALIKGRGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|145298193|ref|YP_001141034.1| peptide chain release factor 1 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361594|ref|ZP_12962246.1| peptide chain release factor 1 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|166223526|sp|A4SK64.1|RF1_AERS4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|142850965|gb|ABO89286.1| Protein chain release factor A [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356687180|gb|EHI51765.1| peptide chain release factor 1 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 362
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 218/327 (66%), Gaps = 4/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H R ++ ++ K ++ E +D D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQRFRQAEENLEATKLMLEE--DDADLREMAQEELPLAKSTLE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLP+D D+ +C LE+RAG GG+EA++FA D+F+MY RY++++GW+ +V
Sbjct: 93 EQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRISIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A + G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNDGEHGGYKEVIAKVDGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH N+AKA
Sbjct: 213 EAEQIEINANDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ VL A+L E R + R +GSGDRSERIRTYN+PQGR+++HR+ +T + +
Sbjct: 273 MSVLSARLQAAEDERHRAAEQSTRRNLVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLG 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASF 418
++MEG +LD I ++ + + D +AS
Sbjct: 333 EIMEG-DLDCIISPMIQEYQADQLASL 358
>gi|216263966|ref|ZP_03435960.1| peptide chain release factor 1 [Borrelia afzelii ACA-1]
gi|215980010|gb|EEC20832.1| peptide chain release factor 1 [Borrelia afzelii ACA-1]
Length = 357
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 137/256 (53%), Positives = 192/256 (75%), Gaps = 1/256 (0%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLP+D+ D ++ I+E+RAGTGGEEA+LFA +++ MY +YS+KK WK E++ E++L G+
Sbjct: 100 LLPQDENDSKNIIIEIRAGTGGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGF 159
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE I G V+ KLK+ESG+HRVQR+P+TE +GR+ TSA +VA+LP +E ++ + +
Sbjct: 160 KEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEK 219
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
DLRID YRS G+GGQH NTT+SAVR+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE
Sbjct: 220 DLRIDVYRSSGAGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYE 279
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
E S+ RS R +Q+GSGDRSERIRTYNFPQ R+TDHR IT + + + M+GE LD
Sbjct: 280 FEDSKKQEQRSNNRKQQVGSGDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDQ 338
Query: 402 FIDALLLQQEMDAIAS 417
+D L ++ + + S
Sbjct: 339 LLDPLTIELQEQTLKS 354
>gi|203287654|ref|YP_002222669.1| peptide chain release factor A [Borrelia recurrentis A1]
gi|201084874|gb|ACH94448.1| peptide chain release factor A [Borrelia recurrentis A1]
Length = 359
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 240/357 (67%), Gaps = 18/357 (5%)
Query: 62 IKIMEQRVLAIERRSACLE------NLV-NQPEASP--AEYSKANKELRKLRDSMHLISE 112
+K+ +++ IE++ LE NL+ NQ E S EY+ K K + H++++
Sbjct: 1 MKMFLEKLNPIEKKIKILEEKLQDVNLIKNQKEYSKIIKEYNYLEKIKEKKDEYQHILNQ 60
Query: 113 LRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERD 172
+ QK I ++ +M D+ +E+ ++ +++ + LL +D+ D+++
Sbjct: 61 INENQK--------ILSEEDNLEMKDLIKQEIAHLYSKKDEIENTIKILLLHQDENDDKN 112
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
I+E+RAGTGGEEA+LFA ++++MY +YS+KK WK E++ +++L G+KE S I G
Sbjct: 113 IIIEIRAGTGGEEAALFAHNLYEMYTKYSEKKKWKTELINFNKTELGGFKEVSFEIKGKD 172
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
V+ KLK ESG+HRVQR+P+TE +G++ TSA +VA+LP+ ++ D+ + ++DLR D YRS G
Sbjct: 173 VFKKLKHESGVHRVQRIPITESNGKLQTSAATVAVLPEVEDTDIEINDKDLRTDVYRSSG 232
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRS 352
+GGQH NTT+SAVR+TH+PTG+ Q+ERSQH NK +A+K+L A+LYE+E + RS
Sbjct: 233 AGGQHVNTTDSAVRITHLPTGIVAQCQNERSQHKNKEQAMKILRARLYELENLKKQEQRS 292
Query: 353 KLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
R +Q+GSGDRSERIRTYNFPQ RVTDHR I+ + + ++M+GE LD ++ L L+
Sbjct: 293 NDRKQQVGSGDRSERIRTYNFPQNRVTDHRANISLYKLEEIMQGE-LDSLLNTLALK 348
>gi|383791013|ref|YP_005475587.1| peptide chain release factor 1 [Spirochaeta africana DSM 8902]
gi|383107547|gb|AFG37880.1| peptide chain release factor 1 [Spirochaeta africana DSM 8902]
Length = 356
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 227/336 (67%), Gaps = 4/336 (1%)
Query: 75 RSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE 132
R + +E L+ PE PA + + +E +L + + +E R +++ + L+ E +
Sbjct: 13 RHSEVEKLIADPELHKDPARFKELMREHSQLCELVEAYAEYRDTSQQLQDNRELLNE-EK 71
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M +MA EL + L L L+P+D DE+ I+E+RAGTGG+EA LFA D
Sbjct: 72 DPEMREMAKAELDELEQRSEELTKQLRLLLVPRDPMDEKSAIIEIRAGTGGDEAGLFAAD 131
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+++MY RY ++ G KFE + V ES++ G+KE + SG YG L+FESG+HRVQRVP T
Sbjct: 132 LYRMYARYGERHGLKFEFITVNESEIGGFKEVVFSASGKNAYGSLRFESGVHRVQRVPAT 191
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E GR+HTSAV+VA+LP+A++ D++L + +L+ID +RS G GGQ NTT+SAVR+TH+PT
Sbjct: 192 ESGGRIHTSAVTVAVLPEAEDTDIQLHDNELKIDVFRSSGPGGQSVNTTDSAVRITHLPT 251
Query: 313 GMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYN 372
++ QDE+SQ NKAKA++VL A+LYEME + R+ R QIGSGDRSERIRTYN
Sbjct: 252 STVVTCQDEKSQLKNKAKAMRVLKARLYEMEEKKKQEERASFRRNQIGSGDRSERIRTYN 311
Query: 373 FPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
FPQ R+TDHR+ +T + + +M+GE LD +DAL L
Sbjct: 312 FPQNRLTDHRINLTLYKLDLVMQGE-LDEILDALQL 346
>gi|443473457|ref|ZP_21063481.1| Peptide chain release factor 1 [Pseudomonas pseudoalcaligenes
KF707]
gi|442904194|gb|ELS29310.1| Peptide chain release factor 1 [Pseudomonas pseudoalcaligenes
KF707]
Length = 360
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 222/330 (67%), Gaps = 4/330 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
++ +KE ++ + E R Q +++G ++L+ + D D+ +MA EE+ A
Sbjct: 33 GKFRAYSKEFAEVEPVILAYREFRKVQGDLEGAQALLKDS--DPDLREMAEEEVDQARTR 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LVGLEDRLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERQGWRVEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPE 210
Query: 271 ADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
DE + + DLR+DTYR+ G+GGQH N T+SAVR+THIP+G+ + Q+ERSQH N+A
Sbjct: 211 PDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPSGIVVECQEERSQHKNRA 270
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
KA+ L AKL + + + H S R +GSGDRSERIRTYN+PQGRVTDHR+ +T +A
Sbjct: 271 KAMAWLAAKLNDQQEAAAHKEMSDTRRLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYA 330
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ D+M G ++ I+ LL + + D +A+ G
Sbjct: 331 LDDVMAG-GVEAVIEPLLAEYQADQLAALG 359
>gi|269961569|ref|ZP_06175931.1| Peptide chain release factor 1 [Vibrio harveyi 1DA3]
gi|424045196|ref|ZP_17782762.1| peptide chain release factor 1 [Vibrio cholerae HENC-03]
gi|269833610|gb|EEZ87707.1| Peptide chain release factor 1 [Vibrio harveyi 1DA3]
gi|408886639|gb|EKM25309.1| peptide chain release factor 1 [Vibrio cholerae HENC-03]
Length = 362
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 232/343 (67%), Gaps = 6/343 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTNCFQAYQQAQDDLIAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A D +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKDAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ VL A++ + E+ R S R +GSGDRS+RIRTYN+PQ
Sbjct: 257 VECQDERSQHKNKAKAMAVLAARIVQAEQERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GRV+DHR+ +T + ++++MEG +L ID ++ + + D +A+
Sbjct: 317 GRVSDHRINLTIYRLNEVMEG-DLQSLIDPVVQEHQADQLAAL 358
>gi|421540940|ref|ZP_15987076.1| peptide chain release factor 1 [Neisseria meningitidis 93004]
gi|433469811|ref|ZP_20427221.1| peptide chain release factor 1 [Neisseria meningitidis 98080]
gi|402316805|gb|EJU52345.1| peptide chain release factor 1 [Neisseria meningitidis 93004]
gi|432201880|gb|ELK57953.1| peptide chain release factor 1 [Neisseria meningitidis 98080]
Length = 358
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|73662075|ref|YP_300856.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418575559|ref|ZP_13139709.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|119361617|sp|Q49Z65.1|RF1_STAS1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|72494590|dbj|BAE17911.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379325961|gb|EHY93089.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 358
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 239/351 (68%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ +P K +KE +L+ ++ + + + +++I ++ ++ +
Sbjct: 8 VEERYEQLNEMLSDPDVVNNPDNLRKYSKEQAELQKTVDVYRDYKQTKEDISEVEEMLRD 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++D D ++M EE ++ +L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TKDNDEIEMLKEEHQTLQNKVPKLEEELKFLLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY +Y++ +K ++V VTESD GYKE S ++SG G + KLK+E+G HRVQRV
Sbjct: 127 AGDLFRMYSKYAETLNYKTDIVEVTESDHGGYKEISFSVSGNGAFSKLKYENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
IPTG+ I+ E+SQ N+ KALKVL A+L++M+ + R +G+GDRSERIR
Sbjct: 247 IPTGV-IATSSEKSQIQNREKALKVLKARLFDMKLQEEQQKYAAQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG+ LD IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLDQIMEGK-LDEIIDALTLAEQTDKLKELNN 355
>gi|388259168|ref|ZP_10136342.1| peptide chain release factor 1 [Cellvibrio sp. BR]
gi|387937126|gb|EIK43683.1| peptide chain release factor 1 [Cellvibrio sp. BR]
Length = 360
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 150/290 (51%), Positives = 207/290 (71%), Gaps = 6/290 (2%)
Query: 133 DKDMLDMATEEL--CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D DM +MA EEL C A E +L+ L K LLPKD DE++C LE+RAGTGG+EA++F+
Sbjct: 73 DDDMKEMAEEELKDCEAQLEPMQLE--LQKLLLPKDPNDEKNCYLEIRAGTGGDEAAIFS 130
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+F+MY RY++ +GW+ EV+ E + G+KE +SG GVY KLKFESG HRVQRVP
Sbjct: 131 GDLFRMYSRYAETQGWRVEVLSQNEGEHGGFKEIITLVSGQGVYSKLKFESGAHRVQRVP 190
Query: 251 LTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
TE GR+HTSA +VA++P+ADE+ ++ + DLRIDT+R+ G+GGQH N T+SA+R+ H
Sbjct: 191 ETESQGRIHTSACTVAVMPEADEMEEININKADLRIDTFRASGAGGQHVNKTDSAIRIVH 250
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I QDERSQH N+A+A+ +L KL M+ H S S R +GSGDRSERIR
Sbjct: 251 LPTGLVIECQDERSQHKNRARAMSLLATKLKTMQEDAAHKSLSDERRNLVGSGDRSERIR 310
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
TYN+PQGRVTDHR+ +T +++ +M+G +LD + L + + D +A+
Sbjct: 311 TYNYPQGRVTDHRINLTLYSLDAIMQG-DLDPVVGPLANEYQADQLAAIA 359
>gi|407699633|ref|YP_006824420.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Black
Sea 11']
gi|407248780|gb|AFT77965.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Black
Sea 11']
Length = 361
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 154/327 (47%), Positives = 223/327 (68%), Gaps = 4/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L D + + + Q+ + + ++ E +D +M +MA EE+ A E +
Sbjct: 35 FRNLSKEFSQLEDVVAGFNAYQQAQENLASAQEMLNE--DDAEMREMAQEEMKEAKAEIE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
RL++ L LLPKD D+ +C LE+RAG GG+EA++FA D+F+MY RY++ +GW+ E+V
Sbjct: 93 RLETELQVLLLPKDPNDDNNCFLEIRAGAGGDEAAIFAGDLFRMYSRYAESRGWRVELVN 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A +SG GVYG LKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 153 ANEGEHGGYKEVIANVSGDGVYGVLKFESGGHRVQRVPETESQGRIHTSACTVAVLPEIP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + + +LRIDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH N+AKA
Sbjct: 213 ESQAIEINPAELRIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ VL A+L ++E + + R +GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 273 MSVLQARLNQIEEEKRAAEEASTRKSLVGSGDRSERIRTYNFPQGRVTDHRINLTIYRLD 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASF 418
+++EG +L ID +L + + D +AS
Sbjct: 333 EVVEG-DLKQLIDPILQEHQADLLASL 358
>gi|420154949|ref|ZP_14661821.1| peptide chain release factor 1 [Clostridium sp. MSTE9]
gi|394759930|gb|EJF42579.1| peptide chain release factor 1 [Clostridium sp. MSTE9]
Length = 360
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 148/315 (46%), Positives = 216/315 (68%), Gaps = 1/315 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y++ KE + L + E + ++ ++ E +++M +M +EL A D+ +
Sbjct: 31 YAELMKEYKNLEPIVEKYREYLKAVQTVEDSTEMLGESGLEREMKEMIQQELDDAKDQVE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
R L LLP+D DER+ I+E+R G GGEEA+LF+ +F+MY Y+ ++GWK E++
Sbjct: 91 RTAEELKILLLPRDPNDERNVIMEIRGGAGGEEAALFSARLFRMYSMYATRRGWKTELLN 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V E++L GYKE S I+G G Y +LK+ESG+HRVQRVP TE GR+HTS +VA+LP+ D
Sbjct: 151 VNETELGGYKEISFQITGDGAYSRLKYESGVHRVQRVPETETQGRIHTSTATVAVLPEVD 210
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+V++ + DL+IDTYR+ G+GGQH N T SA+R+TH+PTG + QDERSQ NK KA+
Sbjct: 211 DVEIEINPTDLQIDTYRASGAGGQHVNKTESAIRITHLPTGTVVECQDERSQFKNKDKAM 270
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
KVL ++LYE ++ ++ R Q+G+GDRSERIRTYNFPQGR+TDHR+G+T + + +
Sbjct: 271 KVLRSRLYEAKQREQDAQVAQQRKSQVGTGDRSERIRTYNFPQGRLTDHRIGLTIYRLEE 330
Query: 393 MMEGENLDIFIDALL 407
M+ G +LD IDAL+
Sbjct: 331 MLSG-DLDEVIDALI 344
>gi|308182253|ref|YP_003926380.1| peptide chain release factor 1 [Helicobacter pylori PeCan4]
gi|420426270|ref|ZP_14925326.1| peptide chain release factor 1 [Helicobacter pylori Hp A-9]
gi|308064438|gb|ADO06330.1| peptide chain release factor 1 [Helicobacter pylori PeCan4]
gi|393044990|gb|EJB45980.1| peptide chain release factor 1 [Helicobacter pylori Hp A-9]
Length = 352
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|354724247|ref|ZP_09038462.1| peptide chain release factor 1 [Enterobacter mori LMG 25706]
Length = 360
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIRAAEVAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|339503870|ref|YP_004691290.1| peptide chain release factor 1 [Roseobacter litoralis Och 149]
gi|338757863|gb|AEI94327.1| peptide chain release factor 1 [Roseobacter litoralis Och 149]
Length = 351
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 158/319 (49%), Positives = 225/319 (70%), Gaps = 16/319 (5%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDML---DMATEELCLAIDEEKRLQSLL-------LK 160
S+LR ++I + L+ + + +ML DMA LA +E RL+S L
Sbjct: 38 SDLRPVVEQISAYQQLLNDLEDAAEMLGDPDMA----PLAEEEIPRLKSALPQAEAALQL 93
Query: 161 SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG 220
+LLPKD AD + +LE+R GTGG+EA+LFA D+F+MY+RY++ +GWK +V+ + E++L G
Sbjct: 94 ALLPKDKADAKPAMLEIRPGTGGDEAALFAGDLFRMYQRYAETQGWKVDVIELQETELGG 153
Query: 221 YKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRN 280
KE A I G V+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A++VD+ +
Sbjct: 154 IKEVVAHIKGADVFARLKYESGVHRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIHIEA 213
Query: 281 EDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLY 340
DLRIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY
Sbjct: 214 NDLRIDTMRSSGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQHRNREIAMQVLKARLY 272
Query: 341 EMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLD 400
++ERSR+ RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +++G +LD
Sbjct: 273 DLERSRVDDERSADRAAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYRLDAILQG-DLD 331
Query: 401 IFIDALLLQQEMDAIASFG 419
IDAL + +A G
Sbjct: 332 EIIDALTAHAQAQLMADMG 350
>gi|385338525|ref|YP_005892398.1| peptide chain release factor I (RF-1) [Neisseria meningitidis WUE
2594]
gi|433476134|ref|ZP_20433470.1| peptide chain release factor 1 [Neisseria meningitidis 88050]
gi|433480334|ref|ZP_20437618.1| peptide chain release factor 1 [Neisseria meningitidis 63041]
gi|433514035|ref|ZP_20470821.1| peptide chain release factor 1 [Neisseria meningitidis 63049]
gi|433516289|ref|ZP_20473053.1| peptide chain release factor 1 [Neisseria meningitidis 2004090]
gi|433518111|ref|ZP_20474852.1| peptide chain release factor 1 [Neisseria meningitidis 96023]
gi|433520399|ref|ZP_20477113.1| peptide chain release factor 1 [Neisseria meningitidis 65014]
gi|433524644|ref|ZP_20481301.1| peptide chain release factor 1 [Neisseria meningitidis 97020]
gi|433528987|ref|ZP_20485594.1| peptide chain release factor 1 [Neisseria meningitidis NM3652]
gi|433530993|ref|ZP_20487576.1| peptide chain release factor 1 [Neisseria meningitidis NM3642]
gi|433533260|ref|ZP_20489818.1| peptide chain release factor 1 [Neisseria meningitidis 2007056]
gi|433535111|ref|ZP_20491646.1| peptide chain release factor 1 [Neisseria meningitidis 2001212]
gi|433541572|ref|ZP_20498018.1| peptide chain release factor 1 [Neisseria meningitidis 63006]
gi|319410939|emb|CBY91334.1| peptide chain release factor I (RF-1) [Neisseria meningitidis WUE
2594]
gi|432208650|gb|ELK64626.1| peptide chain release factor 1 [Neisseria meningitidis 88050]
gi|432214510|gb|ELK70410.1| peptide chain release factor 1 [Neisseria meningitidis 63041]
gi|432246197|gb|ELL01653.1| peptide chain release factor 1 [Neisseria meningitidis 63049]
gi|432251575|gb|ELL06939.1| peptide chain release factor 1 [Neisseria meningitidis 2004090]
gi|432252241|gb|ELL07598.1| peptide chain release factor 1 [Neisseria meningitidis 96023]
gi|432252696|gb|ELL08047.1| peptide chain release factor 1 [Neisseria meningitidis 65014]
gi|432258330|gb|ELL13616.1| peptide chain release factor 1 [Neisseria meningitidis 97020]
gi|432264091|gb|ELL19301.1| peptide chain release factor 1 [Neisseria meningitidis NM3652]
gi|432264804|gb|ELL20001.1| peptide chain release factor 1 [Neisseria meningitidis NM3642]
gi|432265388|gb|ELL20583.1| peptide chain release factor 1 [Neisseria meningitidis 2007056]
gi|432270305|gb|ELL25445.1| peptide chain release factor 1 [Neisseria meningitidis 2001212]
gi|432276404|gb|ELL31461.1| peptide chain release factor 1 [Neisseria meningitidis 63006]
Length = 358
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|373465770|ref|ZP_09557214.1| peptide chain release factor 1 [Lactobacillus kisonensis F0435]
gi|371759372|gb|EHO48110.1| peptide chain release factor 1 [Lactobacillus kisonensis F0435]
Length = 361
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 148/343 (43%), Positives = 233/343 (67%), Gaps = 3/343 (0%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A ++ K +KE LRD++ + + +++ K
Sbjct: 7 KLQAVVDRYDELNELISDPEVIADTQKFMKLSKEEADLRDTVAAFKKYQKVTGQLNDDKE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ D++++L+ L LLPKD D+++ I+E+ GG+E
Sbjct: 67 MLREKIDDPDLETMVKDEISDYTDQKEKLEDELKVMLLPKDPNDDKNIIMEIHGAAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D+F MY +Y++++GW+ EVV E+++ G+KE + I+G VY KLK+E+G HR
Sbjct: 127 ASLFAADLFSMYSKYAERQGWQVEVVDKNETEVGGFKEIALMITGDKVYSKLKYENGAHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+K+L A++Y+ + + R +G+GDRS
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYSQQEQDQYNAERKSAVGTGDRS 306
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M GE L IDAL+L
Sbjct: 307 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGE-LGEIIDALIL 348
>gi|300313560|ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirillum seropedicae SmR1]
gi|300076345|gb|ADJ65744.1| peptide chain release factor 1 (RF-1) protein [Herbaspirillum
seropedicae SmR1]
Length = 359
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 151/292 (51%), Positives = 209/292 (71%), Gaps = 2/292 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A EE+ A + L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 ELLADPDMKAFAQEEIDGAKARMEGLELDLQKMLLPKDPNDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V +ES+L GYKE A I G+G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGLGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + D+RIDTYR+ G+GGQH N T+SAVR+
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEVGDVEINPADIRIDTYRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QD+RSQH NKA+A+KVL A++ +++ + + R IGSGDRSER
Sbjct: 247 THLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSEEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGR+TDHR+ +T + + +M+G +LD +AL+ + + + +A G
Sbjct: 307 IRTYNFPQGRMTDHRINLTLYKLDFIMDG-DLDELTNALITEHQAELLAQLG 357
>gi|418425287|ref|ZP_12998381.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387717083|gb|EIK05109.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS1]
Length = 358
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ PE + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPEVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIEEMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG +L+ IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTDKLKELNN 355
>gi|416195568|ref|ZP_11617807.1| peptide chain release factor 1 [Neisseria meningitidis CU385]
gi|416212282|ref|ZP_11621849.1| peptide chain release factor 1 [Neisseria meningitidis M01-240013]
gi|427827316|ref|ZP_18994356.1| peptide chain release factor 1 [Neisseria meningitidis H44/76]
gi|316984833|gb|EFV63790.1| peptide chain release factor 1 [Neisseria meningitidis H44/76]
gi|325140851|gb|EGC63361.1| peptide chain release factor 1 [Neisseria meningitidis CU385]
gi|325144920|gb|EGC67204.1| peptide chain release factor 1 [Neisseria meningitidis M01-240013]
Length = 385
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 48 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 103
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 104 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 163
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 164 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 223
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 224 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 283
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 284 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 343
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 344 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 384
>gi|167031789|ref|YP_001667020.1| peptide chain release factor 1 [Pseudomonas putida GB-1]
gi|189039985|sp|B0KNE4.1|RF1_PSEPG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166858277|gb|ABY96684.1| peptide chain release factor 1 [Pseudomonas putida GB-1]
Length = 360
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/304 (49%), Positives = 217/304 (71%), Gaps = 4/304 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D D+ +MA EE+ A ++ L+S L + LLPKD D R+ LE
Sbjct: 59 QGDLEGAQALLKDS--DPDLREMAVEEVREAKEQLLTLESQLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGENVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+ G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH N T+SA+R+TH+PTG+ + Q+ERSQH N+A+A+ L AKL +M+ S + + R
Sbjct: 237 QHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNAIASER 296
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+GSGDRSERIRTYN+PQGRVTDHR+ +T +++ D++ G ++ I+ LL + + D +
Sbjct: 297 KLLVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSG-GVEAVIEPLLAEYQADQL 355
Query: 416 ASFG 419
A+ G
Sbjct: 356 AALG 359
>gi|342732944|ref|YP_004771783.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456312|ref|YP_005668909.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417960276|ref|ZP_12602903.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-1]
gi|417962249|ref|ZP_12604501.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-2]
gi|417963914|ref|ZP_12605757.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-3]
gi|417964957|ref|ZP_12606590.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-4]
gi|417967756|ref|ZP_12608821.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-co]
gi|418015648|ref|ZP_12655213.1| peptide chain release factor RF1 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373195|ref|ZP_12965286.1| Peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330399|dbj|BAK57041.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505983|gb|EGX28277.1| peptide chain release factor RF1 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984657|dbj|BAK80333.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380330785|gb|EIA21960.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-2]
gi|380331373|gb|EIA22428.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-3]
gi|380331379|gb|EIA22433.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-1]
gi|380339458|gb|EIA28195.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-4]
gi|380340794|gb|EIA29344.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-co]
gi|380341584|gb|EIA30058.1| Peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 358
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/360 (44%), Positives = 243/360 (67%), Gaps = 6/360 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M QR+ +E++ L ++ PE ++ E+ K K+ +L E + +I+
Sbjct: 1 MLQRLDFLEQKYEELSIKISDPEVMSNQKEWQKLCKDHSELEVITLKYREYKKVLDDIEY 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ + EDK+ ++A EE+ + + +++ L LLPKD DE++ +E+RAGTG
Sbjct: 61 SKEML-DDEEDKEFRELAQEEIKELQNNKITIENELKILLLPKDPNDEKNVFVEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA ++F+MY +Y + K WK E++ V ++D+ G+KE I G G Y KLK+ESG
Sbjct: 120 GDEAALFAANLFRMYSKYVENKRWKIEMISVNDTDIGGFKEVVFMIKGSGAYSKLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSA +VA+LP+ D+VDV + DLRID +RS G+GGQ NTT+
Sbjct: 180 VHRVQRVPDTEASGRIHTSAATVAVLPEVDDVDVEINQNDLRIDVFRSSGNGGQSVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM-ERSRIHLSRSKLRSEQIGS 361
SAVR+THIP+G+ IS QDE+SQ NK KA+K+L A+L+E+ E+ R+ L ++ R Q+GS
Sbjct: 240 SAVRITHIPSGIVISCQDEKSQLKNKEKAMKLLRARLFEIAEQERLKLI-AEDRKSQVGS 298
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
GDRSERIRTYN+PQGRVTDHR+G+T + + M+G +D I+ L+ + + + + G +
Sbjct: 299 GDRSERIRTYNYPQGRVTDHRIGLTIYKLDSFMDG-YIDEIIEGLITEDQSEKMKQMGES 357
>gi|114768932|ref|ZP_01446558.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2255]
gi|114549849|gb|EAU52730.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2255]
Length = 351
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/302 (50%), Positives = 222/302 (73%), Gaps = 8/302 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDML------DMATEELCLAIDEEKRLQSLLLKSLLP 164
S+L+ +I+ K+ + + SE ++ML +A EEL ++ L+ LL SLLP
Sbjct: 38 SDLKPVVDQIENYKATLLDISEAEEMLLDPELKVLAEEELPNLKEKLPILEHKLLLSLLP 97
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
KD+AD++ I+E+RAGTGG+EA+LFA D+ +MY R+ + +GWKFE+V E++L GYKEA
Sbjct: 98 KDEADDKPAIIEIRAGTGGDEAALFAGDLLRMYNRFCEDQGWKFEIVEGNETELGGYKEA 157
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
+ GVGV+ +LK+ESG+HRVQRVP TE GRVHTSA +VAI+P+A+ +D+ + D+R
Sbjct: 158 IINVKGVGVFARLKYESGVHRVQRVPTTESGGRVHTSAATVAIMPEAENIDLEIPTTDIR 217
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
+DTYRS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A+ VL +LY+++R
Sbjct: 218 LDTYRSSGAGGQHVNTTDSAVRITHLPTGLIVT-SSEKSQHRNREIAMNVLRTRLYDLQR 276
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
+ R+ R +Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + + +M+G +L+ FID
Sbjct: 277 QQAADERAATRKDQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKLDQVMQG-DLNEFID 335
Query: 405 AL 406
AL
Sbjct: 336 AL 337
>gi|254671653|emb|CBA09383.1| peptide chain release factor 1 [Neisseria meningitidis alpha153]
Length = 372
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 35 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 90
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 91 FAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 150
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 151 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 210
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 211 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 270
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 271 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 330
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 331 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 371
>gi|91776824|ref|YP_546580.1| peptide chain release factor 1 [Methylobacillus flagellatus KT]
gi|119361559|sp|Q1GYE8.1|RF1_METFK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91710811|gb|ABE50739.1| bacterial peptide chain release factor 1 (bRF-1) [Methylobacillus
flagellatus KT]
Length = 360
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/291 (52%), Positives = 208/291 (71%), Gaps = 8/291 (2%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M + A EE + ++ L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 71 DPEMKEFAQEETEAGKQKLDDIEKQLQKLLLPKDPNDERNIFLEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++++GWK E+V ES++ GYKE A I G G Y KLKFESG HRVQRVP T
Sbjct: 131 LFRMYSRYAERQGWKVEIVSANESEVGGYKEIIAKIEGFGAYSKLKFESGGHRVQRVPET 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA+LP+ DEV DV + D+RIDT+R+ G+GGQH N T+SAVR+TH P
Sbjct: 191 ETQGRIHTSACTVAVLPEVDEVSDVTINPADIRIDTFRASGAGGQHINKTDSAVRITHFP 250
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ---IGSGDRSERI 368
TG+ + QD RSQH NKA+A++VL A++ + ++ +SK+ SE+ IGSGDRSERI
Sbjct: 251 TGIVVECQDGRSQHSNKAQAMQVLAARI---KAKQVDEQQSKIASERRSLIGSGDRSERI 307
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RTYN+PQGR+TDHR+ +T + I + EG ++D I+AL + + D +A+ G
Sbjct: 308 RTYNYPQGRITDHRINLTLYKIDAITEG-DMDELINALAAEHQADLLATLG 357
>gi|269926759|ref|YP_003323382.1| peptide chain release factor 1 [Thermobaculum terrenum ATCC
BAA-798]
gi|269790419|gb|ACZ42560.1| peptide chain release factor 1 [Thermobaculum terrenum ATCC
BAA-798]
Length = 355
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 241/357 (67%), Gaps = 5/357 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE+R L+ +++ PE + P+ + +E +L D + L E + + +
Sbjct: 1 MLERLDNIEKRFDELDRMMSDPEIFSDPSRLMEVARERSELEDIVSLYREYKKVKLTREE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + D D+ MA EE D EK L+ L +LLPKD DE+D I+E+RAGTG
Sbjct: 61 DRRLMEDP--DPDIRQMAEEEYEQLADREKDLEERLKIALLPKDPNDEKDVIVEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+++MY RY++++GWK EV+ +ESD G+KE + G G Y +LK+ESG
Sbjct: 119 GEEAALFAADLYRMYTRYAERQGWKTEVLSTSESDAGGFKEIIFEVKGRGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE GR+HTS +VA+LP+A+EV+V + EDLRID +RS G GGQ NTT+
Sbjct: 179 VHRVQRVPVTESQGRIHTSTATVAVLPEAEEVEVEIDPEDLRIDVFRSTGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ ++ QDE+SQ N+AKA+ VL A+LYEMER + ++R +G+G
Sbjct: 239 SAVRITHLPTGLVVTCQDEKSQLKNRAKAMAVLRARLYEMERRKREEELGQVRRSMVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+RSE+IRTYNFPQ RVTDHR+ + + +++GE +D I++L + + + S G
Sbjct: 299 ERSEKIRTYNFPQDRVTDHRIKESFSNLPAILDGE-IDRIIESLQVADRAEQLQSAG 354
>gi|194099102|ref|YP_002002187.1| peptide chain release factor 1 [Neisseria gonorrhoeae NCCP11945]
gi|240014585|ref|ZP_04721498.1| peptide chain release factor 1 [Neisseria gonorrhoeae DGI18]
gi|240121107|ref|ZP_04734069.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID24-1]
gi|254494127|ref|ZP_05107298.1| peptide chain release factor 1 [Neisseria gonorrhoeae 1291]
gi|268595228|ref|ZP_06129395.1| peptide chain release factor 1 [Neisseria gonorrhoeae 35/02]
gi|268597436|ref|ZP_06131603.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA19]
gi|268599608|ref|ZP_06133775.1| peptide chain release factor 1 [Neisseria gonorrhoeae MS11]
gi|268601773|ref|ZP_06135940.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID18]
gi|268682561|ref|ZP_06149423.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID332]
gi|268684722|ref|ZP_06151584.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-92-679]
gi|268687001|ref|ZP_06153863.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-93-1035]
gi|291043371|ref|ZP_06569094.1| peptide chain release factor 1 [Neisseria gonorrhoeae DGI2]
gi|385336113|ref|YP_005890060.1| peptide chain release factor 1 [Neisseria gonorrhoeae TCDC-NG08107]
gi|238690206|sp|B4RN52.1|RF1_NEIG2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|193934392|gb|ACF30216.1| peptide chain release factor 1 [Neisseria gonorrhoeae NCCP11945]
gi|226513167|gb|EEH62512.1| peptide chain release factor 1 [Neisseria gonorrhoeae 1291]
gi|268548617|gb|EEZ44035.1| peptide chain release factor 1 [Neisseria gonorrhoeae 35/02]
gi|268551224|gb|EEZ46243.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA19]
gi|268583739|gb|EEZ48415.1| peptide chain release factor 1 [Neisseria gonorrhoeae MS11]
gi|268585904|gb|EEZ50580.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID18]
gi|268622845|gb|EEZ55245.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID332]
gi|268625006|gb|EEZ57406.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-92-679]
gi|268627285|gb|EEZ59685.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-93-1035]
gi|291012977|gb|EFE04960.1| peptide chain release factor 1 [Neisseria gonorrhoeae DGI2]
gi|317164656|gb|ADV08197.1| peptide chain release factor 1 [Neisseria gonorrhoeae TCDC-NG08107]
Length = 358
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 228/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEIRAGTGGGEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLR DT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRTDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREVQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|83953606|ref|ZP_00962327.1| peptide chain release factor 1 [Sulfitobacter sp. NAS-14.1]
gi|83841551|gb|EAP80720.1| peptide chain release factor 1 [Sulfitobacter sp. NAS-14.1]
Length = 351
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/316 (48%), Positives = 225/316 (71%), Gaps = 10/316 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS-------LL 163
++LR ++ID + L+ + + + ML TE LA +E RL++ L ++ LL
Sbjct: 38 ADLRPVVEQIDAYRQLLQDMDDARAMLK-DTEMAELAEEELPRLKAALPQAEADLQLALL 96
Query: 164 PKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKE 223
P+D+AD++ +LE+R GTGG+EA+LFA D+ +MY+RY++ +GWKFE++ ++L G KE
Sbjct: 97 PRDEADKKPAMLEIRPGTGGDEAALFAADLLRMYQRYAEARGWKFELIEQQFTELGGVKE 156
Query: 224 ASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDL 283
A I G V+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A++VD+ + DL
Sbjct: 157 VVAHIKGENVFARLKYESGVHRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIHIDANDL 216
Query: 284 RIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEME 343
RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY+ME
Sbjct: 217 RIDTMRSSGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQHRNREIAMQVLKARLYDME 275
Query: 344 RSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFI 403
R R+ RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +M+G +LD +
Sbjct: 276 RQRVDSERSASRAAQVGSGDRSERIRTYNFPQGRLTDHRINLTLYRLEAVMQG-DLDEIV 334
Query: 404 DALLLQQEMDAIASFG 419
DAL + +A G
Sbjct: 335 DALTADAQAQLLAEMG 350
>gi|421566006|ref|ZP_16011768.1| peptide chain release factor 1 [Neisseria meningitidis NM3081]
gi|402341888|gb|EJU77060.1| peptide chain release factor 1 [Neisseria meningitidis NM3081]
Length = 358
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TNALIAEHQAELLAAMG 357
>gi|51596331|ref|YP_070522.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP
32953]
gi|81639458|sp|Q66AX5.1|RF1_YERPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|51589613|emb|CAH21243.1| peptide chain release factor RF-1 [Yersinia pseudotuberculosis IP
32953]
Length = 360
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 224/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ +D +M +MA EEL +A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSAQDDIEAAEMML----DDLEMREMAQEELKIAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAETRRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKISGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +G+GDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAEASERRNLLGTGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I ++ + + D +++
Sbjct: 335 GK-LDMLIQPIVQEYQADQLSAL 356
>gi|261378877|ref|ZP_05983450.1| peptide chain release factor 1 [Neisseria cinerea ATCC 14685]
gi|269144693|gb|EEZ71111.1| peptide chain release factor 1 [Neisseria cinerea ATCC 14685]
Length = 358
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|335055656|ref|YP_585342.3| peptide chain release factor RF-1 [Cupriavidus metallidurans CH34]
gi|93355984|gb|ABF10073.1| peptide chain release factor RF-1 [Cupriavidus metallidurans CH34]
Length = 371
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 224/329 (68%), Gaps = 6/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L + R Q ++ ++L+ +D +M + A +E+ A +
Sbjct: 45 QYRKLSREHAELSPVAEQYGQYRQAQDDLATAQALL----DDPEMKEFAADEIDAARERL 100
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ L LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ E++
Sbjct: 101 QSLENSLQTLLLPKDPNDDRNLLLEIRAGTGGEESALFAADLLRMYTRYAERRRWQVEIM 160
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ SDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 161 SESPSDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEA 220
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DEV +V + DLR+DT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH NK K
Sbjct: 221 DEVGEVEINPSDLRVDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKEK 280
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+KVL A++ +M+ + R IGSGDRS+RIRTYNFPQGRVTDHR+ +T + I
Sbjct: 281 AMKVLAARIKDMQLRAAQAKEANTRRNLIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKI 340
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+M+G +LD I AL + + D +A+ G
Sbjct: 341 DMIMDG-DLDELISALSAEHQADQLAALG 368
>gi|384890458|ref|YP_005764591.1| peptide chain release factor 1 [Helicobacter pylori 908]
gi|385223128|ref|YP_005783054.1| Peptide chain release factor 1 [Helicobacter pylori 2017]
gi|385230976|ref|YP_005790895.1| Peptide chain release factor 1 [Helicobacter pylori 2018]
gi|307636767|gb|ADN79217.1| peptide chain release factor 1 [Helicobacter pylori 908]
gi|325995353|gb|ADZ50758.1| Peptide chain release factor 1 [Helicobacter pylori 2018]
gi|325996950|gb|ADZ49158.1| Peptide chain release factor 1 [Helicobacter pylori 2017]
Length = 352
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 236/350 (67%), Gaps = 10/350 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE-- 119
+ I+ +++ +I RR L L+ S AE K L +L I E+ KE
Sbjct: 1 MSILAEKLSSILRRYDELTALL-----SSAEVVSDIKRLTELSKEQSSIEEISVASKEYL 55
Query: 120 --IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
++G+K E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+
Sbjct: 56 SVLEGIKE-NKELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLEL 114
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +L
Sbjct: 115 RAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRL 174
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ
Sbjct: 175 KFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQC 234
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R E
Sbjct: 235 VNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKE 294
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
Q+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 295 QVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|386853602|ref|YP_006202887.1| peptide chain release factor 1 [Borrelia garinii BgVir]
gi|365193636|gb|AEW68534.1| PrfA [Borrelia garinii BgVir]
Length = 349
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 140/283 (49%), Positives = 206/283 (72%), Gaps = 1/283 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +E+ +++ L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 57 ILEKEDQQEMKELIKQEIIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 116
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS++K WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 117 ALFANNLYSMYIKYSERKKWKTEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRV 176
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 177 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 236
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 237 ITHMPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 296
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L ++
Sbjct: 297 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDPLLDPLTIE 338
>gi|126739408|ref|ZP_01755101.1| peptide chain release factor 1 [Roseobacter sp. SK209-2-6]
gi|126719508|gb|EBA16217.1| peptide chain release factor 1 [Roseobacter sp. SK209-2-6]
Length = 351
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 213/302 (70%), Gaps = 8/302 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
SE++ ++I + L+ + E D DM ++A EE+ + L +LLP
Sbjct: 38 SEIKPVAEQICAYRQLLADLEEAEVMLADPDMKELAEEEIPTLKAALPDAEHALQLALLP 97
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
KD AD R +LE+R GTGG+EASLFA D+ +MY+RY++ +GWKFEV+ ++L G KE
Sbjct: 98 KDAADTRPAMLEIRPGTGGDEASLFAGDLLRMYQRYAEARGWKFEVIEEQATELGGIKEV 157
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
I G V+ ++K+ESG+HRVQRVP+TE GR+HTSA +VA+LP+A++VD+ + DLR
Sbjct: 158 VVHIKGENVFARMKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDIHIDANDLR 217
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
IDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL +LY++ER
Sbjct: 218 IDTMRSSGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQHRNREIAMQVLKTRLYDLER 276
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
RI RS R+ Q+GSGDRSERIRTYNFPQGR++DHR+ +T + + +M+G +LD ID
Sbjct: 277 QRIDSERSADRASQVGSGDRSERIRTYNFPQGRMSDHRINLTLYKLDQIMQG-DLDEIID 335
Query: 405 AL 406
AL
Sbjct: 336 AL 337
>gi|333980787|ref|YP_004518732.1| peptide chain release factor 1 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333824268|gb|AEG16931.1| Peptide chain release factor 1 [Desulfotomaculum kuznetsovii DSM
6115]
Length = 357
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 162/342 (47%), Positives = 228/342 (66%), Gaps = 10/342 (2%)
Query: 71 AIERRSACLENLVNQPE-----ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++E+R L NL+ PE + +Y KA+ EL ++ + + E + ++I K
Sbjct: 7 SLEQRYEELSNLIADPEVINDRSRWQQYVKAHAELEEI---VEVYREYKKVCRDIREAKE 63
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E E D ++ EL +++ L+ L LLP+D DE++ I+E+RAGTGGEE
Sbjct: 64 LLREKLE-PDFRELVETELEAQEEKKGELEHKLKVLLLPRDPNDEKNVIMEIRAGTGGEE 122
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+F+MY RY++++GWK +++ + +DL G KE I G G Y KLKFESG+HR
Sbjct: 123 AALFAADLFRMYTRYAERQGWKIDLMNTSYTDLGGIKEVIFLIEGRGAYSKLKFESGVHR 182
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE GR+HTSA +VA+LP+A+EVDV + DLRID + S G GGQ NTT SAV
Sbjct: 183 VQRVPTTESGGRIHTSAATVAVLPEAEEVDVEINPNDLRIDVFCSTGPGGQSVNTTQSAV 242
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +S QDE+SQH NK KA++VL A+L + + + R +G+GDRS
Sbjct: 243 RITHLPTGIVVSCQDEKSQHKNKEKAMRVLRARLLDRLQEEQQQKIASARRSMVGTGDRS 302
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
ERIRTYNFPQ RVTDHR+G+T H + +++ GE LD IDAL+
Sbjct: 303 ERIRTYNFPQNRVTDHRIGLTIHRLEEVLMGE-LDEIIDALV 343
>gi|452944167|ref|YP_007500332.1| peptide chain release factor 1 [Hydrogenobaculum sp. HO]
gi|452882585|gb|AGG15289.1| peptide chain release factor 1 [Hydrogenobaculum sp. HO]
Length = 356
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/359 (45%), Positives = 238/359 (66%), Gaps = 16/359 (4%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
I+ +EQ+ L E + A L+ Y +K+L++L L + K+I+
Sbjct: 10 IQDIEQKYLQTEEKLASLD-----ITKDADTYKALSKDLKELSYIHELYKDYNKILKDIE 64
Query: 122 GLKSLIYECSEDKDMLDMATEEL-CLAIDEEKRLQSL--LLKSLLPKDDADERDCILEVR 178
K L+ +DKD+ ++A +EL L I K LQ L+ L PKD D ++ ILE+R
Sbjct: 65 DTKELL----KDKDLRELAEKELENLNI---KLLQKEKELINVLTPKDANDSKNVILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AG GGEEA+LFA D+ +MY+RY+++KGWKF ++ ++ L GYKE +I G VY LK
Sbjct: 118 AGAGGEEAALFAADLLRMYQRYAERKGWKFNILEANKTGLGGYKEVIVSIEGKNVYSHLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
+ESG+HRVQRVP+TE GR+HTS ++VA+LP+ADE +V + +DLRI+T+R+ G+GGQ+
Sbjct: 178 YESGVHRVQRVPITESGGRIHTSTITVAVLPEADETEVIINPQDLRIETFRASGAGGQYV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT SAVR+THIPTG++IS QDERSQ NK KA+++L A+L + + K R EQ
Sbjct: 238 NTTESAVRITHIPTGISISCQDERSQLQNKLKAMRILYARLKDFYEKQKKEETDKERKEQ 297
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+G+G+RSE+IRTYNF Q RVTDHR+ +T H + D+++G +LD I AL ++ + +AS
Sbjct: 298 VGTGERSEKIRTYNFSQNRVTDHRINLTLHKLQDVLDG-DLDDIISALQAKELEEKLAS 355
>gi|254511294|ref|ZP_05123361.1| peptide chain release factor 1 [Rhodobacteraceae bacterium KLH11]
gi|221535005|gb|EEE37993.1| peptide chain release factor 1 [Rhodobacteraceae bacterium KLH11]
Length = 357
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/302 (49%), Positives = 216/302 (71%), Gaps = 8/302 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+L+ +I G + L+ + +E D DM ++A EE+ + L +LLP
Sbjct: 44 SDLKPVVDQILGWRQLVADLAEAEAMLSDPDMKELAEEEIPQLQARIPEAEHALQLALLP 103
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
+D AD R +LE+R GTGG+EA+LFA D+ +MY+RY++ +GW+FE++ SDL G KE
Sbjct: 104 RDAADARPAMLEIRPGTGGDEAALFAGDLLRMYQRYAEGRGWQFEIIEEQASDLGGIKEV 163
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A I G V+ ++K+ESG+HRVQRVP TE GR+HTSA +VA+LP+A++VD+++ D+R
Sbjct: 164 VAHIKGDNVFARMKYESGVHRVQRVPETESGGRIHTSAATVAVLPEAEDVDIQIDANDIR 223
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
IDT RS G+GGQH NTT+SAVR+TH+P+G+ ++ E+SQH N+ A++VL +LY++ER
Sbjct: 224 IDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-SSEKSQHRNREIAMQVLKTRLYDLER 282
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
RI +RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +M+G +LD ID
Sbjct: 283 QRIDSARSADRASQVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDQVMQG-DLDEVID 341
Query: 405 AL 406
AL
Sbjct: 342 AL 343
>gi|332558342|ref|ZP_08412664.1| peptide chain release factor 1 [Rhodobacter sphaeroides WS8N]
gi|332276054|gb|EGJ21369.1| peptide chain release factor 1 [Rhodobacter sphaeroides WS8N]
Length = 351
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/304 (51%), Positives = 217/304 (71%), Gaps = 12/304 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL--------QSLLLKSL 162
+EL+ EI ++ + + +E + ML E LA DE L Q+L L +L
Sbjct: 38 AELKPVVAEISAYRTALEDLAEAEAMLS-DPEMRALAEDEIPALRARIPGMEQALRL-AL 95
Query: 163 LPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222
LPKD AD R ILE+R GTGGEEA+LFA D+ +MY+RY++ +GW+FE++ + S+L G +
Sbjct: 96 LPKDAADARPAILEIRPGTGGEEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIR 155
Query: 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED 282
EA+A I G G + +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D
Sbjct: 156 EATARIEGEGAFARLKYESGVHRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAAD 215
Query: 283 LRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM 342
+RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY++
Sbjct: 216 IRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIIVT-SSEKSQHRNREIAMQVLRARLYDL 274
Query: 343 ERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF 402
ER R+ +RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T +A+ +M G +L
Sbjct: 275 ERQRLADARSADRKAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYALPQIMAG-DLSEV 333
Query: 403 IDAL 406
I AL
Sbjct: 334 ISAL 337
>gi|420485110|ref|ZP_14983728.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4]
gi|420515601|ref|ZP_15014064.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4c]
gi|420517302|ref|ZP_15015757.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4d]
gi|393103245|gb|EJC03808.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4]
gi|393123900|gb|EJC24368.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4c]
gi|393125116|gb|EJC25582.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4d]
Length = 352
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 224/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|302342174|ref|YP_003806703.1| peptide chain release factor 1 [Desulfarculus baarsii DSM 2075]
gi|301638787|gb|ADK84109.1| peptide chain release factor 1 [Desulfarculus baarsii DSM 2075]
Length = 361
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/368 (45%), Positives = 245/368 (66%), Gaps = 19/368 (5%)
Query: 57 LSNDL---IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+S DL ++ +E R A+ER A + NQ + K +KE +L +
Sbjct: 3 MSPDLKARLEEVEARFNAVERELADPNIVANQ-----ENFMKRSKEHAELSQLVECFRSY 57
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA----IDEEKRLQSLLLKSLLPKDDAD 169
++E++ + L+ +D+++ +A E+ A +D E+R++ LLL P+D D
Sbjct: 58 NKYEQELEQNRLLM--ADDDEELAALAGVEVEQAETALVDLEQRMRLLLL----PQDPRD 111
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E++ +LE+RAGTGG+EA+LFA ++ +MY RY++ K WK E++ ++ G+KE A I+
Sbjct: 112 EKNVVLEIRAGTGGDEAALFAAELLRMYLRYAELKRWKTEILSQHPTNAGGFKEVIALIT 171
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G G Y +LK+ESG HRVQRVP TE GRVHTSAV+VA+LP+ADEV+V ++ E+LRID +R
Sbjct: 172 GRGAYSQLKYESGAHRVQRVPATESQGRVHTSAVTVAVLPEADEVEVDIKPEELRIDYFR 231
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
S G GGQH NTT+SAVR+TH+PTG+ +S QDE+SQH NKAKALKVL A+L E
Sbjct: 232 SSGPGGQHVNTTDSAVRITHLPTGLVVSCQDEKSQHKNKAKALKVLAARLLEKMEQEQQA 291
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
+ + R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T + + +++ GE L++ I L+
Sbjct: 292 ALAANRRSQVGSGDRSERIRTYNFPQGRVTDHRIGLTIYKLEEVLVGE-LELIIPHLVAY 350
Query: 410 QEMDAIAS 417
+ +A+ S
Sbjct: 351 FQAEALKS 358
>gi|227824241|ref|ZP_03989073.1| peptide chain release factor [Acidaminococcus sp. D21]
gi|352683945|ref|YP_004895929.1| peptide chain release factor [Acidaminococcus intestini RyC-MR95]
gi|226904740|gb|EEH90658.1| peptide chain release factor [Acidaminococcus sp. D21]
gi|350278599|gb|AEQ21789.1| peptide chain release factor [Acidaminococcus intestini RyC-MR95]
Length = 359
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/350 (46%), Positives = 233/350 (66%), Gaps = 11/350 (3%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+E R LE ++ P + A++ K K KL D + + QK D ++
Sbjct: 7 KLQALEDRYIDLEAKISDPSVISDQAQWQKYTKAHAKLTDVVETYRAYQKLQKTYDDDQA 66
Query: 126 LIYECSEDKD---MLDMATEELCLAI-DEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ D++ M +M +EL + D EKRL LLL PKD DE++ I+E+RAG
Sbjct: 67 LLEMGESDEELAAMAEMEMKELAPQLEDYEKRLTILLL----PKDPNDEKNIIMEIRAGA 122
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MY RY++ KGW+ E++ + + L G+KE +SG VY +KFES
Sbjct: 123 GGDEAALFAGDLFRMYTRYAETKGWRVELMDSSPTGLGGFKEVIFMVSGSDVYSHMKFES 182
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTS +VA++P+A+EVDV ++ D+RIDTYR+GG+GGQ+ N T
Sbjct: 183 GVHRVQRVPETEAQGRIHTSTATVAVMPEAEEVDVDIKMSDIRIDTYRAGGAGGQYVNKT 242
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
SAVR+THIPTG+ QDE+SQ N+ K L+VL +++YE + + R Q+G+
Sbjct: 243 ESAVRMTHIPTGIVAQCQDEKSQAKNREKCLRVLRSRIYEAAQEAQRAAEESERRSQVGT 302
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
GDRSERIRTYNFPQGRVTDHR+G+T H ++D+M G +LD + AL+ +++
Sbjct: 303 GDRSERIRTYNFPQGRVTDHRIGLTLHKLTDVMNG-DLDELLGALMTEEQ 351
>gi|377831957|ref|ZP_09814921.1| peptide chain release factor RF1 [Lactobacillus mucosae LM1]
gi|377553964|gb|EHT15679.1| peptide chain release factor RF1 [Lactobacillus mucosae LM1]
Length = 362
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 236/343 (68%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADTARFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ + + + L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLREI-DDPDLTAMTKDEIASSKERQATLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GWK EVV E+++ G+KE S I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYDMYLRYAEKQGWKVEVVDKNETEVGGFKEISLLITGDKVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++V++ + +D+R D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVEIDIDPKDIRTDVYRSSGAGGQHINKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L A++Y+ + + + + R + IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKARVYDYYQQKEQNAYDQKRKDAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M G +LD I+AL++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAG-DLDEIIEALII 349
>gi|421077196|ref|ZP_15538167.1| Peptide chain release factor 1 [Pelosinus fermentans JBW45]
gi|392524584|gb|EIW47739.1| Peptide chain release factor 1 [Pelosinus fermentans JBW45]
Length = 355
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/347 (46%), Positives = 225/347 (64%), Gaps = 8/347 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R LENL++ P A+ AE+ K K KL + ++++ R ++ G
Sbjct: 1 MLDKLQAIEDRQLELENLISDPSVIANMAEWQKHTKAHSKL---LPIVAKFREYKEVQQG 57
Query: 123 LKSLIYECSE--DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+ + ++ D D M T EL + + L L LLPKD DE+ I+E+R G
Sbjct: 58 IADTLEMLNDKLDSDFRQMVTAELSDLKAQNEVLSEELRILLLPKDPNDEKSVIVEIRGG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GG+EA+LFA D+F+MY RY++ +GW+ E++ DL G+KE I G G Y +LKFE
Sbjct: 118 AGGDEAALFAGDLFRMYTRYAETQGWRTELLDANAPDLGGFKEVVFTIDGDGAYSRLKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTS V+VA+LP+A+EVDV + DLRIDTY + G+GGQH N
Sbjct: 178 SGVHRVQRVPTTESGGRIHTSTVTVAVLPEAEEVDVVINQNDLRIDTYCASGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T SAVR+ H+PTG+ + QDE+SQ NK KA++VL AK+ E ++ R Q+G
Sbjct: 238 TESAVRIVHLPTGIVVQCQDEKSQLKNKDKAMRVLRAKVLEKAEEEHRAELAETRKSQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+GDRSERIRTYNFPQGRVTDHR+G+T H + ++ G ++D I+AL+
Sbjct: 298 TGDRSERIRTYNFPQGRVTDHRIGLTLHKLDFVLNG-DIDEIINALI 343
>gi|340361634|ref|ZP_08684052.1| peptide chain release factor RF1 [Neisseria macacae ATCC 33926]
gi|419798872|ref|ZP_14324259.1| peptide chain release factor 1 [Neisseria sicca VK64]
gi|339888384|gb|EGQ77849.1| peptide chain release factor RF1 [Neisseria macacae ATCC 33926]
gi|385693459|gb|EIG24106.1| peptide chain release factor 1 [Neisseria sicca VK64]
Length = 358
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|298369801|ref|ZP_06981117.1| peptide chain release factor 1 [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281261|gb|EFI22750.1| peptide chain release factor 1 [Neisseria sp. oral taxon 014 str.
F0314]
Length = 358
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|381404795|ref|ZP_09929479.1| peptide chain release factor 1 [Pantoea sp. Sc1]
gi|380737994|gb|EIB99057.1| peptide chain release factor 1 [Pantoea sp. Sc1]
Length = 360
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 224/328 (68%), Gaps = 13/328 (3%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY++ R RD + ++ T Q+ +D D +M DMA EEL A ++
Sbjct: 41 EYAQLTDVTRCFRDWQQVQEDIETAQQMLD-----------DPEMRDMAQEELQAAREKG 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L+ L LLPKD DER C +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E+V
Sbjct: 90 ETLEQQLQVLLLPKDPDDERACFVEVRAGTGGDEAAIFAGDLFRMYSRYAEGRRWRVEIV 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ + GYKE A ++G G YG++KFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANDGEHGGYKEVIARVTGEGAYGRMKFESGGHRVQRVPETESQGRIHTSACTVAVMPEI 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAK
Sbjct: 210 PEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
AL VL A+++ E +R H + + R +GSGDRS+RIRTYNFPQGRVTDHR+ +T + +
Sbjct: 270 ALAVLGARIHAAEMARRHAAEASTRRNLLGSGDRSDRIRTYNFPQGRVTDHRINLTIYRL 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASF 418
++MEG+ +D I+ ++ + + D +A+
Sbjct: 330 DEVMEGK-IDSLIEPIVQEYQADQLAAL 356
>gi|349609150|ref|ZP_08888558.1| peptide chain release factor 1 [Neisseria sp. GT4A_CT1]
gi|348612987|gb|EGY62589.1| peptide chain release factor 1 [Neisseria sp. GT4A_CT1]
Length = 358
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQQAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHSNKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|227514467|ref|ZP_03944516.1| peptide chain release factor RF1 [Lactobacillus fermentum ATCC
14931]
gi|385812049|ref|YP_005848440.1| peptide chain release factor 1 (RF-1) [Lactobacillus fermentum CECT
5716]
gi|227087153|gb|EEI22465.1| peptide chain release factor RF1 [Lactobacillus fermentum ATCC
14931]
gi|299782948|gb|ADJ40946.1| Peptide chain release factor 1 (RF-1) [Lactobacillus fermentum CECT
5716]
Length = 362
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 233/343 (67%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDTE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E S D D+++M EEL A + + +LQ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLREES-DPDLVEMTKEELNEAKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GW EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P TE +GRVHTS +V ++P+A++VDV L +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L A++Y+ + + R IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDYYQQQEQSEYDAQRKNAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M G +L+ I++L++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAG-DLEEIIESLII 349
>gi|84516322|ref|ZP_01003682.1| peptide chain release factor 1 [Loktanella vestfoldensis SKA53]
gi|84510018|gb|EAQ06475.1| peptide chain release factor 1 [Loktanella vestfoldensis SKA53]
Length = 351
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/317 (48%), Positives = 219/317 (69%), Gaps = 10/317 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS-------LL 163
+ELR + K L+ + + + +L E LA DE L++ L S LL
Sbjct: 38 AELRPVVDTVTAYKDLLAQMIDTQALLK-DPEMRALAEDELPELKAALAASEHAVQLALL 96
Query: 164 PKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKE 223
PKD AD R +LE+R GTGG+EASLFA D+ +MY+RY++ GW+FE++ ++++L G KE
Sbjct: 97 PKDAADARPALLEIRPGTGGDEASLFAGDLLRMYQRYAENMGWRFEILEQSQTELGGIKE 156
Query: 224 ASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDL 283
A ++G GV+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A +VD+++ DL
Sbjct: 157 VVARVAGEGVFARLKYESGVHRVQRVPETESGGRIHTSAATVAVLPEAQDVDIQINPNDL 216
Query: 284 RIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEME 343
RIDT R+ GSGGQH NTT+SAVR+ HIPTG+ I + E+SQH N+ A++VL +L+++E
Sbjct: 217 RIDTMRASGSGGQHVNTTDSAVRILHIPTGL-IVVSAEKSQHRNREIAMQVLKTRLFDLE 275
Query: 344 RSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFI 403
R RI RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T +++ +M G +LD I
Sbjct: 276 RQRIDGERSADRKAQVGSGDRSERIRTYNFPQGRLTDHRINLTLYSLGQVMAG-DLDTII 334
Query: 404 DALLLQQEMDAIASFGS 420
DAL + + +A G+
Sbjct: 335 DALQSEAQAALLAEMGA 351
>gi|304386835|ref|ZP_07369099.1| peptide chain release factor RF1 [Neisseria meningitidis ATCC
13091]
gi|304339089|gb|EFM05179.1| peptide chain release factor RF1 [Neisseria meningitidis ATCC
13091]
Length = 358
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TNALIAEHQAELLAAMG 357
>gi|32267276|ref|NP_861308.1| peptide chain release factor 1 [Helicobacter hepaticus ATCC 51449]
gi|46576742|sp|Q7VFA0.1|RF1_HELHP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|32263329|gb|AAP78374.1| peptide chain release factor 1 [Helicobacter hepaticus ATCC 51449]
Length = 355
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/287 (50%), Positives = 203/287 (70%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
EDK++ ++A EEL + L+ + L+PKD D ++ LE+RAGTGG+EA +F
Sbjct: 67 EDKELGELAKEELKDLESAKATLEEEIKLLLIPKDPNDNKNIYLEIRAGTGGDEAGIFVG 126
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+FK Y RY+ + WK E++ E+++ GYKE A + G G Y KLKFE G HRVQRVP
Sbjct: 127 DLFKAYCRYADLQKWKVEIISSNENNVGGYKEVIALVKGNGAYSKLKFEGGTHRVQRVPE 186
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA++VAI+P+ D+V++ + DL+ID +RSGG GGQ NTT+SAVR+THIP
Sbjct: 187 TESQGRIHTSAITVAIMPEVDDVEININPNDLKIDVFRSGGHGGQSVNTTDSAVRITHIP 246
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+++S+QDE+SQH NK KALK+L A+LYE E + + R Q+GSGDRSERIRTY
Sbjct: 247 TGISVSMQDEKSQHKNKDKALKILKARLYEAELEAQNAQNKEARKTQVGSGDRSERIRTY 306
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
N+PQ R+TDHR+G+T +++ ++M G LD FI+ L+ + A+ +
Sbjct: 307 NYPQNRLTDHRIGLTLYSLEEIMLGGLLDEFINPLIAHAQSQAMGNI 353
>gi|420500531|ref|ZP_14999077.1| peptide chain release factor 1 [Helicobacter pylori Hp P-30]
gi|393152298|gb|EJC52599.1| peptide chain release factor 1 [Helicobacter pylori Hp P-30]
Length = 352
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|296101959|ref|YP_003612105.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392979476|ref|YP_006478064.1| peptide chain release factor 1 [Enterobacter cloacae subsp.
dissolvens SDM]
gi|295056418|gb|ADF61156.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392325409|gb|AFM60362.1| peptide chain release factor 1 [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 360
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWQQVQEDIETAQMML----DDPEMREMAQEELQDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|70732476|ref|YP_262238.1| peptide chain release factor 1 [Pseudomonas protegens Pf-5]
gi|119361580|sp|Q4K695.1|RF1_PSEF5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|68346775|gb|AAY94381.1| peptide chain release factor 1 [Pseudomonas protegens Pf-5]
Length = 360
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/330 (45%), Positives = 228/330 (69%), Gaps = 4/330 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE ++ + ++ Q +++G ++L+ + D D+ +MA EE+ A ++
Sbjct: 33 AKFRAYSKEYAEVEPIVATYKQVLKVQADLEGAQALLKD--NDPDLREMAAEEVREAKEQ 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LAELESSLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGESVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKA 329
DE + + + DLRIDTYRS G+GGQH N T+SA+R+THIP+G+ + Q+ERSQH N+A
Sbjct: 211 PDEQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHIPSGIVVECQEERSQHKNRA 270
Query: 330 KALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHA 389
+A+ L AKL + + S + + R +GSGDRSERIRTYNFPQGRVTDHR+ +T ++
Sbjct: 271 RAMSWLSAKLNDQQTSAAANAIASERKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYS 330
Query: 390 ISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+ +++ G ++ I+ LL + + D +A+ G
Sbjct: 331 LDEILAG-GVEAVIEPLLAEYQADQLAALG 359
>gi|221639323|ref|YP_002525585.1| peptide chain release factor 1 [Rhodobacter sphaeroides KD131]
gi|254790895|sp|B9KST8.1|RF1_RHOSK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|221160104|gb|ACM01084.1| Peptide chain release factor 1 [Rhodobacter sphaeroides KD131]
Length = 351
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/304 (51%), Positives = 217/304 (71%), Gaps = 12/304 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL--------QSLLLKSL 162
+EL+ EI ++ + + +E + ML E LA DE L Q+L L +L
Sbjct: 38 AELKPVVVEISAYRTALEDLAEAEAMLS-DPEMRALAEDEIPALRARIPGMEQALRL-AL 95
Query: 163 LPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222
LPKD AD R ILE+R GTGGEEA+LFA D+ +MY+RY++ +GW+FE++ + S+L G +
Sbjct: 96 LPKDAADARPAILEIRPGTGGEEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIR 155
Query: 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED 282
EA+A + G G + +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D
Sbjct: 156 EATARVEGEGAFARLKYESGVHRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAAD 215
Query: 283 LRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM 342
LRIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY++
Sbjct: 216 LRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIIVT-SSEKSQHRNREIAMQVLRARLYDL 274
Query: 343 ERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF 402
ER R+ +RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T +A+ +M G +L
Sbjct: 275 ERQRLADARSADRKAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYALPQIMAG-DLSEV 333
Query: 403 IDAL 406
I AL
Sbjct: 334 ISAL 337
>gi|218768706|ref|YP_002343218.1| peptide chain release factor 1 [Neisseria meningitidis Z2491]
gi|421559739|ref|ZP_16005608.1| peptide chain release factor 1 [Neisseria meningitidis 92045]
gi|20139350|sp|Q9JT75.1|RF1_NEIMA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|121052714|emb|CAM09057.1| peptide chain release factor I [Neisseria meningitidis Z2491]
gi|402334738|gb|EJU70017.1| peptide chain release factor 1 [Neisseria meningitidis 92045]
Length = 358
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TNALIAEHQAELLAAMG 357
>gi|420421457|ref|ZP_14920535.1| peptide chain release factor 1 [Helicobacter pylori NQ4110]
gi|393037975|gb|EJB39009.1| peptide chain release factor 1 [Helicobacter pylori NQ4110]
Length = 352
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|254787712|ref|YP_003075141.1| peptide chain release factor 1 [Teredinibacter turnerae T7901]
gi|259585256|sp|C5BSZ6.1|RF1_TERTT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|237684441|gb|ACR11705.1| peptide chain release factor 1 [Teredinibacter turnerae T7901]
Length = 360
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/342 (46%), Positives = 227/342 (66%), Gaps = 6/342 (1%)
Query: 82 LVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ P+ A ++ KE +L + E RT + I K L+ + D DM +M
Sbjct: 22 LLGDPDIIADQKKFRDLGKEYSELEPVVICYQEYRTVIENIAEAKMLMNDG--DADMREM 79
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EEL A + + L++ L K LLPKD DE++ LE+RAGTGG+EA++F+ D+F+MY R
Sbjct: 80 AQEELKTAEAQLEPLETQLQKLLLPKDPNDEKNVFLEIRAGTGGDEAAIFSGDLFRMYSR 139
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+++ GW+ E++ + GYKE + G GVY +LKFESG HRVQRVP TE GR+H
Sbjct: 140 YAERAGWRIEIISENAGEHGGYKELITRVVGQGVYSQLKFESGAHRVQRVPETESQGRIH 199
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VAI+P+ADE +V L DLRIDT+R+ G+GGQH N T+SA+R+THIPTG+ +
Sbjct: 200 TSACTVAIMPEADESEEVELNKGDLRIDTFRASGAGGQHVNKTDSAIRITHIPTGIVVEC 259
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QDERSQH N+AKA+ +L A++ + + ++ R +GSGDRSERIRTYN+PQGRV
Sbjct: 260 QDERSQHKNRAKAMSLLAARINSAQAEQFAAEQASERKSLVGSGDRSERIRTYNYPQGRV 319
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TDHR+ +T + + ++MEG +LD I L+ + + D +A+ +
Sbjct: 320 TDHRINLTLYKLDEIMEG-SLDEVIQPLVNEHQADQLAALAN 360
>gi|312795903|ref|YP_004028825.1| peptide chain release factor 1 (RF-1) [Burkholderia rhizoxinica HKI
454]
gi|312167678|emb|CBW74681.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Burkholderia
rhizoxinica HKI 454]
Length = 365
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/288 (51%), Positives = 205/288 (71%), Gaps = 2/288 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +EL A ++L+ L K LLPKD DER+ +E+RAGTGG+E++LFA D
Sbjct: 76 DPSMRDFAEDELNTARSRMEQLERDLQKMLLPKDPNDERNIFVEIRAGTGGDESALFAGD 135
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY+++ W+ E++ + SDL GYKE I G G Y +LKFESG HRVQRVP T
Sbjct: 136 LLRMYLRYAERHRWQVEMMSESASDLGGYKEVIVRIIGQGAYSRLKFESGGHRVQRVPAT 195
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ ++ L DLRIDT+R+ G+GGQH N T+SAVR+TH+P
Sbjct: 196 ETQGRIHTSACTVAVMPEADEIAEIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLP 255
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + QD+RSQH NK +A+KVL A++ + + H + R +GSGDRSERIRTY
Sbjct: 256 TGIVVECQDDRSQHKNKDRAMKVLAARIKDKQYQEQHAKEAATRKSLVGSGDRSERIRTY 315
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
NFPQGR+TDHR+ +T + + MM+G +LD IDAL+ + + + +A+ G
Sbjct: 316 NFPQGRLTDHRINVTLYKLEQMMDG-DLDALIDALVSEHQAELLAAMG 362
>gi|94500021|ref|ZP_01306556.1| peptide chain release factor 1 [Bermanella marisrubri]
gi|94427879|gb|EAT12854.1| peptide chain release factor 1 [Oceanobacter sp. RED65]
Length = 363
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/290 (50%), Positives = 208/290 (71%), Gaps = 2/290 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM +M EE A +E +RL L LLPKD D ++ ILE+RAGTGG+EA++F+
Sbjct: 72 DDPDMREMGQEEYSAAKEEIERLDGELQILLLPKDPNDGKNVILEIRAGTGGDEAAIFSG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++K+GWK EV+ E + GYKE I+G GVYG+LKFESG HRVQRVP
Sbjct: 132 DLFRMYTRYAEKRGWKCEVMSANEGEHGGYKEVITRIAGDGVYGQLKFESGAHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQ-ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ +E DV + DLRIDT+R+ G+GGQH N T+SA+R+TH+
Sbjct: 192 TESQGRIHTSACTVAVMPEIENEDDVDINKADLRIDTFRASGAGGQHVNKTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + Q+ERSQH N+AKA+ +L +L + + ++ R +GSGDRSERIRT
Sbjct: 252 PTGLVVECQEERSQHKNRAKAMSILATRLNDAVVQKAQAEQAAERKSLVGSGDRSERIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
YN+PQGRV+DHR+ +T + + ++M+G ++D+ I LL + + + +AS G+
Sbjct: 312 YNYPQGRVSDHRINLTVYKLDELMQG-DVDMIIQPLLQEHQAELLASMGT 360
>gi|167838055|ref|ZP_02464914.1| peptide chain release factor 1 [Burkholderia thailandensis MSMB43]
gi|424907173|ref|ZP_18330664.1| peptide chain release factor 1 [Burkholderia thailandensis MSMB43]
gi|390927530|gb|EIP84939.1| peptide chain release factor 1 [Burkholderia thailandensis MSMB43]
Length = 360
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/295 (51%), Positives = 207/295 (70%), Gaps = 2/295 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +EL A D RL + L LLPKD DER+ +E+RAGTGG+E++L
Sbjct: 67 ELLADASMRDFAEDELRGARDRMSRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 247 THIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
IRTYNFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G +
Sbjct: 307 IRTYNFPQGRMTDHRINLTLYKLEQIMDG-DLDELIAALVSEHQAELLASLGDAE 360
>gi|78187994|ref|YP_378332.1| peptide chain release factor 1 [Chlorobium chlorochromatii CaD3]
gi|119361520|sp|Q3AUE2.1|RF1_CHLCH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|78170193|gb|ABB27289.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium
chlorochromatii CaD3]
Length = 357
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/356 (44%), Positives = 238/356 (66%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AI+ + LE ++ P + + + K N+E LR+ + + K E++
Sbjct: 1 MLDKLQAIKEKHLDLEQALSDPSLANDQERFRKLNREYSNLREVVQAFDAYQRKATELEA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ S D +M +A E+ + L+ L LLPK++AD R+ I+E+RAGTG
Sbjct: 61 AQHLLATES-DTEMKALAEAEVDELQETVAELEQGLKILLLPKEEADSRNVIIEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFES 241
G+EASLFA D+ +MY+RY+++KGW+++V+ ES + G +KE ISG V+G +K+ES
Sbjct: 120 GDEASLFAADLTRMYQRYAEQKGWQYKVLDYNESSVPGGFKEMILEISGNNVFGTMKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSAVSVA+LP+A+EVDV +R +DLR DTYRSGG GGQ+ N
Sbjct: 180 GVHRVQRVPDTEAQGRIHTSAVSVAVLPEAEEVDVEIRRDDLRFDTYRSGGKGGQNVNKV 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+AVR+TH+PTG+ + Q+ERSQ NK +A+++L KLY+++ + R+ LR + +
Sbjct: 240 ETAVRITHMPTGIVAACQEERSQLQNKERAMQMLRTKLYDIQLAEQQQQRADLRRTMVAT 299
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
GDRS +IRTYN+PQ RVTDHR+G T HA+ +M+GE L I+AL++ + + + S
Sbjct: 300 GDRSAKIRTYNYPQSRVTDHRIGFTSHALPQIMQGE-LHEVIEALIMHDQAERLKS 354
>gi|419837892|ref|ZP_14361330.1| peptide chain release factor 1 [Vibrio cholerae HC-46B1]
gi|421343895|ref|ZP_15794298.1| peptide chain release factor 1 [Vibrio cholerae HC-43B1]
gi|421354836|ref|ZP_15805168.1| peptide chain release factor 1 [Vibrio cholerae HE-45]
gi|423735847|ref|ZP_17709041.1| peptide chain release factor 1 [Vibrio cholerae HC-41B1]
gi|424010185|ref|ZP_17753119.1| peptide chain release factor 1 [Vibrio cholerae HC-44C1]
gi|395939975|gb|EJH50656.1| peptide chain release factor 1 [Vibrio cholerae HC-43B1]
gi|395953961|gb|EJH64574.1| peptide chain release factor 1 [Vibrio cholerae HE-45]
gi|408629471|gb|EKL02163.1| peptide chain release factor 1 [Vibrio cholerae HC-41B1]
gi|408856440|gb|EKL96135.1| peptide chain release factor 1 [Vibrio cholerae HC-46B1]
gi|408863437|gb|EKM02920.1| peptide chain release factor 1 [Vibrio cholerae HC-44C1]
Length = 362
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/289 (49%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEVPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ ID ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIDPVIHEHQADQLAALA 359
>gi|420436481|ref|ZP_14935474.1| peptide chain release factor 1 [Helicobacter pylori Hp H-28]
gi|420459550|ref|ZP_14958350.1| peptide chain release factor 1 [Helicobacter pylori Hp A-27]
gi|393054792|gb|EJB55716.1| peptide chain release factor 1 [Helicobacter pylori Hp H-28]
gi|393077634|gb|EJB78382.1| peptide chain release factor 1 [Helicobacter pylori Hp A-27]
Length = 352
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|404494363|ref|YP_006718469.1| peptide chain release factor 1 [Pelobacter carbinolicus DSM 2380]
gi|119361572|sp|Q3A129.1|RF1_PELCD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|77546366|gb|ABA89928.1| peptide chain release factor 1 [Pelobacter carbinolicus DSM 2380]
Length = 356
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/348 (45%), Positives = 234/348 (67%), Gaps = 5/348 (1%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R +E L++ P+ + + + +E +L + + E + ++I+G + L+ +
Sbjct: 9 VEDRFREVEGLLSDPQVVSQQKRFLELTREHAELSSVVAVYREYKRVSEDIEGNRELLQD 68
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D +M +MA EL + L L LLPKD D+++ ILE+RAGTGG+EA+LF
Sbjct: 69 S--DPEMREMAKAELPELEAHREELAQQLKVLLLPKDPNDDKNVILEIRAGTGGDEAALF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY R+++ +GWK E + V++S+ G+KE A ISG VY +LK+ESG HRVQRV
Sbjct: 127 AGDLFRMYSRFAEGQGWKVETMSVSDSEAGGFKEIIAMISGNRVYSQLKYESGTHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSA +VA+LP+A++VDV + DLRID YR+ G+GGQH N T SAVR+TH
Sbjct: 187 PETEAQGRIHTSACTVAVLPEAEDVDVDIDPTDLRIDVYRASGAGGQHVNKTESAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ +S QDE+SQH NKAKA+KVL +++ + + + R Q+GSGDRS+RIR
Sbjct: 247 VPTGVVVSCQDEKSQHKNKAKAMKVLKSRILDQVMADQQAQMAADRKSQVGSGDRSQRIR 306
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
TYNFPQGR TDHR+G+T + + +M+G NL ++ L L + +A+A+
Sbjct: 307 TYNFPQGRCTDHRIGLTLYRLEGIMQG-NLSELVEPLTLHYQSEAMAA 353
>gi|420491997|ref|ZP_14990573.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15]
gi|420525764|ref|ZP_15024167.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15b]
gi|393108692|gb|EJC09226.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15]
gi|393133785|gb|EJC34201.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15b]
Length = 352
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFESG HRVQRVP TE GR+HTSA++
Sbjct: 142 RWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFESGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|400754733|ref|YP_006563101.1| peptide chain release factor 1 [Phaeobacter gallaeciensis 2.10]
gi|398653886|gb|AFO87856.1| peptide chain release factor 1 [Phaeobacter gallaeciensis 2.10]
Length = 351
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/315 (47%), Positives = 218/315 (69%), Gaps = 8/315 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+LR ++I + L+ + E D DM ++A EEL + L +LLP
Sbjct: 38 SDLRPVAEQISAYRRLLSDLEEAEQMLADPDMAELAEEELPQLRAALPEAEHALQLALLP 97
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
+D+AD R +LE+R GTGG+EA+LFA D+ +MY+RY++ +GW E++ ++L G KE
Sbjct: 98 RDEADARPAMLEIRPGTGGDEAALFAGDLLRMYQRYAEARGWGIEIIEEQTTELGGLKEV 157
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A + G V+ +LK+ESG+HRVQRVP+TE GR+HTSA +VA+LP+A++VD+R+ DLR
Sbjct: 158 VAHVKGENVFARLKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDLRIDPGDLR 217
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
IDT R+ G+GGQH NTT+SAVR+THIPTG+ I + E+SQH N+ A++V+ +LY++ER
Sbjct: 218 IDTMRASGAGGQHVNTTDSAVRITHIPTGI-IVVSSEKSQHRNREIAMQVMRTRLYDLER 276
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
RI RS R+ Q+GSGDRSERIRTYNFPQGR++DHR+ +T + + +M+G +LD ID
Sbjct: 277 QRIDSERSADRASQVGSGDRSERIRTYNFPQGRMSDHRINLTLYKLDQIMQG-DLDEIID 335
Query: 405 ALLLQQEMDAIASFG 419
AL + +A G
Sbjct: 336 ALTADDQARLLAEMG 350
>gi|220927713|ref|YP_002504622.1| peptide chain release factor 1 [Clostridium cellulolyticum H10]
gi|254790874|sp|B8I562.1|RF1_CLOCE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219998041|gb|ACL74642.1| peptide chain release factor 1 [Clostridium cellulolyticum H10]
Length = 359
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 237/355 (66%), Gaps = 4/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P+ + EY K KE L + + E KEI+
Sbjct: 1 MFDKLQAAEDRYEEISHKLSDPDVINNQDEYKKYMKECSDLEEIVQKYREYTKVTKEIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ E + DKD +M +E A ++ + ++ L ++PKD D+++ I+E+R G G
Sbjct: 61 ARELL-EQTLDKDFREMVQQEFQEAQEKLEVIKRQLKILIVPKDPNDDKNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA +F+ +Y++KK WK+E++ ++L G+KE I G G Y +LKFESG
Sbjct: 120 GEEAALFAGVLFRAMAKYAEKKRWKYEILDSNPTELGGFKEVVFTIEGKGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTS ++VA+LP+ +EVDV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPSDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SA+R+TH+PTG+ +S QDERSQH NK KA+K+L +KLYE+ + + ++ R Q+G+G
Sbjct: 240 SAIRITHMPTGIVVSCQDERSQHKNKDKAMKILRSKLYEIAQEQQINEVAQDRKNQVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
DRSERIRTYN+PQGRVTDHR+ +T + + +++G +LD IDAL+ + + + S
Sbjct: 300 DRSERIRTYNYPQGRVTDHRINLTLYKLEQVLDG-DLDELIDALITTDQSEKLGS 353
>gi|387901185|ref|YP_006331524.1| peptide chain release factor 1 [Burkholderia sp. KJ006]
gi|387576077|gb|AFJ84793.1| Peptide chain release factor 1 [Burkholderia sp. KJ006]
Length = 360
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A EE+ A + RL+ L K LLPKD D+R+ LE+RAGTGG+E++LFA D
Sbjct: 71 DASMRDFAEEEIRSARERMTRLEGELQKMLLPKDPNDDRNIFLEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSERIRTY
Sbjct: 251 TGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSERIRTY 310
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
NFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G
Sbjct: 311 NFPQGRMTDHRINLTLYRLEALMDG-DLDELIGALVSEHQAELLASLG 357
>gi|384895459|ref|YP_005769448.1| peptide chain release factor RF1 [Helicobacter pylori 35A]
gi|315586075|gb|ADU40456.1| peptide chain release factor RF1 [Helicobacter pylori 35A]
Length = 352
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 234/347 (67%), Gaps = 8/347 (2%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I+ Q++ +I +R L L+ S AE K+L +L I E+ KE +
Sbjct: 3 ILAQKLSSILKRYDELTALL-----SSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSV 57
Query: 124 KSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
I E E DK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+RAG
Sbjct: 58 LENIKENKELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE
Sbjct: 118 TGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
+G HRVQRVP TE GR+HTSA++VAI+P+ D+V++ + DL+I+ +R+GG GGQ NT
Sbjct: 178 AGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNT 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+TH+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+G
Sbjct: 238 TDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SGDRSERIRTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 298 SGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|22126175|ref|NP_669598.1| peptide chain release factor 1 [Yersinia pestis KIM10+]
gi|45441669|ref|NP_993208.1| peptide chain release factor 1 [Yersinia pestis biovar Microtus
str. 91001]
gi|108807397|ref|YP_651313.1| peptide chain release factor 1 [Yersinia pestis Antiqua]
gi|108811662|ref|YP_647429.1| peptide chain release factor 1 [Yersinia pestis Nepal516]
gi|145598396|ref|YP_001162472.1| peptide chain release factor 1 [Yersinia pestis Pestoides F]
gi|149366051|ref|ZP_01888086.1| peptide chain release factor 1 [Yersinia pestis CA88-4125]
gi|153947351|ref|YP_001401039.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP
31758]
gi|162421626|ref|YP_001606878.1| peptide chain release factor 1 [Yersinia pestis Angola]
gi|165926418|ref|ZP_02222250.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165938830|ref|ZP_02227384.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009117|ref|ZP_02230015.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166210440|ref|ZP_02236475.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167401373|ref|ZP_02306870.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167420420|ref|ZP_02312173.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167424382|ref|ZP_02316135.1| peptide chain release factor 1 [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|170024410|ref|YP_001720915.1| peptide chain release factor 1 [Yersinia pseudotuberculosis YPIII]
gi|186895374|ref|YP_001872486.1| peptide chain release factor 1 [Yersinia pseudotuberculosis PB1/+]
gi|218929128|ref|YP_002347003.1| peptide chain release factor 1 [Yersinia pestis CO92]
gi|229894728|ref|ZP_04509908.1| peptide chain release factor RF-1 [Yersinia pestis Pestoides A]
gi|229897428|ref|ZP_04512584.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229898071|ref|ZP_04513222.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901940|ref|ZP_04517061.1| peptide chain release factor RF-1 [Yersinia pestis Nepal516]
gi|270490877|ref|ZP_06207951.1| peptide chain release factor 1 [Yersinia pestis KIM D27]
gi|294503912|ref|YP_003567974.1| peptide chain release factor 1 [Yersinia pestis Z176003]
gi|384122371|ref|YP_005504991.1| peptide chain release factor 1 [Yersinia pestis D106004]
gi|384126230|ref|YP_005508844.1| peptide chain release factor 1 [Yersinia pestis D182038]
gi|384140155|ref|YP_005522857.1| peptide chain release factor 1 [Yersinia pestis A1122]
gi|384414801|ref|YP_005624163.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420546884|ref|ZP_15044827.1| peptide chain release factor 1 [Yersinia pestis PY-01]
gi|420552212|ref|ZP_15049589.1| peptide chain release factor 1 [Yersinia pestis PY-02]
gi|420557724|ref|ZP_15054439.1| peptide chain release factor 1 [Yersinia pestis PY-03]
gi|420563234|ref|ZP_15059309.1| peptide chain release factor 1 [Yersinia pestis PY-04]
gi|420568276|ref|ZP_15063887.1| peptide chain release factor 1 [Yersinia pestis PY-05]
gi|420571504|ref|ZP_15066829.1| peptide chain release factor 1 [Yersinia pestis PY-06]
gi|420579222|ref|ZP_15073808.1| peptide chain release factor 1 [Yersinia pestis PY-07]
gi|420584590|ref|ZP_15078681.1| peptide chain release factor 1 [Yersinia pestis PY-08]
gi|420589716|ref|ZP_15083292.1| peptide chain release factor 1 [Yersinia pestis PY-09]
gi|420595094|ref|ZP_15088136.1| peptide chain release factor 1 [Yersinia pestis PY-10]
gi|420600716|ref|ZP_15093145.1| peptide chain release factor 1 [Yersinia pestis PY-11]
gi|420606201|ref|ZP_15098078.1| peptide chain release factor 1 [Yersinia pestis PY-12]
gi|420611553|ref|ZP_15102899.1| peptide chain release factor 1 [Yersinia pestis PY-13]
gi|420616942|ref|ZP_15107642.1| peptide chain release factor 1 [Yersinia pestis PY-14]
gi|420622246|ref|ZP_15112358.1| peptide chain release factor 1 [Yersinia pestis PY-15]
gi|420627346|ref|ZP_15116984.1| peptide chain release factor 1 [Yersinia pestis PY-16]
gi|420632462|ref|ZP_15121598.1| peptide chain release factor 1 [Yersinia pestis PY-19]
gi|420637672|ref|ZP_15126269.1| peptide chain release factor 1 [Yersinia pestis PY-25]
gi|420643199|ref|ZP_15131285.1| peptide chain release factor 1 [Yersinia pestis PY-29]
gi|420648419|ref|ZP_15136032.1| peptide chain release factor 1 [Yersinia pestis PY-32]
gi|420654054|ref|ZP_15141096.1| peptide chain release factor 1 [Yersinia pestis PY-34]
gi|420659541|ref|ZP_15146027.1| peptide chain release factor 1 [Yersinia pestis PY-36]
gi|420664834|ref|ZP_15150762.1| peptide chain release factor 1 [Yersinia pestis PY-42]
gi|420669754|ref|ZP_15155234.1| peptide chain release factor 1 [Yersinia pestis PY-45]
gi|420675110|ref|ZP_15160105.1| peptide chain release factor 1 [Yersinia pestis PY-46]
gi|420680701|ref|ZP_15165170.1| peptide chain release factor 1 [Yersinia pestis PY-47]
gi|420685984|ref|ZP_15169888.1| peptide chain release factor 1 [Yersinia pestis PY-48]
gi|420691166|ref|ZP_15174463.1| peptide chain release factor 1 [Yersinia pestis PY-52]
gi|420696954|ref|ZP_15179533.1| peptide chain release factor 1 [Yersinia pestis PY-53]
gi|420708227|ref|ZP_15188955.1| peptide chain release factor 1 [Yersinia pestis PY-55]
gi|420713641|ref|ZP_15193802.1| peptide chain release factor 1 [Yersinia pestis PY-56]
gi|420719099|ref|ZP_15198550.1| peptide chain release factor 1 [Yersinia pestis PY-58]
gi|420724634|ref|ZP_15203352.1| peptide chain release factor 1 [Yersinia pestis PY-59]
gi|420730241|ref|ZP_15208368.1| peptide chain release factor 1 [Yersinia pestis PY-60]
gi|420735271|ref|ZP_15212922.1| peptide chain release factor 1 [Yersinia pestis PY-61]
gi|420740746|ref|ZP_15217848.1| peptide chain release factor 1 [Yersinia pestis PY-63]
gi|420746268|ref|ZP_15222610.1| peptide chain release factor 1 [Yersinia pestis PY-64]
gi|420751884|ref|ZP_15227512.1| peptide chain release factor 1 [Yersinia pestis PY-65]
gi|420754437|ref|ZP_15229815.1| peptide chain release factor 1 [Yersinia pestis PY-66]
gi|420762907|ref|ZP_15236764.1| peptide chain release factor 1 [Yersinia pestis PY-71]
gi|420768119|ref|ZP_15241463.1| peptide chain release factor 1 [Yersinia pestis PY-72]
gi|420773168|ref|ZP_15246009.1| peptide chain release factor 1 [Yersinia pestis PY-76]
gi|420778683|ref|ZP_15250894.1| peptide chain release factor 1 [Yersinia pestis PY-88]
gi|420784280|ref|ZP_15255799.1| peptide chain release factor 1 [Yersinia pestis PY-89]
gi|420789521|ref|ZP_15260462.1| peptide chain release factor 1 [Yersinia pestis PY-90]
gi|420795021|ref|ZP_15265415.1| peptide chain release factor 1 [Yersinia pestis PY-91]
gi|420800077|ref|ZP_15269955.1| peptide chain release factor 1 [Yersinia pestis PY-92]
gi|420805467|ref|ZP_15274824.1| peptide chain release factor 1 [Yersinia pestis PY-93]
gi|420810766|ref|ZP_15279604.1| peptide chain release factor 1 [Yersinia pestis PY-94]
gi|420816343|ref|ZP_15284619.1| peptide chain release factor 1 [Yersinia pestis PY-95]
gi|420821619|ref|ZP_15289378.1| peptide chain release factor 1 [Yersinia pestis PY-96]
gi|420826718|ref|ZP_15293945.1| peptide chain release factor 1 [Yersinia pestis PY-98]
gi|420832416|ref|ZP_15299092.1| peptide chain release factor 1 [Yersinia pestis PY-99]
gi|420837288|ref|ZP_15303497.1| peptide chain release factor 1 [Yersinia pestis PY-100]
gi|420842457|ref|ZP_15308181.1| peptide chain release factor 1 [Yersinia pestis PY-101]
gi|420848104|ref|ZP_15313264.1| peptide chain release factor 1 [Yersinia pestis PY-102]
gi|420853614|ref|ZP_15318025.1| peptide chain release factor 1 [Yersinia pestis PY-103]
gi|420858966|ref|ZP_15322653.1| peptide chain release factor 1 [Yersinia pestis PY-113]
gi|421763506|ref|ZP_16200301.1| peptide chain release factor 1 [Yersinia pestis INS]
gi|20139332|sp|Q8ZEX8.1|RF1_YERPE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361639|sp|Q1C854.1|RF1_YERPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361640|sp|Q1CJK1.1|RF1_YERPN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223619|sp|A4TJN7.1|RF1_YERPP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166977371|sp|A7FIG1.1|RF1_YERP3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238687250|sp|A9QZ08.1|RF1_YERPG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238688460|sp|B1JM85.1|RF1_YERPY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238691366|sp|B2K2Z0.1|RF1_YERPB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|21959139|gb|AAM85849.1|AE013831_12 peptide chain release factor RF-1 [Yersinia pestis KIM10+]
gi|45436531|gb|AAS62085.1| peptide chain release factor 1 [Yersinia pestis biovar Microtus
str. 91001]
gi|108775310|gb|ABG17829.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis
Nepal516]
gi|108779310|gb|ABG13368.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis
Antiqua]
gi|115347739|emb|CAL20654.1| peptide chain release factor 1 [Yersinia pestis CO92]
gi|145210092|gb|ABP39499.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis
Pestoides F]
gi|149292464|gb|EDM42538.1| peptide chain release factor 1 [Yersinia pestis CA88-4125]
gi|152958846|gb|ABS46307.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP
31758]
gi|162354441|gb|ABX88389.1| peptide chain release factor 1 [Yersinia pestis Angola]
gi|165913193|gb|EDR31816.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921639|gb|EDR38836.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165991672|gb|EDR43973.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207620|gb|EDR52100.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962115|gb|EDR58136.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167049069|gb|EDR60477.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056264|gb|EDR66033.1| peptide chain release factor 1 [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|169750944|gb|ACA68462.1| peptide chain release factor 1 [Yersinia pseudotuberculosis YPIII]
gi|186698400|gb|ACC89029.1| peptide chain release factor 1 [Yersinia pseudotuberculosis PB1/+]
gi|229680836|gb|EEO76931.1| peptide chain release factor RF-1 [Yersinia pestis Nepal516]
gi|229689112|gb|EEO81177.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693765|gb|EEO83814.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229702201|gb|EEO90220.1| peptide chain release factor RF-1 [Yersinia pestis Pestoides A]
gi|262361967|gb|ACY58688.1| peptide chain release factor 1 [Yersinia pestis D106004]
gi|262365894|gb|ACY62451.1| peptide chain release factor 1 [Yersinia pestis D182038]
gi|270339381|gb|EFA50158.1| peptide chain release factor 1 [Yersinia pestis KIM D27]
gi|294354371|gb|ADE64712.1| peptide chain release factor 1 [Yersinia pestis Z176003]
gi|320015305|gb|ADV98876.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342855284|gb|AEL73837.1| peptide chain release factor 1 [Yersinia pestis A1122]
gi|391426442|gb|EIQ88623.1| peptide chain release factor 1 [Yersinia pestis PY-01]
gi|391428162|gb|EIQ90172.1| peptide chain release factor 1 [Yersinia pestis PY-02]
gi|391429322|gb|EIQ91187.1| peptide chain release factor 1 [Yersinia pestis PY-03]
gi|391441982|gb|EIR02421.1| peptide chain release factor 1 [Yersinia pestis PY-04]
gi|391443654|gb|EIR03949.1| peptide chain release factor 1 [Yersinia pestis PY-05]
gi|391452162|gb|EIR11594.1| peptide chain release factor 1 [Yersinia pestis PY-06]
gi|391459059|gb|EIR17866.1| peptide chain release factor 1 [Yersinia pestis PY-07]
gi|391460160|gb|EIR18887.1| peptide chain release factor 1 [Yersinia pestis PY-08]
gi|391462382|gb|EIR20903.1| peptide chain release factor 1 [Yersinia pestis PY-09]
gi|391475090|gb|EIR32319.1| peptide chain release factor 1 [Yersinia pestis PY-10]
gi|391476904|gb|EIR33983.1| peptide chain release factor 1 [Yersinia pestis PY-11]
gi|391477324|gb|EIR34360.1| peptide chain release factor 1 [Yersinia pestis PY-12]
gi|391490933|gb|EIR46538.1| peptide chain release factor 1 [Yersinia pestis PY-13]
gi|391492041|gb|EIR47544.1| peptide chain release factor 1 [Yersinia pestis PY-15]
gi|391494270|gb|EIR49523.1| peptide chain release factor 1 [Yersinia pestis PY-14]
gi|391506610|gb|EIR60514.1| peptide chain release factor 1 [Yersinia pestis PY-16]
gi|391507444|gb|EIR61272.1| peptide chain release factor 1 [Yersinia pestis PY-19]
gi|391511902|gb|EIR65269.1| peptide chain release factor 1 [Yersinia pestis PY-25]
gi|391522310|gb|EIR74705.1| peptide chain release factor 1 [Yersinia pestis PY-29]
gi|391524873|gb|EIR77051.1| peptide chain release factor 1 [Yersinia pestis PY-34]
gi|391525975|gb|EIR78066.1| peptide chain release factor 1 [Yersinia pestis PY-32]
gi|391537918|gb|EIR88764.1| peptide chain release factor 1 [Yersinia pestis PY-36]
gi|391540531|gb|EIR91149.1| peptide chain release factor 1 [Yersinia pestis PY-42]
gi|391542428|gb|EIR92886.1| peptide chain release factor 1 [Yersinia pestis PY-45]
gi|391555740|gb|EIS04884.1| peptide chain release factor 1 [Yersinia pestis PY-46]
gi|391556214|gb|EIS05312.1| peptide chain release factor 1 [Yersinia pestis PY-47]
gi|391557529|gb|EIS06519.1| peptide chain release factor 1 [Yersinia pestis PY-48]
gi|391571032|gb|EIS18437.1| peptide chain release factor 1 [Yersinia pestis PY-52]
gi|391571625|gb|EIS18950.1| peptide chain release factor 1 [Yersinia pestis PY-53]
gi|391583983|gb|EIS29573.1| peptide chain release factor 1 [Yersinia pestis PY-55]
gi|391587103|gb|EIS32318.1| peptide chain release factor 1 [Yersinia pestis PY-56]
gi|391599199|gb|EIS42846.1| peptide chain release factor 1 [Yersinia pestis PY-58]
gi|391600425|gb|EIS43957.1| peptide chain release factor 1 [Yersinia pestis PY-60]
gi|391602121|gb|EIS45456.1| peptide chain release factor 1 [Yersinia pestis PY-59]
gi|391615016|gb|EIS56829.1| peptide chain release factor 1 [Yersinia pestis PY-61]
gi|391615624|gb|EIS57370.1| peptide chain release factor 1 [Yersinia pestis PY-63]
gi|391620710|gb|EIS61837.1| peptide chain release factor 1 [Yersinia pestis PY-64]
gi|391627189|gb|EIS67428.1| peptide chain release factor 1 [Yersinia pestis PY-65]
gi|391638398|gb|EIS77205.1| peptide chain release factor 1 [Yersinia pestis PY-71]
gi|391640919|gb|EIS79408.1| peptide chain release factor 1 [Yersinia pestis PY-72]
gi|391650447|gb|EIS87730.1| peptide chain release factor 1 [Yersinia pestis PY-76]
gi|391650717|gb|EIS87973.1| peptide chain release factor 1 [Yersinia pestis PY-66]
gi|391655028|gb|EIS91809.1| peptide chain release factor 1 [Yersinia pestis PY-88]
gi|391659641|gb|EIS95904.1| peptide chain release factor 1 [Yersinia pestis PY-89]
gi|391663516|gb|EIS99352.1| peptide chain release factor 1 [Yersinia pestis PY-90]
gi|391670852|gb|EIT05852.1| peptide chain release factor 1 [Yersinia pestis PY-91]
gi|391680897|gb|EIT14907.1| peptide chain release factor 1 [Yersinia pestis PY-93]
gi|391682388|gb|EIT16273.1| peptide chain release factor 1 [Yersinia pestis PY-92]
gi|391683016|gb|EIT16828.1| peptide chain release factor 1 [Yersinia pestis PY-94]
gi|391694800|gb|EIT27429.1| peptide chain release factor 1 [Yersinia pestis PY-95]
gi|391698233|gb|EIT30558.1| peptide chain release factor 1 [Yersinia pestis PY-96]
gi|391699509|gb|EIT31696.1| peptide chain release factor 1 [Yersinia pestis PY-98]
gi|391709435|gb|EIT40614.1| peptide chain release factor 1 [Yersinia pestis PY-99]
gi|391715585|gb|EIT46111.1| peptide chain release factor 1 [Yersinia pestis PY-100]
gi|391716294|gb|EIT46756.1| peptide chain release factor 1 [Yersinia pestis PY-101]
gi|391726709|gb|EIT56024.1| peptide chain release factor 1 [Yersinia pestis PY-102]
gi|391729970|gb|EIT58898.1| peptide chain release factor 1 [Yersinia pestis PY-103]
gi|391735058|gb|EIT63254.1| peptide chain release factor 1 [Yersinia pestis PY-113]
gi|411176407|gb|EKS46427.1| peptide chain release factor 1 [Yersinia pestis INS]
Length = 360
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 224/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ +D +M +MA EEL +A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSAQDDIEAAEMML----DDLEMREMAQEELKIAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAETRRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEIIAKISGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +G+GDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAEASERRNLLGTGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I ++ + + D +++
Sbjct: 335 GK-LDMLIQPIVQEYQADQLSAL 356
>gi|49484342|ref|YP_041566.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82751719|ref|YP_417460.1| peptide chain release factor 1 [Staphylococcus aureus RF122]
gi|257426257|ref|ZP_05602672.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428915|ref|ZP_05605309.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431524|ref|ZP_05607897.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
68-397]
gi|257434233|ref|ZP_05610583.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
E1410]
gi|257437146|ref|ZP_05613186.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M876]
gi|282904787|ref|ZP_06312661.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C160]
gi|282906462|ref|ZP_06314313.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282909431|ref|ZP_06317246.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911683|ref|ZP_06319482.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914967|ref|ZP_06322747.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M899]
gi|282917467|ref|ZP_06325220.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
D139]
gi|282920296|ref|ZP_06328020.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C427]
gi|282925507|ref|ZP_06333161.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C101]
gi|283771286|ref|ZP_06344175.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
H19]
gi|283958898|ref|ZP_06376343.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293509035|ref|ZP_06667822.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
58-424]
gi|293510950|ref|ZP_06669649.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M809]
gi|293547552|ref|ZP_06672227.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M1015]
gi|295428705|ref|ZP_06821331.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297589815|ref|ZP_06948455.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus MN8]
gi|379021794|ref|YP_005298456.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M013]
gi|384548343|ref|YP_005737596.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ED133]
gi|384550915|ref|YP_005740167.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus JKD6159]
gi|384866959|ref|YP_005747155.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus TCH60]
gi|387781096|ref|YP_005755894.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
LGA251]
gi|415684944|ref|ZP_11449973.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS00]
gi|416841469|ref|ZP_11904424.1| peptide chain release factor 1 [Staphylococcus aureus O11]
gi|416847178|ref|ZP_11906987.1| peptide chain release factor 1 [Staphylococcus aureus O46]
gi|417887778|ref|ZP_12531898.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21195]
gi|417897471|ref|ZP_12541402.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21235]
gi|417905595|ref|ZP_12549403.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21269]
gi|418562005|ref|ZP_13126474.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21262]
gi|418565053|ref|ZP_13129473.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21264]
gi|418582937|ref|ZP_13147010.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597035|ref|ZP_13160572.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21342]
gi|418602185|ref|ZP_13165597.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21345]
gi|418892633|ref|ZP_13446743.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418898705|ref|ZP_13452772.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418901506|ref|ZP_13455557.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909944|ref|ZP_13463934.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG149]
gi|418918165|ref|ZP_13472118.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923833|ref|ZP_13477744.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418952207|ref|ZP_13504246.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-160]
gi|418983065|ref|ZP_13530769.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986688|ref|ZP_13534368.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|56749405|sp|Q6GEV7.1|RF1_STAAR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361615|sp|Q2YUN5.1|RF1_STAAB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|49242471|emb|CAG41187.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82657250|emb|CAI81691.1| peptide chain release factor 1 [Staphylococcus aureus RF122]
gi|257270962|gb|EEV03135.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274257|gb|EEV05774.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277765|gb|EEV08435.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
68-397]
gi|257280872|gb|EEV11017.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
E1410]
gi|257283539|gb|EEV13666.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M876]
gi|282312908|gb|EFB43309.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C101]
gi|282316156|gb|EFB46537.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C427]
gi|282318669|gb|EFB49026.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
D139]
gi|282321170|gb|EFB51501.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M899]
gi|282324448|gb|EFB54761.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326701|gb|EFB56999.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330412|gb|EFB59930.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282594820|gb|EFB99797.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C160]
gi|283459491|gb|EFC06584.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
H19]
gi|283789616|gb|EFC28439.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290919672|gb|EFD96745.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M1015]
gi|291094739|gb|EFE25011.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
58-424]
gi|291466235|gb|EFF08762.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M809]
gi|295127375|gb|EFG57015.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297576943|gb|EFH95657.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus MN8]
gi|298695392|gb|ADI98614.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ED133]
gi|302333764|gb|ADL23957.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus JKD6159]
gi|312437464|gb|ADQ76535.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus TCH60]
gi|315193283|gb|EFU23681.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS00]
gi|323439333|gb|EGA97057.1| peptide chain release factor 1 [Staphylococcus aureus O11]
gi|323442458|gb|EGB00087.1| peptide chain release factor 1 [Staphylococcus aureus O46]
gi|341839569|gb|EGS81149.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21235]
gi|341843058|gb|EGS84290.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21269]
gi|341857126|gb|EGS97949.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21195]
gi|344178198|emb|CCC88684.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
LGA251]
gi|359831103|gb|AEV79081.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M013]
gi|371974843|gb|EHO92158.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21262]
gi|371975207|gb|EHO92506.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21264]
gi|374395820|gb|EHQ67076.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21342]
gi|374396739|gb|EHQ67965.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21345]
gi|375369571|gb|EHS73445.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-160]
gi|377700742|gb|EHT25076.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377702585|gb|EHT26906.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377702692|gb|EHT27012.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377709171|gb|EHT33442.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729636|gb|EHT53726.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377732022|gb|EHT56074.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377748433|gb|EHT72390.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377749907|gb|EHT73846.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG149]
gi|377758264|gb|EHT82150.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 358
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIEEMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEVEMLKEESSGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG +L+ IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTDKLKELNN 355
>gi|225023585|ref|ZP_03712777.1| hypothetical protein EIKCOROL_00444 [Eikenella corrodens ATCC
23834]
gi|224943680|gb|EEG24889.1| hypothetical protein EIKCOROL_00444 [Eikenella corrodens ATCC
23834]
Length = 358
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/341 (46%), Positives = 233/341 (68%), Gaps = 8/341 (2%)
Query: 82 LVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L++ PEA+ + + N+E +L + + R + ++ + ++ D +M D
Sbjct: 22 LLSTPEATVDINRFRQLNQEHAELTPVVEAYRQYRQAESDLADAEDMLA----DPEMKDF 77
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ A + + L + L K LLPKD+ D ++ LEVRAGTGG+EA+LFA D+ +MY R
Sbjct: 78 AAEEIEAAKAKIETLDTELQKLLLPKDEDDGKNIFLEVRAGTGGDEAALFAADLLRMYTR 137
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+++ W+ E+V ESDL GYKE A I+G+G YG+LKFESG HRVQRVP TE GR+H
Sbjct: 138 YAERNRWQVEIVSANESDLGGYKEVIARIAGIGAYGRLKFESGGHRVQRVPATESQGRIH 197
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ +++L +LRIDT+R+ G+GGQH N T+SA+R+TH+PTGM +
Sbjct: 198 TSACTVAVMPEADELEEIQLNPAELRIDTFRASGAGGQHINKTDSAIRITHLPTGMVVEC 257
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGRV
Sbjct: 258 QDGRSQHANKAQAMKVLAARLNDKQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRV 317
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
TDHR+ +T H + +M+G +++ +AL+ + + + +A+ G
Sbjct: 318 TDHRINLTLHKLDFVMDG-DMEEITNALIAEHQAELLAAMG 357
>gi|184154903|ref|YP_001843243.1| peptide chain release factor 1 [Lactobacillus fermentum IFO 3956]
gi|238692951|sp|B2GAT1.1|RF1_LACF3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|183226247|dbj|BAG26763.1| peptide chain release factor 1 [Lactobacillus fermentum IFO 3956]
Length = 360
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 233/343 (67%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I
Sbjct: 7 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDTE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E S D D+++M EEL A + + +LQ L L+PKD D+++ I+E+R GG+E
Sbjct: 67 MLREES-DPDLVEMTKEELNEAKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGDE 125
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GW EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 126 ASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAHR 185
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P TE +GRVHTS +V ++P+A++VDV L +D+R+D YRS G+GGQH N T+SAV
Sbjct: 186 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L A++Y+ + + R IG+GDRS
Sbjct: 246 RMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDYYQQQEQSEYDAQRKNAIGTGDRS 305
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M G +L+ I++L++
Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAG-DLEEIIESLII 347
>gi|406596337|ref|YP_006747467.1| peptide chain release factor 1 [Alteromonas macleodii ATCC 27126]
gi|407683285|ref|YP_006798459.1| peptide chain release factor 1 [Alteromonas macleodii str. 'English
Channel 673']
gi|407687226|ref|YP_006802399.1| peptide chain release factor 1 [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|406373658|gb|AFS36913.1| peptide chain release factor 1 [Alteromonas macleodii ATCC 27126]
gi|407244896|gb|AFT74082.1| peptide chain release factor 1 [Alteromonas macleodii str. 'English
Channel 673']
gi|407290606|gb|AFT94918.1| peptide chain release factor 1 [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 361
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/327 (47%), Positives = 223/327 (68%), Gaps = 4/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L D + + + Q+ + + ++ E +D +M +MA EE+ A E +
Sbjct: 35 FRNLSKEFSQLEDVVAGFNAYQQAQENLASAQEMLNE--DDAEMREMAQEEMKDAKAEIE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
RL++ L LLPKD D+ +C LE+RAG GG+EA++FA D+F+MY RY++ +GW+ E+V
Sbjct: 93 RLETELQVLLLPKDPNDDNNCFLEIRAGAGGDEAAIFAGDLFRMYSRYAESRGWRVELVN 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A +SG GVYG LKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 153 ANEGEHGGYKEVIANVSGDGVYGVLKFESGGHRVQRVPETESQGRIHTSACTVAVLPEIP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + + +LRIDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH N+AKA
Sbjct: 213 ESQAIEINPAELRIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ VL A+L ++E + + R +GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 273 MSVLQARLNQIEEEKRAAEEASTRKSLVGSGDRSERIRTYNFPQGRVTDHRINLTIYRLD 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASF 418
+++EG +L ID +L + + D +AS
Sbjct: 333 EVVEG-DLKQLIDPILQEHQADLLASL 358
>gi|429206370|ref|ZP_19197636.1| Peptide chain release factor 1 [Rhodobacter sp. AKP1]
gi|428190411|gb|EKX58957.1| Peptide chain release factor 1 [Rhodobacter sp. AKP1]
Length = 351
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/304 (50%), Positives = 217/304 (71%), Gaps = 12/304 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL--------QSLLLKSL 162
+EL+ EI ++ + + +E + ML E LA DE L Q+L L +L
Sbjct: 38 AELKPVVAEISAYRTALEDLAEAEAMLS-DPEMRALAEDEIPALRARIPGMEQALRL-AL 95
Query: 163 LPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222
LPKD AD R ILE+R GTGGEEA+LFA D+ +MY+RY++ +GW+FE++ + S+L G +
Sbjct: 96 LPKDAADARPAILEIRPGTGGEEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIR 155
Query: 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED 282
EA+A + G G + +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D
Sbjct: 156 EATARVEGEGAFARLKYESGVHRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAAD 215
Query: 283 LRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM 342
+RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY++
Sbjct: 216 IRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIIVT-SSEKSQHRNREIAMQVLRARLYDL 274
Query: 343 ERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF 402
ER R+ +RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T +A+ +M G +L
Sbjct: 275 ERQRLADARSADRKAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYALPQIMAG-DLSEV 333
Query: 403 IDAL 406
I AL
Sbjct: 334 ISAL 337
>gi|310816145|ref|YP_003964109.1| peptide chain release factor 1 [Ketogulonicigenium vulgare Y25]
gi|385233648|ref|YP_005794990.1| peptide chain release factor 1 [Ketogulonicigenium vulgare WSH-001]
gi|308754880|gb|ADO42809.1| peptide chain release factor 1 [Ketogulonicigenium vulgare Y25]
gi|343462559|gb|AEM40994.1| Peptide chain release factor 1 [Ketogulonicigenium vulgare WSH-001]
Length = 352
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/275 (52%), Positives = 202/275 (73%), Gaps = 2/275 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D DM A EEL + + K+LLP+D AD R +LE+R GTGG+EASLFA D
Sbjct: 66 DPDMRAFAEEELPRLRTAFAEAEIEMQKALLPRDAADGRPAMLEIRPGTGGDEASLFAAD 125
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY+RYS+ KGW+FE++ E++L G KE I G GV+ ++K+ESG+HRVQRVP T
Sbjct: 126 LLRMYQRYSESKGWRFEIIEEAETELGGIKEVVVRIEGEGVFARMKYESGVHRVQRVPET 185
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E GR+HTSA +VA+LP+A+ VD+ + D+RIDT R+ G+GGQH NTT+SAVR+TH+PT
Sbjct: 186 ESGGRIHTSAATVAVLPEAEAVDIEINPGDIRIDTMRASGAGGQHVNTTDSAVRITHLPT 245
Query: 313 GMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYN 372
G+ ++ ++SQH N+ A+ VL A+LY+MERSR+ +RS R Q+GSGDRSERIRTYN
Sbjct: 246 GIIVT-SSQKSQHRNRELAMDVLRARLYDMERSRVDGARSADRKAQVGSGDRSERIRTYN 304
Query: 373 FPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
FPQGR+TDHR+ +T + + +++G +LD +DAL+
Sbjct: 305 FPQGRMTDHRINMTLYRLDQILQG-DLDEIVDALV 338
>gi|421711082|ref|ZP_16150426.1| peptide chain release factor 1 [Helicobacter pylori R030b]
gi|407213287|gb|EKE83145.1| peptide chain release factor 1 [Helicobacter pylori R030b]
Length = 352
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|429765265|ref|ZP_19297565.1| peptide chain release factor 1 [Clostridium celatum DSM 1785]
gi|429186715|gb|EKY27651.1| peptide chain release factor 1 [Clostridium celatum DSM 1785]
Length = 361
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/334 (44%), Positives = 229/334 (68%), Gaps = 2/334 (0%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A+ E+ K KE L + E + ++++ K ++ E S DK+M +M +EE+ +
Sbjct: 27 ANQKEWRKLCKEHADLEVIVTAYREYKKVVEDLEANKEMLEEES-DKEMREMLSEEISML 85
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
++E+ L++ + LLPKD D+++ +E+R G GG+EA+LFA ++F+MY RY++ + W
Sbjct: 86 KEQEEELENKIQILLLPKDPNDDKNVFVEIRGGAGGDEAALFAANLFRMYTRYAESQRWS 145
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
E++ E+DL G+KE I G G Y KLK+ESG+HRVQRVP TE SGR+HTS +VA+
Sbjct: 146 VEMMSSNENDLGGFKEVVFMIKGNGAYSKLKYESGVHRVQRVPDTESSGRIHTSTATVAV 205
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+ D+V++ + ++DLRID YRS G+GGQ NTT+SAVR+THIPTG ++ QDE+SQ N
Sbjct: 206 LPEVDDVEIEINDKDLRIDVYRSSGNGGQCVNTTDSAVRITHIPTGTVVACQDEKSQLKN 265
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
K KA+KVL A+LYE + ++ R Q+G+GDRSERIRTYN+PQGR+TDHR+G+T
Sbjct: 266 KEKAMKVLRARLYEAAEAERMAGIAEDRKSQVGTGDRSERIRTYNYPQGRITDHRIGLTL 325
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
+ + M G +++ I+AL+ + + + + G+T
Sbjct: 326 YKLDSFMNG-DIEEVINALITADQAEKMKAMGNT 358
>gi|420420826|ref|ZP_14919910.1| peptide chain release factor 1 [Helicobacter pylori NQ4161]
gi|393035625|gb|EJB36669.1| peptide chain release factor 1 [Helicobacter pylori NQ4161]
Length = 352
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK EVV +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|385224770|ref|YP_005784695.1| peptide chain release factor RF1 [Helicobacter pylori 83]
gi|385248583|ref|YP_005776802.1| peptide chain release factor 1 [Helicobacter pylori F57]
gi|317181378|dbj|BAJ59162.1| peptide chain release factor 1 [Helicobacter pylori F57]
gi|332672916|gb|AEE69733.1| peptide chain release factor RF1 [Helicobacter pylori 83]
Length = 352
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 234/347 (67%), Gaps = 8/347 (2%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I+ +++ +I +R L L+ S AE K+L +L I E+ KE +
Sbjct: 3 ILAEKLYSILKRYDELTALL-----SSAEVVSDIKKLTELSKEQSSIEEISVASKEYLSV 57
Query: 124 KSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
I E E DK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+RAG
Sbjct: 58 LENIKENKELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE
Sbjct: 118 TGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
+G HRVQRVP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NT
Sbjct: 178 AGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNT 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+TH+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+G
Sbjct: 238 TDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVG 297
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SGDRSERIRTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 298 SGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|419830631|ref|ZP_14354116.1| peptide chain release factor 1 [Vibrio cholerae HC-1A2]
gi|419834313|ref|ZP_14357768.1| peptide chain release factor 1 [Vibrio cholerae HC-61A2]
gi|422308120|ref|ZP_16395273.1| peptide chain release factor 1 [Vibrio cholerae CP1035(8)]
gi|422918020|ref|ZP_16952338.1| peptide chain release factor 1 [Vibrio cholerae HC-02A1]
gi|423822922|ref|ZP_17716932.1| peptide chain release factor 1 [Vibrio cholerae HC-55C2]
gi|423856886|ref|ZP_17720738.1| peptide chain release factor 1 [Vibrio cholerae HC-59A1]
gi|423883189|ref|ZP_17724326.1| peptide chain release factor 1 [Vibrio cholerae HC-60A1]
gi|423998446|ref|ZP_17741698.1| peptide chain release factor 1 [Vibrio cholerae HC-02C1]
gi|424017340|ref|ZP_17757169.1| peptide chain release factor 1 [Vibrio cholerae HC-55B2]
gi|424020264|ref|ZP_17760050.1| peptide chain release factor 1 [Vibrio cholerae HC-59B1]
gi|424625641|ref|ZP_18064102.1| peptide chain release factor 1 [Vibrio cholerae HC-50A1]
gi|424630124|ref|ZP_18068411.1| peptide chain release factor 1 [Vibrio cholerae HC-51A1]
gi|424634171|ref|ZP_18072271.1| peptide chain release factor 1 [Vibrio cholerae HC-52A1]
gi|424637249|ref|ZP_18075257.1| peptide chain release factor 1 [Vibrio cholerae HC-55A1]
gi|424641158|ref|ZP_18079041.1| peptide chain release factor 1 [Vibrio cholerae HC-56A1]
gi|424649226|ref|ZP_18086889.1| peptide chain release factor 1 [Vibrio cholerae HC-57A1]
gi|443528140|ref|ZP_21094188.1| peptide chain release factor 1 [Vibrio cholerae HC-78A1]
gi|341636902|gb|EGS61596.1| peptide chain release factor 1 [Vibrio cholerae HC-02A1]
gi|408011751|gb|EKG49555.1| peptide chain release factor 1 [Vibrio cholerae HC-50A1]
gi|408017835|gb|EKG55316.1| peptide chain release factor 1 [Vibrio cholerae HC-52A1]
gi|408022947|gb|EKG60131.1| peptide chain release factor 1 [Vibrio cholerae HC-56A1]
gi|408023380|gb|EKG60552.1| peptide chain release factor 1 [Vibrio cholerae HC-55A1]
gi|408032175|gb|EKG68767.1| peptide chain release factor 1 [Vibrio cholerae HC-57A1]
gi|408054578|gb|EKG89546.1| peptide chain release factor 1 [Vibrio cholerae HC-51A1]
gi|408618609|gb|EKK91682.1| peptide chain release factor 1 [Vibrio cholerae CP1035(8)]
gi|408620404|gb|EKK93416.1| peptide chain release factor 1 [Vibrio cholerae HC-1A2]
gi|408634898|gb|EKL07133.1| peptide chain release factor 1 [Vibrio cholerae HC-55C2]
gi|408640491|gb|EKL12283.1| peptide chain release factor 1 [Vibrio cholerae HC-59A1]
gi|408641313|gb|EKL13094.1| peptide chain release factor 1 [Vibrio cholerae HC-60A1]
gi|408649135|gb|EKL20452.1| peptide chain release factor 1 [Vibrio cholerae HC-61A2]
gi|408852801|gb|EKL92623.1| peptide chain release factor 1 [Vibrio cholerae HC-02C1]
gi|408859848|gb|EKL99502.1| peptide chain release factor 1 [Vibrio cholerae HC-55B2]
gi|408867358|gb|EKM06720.1| peptide chain release factor 1 [Vibrio cholerae HC-59B1]
gi|443453656|gb|ELT17475.1| peptide chain release factor 1 [Vibrio cholerae HC-78A1]
Length = 362
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/289 (49%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ ID ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIDPVIHEHQADQLAALA 359
>gi|255262532|ref|ZP_05341874.1| peptide chain release factor 1 [Thalassiobium sp. R2A62]
gi|255104867|gb|EET47541.1| peptide chain release factor 1 [Thalassiobium sp. R2A62]
Length = 351
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/323 (46%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
KE LR + +I+E +T + ++ + ++ D DM ++A EEL + ++
Sbjct: 35 KEYSDLRPVIDVITEYQTLEADLAEAELMM----SDPDMKELAEEELPMLRARLPEIEQN 90
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
L +LLPKD AD R ++E+R GTGG+EA+LFA D+ +MY+RY++ +GW FE++ ++
Sbjct: 91 LQIALLPKDAADARPAMIEIRPGTGGDEAALFAGDLLRMYQRYAEARGWTFEIIEEQSTE 150
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
L G KE +A + G GV+ ++K+ESG+HRVQRVP TE GR+HTSA +VA+LP+A++VD++
Sbjct: 151 LGGIKEVTAHVKGEGVFARMKYESGVHRVQRVPTTESGGRIHTSAATVAVLPEAEDVDIQ 210
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCA 337
+ DLRIDT R+ GSGGQH NTT+SAVR+THIP+G+ + + E+SQH N+ A+ L
Sbjct: 211 IDPGDLRIDTMRASGSGGQHVNTTDSAVRITHIPSGIVV-VSSEKSQHRNREIAMLTLKT 269
Query: 338 KLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGE 397
+LY+ ER R+ RS R+ QIGSGDRSERIRTYNFPQGR+TDHR+ +T + + +M+G
Sbjct: 270 RLYDAERQRVDGERSADRAAQIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDQVMQG- 328
Query: 398 NLDIFIDALLLQQEMDAIASFGS 420
+LD I+AL + +A G
Sbjct: 329 DLDETIEALTADAQATLMAEMGG 351
>gi|229917064|ref|YP_002885710.1| peptide chain release factor 1 [Exiguobacterium sp. AT1b]
gi|259585222|sp|C4KYV2.1|RF1_EXISA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229468493|gb|ACQ70265.1| peptide chain release factor 1 [Exiguobacterium sp. AT1b]
Length = 356
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 233/349 (66%), Gaps = 3/349 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ +E R L ++ PE + + + +KE +L +++ + + + +
Sbjct: 1 MFDRLSVLEDRYMQLNEMLADPEVLSDSTKLRQYSKEQAQLEETVQMYRQYKETSQAFKE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
KS++ + + D +M ++A EE+ L E K L++ L LLPKD DE++ I+EVR G
Sbjct: 61 AKSMLEDRTLDAEMRELAKEEMNLLEPEVKELEAKLRILLLPKDPNDEKNVIVEVRGAAG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D++KMY R+++++ WK E++ ++L G+KE + I+G G Y KLKFE+G
Sbjct: 121 GDEAALFAGDLYKMYTRFAERQNWKVELIDANYTELGGFKEVTFMINGAGAYSKLKFENG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTS +VA+LP+A++V+V + +D+R+DT+ S G GGQ NTT
Sbjct: 181 AHRVQRVPSTESGGRIHTSTATVAVLPEAEDVEVHIDMKDVRVDTFTSSGPGGQSVNTTQ 240
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIP+G+ +S QDE+SQH NK KA+KVL A+LY+ +S S R +G+G
Sbjct: 241 SAVRLTHIPSGLVVSCQDEKSQHKNKDKAMKVLRARLYDKMQSEHMEELSAQRKSAVGTG 300
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
DRSERIRTYNFPQ RVTDHR+G+T + ++ GE DI IDAL++ ++
Sbjct: 301 DRSERIRTYNFPQSRVTDHRIGLTLQKLDRVLAGELEDI-IDALIMDEQ 348
>gi|452850880|ref|YP_007492564.1| Peptide chain release factor 1 [Desulfovibrio piezophilus]
gi|451894534|emb|CCH47413.1| Peptide chain release factor 1 [Desulfovibrio piezophilus]
Length = 355
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/327 (47%), Positives = 222/327 (67%), Gaps = 3/327 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K +K L D + + + + +EI + ++ + D+D+ +MA E+ +
Sbjct: 31 YKKVSKAHADLGDIVKVFRDYKVVSQEIGNNREMLDDA--DEDIREMAKAEIEELEPQLP 88
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L LLPKD DE++ ILE+RAGTGG+EA+LFA D+++MY RY+++ WK E +
Sbjct: 89 LLEAKLKVLLLPKDPMDEKNIILEIRAGTGGDEAALFAADLYRMYTRYAEENRWKVEEMS 148
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ G KE A+I+G VY KLK+ESG HRVQRVP TE GR+HTSAV+VAI+ +A+
Sbjct: 149 SNSTGSGGLKEVIASIAGDKVYSKLKYESGTHRVQRVPATESQGRIHTSAVTVAIMAEAE 208
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVD+ +RNEDLR+D +R+ G GGQ NTT+SA+R+TH+PTG+ + QDE+SQH NKAKA+
Sbjct: 209 EVDIDIRNEDLRVDVFRASGPGGQSVNTTDSAIRITHVPTGLVVICQDEKSQHKNKAKAM 268
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
KVL ++L ++E+ + R Q+G+GDRSERIRTYNFPQGRV+DHR+ +T H +
Sbjct: 269 KVLRSRLLQLEQDKAKAEEDAARRSQVGTGDRSERIRTYNFPQGRVSDHRINLTLHKLPQ 328
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
+MEGE L DAL+ + +A+ G
Sbjct: 329 VMEGE-LAELTDALISHYQSEAMKRQG 354
>gi|389605213|emb|CCA44134.1| peptide chain release factor 1 RF-1 [Neisseria meningitidis
alpha522]
Length = 372
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 35 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 90
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 91 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 150
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 151 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 210
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 211 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 270
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 271 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 330
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 331 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 371
>gi|357419584|ref|YP_004932576.1| peptide chain release factor 1 [Thermovirga lienii DSM 17291]
gi|355397050|gb|AER66479.1| peptide chain release factor 1 [Thermovirga lienii DSM 17291]
Length = 357
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/340 (48%), Positives = 238/340 (70%), Gaps = 11/340 (3%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISEL----RTKQKEIDGL---KSLIYECSEDKDMLDMA 140
A P +Y KEL+KL + E+ R ++ +D + +SL++ + DK++ +MA
Sbjct: 22 ADP-QYISDPKELQKLAKKHATLEEIVQTYRQYKEVVDRISEARSLLH--ASDKELAEMA 78
Query: 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERY 200
EEL EE+RL L LLPKD D++ I+E+RAG GG+EA+LFA D+++MY R+
Sbjct: 79 QEELRELEPEEERLTERLKVLLLPKDPNDDKSVIMEIRAGAGGDEAALFAGDLYRMYTRF 138
Query: 201 SQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHT 260
+++KGW E++ + E+ + GYKE I GVG Y +LK+ESG+HRVQRVP+TE SGR+HT
Sbjct: 139 AERKGWNTEIMTMHETGIGGYKEVVFRIDGVGAYSQLKYESGVHRVQRVPVTESSGRIHT 198
Query: 261 SAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQD 320
S +VA+LP+A++VDV +R EDL+IDTYR+ G+GGQH N T+SAVR+TH+PTG+ ++ QD
Sbjct: 199 STATVAVLPEAEDVDVEIREEDLKIDTYRASGAGGQHVNMTDSAVRITHLPTGIVVTCQD 258
Query: 321 ERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTD 380
ERSQ N+AKA+K+L AKL + E + + R QIG+GDRSERIRTYNFPQ RVTD
Sbjct: 259 ERSQIKNRAKAMKLLRAKLLDNEIQKQTAELAAERKGQIGTGDRSERIRTYNFPQNRVTD 318
Query: 381 HRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
HR+G+T + + M++G +LD I AL++ + + + + S
Sbjct: 319 HRIGLTLYKLDQMLDG-DLDEMISALIIADQSEKLKALES 357
>gi|343517491|ref|ZP_08754493.1| peptide chain release factor 1 [Vibrio sp. N418]
gi|342793269|gb|EGU29072.1| peptide chain release factor 1 [Vibrio sp. N418]
Length = 362
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/323 (46%), Positives = 224/323 (69%), Gaps = 4/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q++++ + + E +D +M +MA EE+ A + +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDLEAAEEMAKE--DDAEMREMAQEEIKDAKESIERLND 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA ++F+MY ++++KKGW+ EV+ ES
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNES 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG LKFESG HRVQRVP TE GRVHTSA +VA++ + E D+
Sbjct: 157 EQGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPETESQGRVHTSACTVAVMAEIPEADL 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA++VL
Sbjct: 217 PEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMQVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E++R S R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + ++++ME
Sbjct: 277 AARIVQAEQARRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G +L ID ++ + + D +A+
Sbjct: 337 G-DLASLIDPVIQEHQADQLAAL 358
>gi|429769395|ref|ZP_19301505.1| peptide chain release factor 1 [Brevundimonas diminuta 470-4]
gi|429187059|gb|EKY27979.1| peptide chain release factor 1 [Brevundimonas diminuta 470-4]
Length = 355
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/325 (46%), Positives = 227/325 (69%), Gaps = 9/325 (2%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + D++ ++ R E++ LK++ + D +M +A +EL
Sbjct: 35 SKEHAELKPVADAVQALARARA---EVEDLKAM----AADPEMAALAADELDALTARLPE 87
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L P+D + +LEVRAGTGG+EA+LFA D+F+MY RY+ +GW+ E+
Sbjct: 88 LEREVALLLAPRDADENASAVLEVRAGTGGDEAALFAGDLFRMYSRYASTRGWRVEIDSA 147
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
TE D G+KE A +SG GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+ ++
Sbjct: 148 TEGDAGGFKEIIATVSGEGVFGRLKFESGVHRVQRVPTTEAGGRIHTSAATVAVLPEVED 207
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V++ + ++D+RIDT+R+ GSGGQH N T+SAVR+TH+PTG+ ++ E+SQH+N+ KA+K
Sbjct: 208 VEIEILDKDIRIDTFRASGSGGQHVNKTDSAVRITHLPTGI-VATSSEKSQHVNRDKAMK 266
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
L +LY+M+R +RS R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T H++ +
Sbjct: 267 NLRIRLYDMQRQAKDAARSDARKSQVGSGDRSERIRTYNFPQGRVTDHRIGLTLHSLPQI 326
Query: 394 MEGENLDIFIDALLLQQEMDAIASF 418
+EG +LD ++AL+ + + +A
Sbjct: 327 LEG-DLDPMLNALIAEDQAARLADL 350
>gi|157273346|gb|ABV27245.1| peptide chain release factor 1 [Candidatus Chloracidobacterium
thermophilum]
Length = 357
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/345 (45%), Positives = 236/345 (68%), Gaps = 4/345 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E + L ++ PE A A Y+K K+ +L + + E +T + +
Sbjct: 1 MFDKLKALEEKYEALTAQLSDPEVVADAARYAKLAKQHSELTEVVEKFREYQTIEANLAS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ E +ED +M+ +A EE+ L + + Q L + L PKD D ++ +LE+RAGTG
Sbjct: 61 ARELLNE-AEDAEMVALAREEIALLEKQRAQCQLELEQLLTPKDPNDRKNVLLEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G EASLFA ++ +MY RY++++GW+ +++ + S++ G KE I G GVY +LK ESG
Sbjct: 120 GNEASLFAGELLRMYLRYAERRGWRVQILDESLSEVGGLKEGIVLIEGTGVYSRLKHESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE +GR+HTS V+VA+LP+A+EVD+ + +D+RIDT+ S G GGQ NTT
Sbjct: 180 VHRVQRVPVTESAGRIHTSTVTVAVLPEAEEVDIEIDPKDVRIDTFCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ +SIQDE+SQ N+ KA ++L A+L E+ER + H + + R Q+G+G
Sbjct: 240 SAVRLTHLPTGLVVSIQDEKSQIKNREKAFRILRARLLELERQKQHEAIAGERRAQVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+RSE+IRTYNF + RVTDHR+G+T H + +M+GE LD ID L+
Sbjct: 300 ERSEKIRTYNFKENRVTDHRIGLTLHQLDTIMDGE-LDGLIDPLI 343
>gi|296134391|ref|YP_003641638.1| peptide chain release factor 1 [Thermincola potens JR]
gi|296032969|gb|ADG83737.1| peptide chain release factor 1 [Thermincola potens JR]
Length = 355
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/350 (47%), Positives = 228/350 (65%), Gaps = 14/350 (4%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ ++E + L L+ PE A +++ + K L + + E ++ K ID
Sbjct: 1 MLAKLQSLEEKYEELSKLIADPEIIADQSQWQRHAKAHAALTEIVSTYREYKSVLKGIDE 60
Query: 123 LKSLIYECSEDKDMLDMATEELC----LAIDEEKRLQSLLLKSLL-PKDDADERDCILEV 177
K L+ KD LD E+ + E++ S+ LK LL PKD DE++ I+E+
Sbjct: 61 AKELL------KDQLDSEFREMVEQELAELKEKEEKLSVQLKILLLPKDPNDEKNVIMEI 114
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
R G GGEEA+LFA D+F+MY RY++ KGWK E++ +D+ G+KE I G G Y +L
Sbjct: 115 RGGAGGEEAALFAGDLFRMYSRYAEAKGWKTEILSSNPTDIGGFKEIIFLIEGQGAYSRL 174
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE SGR+HTS V+VA+LP+A+EVDV + DLRID + S G GGQ
Sbjct: 175 KFESGVHRVQRVPTTESSGRIHTSTVTVAVLPEAEEVDVDIDPNDLRIDVFCSSGPGGQS 234
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT SAVRVTHIPTG+ +S QDE+SQH NK KAL+VL A+L + + + R
Sbjct: 235 VNTTQSAVRVTHIPTGIVVSCQDEKSQHKNKEKALRVLRARLLDKAQEEQRNQLASTRKS 294
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
Q+G+GDRSERIRTYNFPQGRVTDHR+G+T H + ++EG +LD I+AL+
Sbjct: 295 QVGTGDRSERIRTYNFPQGRVTDHRIGLTLHKLDMVLEG-DLDEIIEALI 343
>gi|53720682|ref|YP_109668.1| peptide chain release factor 1 [Burkholderia pseudomallei K96243]
gi|76809766|ref|YP_334968.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710b]
gi|126440521|ref|YP_001060595.1| peptide chain release factor 1 [Burkholderia pseudomallei 668]
gi|126454756|ref|YP_001067845.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106a]
gi|134283294|ref|ZP_01769995.1| peptide chain release factor 1 [Burkholderia pseudomallei 305]
gi|167721407|ref|ZP_02404643.1| peptide chain release factor 1 [Burkholderia pseudomallei DM98]
gi|167740375|ref|ZP_02413149.1| peptide chain release factor 1 [Burkholderia pseudomallei 14]
gi|167817592|ref|ZP_02449272.1| peptide chain release factor 1 [Burkholderia pseudomallei 91]
gi|167825994|ref|ZP_02457465.1| peptide chain release factor 1 [Burkholderia pseudomallei 9]
gi|167847481|ref|ZP_02472989.1| peptide chain release factor 1 [Burkholderia pseudomallei B7210]
gi|167896069|ref|ZP_02483471.1| peptide chain release factor 1 [Burkholderia pseudomallei 7894]
gi|167904455|ref|ZP_02491660.1| peptide chain release factor 1 [Burkholderia pseudomallei NCTC
13177]
gi|167912716|ref|ZP_02499807.1| peptide chain release factor 1 [Burkholderia pseudomallei 112]
gi|167920676|ref|ZP_02507767.1| peptide chain release factor 1 [Burkholderia pseudomallei BCC215]
gi|217424712|ref|ZP_03456209.1| peptide chain release factor 1 [Burkholderia pseudomallei 576]
gi|226198171|ref|ZP_03793742.1| peptide chain release factor 1 [Burkholderia pseudomallei Pakistan
9]
gi|237813980|ref|YP_002898431.1| peptide chain release factor 1 [Burkholderia pseudomallei MSHR346]
gi|242316197|ref|ZP_04815213.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106b]
gi|254190473|ref|ZP_04896981.1| peptide chain release factor 1 [Burkholderia pseudomallei Pasteur
52237]
gi|254198514|ref|ZP_04904935.1| peptide chain release factor 1 [Burkholderia pseudomallei S13]
gi|254260133|ref|ZP_04951187.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710a]
gi|254300725|ref|ZP_04968170.1| peptide chain release factor 1 [Burkholderia pseudomallei 406e]
gi|403520285|ref|YP_006654419.1| peptide chain release factor 1 [Burkholderia pseudomallei BPC006]
gi|61214599|sp|Q63QF0.1|RF1_BURPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361515|sp|Q3JN85.1|RF1_BURP1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223535|sp|A3NZS4.1|RF1_BURP0 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223536|sp|A3NE24.1|RF1_BURP6 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|52211096|emb|CAH37084.1| peptide chain release factor 1 [Burkholderia pseudomallei K96243]
gi|76579219|gb|ABA48694.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710b]
gi|126220014|gb|ABN83520.1| peptide chain release factor 1 [Burkholderia pseudomallei 668]
gi|126228398|gb|ABN91938.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106a]
gi|134245489|gb|EBA45582.1| peptide chain release factor 1 [Burkholderia pseudomallei 305]
gi|157810508|gb|EDO87678.1| peptide chain release factor 1 [Burkholderia pseudomallei 406e]
gi|157938149|gb|EDO93819.1| peptide chain release factor 1 [Burkholderia pseudomallei Pasteur
52237]
gi|169655254|gb|EDS87947.1| peptide chain release factor 1 [Burkholderia pseudomallei S13]
gi|217392168|gb|EEC32193.1| peptide chain release factor 1 [Burkholderia pseudomallei 576]
gi|225929691|gb|EEH25707.1| peptide chain release factor 1 [Burkholderia pseudomallei Pakistan
9]
gi|237505256|gb|ACQ97574.1| peptide chain release factor 1 [Burkholderia pseudomallei MSHR346]
gi|242139436|gb|EES25838.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106b]
gi|254218822|gb|EET08206.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710a]
gi|403075927|gb|AFR17507.1| peptide chain release factor 1 [Burkholderia pseudomallei BPC006]
Length = 360
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/295 (51%), Positives = 207/295 (70%), Gaps = 2/295 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +EL A D RL + L LLPKD DER+ +E+RAGTGG+E++L
Sbjct: 67 ELLADASMRDFAEDELRGARDRMGRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 247 THIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
IRTYNFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G +
Sbjct: 307 IRTYNFPQGRMTDHRINLTLYKLEQIMDG-DLDELIAALVSEHQAELLASLGDAE 360
>gi|319637760|ref|ZP_07992526.1| peptide chain release factor 1 [Neisseria mucosa C102]
gi|317400915|gb|EFV81570.1| peptide chain release factor 1 [Neisseria mucosa C102]
Length = 358
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|397690016|ref|YP_006527270.1| peptide chain release factor 1 [Melioribacter roseus P3M]
gi|395811508|gb|AFN74257.1| peptide chain release factor 1 [Melioribacter roseus P3M]
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/313 (49%), Positives = 219/313 (69%), Gaps = 8/313 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE R+L + + SE KEI+G K +I E S DK++++ A EL D K+L+
Sbjct: 37 SKERRELEEIVAAFSEYEKVLKEINGNKEII-ETSSDKELVEFAEVELK---DLSKKLEE 92
Query: 157 LLLKS---LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L K L+PKD D++D I+E+RAGTGGEEA LFA D+++MY RY++K+GW+ E++ +
Sbjct: 93 LEEKIKVLLIPKDPNDDKDVIVEIRAGTGGEEAGLFAADLYRMYSRYAEKRGWQKELIDI 152
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+++ L G KE ++SG V+G +KFESG+HRVQRVP TE SGR+HTSA SV +LP+ ++
Sbjct: 153 SDTGLGGIKEVVFSLSGTNVFGDMKFESGVHRVQRVPETEASGRIHTSAASVVVLPEVED 212
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
VDV + DLRID YRSGG+GGQ+ N +A+R+TH+PTG+ + QDERSQ N+ KA+K
Sbjct: 213 VDVEIDPNDLRIDAYRSGGAGGQNVNKVETAIRITHLPTGLVVQCQDERSQLKNRQKAMK 272
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
VL A+LY+M+ S R + GDRS++IRTYNFPQ RVTDHR+G+T + + +
Sbjct: 273 VLKARLYDMKMQEQMSEISAQRKLMVRKGDRSDKIRTYNFPQNRVTDHRIGLTLYNLDSI 332
Query: 394 MEGENLDIFIDAL 406
MEG +LD I+ L
Sbjct: 333 MEG-DLDELIEKL 344
>gi|126462320|ref|YP_001043434.1| peptide chain release factor 1 [Rhodobacter sphaeroides ATCC 17029]
gi|166223593|sp|A3PJZ6.1|RF1_RHOS1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|126103984|gb|ABN76662.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodobacter
sphaeroides ATCC 17029]
Length = 351
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/304 (50%), Positives = 217/304 (71%), Gaps = 12/304 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL--------QSLLLKSL 162
+EL+ EI ++ + + +E + ML E LA DE L Q+L L +L
Sbjct: 38 AELKPVVAEISAYRTALEDLAEAEAMLS-DPEMRALAEDEIPALRARIPGMEQALRL-AL 95
Query: 163 LPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222
LPKD AD R ILE+R GTGGEEA+LFA D+ +MY+RY++ +GW+FE++ + S+L G +
Sbjct: 96 LPKDAADARPAILEIRPGTGGEEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIR 155
Query: 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED 282
EA+A + G G + +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D
Sbjct: 156 EATARVEGEGAFARLKYESGVHRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAAD 215
Query: 283 LRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM 342
+RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY++
Sbjct: 216 IRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIIVT-SSEKSQHRNREIAMQVLRARLYDL 274
Query: 343 ERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF 402
ER R+ +RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T +A+ +M G +L
Sbjct: 275 ERQRLADARSADRKAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYALPQIMAG-DLSEV 333
Query: 403 IDAL 406
I AL
Sbjct: 334 ISAL 337
>gi|429212753|ref|ZP_19203918.1| peptide chain release factor 1 [Pseudomonas sp. M1]
gi|428157235|gb|EKX03783.1| peptide chain release factor 1 [Pseudomonas sp. M1]
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/324 (46%), Positives = 223/324 (68%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + + R Q +++G ++L+ + D D+ +MA EE+ A L+
Sbjct: 39 SREFAEVEPVILAFRDFRKTQADLEGAQALLKDS--DPDLREMAEEEVASAKACLAELED 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ EV+ E
Sbjct: 97 ALQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERQGWRVEVLSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VD 275
+ GYKE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGDNVYAKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQAA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ + DLR+DTYRS G+GGQH N T+SAVR+THIP+G+ + Q+ERSQH N+AKA+ L
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAVRITHIPSGIVVECQEERSQHKNRAKAMAWL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
AKL + +++ + + R +GSGDRSERIRTYNFPQGRVTDHR+ +T +++ ++ME
Sbjct: 277 AAKLNDQQQAAAQQAIASTRKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLGEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
GE ++ I+ LL + + D +A+ G
Sbjct: 337 GE-VEQVIEPLLQEYQADQLAALG 359
>gi|420402818|ref|ZP_14902006.1| peptide chain release factor 1 [Helicobacter pylori CPY6081]
gi|393016285|gb|EJB17445.1| peptide chain release factor 1 [Helicobacter pylori CPY6081]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 235/349 (67%), Gaps = 8/349 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I+ Q++ +I +R L L+ S AE K+L +L I E+ KE
Sbjct: 1 MSILAQKLSSILKRYDELTALL-----SSAEVVSDIKKLTELSKEQSSIEEISVASKEYL 55
Query: 122 GLKSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ I E E DK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+R
Sbjct: 56 SVLENIKENKELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LK
Sbjct: 116 AGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLK 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ
Sbjct: 176 FEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ
Sbjct: 236 NTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQ 295
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 296 VGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420395969|ref|ZP_14895193.1| peptide chain release factor 1 [Helicobacter pylori CPY1124]
gi|420396807|ref|ZP_14896025.1| peptide chain release factor 1 [Helicobacter pylori CPY1313]
gi|393012181|gb|EJB13364.1| peptide chain release factor 1 [Helicobacter pylori CPY1124]
gi|393012469|gb|EJB13647.1| peptide chain release factor 1 [Helicobacter pylori CPY1313]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|84686944|ref|ZP_01014828.1| peptide chain release factor 1 [Maritimibacter alkaliphilus
HTCC2654]
gi|84665141|gb|EAQ11621.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2654]
Length = 351
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 234/337 (69%), Gaps = 7/337 (2%)
Query: 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYEC 130
AI +R LE ++Q S E ++ +E +L+ + I+ R +I+ ++++
Sbjct: 9 AITQRFQFLEAKMSQG-LSGDEIAEVGREYAELKPVVEEIAAFRQLLSDIEDAEAML--- 64
Query: 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D +M ++A +EL + ++ + +LLP+D AD R ++E+R GTGG+EASLFA
Sbjct: 65 -SDPEMRELAEDELPGLRERLPVMEQAMRVALLPRDAADARPAMVEIRPGTGGDEASLFA 123
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+ +MY+RY++ +GWKF+ + + +++ G KE A +SG GV+ +LKFESG+HRVQRVP
Sbjct: 124 GDLLRMYQRYAEARGWKFDTLEQSLTEVGGVKEVVARVSGDGVFARLKFESGVHRVQRVP 183
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA+LP+A++VD+ + D+RIDT R+ G+GGQH NTT+SAVR+THI
Sbjct: 184 ETESGGRIHTSAATVAVLPEAEDVDIHIDPADIRIDTMRASGAGGQHVNTTDSAVRITHI 243
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ ++ E+SQH N+ A++VL +L++ ER R H R+ R Q+GSGDRSERIRT
Sbjct: 244 PTGIVVT-SSEKSQHRNREIAMQVLKTRLFDAERQRAHDERASARKAQVGSGDRSERIRT 302
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
YNFPQGR+TDHR+ +T + + D+M+G +LD IDAL+
Sbjct: 303 YNFPQGRMTDHRINLTLYKLGDVMQG-DLDEVIDALI 338
>gi|15642178|ref|NP_231810.1| peptide chain release factor 1 [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|147674456|ref|YP_001217695.1| peptide chain release factor 1 [Vibrio cholerae O395]
gi|153213234|ref|ZP_01948646.1| peptide chain release factor 1 [Vibrio cholerae 1587]
gi|153801649|ref|ZP_01956235.1| peptide chain release factor 1 [Vibrio cholerae MZO-3]
gi|153818801|ref|ZP_01971468.1| peptide chain release factor 1 [Vibrio cholerae NCTC 8457]
gi|153823572|ref|ZP_01976239.1| peptide chain release factor 1 [Vibrio cholerae B33]
gi|153825583|ref|ZP_01978250.1| peptide chain release factor 1 [Vibrio cholerae MZO-2]
gi|153828626|ref|ZP_01981293.1| peptide chain release factor 1 [Vibrio cholerae 623-39]
gi|227082304|ref|YP_002810855.1| peptide chain release factor 1 [Vibrio cholerae M66-2]
gi|227118625|ref|YP_002820521.1| peptide chain release factor 1 [Vibrio cholerae O395]
gi|229507743|ref|ZP_04397248.1| peptide chain release factor 1 [Vibrio cholerae BX 330286]
gi|229512021|ref|ZP_04401500.1| peptide chain release factor 1 [Vibrio cholerae B33]
gi|229513825|ref|ZP_04403287.1| peptide chain release factor 1 [Vibrio cholerae TMA 21]
gi|229519157|ref|ZP_04408600.1| peptide chain release factor 1 [Vibrio cholerae RC9]
gi|229522130|ref|ZP_04411547.1| peptide chain release factor 1 [Vibrio cholerae TM 11079-80]
gi|229524175|ref|ZP_04413580.1| peptide chain release factor 1 [Vibrio cholerae bv. albensis VL426]
gi|229528814|ref|ZP_04418204.1| peptide chain release factor 1 [Vibrio cholerae 12129(1)]
gi|229607288|ref|YP_002877936.1| peptide chain release factor 1 [Vibrio cholerae MJ-1236]
gi|254291410|ref|ZP_04962203.1| peptide chain release factor 1 [Vibrio cholerae AM-19226]
gi|254849258|ref|ZP_05238608.1| peptide chain release factor 1 [Vibrio cholerae MO10]
gi|255745092|ref|ZP_05419041.1| peptide chain release factor 1 [Vibrio cholera CIRS 101]
gi|262167528|ref|ZP_06035234.1| peptide chain release factor 1 [Vibrio cholerae RC27]
gi|360036056|ref|YP_004937819.1| peptide chain release factor 1 [Vibrio cholerae O1 str.
2010EL-1786]
gi|379741990|ref|YP_005333959.1| peptide chain release factor 1 [Vibrio cholerae IEC224]
gi|384425148|ref|YP_005634506.1| Peptide chain release factor 1 [Vibrio cholerae LMA3984-4]
gi|417814208|ref|ZP_12460861.1| peptide chain release factor 1 [Vibrio cholerae HC-49A2]
gi|417817945|ref|ZP_12464574.1| peptide chain release factor 1 [Vibrio cholerae HCUF01]
gi|417825416|ref|ZP_12472004.1| peptide chain release factor 1 [Vibrio cholerae HE48]
gi|418335187|ref|ZP_12944100.1| peptide chain release factor 1 [Vibrio cholerae HC-06A1]
gi|418338799|ref|ZP_12947693.1| peptide chain release factor 1 [Vibrio cholerae HC-23A1]
gi|418346721|ref|ZP_12951481.1| peptide chain release factor 1 [Vibrio cholerae HC-28A1]
gi|418350483|ref|ZP_12955214.1| peptide chain release factor 1 [Vibrio cholerae HC-43A1]
gi|418356235|ref|ZP_12958954.1| peptide chain release factor 1 [Vibrio cholerae HC-61A1]
gi|419827139|ref|ZP_14350638.1| peptide chain release factor 1 [Vibrio cholerae CP1033(6)]
gi|421317810|ref|ZP_15768378.1| peptide chain release factor 1 [Vibrio cholerae CP1032(5)]
gi|421321935|ref|ZP_15772488.1| peptide chain release factor 1 [Vibrio cholerae CP1038(11)]
gi|421325738|ref|ZP_15776262.1| peptide chain release factor 1 [Vibrio cholerae CP1041(14)]
gi|421329397|ref|ZP_15779907.1| peptide chain release factor 1 [Vibrio cholerae CP1042(15)]
gi|421333303|ref|ZP_15783780.1| peptide chain release factor 1 [Vibrio cholerae CP1046(19)]
gi|421336894|ref|ZP_15787355.1| peptide chain release factor 1 [Vibrio cholerae CP1048(21)]
gi|421340321|ref|ZP_15790753.1| peptide chain release factor 1 [Vibrio cholerae HC-20A2]
gi|421348202|ref|ZP_15798579.1| peptide chain release factor 1 [Vibrio cholerae HC-46A1]
gi|421351901|ref|ZP_15802266.1| peptide chain release factor 1 [Vibrio cholerae HE-25]
gi|422897277|ref|ZP_16934723.1| peptide chain release factor 1 [Vibrio cholerae HC-40A1]
gi|422903471|ref|ZP_16938445.1| peptide chain release factor 1 [Vibrio cholerae HC-48A1]
gi|422907355|ref|ZP_16942158.1| peptide chain release factor 1 [Vibrio cholerae HC-70A1]
gi|422914204|ref|ZP_16948710.1| peptide chain release factor 1 [Vibrio cholerae HFU-02]
gi|422923481|ref|ZP_16956632.1| peptide chain release factor 1 [Vibrio cholerae BJG-01]
gi|422926408|ref|ZP_16959422.1| peptide chain release factor 1 [Vibrio cholerae HC-38A1]
gi|423145731|ref|ZP_17133325.1| peptide chain release factor 1 [Vibrio cholerae HC-19A1]
gi|423150407|ref|ZP_17137721.1| peptide chain release factor 1 [Vibrio cholerae HC-21A1]
gi|423154225|ref|ZP_17141406.1| peptide chain release factor 1 [Vibrio cholerae HC-22A1]
gi|423157309|ref|ZP_17144402.1| peptide chain release factor 1 [Vibrio cholerae HC-32A1]
gi|423160879|ref|ZP_17147819.1| peptide chain release factor 1 [Vibrio cholerae HC-33A2]
gi|423165705|ref|ZP_17152430.1| peptide chain release factor 1 [Vibrio cholerae HC-48B2]
gi|423731722|ref|ZP_17705025.1| peptide chain release factor 1 [Vibrio cholerae HC-17A1]
gi|423769007|ref|ZP_17713149.1| peptide chain release factor 1 [Vibrio cholerae HC-50A2]
gi|423895607|ref|ZP_17727354.1| peptide chain release factor 1 [Vibrio cholerae HC-62A1]
gi|423931043|ref|ZP_17731746.1| peptide chain release factor 1 [Vibrio cholerae HC-77A1]
gi|424003159|ref|ZP_17746234.1| peptide chain release factor 1 [Vibrio cholerae HC-17A2]
gi|424006947|ref|ZP_17749917.1| peptide chain release factor 1 [Vibrio cholerae HC-37A1]
gi|424024929|ref|ZP_17764580.1| peptide chain release factor 1 [Vibrio cholerae HC-62B1]
gi|424027816|ref|ZP_17767419.1| peptide chain release factor 1 [Vibrio cholerae HC-69A1]
gi|424587094|ref|ZP_18026673.1| peptide chain release factor 1 [Vibrio cholerae CP1030(3)]
gi|424591886|ref|ZP_18031311.1| peptide chain release factor 1 [Vibrio cholerae CP1037(10)]
gi|424595743|ref|ZP_18035063.1| peptide chain release factor 1 [Vibrio cholerae CP1040(13)]
gi|424599659|ref|ZP_18038838.1| peptide chain release factor 1 [Vibrio Cholerae CP1044(17)]
gi|424602377|ref|ZP_18041518.1| peptide chain release factor 1 [Vibrio cholerae CP1047(20)]
gi|424607352|ref|ZP_18046294.1| peptide chain release factor 1 [Vibrio cholerae CP1050(23)]
gi|424611172|ref|ZP_18050011.1| peptide chain release factor 1 [Vibrio cholerae HC-39A1]
gi|424613984|ref|ZP_18052772.1| peptide chain release factor 1 [Vibrio cholerae HC-41A1]
gi|424617960|ref|ZP_18056632.1| peptide chain release factor 1 [Vibrio cholerae HC-42A1]
gi|424622744|ref|ZP_18061249.1| peptide chain release factor 1 [Vibrio cholerae HC-47A1]
gi|424645708|ref|ZP_18083444.1| peptide chain release factor 1 [Vibrio cholerae HC-56A2]
gi|424653475|ref|ZP_18090855.1| peptide chain release factor 1 [Vibrio cholerae HC-57A2]
gi|424657297|ref|ZP_18094582.1| peptide chain release factor 1 [Vibrio cholerae HC-81A2]
gi|429888058|ref|ZP_19369555.1| Peptide chain release factor 1 [Vibrio cholerae PS15]
gi|440710369|ref|ZP_20891019.1| peptide chain release factor 1 [Vibrio cholerae 4260B]
gi|443504526|ref|ZP_21071484.1| peptide chain release factor 1 [Vibrio cholerae HC-64A1]
gi|443508427|ref|ZP_21075189.1| peptide chain release factor 1 [Vibrio cholerae HC-65A1]
gi|443512271|ref|ZP_21078908.1| peptide chain release factor 1 [Vibrio cholerae HC-67A1]
gi|443515824|ref|ZP_21082335.1| peptide chain release factor 1 [Vibrio cholerae HC-68A1]
gi|443519617|ref|ZP_21086013.1| peptide chain release factor 1 [Vibrio cholerae HC-71A1]
gi|443524508|ref|ZP_21090721.1| peptide chain release factor 1 [Vibrio cholerae HC-72A2]
gi|443532104|ref|ZP_21098118.1| peptide chain release factor 1 [Vibrio cholerae HC-7A1]
gi|443535910|ref|ZP_21101783.1| peptide chain release factor 1 [Vibrio cholerae HC-80A1]
gi|443539446|ref|ZP_21105300.1| peptide chain release factor 1 [Vibrio cholerae HC-81A1]
gi|449055408|ref|ZP_21734076.1| Peptide chain release factor 1 [Vibrio cholerae O1 str. Inaba
G4222]
gi|20139356|sp|Q9KQ25.1|RF1_VIBCH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|172047628|sp|A5F696.1|RF1_VIBC3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790906|sp|C3LPI4.1|RF1_VIBCM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|9656733|gb|AAF95324.1| peptide chain release factor 1 [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124116034|gb|EAY34854.1| peptide chain release factor 1 [Vibrio cholerae 1587]
gi|124122826|gb|EAY41569.1| peptide chain release factor 1 [Vibrio cholerae MZO-3]
gi|126510644|gb|EAZ73238.1| peptide chain release factor 1 [Vibrio cholerae NCTC 8457]
gi|126518907|gb|EAZ76130.1| peptide chain release factor 1 [Vibrio cholerae B33]
gi|146316339|gb|ABQ20878.1| peptide chain release factor 1 [Vibrio cholerae O395]
gi|148875897|gb|EDL74032.1| peptide chain release factor 1 [Vibrio cholerae 623-39]
gi|149740734|gb|EDM54833.1| peptide chain release factor 1 [Vibrio cholerae MZO-2]
gi|150422740|gb|EDN14694.1| peptide chain release factor 1 [Vibrio cholerae AM-19226]
gi|227010192|gb|ACP06404.1| peptide chain release factor 1 [Vibrio cholerae M66-2]
gi|227014075|gb|ACP10285.1| peptide chain release factor 1 [Vibrio cholerae O395]
gi|229332588|gb|EEN98074.1| peptide chain release factor 1 [Vibrio cholerae 12129(1)]
gi|229337756|gb|EEO02773.1| peptide chain release factor 1 [Vibrio cholerae bv. albensis VL426]
gi|229341055|gb|EEO06060.1| peptide chain release factor 1 [Vibrio cholerae TM 11079-80]
gi|229343846|gb|EEO08821.1| peptide chain release factor 1 [Vibrio cholerae RC9]
gi|229349006|gb|EEO13963.1| peptide chain release factor 1 [Vibrio cholerae TMA 21]
gi|229351986|gb|EEO16927.1| peptide chain release factor 1 [Vibrio cholerae B33]
gi|229355248|gb|EEO20169.1| peptide chain release factor 1 [Vibrio cholerae BX 330286]
gi|229369943|gb|ACQ60366.1| peptide chain release factor 1 [Vibrio cholerae MJ-1236]
gi|254844963|gb|EET23377.1| peptide chain release factor 1 [Vibrio cholerae MO10]
gi|255736922|gb|EET92318.1| peptide chain release factor 1 [Vibrio cholera CIRS 101]
gi|262024100|gb|EEY42795.1| peptide chain release factor 1 [Vibrio cholerae RC27]
gi|327484701|gb|AEA79108.1| Peptide chain release factor 1 [Vibrio cholerae LMA3984-4]
gi|340036694|gb|EGQ97670.1| peptide chain release factor 1 [Vibrio cholerae HC-49A2]
gi|340037668|gb|EGQ98643.1| peptide chain release factor 1 [Vibrio cholerae HCUF01]
gi|340046901|gb|EGR07831.1| peptide chain release factor 1 [Vibrio cholerae HE48]
gi|341620915|gb|EGS46669.1| peptide chain release factor 1 [Vibrio cholerae HC-48A1]
gi|341621115|gb|EGS46867.1| peptide chain release factor 1 [Vibrio cholerae HC-70A1]
gi|341621667|gb|EGS47406.1| peptide chain release factor 1 [Vibrio cholerae HC-40A1]
gi|341637107|gb|EGS61799.1| peptide chain release factor 1 [Vibrio cholerae HFU-02]
gi|341644021|gb|EGS68271.1| peptide chain release factor 1 [Vibrio cholerae BJG-01]
gi|341646190|gb|EGS70308.1| peptide chain release factor 1 [Vibrio cholerae HC-38A1]
gi|356417211|gb|EHH70830.1| peptide chain release factor 1 [Vibrio cholerae HC-06A1]
gi|356418114|gb|EHH71721.1| peptide chain release factor 1 [Vibrio cholerae HC-21A1]
gi|356422569|gb|EHH76043.1| peptide chain release factor 1 [Vibrio cholerae HC-19A1]
gi|356428208|gb|EHH81437.1| peptide chain release factor 1 [Vibrio cholerae HC-22A1]
gi|356430441|gb|EHH83650.1| peptide chain release factor 1 [Vibrio cholerae HC-23A1]
gi|356433026|gb|EHH86221.1| peptide chain release factor 1 [Vibrio cholerae HC-28A1]
gi|356439583|gb|EHH92552.1| peptide chain release factor 1 [Vibrio cholerae HC-32A1]
gi|356444979|gb|EHH97788.1| peptide chain release factor 1 [Vibrio cholerae HC-43A1]
gi|356445396|gb|EHH98203.1| peptide chain release factor 1 [Vibrio cholerae HC-33A2]
gi|356450517|gb|EHI03237.1| peptide chain release factor 1 [Vibrio cholerae HC-48B2]
gi|356452733|gb|EHI05412.1| peptide chain release factor 1 [Vibrio cholerae HC-61A1]
gi|356647210|gb|AET27265.1| peptide chain release factor 1 [Vibrio cholerae O1 str.
2010EL-1786]
gi|378795500|gb|AFC58971.1| peptide chain release factor 1 [Vibrio cholerae IEC224]
gi|395916068|gb|EJH26898.1| peptide chain release factor 1 [Vibrio cholerae CP1032(5)]
gi|395917576|gb|EJH28404.1| peptide chain release factor 1 [Vibrio cholerae CP1041(14)]
gi|395918929|gb|EJH29753.1| peptide chain release factor 1 [Vibrio cholerae CP1038(11)]
gi|395927931|gb|EJH38694.1| peptide chain release factor 1 [Vibrio cholerae CP1042(15)]
gi|395928705|gb|EJH39458.1| peptide chain release factor 1 [Vibrio cholerae CP1046(19)]
gi|395931993|gb|EJH42737.1| peptide chain release factor 1 [Vibrio cholerae CP1048(21)]
gi|395939604|gb|EJH50286.1| peptide chain release factor 1 [Vibrio cholerae HC-20A2]
gi|395942781|gb|EJH53457.1| peptide chain release factor 1 [Vibrio cholerae HC-46A1]
gi|395952346|gb|EJH62960.1| peptide chain release factor 1 [Vibrio cholerae HE-25]
gi|395958559|gb|EJH69043.1| peptide chain release factor 1 [Vibrio cholerae HC-56A2]
gi|395958960|gb|EJH69412.1| peptide chain release factor 1 [Vibrio cholerae HC-57A2]
gi|395961700|gb|EJH72014.1| peptide chain release factor 1 [Vibrio cholerae HC-42A1]
gi|395970522|gb|EJH80277.1| peptide chain release factor 1 [Vibrio cholerae HC-47A1]
gi|395972694|gb|EJH82276.1| peptide chain release factor 1 [Vibrio cholerae CP1030(3)]
gi|395975523|gb|EJH85014.1| peptide chain release factor 1 [Vibrio cholerae CP1047(20)]
gi|408006824|gb|EKG44945.1| peptide chain release factor 1 [Vibrio cholerae HC-39A1]
gi|408012341|gb|EKG50125.1| peptide chain release factor 1 [Vibrio cholerae HC-41A1]
gi|408030245|gb|EKG66914.1| peptide chain release factor 1 [Vibrio cholerae CP1037(10)]
gi|408031513|gb|EKG68131.1| peptide chain release factor 1 [Vibrio cholerae CP1040(13)]
gi|408041271|gb|EKG77388.1| peptide chain release factor 1 [Vibrio Cholerae CP1044(17)]
gi|408042599|gb|EKG78644.1| peptide chain release factor 1 [Vibrio cholerae CP1050(23)]
gi|408052642|gb|EKG87672.1| peptide chain release factor 1 [Vibrio cholerae HC-81A2]
gi|408607929|gb|EKK81332.1| peptide chain release factor 1 [Vibrio cholerae CP1033(6)]
gi|408622959|gb|EKK95921.1| peptide chain release factor 1 [Vibrio cholerae HC-17A1]
gi|408633467|gb|EKL05811.1| peptide chain release factor 1 [Vibrio cholerae HC-50A2]
gi|408654475|gb|EKL25617.1| peptide chain release factor 1 [Vibrio cholerae HC-77A1]
gi|408655407|gb|EKL26532.1| peptide chain release factor 1 [Vibrio cholerae HC-62A1]
gi|408845555|gb|EKL85671.1| peptide chain release factor 1 [Vibrio cholerae HC-37A1]
gi|408845693|gb|EKL85808.1| peptide chain release factor 1 [Vibrio cholerae HC-17A2]
gi|408870231|gb|EKM09511.1| peptide chain release factor 1 [Vibrio cholerae HC-62B1]
gi|408879119|gb|EKM18112.1| peptide chain release factor 1 [Vibrio cholerae HC-69A1]
gi|429224896|gb|EKY31206.1| Peptide chain release factor 1 [Vibrio cholerae PS15]
gi|439974059|gb|ELP50255.1| peptide chain release factor 1 [Vibrio cholerae 4260B]
gi|443431471|gb|ELS74023.1| peptide chain release factor 1 [Vibrio cholerae HC-64A1]
gi|443435047|gb|ELS81192.1| peptide chain release factor 1 [Vibrio cholerae HC-65A1]
gi|443438873|gb|ELS88589.1| peptide chain release factor 1 [Vibrio cholerae HC-67A1]
gi|443443234|gb|ELS96536.1| peptide chain release factor 1 [Vibrio cholerae HC-68A1]
gi|443447035|gb|ELT03691.1| peptide chain release factor 1 [Vibrio cholerae HC-71A1]
gi|443449842|gb|ELT10133.1| peptide chain release factor 1 [Vibrio cholerae HC-72A2]
gi|443457494|gb|ELT24891.1| peptide chain release factor 1 [Vibrio cholerae HC-7A1]
gi|443460978|gb|ELT32056.1| peptide chain release factor 1 [Vibrio cholerae HC-80A1]
gi|443465546|gb|ELT40206.1| peptide chain release factor 1 [Vibrio cholerae HC-81A1]
gi|448264447|gb|EMB01684.1| Peptide chain release factor 1 [Vibrio cholerae O1 str. Inaba
G4222]
Length = 362
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/289 (49%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ ID ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIDPVIHEHQADQLAALA 359
>gi|408670823|ref|YP_006870894.1| peptide chain release factor 1 [Borrelia garinii NMJW1]
gi|407240645|gb|AFT83528.1| peptide chain release factor 1 [Borrelia garinii NMJW1]
Length = 357
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 140/283 (49%), Positives = 205/283 (72%), Gaps = 1/283 (0%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
I E + ++M ++ +E+ + + L+ + LLP+D+ D ++ I+E+RAGTGGEEA
Sbjct: 65 ILEKEDQQEMKELIKQEIIDLDKKREDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA +++ MY +YS++K WK E++ E++L G+KE I G V+ KLK+ESG+HRV
Sbjct: 125 ALFANNLYSMYIKYSERKKWKTEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE +GR+ TSA +VA+LP +E ++ + +DLRID YRS G+GGQH NTT+SAVR
Sbjct: 185 QRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ + Q+ERSQH NK +A+K+L A+LYE E S+ RS R +Q+GSGDRSE
Sbjct: 245 ITHMPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RIRTYNFPQ R+TDHR IT + + + M+GE LD +D L ++
Sbjct: 305 RIRTYNFPQNRITDHRANITLYKLEEFMQGE-LDPLLDPLTIE 346
>gi|420424660|ref|ZP_14923724.1| peptide chain release factor 1 [Helicobacter pylori Hp A-5]
gi|420530596|ref|ZP_15028972.1| peptide chain release factor 1 [Helicobacter pylori Hp P-28b]
gi|393043247|gb|EJB44251.1| peptide chain release factor 1 [Helicobacter pylori Hp A-5]
gi|393139375|gb|EJC39753.1| peptide chain release factor 1 [Helicobacter pylori Hp P-28b]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 224/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|421713596|ref|ZP_16152927.1| peptide chain release factor 1 [Helicobacter pylori R32b]
gi|407216962|gb|EKE86799.1| peptide chain release factor 1 [Helicobacter pylori R32b]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVINDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|385215355|ref|YP_005775311.1| peptide chain release factor 1 [Helicobacter pylori F32]
gi|420493433|ref|ZP_14992004.1| peptide chain release factor 1 [Helicobacter pylori Hp P-16]
gi|317179883|dbj|BAJ57669.1| peptide chain release factor 1 [Helicobacter pylori F32]
gi|393112689|gb|EJC13209.1| peptide chain release factor 1 [Helicobacter pylori Hp P-16]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK EVV +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|387781776|ref|YP_005792489.1| peptide chain release factor RF-1 [Helicobacter pylori 51]
gi|261837535|gb|ACX97301.1| peptide chain release factor RF-1 [Helicobacter pylori 51]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420451240|ref|ZP_14950094.1| peptide chain release factor 1 [Helicobacter pylori Hp H-45]
gi|393065172|gb|EJB66002.1| peptide chain release factor 1 [Helicobacter pylori Hp H-45]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEVIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|329848654|ref|ZP_08263682.1| peptide chain release factor 1 [Asticcacaulis biprosthecum C19]
gi|328843717|gb|EGF93286.1| peptide chain release factor 1 [Asticcacaulis biprosthecum C19]
Length = 358
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 228/325 (70%), Gaps = 7/325 (2%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + E++ + D++ + + R + E++ + +L D D+ +A EEL +
Sbjct: 36 SKEHAEIKPVCDAVERLLKARNQVPELEEMIAL-----GDPDLAPLAEEELGALKESLPD 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L PKD + ILE+RAGTGG+EA+LFA D+F+MY RY+ +GWK EV +
Sbjct: 91 LERGVALLLAPKDKDENASAILELRAGTGGDEAALFAGDLFRMYSRYAAAQGWKVEVDSL 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E + G+KE A+++G GV+GKLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A++
Sbjct: 151 SEGEAGGFKEIIASVTGEGVFGKLKFESGVHRVQRVPATEAGGRIHTSAATVAVLPEAED 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V++ + ++DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH N+A A++
Sbjct: 211 VEIEIHDKDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGIVVT-SSEKSQHQNRAIAMR 269
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
L A++Y+M+R + +RS R Q+GSGDRSERIRTYN+PQGRV+DHR+ +T + +
Sbjct: 270 NLKARMYDMQRQALDTARSDSRKSQVGSGDRSERIRTYNYPQGRVSDHRINLTLYNLPQF 329
Query: 394 MEGENLDIFIDALLLQQEMDAIASF 418
MEG ++ I+AL+ + + + +A
Sbjct: 330 MEG-DMGQMINALIAEDQAERLAQL 353
>gi|308183875|ref|YP_003928008.1| peptide chain release factor 1 [Helicobacter pylori SJM180]
gi|308059795|gb|ADO01691.1| peptide chain release factor 1 [Helicobacter pylori SJM180]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK EVV +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|225075789|ref|ZP_03718988.1| hypothetical protein NEIFLAOT_00805 [Neisseria flavescens
NRL30031/H210]
gi|224952871|gb|EEG34080.1| hypothetical protein NEIFLAOT_00805 [Neisseria flavescens
NRL30031/H210]
Length = 358
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
+TDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 ITDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|73542728|ref|YP_297248.1| peptide chain release factor 1 [Ralstonia eutropha JMP134]
gi|119361585|sp|Q46WS9.1|RF1_RALEJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|72120141|gb|AAZ62404.1| bacterial peptide chain release factor 1 (bRF-1) [Ralstonia
eutropha JMP134]
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/329 (46%), Positives = 223/329 (67%), Gaps = 6/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L R Q ++ ++L+ +D +M D A +E+ A +
Sbjct: 34 QYRKLSREHAELSPVAEQYGFYRQAQDDLATAQALL----DDPEMKDFAADEIASARERL 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L+ L K LLPKD D+R+ ILE+RAGTGGEE++LFA D+ +MY R+++++ W+ E++
Sbjct: 90 ESLEGSLQKLLLPKDPNDDRNLILEIRAGTGGEESALFAGDLLRMYTRFAERQRWQVEIM 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ESDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 150 SESESDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEA 209
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DEV DV + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH NK K
Sbjct: 210 DEVGDVEINPSDLRIDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKDK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+KVL A++ + + + R IGSGDRS+RIRTYNFPQGRVTDHR+ +T + I
Sbjct: 270 AMKVLAARIKDQQMRAAQAKEASTRRNLIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKI 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+M+G +L+ + AL + + D +A+ G
Sbjct: 330 DMIMDG-DLEELVSALAAEHQADQLAALG 357
>gi|420463061|ref|ZP_14961839.1| peptide chain release factor 1 [Helicobacter pylori Hp H-4]
gi|393080589|gb|EJB81314.1| peptide chain release factor 1 [Helicobacter pylori Hp H-4]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+++ GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENNVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|347542961|ref|YP_004857598.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985997|dbj|BAK81672.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 357
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/358 (45%), Positives = 244/358 (68%), Gaps = 7/358 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M QR+ +E++ L ++ PE ++ E+ K ++ +L E + ++I+
Sbjct: 1 MLQRLDFLEQKYEELCIKISDPEVMSNQKEWQKLCRDHSELEVITLKYREYKKVLEDIEY 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
KSL+ E EDK+ ++A EEL + + + +++ L LLPKD D ++ +E+RAGTG
Sbjct: 61 NKSLLDE--EDKEFRELAQEELKVLQNIKINIENELKILLLPKDPNDGKNVFVEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA ++F+MY +Y + K WK E++ V ++D+ G+KE I G G Y KLK+ESG
Sbjct: 119 GDEAALFASNLFRMYSKYVENKRWKIEMISVNDTDIGGFKEVVFMIKGNGAYSKLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSA +VA+LP+ D+VDV + DLRID +RS G+GGQ NTT+
Sbjct: 179 VHRVQRVPDTEASGRIHTSAATVAVLPEVDDVDVDINQNDLRIDVFRSSGNGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM-ERSRIHLSRSKLRSEQIGS 361
SAVR+THIP+G+ IS QDE+SQ NK KA+K+L A+L+E+ E+ R+ L ++ R Q+GS
Sbjct: 239 SAVRITHIPSGIVISCQDEKSQLKNKEKAMKLLRARLFEIAEQERLKLI-AEDRKSQVGS 297
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GDRSERIRTYN+PQGRVTDHR+G+T + + M+G +D I+ L+ Q + + + G
Sbjct: 298 GDRSERIRTYNYPQGRVTDHRIGLTIYKLDSFMDG-YIDEIIEGLITQDQSEKMKQMG 354
>gi|430809726|ref|ZP_19436841.1| peptide chain release factor 1 [Cupriavidus sp. HMR-1]
gi|429497839|gb|EKZ96360.1| peptide chain release factor 1 [Cupriavidus sp. HMR-1]
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 224/329 (68%), Gaps = 6/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L + R Q ++ ++L+ +D +M + A +E+ A +
Sbjct: 34 QYRKLSREHAELSPVAEQYGQYRQAQDDLATAQALL----DDPEMKEFAADEIDAARERL 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ L LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ E++
Sbjct: 90 QSLENSLQTLLLPKDPNDDRNLLLEIRAGTGGEESALFAADLLRMYTRYAERRRWQVEIM 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ SDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 150 SESPSDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEA 209
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DEV +V + DLR+DT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH NK K
Sbjct: 210 DEVGEVEINPSDLRVDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKEK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+KVL A++ +M+ + R IGSGDRS+RIRTYNFPQGRVTDHR+ +T + I
Sbjct: 270 AMKVLAARIKDMQLRAAQAKEASTRRNLIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKI 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+M+G +LD I AL + + D +A+ G
Sbjct: 330 DMIMDG-DLDELISALSAEHQADQLAALG 357
>gi|260433480|ref|ZP_05787451.1| peptide chain release factor 1 [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417308|gb|EEX10567.1| peptide chain release factor 1 [Silicibacter lacuscaerulensis
ITI-1157]
Length = 351
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/343 (46%), Positives = 233/343 (67%), Gaps = 7/343 (2%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I E+R+ I +R LE ++ AS + + KE L+ + I+ R + ++
Sbjct: 2 IPEERLEQITQRFQYLEAAMSDG-ASGGDIAALAKEYSDLKPVVEQIAAWRQLRADLAEA 60
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++++ D DM ++A EE+ + L +LLPKD AD R +LE+R GTGG
Sbjct: 61 EAMLG----DPDMKELAEEEIPQLKARIPEAEHALQLALLPKDAADARPAMLEIRPGTGG 116
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+ +MY+RY++ +GW+FE++ ++L G KE A I G V+ +LK+ESG+
Sbjct: 117 DEAALFAGDLLRMYQRYAEARGWQFEIIEEQHTELGGIKEVVAHIKGDNVFARLKYESGV 176
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A++VD+++ D+RIDT RS G+GGQH NTT+S
Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDIQIDPNDIRIDTMRSSGAGGQHVNTTDS 236
Query: 304 AVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGD 363
AVR+TH+PTG+ ++ E+SQH N+ A++VL +LY++ER RI RS R+ Q+GSGD
Sbjct: 237 AVRITHLPTGIVVT-SSEKSQHRNREIAMQVLKTRLYDLERQRIDSERSADRASQVGSGD 295
Query: 364 RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
RSERIRTYNFPQGR+TDHR+ +T + + +M+G +LD IDAL
Sbjct: 296 RSERIRTYNFPQGRMTDHRINLTLYKLDQIMQG-DLDEVIDAL 337
>gi|119361586|sp|Q1LIF3.2|RF1_RALME RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 224/329 (68%), Gaps = 6/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L + R Q ++ ++L+ +D +M + A +E+ A +
Sbjct: 34 QYRKLSREHAELSPVAEQYGQYRQAQDDLATAQALL----DDPEMKEFAADEIDAARERL 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ L LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ E++
Sbjct: 90 QSLENSLQTLLLPKDPNDDRNLLLEIRAGTGGEESALFAADLLRMYTRYAERRRWQVEIM 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ SDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 150 SESPSDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEA 209
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DEV +V + DLR+DT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH NK K
Sbjct: 210 DEVGEVEINPSDLRVDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKEK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+KVL A++ +M+ + R IGSGDRS+RIRTYNFPQGRVTDHR+ +T + I
Sbjct: 270 AMKVLAARIKDMQLRAAQAKEANTRRNLIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKI 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+M+G +LD I AL + + D +A+ G
Sbjct: 330 DMIMDG-DLDELISALSAEHQADQLAALG 357
>gi|336123568|ref|YP_004565616.1| peptide Chain Release factor [Vibrio anguillarum 775]
gi|335341291|gb|AEH32574.1| Bacterial Peptide Chain Release Factor [Vibrio anguillarum 775]
Length = 362
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 220/324 (67%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q+++ + + E ED +M +MA EE+ +A +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDLVAAEEMTKE--EDAEMREMAQEEIKIAKATIERLTD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY RY++K W+ E++ + +
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSRYAEKMSWRIEIMSASYA 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG LKFESG HRVQRVP TE GRVHTSA +VAI+P+ E ++
Sbjct: 157 EHGGYKEVIAKVSGDGAYGVLKFESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA+ VL
Sbjct: 217 PEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E ++ S R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + ++++ME
Sbjct: 277 AARIAQAEEAKRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +L ID ++ + + D +A+
Sbjct: 337 G-DLQSLIDPIIQEYQADQLAALA 359
>gi|257439051|ref|ZP_05614806.1| peptide chain release factor 1 [Faecalibacterium prausnitzii
A2-165]
gi|257198541|gb|EEU96825.1| peptide chain release factor 1 [Faecalibacterium prausnitzii
A2-165]
Length = 356
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/338 (46%), Positives = 223/338 (65%), Gaps = 3/338 (0%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A+ R L +NQPE A PA + + +E + + L T Q + K+L+
Sbjct: 3 AVSHRFEELSIRLNQPETAADPALFRRLMQEYHEAEPVVQAYQALTTAQDHLAQAKALLE 62
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+ D D +M +E+ E +L++ L LLPKD D++ I+E+R G GGEEA+L
Sbjct: 63 GETLDPDFKEMVQQEIGEKSQEVAQLENNLKILLLPKDVNDDKSVIMELRGGAGGEEAAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA + +MY Y Q +GW+ EV+ + E++L G KEA A++G G Y +LK+ESG+HRVQR
Sbjct: 123 FAHSLMRMYTMYVQSRGWELEVLNLNETELGGVKEAILAVNGAGAYNRLKYESGVHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTS +VA++PQA+EVD+ + +DLRIDT+RS G+GGQH N T+SA+RVT
Sbjct: 183 VPETETQGRIHTSTATVAVMPQAEEVDLVIDPKDLRIDTFRSSGAGGQHINKTSSAIRVT 242
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPTGM + Q+ERSQ NK KAL+VL ++L ++ + + R+ Q+G+GDRSE+I
Sbjct: 243 HIPTGMVVECQNERSQFQNKDKALEVLRSRLLAQKQKEQQDAINANRAGQVGTGDRSEKI 302
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
RTYNFPQ R TDHR+G+T H + +M+G NLD IDAL
Sbjct: 303 RTYNFPQDRCTDHRIGLTVHNLDKIMDG-NLDEIIDAL 339
>gi|408673534|ref|YP_006873282.1| Peptide chain release factor 1 [Emticicia oligotrophica DSM 17448]
gi|387855158|gb|AFK03255.1| Peptide chain release factor 1 [Emticicia oligotrophica DSM 17448]
Length = 359
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 236/353 (66%), Gaps = 4/353 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AI R + + PE + ++++ +KE + L ++ + I+G
Sbjct: 1 MLNQLEAIRERYEEVSQQMTMPEVVSDMTKFTRLSKEYKDLEKIVNEYKIYKNVLSNIEG 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K +I +D++M D+A EEL + +++ L++ L + L+PKD D ++ ILE+RAGTG
Sbjct: 61 AKDIIAN-EKDEEMRDLAKEELDELLPQKETLEATLKEMLIPKDPNDSKNVILEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EAS+FA D+F+MY+R+ +K+GW+ ++ E GYKE + G VYGKLK+ESG
Sbjct: 120 GDEASIFAGDLFRMYQRFIEKQGWRMTLLDHNEGTAGGYKEIVVQVEGEDVYGKLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +VA LP+ADEVD+ + D+R+DT+ S G+GGQ NTT
Sbjct: 180 VHRVQRVPATESQGRVHTSAATVAALPEADEVDLTINMNDIRVDTFCSSGAGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+ HIPTG+T+S QDERSQ N+ KAL VL ++LYEME ++ + + S R +G+G
Sbjct: 240 SAVRMVHIPTGVTVSCQDERSQIKNREKALSVLRSRLYEMEMAKHNEAISAERKGLVGNG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
DRS++IRTYN+PQ RVTDHR+G T + + +MEGE +D FI+ L + + I
Sbjct: 300 DRSDKIRTYNYPQSRVTDHRIGYTVYNLPTVMEGE-IDGFIEQLRMADNAEKI 351
>gi|88861344|ref|ZP_01135974.1| Peptide chain release factor 1 (RF-1) [Pseudoalteromonas tunicata
D2]
gi|88816610|gb|EAR26435.1| Peptide chain release factor 1 (RF-1) [Pseudoalteromonas tunicata
D2]
Length = 361
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/323 (46%), Positives = 220/323 (68%), Gaps = 4/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L D + + R ++++ + + + ED DM DMA +E A + + L
Sbjct: 39 SKEYAELEDVSKVFNAYRQAEQDLVAAEEMFKD--EDPDMRDMAQDEFKAAKAQLETLTD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L +LPKD D + LEVRAGTGG+EA++FA D+F+MY R+++ + WK E+V E
Sbjct: 97 ELQVLMLPKDPKDNNNVYLEVRAGTGGDEAAIFAGDLFRMYARFAETQKWKVEIVSANEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A ISG GVYGKLKFESG+HRVQRVP TE GRVHTSA +VA++P+ E +
Sbjct: 157 EHGGYKEVIANISGTGVYGKLKFESGVHRVQRVPETESQGRVHTSACTVAVMPEIPEAEA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ + D+++DT+R+ G+GGQH N T+SA+R+THIPTG+ + QDERSQH N+AKA+ VL
Sbjct: 217 IEINAADIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
++L + E + H + R +GSGDRSERIRTYN+PQGR+TDHR+ +T + +++++
Sbjct: 277 ASRLQQAEDEKRHAEEATQRRNLVGSGDRSERIRTYNYPQGRITDHRINLTLYKLNEIVS 336
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ L I I+ L+ + + D +A+
Sbjct: 337 GDLLPI-INPLVQEHQADLLAAM 358
>gi|386834324|ref|YP_006239639.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. 3480]
gi|385201025|gb|AFI45880.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. 3480]
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIETCKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL +++ + E+ R +++ R +GSGDRS++IRT
Sbjct: 250 PTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQAQADTRRNLLGSGDRSDKIRT 309
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YN+PQGRVTDHR+ +T + + ++M G+ +D I ++ + + D +A+
Sbjct: 310 YNYPQGRVTDHRINLTVYRLDEVMNGK-IDELIQPIITEYQADQLAAL 356
>gi|254438684|ref|ZP_05052178.1| peptide chain release factor 1 [Octadecabacter antarcticus 307]
gi|198254130|gb|EDY78444.1| peptide chain release factor 1 [Octadecabacter antarcticus 307]
Length = 344
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 231/328 (70%), Gaps = 6/328 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +LR + ++ + +EI+G ++++ D +M ++A EL +
Sbjct: 23 FVSVSREYAELRPVVEVVRHYQDLTEEIEGAQAML----SDPEMKELAEMELPQLRERLP 78
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ + +L+PKD AD + +LE+R GTGG+EA+LFA D+ +MY+RY++ +GW FE++
Sbjct: 79 DAEAAVKLALIPKDAADGKPALLEIRPGTGGDEAALFAGDLLRMYQRYAESRGWTFEILE 138
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++S+L G KE +A I+G V+ ++K+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 139 ESQSELGGIKEVTARIAGNNVFARMKYESGVHRVQRVPETESGGRIHTSAATVAVLPEAE 198
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
+VD+++ D+RIDT R+ GSGGQH NTT+SAVR+TH+P+G+ ++ E+SQH N+ A+
Sbjct: 199 DVDIQINANDIRIDTMRASGSGGQHVNTTDSAVRITHMPSGIVVT-SSEKSQHRNREIAM 257
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL +LY+ ER ++H RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 258 QVLKTRLYDAERQKVHDERSADRAAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDA 317
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFGS 420
+++G +LD ID L+ + A+A G
Sbjct: 318 ILQG-DLDEVIDGLIQDAQASALAEMGG 344
>gi|163943017|ref|YP_001647901.1| peptide chain release factor 1 [Bacillus weihenstephanensis KBAB4]
gi|423513224|ref|ZP_17489754.1| peptide chain release factor 1 [Bacillus cereus HuA2-1]
gi|423519994|ref|ZP_17496475.1| peptide chain release factor 1 [Bacillus cereus HuA2-4]
gi|229470347|sp|A9VSC7.1|RF1_BACWK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|163865214|gb|ABY46273.1| peptide chain release factor 1 [Bacillus weihenstephanensis KBAB4]
gi|401157261|gb|EJQ64661.1| peptide chain release factor 1 [Bacillus cereus HuA2-4]
gi|402445860|gb|EJV77726.1| peptide chain release factor 1 [Bacillus cereus HuA2-1]
Length = 355
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 239/355 (67%), Gaps = 7/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE + + + +KE ++D++ + E + ++++
Sbjct: 1 MLDRLQAVENRYEKLNELLSDPEVISDTNKLREYSKEQSDIQDTVEVYREYKDVREQLRD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K+++ E D DM DM EE+ +EK L L L+PKD D+++ I+EVR G
Sbjct: 61 AKAML-EDKLDADMRDMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+++MY RY++ +GWK E++ + ++L GYKE I+G G + KLKFE+G
Sbjct: 120 GDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTS +VA+LP+A+EV++ + +D+R+DT+ S G GGQ NTT
Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTM 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ +S QDE+SQ NK KA+KVL A++Y+ R + R + +G+G
Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ---QEMDA 414
DRSERIRTYNFPQ RVTDHR+G+T + +++G+ LD FI+AL+++ Q+M+A
Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGK-LDDFINALVMEDQAQKMEA 353
>gi|418288849|ref|ZP_12901275.1| peptide chain release factor 1 [Neisseria meningitidis NM233]
gi|418291111|ref|ZP_12903169.1| peptide chain release factor 1 [Neisseria meningitidis NM220]
gi|433522461|ref|ZP_20479145.1| peptide chain release factor 1 [Neisseria meningitidis 61103]
gi|372200450|gb|EHP14522.1| peptide chain release factor 1 [Neisseria meningitidis NM220]
gi|372200902|gb|EHP14896.1| peptide chain release factor 1 [Neisseria meningitidis NM233]
gi|432258070|gb|ELL13361.1| peptide chain release factor 1 [Neisseria meningitidis 61103]
Length = 358
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|15602420|ref|NP_245492.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. Pm70]
gi|378774264|ref|YP_005176507.1| peptide chain release factor 1 [Pasteurella multocida 36950]
gi|421263288|ref|ZP_15714345.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425063244|ref|ZP_18466369.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida X73]
gi|13431785|sp|P57852.1|RF1_PASMU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|12720821|gb|AAK02639.1| PrfA [Pasteurella multocida subsp. multocida str. Pm70]
gi|356596812|gb|AET15538.1| peptide chain release factor 1 [Pasteurella multocida 36950]
gi|401689798|gb|EJS85175.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404382807|gb|EJZ79264.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida X73]
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL +++ + E+ R +++ R +GSGDRS++IRT
Sbjct: 250 PTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQAQADTRRNLLGSGDRSDKIRT 309
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YN+PQGRVTDHR+ +T + + ++M G+ +D I ++ + + D +A+
Sbjct: 310 YNYPQGRVTDHRINLTVYRLDEVMNGK-IDELIQPIITEYQADQLAAL 356
>gi|386729808|ref|YP_006196191.1| peptide chain release factor 1 (RF-1) [Staphylococcus aureus subsp.
aureus 71193]
gi|387603397|ref|YP_005734918.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST398]
gi|404479399|ref|YP_006710829.1| peptide chain release factor 1 [Staphylococcus aureus 08BA02176]
gi|418311350|ref|ZP_12922875.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21331]
gi|418979397|ref|ZP_13527193.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Staphylococcus
aureus subsp. aureus DR10]
gi|283471335|emb|CAQ50546.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST398]
gi|365234481|gb|EHM75413.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21331]
gi|379992828|gb|EIA14278.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Staphylococcus
aureus subsp. aureus DR10]
gi|384231101|gb|AFH70348.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Staphylococcus
aureus subsp. aureus 71193]
gi|404440888|gb|AFR74081.1| peptide chain release factor 1 [Staphylococcus aureus 08BA02176]
Length = 358
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIEEMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEVEMLKEESSGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG +L+ IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTDKLKELNN 355
>gi|345299600|ref|YP_004828958.1| peptide chain release factor 1 [Enterobacter asburiae LF7a]
gi|345093537|gb|AEN65173.1| Peptide chain release factor 1 [Enterobacter asburiae LF7a]
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQEAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAETRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIRAAEVAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|254226890|ref|ZP_04920458.1| peptide chain release factor 1 [Vibrio cholerae V51]
gi|125620572|gb|EAZ48938.1| peptide chain release factor 1 [Vibrio cholerae V51]
Length = 362
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/289 (49%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPDDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ ID ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIDPVIHEHQADQLAALA 359
>gi|15925108|ref|NP_372642.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927692|ref|NP_375225.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
N315]
gi|21283771|ref|NP_646859.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486911|ref|YP_044132.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57652140|ref|YP_186925.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
COL]
gi|87160795|ref|YP_494718.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88196022|ref|YP_500835.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|148268569|ref|YP_001247512.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
JH9]
gi|150394633|ref|YP_001317308.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
JH1]
gi|151222234|ref|YP_001333056.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156980433|ref|YP_001442692.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161510323|ref|YP_001575982.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221141637|ref|ZP_03566130.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315787|ref|ZP_04839000.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253731044|ref|ZP_04865209.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733048|ref|ZP_04867213.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006906|ref|ZP_05145507.2| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257793876|ref|ZP_05642855.1| peptide chain release factor 1 [Staphylococcus aureus A9781]
gi|258407044|ref|ZP_05680194.1| peptide chain release factor 1 [Staphylococcus aureus A9763]
gi|258422066|ref|ZP_05684983.1| peptide chain release factor 1 [Staphylococcus aureus A9719]
gi|258433565|ref|ZP_05688638.1| peptide chain release factor 1 [Staphylococcus aureus A9299]
gi|258440460|ref|ZP_05690630.1| peptide chain release factor 1 [Staphylococcus aureus A8115]
gi|258445668|ref|ZP_05693846.1| peptide chain release factor 1 [Staphylococcus aureus A6300]
gi|258450122|ref|ZP_05698217.1| peptide chain release factor RF1 [Staphylococcus aureus A6224]
gi|258453423|ref|ZP_05701405.1| peptide chain release factor 1 [Staphylococcus aureus A5937]
gi|262049285|ref|ZP_06022160.1| peptide chain release factor 1 [Staphylococcus aureus D30]
gi|262052620|ref|ZP_06024814.1| peptide chain release factor 1 [Staphylococcus aureus 930918-3]
gi|269203754|ref|YP_003283023.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ED98]
gi|282894762|ref|ZP_06302988.1| peptide chain release factor 1 [Staphylococcus aureus A8117]
gi|282923106|ref|ZP_06330791.1| peptide chain release factor 1 [Staphylococcus aureus A9765]
gi|282929042|ref|ZP_06336627.1| peptide chain release factor 1 [Staphylococcus aureus A10102]
gi|284025152|ref|ZP_06379550.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
132]
gi|294850088|ref|ZP_06790825.1| peptide chain release factor 1 [Staphylococcus aureus A9754]
gi|295407048|ref|ZP_06816850.1| peptide chain release factor 1 [Staphylococcus aureus A8819]
gi|296275403|ref|ZP_06857910.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MR1]
gi|297210061|ref|ZP_06926454.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246047|ref|ZP_06929904.1| peptide chain release factor 1 [Staphylococcus aureus A8796]
gi|300910424|ref|ZP_07127876.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus TCH70]
gi|304379299|ref|ZP_07362038.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379015244|ref|YP_005291480.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VC40]
gi|384862770|ref|YP_005745490.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384865303|ref|YP_005750662.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384870668|ref|YP_005753382.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
T0131]
gi|385782358|ref|YP_005758529.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
11819-97]
gi|386831700|ref|YP_006238354.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387143833|ref|YP_005732227.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
TW20]
gi|387151243|ref|YP_005742807.1| Peptide chain release factor 1 [Staphylococcus aureus 04-02981]
gi|415688362|ref|ZP_11452077.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS01]
gi|415694101|ref|ZP_11455681.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS03]
gi|417650314|ref|ZP_12300086.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21189]
gi|417651582|ref|ZP_12301342.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21172]
gi|417655362|ref|ZP_12305075.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21193]
gi|417795560|ref|ZP_12442780.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21305]
gi|417799464|ref|ZP_12446604.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21310]
gi|417802281|ref|ZP_12449346.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21318]
gi|417893640|ref|ZP_12537665.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21201]
gi|417898365|ref|ZP_12542286.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21259]
gi|417900254|ref|ZP_12544144.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21266]
gi|418277214|ref|ZP_12891828.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21178]
gi|418286662|ref|ZP_12899303.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21209]
gi|418313995|ref|ZP_12925477.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21334]
gi|418315861|ref|ZP_12927313.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21340]
gi|418319221|ref|ZP_12930605.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21232]
gi|418320033|ref|ZP_12931397.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VCU006]
gi|418428179|ref|ZP_13001168.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418431065|ref|ZP_13003966.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418434971|ref|ZP_13006822.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437738|ref|ZP_13009515.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440666|ref|ZP_13012353.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443642|ref|ZP_13015228.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446638|ref|ZP_13018100.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418452564|ref|ZP_13023886.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455519|ref|ZP_13026770.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418458395|ref|ZP_13029586.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418568196|ref|ZP_13132547.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21272]
gi|418569955|ref|ZP_13134257.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21283]
gi|418572731|ref|ZP_13136937.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21333]
gi|418580041|ref|ZP_13144131.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599066|ref|ZP_13162562.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21343]
gi|418641146|ref|ZP_13203360.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-24]
gi|418645500|ref|ZP_13207622.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-55]
gi|418646515|ref|ZP_13208617.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-88]
gi|418649157|ref|ZP_13211187.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-91]
gi|418651989|ref|ZP_13213969.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-99]
gi|418655916|ref|ZP_13217748.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-105]
gi|418660196|ref|ZP_13221834.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-111]
gi|418663232|ref|ZP_13224754.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-122]
gi|418871166|ref|ZP_13425553.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875982|ref|ZP_13430231.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418878975|ref|ZP_13433206.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881813|ref|ZP_13436025.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884444|ref|ZP_13438634.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887148|ref|ZP_13441291.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418895713|ref|ZP_13449804.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418904457|ref|ZP_13458494.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418907050|ref|ZP_13461071.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912668|ref|ZP_13466645.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG547]
gi|418915249|ref|ZP_13469216.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920947|ref|ZP_13474875.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418926531|ref|ZP_13480427.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929461|ref|ZP_13483345.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418932436|ref|ZP_13486264.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418935099|ref|ZP_13488915.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418947910|ref|ZP_13500249.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-157]
gi|418955819|ref|ZP_13507755.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-189]
gi|418989185|ref|ZP_13536853.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418992035|ref|ZP_13539693.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419773806|ref|ZP_14299793.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CO-23]
gi|419783578|ref|ZP_14309362.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-M]
gi|421150914|ref|ZP_15610565.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422742974|ref|ZP_16796970.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745935|ref|ZP_16799870.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424771945|ref|ZP_18199061.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CM05]
gi|424786107|ref|ZP_18212900.1| Peptide chain release factor 1 [Staphylococcus aureus CN79]
gi|440707624|ref|ZP_20888315.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21282]
gi|440735480|ref|ZP_20915085.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|443636447|ref|ZP_21120557.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21236]
gi|443638738|ref|ZP_21122772.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21196]
gi|448742215|ref|ZP_21724167.1| peptide chain release factor 1 [Staphylococcus aureus KT/314250]
gi|448745215|ref|ZP_21727078.1| peptide chain release factor 1 [Staphylococcus aureus KT/Y21]
gi|54039049|sp|P66019.1|RF1_STAAN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|54039050|sp|P66020.1|RF1_STAAW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|54041594|sp|P66018.1|RF1_STAAM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56749376|sp|Q6G7J2.1|RF1_STAAS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|71153097|sp|Q5HE82.1|RF1_STAAC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361613|sp|Q2FF10.1|RF1_STAA3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361614|sp|Q2FWE0.1|RF1_STAA8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223609|sp|A7X4W4.1|RF1_STAA1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|172048990|sp|A6QIW2.1|RF1_STAAE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039994|sp|A6U3K3.1|RF1_STAA2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039995|sp|A5IUR3.1|RF1_STAA9 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039996|sp|A8YY83.1|RF1_STAAT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|13701912|dbj|BAB43204.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
N315]
gi|14247891|dbj|BAB58280.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu50]
gi|21205213|dbj|BAB95907.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MW2]
gi|49245354|emb|CAG43829.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286326|gb|AAW38420.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
COL]
gi|87126769|gb|ABD21283.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203580|gb|ABD31390.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741638|gb|ABQ49936.1| bacterial peptide chain release factor 1 (bRF-1) [Staphylococcus
aureus subsp. aureus JH9]
gi|149947085|gb|ABR53021.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
JH1]
gi|150375034|dbj|BAF68294.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156722568|dbj|BAF78985.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160369132|gb|ABX30103.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253725232|gb|EES93961.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728956|gb|EES97685.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
TCH130]
gi|257787848|gb|EEV26188.1| peptide chain release factor 1 [Staphylococcus aureus A9781]
gi|257841377|gb|EEV65821.1| peptide chain release factor 1 [Staphylococcus aureus A9763]
gi|257841966|gb|EEV66398.1| peptide chain release factor 1 [Staphylococcus aureus A9719]
gi|257849296|gb|EEV73275.1| peptide chain release factor 1 [Staphylococcus aureus A9299]
gi|257852529|gb|EEV76447.1| peptide chain release factor 1 [Staphylococcus aureus A8115]
gi|257855507|gb|EEV78444.1| peptide chain release factor 1 [Staphylococcus aureus A6300]
gi|257856596|gb|EEV79502.1| peptide chain release factor RF1 [Staphylococcus aureus A6224]
gi|257864404|gb|EEV87150.1| peptide chain release factor 1 [Staphylococcus aureus A5937]
gi|259159490|gb|EEW44540.1| peptide chain release factor 1 [Staphylococcus aureus 930918-3]
gi|259162650|gb|EEW47217.1| peptide chain release factor 1 [Staphylococcus aureus D30]
gi|262076044|gb|ACY12017.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ED98]
gi|269941717|emb|CBI50124.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
TW20]
gi|282589348|gb|EFB94440.1| peptide chain release factor 1 [Staphylococcus aureus A10102]
gi|282593297|gb|EFB98294.1| peptide chain release factor 1 [Staphylococcus aureus A9765]
gi|282762850|gb|EFC02984.1| peptide chain release factor 1 [Staphylococcus aureus A8117]
gi|285817782|gb|ADC38269.1| Peptide chain release factor 1 [Staphylococcus aureus 04-02981]
gi|294823036|gb|EFG39468.1| peptide chain release factor 1 [Staphylococcus aureus A9754]
gi|294968073|gb|EFG44100.1| peptide chain release factor 1 [Staphylococcus aureus A8819]
gi|296885261|gb|EFH24201.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297177046|gb|EFH36301.1| peptide chain release factor 1 [Staphylococcus aureus A8796]
gi|300888266|gb|EFK83457.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus TCH70]
gi|302751999|gb|ADL66176.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304342158|gb|EFM08058.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312830470|emb|CBX35312.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315128789|gb|EFT84789.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS03]
gi|315196948|gb|EFU27290.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140710|gb|EFW32562.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320143686|gb|EFW35463.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329314803|gb|AEB89216.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
T0131]
gi|329723967|gb|EGG60491.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21189]
gi|329726324|gb|EGG62792.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21172]
gi|329729314|gb|EGG65722.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21193]
gi|334270920|gb|EGL89316.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21305]
gi|334273795|gb|EGL92134.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21310]
gi|334275026|gb|EGL93328.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21318]
gi|341848725|gb|EGS89885.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21259]
gi|341848934|gb|EGS90089.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21266]
gi|341854036|gb|EGS94910.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21201]
gi|364523347|gb|AEW66097.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365165875|gb|EHM57623.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21209]
gi|365173692|gb|EHM64178.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21178]
gi|365228349|gb|EHM69533.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VCU006]
gi|365234609|gb|EHM75539.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21334]
gi|365240958|gb|EHM81715.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21232]
gi|365242449|gb|EHM83156.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21340]
gi|371980464|gb|EHO97672.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21272]
gi|371984075|gb|EHP01202.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21333]
gi|371985160|gb|EHP02245.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21283]
gi|374363941|gb|AEZ38046.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VC40]
gi|374398116|gb|EHQ69306.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21343]
gi|375019909|gb|EHS13459.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-24]
gi|375023019|gb|EHS16485.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-55]
gi|375023071|gb|EHS16535.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-99]
gi|375030416|gb|EHS23733.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-91]
gi|375032672|gb|EHS25898.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-88]
gi|375032771|gb|EHS25992.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-111]
gi|375034494|gb|EHS27655.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035302|gb|EHS28432.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-105]
gi|375369100|gb|EHS72991.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-125]
gi|375370544|gb|EHS74349.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374092|gb|EHS77736.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-157]
gi|377692888|gb|EHT17267.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377693011|gb|EHT17388.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377693380|gb|EHT17752.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377711518|gb|EHT35749.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713277|gb|EHT37486.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377715713|gb|EHT39900.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377721175|gb|EHT45316.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG547]
gi|377721443|gb|EHT45575.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377723877|gb|EHT47998.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377729809|gb|EHT53892.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377736653|gb|EHT60668.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377739893|gb|EHT63893.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741382|gb|EHT65371.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377754692|gb|EHT78599.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377761506|gb|EHT85377.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377762492|gb|EHT86355.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377768408|gb|EHT92191.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769201|gb|EHT92977.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383364875|gb|EID42180.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-M]
gi|383972378|gb|EID88423.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CO-23]
gi|385197092|emb|CCG16737.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716328|gb|EIK04387.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387716738|gb|EIK04787.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387723794|gb|EIK11510.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387725365|gb|EIK12983.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387728625|gb|EIK16109.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387733424|gb|EIK20608.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387734814|gb|EIK21966.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387742410|gb|EIK29228.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387743046|gb|EIK29845.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387744190|gb|EIK30961.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394328998|gb|EJE55125.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|402347532|gb|EJU82559.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CM05]
gi|421955633|gb|EKU07969.1| Peptide chain release factor 1 [Staphylococcus aureus CN79]
gi|436430588|gb|ELP27948.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436505800|gb|ELP41670.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21282]
gi|443407826|gb|ELS66364.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21236]
gi|443408774|gb|ELS67289.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21196]
gi|445547086|gb|ELY15360.1| peptide chain release factor 1 [Staphylococcus aureus KT/314250]
gi|445561486|gb|ELY17688.1| peptide chain release factor 1 [Staphylococcus aureus KT/Y21]
Length = 358
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIEEMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG +L+ IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTDKLKELNN 355
>gi|425065343|ref|ZP_18468463.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida P1059]
gi|404384207|gb|EJZ80650.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida P1059]
Length = 360
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL +++ + E+ R +++ R +GSGDRS++IRT
Sbjct: 250 PTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQAQADTRRNLLGSGDRSDKIRT 309
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YN+PQGRVTDHR+ +T + + ++M G+ +D I ++ + + D +A+
Sbjct: 310 YNYPQGRVTDHRINLTVYRLDEVMNGK-IDELIQPIITEYQADQLAAL 356
>gi|420412943|ref|ZP_14912068.1| peptide chain release factor 1 [Helicobacter pylori NQ4099]
gi|393030704|gb|EJB31782.1| peptide chain release factor 1 [Helicobacter pylori NQ4099]
Length = 352
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 222/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSD 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK EVV
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEVVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|333376032|ref|ZP_08467826.1| peptide chain release factor RF1 [Kingella kingae ATCC 23330]
gi|332969013|gb|EGK08053.1| peptide chain release factor RF1 [Kingella kingae ATCC 23330]
Length = 375
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 228/341 (66%), Gaps = 8/341 (2%)
Query: 82 LVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PEA+ Y K N+E +L + + R + ++ + ++ D DM +
Sbjct: 39 LLGSPEATANMDTYRKLNQEHAELTPIVETYQQYRQAESDLTDAQEML----SDPDMKEF 94
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ + ++L L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY R
Sbjct: 95 AAEEIEATKIKIEQLDFELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYSR 154
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
++++ W+ E+V +ESDL GYKE + G+G Y KLKFESG HRVQRVP TE GR+H
Sbjct: 155 FAERNRWQTEIVSASESDLGGYKEVIVRLIGLGAYSKLKFESGGHRVQRVPATESQGRIH 214
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ +++L DLRIDT+R+ G+GGQH N T+SA+R+TH+PTGM +
Sbjct: 215 TSACTVAVMPEADELEEIQLNPNDLRIDTFRASGAGGQHINKTDSAIRITHLPTGMVVEC 274
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGRV
Sbjct: 275 QDGRSQHANKAQAMKVLAARLNDKQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRV 334
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
TDHR+ +T H + +M+G +++ AL+ + + + +A+ G
Sbjct: 335 TDHRINLTLHKLDFVMDG-DMEEITSALIAEHQAELLAAMG 374
>gi|421542965|ref|ZP_15989066.1| peptide chain release factor 1 [Neisseria meningitidis NM255]
gi|421555376|ref|ZP_16001309.1| peptide chain release factor 1 [Neisseria meningitidis 98008]
gi|254674224|emb|CBA10008.1| peptide chain release factor 1 [Neisseria meningitidis alpha275]
gi|402316044|gb|EJU51597.1| peptide chain release factor 1 [Neisseria meningitidis NM255]
gi|402330236|gb|EJU65584.1| peptide chain release factor 1 [Neisseria meningitidis 98008]
Length = 358
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGALDTELQKLLLPKDTDDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|78065073|ref|YP_367842.1| peptide chain release factor 1 [Burkholderia sp. 383]
gi|119361516|sp|Q39K18.1|RF1_BURS3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|77965818|gb|ABB07198.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia sp.
383]
Length = 360
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/288 (52%), Positives = 207/288 (71%), Gaps = 2/288 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +E+ A + RL++ L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 71 DLSMRDFAEDEIRSARESMSRLETELQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY R+++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSERIRTY
Sbjct: 251 TGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSERIRTY 310
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
NFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G
Sbjct: 311 NFPQGRMTDHRINLTLYRLEALMDG-DLDELISALVSEHQAELLASLG 357
>gi|386860344|ref|YP_006273293.1| peptide chain release factor 1 [Burkholderia pseudomallei 1026b]
gi|418375660|ref|ZP_12965713.1| peptide chain release factor 1 [Burkholderia pseudomallei 354a]
gi|418537949|ref|ZP_13103578.1| peptide chain release factor 1 [Burkholderia pseudomallei 1026a]
gi|418545630|ref|ZP_13110882.1| peptide chain release factor 1 [Burkholderia pseudomallei 1258a]
gi|418545824|ref|ZP_13111066.1| peptide chain release factor 1 [Burkholderia pseudomallei 1258b]
gi|418552270|ref|ZP_13117142.1| peptide chain release factor 1 [Burkholderia pseudomallei 354e]
gi|385345548|gb|EIF52246.1| peptide chain release factor 1 [Burkholderia pseudomallei 1258a]
gi|385349119|gb|EIF55710.1| peptide chain release factor 1 [Burkholderia pseudomallei 1026a]
gi|385366179|gb|EIF71816.1| peptide chain release factor 1 [Burkholderia pseudomallei 1258b]
gi|385373349|gb|EIF78400.1| peptide chain release factor 1 [Burkholderia pseudomallei 354e]
gi|385378143|gb|EIF82645.1| peptide chain release factor 1 [Burkholderia pseudomallei 354a]
gi|385657472|gb|AFI64895.1| peptide chain release factor 1 [Burkholderia pseudomallei 1026b]
Length = 356
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/295 (51%), Positives = 207/295 (70%), Gaps = 2/295 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +EL A D RL + L LLPKD DER+ +E+RAGTGG+E++L
Sbjct: 63 ELLADASMRDFAEDELRGARDRMGRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 123 FAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 183 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 242
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 243 THIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 302
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
IRTYNFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G +
Sbjct: 303 IRTYNFPQGRMTDHRINLTLYKLEQIMDG-DLDELIAALVSEHQAELLASLGDAE 356
>gi|268678716|ref|YP_003303147.1| peptide chain release factor 1 [Sulfurospirillum deleyianum DSM
6946]
gi|268616747|gb|ACZ11112.1| peptide chain release factor 1 [Sulfurospirillum deleyianum DSM
6946]
Length = 355
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 202/281 (71%), Gaps = 2/281 (0%)
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EEL L ++ L+ + LLPKD DER+ LE+RAGTGG+EA++FA D+FK Y R
Sbjct: 75 AKEELKLLEPHKEILEDEIKLLLLPKDPNDERNIFLEIRAGTGGDEAAIFAADLFKSYLR 134
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y++ +GWK EVV ++E L GYKE A I G G + +LK+E G+HRVQRVPLTE GRVH
Sbjct: 135 YAENRGWKVEVVSLSEGVLNGYKEVIALIKGQGAFSRLKYEGGVHRVQRVPLTESQGRVH 194
Query: 260 TSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319
TSAV+VA++P+ D+V+V ++ +DL+ID RS G+GGQ NTT+SAVR+TH+PTG+ + Q
Sbjct: 195 TSAVTVAVMPEVDDVEVDIQEKDLKIDVMRSSGNGGQSVNTTDSAVRITHLPTGIVVVNQ 254
Query: 320 DERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVT 379
D +SQH NK A+K+L AKLY+M+ + S+ R +Q+GSGDRS RIRTYN+PQ R+T
Sbjct: 255 DGKSQHKNKDAAMKILKAKLYDMQMQERNAKESEARKQQVGSGDRSARIRTYNYPQNRIT 314
Query: 380 DHRVGITHHAISDMMEGENLDIFIDALL--LQQEMDAIASF 418
DHRVG+T + + +MEG D ID ++ Q E+ A+F
Sbjct: 315 DHRVGLTLYRLDAIMEGGLYDELIDPIITHYQAELMKEANF 355
>gi|238763000|ref|ZP_04623967.1| Peptide chain release factor 1 [Yersinia kristensenii ATCC 33638]
gi|238698758|gb|EEP91508.1| Peptide chain release factor 1 [Yersinia kristensenii ATCC 33638]
Length = 360
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ ED +M +MA +EL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDIEAAEMML----EDPEMREMAQDELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAEASERRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I ++ + + D +++
Sbjct: 335 GK-LDMLIQPIVQEYQADQLSAL 356
>gi|159044282|ref|YP_001533076.1| peptide chain release factor 1 [Dinoroseobacter shibae DFL 12]
gi|189039970|sp|A8LLU7.1|RF1_DINSH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157912042|gb|ABV93475.1| peptide chain release factor 1 [Dinoroseobacter shibae DFL 12]
Length = 351
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/275 (52%), Positives = 203/275 (73%), Gaps = 2/275 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +A EE+ ++ L +LLPKD AD R ++E+R GTGGEEA+LFA
Sbjct: 65 DDPEMRALAEEEIPALKARIPEMEQALRLALLPKDAADARPAMIEIRPGTGGEEAALFAG 124
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+ +MY+RY++ +GW+F++V + ++L G KE A +SG GV+ KLK+ESG+HRVQRVP+
Sbjct: 125 DLLRMYQRYAEAQGWRFQIVSESLTELGGIKEVIAHVSGSGVFAKLKYESGVHRVQRVPV 184
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA +VA+LP+A+ VD+ + D+RIDT R+ G+GGQH NTT+SAVR+THIP
Sbjct: 185 TESGGRIHTSAATVAVLPEAEAVDIDIPASDIRIDTMRASGAGGQHVNTTDSAVRITHIP 244
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ ++ E+SQH N+ A++VL A+LY++ER R RS R Q+GSGDRSERIRTY
Sbjct: 245 TGLVVT-SSEKSQHRNRDIAMQVLRARLYDLERQRADAERSAARKGQVGSGDRSERIRTY 303
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
NFPQGR+TDHR+ +T + + +M+G +LD I AL
Sbjct: 304 NFPQGRMTDHRINLTLYKLDQVMQG-DLDEVIAAL 337
>gi|386752059|ref|YP_006225278.1| peptide chain release factor 1 [Helicobacter pylori Shi169]
gi|384558317|gb|AFH98784.1| peptide chain release factor 1 [Helicobacter pylori Shi169]
Length = 352
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|229064980|ref|ZP_04200278.1| Peptide chain release factor 1 [Bacillus cereus AH603]
gi|228716281|gb|EEL67993.1| Peptide chain release factor 1 [Bacillus cereus AH603]
Length = 358
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 238/352 (67%), Gaps = 7/352 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
R+ A+E R L L++ PE + + + +KE ++D++ + E + ++++ K+
Sbjct: 7 RLQAVENRYEKLNELLSDPEVISDTNKLREYSKEQSDIQDTVEVYREYKDVREQLRDAKA 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E D DM DM EE+ +EK L L L+PKD D+++ I+EVR GG+E
Sbjct: 67 ML-EDKLDADMRDMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGDE 125
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+++MY RY++ +GWK E++ + ++L GYKE I+G G + KLKFE+G HR
Sbjct: 126 AALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAHR 185
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE GR+HTS +VA+LP+A+EV++ + +D+R+DT+ S G GGQ NTT SAV
Sbjct: 186 VQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTMSAV 245
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +S QDE+SQ NK KA+KVL A++Y+ R + R + +G+GDRS
Sbjct: 246 RLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDRS 305
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ---QEMDA 414
ERIRTYNFPQ RVTDHR+G+T + +++G+ LD FI+AL+++ Q+M+A
Sbjct: 306 ERIRTYNFPQNRVTDHRIGLTIQKLDQILQGK-LDDFINALVMEDQAQKMEA 356
>gi|195953354|ref|YP_002121644.1| peptide chain release factor 1 [Hydrogenobaculum sp. Y04AAS1]
gi|229576658|sp|B4U955.1|RF1_HYDS0 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|195932966|gb|ACG57666.1| peptide chain release factor 1 [Hydrogenobaculum sp. Y04AAS1]
Length = 356
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/325 (46%), Positives = 224/325 (68%), Gaps = 5/325 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +K+L++L L + K+I+ K L+ +DKD+ ++A +EL +
Sbjct: 36 YKALSKDLKELSYIHELYKDYNKILKDIEDTKELL----KDKDLRELAEKELENLNTKLL 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ + L+ L PKD D ++ ILE+RAG GGEEA+LFA D+ +MY+RY+++KGWKF ++
Sbjct: 92 QKEKELINVLTPKDANDSKNVILEIRAGAGGEEAALFAADLLRMYQRYAERKGWKFNILE 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++ L GYKE +I G VY LK+ESG+HRVQRVP+TE GR+HTS ++VA+LP+AD
Sbjct: 152 ANKTGLGGYKEVIVSIEGKNVYSHLKYESGVHRVQRVPITESGGRIHTSTITVAVLPEAD 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
E DV + +DLRI+T+R+ G+GGQ+ NTT SAVR+THIPTG++IS QDERSQ NK KA+
Sbjct: 212 ETDVVINPQDLRIETFRASGAGGQYVNTTESAVRITHIPTGISISCQDERSQLQNKLKAM 271
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
++L A+L + + K R EQ+G+G+RSE+IRTYNF Q RVTDHR+ +T H + D
Sbjct: 272 RILYARLKDFYEKQKKEETDKERKEQVGTGERSEKIRTYNFSQNRVTDHRINLTLHKLQD 331
Query: 393 MMEGENLDIFIDALLLQQEMDAIAS 417
+++G +LD I +L ++ + +AS
Sbjct: 332 VLDG-DLDDIISSLQAKELEEKLAS 355
>gi|238919470|ref|YP_002932985.1| peptide chain release factor 1, putative [Edwardsiella ictaluri
93-146]
gi|259585221|sp|C5B814.1|RF1_EDWI9 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238869039|gb|ACR68750.1| peptide chain release factor 1, putative [Edwardsiella ictaluri
93-146]
Length = 360
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/323 (48%), Positives = 220/323 (68%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D H R Q ++ + L+ +D +M DMA EEL A L+
Sbjct: 39 SREYAQLTDVSHCFLAWRQVQDDLTTAEMLL----DDPEMRDMAQEELKEARGRLAELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E
Sbjct: 95 QLQILLLPKDPDDERDCFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRIEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIARVSGDGAYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPAVPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DLRIDTYRS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PQINPADLRIDTYRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E ++ + R +GSGDRS+R+RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEIAKRQQEEASTRRNLLGSGDRSDRVRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD I+ ++ + + D +++
Sbjct: 335 GK-LDNLIEPIVQEHQADQLSAL 356
>gi|238751561|ref|ZP_04613052.1| Peptide chain release factor 1 [Yersinia rohdei ATCC 43380]
gi|238710279|gb|EEQ02506.1| Peptide chain release factor 1 [Yersinia rohdei ATCC 43380]
Length = 360
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 222/323 (68%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +++ + ++ ED +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDLEAAEMML----EDLEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAESRRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGEGVFGRLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAEASERRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G LD+ I ++ + + D +++
Sbjct: 335 G-KLDMLIQPIVQEYQADQLSAL 356
>gi|110680314|ref|YP_683321.1| peptide chain release factor 1 [Roseobacter denitrificans OCh 114]
gi|119361597|sp|Q164F8.1|RF1_ROSDO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|109456430|gb|ABG32635.1| peptide chain release factor 1 [Roseobacter denitrificans OCh 114]
Length = 351
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 157/319 (49%), Positives = 225/319 (70%), Gaps = 16/319 (5%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDML---DMATEELCLAIDEEKRLQSLL-------LK 160
S+LR ++I + L+ + + +ML DMA LA +E RL+S L
Sbjct: 38 SDLRPVVEQISAYQQLLSDLEDAAEMLGDPDMAP----LAEEEIPRLKSALPQAEAALQL 93
Query: 161 SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG 220
+LLPKD AD + +LE+R GTGG+EA+LFA D+F+MY+RY++ +GWK +++ + E++L G
Sbjct: 94 ALLPKDKADAKPAMLEIRPGTGGDEAALFAGDLFRMYQRYAETQGWKVDLIELQETELGG 153
Query: 221 YKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRN 280
KE A I G V+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A++VD+ +
Sbjct: 154 IKEVVAHIKGADVFARLKYESGVHRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIHIDA 213
Query: 281 EDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLY 340
DLRIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY
Sbjct: 214 NDLRIDTMRSSGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQHRNREIAMQVLKARLY 272
Query: 341 EMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLD 400
++ERSR+ RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +++G +LD
Sbjct: 273 DLERSRVDDERSADRAAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYRLDAVLQG-DLD 331
Query: 401 IFIDALLLQQEMDAIASFG 419
IDAL + +A G
Sbjct: 332 EIIDALTAHAQAQLMADMG 350
>gi|420473478|ref|ZP_14972156.1| peptide chain release factor 1 [Helicobacter pylori Hp H-19]
gi|393090606|gb|EJB91239.1| peptide chain release factor 1 [Helicobacter pylori Hp H-19]
Length = 352
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|343505037|ref|ZP_08742687.1| peptide chain release factor 1 [Vibrio ichthyoenteri ATCC 700023]
gi|342809079|gb|EGU44205.1| peptide chain release factor 1 [Vibrio ichthyoenteri ATCC 700023]
Length = 362
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/323 (46%), Positives = 224/323 (69%), Gaps = 4/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q++++ + + E +D +M +MA EE+ A + +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDLEAAEEMAKE--DDAEMREMAQEEIKDAKESIERLND 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA ++F+MY ++++KKGW+ EV+ ES
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNES 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG LKFESG HRVQRVP TE GRVHTSA +VA++ + E D+
Sbjct: 157 EQGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPETESQGRVHTSACTVAVMAEIPEADL 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA++VL
Sbjct: 217 PEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMQVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E++R S R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + ++++ME
Sbjct: 277 AARIVQAEQARRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G +L ID ++ + + D +A+
Sbjct: 337 G-DLASLIDPVIQEYQADQLAAL 358
>gi|358053646|ref|ZP_09147382.1| peptide chain release factor 1 [Staphylococcus simiae CCM 7213]
gi|357256833|gb|EHJ07154.1| peptide chain release factor 1 [Staphylococcus simiae CCM 7213]
Length = 358
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRSYKAKKEELADIEDMLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ + M EE DE ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIAMLKEESSALKDEIPSIEEELKFLLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S +SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFQVSGHGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T ++ +MEG +L+ IDAL L ++ + + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLNQIMEG-HLEEIIDALTLSEQTEKLKELNN 355
>gi|260772290|ref|ZP_05881206.1| peptide chain release factor 1 [Vibrio metschnikovii CIP 69.14]
gi|260611429|gb|EEX36632.1| peptide chain release factor 1 [Vibrio metschnikovii CIP 69.14]
Length = 362
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/323 (46%), Positives = 222/323 (68%), Gaps = 4/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q++ + + E +D +M +MA +E+ A E +RL +
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDFVAAEEMTKE--DDAEMREMAQDEMKAAKAEIERLSA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY R+++KKGW+ EV+ +E+
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSASEA 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG LKFESG HRVQRVP TE GRVHTSA +VA++P+ E ++
Sbjct: 157 EHGGYKEMIAKVNGDGAYGVLKFESGGHRVQRVPATESQGRVHTSACTVAVMPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKA+ VL
Sbjct: 217 PEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E + S R +GSGDRS+RIRTYN+PQ RV+DHR+ +T + ++++ME
Sbjct: 277 GARIVQAEEKKRAAEISDTRRNLLGSGDRSDRIRTYNYPQSRVSDHRINLTIYRLNEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G +L ID ++ + + D +A+
Sbjct: 337 G-DLQALIDPVVQEHQADLLAAL 358
>gi|420502046|ref|ZP_15000587.1| peptide chain release factor 1 [Helicobacter pylori Hp P-41]
gi|393153326|gb|EJC53619.1| peptide chain release factor 1 [Helicobacter pylori Hp P-41]
Length = 352
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 223/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKRLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|386750513|ref|YP_006223733.1| peptide chain release factor 1 [Helicobacter pylori Shi417]
gi|384556771|gb|AFH97239.1| peptide chain release factor 1 [Helicobacter pylori Shi417]
Length = 352
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 208/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINSSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|298529663|ref|ZP_07017066.1| peptide chain release factor 1 [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511099|gb|EFI35002.1| peptide chain release factor 1 [Desulfonatronospira thiodismutans
ASO3-1]
Length = 356
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/275 (54%), Positives = 201/275 (73%), Gaps = 1/275 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D ++ ++A EL +E+ RL+ L L+P D D+++ ILE+RAGTGGEEA+LFA D
Sbjct: 69 DPEIRELAQAELETLQEEKDRLEEDLKIQLVPSDPLDDKNIILEIRAGTGGEEAALFAAD 128
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++++ WK EV+ + E+ G KE A+ISG VY +LK+ESG+HRVQRVP T
Sbjct: 129 LFRMYFRYAEERSWKVEVLNMQETGTGGIKEVIASISGKKVYSRLKYESGVHRVQRVPET 188
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E GRVHTSAV+VAILP+A+EVDV + DLR+D +R+ G GGQ NTT+SAVR+THIPT
Sbjct: 189 ESQGRVHTSAVTVAILPEAEEVDVNIEPNDLRVDVFRASGPGGQSVNTTDSAVRITHIPT 248
Query: 313 GMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYN 372
G+ +S QDE+SQH N+AKALKVL ++L ++ R Q+GSGDRSERIRTYN
Sbjct: 249 GLVVSCQDEKSQHKNRAKALKVLRSRLLQIMEEEQKREYDDNRRAQVGSGDRSERIRTYN 308
Query: 373 FPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
FPQ RVTDHR+ +T + + +M+G +LD ID L+
Sbjct: 309 FPQSRVTDHRINLTLYNLESVMQG-HLDGIIDPLV 342
>gi|225027777|ref|ZP_03716969.1| hypothetical protein EUBHAL_02036 [Eubacterium hallii DSM 3353]
gi|224954923|gb|EEG36132.1| peptide chain release factor 1 [Eubacterium hallii DSM 3353]
Length = 359
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 193/245 (78%), Gaps = 1/245 (0%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD D+++ I+E+RAG GG+EA+LFA ++++MY+ Y++ K WK E + V E+ + G+
Sbjct: 99 LLPKDPNDDKNVIVEIRAGAGGDEAALFAAEIYRMYKNYAESKRWKTEFIDVNENGIGGF 158
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE S I+G G Y +LK+ESG+HRVQR+P TE GR+HTS ++VAI+P+A+EVDV+L
Sbjct: 159 KEVSFMINGQGAYSRLKYESGVHRVQRIPATESGGRIHTSTITVAIMPEAEEVDVQLDMN 218
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
D R D +R+ G+GGQ NTT+SAVR+THIPTG+ IS QDE+SQ NK KA+KVL A+LY+
Sbjct: 219 DCRFDVFRASGNGGQCVNTTDSAVRLTHIPTGIVISCQDEKSQLKNKDKAIKVLRARLYD 278
Query: 342 MERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDI 401
+E+S+ H + ++LR QIG+GDR+E+IRTYNFPQGRVTDHR+ +T H + D++ G +LD
Sbjct: 279 LEQSKAHDAEAELRKSQIGTGDRAEKIRTYNFPQGRVTDHRIKLTLHRLDDILNG-DLDE 337
Query: 402 FIDAL 406
ID+L
Sbjct: 338 IIDSL 342
>gi|167038767|ref|YP_001661752.1| peptide chain release factor 1 [Thermoanaerobacter sp. X514]
gi|300913648|ref|ZP_07130965.1| peptide chain release factor 1 [Thermoanaerobacter sp. X561]
gi|307723337|ref|YP_003903088.1| peptide chain release factor 1 [Thermoanaerobacter sp. X513]
gi|238687578|sp|B0K1F7.1|RF1_THEPX RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166853007|gb|ABY91416.1| peptide chain release factor 1 [Thermoanaerobacter sp. X514]
gi|300890333|gb|EFK85478.1| peptide chain release factor 1 [Thermoanaerobacter sp. X561]
gi|307580398|gb|ADN53797.1| peptide chain release factor 1 [Thermoanaerobacter sp. X513]
Length = 356
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 242/356 (67%), Gaps = 5/356 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + D + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVNEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S D+++ +MA EEL +++++L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSNDEELKEMAEEELSQLEEKKEKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGSYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D+++D +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKVDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVRVTHIPTG+ ++ QDERSQ N+ +ALK+L AKLYEM ++ R Q+G+G
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAETRKSQVGTG 298
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+RSERIRTYN+PQGRVTDHR+G+T + + ++++G +LD IDAL+L + + + +
Sbjct: 299 ERSERIRTYNYPQGRVTDHRIGLTLYRLQEVLDG-DLDEIIDALILNDQAEKLKNM 353
>gi|77463465|ref|YP_352969.1| peptide chain release factor 1 [Rhodobacter sphaeroides 2.4.1]
gi|119361594|sp|Q3J2B6.1|RF1_RHOS4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|77387883|gb|ABA79068.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodobacter
sphaeroides 2.4.1]
Length = 351
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/304 (50%), Positives = 217/304 (71%), Gaps = 12/304 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL--------QSLLLKSL 162
+EL+ EI ++ + + +E + ML E LA DE L Q+L L +L
Sbjct: 38 AELKPVVVEISAYRTALEDLAEAEAMLS-DPEMRALAEDEIPALRARIPGMEQALRL-AL 95
Query: 163 LPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222
LPKD AD R ILE+R GTGGEEA+LFA D+ +MY+RY++ +GW+FE++ + S+L G +
Sbjct: 96 LPKDAADARPAILEIRPGTGGEEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIR 155
Query: 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED 282
EA+A + G G + +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D
Sbjct: 156 EATARVEGEGAFARLKYESGVHRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAAD 215
Query: 283 LRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM 342
+RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+ A++VL A+LY++
Sbjct: 216 IRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIIVT-SSEKSQHRNREIAMQVLRARLYDL 274
Query: 343 ERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF 402
ER R+ +RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T +A+ +M G +L
Sbjct: 275 ERQRLADARSADRKAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYALPQIMAG-DLSEV 333
Query: 403 IDAL 406
I AL
Sbjct: 334 ISAL 337
>gi|343518805|ref|ZP_08755793.1| peptide chain release factor 1 [Haemophilus pittmaniae HK 85]
gi|343393384|gb|EGV05941.1| peptide chain release factor 1 [Haemophilus pittmaniae HK 85]
Length = 361
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/331 (47%), Positives = 226/331 (68%), Gaps = 11/331 (3%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L T + + L+ + E K+M +M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWNQLNTNIADAE----LMLDDPEMKEMAEMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVSGDGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH NKAK
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAK 270
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ VL +++ + E+ R ++ +R +GSGDRS++IRTYN+PQGRVTDHR+ +T + +
Sbjct: 271 AMSVLASRIVQAEQERQAAEQTDMRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTLYRL 330
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFGST 421
++M G+ +D I ++ + + D +A+ +
Sbjct: 331 DEVMNGK-IDELIQPIITEYQADQLAALSES 360
>gi|258422882|ref|ZP_05685782.1| peptide chain release factor 1 [Staphylococcus aureus A9635]
gi|417891518|ref|ZP_12535580.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21200]
gi|418283285|ref|ZP_12896036.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21202]
gi|418308964|ref|ZP_12920544.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21194]
gi|418560739|ref|ZP_13125248.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21252]
gi|418889924|ref|ZP_13444052.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418994816|ref|ZP_13542449.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG290]
gi|257846906|gb|EEV70920.1| peptide chain release factor 1 [Staphylococcus aureus A9635]
gi|341851935|gb|EGS92837.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21200]
gi|365167933|gb|EHM59300.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21202]
gi|365235966|gb|EHM76871.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21194]
gi|371971161|gb|EHO88568.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21252]
gi|377741749|gb|EHT65735.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG290]
gi|377751241|gb|EHT75174.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 358
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIEEMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEVEMLKEESSGIKAELPNIEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG +L+ IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTDKLKELNN 355
>gi|399925829|ref|ZP_10783187.1| peptide chain release factor 1 [Myroides injenensis M09-0166]
Length = 357
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/346 (47%), Positives = 226/346 (65%), Gaps = 4/346 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ I++R + +L+ QP+ A Y + NKE + L+ + +E T + ID
Sbjct: 1 MLDRLQIIKQRFDEVSDLIIQPDVIADQKRYVQLNKEYKDLKQLVEKRAEYITLKGNIDE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+I + S D +M++MA +L A D L+ + L+PKD D ++ ++EVRAGTG
Sbjct: 61 ANEIIADGS-DAEMVEMAKMQLDEAKDRLPELEEEIKFLLIPKDPEDAKNVMVEVRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EAS+FA D+++MY +Y + +GW+ VV V E GYKE +SG VYG LKFE+G
Sbjct: 120 GDEASIFAGDLYRMYTKYCESRGWRTSVVDVNEGTAGGYKEVVFEVSGEDVYGTLKFEAG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +V +LP+A+E DV + D+RID + S G GGQ NTT
Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVHIDMNDVRIDLFCSSGPGGQSVNTTK 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ QDE+SQH NK KAL VL ++LYEME ++ +K R+ Q+ SG
Sbjct: 240 SAVRMTHIPTGLVAQCQDEKSQHKNKDKALSVLRSRLYEMELAKKQEEDAKKRNSQVSSG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
DRS +IRTYN+PQGRVTDHR+G+T + + +M G N+ ID L L
Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLDGIMNG-NIQKIIDELQL 344
>gi|420428090|ref|ZP_14927125.1| peptide chain release factor 1 [Helicobacter pylori Hp A-17]
gi|420444709|ref|ZP_14943626.1| peptide chain release factor 1 [Helicobacter pylori Hp H-42]
gi|420454265|ref|ZP_14953099.1| peptide chain release factor 1 [Helicobacter pylori Hp A-8]
gi|393045749|gb|EJB46729.1| peptide chain release factor 1 [Helicobacter pylori Hp A-17]
gi|393064329|gb|EJB65168.1| peptide chain release factor 1 [Helicobacter pylori Hp H-42]
gi|393068738|gb|EJB69540.1| peptide chain release factor 1 [Helicobacter pylori Hp A-8]
Length = 352
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 221/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|349573887|ref|ZP_08885854.1| peptide chain release factor RF1 [Neisseria shayeganii 871]
gi|348014557|gb|EGY53434.1| peptide chain release factor RF1 [Neisseria shayeganii 871]
Length = 369
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 157/341 (46%), Positives = 228/341 (66%), Gaps = 8/341 (2%)
Query: 82 LVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PEA+ Y + N+E +L + + R Q ++ + L+ D +M D
Sbjct: 33 LLGSPEATADIDHYRRLNQEHAELTPVVDTYRQYRQAQSDLAAAEELL----ADPEMKDF 88
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY R
Sbjct: 89 AAEEIDDAKAKIDTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYTR 148
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
+++++ W+ E+V ESDL GYKE A I G G Y +LKFESG HRVQRVP TE GR+H
Sbjct: 149 FAERQRWQVEIVSANESDLGGYKEVIARIVGHGAYSQLKFESGGHRVQRVPATESQGRIH 208
Query: 260 TSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE++ + L DLRIDT+R+ G+GGQH N T+SAVR+TH+P+G+ +
Sbjct: 209 TSACTVAVMPEADELETIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPSGLVVEC 268
Query: 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRV 378
QD RSQH NKA+A+KVL A+L ++++ + R IGSGDRSERIRTYN+PQGRV
Sbjct: 269 QDGRSQHANKAQAMKVLAARLNDIQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRV 328
Query: 379 TDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
TDHR+ +T H + +M+G+ +I AL+ + + + +A+ G
Sbjct: 329 TDHRINLTLHKLDFVMDGDMGEITA-ALIAEHQAEQLAAMG 368
>gi|420411425|ref|ZP_14910557.1| peptide chain release factor 1 [Helicobacter pylori NQ4228]
gi|393030214|gb|EJB31293.1| peptide chain release factor 1 [Helicobacter pylori NQ4228]
Length = 352
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD ID L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVIDPLI 344
>gi|386745600|ref|YP_006218817.1| peptide chain release factor 1 [Helicobacter pylori HUP-B14]
gi|384551849|gb|AFI06797.1| peptide chain release factor 1 [Helicobacter pylori HUP-B14]
Length = 352
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|262404524|ref|ZP_06081079.1| peptide chain release factor 1 [Vibrio sp. RC586]
gi|262349556|gb|EEY98694.1| peptide chain release factor 1 [Vibrio sp. RC586]
Length = 362
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 210/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ I+ ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIEPVIHEHQADQLAALA 359
>gi|383310198|ref|YP_005363008.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. HN06]
gi|380871470|gb|AFF23837.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. HN06]
Length = 360
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL +++ + E+ R +++ R +GSGDRS++IRT
Sbjct: 250 PTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQAQADTRRNLLGSGDRSDKIRT 309
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YN+PQGRVTDHR+ +T + + ++M G+ +D I ++ + + D +A+
Sbjct: 310 YNYPQGRVTDHRINLTVYRLDEVMNGK-IDELIQPIITEYQADQLAAL 356
>gi|257464821|ref|ZP_05629192.1| peptide chain release factor 1 [Actinobacillus minor 202]
gi|257450481|gb|EEV24524.1| peptide chain release factor 1 [Actinobacillus minor 202]
Length = 360
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 148/288 (51%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E ++L+ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIEANKAEIEQLEQNLQILLLPKDPNDEYNCFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY++ K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYAEGKRWRIEELSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKAL VL +++ ++E+ + ++ R +GSGDRS++IRT
Sbjct: 250 PTGIVVECQDERSQHKNKAKALAVLASRIVQVEKEKQAQEQADTRRNLLGSGDRSDKIRT 309
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YN+PQGRVTDHR+ +T + + ++M G+ +D I ++ + + D +A+
Sbjct: 310 YNYPQGRVTDHRINLTVYRLDEVMNGK-IDELIQPIITEYQADQLAAL 356
>gi|384887120|ref|YP_005761631.1| peptide chain release factor RF-1 [Helicobacter pylori 52]
gi|261838950|gb|ACX98715.1| peptide chain release factor RF-1 [Helicobacter pylori 52]
Length = 352
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|372273961|ref|ZP_09509997.1| peptide chain release factor 1 [Pantoea sp. SL1_M5]
gi|390433703|ref|ZP_10222241.1| peptide chain release factor 1 [Pantoea agglomerans IG1]
Length = 360
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 222/328 (67%), Gaps = 13/328 (3%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY++ R RD + ++ T Q+ +D D +M DMA EEL A ++
Sbjct: 41 EYAQLTDVTRCFRDWQQVQEDIETAQQMLD-----------DPEMRDMAQEELQEAREKS 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L LLPKD DER C +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E++
Sbjct: 90 DVLEQQLQVLLLPKDPDDERACFIEVRAGTGGDEAAIFAGDLFRMYSRYAEARRWRVEII 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + GYKE A ++G G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANEGEHGGYKEVIARVTGEGAYGRLKFESGGHRVQRVPETESQGRIHTSACTVAVMPEI 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAK
Sbjct: 210 PEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
AL VL ++++ E +R H + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + +
Sbjct: 270 ALAVLGSRIHAAEMARRHAAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTIYRL 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASF 418
++MEG+ LD I+ ++ + + D +A+
Sbjct: 330 DEVMEGK-LDSLIEPIVQEYQADQLAAL 356
>gi|237753220|ref|ZP_04583700.1| peptide chain release factor 1 [Helicobacter winghamensis ATCC
BAA-430]
gi|229375487|gb|EEO25578.1| peptide chain release factor 1 [Helicobacter winghamensis ATCC
BAA-430]
Length = 356
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 208/288 (72%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+DK++ D+A EE+ + +L++ + LLPKD D+++ LE+RAGTGG+EA +F
Sbjct: 67 DDKELGDLAKEEIKETETQNVKLEAEIKVLLLPKDPNDDKNIYLELRAGTGGDEAGIFVG 126
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+ Y RY+ KGWK E++ +E+ + GYKE A + G G Y +LK+E G HRVQRVP
Sbjct: 127 DLFRAYVRYADLKGWKVEIISSSENSVGGYKEIIALVKGKGAYSRLKYEGGTHRVQRVPA 186
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GRVHTSA++VAI+P+ D+V+V + DLRI+ +R+GG GGQ NTT+SAVR+THIP
Sbjct: 187 TESQGRVHTSAITVAIMPEVDDVEVVINPNDLRIEVFRAGGHGGQCVNTTDSAVRITHIP 246
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+++S+QDE+SQH NK KA+K+L A++YE E ++ R Q+GSGDRSERIRTY
Sbjct: 247 TGISVSMQDEKSQHKNKDKAMKILKARIYEAELEAQMEQNAEARKSQVGSGDRSERIRTY 306
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
N+PQ R+TDHRVG+T +++ ++M NLD ID ++ + +A+ + G
Sbjct: 307 NYPQNRLTDHRVGLTLYSLEEIMLSGNLDSVIDPIVAYFQAEALQNSG 354
>gi|425433306|ref|ZP_18813843.1| peptide chain release factor 1 [Helicobacter pylori GAM100Ai]
gi|410714191|gb|EKQ71672.1| peptide chain release factor 1 [Helicobacter pylori GAM100Ai]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 221/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|297582072|ref|ZP_06943991.1| peptide chain release factor 1 [Vibrio cholerae RC385]
gi|297533767|gb|EFH72609.1| peptide chain release factor 1 [Vibrio cholerae RC385]
Length = 362
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ +D ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLVDPVIHEHQADQLAALA 359
>gi|420406208|ref|ZP_14905379.1| peptide chain release factor 1 [Helicobacter pylori CPY6311]
gi|393024229|gb|EJB25340.1| peptide chain release factor 1 [Helicobacter pylori CPY6311]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 219/313 (69%), Gaps = 3/313 (0%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELCLAIDEEKRL 154
K+L +L I E+ KE + I E E DK++ ++A EEL + ++ L
Sbjct: 32 KKLTELSKEQSFIEEISVASKEYLSVLENIKENKELLEDKELSELAKEELKILETKKSDL 91
Query: 155 QSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT 214
++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V +
Sbjct: 92 ETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSS 151
Query: 215 ESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV 274
E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V
Sbjct: 152 ENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDV 211
Query: 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKV 334
+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK+
Sbjct: 212 EVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKI 271
Query: 335 LCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMM 394
L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++M
Sbjct: 272 LKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIM 331
Query: 395 EGENLDIFIDALL 407
NLD I+ L+
Sbjct: 332 LSGNLDEVINPLI 344
>gi|444428527|ref|ZP_21223851.1| peptide chain release factor 1 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238236|gb|ELU49853.1| peptide chain release factor 1 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 362
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 231/343 (67%), Gaps = 6/343 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ +E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSSEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ VL A++ + E R S R +GSGDRS+RIRTYN+PQ
Sbjct: 257 VECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GRV+DHR+ +T + ++++MEG +L ID ++ + + D +A+
Sbjct: 317 GRVSDHRINLTIYRLNEVMEG-DLQSLIDPVVQEHQADQLAAL 358
>gi|350530483|ref|ZP_08909424.1| peptide chain release factor 1 [Vibrio rotiferianus DAT722]
Length = 362
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/344 (44%), Positives = 230/344 (66%), Gaps = 6/344 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLVAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLADELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ VL A++ + E R S R +GSGDRS+RIRTYN+PQ
Sbjct: 257 VECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GRV+DHR+ +T + ++++MEG +L ID +L + + D +A+
Sbjct: 317 GRVSDHRINLTIYRLNEVMEG-DLQSLIDPVLQEHQADQLAALA 359
>gi|385221579|ref|YP_005770712.1| peptide chain release factor 1 [Helicobacter pylori SouthAfrica7]
gi|317010358|gb|ADU84105.1| peptide chain release factor 1 [Helicobacter pylori SouthAfrica7]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/322 (47%), Positives = 222/322 (68%), Gaps = 3/322 (0%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELC 145
S AE K+L +L I E+ T KE + I E E DK++ ++A EEL
Sbjct: 23 SSAEVVNDIKKLTELSKEQSSIEEISTASKEYLSVLENIKENKELLEDKELSELAKEELK 82
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 83 ALEIKKSELEATIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKK 142
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++V
Sbjct: 143 WKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITV 202
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
AI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH
Sbjct: 203 AIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQH 262
Query: 326 MNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGI 385
NK KALK+L A+LYE + L+ +K R EQ+GSGDRSER+RTYN+PQ R+++HR+ +
Sbjct: 263 KNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERVRTYNYPQNRLSEHRINL 322
Query: 386 THHAISDMMEGENLDIFIDALL 407
T +++ ++M NLD I+ L+
Sbjct: 323 TLYSLEEIMLSGNLDEVINPLI 344
>gi|238792551|ref|ZP_04636184.1| Peptide chain release factor 1 [Yersinia intermedia ATCC 29909]
gi|238728186|gb|EEQ19707.1| Peptide chain release factor 1 [Yersinia intermedia ATCC 29909]
Length = 360
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +++ + ++ ED +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDLEAAEMML----EDLEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGLVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAEASERRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I ++ + + D +++
Sbjct: 335 GK-LDMLIQPIVQEYQADQLSAL 356
>gi|420466393|ref|ZP_14965150.1| peptide chain release factor 1 [Helicobacter pylori Hp H-9]
gi|393084791|gb|EJB85479.1| peptide chain release factor 1 [Helicobacter pylori Hp H-9]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|392307375|ref|ZP_10269909.1| peptide chain release factor 1 [Pseudoalteromonas citrea NCIMB
1889]
Length = 361
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 221/324 (68%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L D + + + Q ++ + ++ + D DM +MA EE A +L+
Sbjct: 39 SKEYSELEDVVKTFASYQQAQDDVATAEEMLKDS--DPDMREMAQEEYKEAKASIVQLED 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L +LPKD D + LEVRAGTGG+EA++FA D+F+MY RY++ + WK E+V V E
Sbjct: 97 DLQVLMLPKDPKDNNNVFLEVRAGTGGDEAAIFAGDLFRMYSRYAETQKWKIEIVSVNEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GY+E A ISG GVYGKLKFESG HRVQRVP TE GRVHTSA +VA++ + E +
Sbjct: 157 EHGGYREVIANISGDGVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVMAEVPEAEA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+++ + DL++DT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH N+AKA+ VL
Sbjct: 217 IQINSADLKVDTFRASGAGGQHVNKTDSAIRITHLPTGVVVECQDERSQHKNRAKAMSVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+L + E + + + R +GSGDRSERIRTYN+PQGR+TDHR+ +T + +++++
Sbjct: 277 GARLQQAEDEKRQAAEASERRNLVGSGDRSERIRTYNYPQGRITDHRINLTLYRLNEIVA 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
GE L +D LLL+ + D +A+ G
Sbjct: 337 GE-LGAIVDPLLLEHQADLLAAMG 359
>gi|386755154|ref|YP_006228371.1| peptide chain release factor 1 [Helicobacter pylori PeCan18]
gi|384561412|gb|AFI01878.1| peptide chain release factor 1 [Helicobacter pylori PeCan18]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 221/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|420438109|ref|ZP_14937086.1| peptide chain release factor 1 [Helicobacter pylori Hp H-29]
gi|393057484|gb|EJB58386.1| peptide chain release factor 1 [Helicobacter pylori Hp H-29]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 221/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|423451420|ref|ZP_17428273.1| peptide chain release factor 1 [Bacillus cereus BAG5X1-1]
gi|423471493|ref|ZP_17448237.1| peptide chain release factor 1 [Bacillus cereus BAG6O-2]
gi|423484644|ref|ZP_17461333.1| peptide chain release factor 1 [Bacillus cereus BAG6X1-2]
gi|423490475|ref|ZP_17467157.1| peptide chain release factor 1 [Bacillus cereus BtB2-4]
gi|423496198|ref|ZP_17472842.1| peptide chain release factor 1 [Bacillus cereus CER057]
gi|423497008|ref|ZP_17473625.1| peptide chain release factor 1 [Bacillus cereus CER074]
gi|423595492|ref|ZP_17571522.1| peptide chain release factor 1 [Bacillus cereus VD048]
gi|423597413|ref|ZP_17573413.1| peptide chain release factor 1 [Bacillus cereus VD078]
gi|423659819|ref|ZP_17634988.1| peptide chain release factor 1 [Bacillus cereus VDM022]
gi|423670878|ref|ZP_17645907.1| peptide chain release factor 1 [Bacillus cereus VDM034]
gi|423672895|ref|ZP_17647834.1| peptide chain release factor 1 [Bacillus cereus VDM062]
gi|401138105|gb|EJQ45680.1| peptide chain release factor 1 [Bacillus cereus BAG6X1-2]
gi|401145749|gb|EJQ53271.1| peptide chain release factor 1 [Bacillus cereus BAG5X1-1]
gi|401149583|gb|EJQ57051.1| peptide chain release factor 1 [Bacillus cereus CER057]
gi|401163209|gb|EJQ70559.1| peptide chain release factor 1 [Bacillus cereus CER074]
gi|401221796|gb|EJR28407.1| peptide chain release factor 1 [Bacillus cereus VD048]
gi|401238945|gb|EJR45377.1| peptide chain release factor 1 [Bacillus cereus VD078]
gi|401295165|gb|EJS00790.1| peptide chain release factor 1 [Bacillus cereus VDM034]
gi|401303958|gb|EJS09517.1| peptide chain release factor 1 [Bacillus cereus VDM022]
gi|401310995|gb|EJS16303.1| peptide chain release factor 1 [Bacillus cereus VDM062]
gi|402429238|gb|EJV61326.1| peptide chain release factor 1 [Bacillus cereus BtB2-4]
gi|402431510|gb|EJV63575.1| peptide chain release factor 1 [Bacillus cereus BAG6O-2]
Length = 355
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 239/355 (67%), Gaps = 7/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE + + + +KE ++D++ + E + ++++
Sbjct: 1 MLDRLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDIQDTVEVYREYKDVREQLRD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K+++ E D DM DM EE+ +EK L L L+PKD D+++ I+EVR G
Sbjct: 61 AKAML-EDKLDADMRDMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+++MY RY++ +GWK E++ + ++L GYKE I+G G + KLKFE+G
Sbjct: 120 GDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTS +VA+LP+A+EV++ + +D+R+DT+ S G GGQ NTT
Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTM 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ +S QDE+SQ NK KA+KVL A++Y+ R + R + +G+G
Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ---QEMDA 414
DRSERIRTYNFPQ RVTDHR+G+T + +++G+ LD FI+AL+++ Q+M+A
Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGK-LDDFINALVMEDQAQKMEA 353
>gi|188526883|ref|YP_001909570.1| peptide chain release factor 1 [Helicobacter pylori Shi470]
gi|238691882|sp|B2URQ8.1|RF1_HELPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|188143123|gb|ACD47540.1| peptide chain release factor 1 [Helicobacter pylori Shi470]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 208/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINSSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|304397559|ref|ZP_07379436.1| peptide chain release factor 1 [Pantoea sp. aB]
gi|440758586|ref|ZP_20937746.1| Peptide chain release factor 1 [Pantoea agglomerans 299R]
gi|304354731|gb|EFM19101.1| peptide chain release factor 1 [Pantoea sp. aB]
gi|436427692|gb|ELP25369.1| Peptide chain release factor 1 [Pantoea agglomerans 299R]
Length = 360
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 222/328 (67%), Gaps = 13/328 (3%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY++ R RD + ++ T Q+ +D D +M DMA EEL A ++
Sbjct: 41 EYAQLTDVTRCFRDWQQVQEDIETAQQMLD-----------DPEMRDMAQEELQEAREKN 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L LLPKD DER C +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E++
Sbjct: 90 DVLEQQLQVLLLPKDPDDERACFIEVRAGTGGDEAAIFAGDLFRMYSRYAEARRWRVEII 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + GYKE A ++G G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANEGEHGGYKEVIARVTGDGAYGRLKFESGGHRVQRVPETESQGRIHTSACTVAVMPEI 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAK
Sbjct: 210 PEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
AL VL ++++ E +R H + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + +
Sbjct: 270 ALAVLGSRIHAAEMARRHAAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTIYRL 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASF 418
++MEG+ LD I+ ++ + + D +A+
Sbjct: 330 DEVMEGK-LDSLIEPIVQEYQADQLAAL 356
>gi|217034576|ref|ZP_03439984.1| hypothetical protein HP9810_903g1 [Helicobacter pylori 98-10]
gi|216942931|gb|EEC22416.1| hypothetical protein HP9810_903g1 [Helicobacter pylori 98-10]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|421617613|ref|ZP_16058600.1| peptide chain release factor 1 [Pseudomonas stutzeri KOS6]
gi|409780393|gb|EKN60024.1| peptide chain release factor 1 [Pseudomonas stutzeri KOS6]
Length = 360
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/304 (49%), Positives = 218/304 (71%), Gaps = 4/304 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q++++G ++L+ + D DM +MA EE+ + + L++ L + LLPKD D R+ LE
Sbjct: 59 QQDLEGAQALLKDS--DPDMREMAEEEVAEGKAQLETLEANLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++FA D+F+MY RY++K+GW+ E++ +E + GYKE + + G VY K
Sbjct: 117 IRAGTGGDEAAIFAGDLFRMYSRYAEKQGWRVEILSESEGEHGGYKEVISRVEGDNVYAK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + +LRIDTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAVEINPAELRIDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH N T+SA+R+TH+PTG+ + Q+ERSQH N+AKA+ L AKL + + + H S+ R
Sbjct: 237 QHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMAWLAAKLQDRQDAAAHKEISETR 296
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
+GSGDRSERIRTYNFPQGRVTDHRV +T +++++++ G ++ I+ LL + + D +
Sbjct: 297 KLLVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLNEVI-GGAVEQVIEPLLQEYQADQL 355
Query: 416 ASFG 419
A+ G
Sbjct: 356 AALG 359
>gi|424825284|ref|ZP_18250271.1| peptide chain release factor 1 [Chlamydophila abortus LLG]
gi|333410383|gb|EGK69370.1| peptide chain release factor 1 [Chlamydophila abortus LLG]
Length = 361
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 235/347 (67%), Gaps = 6/347 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++++L +R +E ++ PE +P EYS +KE +L + + + ++K +
Sbjct: 1 MQKKILEYLKRLEEVEVEISNPEIFNNPKEYSLLSKEHARLSELKNTYDRVVAQEKVLSD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K + + +D +M+ M E + L E ++L +L L+P D D+ + I+E+RAGTG
Sbjct: 61 DKQALAQ-EKDPEMIAMLEEGIQLGKAEVEKLYKILENLLVPPDPDDDLNVIMELRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LF D +MY Y+ KGWK+EV+ +ESD+ GYKE ISG GV L++E+G
Sbjct: 120 GDEAALFVGDCVRMYHLYASAKGWKYEVLSASESDIGGYKEYVMGISGTGVKRLLQYEAG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQA--DEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
HRVQRVP TE GRVHTSA++VA+LP+ D+ +V + +DL+IDT+R+ G+GGQH N
Sbjct: 180 THRVQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNV 239
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+TH+PTG+ ++ QDERSQH NKAKA+++L A++ + E R H S +RS Q+G
Sbjct: 240 TDSAVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEIQRRHKEASAMRSAQVG 299
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
SGDRSERIRTYNF Q RVTDHR+G+T +++ +MEG +LD AL+
Sbjct: 300 SGDRSERIRTYNFSQNRVTDHRIGLTLYSLDKVMEG-DLDTITSALV 345
>gi|347751863|ref|YP_004859428.1| peptide chain release factor 1 [Bacillus coagulans 36D1]
gi|347584381|gb|AEP00648.1| peptide chain release factor 1 [Bacillus coagulans 36D1]
Length = 356
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/358 (45%), Positives = 234/358 (65%), Gaps = 10/358 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE P + + +KE L++++ + E + QK++
Sbjct: 1 MFDRLQAVEDRYEKLNELLSDPEIVNDPKKLREYSKEQSDLQETVQVYREYKEVQKQLQD 60
Query: 123 LKSLIYEC--SEDKDMLDMATEELCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRA 179
KSL+ E E KDM+ EL I E E+RL+ LLL PKD DE++ I+E+R
Sbjct: 61 AKSLLSEKLDPEMKDMVKEEIHELESKIPEYEERLKILLL----PKDPNDEKNVIVEIRG 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GG+EA+LFA D+++MY RY++ +GWK +V+ + + GYKE ++G G Y KLKF
Sbjct: 117 AAGGDEAALFAGDLYRMYMRYAESQGWKIDVIEANVTGIGGYKEIVFMVNGKGAYSKLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
E+G HRVQRVP TE GR+HTS +VA+LP+A+EV+V + +D+R+DT+ S G GGQ N
Sbjct: 177 ENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEVDINEKDIRVDTFASSGPGGQSVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT SAVR+THIPTG+ +S QDE+SQ NK KA+KVL A++Y+ + R +
Sbjct: 237 TTMSAVRLTHIPTGIVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDANRKSAV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
G+GDRSERIRTYNFPQ RVTDHR+G+T + +++G+ LD IDAL+L+ + + S
Sbjct: 297 GTGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQVLDGK-LDEIIDALILEDQSKKLES 353
>gi|83951817|ref|ZP_00960549.1| peptide chain release factor 1 [Roseovarius nubinhibens ISM]
gi|83836823|gb|EAP76120.1| peptide chain release factor 1 [Roseovarius nubinhibens ISM]
Length = 349
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/329 (46%), Positives = 229/329 (69%), Gaps = 8/329 (2%)
Query: 79 LENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
E + Q A + ++ +E +LR ++ E+R + +D + D +M +
Sbjct: 14 FEFIEAQMSAGSGDIAQLGREYAELRP---VVEEIRAYRAALDAAEQAEAMLG-DPEMRE 69
Query: 139 MATEEL-CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A +EL L + R ++L L +LLPKD+AD R I+E+R GTGGEEA+LFA D+ +MY
Sbjct: 70 LAEDELRTLKAELPGREKALQL-ALLPKDEADARPAIIEIRPGTGGEEAALFAGDLLRMY 128
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
RY++ +GW+FEV+ +++L G KEA + G V+ +LK+ESG+HRVQRVP TE GR
Sbjct: 129 ARYAEARGWQFEVIEEAQTELGGIKEAVVHVKGAHVFARLKYESGVHRVQRVPETESGGR 188
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+A++VD+ + D+RIDT R+ G+GGQH NTT+SAVR+THIP+G+ ++
Sbjct: 189 IHTSAATVAVLPEAEDVDIHIDPSDIRIDTMRASGAGGQHVNTTDSAVRITHIPSGIVVT 248
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
E+SQH N+ A++VL +LY++ER ++H +RS R+ Q+GSGDRSERIRTYNFPQGR
Sbjct: 249 -SSEKSQHRNREIAMQVLKTRLYDLERQKVHDARSADRAAQVGSGDRSERIRTYNFPQGR 307
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDAL 406
+TDHR+ +T + + +M G +LD IDAL
Sbjct: 308 MTDHRINLTLYKLDQVMAG-DLDDIIDAL 335
>gi|350551845|ref|ZP_08921056.1| Peptide chain release factor 1 [Thiorhodospira sibirica ATCC
700588]
gi|349796062|gb|EGZ49853.1| Peptide chain release factor 1 [Thiorhodospira sibirica ATCC
700588]
Length = 362
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 207/285 (72%), Gaps = 2/285 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D ++ +A EEL L L+ L + LLP D D+ + +E+RAGTGG+EA+LFA D
Sbjct: 73 DPEVRALAEEELGLCEQRHAVLELDLQRHLLPTDPHDQSNIFIEIRAGTGGDEAALFAGD 132
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++++GW+ EV+ ++ES+ GYKE A I G G Y +LKFESG HRVQRVP T
Sbjct: 133 LFRMYARYAEQRGWQMEVLSMSESEQGGYKEIIARIIGHGAYSRLKFESGAHRVQRVPQT 192
Query: 253 EKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +V I+P+ DE++ ++ DLRIDTYR+ G+GGQH N T+SAVR+TH+P
Sbjct: 193 ESQGRIHTSAATVVIMPEPDEIEAPQINPADLRIDTYRASGAGGQHVNRTDSAVRLTHLP 252
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
+G+ + QDERSQH NKA+A+ +L AKL+E+E+ R ++S R +GSGDRSERIRTY
Sbjct: 253 SGIVVECQDERSQHKNKARAMSLLAAKLFEVEQKRQQDAQSATRKSLVGSGDRSERIRTY 312
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
NFPQGRVTDHR+ +T + + +MEGE LD I+ L+ + + + +A
Sbjct: 313 NFPQGRVTDHRINLTLYKLDVIMEGE-LDAVIEPLINEYQAEQLA 356
>gi|420408067|ref|ZP_14907226.1| peptide chain release factor 1 [Helicobacter pylori NQ4216]
gi|393025552|gb|EJB26658.1| peptide chain release factor 1 [Helicobacter pylori NQ4216]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 221/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|208434043|ref|YP_002265709.1| peptide chain release factor 1 [Helicobacter pylori G27]
gi|238058715|sp|B5Z680.1|RF1_HELPG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|208431972|gb|ACI26843.1| peptide chain release factor RF-1 [Helicobacter pylori G27]
Length = 352
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|289163904|ref|YP_003454042.1| peptide chain release factor 1 [Legionella longbeachae NSW150]
gi|288857077|emb|CBJ10892.1| peptide chain release factor 1 [Legionella longbeachae NSW150]
Length = 362
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/291 (50%), Positives = 210/291 (72%), Gaps = 2/291 (0%)
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
EDK++ MA EEL A + + L L L+PKD DER+ LE+RAGTGG+EA++F
Sbjct: 70 AGEDKELAAMADEELASAKRQVEELDEQLQWHLIPKDPDDERNIYLEIRAGTGGDEAAIF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY++++GW+ E++ + + GYKE ISG VY +LKFESG HRVQRV
Sbjct: 130 AGDLYRMYIRYAEEQGWQQELISASHGEHGGYKEIITRISGNAVYSQLKFESGAHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GRVHTSA +VAILP+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+T
Sbjct: 190 PETESQGRVHTSACTVAILPEVDEIDDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRIT 249
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPTG+ + QDERSQH N++KA+ +L +L + E+S+ +++ R +G+GDRSERI
Sbjct: 250 HIPTGVVVECQDERSQHKNRSKAMSLLKTRLLDAEQSKQRKEQAQTRKSLVGTGDRSERI 309
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RTYN+PQGR+TDHR+ +T + ++D+MEG+ L + ++ L + + +A G
Sbjct: 310 RTYNYPQGRLTDHRINLTIYQLNDVMEGK-LSLVVEPLKREYHAELLAELG 359
>gi|354597469|ref|ZP_09015486.1| Peptide chain release factor 1 [Brenneria sp. EniD312]
gi|353675404|gb|EHD21437.1| Peptide chain release factor 1 [Brenneria sp. EniD312]
Length = 360
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 231/351 (65%), Gaps = 8/351 (2%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A++ R ++ L+ +P A + ++E +L D + R Q++I + ++
Sbjct: 11 ALQERHEEVQALLGEPNVIADMDRFRALSREYAQLTDITRCFQKWRQVQEDIQTAEMML- 69
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+D +M +MA EEL A + L+ L LLPKD DER C LEVRAGTGG+EA++
Sbjct: 70 ---DDAEMREMAQEELKQAKLTGEELEQQLQLLLLPKDPDDERGCFLEVRAGTGGDEAAI 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MY RY++ + W+ EV+ ++ + GYKE A ISG GVYG+LKFESG HRVQR
Sbjct: 127 FAGDLFRMYSRYAETRRWRVEVISASDGEHGGYKEIIAKISGDGVYGQLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ E ++ + DLRIDT+RS G+GGQH NTT+SA+R+
Sbjct: 187 VPATESQGRIHTSACTVAVMPEVPEAELPEISPADLRIDTFRSSGAGGQHVNTTDSAIRI 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QDERSQH NKAKAL VL A++ E R + R +GSGDRS+R
Sbjct: 247 THLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEMQRRQQEEASTRRNLLGSGDRSDR 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
IRTYNFPQGRVTDHR+ +T + + + MEG LD+ I ++ + + D +A+
Sbjct: 307 IRTYNFPQGRVTDHRINLTLYRLDEAMEG-KLDMLIQPVVQEYQADLLAAL 356
>gi|350427219|ref|XP_003494690.1| PREDICTED: peptide chain release factor 1-like [Bombus impatiens]
Length = 361
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 225/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L D ++ S+ + Q++I+ + ++ +D +M +MA EEL A E L +
Sbjct: 39 SKEYAQLTDVVNCFSDWKQTQEDIETAEMML----DDPEMAEMAQEELQQAKVRELDLAN 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C +EVRAGTGG+EA++FA D+F+MY RY++ K W+ EV+ +E
Sbjct: 95 QLQLLLLPKDPNDDRNCFVEVRAGTGGDEAAIFAGDLFRMYTRYAESKRWRIEVMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE +SG G YG +KFESG HRVQRVP TE GR+HTSA +VA+LP+ E ++
Sbjct: 155 EHGGYKEIILLVSGDGAYGHMKFESGGHRVQRVPETESQGRIHTSACTVAVLPEIPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E + + R +GSGDRS+RIRTYN+PQGRVTDHR+ +T + + ++M+
Sbjct: 275 AARIQDAEIQKRQQEEASTRRNLLGSGDRSDRIRTYNYPQGRVTDHRINLTIYRLDEVMQ 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ L++ ID ++ + + D +A+
Sbjct: 335 GK-LEMLIDPIIQEYQADQLAAL 356
>gi|258453172|ref|ZP_05701163.1| peptide chain release factor 1 [Staphylococcus aureus A5948]
gi|257859118|gb|EEV81975.1| peptide chain release factor 1 [Staphylococcus aureus A5948]
Length = 358
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKGKKEELADIEEMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+LY+M+ + R +G+GDRSERIR
Sbjct: 247 LPTGV-IATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG +L+ IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTLQKLGQIMEG-HLEEIIDALTLSEQTDKLKELNN 355
>gi|366053830|ref|ZP_09451552.1| peptide chain release factor 1 [Lactobacillus suebicus KCTC 3549]
Length = 360
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 238/344 (69%), Gaps = 4/344 (1%)
Query: 67 QRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
+++ A+ R L L++ P+ A ++ K +KE LRD++ +E + ++I +
Sbjct: 6 EKLQAVADRYDELNELISDPDVIADTQKFMKLSKEEGSLRDTVEKYNEYKKINQQISDDE 65
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
L+ E D +M ++ EEL + ++ ++L+ L LLPKD D+++ I+E+ GG+
Sbjct: 66 ELLREKL-DSEMEELTKEELSDSKEQLEKLEQELRVLLLPKDPNDDKNIIMEIHGAAGGD 124
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EASLFA D+F+MY RY++K+GW EVV E+++ G+KE I+G VY KLK+E+G H
Sbjct: 125 EASLFAADLFEMYSRYAEKQGWTIEVVDRNETEVGGFKEIVLMITGDSVYSKLKYENGAH 184
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TE +GRVHTS +V ++P+A++VD+ L +D+R D YRS G+GGQH N T+SA
Sbjct: 185 RVQRVPVTESAGRVHTSTATVGVMPEAEDVDIDLDPKDIRTDVYRSSGAGGQHINKTSSA 244
Query: 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDR 364
VR+TH+PTG+ +++QD+RSQ N+ KA+++L +++Y+ + + + ++ R ++G+GDR
Sbjct: 245 VRMTHLPTGIVVAMQDQRSQQQNRVKAMQILKSRVYDYYQQKEQSAYNEQRKSKVGTGDR 304
Query: 365 SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
SERIRTYN+PQ RVTDHR+G+T + + +M GE LD IDAL++
Sbjct: 305 SERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGE-LDEIIDALVI 347
>gi|336115487|ref|YP_004570254.1| peptide chain release factor 1 [Bacillus coagulans 2-6]
gi|335368917|gb|AEH54868.1| peptide chain release factor 1 [Bacillus coagulans 2-6]
Length = 356
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 163/358 (45%), Positives = 234/358 (65%), Gaps = 10/358 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE P + + +KE L++++ + E + QK++
Sbjct: 1 MFDRLQAVEDRYEKLNELLSDPEIVNDPKKLREYSKEQSDLQETVQVYREYKEVQKQLRD 60
Query: 123 LKSLIYEC--SEDKDMLDMATEELCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRA 179
KSL+ E E KDM+ EL I E E+RL+ LLL PKD DE++ I+E+R
Sbjct: 61 AKSLLSEKLDPEMKDMVKEEIHELESKIPEYEERLKILLL----PKDPNDEKNVIVEIRG 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GG+EA+LFA D+++MY RY++ +GWK +V+ + + GYKE ++G G Y KLKF
Sbjct: 117 AAGGDEAALFAGDLYRMYTRYAESQGWKIDVIEANVTGIGGYKEIVFMVNGKGAYSKLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
E+G HRVQRVP TE GR+HTS +VA+LP+A+EV+V + +D+R+DT+ S G GGQ N
Sbjct: 177 ENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEVDINEKDIRVDTFASSGPGGQSVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT SAVR+THIPTG+ +S QDE+SQ NK KA+KVL A++Y+ + R +
Sbjct: 237 TTMSAVRLTHIPTGIVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDANRKSAV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
G+GDRSERIRTYNFPQ RVTDHR+G+T + +++G+ LD IDAL+L+ + + S
Sbjct: 297 GTGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQVLDGK-LDEIIDALILEDQSKKLES 353
>gi|331701218|ref|YP_004398177.1| peptide chain release factor 1 [Lactobacillus buchneri NRRL
B-30929]
gi|406026781|ref|YP_006725613.1| peptide chain release factor 1 [Lactobacillus buchneri CD034]
gi|329128561|gb|AEB73114.1| Peptide chain release factor 1 [Lactobacillus buchneri NRRL
B-30929]
gi|405125270|gb|AFS00031.1| bacterial peptide chain release factor 1 (bRF- 1) [Lactobacillus
buchneri CD034]
Length = 360
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/336 (43%), Positives = 227/336 (67%), Gaps = 4/336 (1%)
Query: 75 RSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE 132
R L L++ PE A ++ K +KE LRD++ + + K++D K ++ E +
Sbjct: 14 RYDELNELISDPEVIADTQKFMKLSKEEADLRDTVAAFKKYQKVSKQLDDDKEMLREKID 73
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D D+ M +E+ DE+ +L+ + LLPKD D+++ I+E+ GG+E SLFA D
Sbjct: 74 D-DLEAMVKDEITSLTDEKDKLEDQMKVMLLPKDPNDDKNIIMEIHGAAGGDEGSLFAAD 132
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F MY +Y++++GWK E++ E+++ G+KE I+G VY KLK+E+G HRVQRVP+T
Sbjct: 133 LFSMYSKYAERQGWKVEIIDKNETEVGGFKEIVLMITGDKVYSKLKYENGAHRVQRVPVT 192
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAVR+TH+PT
Sbjct: 193 ESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMTHLPT 252
Query: 313 GMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYN 372
G+ +++QDERSQ N+ KA+K+L A++Y+ + + R IG+GDRSERIRTYN
Sbjct: 253 GIVVAMQDERSQQQNRQKAMKILKARVYDYYAQQEQDQYNAERKSAIGTGDRSERIRTYN 312
Query: 373 FPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
+PQ RVTDHR+G+T + + +M GE LD IDAL++
Sbjct: 313 YPQNRVTDHRIGLTLNKLDRIMNGE-LDEIIDALIV 347
>gi|420456333|ref|ZP_14955155.1| peptide chain release factor 1 [Helicobacter pylori Hp A-16]
gi|393076431|gb|EJB77184.1| peptide chain release factor 1 [Helicobacter pylori Hp A-16]
Length = 352
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKNELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420457948|ref|ZP_14956758.1| peptide chain release factor 1 [Helicobacter pylori Hp A-26]
gi|393075469|gb|EJB76223.1| peptide chain release factor 1 [Helicobacter pylori Hp A-26]
Length = 352
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNVYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420451410|ref|ZP_14950262.1| peptide chain release factor 1 [Helicobacter pylori Hp A-6]
gi|393070268|gb|EJB71058.1| peptide chain release factor 1 [Helicobacter pylori Hp A-6]
Length = 352
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 221/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|343510411|ref|ZP_08747644.1| peptide chain release factor 1 [Vibrio scophthalmi LMG 19158]
gi|342802324|gb|EGU37758.1| peptide chain release factor 1 [Vibrio scophthalmi LMG 19158]
Length = 362
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 150/323 (46%), Positives = 224/323 (69%), Gaps = 4/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q++++ + + E +D +M +MA EE+ A + +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDLEAAEEMAKE--DDAEMREMAQEEIKDAKESIERLND 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA ++F+MY ++++KKGW+ EV+ ES
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNES 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG LKFESG HRVQRVP TE GRVHTSA +VA++ + E D+
Sbjct: 157 EQGGYKEMIAKVTGDGAYGVLKFESGGHRVQRVPETESQGRVHTSACTVAVMAEIPEADL 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA++VL
Sbjct: 217 PEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMQVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E++R S R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + ++++ME
Sbjct: 277 AARIVQAEQARRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G +L ID ++ + + D +A+
Sbjct: 337 G-DLASLIDPVIQEHQADQLAAL 358
>gi|385323702|ref|YP_005878141.1| peptide chain release factor I (RF-1) [Neisseria meningitidis 8013]
gi|261392089|emb|CAX49586.1| peptide chain release factor I (RF-1) [Neisseria meningitidis 8013]
Length = 358
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 228/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ Q EA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQSEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I DAL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TDALIAEHQAELLAAMG 357
>gi|171319081|ref|ZP_02908205.1| peptide chain release factor 1 [Burkholderia ambifaria MEX-5]
gi|171095720|gb|EDT40676.1| peptide chain release factor 1 [Burkholderia ambifaria MEX-5]
Length = 360
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 150/290 (51%), Positives = 207/290 (71%), Gaps = 2/290 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +E+ A + RL+ L K LLPKD D+R+ LE+RAGTGG+E++LFA D
Sbjct: 71 DASMRDFAEDEIRSARERMVRLEGELQKMLLPKDPNDDRNIFLEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY R+++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSERIRTY
Sbjct: 251 TGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSERIRTY 310
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
NFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G T
Sbjct: 311 NFPQGRMTDHRINLTLYRLEALMDG-DLDELIGALVTEHQAELLASLGDT 359
>gi|90581727|ref|ZP_01237514.1| peptide chain release factor 1 [Photobacterium angustum S14]
gi|90437081|gb|EAS62285.1| peptide chain release factor 1 [Vibrio angustum S14]
Length = 362
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA EE+ A E +RL L L+PKD D+R+C +E+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQEEIKEAKAEIERLADELQVLLIPKDPNDDRNCFVEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++ +GW+ E++ S+ GYKE A ++G GVYG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSKYAESRGWRIEIINENRSEQGGYKEMIAKVNGDGVYGILKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VA+LP+ E ++ + DL+IDT+R+ G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAVLPEIPEAEIPEINAGDLKIDTFRASGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E + H + R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRHAEEASTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YN+PQGRV+DHR+ +T + ++++MEG +LD I + + + D +A+
Sbjct: 312 YNYPQGRVSDHRITLTLYRLNEVMEG-DLDALIQPVFTEYQADQLAAM 358
>gi|425788711|ref|YP_007016631.1| peptide chain release factor 1 [Helicobacter pylori Aklavik117]
gi|425627026|gb|AFX90494.1| peptide chain release factor 1 [Helicobacter pylori Aklavik117]
Length = 352
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|317121004|ref|YP_004101007.1| peptide chain release factor 1 (bRF-1) [Thermaerobacter marianensis
DSM 12885]
gi|315590984|gb|ADU50280.1| bacterial peptide chain release factor 1 (bRF-1) [Thermaerobacter
marianensis DSM 12885]
Length = 381
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 223/324 (68%), Gaps = 2/324 (0%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A P + +E +L + R +++ ++L+ E ++D D T E+
Sbjct: 51 ADPRRWQPLAQERAELEPLVDAYRRWREAGADLEAARALLRE-TDDADEHAYLTAEVERL 109
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
E +RL+ L LLP+D D+RD I+E+RAGTGGEEA+LFA D+F+MY+RY++++GW+
Sbjct: 110 EAERQRLERTLRSLLLPRDPRDQRDVIMEIRAGTGGEEAALFAGDLFRMYQRYAERQGWR 169
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
EV+ TESDL G+KE A+SG G + +LK ESG+HRVQRVP+TE +GR+HTS +VA+
Sbjct: 170 TEVMAATESDLGGFKEVVFAVSGRGAFSRLKHESGVHRVQRVPVTEAAGRIHTSTATVAV 229
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+A+EV+V++ +DL IDT+ + G GGQH N T SAVR+TH PTG+ ++ QDERSQH N
Sbjct: 230 LPEAEEVEVQIDPDDLEIDTFAASGPGGQHVNKTESAVRITHKPTGIVVTCQDERSQHKN 289
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
+A+A+K+L A+L + R S+ R Q+G+G+RSE+IRTYNF + RVTDHR+G+T
Sbjct: 290 RARAMKILRARLLDYYTRRQQEELSQQRRSQVGTGERSEKIRTYNFRENRVTDHRIGLTL 349
Query: 388 HAISDMMEGENLDIFIDALLLQQE 411
+ + ++M+G +LD +DAL E
Sbjct: 350 YRLQEIMDG-DLDELLDALAAHDE 372
>gi|420496957|ref|ZP_14995518.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25]
gi|420527312|ref|ZP_15025707.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25c]
gi|420529137|ref|ZP_15027525.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25d]
gi|393114654|gb|EJC15169.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25]
gi|393135279|gb|EJC35681.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25c]
gi|393138251|gb|EJC38633.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25d]
Length = 352
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 221/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|254805442|ref|YP_003083663.1| peptide chain release factor 1 [Neisseria meningitidis alpha14]
gi|254668984|emb|CBA07320.1| peptide chain release factor 1 [Neisseria meningitidis alpha14]
Length = 358
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|421720741|ref|ZP_16160021.1| peptide chain release factor 1 [Helicobacter pylori R046Wa]
gi|407219333|gb|EKE89150.1| peptide chain release factor 1 [Helicobacter pylori R046Wa]
Length = 352
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 222/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSD 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|385216848|ref|YP_005778324.1| peptide chain release factor 1 [Helicobacter pylori F16]
gi|317176897|dbj|BAJ54686.1| peptide chain release factor 1 [Helicobacter pylori F16]
Length = 352
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/322 (47%), Positives = 222/322 (68%), Gaps = 3/322 (0%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELC 145
S AE K+L +L I E+ KE + I E E DK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSFIEEISITSKEYLSVLENIKENKELLEDKELSELAKEELK 82
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 83 ILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKK 142
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++V
Sbjct: 143 WKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITV 202
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
AI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH
Sbjct: 203 AIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQH 262
Query: 326 MNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGI 385
NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +
Sbjct: 263 KNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINL 322
Query: 386 THHAISDMMEGENLDIFIDALL 407
T +++ ++M NLD I+ L+
Sbjct: 323 TLYSLEEIMLSGNLDEVINPLI 344
>gi|416242626|ref|ZP_11633662.1| peptide chain release factor 1 [Moraxella catarrhalis BC7]
gi|326571210|gb|EGE21234.1| peptide chain release factor 1 [Moraxella catarrhalis BC7]
Length = 359
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 158/329 (48%), Positives = 225/329 (68%), Gaps = 7/329 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELCLAIDEEKR 153
NK+ R+L +SE+ T ++ ++ + +E D +M +MA +E+ +A +
Sbjct: 32 NKKFRELSMEHSDLSEITTTWQDFVQAEADLQTANELLSDPEMKEMALDEIEVARANIET 91
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L +LPKD D+ LE+RAGTGG+EA++F+ D+F+MY++Y+Q +GW+ EV+
Sbjct: 92 LEERLNVMMLPKDPNDKATAFLEIRAGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSA 151
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E + GYKE A +SG+GVYG+LKFESG HRVQRVP TE GRVHTSA +VA++P+ E
Sbjct: 152 NEGEHGGYKEIIARVSGIGVYGRLKFESGAHRVQRVPATESQGRVHTSACTVAVMPEV-E 210
Query: 274 VD--VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+D V + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ Q ERSQH NK KA
Sbjct: 211 IDDTVEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVAECQQERSQHANKEKA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+K+L A++ + + + S +R +GSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 271 MKMLVARIQQAKVQAQIDATSDMRRNLVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLD 330
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFGS 420
+MEG +L +D+LL + D +AS G+
Sbjct: 331 AIMEG-DLTELLDSLLREHHADLMASVGA 358
>gi|308186585|ref|YP_003930716.1| peptide chain release factor 1 (RF-1) [Pantoea vagans C9-1]
gi|308057095|gb|ADO09267.1| Peptide chain release factor 1 (RF-1) [Pantoea vagans C9-1]
Length = 360
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 222/328 (67%), Gaps = 13/328 (3%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY++ R RD + ++ T Q+ +D D +M DMA EEL A ++
Sbjct: 41 EYAQLTDVTRCFRDWQQVQEDIETAQQMLD-----------DPEMRDMAQEELQEAREKS 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L LLPKD DER C +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E+V
Sbjct: 90 DVLEQQLQVLLLPKDPDDERACFIEVRAGTGGDEAAIFAGDLFRMYSRYAEARRWRVEIV 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + GYKE A ++G G YG++KFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANEGEHGGYKEVIARVTGDGAYGRMKFESGGHRVQRVPETESQGRIHTSACTVAVMPEI 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAK
Sbjct: 210 PEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
AL VL ++++ E +R H + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + +
Sbjct: 270 ALAVLGSRIHAAEMARRHAAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTIYRL 329
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASF 418
++MEG+ LD I+ ++ + + D +A+
Sbjct: 330 DEVMEGK-LDSLIEPIVQEYQADQLAAL 356
>gi|423520840|ref|ZP_17497313.1| peptide chain release factor 1 [Bacillus cereus HuA4-10]
gi|423557156|ref|ZP_17533459.1| peptide chain release factor 1 [Bacillus cereus MC67]
gi|401179937|gb|EJQ87100.1| peptide chain release factor 1 [Bacillus cereus HuA4-10]
gi|401193527|gb|EJR00532.1| peptide chain release factor 1 [Bacillus cereus MC67]
Length = 355
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 239/355 (67%), Gaps = 7/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE + + + +KE ++D++ + E + ++++
Sbjct: 1 MLDRLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDIQDTVEVYREYKDVREQLRD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K+++ E D DM DM EE+ +EK L L L+PKD D+++ I+EVR G
Sbjct: 61 AKAML-EDKLDADMRDMVKEEVSELEGQEKVLSERLKVLLVPKDPNDDKNVIVEVRGAAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+++MY RY++ +GWK E++ + ++L GYKE I+G G + KLKFE+G
Sbjct: 120 GDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTS +VA+LP+A+EV++ + +D+R+DT+ S G GGQ NTT
Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTM 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ +S QDE+SQ NK KA+KVL A++Y+ R + R + +G+G
Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ---QEMDA 414
DRSERIRTYNFPQ RVTDHR+G+T + +++G+ LD FI+AL+++ Q+M+A
Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGK-LDDFINALVMEDQAQKMEA 353
>gi|420461366|ref|ZP_14960157.1| peptide chain release factor 1 [Helicobacter pylori Hp H-3]
gi|393081882|gb|EJB82600.1| peptide chain release factor 1 [Helicobacter pylori Hp H-3]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420488281|ref|ZP_14986881.1| peptide chain release factor 1 [Helicobacter pylori Hp P-11]
gi|393108852|gb|EJC09384.1| peptide chain release factor 1 [Helicobacter pylori Hp P-11]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 233/349 (66%), Gaps = 8/349 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I+ +++ +I RR L L+ S AE K L +L I E+ KE
Sbjct: 1 MSILAEKLSSILRRYDELTALL-----SSAEVVSDIKRLTELSKEQSSIEEISVASKEYL 55
Query: 122 GLKSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ I E E DK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+R
Sbjct: 56 SVLENIKENKELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LK
Sbjct: 116 AGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLK 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ
Sbjct: 176 FEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ
Sbjct: 236 NTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQ 295
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 296 VGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|303248208|ref|ZP_07334471.1| peptide chain release factor 1 [Desulfovibrio fructosovorans JJ]
gi|302490346|gb|EFL50257.1| peptide chain release factor 1 [Desulfovibrio fructosovorans JJ]
Length = 357
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/283 (54%), Positives = 204/283 (72%), Gaps = 1/283 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M ++A E+ + L++ L LLPKD DE++ +LE+RAGTGGEEA+LFA D
Sbjct: 69 DPEMRELALAEVRTIREALPELEARLKLLLLPKDPMDEKNILLEIRAGTGGEEAALFAGD 128
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++ K WK E++ +E+ G+KE A ISG VY +LK+ESG HRVQRVP T
Sbjct: 129 LFRMYSRYAETKRWKVEIMSSSETGSGGFKEVIANISGDKVYSRLKYESGAHRVQRVPAT 188
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E GR+HTSAV+VAI+P+A+EVDV + DLRID YRS G GGQ NTT+SAVRVTHIPT
Sbjct: 189 ESQGRIHTSAVTVAIMPEAEEVDVAIDPNDLRIDVYRSSGPGGQSVNTTDSAVRVTHIPT 248
Query: 313 GMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYN 372
G+ + QDE+SQH NKAKALKVL ++L + E+ + L + R Q+GSGDRSERIRTYN
Sbjct: 249 GLVVICQDEKSQHKNKAKALKVLRSRLLQAEQEKQRLEQEASRRSQVGSGDRSERIRTYN 308
Query: 373 FPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
FPQ RVTDHR+ +T + + ++EG +LD D L+ + +A+
Sbjct: 309 FPQSRVTDHRINLTLYKLEAVLEG-DLDELFDGLIAHYQSEAL 350
>gi|374308976|ref|YP_005055406.1| peptide chain release factor 1 [Granulicella mallensis MP5ACTX8]
gi|358750986|gb|AEU34376.1| peptide chain release factor 1 [Granulicella mallensis MP5ACTX8]
Length = 356
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 163/350 (46%), Positives = 236/350 (67%), Gaps = 15/350 (4%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ IE R L + P + ++ K+ R L ++ E R + +
Sbjct: 1 MFDRLDQIEERYEDLGRQLGDPTLVSDQKKFQTVAKQHRDLEPTVDKFREYRKLRDGVAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELC-----LAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
K+++ E D +M MA +EL LA EE+ L+ LLL PKD D+++ I+E+
Sbjct: 61 AKAMLTES--DAEMRAMAEDELLTLEPKLATTEEE-LKVLLL----PKDPNDDKNVIVEL 113
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EASLF +VF+MY R++++ WK EV+ T+SD+ G K+ +A G VY ++
Sbjct: 114 RAGTGGDEASLFVAEVFRMYLRFAEQHKWKVEVLSQTDSDVGGLKDVTAIFEGDKVYSQM 173
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
K+ESG+HRVQRVP TE GRVHTSA++VA+LP+A+EVDV++ +DLRIDT+ S G GGQ
Sbjct: 174 KYESGVHRVQRVPATETQGRVHTSAITVAVLPEAEEVDVKVEAKDLRIDTFCSSGPGGQS 233
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT SA+R+TH+PT +S QDE+SQ N+ KA++VL A+LYE+E R+H ++K R +
Sbjct: 234 VNTTYSAIRITHLPTNTVVSCQDEKSQIKNREKAMRVLRARLYEVEAERVHQLQAKERKQ 293
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
Q+G+GDRSE+IRTYNFPQ R+TDHR+G+T+H ++ +MEG L +DAL+
Sbjct: 294 QVGTGDRSEKIRTYNFPQNRLTDHRIGLTNHQLAMVMEG-LLQPTVDALI 342
>gi|260663282|ref|ZP_05864173.1| peptide chain release factor 1 [Lactobacillus fermentum 28-3-CHN]
gi|260552134|gb|EEX25186.1| peptide chain release factor 1 [Lactobacillus fermentum 28-3-CHN]
Length = 362
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 232/343 (67%), Gaps = 4/343 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDTE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E S D D+++M EEL + + +LQ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLREES-DPDLVEMTKEELNETKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GW EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P TE +GRVHTS +V ++P+A++VDV L +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +++QDERSQ N+AKA+++L A++Y+ + + R IG+GDRS
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDYYQQQEQSEYDAQRKNAIGTGDRS 307
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
ERIRTYN+PQ RVTDHR+G+T + + +M G +L+ I++L++
Sbjct: 308 ERIRTYNYPQNRVTDHRIGLTLNKLDKIMAG-DLEEIIESLII 349
>gi|376259649|ref|YP_005146369.1| peptide chain release factor 1 [Clostridium sp. BNL1100]
gi|373943643|gb|AEY64564.1| peptide chain release factor 1 [Clostridium sp. BNL1100]
Length = 359
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 238/355 (67%), Gaps = 4/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P+ + EY K KE L + + E KEI+
Sbjct: 1 MFDKLQAAEDRYEEISHKLSDPDVINNQDEYKKYMKEYSDLEEIVQKYREYTKVTKEIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + + DKD +M +E A ++ + ++ L ++PKD D+++ I+E+R G G
Sbjct: 61 ARELL-DQTLDKDFREMVQQEFQEAQEKLEVIKRQLKILIVPKDPNDDKNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA +F+ +Y++KK WK+E++ ++L G+KE +I G G Y +LKFESG
Sbjct: 120 GEEAALFAGVLFRAMTKYAEKKRWKYEIMDSNPTELGGFKEVVFSIEGKGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTS ++VA+LP+ +EVDV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPSDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SA+R+TH+PTG+ +S QDERSQH NK +A+K+L +KLYE+ + + ++ R Q+G+G
Sbjct: 240 SAIRITHMPTGIVVSCQDERSQHKNKDRAMKILRSKLYEIAQEQQINEVAQDRKSQVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
DRSERIRTYN+PQGRVTDHR+ +T + + +++G +LD IDAL+ + + + S
Sbjct: 300 DRSERIRTYNYPQGRVTDHRINLTLYKLEQVLDG-DLDELIDALITTDQSEKLGS 353
>gi|420518867|ref|ZP_15017312.1| peptide chain release factor 1 [Helicobacter pylori Hp H-5b]
gi|393128770|gb|EJC29210.1| peptide chain release factor 1 [Helicobacter pylori Hp H-5b]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420476750|ref|ZP_14975413.1| peptide chain release factor 1 [Helicobacter pylori Hp H-23]
gi|420480088|ref|ZP_14978732.1| peptide chain release factor 1 [Helicobacter pylori Hp P-1]
gi|420481647|ref|ZP_14980284.1| peptide chain release factor 1 [Helicobacter pylori Hp P-2]
gi|420510532|ref|ZP_15009022.1| peptide chain release factor 1 [Helicobacter pylori Hp P-1b]
gi|420512067|ref|ZP_15010550.1| peptide chain release factor 1 [Helicobacter pylori Hp P-2b]
gi|393095175|gb|EJB95780.1| peptide chain release factor 1 [Helicobacter pylori Hp H-23]
gi|393098001|gb|EJB98593.1| peptide chain release factor 1 [Helicobacter pylori Hp P-1]
gi|393098881|gb|EJB99462.1| peptide chain release factor 1 [Helicobacter pylori Hp P-2]
gi|393122273|gb|EJC22750.1| peptide chain release factor 1 [Helicobacter pylori Hp P-1b]
gi|393157130|gb|EJC57391.1| peptide chain release factor 1 [Helicobacter pylori Hp P-2b]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|346992936|ref|ZP_08861008.1| peptide chain release factor 1 [Ruegeria sp. TW15]
Length = 351
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 214/302 (70%), Gaps = 8/302 (2%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+L+ +I + L+ + +E D DM ++A EE+ + L +LLP
Sbjct: 38 SDLKPVVDQIMSWRLLVSDLAEAEAMLADPDMKELAEEEIPELQARIPEAEHALQLALLP 97
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
KD AD R +LE+R GTGG+EA+LFA D+ +MY+RYS+ +GW+FE++ SDL G KE
Sbjct: 98 KDAADARPAMLEIRPGTGGDEAALFAGDLLRMYQRYSEARGWQFEIIEEQASDLGGIKEV 157
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A I G V+ ++K+ESG+HRVQRVP TE GR+HTSA +VA+LP+A++VD+++ D+R
Sbjct: 158 VAHIKGDNVFARMKYESGVHRVQRVPETESGGRIHTSAATVAVLPEAEDVDIQIDANDIR 217
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 344
IDT RS G+GGQH NTT+SAVR+TH+P+G+ ++ E+SQH N+ A++VL +LY++ER
Sbjct: 218 IDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-SSEKSQHRNREIAMQVLKTRLYDLER 276
Query: 345 SRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFID 404
RI RS R+ Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +M+G +LD ID
Sbjct: 277 QRIDSERSADRASQVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDQVMQG-DLDEVID 335
Query: 405 AL 406
AL
Sbjct: 336 AL 337
>gi|417840267|ref|ZP_12486411.1| Peptide chain release factor 1 [Haemophilus haemolyticus M19107]
gi|341949077|gb|EGT75687.1| Peptide chain release factor 1 [Haemophilus haemolyticus M19107]
Length = 361
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 225/328 (68%), Gaps = 11/328 (3%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE + I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKVEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH NKAK
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAK 270
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+ VL +++ + E+ R ++ +R +GSGDRS++IRTYN+PQGRVTDHR+ +T + +
Sbjct: 271 AMSVLASRIVQAEQERQAAEQTDMRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRL 330
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASF 418
++M G+ +D I ++ + + D +A+
Sbjct: 331 DEVMNGK-IDELIQPIITEYQADQLAAL 357
>gi|302671177|ref|YP_003831137.1| peptide chain release factor 1 PrfA [Butyrivibrio proteoclasticus
B316]
gi|302395650|gb|ADL34555.1| peptide chain release factor 1 PrfA [Butyrivibrio proteoclasticus
B316]
Length = 357
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/327 (46%), Positives = 226/327 (69%), Gaps = 4/327 (1%)
Query: 83 VNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140
+N P A + K KE + L + +E + ++ ID +++ E S D +M +M
Sbjct: 19 LNDPSVIADQERFRKLMKEQKNLEPLVECYNEYKKCKETIDESLAMLDEES-DPEMKEML 77
Query: 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERY 200
+EL A D+ L+ L LLPKD D+++ I+E+RAG GG+EA+LFA D++++Y RY
Sbjct: 78 KDELQTAKDKIPELEDKLKILLLPKDPNDDKNVIVEIRAGVGGDEAALFAADMYRVYTRY 137
Query: 201 SQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHT 260
++++ W+ E + V + + G K S I G G Y +LKFESG+HRVQR+P TE GR+HT
Sbjct: 138 AERQNWRVETMSVEDIGIGGIKTVSFMIKGNGAYSRLKFESGVHRVQRIPATESGGRIHT 197
Query: 261 SAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQD 320
SA++VAI+P+ ++V+V + D + D +R+ G+GGQ NTT+SAVR+TH PTG+ IS QD
Sbjct: 198 SAITVAIMPEVEDVEVEIDMNDCKFDVFRASGNGGQCVNTTDSAVRLTHFPTGIVISCQD 257
Query: 321 ERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTD 380
E+SQ NKAKAL+VL AKLYE+E+ + H + ++LR Q+GSGDRSE+IRTYNF QGRVTD
Sbjct: 258 EKSQQQNKAKALRVLRAKLYELEQEKKHNNEAELRRSQVGSGDRSEKIRTYNFHQGRVTD 317
Query: 381 HRVGITHHAISDMMEGENLDIFIDALL 407
HR+G+T + I +M+G ++D ID+L+
Sbjct: 318 HRIGLTLYKIDQIMDG-DIDEIIDSLI 343
>gi|326423672|ref|NP_759262.2| peptide chain release factor 1 [Vibrio vulnificus CMCP6]
gi|32171537|sp|Q8DFF9.2|RF1_VIBVU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|46576703|sp|Q7MMY6.2|RF1_VIBVY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|319999027|gb|AAO08789.2| peptide chain release factor 1 [Vibrio vulnificus CMCP6]
Length = 362
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 150/323 (46%), Positives = 222/323 (68%), Gaps = 4/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + + Q+++ + + E +D +M +MA EE+ A + L +
Sbjct: 39 SKEYSQLEEVTKCFTAYKQAQEDLVAAEEMAKE--DDAEMREMAQEEIKAAKVAIEDLAA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY ++++K+GW+ EV+ E+
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSKFAEKRGWRIEVMSANEA 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG LKFESG HRVQRVP TE GRVHTSA +VAI+P+ E ++
Sbjct: 157 EHGGYKEMIAKVNGDGAYGFLKFESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA+ VL
Sbjct: 217 PEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E ++ S R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + +S++ME
Sbjct: 277 AARIVQAEEAKRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLSEVME 336
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G +L ID ++ + + D +A+
Sbjct: 337 G-DLQSLIDPVIQEHQADQLAAL 358
>gi|194332966|ref|YP_002014826.1| peptide chain release factor 1 [Prosthecochloris aestuarii DSM 271]
gi|238693294|sp|B4S385.1|RF1_PROA2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|194310784|gb|ACF45179.1| peptide chain release factor 1 [Prosthecochloris aestuarii DSM 271]
Length = 357
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/320 (48%), Positives = 228/320 (71%), Gaps = 3/320 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ K NKE L++ + + +++I+ + ++ + S D +M +A EE + ++
Sbjct: 31 FRKLNKEYSDLKEIVQAYDRYISNRRQIEEVLGMLAKES-DPEMKALAEEEYNELLADQP 89
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L LLPKD+AD R+ I+E+RAGTGG+EA+LFA D+ +MY+R+++++GWK E++
Sbjct: 90 ELEQQLKLLLLPKDEADSRNVIMEIRAGTGGDEAALFATDLLRMYQRFAERRGWKCELLE 149
Query: 213 VTESDLRGY-KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E++ G KEAS AISG VYG +KFESG+HRVQRVP TE GR+HTSA SVA+LP+A
Sbjct: 150 FNEANTPGACKEASMAISGHDVYGIMKFESGVHRVQRVPETETQGRIHTSAASVAVLPEA 209
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+ +R +DLR+DT+RSGG GGQ+ N +AVR+TH P+G+ ++ Q+ERSQ N+ +A
Sbjct: 210 EEVDIEIRKDDLRVDTFRSGGKGGQNVNKVETAVRITHAPSGIVVACQEERSQLQNRERA 269
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+K+L AKLY+ E + + R+ LR + SGDRS +IRTYNFPQ RVTDHR+G T HA+
Sbjct: 270 MKMLRAKLYDRELADKNKERADLRKSMVSSGDRSAKIRTYNFPQSRVTDHRIGYTSHALP 329
Query: 392 DMMEGENLDIFIDALLLQQE 411
+++G NLD I+AL L ++
Sbjct: 330 QILDG-NLDDLIEALKLYEQ 348
>gi|229014499|ref|ZP_04171617.1| Peptide chain release factor 1 [Bacillus mycoides DSM 2048]
gi|229136148|ref|ZP_04264901.1| Peptide chain release factor 1 [Bacillus cereus BDRD-ST196]
gi|229170037|ref|ZP_04297729.1| Peptide chain release factor 1 [Bacillus cereus AH621]
gi|228613462|gb|EEK70595.1| Peptide chain release factor 1 [Bacillus cereus AH621]
gi|228647307|gb|EEL03389.1| Peptide chain release factor 1 [Bacillus cereus BDRD-ST196]
gi|228746849|gb|EEL96734.1| Peptide chain release factor 1 [Bacillus mycoides DSM 2048]
Length = 358
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 238/352 (67%), Gaps = 7/352 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
R+ A+E R L L++ PE + + + +KE ++D++ + E + ++++ K+
Sbjct: 7 RLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDIQDTVEVYREYKDVREQLRDAKA 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E D DM DM EE+ +EK L L L+PKD D+++ I+EVR GG+E
Sbjct: 67 ML-EDKLDADMRDMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGDE 125
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+++MY RY++ +GWK E++ + ++L GYKE I+G G + KLKFE+G HR
Sbjct: 126 AALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAHR 185
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE GR+HTS +VA+LP+A+EV++ + +D+R+DT+ S G GGQ NTT SAV
Sbjct: 186 VQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTMSAV 245
Query: 306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRS 365
R+TH+PTG+ +S QDE+SQ NK KA+KVL A++Y+ R + R + +G+GDRS
Sbjct: 246 RLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDRS 305
Query: 366 ERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ---QEMDA 414
ERIRTYNFPQ RVTDHR+G+T + +++G+ LD FI+AL+++ Q+M+A
Sbjct: 306 ERIRTYNFPQNRVTDHRIGLTIQKLDQILQGK-LDDFINALVMEDQAQKMEA 356
>gi|170768314|ref|ZP_02902767.1| peptide chain release factor 1 [Escherichia albertii TW07627]
gi|170123080|gb|EDS92011.1| peptide chain release factor 1 [Escherichia albertii TW07627]
Length = 360
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 229/323 (70%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q++I+ + ++ +D +M +MA +EL A ++ ++L+
Sbjct: 39 SREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSEQLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERD LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDAFLEVRAGTGGDEAALFAGDLFRMYSRYAETRRWQVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEHQADQLAAL 356
>gi|385219943|ref|YP_005781415.1| peptide chain release factor 1 [Helicobacter pylori India7]
gi|317008750|gb|ADU79330.1| peptide chain release factor 1 [Helicobacter pylori India7]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420483345|ref|ZP_14981975.1| peptide chain release factor 1 [Helicobacter pylori Hp P-3]
gi|420513696|ref|ZP_15012169.1| peptide chain release factor 1 [Helicobacter pylori Hp P-3b]
gi|393102570|gb|EJC03134.1| peptide chain release factor 1 [Helicobacter pylori Hp P-3]
gi|393158159|gb|EJC58419.1| peptide chain release factor 1 [Helicobacter pylori Hp P-3b]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|296113010|ref|YP_003626948.1| peptide chain release factor 1 [Moraxella catarrhalis RH4]
gi|416156064|ref|ZP_11604303.1| peptide chain release factor 1 [Moraxella catarrhalis 101P30B1]
gi|416217640|ref|ZP_11624373.1| peptide chain release factor 1 [Moraxella catarrhalis 7169]
gi|416230455|ref|ZP_11628421.1| peptide chain release factor 1 [Moraxella catarrhalis 46P47B1]
gi|416235687|ref|ZP_11630287.1| peptide chain release factor 1 [Moraxella catarrhalis 12P80B1]
gi|416240552|ref|ZP_11632523.1| peptide chain release factor 1 [Moraxella catarrhalis BC1]
gi|416246745|ref|ZP_11635203.1| peptide chain release factor 1 [Moraxella catarrhalis BC8]
gi|416251199|ref|ZP_11637607.1| peptide chain release factor 1 [Moraxella catarrhalis CO72]
gi|416254756|ref|ZP_11638858.1| peptide chain release factor 1 [Moraxella catarrhalis O35E]
gi|421779840|ref|ZP_16216330.1| peptide chain release factor 1 [Moraxella catarrhalis RH4]
gi|295920704|gb|ADG61055.1| peptide chain release factor 1 [Moraxella catarrhalis BBH18]
gi|326560389|gb|EGE10771.1| peptide chain release factor 1 [Moraxella catarrhalis 7169]
gi|326561241|gb|EGE11604.1| peptide chain release factor 1 [Moraxella catarrhalis 46P47B1]
gi|326564062|gb|EGE14306.1| peptide chain release factor 1 [Moraxella catarrhalis 12P80B1]
gi|326565872|gb|EGE16034.1| peptide chain release factor 1 [Moraxella catarrhalis BC1]
gi|326570557|gb|EGE20597.1| peptide chain release factor 1 [Moraxella catarrhalis BC8]
gi|326573200|gb|EGE23169.1| peptide chain release factor 1 [Moraxella catarrhalis CO72]
gi|326576112|gb|EGE26028.1| peptide chain release factor 1 [Moraxella catarrhalis 101P30B1]
gi|326577062|gb|EGE26956.1| peptide chain release factor 1 [Moraxella catarrhalis O35E]
gi|407812634|gb|EKF83418.1| peptide chain release factor 1 [Moraxella catarrhalis RH4]
Length = 359
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 158/329 (48%), Positives = 225/329 (68%), Gaps = 7/329 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELCLAIDEEKR 153
NK+ R+L +SE+ T ++ ++ + +E D +M +MA +E+ +A +
Sbjct: 32 NKKFRELSMEHSDLSEITTTWQDFVQAEADLQTANELLSDPEMKEMALDEIEVARANIET 91
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L +LPKD D+ LE+RAGTGG+EA++F+ D+F+MY++Y+Q +GW+ EV+
Sbjct: 92 LEERLNVMMLPKDPNDKATAFLEIRAGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSA 151
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E + GYKE A +SG+GVYG+LKFESG HRVQRVP TE GRVHTSA +VA++P+ E
Sbjct: 152 NEGEHGGYKEIIARVSGIGVYGRLKFESGAHRVQRVPATESQGRVHTSACTVAVMPEV-E 210
Query: 274 VD--VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+D V + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ Q ERSQH NK KA
Sbjct: 211 IDDTVEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVAECQQERSQHANKEKA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+K+L A++ + + + S +R +GSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 271 MKMLVARIQQAKVQAQIDATSDMRRNLVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLD 330
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFGS 420
+MEG +L +D+LL + D +AS G+
Sbjct: 331 AIMEG-DLTELLDSLLREHHADLMASVGA 358
>gi|334704052|ref|ZP_08519918.1| peptide chain release factor 1 [Aeromonas caviae Ae398]
Length = 362
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/330 (44%), Positives = 219/330 (66%), Gaps = 4/330 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H R ++ ++ + ++ E ED D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQRFRQAEENLETTRLMLEE--EDADLREMAQEELPLAKAAFE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLP+D D+ +C LE+RAG GG+EA++FA D+F+MY RY++++GW+ +V
Sbjct: 93 EQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRVSIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNEGEHGGYKEVIAKVDGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + + + +L+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH N+AKA
Sbjct: 213 EAEQIEINPSELKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ VL A+L E R + R +GSGDRSERIRTYN+PQGR+++HR+ +T + +
Sbjct: 273 MSVLSARLQAAEDERHRAAEQSTRRNLVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLG 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFGST 421
+++EG +LD I L+ + + D +AS +
Sbjct: 333 EILEG-DLDCVITPLVQEYQADQLASLAES 361
>gi|156973549|ref|YP_001444456.1| peptide chain release factor 1 [Vibrio harveyi ATCC BAA-1116]
gi|166223617|sp|A7MY68.1|RF1_VIBHB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|156525143|gb|ABU70229.1| hypothetical protein VIBHAR_01250 [Vibrio harveyi ATCC BAA-1116]
Length = 362
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 230/343 (67%), Gaps = 6/343 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ VL A++ + E R S R +GSGDRS+RIRTYN+PQ
Sbjct: 257 VECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GRV+DHR+ +T + ++++MEG +L ID ++ + + D +A+
Sbjct: 317 GRVSDHRINLTIYRLNEVMEG-DLQSLIDPVVQEHQADQLAAL 358
>gi|421709474|ref|ZP_16148834.1| peptide chain release factor 1 [Helicobacter pylori R018c]
gi|421722728|ref|ZP_16161987.1| peptide chain release factor 1 [Helicobacter pylori R056a]
gi|407212031|gb|EKE81896.1| peptide chain release factor 1 [Helicobacter pylori R018c]
gi|407226512|gb|EKE96278.1| peptide chain release factor 1 [Helicobacter pylori R056a]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|323702617|ref|ZP_08114279.1| peptide chain release factor 1 [Desulfotomaculum nigrificans DSM
574]
gi|333924798|ref|YP_004498378.1| peptide chain release factor 1 [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532436|gb|EGB22313.1| peptide chain release factor 1 [Desulfotomaculum nigrificans DSM
574]
gi|333750359|gb|AEF95466.1| Peptide chain release factor 1 [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 356
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 157/348 (45%), Positives = 236/348 (67%), Gaps = 10/348 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E + LE ++ PE A A++ + K L + + + + + + +++
Sbjct: 1 MFAKLQALEDKFEQLEGQISDPEIIADQAKWKQLVKAHADLTEVVDVFRQYKKVRSDLEE 60
Query: 123 LKSLIYECSED--KDMLDMATEELCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E E ++M+++ EEL +E E++L+ LLL PKD DE++ I+E+R
Sbjct: 61 SKLMLEEKLEPDFREMVELEIEELSKRKEELEQKLKILLL----PKDPNDEKNVIVEIRG 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+F+MY R++++KGW+ E++ E+DL G+KE + + G G Y LKF
Sbjct: 117 GTGGEEAALFAGDLFRMYSRFAERKGWRTEIIDANETDLGGFKEITFVVEGKGAYSTLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D+RID + + G GGQ N
Sbjct: 177 ESGVHRVQRVPATESGGRIHTSAATVAVLPEAEEVDIEINPNDIRIDLFCASGPGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT SAVR+THIPTG+ +S QDE+SQH NK KA++VL A+L + + + + R +
Sbjct: 237 TTQSAVRITHIPTGIVVSCQDEKSQHKNKDKAMRVLRARLLDKAQQEQQQAIASTRKSMV 296
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
G+GDRSERIRTYNFPQ RVTDHR+G+T H + ++EG +LD I+AL+
Sbjct: 297 GTGDRSERIRTYNFPQNRVTDHRIGLTLHRLDQVLEG-DLDEIIEALI 343
>gi|262166266|ref|ZP_06034003.1| peptide chain release factor 1 [Vibrio mimicus VM223]
gi|262025982|gb|EEY44650.1| peptide chain release factor 1 [Vibrio mimicus VM223]
Length = 362
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEVPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ I+ ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIEPVIHEHQADQLAALA 359
>gi|420503640|ref|ZP_15002170.1| peptide chain release factor 1 [Helicobacter pylori Hp P-62]
gi|393155029|gb|EJC55306.1| peptide chain release factor 1 [Helicobacter pylori Hp P-62]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420454622|ref|ZP_14953452.1| peptide chain release factor 1 [Helicobacter pylori Hp A-14]
gi|393072972|gb|EJB73746.1| peptide chain release factor 1 [Helicobacter pylori Hp A-14]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 224/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKACLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|420411081|ref|ZP_14910217.1| peptide chain release factor 1 [Helicobacter pylori NQ4200]
gi|393026294|gb|EJB27394.1| peptide chain release factor 1 [Helicobacter pylori NQ4200]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420468129|ref|ZP_14966874.1| peptide chain release factor 1 [Helicobacter pylori Hp H-10]
gi|393088671|gb|EJB89317.1| peptide chain release factor 1 [Helicobacter pylori Hp H-10]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420441437|ref|ZP_14940383.1| peptide chain release factor 1 [Helicobacter pylori Hp H-36]
gi|393060498|gb|EJB61370.1| peptide chain release factor 1 [Helicobacter pylori Hp H-36]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420486702|ref|ZP_14985310.1| peptide chain release factor 1 [Helicobacter pylori Hp P-8]
gi|420520589|ref|ZP_15019020.1| peptide chain release factor 1 [Helicobacter pylori Hp P-8b]
gi|393104255|gb|EJC04812.1| peptide chain release factor 1 [Helicobacter pylori Hp P-8]
gi|393127176|gb|EJC27621.1| peptide chain release factor 1 [Helicobacter pylori Hp P-8b]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420446379|ref|ZP_14945276.1| peptide chain release factor 1 [Helicobacter pylori Hp H-43]
gi|393065251|gb|EJB66080.1| peptide chain release factor 1 [Helicobacter pylori Hp H-43]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|384893686|ref|YP_005767735.1| peptide chain release factor 1 [Helicobacter pylori Sat464]
gi|308062940|gb|ADO04827.1| peptide chain release factor 1 [Helicobacter pylori Sat464]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|109948016|ref|YP_665244.1| peptide chain release factor 1 [Helicobacter acinonychis str.
Sheeba]
gi|122973223|sp|Q17VT1.1|RF1_HELAH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|109715237|emb|CAK00245.1| peptide chain release factor RF-1 [Helicobacter acinonychis str.
Sheeba]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 141/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSELETTIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V++ + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|406913012|gb|EKD52501.1| hypothetical protein ACD_62C00003G0011 [uncultured bacterium]
Length = 353
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 152/318 (47%), Positives = 216/318 (67%), Gaps = 2/318 (0%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
+P + + KE +LR+++ E + +E+ KSL+ E +D DM MA EE+
Sbjct: 25 APRDLTAMAKEQARLRETVTTYREYKKNTQELAESKSLL-EKEKDDDMRVMAREEVTKLE 83
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
+ + L L+P D DE++ ILE+RAGTGGEEA LF D+F+MY R++ +GWK
Sbjct: 84 KRQSEFEKKLKLLLIPTDPNDEKNIILEIRAGTGGEEAGLFVADLFRMYTRFADSQGWKI 143
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
++V E+D G+KE A ++G VY KLK+ESGIHRVQRVP TE SGR+HTSAVSVAIL
Sbjct: 144 DIVSSNETDKGGFKEIIAMVTGDRVYSKLKYESGIHRVQRVPDTEASGRIHTSAVSVAIL 203
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNK 328
P+A+++++ + DLRID R+GG+GGQH N T SAVR+TH+PT + + D+RSQH NK
Sbjct: 204 PEAEDIELDIPPTDLRIDVMRAGGAGGQHVNKTESAVRITHLPTNLVVVCMDDRSQHKNK 263
Query: 329 AKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHH 388
A+A+K+L ++L + + H ++ R +GSGDRSE+IRTYNFPQ RVTDHR+G+T H
Sbjct: 264 AQAMKILRSRLLDKMQQEQHAEEAQKRKTMVGSGDRSEKIRTYNFPQSRVTDHRIGLTVH 323
Query: 389 AISDMMEGENLDIFIDAL 406
A+ ++ G +L+ D L
Sbjct: 324 ALDAVLNG-DLNRLCDPL 340
>gi|420414576|ref|ZP_14913694.1| peptide chain release factor 1 [Helicobacter pylori NQ4053]
gi|393034818|gb|EJB35871.1| peptide chain release factor 1 [Helicobacter pylori NQ4053]
Length = 352
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|28897517|ref|NP_797122.1| peptide chain release factor 1 [Vibrio parahaemolyticus RIMD
2210633]
gi|153840439|ref|ZP_01993106.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ3810]
gi|260364112|ref|ZP_05776832.1| peptide chain release factor 1 [Vibrio parahaemolyticus K5030]
gi|260897557|ref|ZP_05906053.1| peptide chain release factor 1 [Vibrio parahaemolyticus Peru-466]
gi|260903527|ref|ZP_05911922.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ4037]
gi|433657015|ref|YP_007274394.1| Peptide chain release factor 1 [Vibrio parahaemolyticus BB22OP]
gi|31076863|sp|Q87RN4.1|RF1_VIBPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|28805729|dbj|BAC59006.1| peptide chain release factor 1 [Vibrio parahaemolyticus RIMD
2210633]
gi|149745897|gb|EDM57027.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ3810]
gi|308086350|gb|EFO36045.1| peptide chain release factor 1 [Vibrio parahaemolyticus Peru-466]
gi|308110855|gb|EFO48395.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ4037]
gi|308114221|gb|EFO51761.1| peptide chain release factor 1 [Vibrio parahaemolyticus K5030]
gi|432507703|gb|AGB09220.1| Peptide chain release factor 1 [Vibrio parahaemolyticus BB22OP]
Length = 362
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 230/344 (66%), Gaps = 6/344 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEEMAKE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKDAKEAIERLADELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ VL A++ + E+ R S R +GSGDRS+RIRTYN+PQ
Sbjct: 257 VECQDERSQHKNKAKAMAVLAARIVQAEQERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GRV+DHR+ +T + ++++MEG +L ID ++ + + D +A+
Sbjct: 317 GRVSDHRINLTIYRLNEVMEG-DLQSLIDPVVQEHQADQLAALA 359
>gi|15644707|ref|NP_206877.1| peptide chain release factor 1 [Helicobacter pylori 26695]
gi|383749136|ref|YP_005424239.1| peptide chain release factor 1 [Helicobacter pylori ELS37]
gi|410023311|ref|YP_006892564.1| peptide chain release factor 1 [Helicobacter pylori Rif1]
gi|410501080|ref|YP_006935607.1| peptide chain release factor 1 [Helicobacter pylori Rif2]
gi|410681597|ref|YP_006933999.1| peptide chain release factor 1 [Helicobacter pylori 26695]
gi|419416126|ref|ZP_13956709.1| peptide chain release factor 1 [Helicobacter pylori P79]
gi|2500136|sp|P55998.1|RF1_HELPY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|2313158|gb|AAD07148.1| peptide chain release factor RF-1 (prfA) [Helicobacter pylori
26695]
gi|380873882|gb|AFF19663.1| peptide chain release factor 1 [Helicobacter pylori ELS37]
gi|384375651|gb|EIE30920.1| peptide chain release factor 1 [Helicobacter pylori P79]
gi|409893238|gb|AFV41296.1| peptide chain release factor 1 [Helicobacter pylori 26695]
gi|409894968|gb|AFV42890.1| peptide chain release factor 1 [Helicobacter pylori Rif1]
gi|409896631|gb|AFV44485.1| peptide chain release factor 1 [Helicobacter pylori Rif2]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420490087|ref|ZP_14988673.1| peptide chain release factor 1 [Helicobacter pylori Hp P-13]
gi|420523927|ref|ZP_15022337.1| peptide chain release factor 1 [Helicobacter pylori Hp P-13b]
gi|393109430|gb|EJC09961.1| peptide chain release factor 1 [Helicobacter pylori Hp P-13]
gi|393133086|gb|EJC33503.1| peptide chain release factor 1 [Helicobacter pylori Hp P-13b]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+ L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEATLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|78044074|ref|YP_361356.1| peptide chain release factor 1 [Carboxydothermus hydrogenoformans
Z-2901]
gi|119361519|sp|Q3A928.1|RF1_CARHZ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|77996189|gb|ABB15088.1| peptide chain release factor 1 [Carboxydothermus hydrogenoformans
Z-2901]
Length = 358
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/341 (45%), Positives = 224/341 (65%), Gaps = 10/341 (2%)
Query: 72 IERRSACLENLVNQPEASPAE-----YSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E + L L++ PE Y KA+ E+ ++ + + E + KEI+ + +
Sbjct: 8 LEEKYEELSRLISDPEVIADTQRWQGYVKAHAEIEEI---VQVYREYKKTVKEIEDAERM 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E D D ++ EL + + L++ L LLPKD DE++ I+E+RAG GGEEA
Sbjct: 65 LDE-KLDPDFRELVQSELHDLKERREELEAKLKILLLPKDPNDEKNVIMEIRAGAGGEEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA D+F+MY +Y+ + GWK E++ +DL G+KE I G GVY ++KFESG+HRV
Sbjct: 124 ALFAGDLFRMYSKYADRMGWKVEIMDSHPTDLGGFKEVIFTIEGKGVYSRMKFESGVHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+A+EV+V + DLRID + + G+GGQH N T SAVR
Sbjct: 184 QRVPTTESGGRIHTSTATVAVLPEAEEVEVEINPNDLRIDVFCASGAGGQHVNKTESAVR 243
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+THIPTG+ ++ QDE+SQH NK +A+K+L A+L + R + R Q+G+GDRSE
Sbjct: 244 ITHIPTGIVVTCQDEKSQHKNKERAMKILRARLLDKARQEQEAELASARKSQVGTGDRSE 303
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RIRTYNFPQ RVTDHR+G+T H + ++EG +LD IDAL+
Sbjct: 304 RIRTYNFPQNRVTDHRIGLTLHRLDAVLEG-DLDEIIDALI 343
>gi|420471558|ref|ZP_14970256.1| peptide chain release factor 1 [Helicobacter pylori Hp H-18]
gi|393092022|gb|EJB92648.1| peptide chain release factor 1 [Helicobacter pylori Hp H-18]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 220/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KRLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|388455454|ref|ZP_10137749.1| peptide chain release factor 1 [Fluoribacter dumoffii Tex-KL]
Length = 362
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 207/289 (71%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+DK++ MA EEL A + L L L+PKD DER+ LE+RAGTGG+EA++F+
Sbjct: 72 DDKELASMAAEELEGAQKQLDELDEQLQWHLIPKDPDDERNVYLEIRAGTGGDEAAIFSG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + +GW+ E++ + + GYKE ISG VY +LKFESG HRVQRVP
Sbjct: 132 DLYRMYSRYVEDQGWQQELISASHGEHGGYKEIIVRISGQAVYSQLKFESGAHRVQRVPE 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VAI+P+ DE+D +++ +DLRIDTYRS G+GGQH N T+SA+R+THI
Sbjct: 192 TESQGRVHTSACTVAIMPEVDEIDDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHI 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH N+AKA+ +L +L + E+S+ +++ R +GSGDRSERIRT
Sbjct: 252 PTGVVVECQDERSQHKNRAKAMSLLKTRLLDAEQSKQKKEQAQTRKSLVGSGDRSERIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGR+TDHR+ +T + ++D+MEG NL + I+ L + + +A G
Sbjct: 312 YNYPQGRLTDHRINLTIYQLNDVMEG-NLGLVIEPLKREYHAELLAELG 359
>gi|421714241|ref|ZP_16153562.1| peptide chain release factor 1 [Helicobacter pylori R036d]
gi|421716135|ref|ZP_16155447.1| peptide chain release factor 1 [Helicobacter pylori R037c]
gi|421717631|ref|ZP_16156933.1| peptide chain release factor 1 [Helicobacter pylori R038b]
gi|407217926|gb|EKE87755.1| peptide chain release factor 1 [Helicobacter pylori R036d]
gi|407222033|gb|EKE91836.1| peptide chain release factor 1 [Helicobacter pylori R037c]
gi|407223138|gb|EKE92931.1| peptide chain release factor 1 [Helicobacter pylori R038b]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420434965|ref|ZP_14933965.1| peptide chain release factor 1 [Helicobacter pylori Hp H-27]
gi|420505507|ref|ZP_15004023.1| peptide chain release factor 1 [Helicobacter pylori Hp P-74]
gi|393052733|gb|EJB53679.1| peptide chain release factor 1 [Helicobacter pylori Hp H-27]
gi|393117039|gb|EJC17543.1| peptide chain release factor 1 [Helicobacter pylori Hp P-74]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|420429732|ref|ZP_14928762.1| peptide chain release factor 1 [Helicobacter pylori Hp A-20]
gi|393048351|gb|EJB49318.1| peptide chain release factor 1 [Helicobacter pylori Hp A-20]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|37679115|ref|NP_933724.1| peptide chain release factor 1 [Vibrio vulnificus YJ016]
gi|320157139|ref|YP_004189518.1| peptide chain release factor 1 [Vibrio vulnificus MO6-24/O]
gi|37197857|dbj|BAC93695.1| protein chain release factor A [Vibrio vulnificus YJ016]
gi|319932451|gb|ADV87315.1| peptide chain release factor 1 [Vibrio vulnificus MO6-24/O]
Length = 363
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/323 (46%), Positives = 222/323 (68%), Gaps = 4/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + + Q+++ + + E +D +M +MA EE+ A + L +
Sbjct: 40 SKEYSQLEEVTKCFTAYKQAQEDLVAAEEMAKE--DDAEMREMAQEEIKAAKVAIEDLAA 97
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY ++++K+GW+ EV+ E+
Sbjct: 98 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSKFAEKRGWRIEVMSANEA 157
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG LKFESG HRVQRVP TE GRVHTSA +VAI+P+ E ++
Sbjct: 158 EHGGYKEMIAKVNGDGAYGFLKFESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEI 217
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
++ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH NKAKA+ VL
Sbjct: 218 PEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVL 277
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ + E ++ S R +GSGDRS+RIRTYN+PQGRV+DHR+ +T + +S++ME
Sbjct: 278 AARIVQAEEAKRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLSEVME 337
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G +L ID ++ + + D +A+
Sbjct: 338 G-DLQSLIDPVIQEHQADQLAAL 359
>gi|420433258|ref|ZP_14932267.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24]
gi|420507014|ref|ZP_15005527.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24b]
gi|420508705|ref|ZP_15007207.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24c]
gi|420532450|ref|ZP_15030813.1| peptide chain release factor 1 [Helicobacter pylori Hp M1]
gi|420534015|ref|ZP_15032366.1| peptide chain release factor 1 [Helicobacter pylori Hp M2]
gi|420535820|ref|ZP_15034162.1| peptide chain release factor 1 [Helicobacter pylori Hp M3]
gi|420537525|ref|ZP_15035855.1| peptide chain release factor 1 [Helicobacter pylori Hp M4]
gi|420539252|ref|ZP_15037571.1| peptide chain release factor 1 [Helicobacter pylori Hp M5]
gi|420541007|ref|ZP_15039315.1| peptide chain release factor 1 [Helicobacter pylori Hp M6]
gi|420542404|ref|ZP_15040701.1| peptide chain release factor 1 [Helicobacter pylori Hp M9]
gi|393052126|gb|EJB53076.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24]
gi|393119095|gb|EJC19586.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24b]
gi|393120131|gb|EJC20620.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24c]
gi|393140081|gb|EJC40454.1| peptide chain release factor 1 [Helicobacter pylori Hp M1]
gi|393142238|gb|EJC42592.1| peptide chain release factor 1 [Helicobacter pylori Hp M2]
gi|393143468|gb|EJC43812.1| peptide chain release factor 1 [Helicobacter pylori Hp M3]
gi|393145080|gb|EJC45411.1| peptide chain release factor 1 [Helicobacter pylori Hp M4]
gi|393146937|gb|EJC47262.1| peptide chain release factor 1 [Helicobacter pylori Hp M5]
gi|393147627|gb|EJC47951.1| peptide chain release factor 1 [Helicobacter pylori Hp M6]
gi|393160325|gb|EJC60572.1| peptide chain release factor 1 [Helicobacter pylori Hp M9]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|392550477|ref|ZP_10297614.1| peptide chain release factor 1 [Pseudoalteromonas spongiae
UST010723-006]
Length = 361
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/324 (47%), Positives = 218/324 (67%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L D + R + ++ + ++ + D DM +MA EE A + L+
Sbjct: 39 SKEYSELEDVTKAFNAYRQAEDDVATAEEMLKD--NDPDMREMAQEEFKEAKANIEALED 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L +LPKD D + LEVRAGTGG+EA++FA D+F+MY RY++ + WK +VV E
Sbjct: 97 ELQVLMLPKDPRDNNNVFLEVRAGTGGDEAAIFAGDLFRMYSRYAETQKWKVDVVSTNEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ G+KE A ISG GVYGKLKFESG HRVQRVP TE GRVHTSA +VA++ + E +
Sbjct: 157 EHGGFKEVIANISGEGVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVMAEVPEAEA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ + + DL+IDT+R+ G+GGQH N T+SA+R+THIPTG+ + QDERSQH NKAKAL VL
Sbjct: 217 IEINSSDLKIDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNKAKALSVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
++L + E + + R +GSGDRSERIRTYN+PQGRVTDHR+ +T + +++++E
Sbjct: 277 ASRLQQAEDEKRMAEEASERRNLVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLNEVVE 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +L +D L+L+ + D +A+ G
Sbjct: 337 G-DLGAIVDPLVLEHQADLLAAMG 359
>gi|261340150|ref|ZP_05968008.1| peptide chain release factor 1 [Enterobacter cancerogenus ATCC
35316]
gi|288317665|gb|EFC56603.1| peptide chain release factor 1 [Enterobacter cancerogenus ATCC
35316]
Length = 360
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 222/323 (68%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSKCYTDWRQVQDDIETAQMML----DDPEMREMAQEELQDAKARSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEILSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIRAAEVAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEYQADQLAAL 356
>gi|385226349|ref|YP_005786273.1| peptide chain release factor 1 [Helicobacter pylori SNT49]
gi|344331262|gb|AEN16292.1| peptide chain release factor 1 [Helicobacter pylori SNT49]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 141/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK EVV +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
+P TE GR+HTSA+++AI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 IPETESQGRIHTSAITIAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|113869288|ref|YP_727777.1| peptide chain release factor 1 [Ralstonia eutropha H16]
gi|113528064|emb|CAJ94409.1| protein chain release factor A (RF-1) [Ralstonia eutropha H16]
Length = 356
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/329 (46%), Positives = 224/329 (68%), Gaps = 6/329 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L + R Q ++ ++L+ +D +M D A +E+ A
Sbjct: 30 QYRKLSREHAELSPVAEQYGQYRQAQDDLATAQALL----DDPEMKDFAADEIASARARL 85
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ L + LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ EV+
Sbjct: 86 EGLEASLQRLLLPKDPNDDRNLLLEIRAGTGGEESALFAGDLLRMYTRYAERQRWQVEVM 145
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ SDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 146 SESASDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEA 205
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
DEV +V + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH NK K
Sbjct: 206 DEVGEVEINPADLRIDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKDK 265
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
A+KVL A++ +M+ + R IGSGDRS+RIRTYNFPQGRVTDHR+ +T + I
Sbjct: 266 AMKVLAARIKDMQTRAAQAKEASTRRNLIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKI 325
Query: 391 SDMMEGENLDIFIDALLLQQEMDAIASFG 419
+M+G ++D + AL + + D +A+ G
Sbjct: 326 DMIMDG-DMDELLSALASEHQADQLAALG 353
>gi|420439760|ref|ZP_14938720.1| peptide chain release factor 1 [Helicobacter pylori Hp H-30]
gi|393057786|gb|EJB58682.1| peptide chain release factor 1 [Helicobacter pylori Hp H-30]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 220/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KRLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|420431656|ref|ZP_14930675.1| peptide chain release factor 1 [Helicobacter pylori Hp H-16]
gi|420478528|ref|ZP_14977181.1| peptide chain release factor 1 [Helicobacter pylori Hp H-34]
gi|393049249|gb|EJB50215.1| peptide chain release factor 1 [Helicobacter pylori Hp H-16]
gi|393097302|gb|EJB97896.1| peptide chain release factor 1 [Helicobacter pylori Hp H-34]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|385218343|ref|YP_005779818.1| peptide chain release factor 1 [Helicobacter pylori Gambia94/24]
gi|317013501|gb|ADU80937.1| peptide chain release factor 1 [Helicobacter pylori Gambia94/24]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 206/279 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|207091639|ref|ZP_03239426.1| peptide chain release factor 1 [Helicobacter pylori HPKX_438_AG0C1]
gi|419418273|ref|ZP_13958616.1| peptide chain release factor 1 [Helicobacter pylori NCTC 11637 =
CCUG 17874]
gi|384374462|gb|EIE29854.1| peptide chain release factor 1 [Helicobacter pylori NCTC 11637 =
CCUG 17874]
Length = 352
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|417320522|ref|ZP_12107068.1| peptide chain release factor 1 [Vibrio parahaemolyticus 10329]
gi|328473485|gb|EGF44333.1| peptide chain release factor 1 [Vibrio parahaemolyticus 10329]
Length = 362
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 230/344 (66%), Gaps = 6/344 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEEMAKE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKDAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ VL A++ + E+ R S R +GSGDRS+RIRTYN+PQ
Sbjct: 257 VECQDERSQHKNKAKAMAVLAARIVQAEQERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GRV+DHR+ +T + ++++MEG +L ID ++ + + D +A+
Sbjct: 317 GRVSDHRINLTIYRLNEVMEG-DLQSLIDPVVQEHQADQLAALA 359
>gi|384892075|ref|YP_005766168.1| peptide chain release factor 1 [Helicobacter pylori Cuz20]
gi|308061372|gb|ADO03260.1| peptide chain release factor 1 [Helicobacter pylori Cuz20]
Length = 352
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|425790477|ref|YP_007018394.1| peptide chain release factor 1 [Helicobacter pylori Aklavik86]
gi|425628792|gb|AFX89332.1| peptide chain release factor 1 [Helicobacter pylori Aklavik86]
Length = 352
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 141/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V++ + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|15611143|ref|NP_222794.1| peptide chain release factor 1 [Helicobacter pylori J99]
gi|7388059|sp|Q9ZMZ0.1|RF1_HELPJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|4154581|gb|AAD05656.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 221/314 (70%), Gaps = 5/314 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK
Sbjct: 211 VEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALK 270
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++
Sbjct: 271 ILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEI 330
Query: 394 MEGENLDIFIDALL 407
M NLD I+ L+
Sbjct: 331 MLSGNLDEVINPLI 344
>gi|395500681|ref|ZP_10432260.1| peptide chain release factor 1 [Pseudomonas sp. PAMC 25886]
Length = 360
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/328 (46%), Positives = 226/328 (68%), Gaps = 7/328 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + ++L Q +++G ++L+ + D DM +MA EE+ A D+
Sbjct: 38 YSKEYAEVEPI---VAAYTQLLKVQADLEGAQALLKDS--DPDMREMAVEEVREAKDKLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEGDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGENVYGKLKFESGVHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH N+A+A
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQHKNRARA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ L AKL + + S + + R +GSGDRSERIRTYNF QGRVTDHRV +T +++
Sbjct: 273 MSWLSAKLNDQQTSAAANAIASERKLLVGSGDRSERIRTYNFAQGRVTDHRVNLTLYSLD 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFG 419
+++ G +D I+ LL + + D +A+ G
Sbjct: 333 EILAG-GVDAVIEPLLAEYQADQLAAIG 359
>gi|83720975|ref|YP_443437.1| peptide chain release factor 1 [Burkholderia thailandensis E264]
gi|167582488|ref|ZP_02375362.1| peptide chain release factor 1 [Burkholderia thailandensis TXDOH]
gi|257137781|ref|ZP_05586043.1| peptide chain release factor 1 [Burkholderia thailandensis E264]
gi|119361517|sp|Q2SUG2.1|RF1_BURTA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|83654800|gb|ABC38863.1| peptide chain release factor 1 [Burkholderia thailandensis E264]
Length = 360
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/291 (51%), Positives = 206/291 (70%), Gaps = 2/291 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +EL A + RL + L LLPKD DER+ +E+RAGTGG+E++LFA D
Sbjct: 71 DASMRDFAEDELRGARERMSRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSERIRTY
Sbjct: 251 TGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSERIRTY 310
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
NFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G +
Sbjct: 311 NFPQGRMTDHRINLTLYKLEQIMDG-DLDELIAALVSEHQAELLASLGDAE 360
>gi|420422962|ref|ZP_14922036.1| peptide chain release factor 1 [Helicobacter pylori Hp A-4]
gi|393042913|gb|EJB43918.1| peptide chain release factor 1 [Helicobacter pylori Hp A-4]
Length = 352
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|330811719|ref|YP_004356181.1| peptide chain release factor 1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378952822|ref|YP_005210310.1| peptide chain release factor 1 [Pseudomonas fluorescens F113]
gi|423699274|ref|ZP_17673764.1| peptide chain release factor 1 [Pseudomonas fluorescens Q8r1-96]
gi|327379827|gb|AEA71177.1| Peptide chain release factor 1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359762836|gb|AEV64915.1| Peptide chain release factor 1 [Pseudomonas fluorescens F113]
gi|387996495|gb|EIK57825.1| peptide chain release factor 1 [Pseudomonas fluorescens Q8r1-96]
Length = 360
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 154/328 (46%), Positives = 225/328 (68%), Gaps = 7/328 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A D+
Sbjct: 38 YSKEYAEVEPI---VATYKQLLKVQGDLEGAQALLKDS--DPDMREMAVEEVREAKDQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELESSLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH N+A+A
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQHKNRARA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ L AKL + + S + + R +GSGDRSERIRTYNF QGRVTDHRV +T +++
Sbjct: 273 MAWLSAKLNDQQTSAAANAIASERKLLVGSGDRSERIRTYNFAQGRVTDHRVNLTLYSLD 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFG 419
+++ G +D I+ LL + + D +A+ G
Sbjct: 333 EILAG-GVDAVIEPLLAEYQADQLAAIG 359
>gi|270157830|ref|ZP_06186487.1| peptide chain release factor 1 [Legionella longbeachae D-4968]
gi|269989855|gb|EEZ96109.1| peptide chain release factor 1 [Legionella longbeachae D-4968]
Length = 351
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 146/291 (50%), Positives = 210/291 (72%), Gaps = 2/291 (0%)
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
EDK++ MA EEL A + + L L L+PKD DER+ LE+RAGTGG+EA++F
Sbjct: 59 AGEDKELAAMADEELASAKRQVEELDEQLQWHLIPKDPDDERNIYLEIRAGTGGDEAAIF 118
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY++++GW+ E++ + + GYKE ISG VY +LKFESG HRVQRV
Sbjct: 119 AGDLYRMYIRYAEEQGWQQELISASHGEHGGYKEIITRISGNAVYSQLKFESGAHRVQRV 178
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GRVHTSA +VAILP+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+T
Sbjct: 179 PETESQGRVHTSACTVAILPEVDEIDDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRIT 238
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPTG+ + QDERSQH N++KA+ +L +L + E+S+ +++ R +G+GDRSERI
Sbjct: 239 HIPTGVVVECQDERSQHKNRSKAMSLLKTRLLDAEQSKQRKEQAQTRKSLVGTGDRSERI 298
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RTYN+PQGR+TDHR+ +T + ++D+MEG+ L + ++ L + + +A G
Sbjct: 299 RTYNYPQGRLTDHRINLTIYQLNDVMEGK-LSLVVEPLKREYHAELLAELG 348
>gi|388603011|ref|ZP_10161407.1| peptide chain release factor 1 [Vibrio campbellii DS40M4]
Length = 362
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 231/343 (67%), Gaps = 6/343 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLVAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ +E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSSEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ VL A++ + E R S R +GSGDRS+RIRTYN+PQ
Sbjct: 257 VECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GRV+DHR+ +T + ++++MEG +L ID ++ + + D +A+
Sbjct: 317 GRVSDHRINLTIYRLNEVMEG-DLQSLIDPVVQEHQADQLAAL 358
>gi|423394476|ref|ZP_17371677.1| peptide chain release factor 1 [Bacillus cereus BAG2X1-1]
gi|423405348|ref|ZP_17382497.1| peptide chain release factor 1 [Bacillus cereus BAG2X1-3]
gi|401658163|gb|EJS75662.1| peptide chain release factor 1 [Bacillus cereus BAG2X1-1]
gi|401661250|gb|EJS78719.1| peptide chain release factor 1 [Bacillus cereus BAG2X1-3]
Length = 355
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/355 (43%), Positives = 239/355 (67%), Gaps = 7/355 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE + + + +KE +++++ + E + ++++
Sbjct: 1 MLDRLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDIQETVEVYREYKDTREQLKD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K+++ E D DM DM EE+ +EK L L L+PKD D+++ I+EVR G
Sbjct: 61 AKAML-EDKLDADMRDMVKEEVSELEGQEKTLSERLKVLLVPKDPNDDKNVIVEVRGAAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+++MY RY++ +GWK E++ + ++L GYKE I+G G + KLKFE+G
Sbjct: 120 GDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTS +VA+LP+A+EV++ + +D+R+DT+ S G GGQ NTT
Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEITIHEKDVRVDTFASSGPGGQSVNTTM 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ +S QDE+SQ NK KA+KVL A++Y+ R + R + +G+G
Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ---QEMDA 414
DRSERIRTYNFPQ RVTDHR+G+T + +++G+ LD FI+AL+++ Q+M+A
Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGK-LDDFINALVMEDQAQKMEA 353
>gi|415883777|ref|ZP_11545806.1| peptide chain release factor 1 [Bacillus methanolicus MGA3]
gi|387591572|gb|EIJ83889.1| peptide chain release factor 1 [Bacillus methanolicus MGA3]
Length = 357
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/361 (45%), Positives = 233/361 (64%), Gaps = 12/361 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE P + + +KE +++++ E + +K+
Sbjct: 1 MFDRLQAVEDRYEKLNELLSDPEIVNDPKKLREYSKEQSDIQETVQTYREYKEVKKQYQD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDE-EKRLQSL---LLKSLLPKDDADERDCILEVR 178
K+++ E D +M +M EE IDE E+R++ L L LLPKD D+++ I E+R
Sbjct: 61 AKAMLEE-KLDPEMREMVKEE----IDELEERIEDLEERLKILLLPKDPNDDKNVIFEIR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
GG+EA+LFA D+++MY RY++ KGWK EV+ + + L GYKE I+G G Y +LK
Sbjct: 116 GAAGGDEAALFAGDLYRMYSRYAEMKGWKTEVIEASPTGLGGYKEIIFMITGKGAYSRLK 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FE+G HRVQRVP TE GR+HTS +VA LP+A+EV+V + +D+R+DT+ S G GGQ
Sbjct: 176 FENGAHRVQRVPETESGGRIHTSTATVACLPEAEEVEVEIHEKDIRVDTFASSGPGGQSV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT SAVR+THIPTG+ +S QDE+SQ NK KA+KVL A++Y+ R + R
Sbjct: 236 NTTMSAVRLTHIPTGIVVSCQDEKSQIKNKEKAMKVLRARIYDKYRQEAQAEYDQQRKSA 295
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+G+GDRSERIRTYNFPQ RVTDHR+G+T + ++EG LD IDAL+L + + S
Sbjct: 296 VGTGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEG-KLDELIDALILDDQSKKLESA 354
Query: 419 G 419
G
Sbjct: 355 G 355
>gi|261379805|ref|ZP_05984378.1| peptide chain release factor 1 [Neisseria subflava NJ9703]
gi|284797490|gb|EFC52837.1| peptide chain release factor 1 [Neisseria subflava NJ9703]
Length = 358
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 228/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAALLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|258621065|ref|ZP_05716099.1| Peptide chain release factor 1 [Vibrio mimicus VM573]
gi|258626137|ref|ZP_05720985.1| Peptide chain release factor 1 [Vibrio mimicus VM603]
gi|262170842|ref|ZP_06038520.1| peptide chain release factor 1 [Vibrio mimicus MB-451]
gi|449146778|ref|ZP_21777540.1| Peptide chain release factor 1 [Vibrio mimicus CAIM 602]
gi|258581492|gb|EEW06393.1| Peptide chain release factor 1 [Vibrio mimicus VM603]
gi|258586453|gb|EEW11168.1| Peptide chain release factor 1 [Vibrio mimicus VM573]
gi|261891918|gb|EEY37904.1| peptide chain release factor 1 [Vibrio mimicus MB-451]
gi|449077631|gb|EMB48603.1| Peptide chain release factor 1 [Vibrio mimicus CAIM 602]
Length = 362
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ I+ ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIEPVIHEHQADQLAALA 359
>gi|53717070|ref|YP_105275.1| peptide chain release factor 1 [Burkholderia mallei ATCC 23344]
gi|67639917|ref|ZP_00438745.1| peptide chain release factor 1 [Burkholderia mallei GB8 horse 4]
gi|121597849|ref|YP_990282.1| peptide chain release factor 1 [Burkholderia mallei SAVP1]
gi|124382410|ref|YP_001024781.1| peptide chain release factor 1 [Burkholderia mallei NCTC 10229]
gi|126447218|ref|YP_001079120.1| peptide chain release factor 1 [Burkholderia mallei NCTC 10247]
gi|251768001|ref|ZP_04820356.1| peptide chain release factor 1 [Burkholderia mallei PRL-20]
gi|254175822|ref|ZP_04882481.1| peptide chain release factor 1 [Burkholderia mallei ATCC 10399]
gi|254203239|ref|ZP_04909601.1| peptide chain release factor 1 [Burkholderia mallei FMH]
gi|254208574|ref|ZP_04914923.1| peptide chain release factor 1 [Burkholderia mallei JHU]
gi|254355790|ref|ZP_04972069.1| peptide chain release factor 1 [Burkholderia mallei 2002721280]
gi|61214592|sp|Q62DF3.1|RF1_BURMA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223532|sp|A3MFT4.1|RF1_BURM7 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223533|sp|A2RYL2.1|RF1_BURM9 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223534|sp|A1UWC9.1|RF1_BURMS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|52423040|gb|AAU46610.1| peptide chain release factor 1 [Burkholderia mallei ATCC 23344]
gi|121225647|gb|ABM49178.1| peptide chain release factor 1 [Burkholderia mallei SAVP1]
gi|124290430|gb|ABM99699.1| peptide chain release factor 1 [Burkholderia mallei NCTC 10229]
gi|126240072|gb|ABO03184.1| peptide chain release factor 1 [Burkholderia mallei NCTC 10247]
gi|147746284|gb|EDK53362.1| peptide chain release factor 1 [Burkholderia mallei FMH]
gi|147751261|gb|EDK58329.1| peptide chain release factor 1 [Burkholderia mallei JHU]
gi|148024761|gb|EDK82944.1| peptide chain release factor 1 [Burkholderia mallei 2002721280]
gi|160696865|gb|EDP86835.1| peptide chain release factor 1 [Burkholderia mallei ATCC 10399]
gi|238520529|gb|EEP83988.1| peptide chain release factor 1 [Burkholderia mallei GB8 horse 4]
gi|243061104|gb|EES43290.1| peptide chain release factor 1 [Burkholderia mallei PRL-20]
Length = 360
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/295 (51%), Positives = 207/295 (70%), Gaps = 2/295 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +EL A D RL + L LLPKD DER+ +E+RAGTGG+E++L
Sbjct: 67 ELLADASMRDFAEDELRGARDRMGRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGNLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 247 THIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
IRTYNFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G +
Sbjct: 307 IRTYNFPQGRMTDHRINLTLYKLEQIMDG-DLDELIAALVSEHQAELLASLGDAE 360
>gi|392375295|ref|YP_003207128.1| peptide chain release factor 1 [Candidatus Methylomirabilis
oxyfera]
gi|258592988|emb|CBE69299.1| peptide chain release factor 1 [Candidatus Methylomirabilis
oxyfera]
Length = 358
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 161/344 (46%), Positives = 242/344 (70%), Gaps = 4/344 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
+ +R+ AIE+RS + + P A + + K +L + + R ++++
Sbjct: 4 LRERLDAIEQRSTEVLLQMGDPAIITDQARFQRLAKAHAELEPVVEAYQQYRKLLQDLEE 63
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K+L+++ +ED D+ ++A EL + ++L+ L LLP+D ADE+ ILEVRAG G
Sbjct: 64 TKALLHDGTED-DVRELAEAELKELAVKREKLEEELTLLLLPRDPADEKSIILEVRAGAG 122
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA ++ +MY RY++ +GWK E++ +++ + G KEA +I G G Y +LKFESG
Sbjct: 123 GDEAALFAAELVRMYGRYAELRGWKVEMLSSSQTGVGGVKEAILSIEGRGAYSRLKFESG 182
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE SGR+HTS V+VA+LP+A++V++++ +DLRID +RS G GGQ NTT+
Sbjct: 183 VHRVQRVPVTESSGRIHTSTVTVAVLPEAEDVEIQIDPKDLRIDVFRSTGPGGQSVNTTD 242
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTGM +S QDE+SQH N+AKA+KVL A+L E ++ S+ R +Q+G+G
Sbjct: 243 SAVRITHLPTGMVVSCQDEKSQHKNRAKAMKVLRARLLEAATAQQAAEISQARRQQVGTG 302
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
DRSERIRTYNFPQGRVTDHR+G+T H++ ++EGE ++ I AL
Sbjct: 303 DRSERIRTYNFPQGRVTDHRIGLTLHSLPRILEGE-IEELIGAL 345
>gi|269792432|ref|YP_003317336.1| peptide chain release factor 1 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100067|gb|ACZ19054.1| peptide chain release factor 1 [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 357
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 139/275 (50%), Positives = 206/275 (74%), Gaps = 1/275 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D++M +A EE+ D L+ L LLP+D D ++ I+E+RAG GG+EA+LFA
Sbjct: 70 DDEEMRQLAKEEVQRLSDMLPGLEQDLKVLLLPRDPNDHKNVIIEIRAGAGGDEAALFAA 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++++GW++E++ + E+ + GYKE + G G Y KLKFESG+HRVQR+P+
Sbjct: 130 DLFRMYTRYTERQGWRYEIMEMNETGIGGYKEVVFLVKGEGAYSKLKFESGVHRVQRIPV 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE SGR+HTS +VA+LP+A++VDV++R EDL+IDTYR+ G+GGQ+ N T+SAVR+THIP
Sbjct: 190 TEASGRIHTSTATVAVLPEAEDVDVQIRPEDLKIDTYRASGAGGQYVNMTDSAVRITHIP 249
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ ++ QDERSQ N+AKA+++L A+LY+ E + + R Q+G+GDRSERIRTY
Sbjct: 250 TGLVVTCQDERSQLKNRAKAMQLLRARLYDQELQKQQAQMAAERKGQVGTGDRSERIRTY 309
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
N+PQ R+TDHR+G T + + +++G +L I+AL
Sbjct: 310 NYPQNRLTDHRIGFTLYKLDQVLDG-DLYELIEAL 343
>gi|420419179|ref|ZP_14918269.1| peptide chain release factor 1 [Helicobacter pylori NQ4076]
gi|393031085|gb|EJB32157.1| peptide chain release factor 1 [Helicobacter pylori NQ4076]
Length = 352
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 223/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVINDIKRLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDSNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVTLNPGDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|386753588|ref|YP_006226806.1| peptide chain release factor 1 [Helicobacter pylori Shi112]
gi|384559846|gb|AFI00313.1| peptide chain release factor 1 [Helicobacter pylori Shi112]
Length = 352
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|210134282|ref|YP_002300721.1| peptide chain release factor 1 [Helicobacter pylori P12]
gi|238058714|sp|B6JPI0.1|RF1_HELP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|210132250|gb|ACJ07241.1| peptide chain release factor RF-1 [Helicobacter pylori P12]
Length = 352
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M +LD I+ L+
Sbjct: 322 LTLYSLEEIMLSGSLDEVINPLI 344
>gi|385855707|ref|YP_005902220.1| peptide chain release factor 1 [Neisseria meningitidis M01-240355]
gi|421568170|ref|ZP_16013897.1| peptide chain release factor 1 [Neisseria meningitidis NM3001]
gi|325204648|gb|ADZ00102.1| peptide chain release factor 1 [Neisseria meningitidis M01-240355]
gi|402342289|gb|EJU77457.1| peptide chain release factor 1 [Neisseria meningitidis NM3001]
Length = 358
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TNALIAEHQAELLAAMG 357
>gi|433537174|ref|ZP_20493674.1| peptide chain release factor 1 [Neisseria meningitidis 77221]
gi|432272370|gb|ELL27480.1| peptide chain release factor 1 [Neisseria meningitidis 77221]
Length = 358
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 229/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G+ +I +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDGDLAEI-TNALIAEHQAELLAAMG 357
>gi|167620578|ref|ZP_02389209.1| peptide chain release factor 1 [Burkholderia thailandensis Bt4]
Length = 360
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 150/291 (51%), Positives = 206/291 (70%), Gaps = 2/291 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +EL A + RL + L LLPKD DER+ +E+RAGTGG+E++LFA D
Sbjct: 71 DASMRDFAEDELRGARERMSRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRYAERQRWQVEMMSESASDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSERIRTY
Sbjct: 251 TGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSERIRTY 310
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
NFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G +
Sbjct: 311 NFPQGRMTDHRINLTLYKLEQIMDG-DLDELIAALVSEHQAELLASLGDAE 360
>gi|240950074|ref|ZP_04754376.1| peptide chain release factor 1 [Actinobacillus minor NM305]
gi|240295449|gb|EER46204.1| peptide chain release factor 1 [Actinobacillus minor NM305]
Length = 360
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 148/288 (51%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E ++L+ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIEENKAEIEQLEQNLQILLLPKDPNDEYNCFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY++ K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYAEGKRWRIEELSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKAL VL +++ ++E+ + ++ R +GSGDRS++IRT
Sbjct: 250 PTGIVVECQDERSQHKNKAKALAVLASRIVQVEKEKQAQEQADTRRNLLGSGDRSDKIRT 309
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YN+PQGRVTDHR+ +T + + ++M G+ +D I ++ + + D +A+
Sbjct: 310 YNYPQGRVTDHRINLTVYRLDEVMNGK-IDELIQPIITEYQADQLAAL 356
>gi|261209906|ref|ZP_05924207.1| peptide chain release factor 1 [Vibrio sp. RC341]
gi|260841092|gb|EEX67617.1| peptide chain release factor 1 [Vibrio sp. RC341]
Length = 362
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 209/289 (72%), Gaps = 2/289 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E S+ S R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
YN+PQGRV+DHR+ +T + ++++MEG ++ I+ ++ + + D +A+
Sbjct: 312 YNYPQGRVSDHRINLTVYRLTEVMEG-DMQSLIEPVIHEHQADQLAALA 359
>gi|392970038|ref|ZP_10335447.1| peptide chain release factor 1 [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046013|ref|ZP_10901488.1| peptide chain release factor 1 [Staphylococcus sp. OJ82]
gi|392511966|emb|CCI58654.1| peptide chain release factor 1 [Staphylococcus equorum subsp.
equorum Mu2]
gi|402764175|gb|EJX18262.1| peptide chain release factor 1 [Staphylococcus sp. OJ82]
Length = 358
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 236/351 (67%), Gaps = 5/351 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + P K +KE L+ ++ + + +++I ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVSDPDNLRKYSKEQSDLQKTVEVYRNYKQVKEDIVEIEEMLKE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++D D ++M EE ++ +L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TKDSDEIEMLKEEHQSLNNQVPKLEENLKFLLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A ++F+MY +Y++ + +K E+V ESD GYKE S +ISG G Y KLK+E+G HRVQRV
Sbjct: 127 AGNLFRMYSKYAEAQRYKTEIVEAAESDHGGYKEISFSISGSGAYSKLKYENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNED+++DTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEVRNEDIKVDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIR 369
+PTG+ I+ E+SQ N+ KA+KVL A+L++M+ + R +GSGDRSERIR
Sbjct: 247 VPTGI-IATSSEKSQIQNREKAMKVLKARLFDMKLQEEQQKYAAQRKSAVGSGDRSERIR 305
Query: 370 TYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
TYN+PQ RVTDHR+G+T + +MEG+ LD IDAL L ++ D + +
Sbjct: 306 TYNYPQSRVTDHRIGLTIQKLDQVMEGK-LDEVIDALTLAEQTDKLKELNN 355
>gi|152980137|ref|YP_001351903.1| peptide chain release factor 1 [Janthinobacterium sp. Marseille]
gi|166223564|sp|A6SUF6.1|RF1_JANMA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|151280214|gb|ABR88624.1| RF-1 peptide chain release factor [Janthinobacterium sp. Marseille]
Length = 360
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 157/328 (47%), Positives = 217/328 (66%), Gaps = 6/328 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K +E +L + L R +I + ++ D DM + A EE+ A +
Sbjct: 35 YRKMTREHAELGPLVALYGNYRQADSDIQDAQGML----SDPDMKEFAQEEIAAAKTRME 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L K LLPKD D+R+ LE+RAGTGG+EA+LFA D+ +MY R++++ W+ E+V
Sbjct: 91 QLEIDLQKMLLPKDPNDDRNIFLEIRAGTGGDEAALFAGDLLRMYSRFAERNRWQIEMVS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ S++ GYKE I G G Y KLKFESG HRVQRVP TE GR+HTSA +VAI+P+AD
Sbjct: 151 ESASEVGGYKEVIVRIIGFGAYSKLKFESGGHRVQRVPATETQGRIHTSACTVAIMPEAD 210
Query: 273 EV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
EV DV + DLRIDTYR+ G+GGQH N T+SAVR+THIPTG+ + QD+RSQH NKA A
Sbjct: 211 EVEDVNINPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LKVL A++ +++ + R IGSGDRSERIRTYNFPQGR+TDHR+ +T + +
Sbjct: 271 LKVLAARIKDVQLREQQSKEAATRKSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLD 330
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFG 419
+M+G +L +AL + + + +A+ G
Sbjct: 331 FIMDG-DLTELTNALAAEHQAELLAALG 357
>gi|319790214|ref|YP_004151847.1| peptide chain release factor 1 [Thermovibrio ammonificans HB-1]
gi|317114716|gb|ADU97206.1| peptide chain release factor 1 [Thermovibrio ammonificans HB-1]
Length = 365
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 140/265 (52%), Positives = 197/265 (74%), Gaps = 1/265 (0%)
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L K L+PKD DE++ ILE+RAG GGEEA+LFA D+F+MY RY+++KGWK E++ +
Sbjct: 95 LEGELKKLLIPKDPNDEKNVILEIRAGAGGEEAALFAQDLFRMYCRYAERKGWKVEILSM 154
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E+ L G KE A ISG G Y +LK+ESG+HRVQR+P+TE GR+HTS +VAILP+A+E
Sbjct: 155 NETGLGGIKEVVATISGKGAYSRLKYESGVHRVQRIPVTESGGRIHTSTATVAILPEAEE 214
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALK 333
V++ ++ DL+IDTYRS G+GGQH NTT+SAVR+TH+PTG+ ++ +ERSQ N+ KA+K
Sbjct: 215 VEIEIKESDLKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCSNERSQIQNRIKAMK 274
Query: 334 VLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDM 393
+L A+L E+ + R Q+GSGDRSE+IRTYNFP+GRVTDHR+ +T + + +
Sbjct: 275 ILRARLKELYERQQKEKMDSARKAQVGSGDRSEKIRTYNFPEGRVTDHRIKLTLYNLQEF 334
Query: 394 MEGENLDIFIDALLLQQEMDAIASF 418
++G +LD IDAL ++ I +
Sbjct: 335 LDG-DLDEMIDALAAAEQAKKIEAL 358
>gi|410659534|ref|YP_006911905.1| Peptide chain release factor 1 [Dehalobacter sp. DCA]
gi|410662513|ref|YP_006914884.1| Peptide chain release factor 1 [Dehalobacter sp. CF]
gi|409021889|gb|AFV03920.1| Peptide chain release factor 1 [Dehalobacter sp. DCA]
gi|409024869|gb|AFV06899.1| Peptide chain release factor 1 [Dehalobacter sp. CF]
Length = 355
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 156/345 (45%), Positives = 230/345 (66%), Gaps = 4/345 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ IE++ L L+ +PE A+ A++ K + L D + + E + ++I+
Sbjct: 1 MLNRLEEIEKKYDDLTELLAKPEIIANQADFQKYARSQSALTDIVAVFREYKEINRQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
LK ++ + D +M +MA E +K+L+ L LLPKD DE++ I+E+RAG G
Sbjct: 61 LKGML-DGERDPEMREMAEAEQDELTKSKKKLEGDLKILLLPKDPNDEKNVIMEIRAGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D++KMY +Y++ + WK E + + +D+ G+KE I G G Y +LK+ESG
Sbjct: 120 GDEAALFAGDLYKMYTKYAESQNWKTEPLSASFTDIGGFKEIIFMIEGQGAYSRLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS V+VA+LP+A+EVDV + D+RID + S G GGQ NTT
Sbjct: 180 VHRVQRIPATESGGRIHTSTVTVAVLPEAEEVDVAINPNDIRIDIFCSSGPGGQSVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+TH+PTG+ +S QDE+SQH NK KALKVL A+L E + ++ R Q+G+G
Sbjct: 240 SAVRITHLPTGIVVSCQDEKSQHKNKDKALKVLRARLLEKAQEEAAGEIAQERKSQVGTG 299
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
DRSERIRTYN+PQGRV+DHR+G+T H + ++ G +++ I AL+
Sbjct: 300 DRSERIRTYNYPQGRVSDHRIGLTLHKLDSILMG-DIEEIITALI 343
>gi|284007355|emb|CBA72733.1| peptide chain release factor 1 [Arsenophonus nasoniae]
Length = 349
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 220/323 (68%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L D R Q++I+ ++L++ D +M +MA EEL A + +
Sbjct: 28 SKEYAQLTDVTKCFQSWRAVQQDIETAETLLH----DPEMREMAQEELKEAKKRNEEFEQ 83
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DE++C LE+RAGTGG+EA++FA D+F+MY RY++ + W+ EV+ +E
Sbjct: 84 QLQILLLPKDPDDEKNCFLEIRAGTGGDEAAIFAGDLFRMYNRYAESRRWRIEVMNASEG 143
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG VYG+LKFESG HRVQRVP TE GR+HTSA +VAIL + ++
Sbjct: 144 EHGGYKEIIAKVSGDSVYGRLKFESGGHRVQRVPETESQGRIHTSACTVAILAEIPATEL 203
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKAL VL
Sbjct: 204 PDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNKAKALSVL 263
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + + + R +GSGDRS+RIRTYNFPQGR+TDHR+ +T + + +++E
Sbjct: 264 AARIRAAEVQKRREAEASERRNLLGSGDRSDRIRTYNFPQGRITDHRINLTLYRLDEVIE 323
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I ++ + + D +++
Sbjct: 324 GK-LDMLIQPIINEYQADQLSAL 345
>gi|134294603|ref|YP_001118338.1| peptide chain release factor 1 [Burkholderia vietnamiensis G4]
gi|166223537|sp|A4JB50.1|RF1_BURVG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|134137760|gb|ABO53503.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia
vietnamiensis G4]
Length = 360
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/292 (51%), Positives = 206/292 (70%), Gaps = 2/292 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A E + A + RL+ L K LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 67 ELLADASMRDFAEEAIRSARERMTRLEGELQKMLLPKDPNDDRNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 247 THIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G
Sbjct: 307 IRTYNFPQGRMTDHRINLTLYRLEALMDG-DLDELIGALVSEHQAELLASLG 357
>gi|238783270|ref|ZP_04627295.1| Peptide chain release factor 1 [Yersinia bercovieri ATCC 43970]
gi|238715863|gb|EEQ07850.1| Peptide chain release factor 1 [Yersinia bercovieri ATCC 43970]
Length = 360
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 222/323 (68%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q++I+ + ++ +D +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSAQEDIEAAEMML----DDLEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQLLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G +G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGEGAFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGLVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +G+GDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAEASERRNLLGTGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G LD+ I ++ + + D +++
Sbjct: 335 G-KLDMLIQPIVQEYQADQLSAL 356
>gi|374702493|ref|ZP_09709363.1| peptide chain release factor 1 [Pseudomonas sp. S9]
Length = 360
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 144/268 (53%), Positives = 198/268 (73%), Gaps = 2/268 (0%)
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L++ L + LLPKD D+R+ LEVRAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 KLEADLQRMLLPKDPNDDRNVFLEVRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A I G VY KLKFESG HRVQRVP TE GRVHTSA +VA+LP+ D
Sbjct: 153 ASEGEHGGYKEVIARIEGDNVYSKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPD 212
Query: 273 E-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
E ++ + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH N+AKA
Sbjct: 213 EQAEININPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQHKNRAKA 272
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ L AKL + + + H S R +GSGDRSERIRTYNFPQGRVTDHR+ +T ++++
Sbjct: 273 MAWLGAKLKDQQDAAAHKEISDTRKLLVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLA 332
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFG 419
++M G +D I+ LL + + D +A+ G
Sbjct: 333 EVMSG-GVDAVIEPLLAEYQADQLAALG 359
>gi|40062641|gb|AAR37562.1| peptide chain release factor 1 [uncultured marine bacterium 313]
Length = 358
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 146/296 (49%), Positives = 211/296 (71%)
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
L +I + DK+M+ + EL + +++ + +L LLPKD+AD ++ I+E+RAGTG
Sbjct: 61 LDKIIEDKKSDKEMIQLVKSELNELLKKKQSYEKILKVYLLPKDEADSKNAIVEIRAGTG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G EA+LF D++KMYE+ K W FE++ +++S+ G+KE I G +Y LKFESG
Sbjct: 121 GLEATLFVADLYKMYEKVCLNKKWSFEIINLSKSEAGGFKEVILLIKGANIYSFLKFESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +VA+LP+A+EVDV++ ++DLRID +RS G+GGQ NTT+
Sbjct: 181 VHRVQRVPETETQGRVHTSAATVAVLPEAEEVDVKIEDKDLRIDVFRSTGAGGQSVNTTD 240
Query: 303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSG 362
SAVR+THIPTG+ ++ QDE+SQH N+AK +K+L +++YE ER + RS+ R QIG+G
Sbjct: 241 SAVRITHIPTGIVVTNQDEKSQHKNRAKGMKILRSRIYESEREKKEKERSRDRKNQIGTG 300
Query: 363 DRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
DRSERIRTYNFPQGRVTDHR+ +T H + + + G+ + L +Q + +A+
Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTIHKLQEFLNGDAFEELGQNLRIQDQEIKLANL 356
>gi|317153066|ref|YP_004121114.1| peptide chain release factor 1 [Desulfovibrio aespoeensis Aspo-2]
gi|316943317|gb|ADU62368.1| peptide chain release factor 1 [Desulfovibrio aespoeensis Aspo-2]
Length = 355
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 158/327 (48%), Positives = 218/327 (66%), Gaps = 3/327 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K +K L D + L E + K++ + + ++ D ++ +MA E+ D +
Sbjct: 31 YKKVSKAHSDLSDVVVLYREYKKCSKDLAENREMSHDP--DPEIREMAKAEISELEDRIE 88
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLP D DE++ ILE+RAGTGG+EA LFA D+++MY RY++ WK E +
Sbjct: 89 TLEEKIKILLLPSDPMDEKNIILEIRAGTGGDEAGLFAADLYRMYTRYAEANRWKVEEMS 148
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ G KE A+I+G VY KLK+ESG HRVQRVP TE GR+HTS V+VAI+P+A+
Sbjct: 149 SNVTGSGGLKEVIASIAGDKVYSKLKYESGTHRVQRVPATESQGRIHTSVVTVAIMPEAE 208
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVD+ LR ED+R+D +RS G GGQ NTT+SA+RVTHIPTGM + QDE+SQH NKAKAL
Sbjct: 209 EVDIDLRPEDVRVDVFRSSGPGGQSVNTTDSAIRVTHIPTGMIVICQDEKSQHKNKAKAL 268
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
KVL ++L ++E+ + R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T H +
Sbjct: 269 KVLRSRLLQLEQDKAKAEEDAARRIQVGSGDRSERIRTYNFPQGRVSDHRINLTLHKLPQ 328
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFG 419
++EGE LD DAL+ + +A+ G
Sbjct: 329 ILEGE-LDDLTDALIGHYQAEAMKRQG 354
>gi|238797830|ref|ZP_04641323.1| Peptide chain release factor 1 [Yersinia mollaretii ATCC 43969]
gi|238718358|gb|EEQ10181.1| Peptide chain release factor 1 [Yersinia mollaretii ATCC 43969]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 223/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D + E R+ Q +I+ + ++ +D +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTNCFKEWRSTQDDIEAAEMML----DDLEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQLLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G +G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGEGAFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH NKAKA+ VL
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGLVVECQDERSQHKNKAKAMSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A++ E + L+ + R +G+GDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIRAAEMQKRQLAEASERRNLLGTGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I ++ + + D +++
Sbjct: 335 GK-LDMLIQPIVQEYQADQLSAL 356
>gi|429085189|ref|ZP_19148168.1| Peptide chain release factor 1 [Cronobacter condimenti 1330]
gi|426545653|emb|CCJ74209.1| Peptide chain release factor 1 [Cronobacter condimenti 1330]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 224/323 (69%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R Q++++ + ++ D +M DMA +EL A ++ + L+
Sbjct: 39 SREYAQLSDVSRCFLEWRQVQEDMETARLML----SDPEMRDMAQDELLEAKEKSEALEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E
Sbjct: 95 QLQLLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGAYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALAVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GARIHAAEAAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD I+ ++ + + D +A+
Sbjct: 335 GK-LDALIEPIIQEHQADQLAAL 356
>gi|237799727|ref|ZP_04588188.1| peptide chain release factor 1 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022582|gb|EGI02639.1| peptide chain release factor 1 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 223/324 (68%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + L +L Q +++G ++L+ + D DM DMA EE+ + L++
Sbjct: 39 SREYAEVEPVVALYKQLIKVQADLEGAQALLKDS--DPDMRDMAVEEVRETKQQLVDLEA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E
Sbjct: 97 QLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH N+A+A+ L
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
AKL + + S + + R +GSGDRSERIRTYNFPQGRVTDHRV +T +++ +++
Sbjct: 277 SAKLNDQQTSAAANAIASERKLLVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLA 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +D I+ LL + + D +A+ G
Sbjct: 337 G-GVDAVIEPLLAEYQADQLAALG 359
>gi|260881387|ref|ZP_05404264.2| peptide chain release factor 1 [Mitsuokella multacida DSM 20544]
gi|260849258|gb|EEX69265.1| peptide chain release factor 1 [Mitsuokella multacida DSM 20544]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 237/351 (67%), Gaps = 10/351 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+K + +++ A+E + LE+L++ PE A A++ KE L +I++ R ++
Sbjct: 1 MKSVLEKLQAVEDKYRELESLISDPETMADMAKWQAYTKEHAAL---TPIITKFRRYKEV 57
Query: 120 IDGL---KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+ G+ KS++ E D +M EL +++++ L L LLPKD DE++ I+E
Sbjct: 58 LKGIEEAKSMLGEAL-DHEMHAFVESELADLMEQKEALDKELPILLLPKDPNDEKNVIVE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+R G GGEEA+LFA D+F+MY RY++KKGWK E++ +++ G+KE + ++G G Y
Sbjct: 117 IRGGVGGEEAALFAGDLFRMYSRYAEKKGWKVELMDANATEIGGFKEVTFMVTGYGAYSY 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LK+ESG HRVQRVP+TE GR+HTSA +VA+LP+A++VDV + DLRIDTY + G+GGQ
Sbjct: 177 LKYESGTHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDVAINPADLRIDTYCASGAGGQ 236
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
+ N T +A+R+TH+PTG+ + QDE+SQ NK KA+KVL A++ + R + + R
Sbjct: 237 YVNRTETAIRITHLPTGIVVQCQDEKSQLKNKEKAMKVLRARILDKARQEQEAAVAADRR 296
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
Q+GSGDRSERIRTYNFPQGRVTDHR+G+T H I +++G +LD + AL+
Sbjct: 297 SQVGSGDRSERIRTYNFPQGRVTDHRIGLTLHKIDAILDG-DLDELLAALI 346
>gi|407794321|ref|ZP_11141348.1| protein chain release factor A [Idiomarina xiamenensis 10-D-4]
gi|407212921|gb|EKE82782.1| protein chain release factor A [Idiomarina xiamenensis 10-D-4]
Length = 362
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 146/324 (45%), Positives = 222/324 (68%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + S + Q+++ ++ E +D +M MA +EL A ++++L
Sbjct: 39 SKEYSQLEEIAAEFSRYQQAQEDVQTAAEMLQE--DDAEMRAMAEDELSQAKQQQEQLTQ 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLP+D D+R C +E+RAG GG+EA++FA D+F+MY RY++++GWK +V ++
Sbjct: 97 SLQVLLLPRDPNDDRSCYVEIRAGAGGDEAAIFAGDLFRMYSRYAEQRGWKVSMVSASDG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A +SG G YG++KFESG HRVQRVP TE GR+HTSA +VA+LP+ E +
Sbjct: 157 EHGGYKEVIAHVSGEGCYGRMKFESGGHRVQRVPETESQGRIHTSACTVAVLPEIPEAEA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ + DLR+DTYR+ G+GGQH N T+SA+R+THIPTG+ + QDERSQH N+AKA+ VL
Sbjct: 217 IEINPADLRVDTYRASGAGGQHVNRTDSAIRLTHIPTGVVVECQDERSQHKNRAKAMSVL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+L ++E + + R +GSGDRSERIRTYN+PQ RVTDHR+ +T + + +++
Sbjct: 277 QARLQKLEDDKRQQEEASTRRNLVGSGDRSERIRTYNYPQSRVTDHRINLTLYRLDEVLA 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +LD+ +DA++ + + D +A+
Sbjct: 337 G-SLDLLLDAIVQEHQADQLAALA 359
>gi|384888733|ref|YP_005763035.1| peptide chain release factor 1 [Helicobacter pylori v225d]
gi|297379299|gb|ADI34186.1| peptide chain release factor 1 [Helicobacter pylori v225d]
Length = 352
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|241760302|ref|ZP_04758397.1| peptide chain release factor 1 [Neisseria flavescens SK114]
gi|241319180|gb|EER55658.1| peptide chain release factor 1 [Neisseria flavescens SK114]
Length = 358
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 159/342 (46%), Positives = 228/342 (66%), Gaps = 8/342 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E ++ + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAEITPVVETFHQYMQAQNDMAEAQEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATENQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QD RSQH NKA+A+KVL A+L + ++ + R IGSGDRSERIRTYN+PQGR
Sbjct: 257 CQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
VTDHR+ +T H + +M+G +L+ +AL+ + + + +A+ G
Sbjct: 317 VTDHRINLTLHKLDFVMDG-DLEEITNALIAEHQAELLAAMG 357
>gi|387126387|ref|YP_006294992.1| peptide chain release factor 1 [Methylophaga sp. JAM1]
gi|386273449|gb|AFI83347.1| Peptide chain release factor 1 [Methylophaga sp. JAM1]
Length = 362
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 146/285 (51%), Positives = 209/285 (73%), Gaps = 2/285 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M +MA EEL +A +++++L L K LLPKD D+R+ LEVRAGTGG+EA++F+ D
Sbjct: 73 DPEMREMAKEELAIAEEKQEQLAIDLQKLLLPKDPNDQRNIFLEVRAGTGGDEAAIFSGD 132
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++ + W+ EV+ E + GYKE A I G G Y +LKFESG HRVQRVP T
Sbjct: 133 LFRMYTRYAESRRWQVEVLNAQEGEHGGYKEIIARIVGDGAYSRLKFESGAHRVQRVPET 192
Query: 253 EKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VAILP+ADE+D + + D+++DT+RS G+GGQH NTT+SAVR+THIP
Sbjct: 193 ESQGRIHTSACTVAILPEADEIDQIEINPADIKMDTFRSSGAGGQHVNTTDSAVRITHIP 252
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + Q+ERSQH N+AKA+ VL +++ + + +++ R +GSGDRSERIRTY
Sbjct: 253 TGIIVECQEERSQHKNRAKAMSVLQSRIMAAKEEKQASEQAETRRLLVGSGDRSERIRTY 312
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
N+PQGR+TDHR+ +T + + ++M G+ LD ID L+ + + D +A
Sbjct: 313 NYPQGRITDHRINLTLYKLDEVMSGQ-LDQVIDPLISEYQADQLA 356
>gi|406661878|ref|ZP_11069988.1| Peptide chain release factor 1 [Cecembia lonarensis LW9]
gi|405554236|gb|EKB49346.1| Peptide chain release factor 1 [Cecembia lonarensis LW9]
Length = 359
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 165/361 (45%), Positives = 236/361 (65%), Gaps = 12/361 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ A++ R L L+ QPEA ++Y+K KE + L + L + + +
Sbjct: 1 MLEKLQALKDRFIELGQLIIQPEAMSDMSKYTKLTKEYKDLEKIVALYDSYKLVVENLAS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKR----LQSLLLKSLLPKDDADERDCILEVR 178
K L+ E +D D +MA EL +E KR L+ L + L+PKD D +DCILE+R
Sbjct: 61 TKELL-EKEKDPDFREMAKMEL----EELKRKHEILEEELKQQLIPKDPNDSKDCILEIR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA++FA D+F+MY+R+ +K+ WK V+ +T GYKE + +SG VYG LK
Sbjct: 116 AGTGGDEAAIFAGDLFRMYQRFCEKQNWKITVLDLTFGSSGGYKEIISTVSGADVYGMLK 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
+ESG+HRVQRVP TE GRVHTSA +VA+LP+ DEV+V + D+R DTY S G GGQ
Sbjct: 176 YESGVHRVQRVPATETQGRVHTSAATVAVLPEMDEVEVDINMNDIRKDTYCSSGPGGQSV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT SAVR+TH PTG+ ++ QDE+SQ N KALKVL ++LYE+E ++ + + R
Sbjct: 236 NTTYSAVRLTHNPTGLVVTCQDEKSQIKNFEKALKVLRSRLYEIELAKHNEAVGAQRKSM 295
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+ SGDRS++IRTYN+PQ RVTDHR+ T + + D+MEG N++ FI AL + ++ + +
Sbjct: 296 VASGDRSDKIRTYNYPQSRVTDHRINKTVYNLPDVMEG-NIEDFISALRFAENVEKMKAT 354
Query: 419 G 419
G
Sbjct: 355 G 355
>gi|420474957|ref|ZP_14973628.1| peptide chain release factor 1 [Helicobacter pylori Hp H-21]
gi|393093064|gb|EJB93681.1| peptide chain release factor 1 [Helicobacter pylori Hp H-21]
Length = 352
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/323 (47%), Positives = 224/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SRAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M NLD I+ L+
Sbjct: 322 LTLYSLEEIMLSGNLDEVINPLI 344
>gi|422654390|ref|ZP_16717133.1| peptide chain release factor 1 [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330967416|gb|EGH67676.1| peptide chain release factor 1 [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 224/324 (69%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + L ++L Q +++G ++L+ + D DM +MA EE+ + L++
Sbjct: 39 SREYAEVEPVVALYTQLARVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLVELEA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E
Sbjct: 97 QLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGESVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH N+A+A+ L
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
AKL + + S + + R +GSGDRSERIRTYNFPQGRVTDHRV +T +++ +++
Sbjct: 277 SAKLNDQQTSAAANAIASERKLLVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLA 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +D I+ LL + + D +A+ G
Sbjct: 337 G-GVDAVIEPLLAEYQADQLAALG 359
>gi|237731780|ref|ZP_04562261.1| peptide chain release factor 1 [Citrobacter sp. 30_2]
gi|395229702|ref|ZP_10408013.1| peptide chain release factor 1 [Citrobacter sp. A1]
gi|421847446|ref|ZP_16280584.1| peptide chain release factor 1 [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424729808|ref|ZP_18158408.1| glutamyl-trna reductase [Citrobacter sp. L17]
gi|226907319|gb|EEH93237.1| peptide chain release factor 1 [Citrobacter sp. 30_2]
gi|394716917|gb|EJF22647.1| peptide chain release factor 1 [Citrobacter sp. A1]
gi|411771242|gb|EKS54949.1| peptide chain release factor 1 [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422895763|gb|EKU35550.1| glutamyl-trna reductase [Citrobacter sp. L17]
gi|455645768|gb|EMF24811.1| peptide chain release factor 1 [Citrobacter freundii GTC 09479]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 152/327 (46%), Positives = 228/327 (69%), Gaps = 6/327 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA +EL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKCE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQHLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ASEGEHGGFKEVIAKISGEGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDVR-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+ ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKA
Sbjct: 211 DAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKA 270
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ VL A++ E +R + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + +
Sbjct: 271 MSVLGARIRAAEVARRQQAEASERRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLD 330
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASF 418
+ MEG+ LD+ I+ ++ + + D +A+
Sbjct: 331 EAMEGK-LDMLIEPIVQEYQADQLAAL 356
>gi|89073091|ref|ZP_01159630.1| peptide chain release factor 1 [Photobacterium sp. SKA34]
gi|89051044|gb|EAR56501.1| peptide chain release factor 1 [Photobacterium sp. SKA34]
Length = 362
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 206/288 (71%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA EE+ A E +RL L L+PKD D+R+C +E+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQEEIKEAKAEIERLADELQVLLIPKDPNDDRNCFVEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++++GW+ E++ S+ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSKYAERRGWRIEIINENRSEQGGYKEMIAKVNGDGAYGILKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VA+LP+ E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAVLPEIPEAEIPEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A++ + E + + + R +GSGDRS+RIRT
Sbjct: 252 PTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRNAEEASTRRNLLGSGDRSDRIRT 311
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YN+PQGRV+DHR+ +T + ++++MEG +LD I + + + D +A+
Sbjct: 312 YNYPQGRVSDHRITLTLYRLNEVMEG-DLDALIQPVFTEYQADQLAAM 358
>gi|420495159|ref|ZP_14993724.1| peptide chain release factor 1 [Helicobacter pylori Hp P-23]
gi|393113292|gb|EJC13811.1| peptide chain release factor 1 [Helicobacter pylori Hp P-23]
Length = 352
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|386747730|ref|YP_006220938.1| peptide chain release factor 1 [Helicobacter cetorum MIT 99-5656]
gi|384553972|gb|AFI05728.1| peptide chain release factor 1 [Helicobacter cetorum MIT 99-5656]
Length = 352
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKVLEVKKGELETSIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K W+ E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWRVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DLRI+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLRIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSER+
Sbjct: 246 HIPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERV 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|257457982|ref|ZP_05623141.1| peptide chain release factor 1 [Treponema vincentii ATCC 35580]
gi|257444695|gb|EEV19779.1| peptide chain release factor 1 [Treponema vincentii ATCC 35580]
Length = 355
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 150/316 (47%), Positives = 227/316 (71%), Gaps = 2/316 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +A +E L M ++ ++EI ++++ E + D ++ +MA EEL + +
Sbjct: 31 YKEAMREHAYLSKLMEEYAQYLRFEQEIIQTRAMMQEET-DHELKEMAREELHNLEAQLE 89
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ ++ L L+P D +E++ I+E+R GTGGEEA+LFA D+ KMY Y++ K WK+E++
Sbjct: 90 QSENNLKVLLIPPDPLEEKNIIMEIRGGTGGEEAALFAADLLKMYTHYAELKNWKYEILS 149
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E++L G+KE + +ISG VYG L++ESG+HRVQRVP TE SGR+HTSAV+VA+LP+A+
Sbjct: 150 SNETELGGFKEVTLSISGKYVYGSLRYESGVHRVQRVPETEGSGRIHTSAVTVAVLPEAE 209
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
E ++ ++ EDLRID R+GG GGQ NTT+SAVR+THIPTG+ + QDE+SQ NKAKA+
Sbjct: 210 ETEIVIKQEDLRIDVMRAGGPGGQCVNTTDSAVRITHIPTGLVVICQDEKSQIKNKAKAM 269
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
+VL ++LY+ME ++ R++ R Q+GSGDRSERIRTYN+PQ RVTDHR+ +T + +
Sbjct: 270 RVLRSRLYDMEEAKKQSERAEDRKNQVGSGDRSERIRTYNYPQNRVTDHRINLTLYKLDT 329
Query: 393 MMEGENLDIFIDALLL 408
+M+G +L+ ++AL +
Sbjct: 330 IMQG-DLNEIVEALCI 344
>gi|167993219|ref|ZP_02574314.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205328702|gb|EDZ15466.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 228/323 (70%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q +I+ + ++ +D +M +MA EEL A ++ ++L+
Sbjct: 39 SREYAQLSDVSRCFTDWQQVQDDIETAQMML----DDPEMREMAQEELREAKEKSEQLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ ++E
Sbjct: 95 QLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIHAAETAKCQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEHQADLLAAL 356
>gi|420464766|ref|ZP_14963533.1| peptide chain release factor 1 [Helicobacter pylori Hp H-6]
gi|393082253|gb|EJB82969.1| peptide chain release factor 1 [Helicobacter pylori Hp H-6]
Length = 352
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|384896816|ref|YP_005772244.1| peptide chain release factor 1 [Helicobacter pylori Lithuania75]
gi|317011921|gb|ADU82529.1| peptide chain release factor 1 [Helicobacter pylori Lithuania75]
Length = 352
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERIRTYN+PQ R+++HR+
Sbjct: 262 HKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHRIN 321
Query: 385 ITHHAISDMMEGENLDIFIDALL 407
+T +++ ++M +LD I+ L+
Sbjct: 322 LTLYSLEEIMLSGSLDEVINPLI 344
>gi|444374452|ref|ZP_21173758.1| peptide chain release factor 1 [Helicobacter pylori A45]
gi|443621107|gb|ELT81547.1| peptide chain release factor 1 [Helicobacter pylori A45]
Length = 352
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 141/279 (50%), Positives = 207/279 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
H+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ+GSGDRSERI
Sbjct: 246 HLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERI 305
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
RTYN+PQ R+++HR+ +T +++ ++M NLD ++ L+
Sbjct: 306 RTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVVNPLI 344
>gi|218960517|ref|YP_001740292.1| peptide chain release factor RF-1 [Candidatus Cloacamonas
acidaminovorans]
gi|167729174|emb|CAO80085.1| peptide chain release factor RF-1 [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 355
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 155/318 (48%), Positives = 218/318 (68%), Gaps = 19/318 (5%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
KELR++ + L+ +E++ L+ + D +MLD+ DEE+ LQ
Sbjct: 41 KELREINAAWKHYQTLKKHIEEVNALE----KTENDPEMLDLIK-------DEERSLQQQ 89
Query: 158 L------LKSLL-PKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L LK LL P D D ++ I+E+RAGTGGEEA+LFA D+F+MY Y++ KGWK EV
Sbjct: 90 LEQTELKLKDLLIPADPNDAKNAIVEIRAGTGGEEAALFAADLFRMYSYYAEMKGWKLEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ + +++L GYKE +SG VY ++FESG+HRVQR+P+TE SGR+HTSAV+VA+LP+
Sbjct: 150 ISMNQTELGGYKEIIFQLSGKDVYSYMRFESGVHRVQRIPVTESSGRIHTSAVTVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAK 330
A+++D+ ++ DLRID YRS G GGQ NTT+SAVR+TH+PTG+ ++ QDE+SQ NKAK
Sbjct: 210 AEDIDIDIQESDLRIDVYRSTGHGGQSVNTTDSAVRITHLPTGIVVTCQDEKSQIKNKAK 269
Query: 331 ALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI 390
ALKVL ++L + E SR +K R Q+ +GDRS +IRTYNFPQ RVTDHR+ +T + +
Sbjct: 270 ALKVLRSRLLDEEISRQEQEIAKARKAQVSTGDRSAKIRTYNFPQSRVTDHRINLTSYNL 329
Query: 391 SDMMEGENLDIFIDALLL 408
+ G N++ FI AL L
Sbjct: 330 DSFLAG-NIEEFIQALRL 346
>gi|193222210|emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiimonas
arsenicoxydans]
Length = 361
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 150/288 (52%), Positives = 203/288 (70%), Gaps = 2/288 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D DM + A EE+ A ++L+ L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 72 DPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGD 131
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY R++++ W+ E+V + S++ GYKE I G G Y KLKFESG HRVQRVP T
Sbjct: 132 LLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHRVQRVPAT 191
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+THIP
Sbjct: 192 ETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAVRITHIP 251
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + QD+RSQH NKA ALKVL A++ +++ + R IGSGDRSERIRTY
Sbjct: 252 TGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKSLIGSGDRSERIRTY 311
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
NFPQGR+TDHR+ +T + + +M+G+ L +AL + + D +A+ G
Sbjct: 312 NFPQGRMTDHRINLTLYKLDFIMDGD-LTELTNALAAEHQADLLAALG 358
>gi|401679720|ref|ZP_10811644.1| peptide chain release factor 1 [Veillonella sp. ACP1]
gi|400218847|gb|EJO49718.1| peptide chain release factor 1 [Veillonella sp. ACP1]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 151/349 (43%), Positives = 233/349 (66%), Gaps = 10/349 (2%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQ 117
D ++++E + + +E+R ++ PE A E+ K ++ +L +++ E +
Sbjct: 4 DKLQVIEDKFMDLEQR-------ISDPEVIARQDEWRKLTRQHAQLSETVEAFREYKKVL 56
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
ID +I + S D++ +MA EEL +++ L+ L LLPKD D+++ I+E+
Sbjct: 57 AGIDEAMEVIEDKSMDEEFREMAQEELKELKPQKEELEEKLQILLLPKDPNDDKNIIIEI 116
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
R G GG+EA+LFA D+F+MY +Y++ +GW+ E++ E +L G+KE ++ G VY K+
Sbjct: 117 RGGAGGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVVFSVDGENVYSKM 176
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTS V+VA+LP+ ++VD+ + ++DL+IDTYR+ G+GGQH
Sbjct: 177 KFESGVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEINDKDLKIDTYRASGAGGQH 236
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
N T SAVR+TH+PTG+ ++ QD+RSQ N+ KA++VL AKL + S + R
Sbjct: 237 INKTESAVRITHLPTGIVVACQDQRSQLQNREKAMRVLRAKLQDKAEQEATASMAADRKS 296
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
Q+G+GDRSERIRTYN+PQGRVTDHR+ +T + + ++ G +LD I AL
Sbjct: 297 QVGTGDRSERIRTYNYPQGRVTDHRINLTLYKLDAILNG-DLDEIIQAL 344
>gi|254253376|ref|ZP_04946694.1| Peptide chain release factor 1 [Burkholderia dolosa AUO158]
gi|124895985|gb|EAY69865.1| Peptide chain release factor 1 [Burkholderia dolosa AUO158]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 151/292 (51%), Positives = 207/292 (70%), Gaps = 2/292 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +E+ A D RL+ L K LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 67 ELLADPSMRDFAEDEIRSARDRMARLELELQKMLLPKDPNDDRNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY R+++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRFAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSER
Sbjct: 247 THIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSER 306
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G
Sbjct: 307 IRTYNFPQGRMTDHRINLTLYRLEAIMDG-DLDELIGALVSEHQAELLASLG 357
>gi|425738331|ref|ZP_18856596.1| peptide chain release factor 1 [Staphylococcus massiliensis S46]
gi|425480004|gb|EKU47174.1| peptide chain release factor 1 [Staphylococcus massiliensis S46]
Length = 359
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 235/356 (66%), Gaps = 10/356 (2%)
Query: 72 IERRSACLENLVNQPEASPAE-----YSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E R L L++ P+ YSK +L+K ++ + + +++I ++ +
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRAYSKEQADLQK---TVEVYRHYKQVKEDISEIEIM 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E ++DKD +DM EEL + +L+ L L+PKD D+++ I+E+RA GG+EA
Sbjct: 65 LGE-TKDKDEVDMLKEELSDLKPQVPQLEEELKFLLIPKDPNDDKNVIMEIRAAAGGDEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+F+MY RYS+ G+K +VV + SD GYKE S I G G Y KLK+E+G HRV
Sbjct: 124 AIFAGDLFRMYTRYSESIGYKTDVVEMNASDHGGYKEISFMIQGQGAYSKLKYENGAHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+A++V+V +RNED++IDTYRS G+GGQH NTT+SAVR
Sbjct: 184 QRVPETESGGRIHTSTSTVAVLPEAEDVEVEIRNEDIKIDTYRSSGAGGQHVNTTDSAVR 243
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG ++ QDE+SQ N+ KA+ VL A++++M+ + R +G+GDRSE
Sbjct: 244 ITHLPTGTVVTSQDEKSQIKNREKAMNVLKARVHDMKVKEEEAKYASERKSAVGTGDRSE 303
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
RIRTYN+PQ RVTDHR+G+T + +MEG+ LD IDAL + ++ + + Q
Sbjct: 304 RIRTYNYPQSRVTDHRIGLTIQKLDQIMEGK-LDEIIDALTMHEQTEKLKELNDGQ 358
>gi|424030757|ref|ZP_17770230.1| peptide chain release factor 1 [Vibrio cholerae HENC-01]
gi|424042632|ref|ZP_17780325.1| peptide chain release factor 1 [Vibrio cholerae HENC-02]
gi|408881038|gb|EKM19949.1| peptide chain release factor 1 [Vibrio cholerae HENC-01]
gi|408887922|gb|EKM26411.1| peptide chain release factor 1 [Vibrio cholerae HENC-02]
Length = 362
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 230/344 (66%), Gaps = 6/344 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLVAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKETIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQ 375
+ QDERSQH NKAKA+ VL A++ + E R S R +GSGDRS+RIRTYN+PQ
Sbjct: 257 VECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQ 316
Query: 376 GRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
GRV+DHR+ +T + ++++MEG +L ID ++ + + D +A+
Sbjct: 317 GRVSDHRINLTIYRLNEVMEG-DLQSLIDPVVQEHQADQLAALA 359
>gi|422587436|ref|ZP_16662107.1| peptide chain release factor 1 [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330873307|gb|EGH07456.1| peptide chain release factor 1 [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 360
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 224/324 (69%), Gaps = 4/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + L ++L Q +++G ++L+ + D DM +MA EE+ + L++
Sbjct: 39 SREYAEVEPVVALYTQLARVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLVELEA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E
Sbjct: 97 QLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH N+A+A+ L
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWL 276
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
AKL + + S + + R +GSGDRSERIRTYNFPQGRVTDHRV +T +++ +++
Sbjct: 277 SAKLNDQQTSAAANAIASERKLLVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLA 336
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G +D I+ LL + + D +A+ G
Sbjct: 337 G-GVDAVIEPLLAEYQADQLAALG 359
>gi|126665163|ref|ZP_01736146.1| peptide chain release factor 1 [Marinobacter sp. ELB17]
gi|126630533|gb|EBA01148.1| peptide chain release factor 1 [Marinobacter sp. ELB17]
Length = 364
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 143/302 (47%), Positives = 213/302 (70%), Gaps = 2/302 (0%)
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+I+ + L + D DM +MA EEL A + L + L +LPKD D ++ LEVR
Sbjct: 61 DINEARELSKDGDADADMREMAEEELHTAQQASEELDAELQGLMLPKDPNDGKNVFLEVR 120
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA++FA D+F+MY R+++++ W+ E++ +E + GYKE A ++G GVYG LK
Sbjct: 121 AGTGGDEAAIFAGDLFRMYSRFAERRRWQVEILSASEGEHGGYKEVIARVAGSGVYGTLK 180
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQH 297
FESG+HRVQRVP TE GR+HTSA +VA++P+ADE + V + DLR+DT+R+ G+GGQH
Sbjct: 181 FESGVHRVQRVPETESQGRIHTSACTVAVMPEADEAEAVEINKGDLRVDTFRASGAGGQH 240
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
N T+SA+R+TH+P+G+ + Q+ERSQH N+AKA+ +L ++L +E R H S ++ R
Sbjct: 241 VNKTDSAIRITHLPSGLVVECQEERSQHKNRAKAMSLLASRLQNIETERAHQSMAETRKS 300
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
+GSGDRSERIRTYNFPQ RVTDHR+ +T + + +++ G +LD + LL + + + +A+
Sbjct: 301 LVGSGDRSERIRTYNFPQSRVTDHRINLTLYKLDEVIAG-DLDSVVKPLLQEHQAELLAA 359
Query: 418 FG 419
Sbjct: 360 LA 361
>gi|85860527|ref|YP_462729.1| peptide chain release factor 1 [Syntrophus aciditrophicus SB]
gi|119361624|sp|Q2LWU9.1|RF1_SYNAS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|85723618|gb|ABC78561.1| bacterial peptide chain release factor 1 (rf-1) [Syntrophus
aciditrophicus SB]
Length = 357
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 165/345 (47%), Positives = 231/345 (66%), Gaps = 6/345 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E R LE L++ P + Y K KE LRD + + + I+
Sbjct: 1 MFSKLKEVESRYLELEKLLSDPTVVTRQSLYQKYAKEHADLRDLVEVFRKYEKVGAAIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ +D+++ ++A EEL L+ L LLP+D D+R+ LE+RAGTG
Sbjct: 61 AQQLLR--GDDEELKEIAREELPELRQHLAGLEERLKVLLLPRDLNDDRNVFLEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD-LRGYKEASAAISGVGVYGKLKFES 241
G+EA LF D+F+MY RY++ + WK EV+ T S + G+KE A+I+G G Y +LK+ES
Sbjct: 119 GDEAGLFVGDLFRMYARYAEMRRWKVEVISSTPSSGVGGFKEIIASIAGQGAYSQLKYES 178
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSAV+VAI+P+ADEV+V + DLRID + S G GGQ NTT
Sbjct: 179 GVHRVQRVPVTEAQGRIHTSAVTVAIMPEADEVEVTIDPNDLRIDVFHSSGHGGQSVNTT 238
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+TH+PTG+ +S QDE+SQ NKAKALKVL A+L ++ + S+ R Q+GS
Sbjct: 239 DSAVRITHLPTGLVVSCQDEKSQLKNKAKALKVLRARLLDIMVKKQSDEISEARKSQVGS 298
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 406
GDRSERIRTYNFPQGRVTDHRVG+T +++ +++ G ++ FIDAL
Sbjct: 299 GDRSERIRTYNFPQGRVTDHRVGLTLYSLENIL-GGDIQEFIDAL 342
>gi|406838187|ref|ZP_11097781.1| peptide chain release factor 1 [Lactobacillus vini DSM 20605]
Length = 360
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 238/352 (67%), Gaps = 8/352 (2%)
Query: 59 NDLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTK 116
NDL K R+ +E R L L++ PE A +++K +KE+ LR+++ E +
Sbjct: 2 NDLFK----RLQTLEDRYEELGELLSDPEVIADTPKFTKLSKEMADLRETVEKYREYKKV 57
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+ I + ++ E +D +M M +EL A ++ RL+ + LLPKD DE++ I+E
Sbjct: 58 SQTIADDQEMLNEKLDD-EMAAMVKDELNTAKEKRVRLEEKIKLLLLPKDPNDEKNIIME 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+R GG+EASLFA D+F MY +Y++K+GWK +VV +++ G+KE + I+G VY K
Sbjct: 117 IRGAAGGDEASLFAADLFNMYSKYAEKQGWKIQVVDKNVTEVGGFKEIALVINGKSVYSK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LK+ESG HRVQRVP+TE +GRVHTS +V ++P+ ++V++ L +D+R+D +RS G+GGQ
Sbjct: 177 LKYESGAHRVQRVPVTESAGRVHTSTATVVVMPEEEDVEIELDPKDIRVDVFRSSGAGGQ 236
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H N T+SAVR+TH+PTG+ +S+QD+RSQ N+ KA+++L A++Y+ SR + R
Sbjct: 237 HINKTSSAVRMTHLPTGIVVSMQDQRSQQQNREKAMQILKARVYDYYASREQKEYDQNRK 296
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 408
+G+GDRSERIRTYN+PQ RVTDHR+G+T + + +M GE L+ IDAL+L
Sbjct: 297 SAVGTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGE-LEEVIDALIL 347
>gi|256821856|ref|YP_003145819.1| peptide chain release factor 1 [Kangiella koreensis DSM 16069]
gi|256795395|gb|ACV26051.1| peptide chain release factor 1 [Kangiella koreensis DSM 16069]
Length = 364
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 211/288 (73%), Gaps = 2/288 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
ED DM +MA EEL A + + L+ + K LLP+D D+++ LE+RAGTGG+EA++FA
Sbjct: 73 EDPDMREMAQEELKDAKGQIELLEVEMQKLLLPRDPNDDKNTFLEIRAGTGGDEAAIFAG 132
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++KK W+ EV+ ++ + GYKE ISG VY LKFESG HRVQRVP
Sbjct: 133 DLFRMYSKYAEKKRWQVEVISQSDGEHGGYKEIIVRISGDSVYSHLKFESGAHRVQRVPE 192
Query: 252 TEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ADE+D + + DL+IDT+R+ G+GGQH N T+SA+R+TH+
Sbjct: 193 TESQGRIHTSACTVAVMPEADELDAIEINPADLKIDTFRASGAGGQHVNKTDSAIRITHL 252
Query: 311 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 370
PTG+ + QDERSQH NKAKA+ VL A+L E+++ ++++R +G+GDRS+RIRT
Sbjct: 253 PTGVVVECQDERSQHKNKAKAMSVLQARLTAAEQAKAQSEQTEMRRNLVGTGDRSDRIRT 312
Query: 371 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
YNFPQGR+TDHR+ +T + + ++MEG ++D + L+ + + D +A+
Sbjct: 313 YNFPQGRMTDHRINLTLYKLDEIMEG-DIDQIVGPLIQEHQADQLAAL 359
>gi|254468209|ref|ZP_05081615.1| peptide chain release factor 1 [beta proteobacterium KB13]
gi|207087019|gb|EDZ64302.1| peptide chain release factor 1 [beta proteobacterium KB13]
Length = 358
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 153/302 (50%), Positives = 208/302 (68%), Gaps = 8/302 (2%)
Query: 122 GLKSLIYECSEDKDML------DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
G K L+ E K+ML + A EE+ + DE +S L L+PKD D+++ L
Sbjct: 54 GYKKLVKNIEEAKEMLSDPEMKEFAQEEIDNSKDEIINFESKLQTLLIPKDPNDDKNIFL 113
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG+E++LFA D+++MY RY+++ W EV+ ES L GYKE A I+G G Y
Sbjct: 114 EIRAGTGGDESALFAADLYRMYTRYAERNNWNVEVISSNESGLGGYKEIIAKINGDGAYS 173
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSG 294
KLKFESG HRVQRVP TE GR+HTSA +VA+LP+ADE+ DV + D+RIDTYR+ G+G
Sbjct: 174 KLKFESGGHRVQRVPDTETQGRIHTSACTVAVLPEADEIEDVDINPADIRIDTYRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH N T+SAVR+TH PTG+ + QD+RSQH NKA+A+ +L AK+ + + R+
Sbjct: 234 GQHINKTDSAVRITHEPTGIVVECQDDRSQHRNKAQAMSILAAKIKDNQIQAQQSQRASE 293
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R IGSGDRSERIRTYNFPQGR+TDHR+ +T + I +M+G+ L+ I+AL L+ +
Sbjct: 294 RKSLIGSGDRSERIRTYNFPQGRITDHRINLTLYKIDFIMDGD-LEEMINALSLEHQASL 352
Query: 415 IA 416
+A
Sbjct: 353 LA 354
>gi|146311983|ref|YP_001177057.1| peptide chain release factor 1 [Enterobacter sp. 638]
gi|166977363|sp|A4WBC6.1|RF1_ENT38 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145318859|gb|ABP61006.1| bacterial peptide chain release factor 1 (bRF-1) [Enterobacter sp.
638]
Length = 360
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 153/324 (47%), Positives = 223/324 (68%), Gaps = 6/324 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q++I+ + ++ +D +M +MA EEL A + ++
Sbjct: 39 SREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQEELQEAKARAEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGEGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEVPEAEL 214
Query: 277 RLRNE-DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
N DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPGDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++ME
Sbjct: 275 GSRIRAAEIAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTIYRLDEIME 334
Query: 396 GENLDIFIDALLLQQEMDAIASFG 419
G+ LD I+ ++ + + D +A+
Sbjct: 335 GK-LDSLIEPIVQEYQADQLAALA 357
>gi|418845138|ref|ZP_13399924.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392813947|gb|EJA69911.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
Length = 360
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 229/323 (70%), Gaps = 6/323 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q +I+ + ++ +D +M +MA EEL A ++ ++L+
Sbjct: 39 SREYAQLSDVSRCFTDWQQVQDDIETAQMML----DDPEMREMAQEELREAKEKSEQLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ ++E
Sbjct: 95 QLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP+TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPVTESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 R-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVL 335
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 274
Query: 336 CAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMME 395
A+++ E ++ + + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + + ME
Sbjct: 275 GARIHAAETAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETME 334
Query: 396 GENLDIFIDALLLQQEMDAIASF 418
G+ LD+ I+ ++ + + D +A+
Sbjct: 335 GK-LDMLIEPIVQEHQADLLAAL 356
>gi|374261664|ref|ZP_09620242.1| peptide chain release factor 1 [Legionella drancourtii LLAP12]
gi|363537758|gb|EHL31174.1| peptide chain release factor 1 [Legionella drancourtii LLAP12]
Length = 351
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 145/291 (49%), Positives = 208/291 (71%), Gaps = 2/291 (0%)
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+D+++ MA +EL A + L L L+PKD DER+ LEVRAGTGG+EA++F
Sbjct: 59 AGDDQELATMAEDELEDAQKQIDELDEQLQWHLIPKDPDDERNIYLEVRAGTGGDEAAIF 118
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY++ +GW+ E++ + + GYKE A ISG VY +LKFESG HRVQRV
Sbjct: 119 AGDLYRMYSRYAENQGWQLELISASHGEHGGYKEIIARISGNAVYSQLKFESGAHRVQRV 178
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GRVHTSA +VA++P+ +E+D +++ +DLRIDTYRS G+GGQH N T+SA+R+T
Sbjct: 179 PDTESQGRVHTSACTVAVMPEVEEIDDIQINTDDLRIDTYRSSGAGGQHVNKTDSAIRIT 238
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPTG+ + QDERSQH N+AKA+ +L +L + E+S+ +++ R +GSGDRSERI
Sbjct: 239 HIPTGVVVECQDERSQHKNRAKAMSLLKTRLLDAEQSKQKKEQAQTRKSLVGSGDRSERI 298
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RTYN+PQGR+TDHR+ +T + + D+MEG NL + ++ L + + +A G
Sbjct: 299 RTYNYPQGRLTDHRINLTIYQLGDVMEG-NLALVVEPLKREYHAELLAELG 348
>gi|415942784|ref|ZP_11555980.1| Peptide chain release factor 1 [Herbaspirillum frisingense GSF30]
gi|407758794|gb|EKF68568.1| Peptide chain release factor 1 [Herbaspirillum frisingense GSF30]
Length = 355
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 207/292 (70%), Gaps = 2/292 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A EE+ A + L+ L K LLP+D DER+ LE+RAGTGG+E++L
Sbjct: 63 ELLSDPDMKAFAQEEIDGAKARMEALELDLQKMLLPRDPNDERNIFLEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V +ES+L GYKE A I G G Y +LKFESG HRVQR
Sbjct: 123 FAGDLLRMYTRYAERQRWQVEIVSSSESELGGYKEVIARIVGFGAYSRLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + D+RIDTYR+ G+GGQH N T+SAVR+
Sbjct: 183 VPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAVRI 242
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QD+RSQH NKA+A+KVL A++ +++ + R IGSGDRSER
Sbjct: 243 THLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLREQQSKEAATRKSLIGSGDRSER 302
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
IRTYNFPQGR+TDHR+ +T + + +M+G +LD +AL+ + + + +A G
Sbjct: 303 IRTYNFPQGRMTDHRINLTLYKLDFIMDG-DLDELTNALITEHQAELLAQLG 353
>gi|445064894|ref|ZP_21376850.1| peptide chain release factor 1 [Brachyspira hampsonii 30599]
gi|444503725|gb|ELV04531.1| peptide chain release factor 1 [Brachyspira hampsonii 30599]
Length = 358
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 152/321 (47%), Positives = 220/321 (68%), Gaps = 1/321 (0%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
K+ ++ D + +L+T KEI+ +I DK++ DMA E+ +++ + +
Sbjct: 37 KKKSEIEDIVEEYKKLKTVLKEIEESNEMINNTDTDKELKDMALLEIEELNQKKEDIING 96
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
L LLPKD D ++ I+E+R GTGG+E++LF D+F+MY R+ ++ K E++ + ++
Sbjct: 97 LRLLLLPKDKNDGKNIIVEIRVGTGGDESALFVGDLFRMYTRFIERTNLKMEIIDTSPTE 156
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
L GYKE ++SG Y LKFESG HRVQR+P TE GR+HTSA +VA++P+A E DV
Sbjct: 157 LGGYKEVIFSVSGKDAYRTLKFESGTHRVQRIPATESGGRIHTSASTVAVMPEAMESDVV 216
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCA 337
+++ED+R+D +RS G GGQ NTT+SAVR+TH+PTG+ + QDE+SQH NKAKALKVL A
Sbjct: 217 IKDEDIRVDIFRSSGPGGQSVNTTDSAVRITHLPTGLVVQCQDEKSQHKNKAKALKVLRA 276
Query: 338 KLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGE 397
++YE E + +K R EQIGSGDRSERIRTYNFPQ RVTDHR+ +T + + M+GE
Sbjct: 277 RIYEKEEAERKAKEAKERREQIGSGDRSERIRTYNFPQNRVTDHRINLTLYKLDRFMDGE 336
Query: 398 NLDIFIDALLLQQEMDAIASF 418
+I DAL +++ D +AS+
Sbjct: 337 ITEI-TDALFKKEQEDMLASY 356
>gi|420448092|ref|ZP_14946976.1| peptide chain release factor 1 [Helicobacter pylori Hp H-44]
gi|393066905|gb|EJB67723.1| peptide chain release factor 1 [Helicobacter pylori Hp H-44]
Length = 352
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 233/349 (66%), Gaps = 8/349 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I+ +++ +I RR L L+ S AE K L +L I E+ KE
Sbjct: 1 MSILAEKLSSILRRYDELTALL-----SSAEVVSDIKRLTELSKEQSSIEEISVASKEYL 55
Query: 122 GLKSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ I E E DK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+R
Sbjct: 56 SVLENIRENKELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA +F D+FK Y RY+ K WK E++ +E+ + GYKE I G GVY +LK
Sbjct: 116 AGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIISSSENSVGGYKEIIVLIKGKGVYSRLK 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ
Sbjct: 176 FEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PT +++S+QDE+SQH NK KALK+L A+LYE + L+ +K R EQ
Sbjct: 236 NTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQ 295
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
+GSGDRSERIRTYN+PQ R+++HR+ +T +++ ++M NLD I+ L+
Sbjct: 296 VGSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLI 344
>gi|167564255|ref|ZP_02357171.1| peptide chain release factor 1 [Burkholderia oklahomensis EO147]
gi|167571406|ref|ZP_02364280.1| peptide chain release factor 1 [Burkholderia oklahomensis C6786]
Length = 360
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 150/291 (51%), Positives = 206/291 (70%), Gaps = 2/291 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +EL A + RL + L LLPKD DER+ +E+RAGTGG+E++LFA D
Sbjct: 71 DASMRDFAEDELRGARERMGRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ + QD+RSQH NK +ALKVL A++ + + H + R IGSGDRSERIRTY
Sbjct: 251 TGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGSGDRSERIRTY 310
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ 422
NFPQGR+TDHR+ +T + + +M+G +LD I AL+ + + + +AS G +
Sbjct: 311 NFPQGRMTDHRINLTLYKLEQIMDG-DLDELIAALVSEHQAELLASLGDAE 360
>gi|118443694|ref|YP_879014.1| peptide chain release factor 1 [Clostridium novyi NT]
gi|166223551|sp|A0Q312.1|RF1_CLONN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|118134150|gb|ABK61194.1| peptide chain release factor 1 [Clostridium novyi NT]
Length = 357
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 228/333 (68%), Gaps = 2/333 (0%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A+ E+ K KE +L + E +T ++E++ K ++ E + DKDM +M EE+
Sbjct: 26 ANQNEWRKLCKEHAELETIVTKYREYKTNKEELEANKEMLSEET-DKDMKEMIQEEIKTL 84
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ + Q L LLPKD D+++ +E+RAG GG+EA+LFA ++F+MY RY+++ GWK
Sbjct: 85 EESIVKDQEELKILLLPKDPNDDKNVFIEIRAGAGGDEAALFAANLFRMYTRYAERHGWK 144
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
E++ E+D+ G+KE + G Y K+KFESG+HRVQRVP TE SGR+HTS +VA+
Sbjct: 145 TELMSANETDIGGFKEVVFMLRGDCAYSKMKFESGVHRVQRVPDTESSGRIHTSTATVAV 204
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMN 327
LP+ D+VD+++ D+R+D +R+ G GGQ NTT+SAVR+THIPTG+ +S QDE+SQ N
Sbjct: 205 LPEVDDVDIQIDPNDIRVDVFRASGHGGQCVNTTDSAVRMTHIPTGIVVSCQDEKSQLKN 264
Query: 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITH 387
K KA+KVL A+LYE + S S R Q+G+GDRSERIRTYN+PQGRVT+HR+G+T
Sbjct: 265 KEKAMKVLKARLYEKAEAERSASISADRKSQVGTGDRSERIRTYNYPQGRVTEHRIGLTL 324
Query: 388 HAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+ + ++G +++ IDAL+ ++ + + + G+
Sbjct: 325 YKLEAFLDG-DMEEVIDALITAEQAEKMKAMGN 356
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,099,835,350
Number of Sequences: 23463169
Number of extensions: 243995681
Number of successful extensions: 721643
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8475
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 704188
Number of HSP's gapped (non-prelim): 8906
length of query: 422
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 277
effective length of database: 8,957,035,862
effective search space: 2481098933774
effective search space used: 2481098933774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)