BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014582
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8GXI1|RF1_RICB8 Peptide chain release factor 1 OS=Rickettsia bellii (strain OSU
85-389) GN=prfA PE=3 SV=1
Length = 357
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 173/320 (54%), Positives = 236/320 (73%), Gaps = 1/320 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE L D + I E + E++ + E S DK L+M EE+ D
Sbjct: 32 EFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFKQEPSLDKATLEMIEEEIRNLEDSL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD+AD + I+E+RAGTGGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 92 PTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAALFAAKLFNMYQRYAELKGWRFEIL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ E+ + GYKE SA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEV 211
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VD++L +DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 212 EDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 271
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R EQIGSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 272 LKILRARIYEEERRKKDQERANNRREQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 331
Query: 392 DMMEGENLDIFIDALLLQQE 411
+++ G+ LD FI+AL+ E
Sbjct: 332 EVINGQ-LDEFIEALIANDE 350
>sp|A8GSC7|RF1_RICRS Peptide chain release factor 1 OS=Rickettsia rickettsii (strain
Sheila Smith) GN=prfA PE=3 SV=1
Length = 355
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 254/357 (71%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + +R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQARADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRIHLTLYKIDEVVKNGQLDEFVEALIADDE 348
>sp|B0BXT9|RF1_RICRO Peptide chain release factor 1 OS=Rickettsia rickettsii (strain
Iowa) GN=prfA PE=3 SV=1
Length = 355
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 254/357 (71%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + +R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQARADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRIHLTLYKIDEVVKNGQLDEFVEALIADDE 348
>sp|Q1RJT5|RF1_RICBR Peptide chain release factor 1 OS=Rickettsia bellii (strain
RML369-C) GN=prfA PE=3 SV=1
Length = 357
Score = 361 bits (926), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 172/320 (53%), Positives = 236/320 (73%), Gaps = 1/320 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE L D + I E + E++ + E S DK L+M EE+ D
Sbjct: 32 EFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFKQEPSLDKATLEMIEEEIRNLEDSL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD+AD + I+E+RAGTGGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 92 PTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAALFAAKLFNMYQRYAELKGWRFEIL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ E+ + GYKE SA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEV 211
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VD++L +DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 212 EDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 271
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R +QIGSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 272 LKILRARIYEEERRKKDQERANNRRKQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 331
Query: 392 DMMEGENLDIFIDALLLQQE 411
+++ G+ LD FI+AL+ E
Sbjct: 332 EVINGQ-LDEFIEALIANDE 350
>sp|A8GNQ4|RF1_RICAH Peptide chain release factor 1 OS=Rickettsia akari (strain
Hartford) GN=prfA PE=3 SV=1
Length = 355
Score = 361 bits (926), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 169/320 (52%), Positives = 238/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L M +E+ + +
Sbjct: 29 EFVKASKEYAELEDVVVKIKEYNKAKSELEEANNFKLELGFDNATLAMIEDEIHILENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER R+ R QIGSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRNKEQERADSRRGQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD FI+AL+ + E
Sbjct: 329 EVVKNGQLDEFIEALIAEDE 348
>sp|A5V9C3|RF1_SPHWW Peptide chain release factor 1 OS=Sphingomonas wittichii (strain
RW1 / DSM 6014 / JCM 10273) GN=prfA PE=3 SV=1
Length = 360
Score = 360 bits (924), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 252/358 (70%), Gaps = 6/358 (1%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I R+ IE R L+ L+ + + ++ + +K+ ++ E+R + E+D L
Sbjct: 4 ITSARIAQIEARRDELQALMARGDLPSDQFVQLSKDYAEIEPVAQAAGEVRRLRAELDVL 63
Query: 124 KSLIYECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
K + + + D ++ MA EE+ + E +R +L LK LLP+D ADER +LE+RAG
Sbjct: 64 KGMAEDEAGDAELRAMAIEEAEEIRARLPEAER--ALALK-LLPRDAADERSAMLEIRAG 120
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GW+ E++ + +DL GYKE A+++G GV+ +LKFE
Sbjct: 121 TGGDEAALFAGDLFRMYQRYAEDRGWRVELISASAADLGGYKEVVASVTGAGVFARLKFE 180
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV + ++DLRID YRS G GGQ NT
Sbjct: 181 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVHIDDKDLRIDVYRSSGPGGQSVNT 240
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SAVR+TH+PTG+ + QDE+SQH NKAKALKVL +LYEMER R+ R+ R +G
Sbjct: 241 TDSAVRITHLPTGLVVIQQDEKSQHKNKAKALKVLRTRLYEMERERLASERAGARKSMVG 300
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
SGDRSERIRTYNFPQGRVTDHR+ +T H +S+++EG LD + AL+ + E + +A
Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLHRLSEILEGPGLDDLVGALIAEDEAERLAQL 358
>sp|B3CL87|RF1_WOLPP Peptide chain release factor 1 OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=prfA PE=3 SV=1
Length = 363
Score = 358 bits (920), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 248/345 (71%), Gaps = 7/345 (2%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140
NL N S E+ +KE +LR + +I E ++EI L+ ++ + + D D+ ++A
Sbjct: 20 NLENPTNLSQKEFVSFSKEYSELRPIIEIIDEYNILKEEISDLEEIMKDENSDGDIKELA 79
Query: 141 TEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
EEL ++++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+LFA +F+M
Sbjct: 80 KEEL---LEKQKIVLPKVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAALFAAMLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQRVP TE SG
Sbjct: 137 YQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VAILP+ +EVD + +DLRID YRS G GGQ NTT+SAVRVTH+PTG+ +
Sbjct: 197 RLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVV 256
Query: 317 SIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQG 376
QDE+SQH NKAKALKVL A+LYE+ER + + RS +R QIGSGDRSERIRTYNFPQ
Sbjct: 257 IQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKSQIGSGDRSERIRTYNFPQS 316
Query: 377 RVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST 421
R+TDHR+ +T H + +++ LD FI+AL+ + E + + G+
Sbjct: 317 RITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLTGGGNV 361
>sp|Q73IC2|RF1_WOLPM Peptide chain release factor 1 OS=Wolbachia pipientis wMel GN=prfA
PE=3 SV=1
Length = 359
Score = 358 bits (918), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 177/359 (49%), Positives = 254/359 (70%), Gaps = 12/359 (3%)
Query: 65 MEQRVLAIERRSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
ME + ++++ +E NL N S E+ +KE +LR + +I E T ++EI L
Sbjct: 3 MENNLQDLKKKFNDIERNLENPTNLSQKEFITLSKEYSELRPIIKIIDEYNTLKEEISDL 62
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEK------RLQSLLLKSLLPKDDADERDCILEV 177
+ ++ + + + D+ ++A EE EK ++++ L +LLPKD+ D R+ ILE+
Sbjct: 63 EEIMKDENSEGDIKELAKEEFF-----EKHKVLLPKIKAKLKLALLPKDEDDSRNAILEI 117
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEA+LFA +F+MY++Y++++ WKFE + ++ + + GYKEASA I+G V+ +L
Sbjct: 118 RAGTGGEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARL 177
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE SGR+HTSA +VAILP+ +EVD ++ +DLRID YRS G GGQ
Sbjct: 178 KFESGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQS 237
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
NTT+SAVRVTH+PTG+ + QDE+SQH NKAKALKVL A+LYE+ER + + RS +R
Sbjct: 238 VNTTDSAVRVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKS 297
Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
QIGSGDRSERIRTYNFPQ R+TDHR+ +T H + +++ LD FI+AL+ + E + +A
Sbjct: 298 QIGSGDRSERIRTYNFPQSRITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLA 356
>sp|Q8YJ95|RF1_BRUME Peptide chain release factor 1 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=prfA PE=3 SV=2
Length = 359
Score = 356 bits (913), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 180/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEGE LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGE-LDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|C0RFB5|RF1_BRUMB Peptide chain release factor 1 OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=prfA PE=3 SV=1
Length = 359
Score = 356 bits (913), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 180/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEGE LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGE-LDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|Q5GSS8|RF1_WOLTR Peptide chain release factor 1 OS=Wolbachia sp. subsp. Brugia
malayi (strain TRS) GN=prfA PE=3 SV=1
Length = 359
Score = 355 bits (912), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 178/349 (51%), Positives = 251/349 (71%), Gaps = 13/349 (3%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
IER+ LEN N S E+ +KE +LR + +I+E T +KEI L+ +I + +
Sbjct: 17 IERK---LENPTN---LSQKEFINLSKEYSELRPIIKIINEYDTLKKEILDLEEIIKDEN 70
Query: 132 EDKDMLDMATEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+ D+ ++A EE +++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+
Sbjct: 71 SEYDIKELAKEEF---FEKQKVLLPQVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAA 127
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA +F+MY++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQ
Sbjct: 128 LFAAMLFRMYQKYAERRNWKFEPISISSTGIGGYKEASALINGTEVFARLKFESGVHRVQ 187
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE SGR+HTSA +VAILP+ +EVD ++ +DLRID YRS G GGQ NTT+SAVRV
Sbjct: 188 RVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNTTDSAVRV 247
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PT M + QDE+SQH NKAKALKVL A+LYE+ER + + RS +R QIGSGDRSER
Sbjct: 248 THLPTEMVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEIERSTMRKSQIGSGDRSER 307
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
IRTYNFPQ R+TDHR+ +T H + +++ LD FI+ L+ + E + +A
Sbjct: 308 IRTYNFPQSRITDHRINLTSHQLEQIIKEGELDEFIEVLISRNEAERLA 356
>sp|A7HTY3|RF1_PARL1 Peptide chain release factor 1 OS=Parvibaculum lavamentivorans
(strain DS-1 / DSM 13023 / NCIMB 13966) GN=prfA PE=3
SV=1
Length = 355
Score = 355 bits (911), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 162/286 (56%), Positives = 219/286 (76%)
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+DM +MA EE+ +E RL+ + LLPKD AD+R+ ILEVRAGTGG+EA+LFA D+
Sbjct: 67 RDMAEMAKEEIARLNEELPRLEHEVQLMLLPKDAADDRNVILEVRAGTGGDEAALFAGDL 126
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYERY+ +GWK E++ +E ++ GYKE A ISG GVY KLKFESG+HRVQRVP+TE
Sbjct: 127 FRMYERYASNQGWKVELIAASEGEMGGYKEIIAGISGPGVYAKLKFESGVHRVQRVPVTE 186
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GR+HTSA +VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR+TH+PTG
Sbjct: 187 GGGRIHTSAATVAVLPEAEEVDVEIEDKDLRIDVYRASGAGGQHVNKTESAVRITHLPTG 246
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ ++ QDE+SQH NKA+A+++L A++++ ER R+ RS R Q+GSGDRSERIRTYNF
Sbjct: 247 IVVAQQDEKSQHKNKARAMQILRARIFDAERERLDRERSAARKGQVGSGDRSERIRTYNF 306
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
PQ RVTDHR+ +T H + ++EGE L IDAL+ + + +A+ G
Sbjct: 307 PQSRVTDHRINLTLHKLDQVLEGEALGELIDALIAEDQAARLAAMG 352
>sp|Q57B22|RF1_BRUAB Peptide chain release factor 1 OS=Brucella abortus biovar 1 (strain
9-941) GN=prfA PE=3 SV=1
Length = 359
Score = 355 bits (910), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|Q2YLN8|RF1_BRUA2 Peptide chain release factor 1 OS=Brucella abortus (strain 2308)
GN=prfA PE=3 SV=1
Length = 359
Score = 355 bits (910), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|B2S825|RF1_BRUA1 Peptide chain release factor 1 OS=Brucella abortus (strain S19)
GN=prfA PE=3 SV=1
Length = 359
Score = 355 bits (910), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|Q8FYK3|RF1_BRUSU Peptide chain release factor 1 OS=Brucella suis biovar 1 (strain
1330) GN=prfA PE=3 SV=1
Length = 359
Score = 355 bits (910), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|A9M8K5|RF1_BRUC2 Peptide chain release factor 1 OS=Brucella canis (strain ATCC 23365
/ NCTC 10854) GN=prfA PE=3 SV=1
Length = 359
Score = 355 bits (910), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|A8EYR1|RF1_RICCK Peptide chain release factor 1 OS=Rickettsia canadensis (strain
McKiel) GN=prfA PE=3 SV=1
Length = 355
Score = 354 bits (909), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 166/325 (51%), Positives = 236/325 (72%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L + + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEEVVEKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW FE++
Sbjct: 89 PKLERAVKIALLPKDEADSKSAIIEVRAGSGGEEAALFAAILFNMYQRYAELKGWHFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ++ + GYKEASA+I G V+ KLK ESG+HRVQR+P TE GR+HTSA +VA+LP+
Sbjct: 149 AIVDTGIGGYKEASASIKGKDVFSKLKCESGVHRVQRIPETESHGRIHTSAATVAVLPEV 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
++VD++L ++DLRIDTYRS G+GGQH NTTNSAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EDVDIKLEDKDLRIDTYRSSGAGGQHVNTTNSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQKRANNRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQEMDAIA 416
++++ LD F+DAL+ E +A
Sbjct: 329 EVVKNGQLDEFVDALIADDEAKKLA 353
>sp|B9JT13|RF1_AGRVS Peptide chain release factor 1 OS=Agrobacterium vitis (strain S4 /
ATCC BAA-846) GN=prfA PE=3 SV=1
Length = 359
Score = 354 bits (908), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 182/353 (51%), Positives = 247/353 (69%), Gaps = 13/353 (3%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+ERR +E ++ A PA Y K E +L+ + I EL +KE+ LK+L+ +
Sbjct: 12 LERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVKAIRELGLAEKEVADLKALLAD 68
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEA 186
S D++M D+A EL D E RL+ L + LLPKD ADE+ ILE+RAGTGG EA
Sbjct: 69 KSTDREMRDLAEMELP---DVEARLEGLEKEIQIQLLPKDAADEKSAILEIRAGTGGSEA 125
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA D+F+MYER++ KGWK EV+ +E D G+KE A ++G GV+ KLKFESG+HRV
Sbjct: 126 ALFAGDLFRMYERFAAGKGWKVEVLSSSEGDAGGFKEIIATVTGRGVFSKLKFESGVHRV 185
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR
Sbjct: 186 QRVPDTETQGRIHTSAATVAVLPEAEEIDIEVRAEDIRIDTMRSSGAGGQHVNTTDSAVR 245
Query: 307 VTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSE 366
+TH+PTG+ ++ E+SQH N+AKA++VL ++L++MER R RS R Q+GSGDRSE
Sbjct: 246 ITHLPTGLVVT-SSEKSQHQNRAKAMQVLRSRLFDMERQRADSERSADRKSQVGSGDRSE 304
Query: 367 RIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
RIRTYNFPQGRVTDHR+ +T + + MM GE +D +DAL+ + +A G
Sbjct: 305 RIRTYNFPQGRVTDHRINLTLYKLDRMMMGE-IDEVVDALIADYQAGQLAQLG 356
>sp|Q2RWE1|RF1_RHORT Peptide chain release factor 1 OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=prfA PE=3 SV=1
Length = 354
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 171/328 (52%), Positives = 239/328 (72%), Gaps = 4/328 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ + ++EL L + I L + E+ G ++L+ +D DM D+A EE+ E
Sbjct: 31 FVRMSRELADLAPVVEAIGRLDDAKAELAGARALL----DDPDMRDLAREEVLRLEAEIP 86
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLP+D+AD+R ILEVRAGTGG+EA+LFA D+ +MYERY+Q++GW+FEV+
Sbjct: 87 ALEHGVKLLLLPRDEADDRGVILEVRAGTGGDEAALFAGDLLRMYERYAQERGWRFEVME 146
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+++D+ G KEASAAISG GV+ +LKFESG+HRVQRVP+TE GR+HTSA +VA+LP+A+
Sbjct: 147 ASDTDIGGIKEASAAISGRGVFARLKFESGVHRVQRVPVTEGGGRIHTSAATVAVLPEAE 206
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKAL 332
EVDV + +DLRIDTYRS G+GGQH NTT+SAVR+TH+P+G+ QDE+SQH NKAKA+
Sbjct: 207 EVDVEIEEKDLRIDTYRSQGAGGQHVNTTDSAVRITHLPSGVVAQCQDEKSQHKNKAKAM 266
Query: 333 KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISD 392
++L KLY+ R +R++ R Q+GSGDRSERIRTYNFPQGRVTDHR+G+T H + +
Sbjct: 267 RMLRTKLYDHARQTADDARAEARRVQVGSGDRSERIRTYNFPQGRVTDHRIGLTLHRLPE 326
Query: 393 MMEGENLDIFIDALLLQQEMDAIASFGS 420
++ G LD I+ L+ + + +A G
Sbjct: 327 VLAGTALDEVIEPLIAEDQATRMAEIGG 354
>sp|A6WXQ3|RF1_OCHA4 Peptide chain release factor 1 OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=prfA PE=3 SV=1
Length = 357
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 179/363 (49%), Positives = 256/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L++ + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSET--YVKLASEYSELQEVVGKIRELTDSRKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCILE 176
L ++ + S D +M +A EEL EKR++ L + LLPKD ADE++ ILE
Sbjct: 59 AVDLAAMRDDASTDAEMRALALEELPGV---EKRIEGLEQEVQILLLPKDAADEKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKADTERSESRR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLT 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|B0CIC3|RF1_BRUSI Peptide chain release factor 1 OS=Brucella suis (strain ATCC 23445
/ NCTC 10510) GN=prfA PE=3 SV=1
Length = 359
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/363 (49%), Positives = 255/363 (70%), Gaps = 11/363 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIITTVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRS 356
H NTT+SAVR+THIPTG+ + +Q E+SQH N+A+A+++L A+LY+MER + RS+ R
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARR 294
Query: 357 EQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD +DAL+ + +A
Sbjct: 295 SQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEG-DLDELVDALISDHQTALLA 353
Query: 417 SFG 419
G
Sbjct: 354 ELG 356
>sp|Q1GPK3|RF1_SPHAL Peptide chain release factor 1 OS=Sphingopyxis alaskensis (strain
DSM 13593 / LMG 18877 / RB2256) GN=prfA PE=3 SV=1
Length = 355
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 168/359 (46%), Positives = 246/359 (68%), Gaps = 5/359 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ + +++ AI R A L+ + + +PA++ A+KE +L E+ ++E+
Sbjct: 1 MTSVSARQIDAIIERHAALQARMATGDMAPADFVAASKEFAELEPVATAAREVVRLREEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
L ++ D +M MA EE+ + L LLPKD AD R +LE+RAG
Sbjct: 61 VALNEMLA----DPEMKAMAVEEIAAVEAALPAAEHDLALQLLPKDVADSRAAMLEIRAG 116
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+ +MY RY+ +GWK E++ E+++ GYKE A++SG GV+ KLKFE
Sbjct: 117 TGGDEAALFAGDLLRMYSRYADTQGWKVEIISANEAEVGGYKEVVASVSGQGVFAKLKFE 176
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV + + DL+ID YR+ G+GGQH NT
Sbjct: 177 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVAINDSDLKIDIYRASGAGGQHVNT 236
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
T+SA+R+THIPTG+ + QD+RSQH N+AKA++VL A+LY++ER ++H + + R +G
Sbjct: 237 TDSAIRITHIPTGLVVIQQDQRSQHKNRAKAMQVLRARLYDLEREKLHSAEASARKSMVG 296
Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
SGDRSERIRTYNFPQGRVTDHR+ +T H + +++EG +D IDAL+ + + +A G
Sbjct: 297 SGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEG-AMDELIDALIAEDQAQRLAGLG 354
>sp|Q9ZD21|RF1_RICPR Peptide chain release factor 1 OS=Rickettsia prowazekii (strain
Madrid E) GN=prfA PE=3 SV=1
Length = 355
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 166/320 (51%), Positives = 237/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I + + E++ + E + D L+M E+ +
Sbjct: 29 EFVKASKEYAELEDVVVKIKQYNKAKSELEEANNFRLEMALDNATLEMIDNEIHTLENLL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + SLLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RYS+ KGW+FE++
Sbjct: 89 PKLERAVRISLLPKDEADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYSEFKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQR+P TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRIPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+ +D+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EGIDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A+LYE +R + RS R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARLYEEKRRQKEQERSDSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD FI+AL+ E
Sbjct: 329 EVVKHGQLDEFIEALIANDE 348
>sp|C4K0C9|RF1_RICPU Peptide chain release factor 1 OS=Rickettsia peacockii (strain
Rustic) GN=prfA PE=3 SV=1
Length = 355
Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 238/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQERADSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD F++AL+ E
Sbjct: 329 EVVKNGQLDEFVEALIADDE 348
>sp|A8F1S1|RF1_RICM5 Peptide chain release factor 1 OS=Rickettsia massiliae (strain
Mtu5) GN=prfA PE=3 SV=1
Length = 361
Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 253/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>sp|Q98G93|RF1_RHILO Peptide chain release factor 1 OS=Rhizobium loti (strain
MAFF303099) GN=prfA PE=3 SV=1
Length = 359
Score = 352 bits (902), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 175/346 (50%), Positives = 248/346 (71%), Gaps = 10/346 (2%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y K E +L+D + + +LR+ + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVKMASEYAELQDMVAKVRQLRSAEHEQADLEAMLADKGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+A +L D E+R+++L + LLPKD AD+++ ILE+RAGTGG+EA+LFA D+
Sbjct: 76 RALAEADLP---DVEERIEALQKDIQILLLPKDAADDKNAILEIRAGTGGDEAALFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYERY+ ++GW+FE V ++ D G+KE A +SG GV+ LKFESG+HRVQRVP TE
Sbjct: 133 FRMYERYAAERGWRFETVSASDGDAGGFKEIIATVSGKGVFAHLKFESGVHRVQRVPATE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG
Sbjct: 193 ASGRIHTSAATVAVLPEAEEVDIEIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTG 252
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ + +Q E+SQH N+AKA+++L A+LY++ERS+ RS+ R Q+GSGDRSERIRTYNF
Sbjct: 253 IMV-VQAEKSQHQNRAKAMQILRARLYDLERSKADEERSESRKSQVGSGDRSERIRTYNF 311
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
PQGRVTDHR+ +T + + +M GE LD +DAL+ + +A G
Sbjct: 312 PQGRVTDHRINLTLYKLDRVMMGE-LDEIVDALIADHQSKLLADIG 356
>sp|Q4ULG0|RF1_RICFE Peptide chain release factor 1 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=prfA PE=3 SV=1
Length = 355
Score = 351 bits (901), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 167/320 (52%), Positives = 238/320 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A++YE ER + R+ R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I
Sbjct: 269 LKILRARIYEEERRKKEQERADSRRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD F++AL+ E
Sbjct: 329 EVVKNGQLDEFVEALIADDE 348
>sp|Q92HK9|RF1_RICCN Peptide chain release factor 1 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=prfA PE=3 SV=1
Length = 355
Score = 351 bits (901), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 252/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWHFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSGDRSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>sp|C3PNN0|RF1_RICAE Peptide chain release factor 1 OS=Rickettsia africae (strain ESF-5)
GN=prfA PE=3 SV=1
Length = 355
Score = 351 bits (900), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 174/357 (48%), Positives = 253/357 (70%), Gaps = 13/357 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKALK+L A++YE ER + R+
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADS 291
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQE 411
R Q+GSG+RSERIRTYNFPQGRV+DHR+ +T + I ++++ LD F++AL+ E
Sbjct: 292 RRGQVGSGNRSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDE 348
>sp|Q68WK7|RF1_RICTY Peptide chain release factor 1 OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=prfA PE=3 SV=1
Length = 355
Score = 350 bits (898), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 168/320 (52%), Positives = 236/320 (73%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ +L E + D L+M E+ + +
Sbjct: 29 EFVKASKEYAELEDIVVKIKEYNKVKSELEEANNLRLEVALDNATLEMINNEIYILENLL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + SLLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVRISLLPKDEADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAEFKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++ + + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISNTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+ VD+++ ++DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 209 EGVDIKIEDKDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
LK+L A+LYE +R + RS R Q+GSGDRSERIRTYNF GRV+DHR+ +T + I
Sbjct: 269 LKILRARLYEEKRRQKEQERSDSRRWQVGSGDRSERIRTYNFLHGRVSDHRINLTLYKID 328
Query: 392 DMMEGENLDIFIDALLLQQE 411
++++ LD FI+AL+ E
Sbjct: 329 EVVKHGQLDEFIEALIANDE 348
>sp|Q2GBN7|RF1_NOVAD Peptide chain release factor 1 OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=prfA PE=3 SV=1
Length = 354
Score = 348 bits (893), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 244/357 (68%), Gaps = 5/357 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ + + R+ I R A LE + A++ A+++ +L + E+R + E+
Sbjct: 1 MSVSDARLAQIAARFAELEARLASGTLEGADFIAASRDYAELEPVARVAEEVREMRGELV 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L +L +D DM ++A EEL E + L ++LP+D AD R +LE+RAGT
Sbjct: 61 SLAAL-----DDPDMRELADEELARIRAELPEAEHRLAVAMLPRDSADARPAMLEIRAGT 115
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MYERY+ ++GW+ E + V +DL GYKE A ++G GV+ KLKFES
Sbjct: 116 GGDEAALFAADLFRMYERYAAEQGWRVETISVNANDLGGYKEVVANVAGQGVFAKLKFES 175
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ DEVDV + ++DL+ID YR+ G+GGQH NTT
Sbjct: 176 GVHRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVAIEDKDLKIDIYRASGAGGQHVNTT 235
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGS 361
+SAVR+TH+P+G+ ++ QDERSQH NKAKA++VL +LY+M R + ++ R +GS
Sbjct: 236 DSAVRITHLPSGLVVTCQDERSQHKNKAKAMQVLRTRLYDMRREAAQGAEAEARKAMVGS 295
Query: 362 GDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
GDRSERIRTYNFPQGRVTDHR+ +T H + +++EG L IDAL+ + + +A+
Sbjct: 296 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLAELIDALIAEDQSKRLAAM 352
>sp|A1URS5|RF1_BARBK Peptide chain release factor 1 OS=Bartonella bacilliformis (strain
ATCC 35685 / KC583) GN=prfA PE=3 SV=1
Length = 359
Score = 348 bits (893), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 174/348 (50%), Positives = 246/348 (70%), Gaps = 5/348 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ IE+R +E+ + Q P A Y K E +L+ + I L KE
Sbjct: 1 MVSLSQDRMKQIEKRFEIIESQMAQNPNAET--YVKLASEYAELQQIVTPIRTLNALYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+ L+++ D DM +A EEL L + ++L+ + LLPKD ADE+ I+E+RA
Sbjct: 59 VTELEAMANTTQIDADMYALAQEELVLLRQKIEQLEQEIQILLLPKDIADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV +++S++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANAHKWKVEVVSLSDSEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L ++L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRSRLFDIERQKAESERSASRKTQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL 407
GSGDRSERIRTYNFPQGRVTDHR+ +T + + +MEG +LD I+ L+
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEG-DLDELINPLI 344
>sp|Q8U8B8|RF1_AGRT5 Peptide chain release factor 1 OS=Agrobacterium tumefaciens (strain
C58 / ATCC 33970) GN=prfA PE=3 SV=1
Length = 360
Score = 348 bits (892), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 177/368 (48%), Positives = 253/368 (68%), Gaps = 15/368 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E ++ A+ +EYS+ ++K+RD ISE
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAISEAA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
L++L+ + + DKDM D+A EL + L+ + LLPKD ADE+ I
Sbjct: 61 D-------LEALLADKTTDKDMRDLAEMELPEVETRIRELEKDMQVLLLPKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFAATKGWKVEVLSASEGEAGGYKEIIATITGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKL 354
GQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY++ER ++ RS
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQHQNRAKAMQVLRSRLYDIERQKVDSERSAD 292
Query: 355 RSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDA 414
R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EGE +D +DAL+ +
Sbjct: 293 RKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVIEGE-IDELVDALIADYQAGQ 351
Query: 415 IASFGSTQ 422
+A G Q
Sbjct: 352 LAQLGEQQ 359
>sp|Q11E04|RF1_MESSB Peptide chain release factor 1 OS=Mesorhizobium sp. (strain BNC1)
GN=prfA PE=3 SV=1
Length = 359
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/336 (50%), Positives = 250/336 (74%), Gaps = 10/336 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELC 145
SP Y K E +L++ + I LR + E++ L +++ + S D+++ ++A EE+
Sbjct: 28 SPDAYVKLASEYSELQEVANSIRALRKAEAELEDLDTMLADKSIDREIRELAEIDREEVE 87
Query: 146 LAI-DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ D +++LQ LLL PKD+ADE++ ILE+RAGTGG+EA+LFA D+F+MYERY+ ++
Sbjct: 88 SRVEDMQQKLQVLLL----PKDEADEKNAILEIRAGTGGDEAALFAGDLFRMYERYASER 143
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
GW+ EVV +E + GYKE A+++G GV+ +LKFESG+HRVQRVP TE GR+HTSA +
Sbjct: 144 GWRVEVVSASEGEAGGYKEIIASVTGRGVFSRLKFESGVHRVQRVPATEAQGRIHTSAAT 203
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VA+LP+A+++DV ++ ED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+ + + E+SQ
Sbjct: 204 VAVLPEAEDIDVDIKPEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGIMV-VSAEKSQ 262
Query: 325 HMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVG 384
H N+A+A+++L A+L++MERSR RS+ R Q+G+GDRSERIRTYNFPQGRVTDHR+
Sbjct: 263 HQNRARAMQILRARLFDMERSRAANERSEARRLQVGTGDRSERIRTYNFPQGRVTDHRIN 322
Query: 385 ITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+T + + +MEGE LD IDAL+ + +A+ G+
Sbjct: 323 LTLYKLDRVMEGE-LDEVIDALIADHQSKLLAAEGA 357
>sp|Q5PAH2|RF1_ANAMM Peptide chain release factor 1 OS=Anaplasma marginale (strain St.
Maries) GN=prfA PE=3 SV=1
Length = 359
Score = 345 bits (885), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 172/343 (50%), Positives = 239/343 (69%), Gaps = 1/343 (0%)
Query: 79 LENLVNQPEASPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L+ ++ PE+ + + A++E L M LI E +T QKEI+ L+ LI D +++
Sbjct: 17 LKQQLSDPESLGVQAFVVASREYSDLLPIMSLIEEYQTAQKEIEELEGLINSTDTDAELV 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EEL +L+ L SLLPKD D R ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 HLAREELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGTGGEEAALFVCDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WK E +G++ + + GYKEAS I G V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFESGVHRVQRVPETESSGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ +
Sbjct: 197 LHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK+KALKVL A+LY +E+ +I SK+R QIGSGDRSERIRTYNF Q R
Sbjct: 257 QQDEKSQHKNKSKALKVLRARLYNLEKQKIEDEISKMRKSQIGSGDRSERIRTYNFLQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+TDHR+ +T + + +M+ +LD F+DAL+ + + + S
Sbjct: 317 ITDHRINMTLYRLEHIMKEGDLDEFVDALIADDQANKLQQISS 359
>sp|B9KIV2|RF1_ANAMF Peptide chain release factor 1 OS=Anaplasma marginale (strain
Florida) GN=prfA PE=3 SV=1
Length = 359
Score = 345 bits (885), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 172/343 (50%), Positives = 239/343 (69%), Gaps = 1/343 (0%)
Query: 79 LENLVNQPEASPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L+ ++ PE+ + + A++E L M LI E +T QKEI+ L+ LI D +++
Sbjct: 17 LKQQLSDPESLGVQAFVVASREYSDLLPIMSLIEEYQTAQKEIEELEGLINSTDTDAELV 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EEL +L+ L SLLPKD D R ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 HLAREELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGTGGEEAALFVCDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WK E +G++ + + GYKEAS I G V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFESGVHRVQRVPETESSGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ +
Sbjct: 197 LHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK+KALKVL A+LY +E+ +I SK+R QIGSGDRSERIRTYNF Q R
Sbjct: 257 QQDEKSQHKNKSKALKVLRARLYNLEKQKIEDEISKMRKSQIGSGDRSERIRTYNFLQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
+TDHR+ +T + + +M+ +LD F+DAL+ + + + S
Sbjct: 317 ITDHRINMTLYRLEHIMKEGDLDEFVDALIADDQANKLQQISS 359
>sp|Q92MK5|RF1_RHIME Peptide chain release factor 1 OS=Rhizobium meliloti (strain 1021)
GN=prfA PE=3 SV=1
Length = 360
Score = 345 bits (885), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 182/373 (48%), Positives = 258/373 (69%), Gaps = 25/373 (6%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQ---PVVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
S G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH N+AKA++VL ++LY+MER R
Sbjct: 229 SSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQRADS 287
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE +D +DALL
Sbjct: 288 ERSADRRSQVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGE-IDDVVDALLAD 346
Query: 410 QEMDAIASFGSTQ 422
+ +A G Q
Sbjct: 347 YQASQLALLGERQ 359
>sp|B5ZRR4|RF1_RHILW Peptide chain release factor 1 OS=Rhizobium leguminosarum bv.
trifolii (strain WSM2304) GN=prfA PE=3 SV=1
Length = 359
Score = 345 bits (884), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 256/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER+S +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFSAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + MMEGE ++ +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRITDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>sp|B8EI32|RF1_METSB Peptide chain release factor 1 OS=Methylocella silvestris (strain
BL2 / DSM 15510 / NCIMB 13906) GN=prfA PE=3 SV=1
Length = 360
Score = 344 bits (883), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 229/320 (71%), Gaps = 6/320 (1%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
PA Y + ++E L I + R++ +E++GL +++ + + D +M +A EEL D
Sbjct: 27 PALYVQLSREFAGLEQVAAAIRDYRSQMQEVEGLAAMLADPTTDSEMRGLAEEELR---D 83
Query: 150 EEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
++RL++L L +LLPKD ADER ILEVRAGTGG+EA+LFA D+F+MY+RY++ KGW
Sbjct: 84 AKERLEALEHQLKIALLPKDAADERSAILEVRAGTGGDEAALFAGDLFRMYQRYAESKGW 143
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
E++ E G+KE A I+G GV+ KLKFESG HRVQRVP TE GR+HTSA +VA
Sbjct: 144 SVEIISANEGAAGGFKEIIAEIAGRGVFAKLKFESGAHRVQRVPDTETQGRIHTSAATVA 203
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A EVDV + DL+IDT R+ G+GGQH N T SA+R+THIPTG + +QDERSQH
Sbjct: 204 VLPEAQEVDVEINEADLKIDTMRAQGAGGQHVNKTESAIRITHIPTGTIVFVQDERSQHK 263
Query: 327 NKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGIT 386
N+A+A+ +L +++Y+ +R ++ R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T
Sbjct: 264 NRARAMALLRSRIYDEQRQKLDAERAADRRSQVGSGDRSERIRTYNFPQGRVTDHRINLT 323
Query: 387 HHAISDMMEGENLDIFIDAL 406
+ + ++ GE LD IDAL
Sbjct: 324 LYKLDKVITGEALDEVIDAL 343
>sp|Q1MBB2|RF1_RHIL3 Peptide chain release factor 1 OS=Rhizobium leguminosarum bv.
viciae (strain 3841) GN=prfA PE=3 SV=1
Length = 359
Score = 344 bits (883), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 256/367 (69%), Gaps = 13/367 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRVYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AVTELADLETLLEDRSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR 355
QH NTT+SAVR+TH+P+G+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADR 293
Query: 356 SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAI 415
Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+ + +
Sbjct: 294 KSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQL 352
Query: 416 ASFGSTQ 422
A G Q
Sbjct: 353 AQLGEQQ 359
>sp|Q1QQY7|RF1_NITHX Peptide chain release factor 1 OS=Nitrobacter hamburgensis (strain
X14 / DSM 10229) GN=prfA PE=3 SV=1
Length = 361
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 236/347 (68%), Gaps = 3/347 (0%)
Query: 75 RSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LEN L++Q A Y + +EL +L + + R + EI G+ ++I + + D
Sbjct: 15 RHAALENELLSQISAE--RYVQMTRELSELNPVVEAVKNWRAVKTEIAGIDAMIADPATD 72
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+M MA E L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+
Sbjct: 73 AEMRAMAEAERPALGARGDELAQKIRVALLPKDAMDERNVMLEIRAGTGGDEASLFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK E + +E + GYKE A + G G Y KLKFESG+HRVQRVP TE
Sbjct: 133 FRMYERFAGLQGWKVEAISASEGTMGGYKEIVAEVRGRGAYAKLKFESGVHRVQRVPDTE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GRVHTSA +VA+LP+A+EVDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 193 TQGRVHTSAATVAVLPEAEEVDVDIKTDDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 252
Query: 314 MTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373
+ + +QD RSQH N+A A+ +L +++Y+ ER RI+ +RS R +Q+GSGDRSERIRTYNF
Sbjct: 253 IVVMMQDSRSQHKNRASAMNILRSRIYDAERQRINAARSADRKDQVGSGDRSERIRTYNF 312
Query: 374 PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420
PQGRVTDHR+ +T + + ++ G+ L IDAL + + +A+ G
Sbjct: 313 PQGRVTDHRINLTLYKLPQVIAGDALHELIDALTTEHQAAQLATEGG 359
>sp|Q2K3T1|RF1_RHIEC Peptide chain release factor 1 OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=prfA PE=3 SV=2
Length = 359
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/364 (48%), Positives = 248/364 (68%), Gaps = 7/364 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKAVA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E+ L++L+ + S D++M D+A EL + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 ELADLETLLEDKSVDREMRDLAELELPEVRARIEALEQEMQILLLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFASEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQ 358
NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+ ER R RS R Q
Sbjct: 238 NTTDSAVRITHLPTGIVVT-SSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQ 296
Query: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+GSGDRSERIRTYNFPQGRVTDHR+ +T + + MMEGE ++ +DAL+ + +A
Sbjct: 297 VGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGE-IEEVVDALMADYQASQLAQL 355
Query: 419 GSTQ 422
G Q
Sbjct: 356 GEQQ 359
>sp|Q3SVP7|RF1_NITWN Peptide chain release factor 1 OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=prfA PE=3 SV=1
Length = 358
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 232/328 (70%), Gaps = 2/328 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELCLAIDEE 151
Y + +EL +L + + R EI G+ ++I + + D +M MA E L +
Sbjct: 30 YVQMTRELAELNPIVDAVKNWRAVTAEIAGIDAMIADPATDAEMRAMAEAERPALEARND 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ +Q + + +LLPKD DER+ +LEVRAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 90 ELMQKIRV-ALLPKDAMDERNVMLEVRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVI 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E + GYKE A + G G Y ++KFESG+HRVQRVP TE GRVHTSA +VA+LP+A
Sbjct: 149 SASEGTMGGYKEIVAQVQGRGAYARMKFESGVHRVQRVPDTEAQGRVHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
+EVDV +R +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ +S+QD RSQH N+A A
Sbjct: 209 EEVDVDIRPDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVSMQDSRSQHKNRASA 268
Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
+ +L +++Y+ ER RI+ +RS R +Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 269 MNILRSRIYDAERQRINAARSADRKDQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLP 328
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASFG 419
++ G+ L IDAL + + +A+ G
Sbjct: 329 QVIAGDALHELIDALTTEHQAAQLAAEG 356
>sp|Q2W6V3|RF1_MAGSA Peptide chain release factor 1 OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=prfA PE=3 SV=1
Length = 354
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/288 (56%), Positives = 213/288 (73%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D+A EE + L+ + LLPKD+ADE++ I+EVRAGTGGEEA+L
Sbjct: 64 EMMNDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGTGGEEAAL 123
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MYERY+ GW+FEV+ V ++ + G KEASA I+G V+ +LKFESG+HRVQR
Sbjct: 124 FAAELFRMYERYAGLHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFESGVHRVQR 183
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VAI+P+A+EVD++L + DLR D YRS GSGGQ NTT+SAVRVT
Sbjct: 184 VPATESQGRIHTSAATVAIMPEAEEVDIQLNDSDLRFDVYRSQGSGGQSVNTTDSAVRVT 243
Query: 309 HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERI 368
HIPTG+ ++ Q E+SQH NKA ALK+L A+LYE ERS R+ R Q+GSGDRSERI
Sbjct: 244 HIPTGLAVACQQEKSQHKNKATALKLLRARLYERERSAKDAERAAARKSQVGSGDRSERI 303
Query: 369 RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
RTYNFPQGRVTDHR+ +T + I +M G+ LD ++AL+ + + +A
Sbjct: 304 RTYNFPQGRVTDHRINMTLYKIDAVMSGDALDELVEALVAADQAERLA 351
>sp|Q6G5T7|RF1_BARHE Peptide chain release factor 1 OS=Bartonella henselae (strain ATCC
49882 / Houston 1) GN=prfA PE=3 SV=1
Length = 359
Score = 341 bits (875), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 176/360 (48%), Positives = 248/360 (68%), Gaps = 11/360 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAEI--YVKLASEYAELQPIVSSIRALNALYGE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITDLETIISDKLTDVEMRTLAQEELPLLCQKMEQLEQKLQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ + WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASRNWKVEVVSLNEGEVGGYKEIIATISGRGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQI 359
TT+SAVR+THIPTG+ + +Q E+SQH N+A+AL++L A+L+++ER + RS R Q+
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAENERSASRKSQV 297
Query: 360 GSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALL------LQQEMD 413
GSGDRSERIRTYNFPQGRVTDHR+ +T + + ++EG +LD I AL+ L EMD
Sbjct: 298 GSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVLEG-DLDELIHALISDHQTALLMEMD 356
>sp|Q2GGM5|RF1_EHRCR Peptide chain release factor 1 OS=Ehrlichia chaffeensis (strain
Arkansas) GN=prfA PE=3 SV=1
Length = 359
Score = 341 bits (875), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 166/341 (48%), Positives = 239/341 (70%), Gaps = 1/341 (0%)
Query: 79 LENLVNQP-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L++++ P + S + A+KE +L + +I + QK+I GL+ LI D ++
Sbjct: 17 LKSMLEDPSQLSVDSFVAASKEYSELLPVISVIDQYNILQKDIAGLEELINNPETDHELK 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EE + +++ L SLLPKD D R+ ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 SLAKEEFYERQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGTGGEEAALFVTDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WKFE + + + + G+KE S ISG V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 TKYAEQKNWKFEQINSSSTGIGGHKEISLCISGSNVFARLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIP+G+ +
Sbjct: 197 LHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK+KALKVL A+LY +E+ + S++R QIGSGDRSERIRTYNFPQ R
Sbjct: 257 QQDEKSQHKNKSKALKVLRARLYNLEKQKRDAEISQMRKSQIGSGDRSERIRTYNFPQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+TDHR+ +T + + D+M+ NLD FI+AL+ + E + + +
Sbjct: 317 ITDHRINLTLYRLDDIMKEGNLDEFIEALIAEDEANKLKNL 357
>sp|A6UCF2|RF1_SINMW Peptide chain release factor 1 OS=Sinorhizobium medicae (strain
WSM419) GN=prfA PE=3 SV=1
Length = 360
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 178/373 (47%), Positives = 258/373 (69%), Gaps = 25/373 (6%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQ---PVVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIGAMLADRATDKDMRDLAELEKPEIEERVEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGDLFRMYERYAAGKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R+ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIDIRSEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
S G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH N+AKA++VL ++LY+MER R
Sbjct: 229 SSGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQHQNRAKAMQVLRSRLYDMERQRADS 287
Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
RS R Q+GSGDRSERIRTYNFPQGR+TDHR+ +T + + +MEGE +D +DALL
Sbjct: 288 ERSADRRNQVGSGDRSERIRTYNFPQGRLTDHRINLTIYKLDRVMEGE-IDEIVDALLAD 346
Query: 410 QEMDAIASFGSTQ 422
+ +A G Q
Sbjct: 347 YQASQLALLGEKQ 359
>sp|Q3YS23|RF1_EHRCJ Peptide chain release factor 1 OS=Ehrlichia canis (strain Jake)
GN=prfA PE=3 SV=1
Length = 359
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 239/341 (70%), Gaps = 1/341 (0%)
Query: 79 LENLVNQP-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L++++ P + S + A+KE +L + +I + + QK+I L+ LI D ++
Sbjct: 17 LKSILEDPSQLSVDSFVAASKEYSELLPVISVIDQYNSLQKDIADLEELINNPETDHELK 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EE + ++++ L SL+PKD D R+ ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 SLAKEEFYERQKQLPKIKNKLKLSLIPKDRDDARNAILEIRAGTGGEEAALFVTDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WKFE + + + + G+KE S ISG V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 TKYAEQKNWKFEQINSSSTGIGGHKEVSLCISGSNVFARLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIP+G+ +
Sbjct: 197 LHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVI 256
Query: 318 IQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGR 377
QDE+SQH NK KALKVL A+LY +E+ + S++R QIGSGDRSERIRTYNFPQ R
Sbjct: 257 QQDEKSQHKNKNKALKVLRARLYNLEKQKRDSEISQMRKSQIGSGDRSERIRTYNFPQSR 316
Query: 378 VTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
+TDHR+ +T + + D+M+ NLD FIDAL+ + E + + +
Sbjct: 317 ITDHRINLTLYRLEDIMKEGNLDEFIDALIAEDEANKLKNL 357
>sp|Q5NMC7|RF1_ZYMMO Peptide chain release factor 1 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=prfA PE=3 SV=1
Length = 358
Score = 338 bits (868), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/287 (55%), Positives = 211/287 (73%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D ++ MA EEL + L SLLP+D ADER ILE+RAGTGG+EA+LF
Sbjct: 70 DDPELQAMAVEELEANKTALAEAERALALSLLPRDAADERSAILEIRAGTGGDEAALFGG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+ +MY RY+++ GW+ E++ + ++L GYKE +I+G GV+ +LKFESG+HRVQRVP+
Sbjct: 130 DLLRMYSRYAEEHGWRVEMISASAAELGGYKEVVISITGAGVFARLKFESGVHRVQRVPV 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA +VA+LP+A+EVDV + DLRID +RS G GGQ NTT+SAVR+THIP
Sbjct: 190 TESGGRIHTSAATVAVLPEAEEVDVDIDERDLRIDIFRSSGPGGQSVNTTDSAVRITHIP 249
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
+G+ +S QDE+SQH NKAKA+KVL A+LYE ER R+H R+ R +GSGDRSERIRTY
Sbjct: 250 SGIVVSQQDEKSQHKNKAKAMKVLRARLYERERERLHSERAGQRKSMVGSGDRSERIRTY 309
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASF 418
NFPQGRVTDHR+ +T H + +++ G LD I AL+ + E + +AS
Sbjct: 310 NFPQGRVTDHRINLTLHRLPEILAGPGLDEVISALIAEDEAERLASL 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,585,186
Number of Sequences: 539616
Number of extensions: 5978154
Number of successful extensions: 19630
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 17717
Number of HSP's gapped (non-prelim): 1078
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)