Query 014582
Match_columns 422
No_of_seqs 304 out of 1745
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 1E-123 3E-128 918.6 38.1 356 64-420 4-362 (363)
2 TIGR00019 prfA peptide chain r 100.0 3E-104 6E-109 798.6 41.5 354 64-420 4-359 (360)
3 PRK00591 prfA peptide chain re 100.0 2E-103 4E-108 793.0 42.5 355 63-419 2-358 (359)
4 TIGR00020 prfB peptide chain r 100.0 6.9E-99 1E-103 760.9 39.9 335 68-409 24-362 (364)
5 PRK00578 prfB peptide chain re 100.0 5.5E-99 1E-103 762.8 38.7 338 68-412 24-365 (367)
6 PRK06746 peptide chain release 100.0 8.2E-99 2E-103 748.8 36.8 320 83-409 1-324 (326)
7 PRK05589 peptide chain release 100.0 3.9E-98 8E-103 744.9 36.8 320 83-410 1-324 (325)
8 PRK07342 peptide chain release 100.0 8.3E-97 2E-101 737.7 35.4 320 82-410 2-327 (339)
9 PRK08787 peptide chain release 100.0 2.8E-94 6.1E-99 711.8 33.3 301 103-412 2-305 (313)
10 KOG2726 Mitochondrial polypept 100.0 2.4E-91 5.2E-96 701.3 34.3 316 102-419 68-385 (386)
11 COG1186 PrfB Protein chain rel 100.0 6.5E-73 1.4E-77 540.0 16.9 235 173-409 1-237 (239)
12 TIGR03072 release_prfH putativ 100.0 6.2E-65 1.4E-69 477.4 23.0 197 173-374 1-198 (200)
13 PRK08179 prfH peptide chain re 100.0 7.9E-64 1.7E-68 469.9 21.8 196 173-373 2-198 (200)
14 PF00472 RF-1: RF-1 domain; I 100.0 5.7E-37 1.2E-41 265.2 11.3 110 273-382 4-113 (113)
15 PF03462 PCRF: PCRF domain; I 100.0 1E-32 2.2E-37 239.1 12.2 112 129-240 4-115 (115)
16 PRK09256 hypothetical protein; 99.8 1.3E-21 2.9E-26 175.0 7.6 70 275-344 7-100 (138)
17 KOG3429 Predicted peptidyl-tRN 99.5 1.1E-14 2.4E-19 132.4 6.5 71 274-344 33-128 (172)
18 TIGR00634 recN DNA repair prot 83.0 78 0.0017 34.6 19.9 135 72-230 282-428 (563)
19 PRK10636 putative ABC transpor 81.5 6.3 0.00014 43.7 8.8 44 63-106 566-613 (638)
20 PF10458 Val_tRNA-synt_C: Valy 78.7 6.4 0.00014 30.9 5.7 53 62-116 6-61 (66)
21 PF08317 Spc7: Spc7 kinetochor 77.4 49 0.0011 33.7 13.1 23 190-212 278-300 (325)
22 PRK10869 recombination and rep 74.9 58 0.0013 35.8 13.7 86 71-156 276-362 (553)
23 PRK10884 SH3 domain-containing 71.0 50 0.0011 31.9 10.7 83 64-162 90-173 (206)
24 PRK11147 ABC transporter ATPas 70.7 16 0.00035 40.4 8.3 44 62-105 570-616 (635)
25 COG0497 RecN ATPase involved i 68.1 2E+02 0.0044 32.0 18.8 52 61-112 267-318 (557)
26 KOG0995 Centromere-associated 66.9 67 0.0015 35.6 11.7 93 65-160 233-326 (581)
27 PRK11546 zraP zinc resistance 65.6 53 0.0011 30.2 9.1 37 70-106 68-104 (143)
28 PF15188 CCDC-167: Coiled-coil 65.5 41 0.0009 28.3 7.7 50 62-111 7-56 (85)
29 TIGR03545 conserved hypothetic 65.1 48 0.001 36.6 10.4 19 183-201 287-305 (555)
30 PLN02678 seryl-tRNA synthetase 61.6 2.2E+02 0.0049 30.7 14.4 24 139-162 82-105 (448)
31 PTZ00419 valyl-tRNA synthetase 60.8 30 0.00066 40.6 8.4 63 59-121 928-991 (995)
32 PLN02320 seryl-tRNA synthetase 59.7 1.2E+02 0.0026 33.3 12.0 25 138-162 140-164 (502)
33 COG5570 Uncharacterized small 58.8 46 0.001 25.8 6.2 46 65-110 3-52 (57)
34 PF08700 Vps51: Vps51/Vps67; 57.5 98 0.0021 24.8 9.7 33 84-116 2-34 (87)
35 PF12777 MT: Microtubule-bindi 57.3 34 0.00073 35.1 7.1 50 76-125 172-221 (344)
36 COG5491 VPS24 Conserved protei 56.4 1.2E+02 0.0026 29.5 10.2 53 64-116 49-107 (204)
37 PLN02943 aminoacyl-tRNA ligase 56.3 30 0.00065 40.6 7.3 60 60-119 889-949 (958)
38 PF05591 DUF770: Protein of un 56.2 50 0.0011 30.7 7.4 58 87-144 98-155 (157)
39 PRK03918 chromosome segregatio 55.5 1.8E+02 0.004 33.1 13.3 13 94-106 588-600 (880)
40 PRK05431 seryl-tRNA synthetase 55.2 2.9E+02 0.0062 29.4 13.8 71 89-162 26-100 (425)
41 COG1340 Uncharacterized archae 54.9 2.6E+02 0.0055 28.8 12.9 42 71-112 111-152 (294)
42 PF03962 Mnd1: Mnd1 family; I 54.2 1.7E+02 0.0036 27.8 10.8 26 134-159 102-127 (188)
43 KOG2129 Uncharacterized conser 54.0 2.2E+02 0.0047 30.9 12.3 92 59-153 200-307 (552)
44 KOG3850 Predicted membrane pro 53.4 3.1E+02 0.0068 29.3 13.7 72 14-85 209-285 (455)
45 PF07851 TMPIT: TMPIT-like pro 52.3 2.8E+02 0.006 28.9 12.7 96 67-180 4-104 (330)
46 COG1196 Smc Chromosome segrega 51.9 2.8E+02 0.0061 33.3 14.4 78 133-214 1004-1097(1163)
47 TIGR00414 serS seryl-tRNA synt 51.4 3.3E+02 0.0071 29.0 14.0 25 138-162 79-103 (418)
48 smart00787 Spc7 Spc7 kinetocho 50.8 2.6E+02 0.0057 28.7 12.3 22 190-211 273-294 (312)
49 PF03962 Mnd1: Mnd1 family; I 50.2 1.6E+02 0.0035 27.8 10.0 96 58-156 60-156 (188)
50 COG1579 Zn-ribbon protein, pos 49.7 2.8E+02 0.006 27.6 13.2 22 191-212 174-196 (239)
51 PF13710 ACT_5: ACT domain; PD 49.6 42 0.00091 26.0 5.0 38 194-231 6-43 (63)
52 PHA02562 46 endonuclease subun 49.4 2.9E+02 0.0062 29.6 13.0 137 59-208 298-444 (562)
53 PLN02381 valyl-tRNA synthetase 48.6 52 0.0011 39.2 7.7 61 60-120 997-1058(1066)
54 KOG3274 Uncharacterized conser 47.5 12 0.00025 36.0 1.8 110 194-311 76-186 (210)
55 PF06160 EzrA: Septation ring 46.9 3.2E+02 0.007 30.1 13.0 98 61-170 345-442 (560)
56 COG4026 Uncharacterized protei 46.9 1.8E+02 0.004 28.9 9.8 43 141-185 169-211 (290)
57 PRK05729 valS valyl-tRNA synth 44.5 49 0.0011 38.3 6.6 54 60-113 811-865 (874)
58 PF09537 DUF2383: Domain of un 42.3 1.9E+02 0.0041 24.2 8.3 55 106-160 2-56 (111)
59 PF15035 Rootletin: Ciliary ro 41.6 2.7E+02 0.0059 26.3 10.0 68 60-127 16-86 (182)
60 PF09032 Siah-Interact_N: Siah 41.2 79 0.0017 26.2 5.5 43 113-156 5-47 (79)
61 PRK09039 hypothetical protein; 40.6 4.3E+02 0.0094 27.3 13.6 36 91-126 116-152 (343)
62 KOG4360 Uncharacterized coiled 40.4 2.3E+02 0.0049 31.4 10.2 16 371-386 535-551 (596)
63 PF12128 DUF3584: Protein of u 39.1 5.4E+02 0.012 31.1 14.2 52 72-123 748-803 (1201)
64 KOG0971 Microtubule-associated 38.6 2.6E+02 0.0057 33.1 10.7 60 98-160 287-350 (1243)
65 PF04912 Dynamitin: Dynamitin 38.5 4.8E+02 0.01 27.2 13.4 99 57-158 258-366 (388)
66 PRK06737 acetolactate synthase 38.2 83 0.0018 25.8 5.2 39 194-232 16-54 (76)
67 KOG0804 Cytoplasmic Zn-finger 38.0 5.7E+02 0.012 27.9 12.8 61 103-163 384-449 (493)
68 PF11553 DUF3231: Protein of u 37.7 2.2E+02 0.0049 25.8 8.6 58 105-163 18-75 (166)
69 PF01544 CorA: CorA-like Mg2+ 37.3 3.5E+02 0.0076 25.8 10.4 24 61-84 119-142 (292)
70 PRK04863 mukB cell division pr 37.2 3.2E+02 0.007 34.0 12.0 93 110-202 413-510 (1486)
71 PF12761 End3: Actin cytoskele 37.1 3.7E+02 0.008 26.0 10.2 83 65-159 101-184 (195)
72 KOG0994 Extracellular matrix g 36.9 4.9E+02 0.011 32.0 12.6 88 67-154 1468-1561(1758)
73 PRK04778 septation ring format 36.4 5.1E+02 0.011 28.5 12.6 96 62-169 350-445 (569)
74 TIGR02231 conserved hypothetic 36.2 4.8E+02 0.01 28.2 12.2 41 139-180 149-189 (525)
75 PRK04778 septation ring format 36.1 2.9E+02 0.0063 30.4 10.6 50 61-110 166-217 (569)
76 PF04350 PilO: Pilus assembly 36.1 1.5E+02 0.0032 25.7 7.0 42 191-232 53-97 (144)
77 PF08317 Spc7: Spc7 kinetochor 35.8 4.9E+02 0.011 26.5 13.7 66 92-157 164-231 (325)
78 PF14257 DUF4349: Domain of un 35.7 1.2E+02 0.0026 29.6 7.0 37 140-179 167-203 (262)
79 KOG1489 Predicted GTP-binding 35.4 97 0.0021 32.4 6.3 105 173-295 45-161 (366)
80 KOG1760 Molecular chaperone Pr 35.3 3.5E+02 0.0075 24.6 10.4 70 89-158 18-104 (131)
81 PRK13729 conjugal transfer pil 35.0 2.1E+02 0.0047 31.2 9.1 50 6-63 15-64 (475)
82 PF07426 Dynactin_p22: Dynacti 35.0 2.1E+02 0.0045 27.0 8.0 59 69-127 7-70 (174)
83 PF07303 Occludin_ELL: Occludi 34.4 3E+02 0.0065 23.6 8.8 41 63-103 25-68 (101)
84 TIGR03185 DNA_S_dndD DNA sulfu 34.0 5.3E+02 0.012 28.8 12.4 42 66-108 397-438 (650)
85 KOG2509 Seryl-tRNA synthetase 33.9 1.2E+02 0.0027 32.7 6.9 71 89-162 46-116 (455)
86 PF00587 tRNA-synt_2b: tRNA sy 33.8 1.4E+02 0.003 26.9 6.6 49 180-229 118-167 (173)
87 TIGR03358 VI_chp_5 type VI sec 33.0 1.3E+02 0.0029 28.0 6.3 58 87-144 99-156 (159)
88 COG4942 Membrane-bound metallo 32.5 4.5E+02 0.0098 28.3 10.9 63 62-127 33-96 (420)
89 PRK11152 ilvM acetolactate syn 32.2 84 0.0018 25.7 4.4 41 194-234 17-57 (76)
90 PF15466 DUF4635: Domain of un 32.0 24 0.00051 31.6 1.2 47 365-411 55-108 (135)
91 PF09418 DUF2009: Protein of u 31.8 3E+02 0.0066 29.9 9.5 60 173-252 241-315 (458)
92 KOG4603 TBP-1 interacting prot 31.5 4.8E+02 0.01 25.1 10.1 89 89-202 77-166 (201)
93 PRK02224 chromosome segregatio 31.3 6.2E+02 0.013 29.0 12.7 25 60-84 468-492 (880)
94 PRK09039 hypothetical protein; 31.3 5E+02 0.011 26.9 10.8 24 137-160 139-162 (343)
95 PF15188 CCDC-167: Coiled-coil 31.0 2.2E+02 0.0048 24.0 6.7 59 97-161 4-62 (85)
96 PF13801 Metal_resist: Heavy-m 31.0 2.9E+02 0.0063 22.4 7.9 37 71-107 67-103 (125)
97 PRK10280 dipeptidyl carboxypep 30.7 5.1E+02 0.011 29.4 11.6 76 57-147 24-99 (681)
98 PF07106 TBPIP: Tat binding pr 30.5 4.2E+02 0.0091 24.1 12.0 64 89-160 70-134 (169)
99 TIGR02284 conserved hypothetic 30.3 3.4E+02 0.0074 24.2 8.4 53 108-160 3-55 (139)
100 PRK00578 prfB peptide chain re 30.0 5.7E+02 0.012 27.0 11.1 26 332-357 282-307 (367)
101 KOG0994 Extracellular matrix g 29.5 7.8E+02 0.017 30.4 12.7 44 67-110 1201-1244(1758)
102 PF15605 Toxin_52: Putative to 29.4 3.6E+02 0.0078 23.6 7.8 52 60-111 47-98 (103)
103 PF08014 DUF1704: Domain of un 29.3 3.1E+02 0.0067 28.6 9.0 69 185-260 110-187 (349)
104 PF14257 DUF4349: Domain of un 28.8 2.7E+02 0.0058 27.2 8.1 88 67-162 105-196 (262)
105 PRK13562 acetolactate synthase 28.7 1.4E+02 0.0031 25.1 5.2 36 197-232 19-55 (84)
106 PLN02742 Probable galacturonos 28.4 8.1E+02 0.017 27.3 12.2 19 51-69 64-83 (534)
107 PF10666 Phage_Gp14: Phage pro 28.1 3.8E+02 0.0081 24.4 8.0 81 104-206 35-115 (140)
108 COG1196 Smc Chromosome segrega 28.1 5E+02 0.011 31.2 11.5 18 89-106 211-228 (1163)
109 PLN03229 acetyl-coenzyme A car 27.8 4E+02 0.0086 30.9 9.9 14 149-162 695-708 (762)
110 PF08657 DASH_Spc34: DASH comp 27.7 5.5E+02 0.012 25.8 10.1 88 71-159 161-256 (259)
111 PF12252 SidE: Dot/Icm substra 27.3 1.6E+02 0.0035 35.3 6.9 102 61-164 1064-1182(1439)
112 PF12685 SpoIIIAH: SpoIIIAH-li 27.2 5E+02 0.011 24.4 9.4 48 60-107 87-134 (196)
113 PF07888 CALCOCO1: Calcium bin 26.7 5.5E+02 0.012 28.7 10.6 64 92-161 393-457 (546)
114 PF00435 Spectrin: Spectrin re 26.5 3.1E+02 0.0066 21.2 12.3 88 64-156 5-94 (105)
115 PF04156 IncA: IncA protein; 26.3 5.1E+02 0.011 23.7 11.5 22 64-85 92-113 (191)
116 TIGR02168 SMC_prok_B chromosom 26.3 8.4E+02 0.018 28.3 12.7 33 133-165 1020-1055(1179)
117 PF13450 NAD_binding_8: NAD(P) 26.2 1.5E+02 0.0032 23.0 4.7 37 203-247 17-53 (68)
118 PF02403 Seryl_tRNA_N: Seryl-t 25.0 4.1E+02 0.0089 22.2 12.7 72 89-163 27-102 (108)
119 PF02815 MIR: MIR domain; Int 25.0 1E+02 0.0023 28.4 4.2 37 286-322 122-158 (190)
120 PF05529 Bap31: B-cell recepto 24.9 4.2E+02 0.0091 24.6 8.3 15 141-155 174-188 (192)
121 KOG3215 Uncharacterized conser 24.8 4.2E+02 0.009 26.1 8.2 13 10-22 21-33 (222)
122 KOG0996 Structural maintenance 24.6 1.2E+03 0.026 28.6 13.3 29 368-396 1112-1143(1293)
123 TIGR03545 conserved hypothetic 24.5 4.8E+02 0.011 29.0 9.8 22 374-396 495-516 (555)
124 COG0598 CorA Mg2+ and Co2+ tra 23.8 7.6E+02 0.017 24.9 12.3 46 62-112 149-194 (322)
125 KOG1697 Mitochondrial/chloropl 23.6 65 0.0014 32.4 2.7 18 254-271 153-170 (275)
126 COG3516 Predicted component of 23.6 1.7E+02 0.0037 27.7 5.2 59 87-145 104-162 (169)
127 TIGR02680 conserved hypothetic 23.5 4.2E+02 0.0092 32.5 9.9 20 139-158 301-320 (1353)
128 PF04849 HAP1_N: HAP1 N-termin 23.4 4.9E+02 0.011 26.9 8.9 15 113-127 250-264 (306)
129 KOG2129 Uncharacterized conser 23.4 9.9E+02 0.022 26.1 12.6 10 179-188 241-250 (552)
130 PRK11637 AmiB activator; Provi 23.2 8.8E+02 0.019 25.4 13.8 21 65-85 45-65 (428)
131 PTZ00446 vacuolar sorting prot 23.2 6.2E+02 0.013 24.3 9.1 23 139-163 165-187 (191)
132 PRK04863 mukB cell division pr 22.9 1E+03 0.023 29.8 13.0 11 192-202 439-449 (1486)
133 COG0216 PrfA Protein chain rel 22.6 4E+02 0.0088 28.1 8.2 27 327-353 273-299 (363)
134 PF01920 Prefoldin_2: Prefoldi 22.5 4.3E+02 0.0093 21.5 11.6 24 135-158 62-85 (106)
135 PRK06034 hypothetical protein; 22.4 4E+02 0.0088 27.1 8.1 74 221-294 140-215 (279)
136 PRK09546 zntB zinc transporter 21.8 8.2E+02 0.018 24.5 11.9 46 61-106 151-197 (324)
137 COG0172 SerS Seryl-tRNA synthe 21.7 1E+03 0.023 25.7 13.0 70 89-162 27-102 (429)
138 KOG1086 Cytosolic sorting prot 21.6 6E+02 0.013 27.9 9.3 23 89-111 204-226 (594)
139 KOG0933 Structural maintenance 21.5 1.3E+03 0.028 28.0 12.6 60 55-114 155-241 (1174)
140 PF09755 DUF2046: Uncharacteri 21.5 9.2E+02 0.02 25.0 12.7 24 137-160 180-203 (310)
141 cd07599 BAR_Rvs167p The Bin/Am 21.3 7E+02 0.015 23.5 10.5 30 133-162 147-176 (216)
142 TIGR02169 SMC_prok_A chromosom 21.3 1.3E+03 0.029 26.8 15.7 78 133-214 1013-1105(1164)
143 COG4477 EzrA Negative regulato 21.0 1.2E+03 0.026 26.1 12.1 32 139-170 414-445 (570)
144 KOG4674 Uncharacterized conser 20.9 1.4E+03 0.029 29.5 13.3 44 63-108 1281-1324(1822)
145 TIGR00020 prfB peptide chain r 20.8 8E+02 0.017 25.9 10.1 30 328-357 278-307 (364)
146 smart00150 SPEC Spectrin repea 20.7 4E+02 0.0087 20.5 14.0 45 67-111 5-51 (101)
147 smart00787 Spc7 Spc7 kinetocho 20.5 9.3E+02 0.02 24.7 13.5 67 92-158 159-227 (312)
148 TIGR01069 mutS2 MutS2 family p 20.3 1.4E+03 0.029 26.5 13.5 19 326-344 701-719 (771)
149 KOG0996 Structural maintenance 20.2 8.3E+02 0.018 29.9 10.9 46 61-106 901-950 (1293)
150 PF09403 FadA: Adhesion protei 20.1 6.4E+02 0.014 22.6 12.4 20 63-82 23-42 (126)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-123 Score=918.57 Aligned_cols=356 Identities=50% Similarity=0.823 Sum_probs=347.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 014582 64 IMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141 (422)
Q Consensus 64 ~m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~ 141 (422)
.|..+|+.+..||++|+.+|++|++ |++++++++||++.|+++++.|++|++..+++.++++|+.+ +.|+||++||+
T Consensus 4 ~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~-~~D~em~ema~ 82 (363)
T COG0216 4 SLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE-EKDPEMREMAE 82 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 4678999999999999999999986 99999999999999999999999999999999999999986 37999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCc
Q 014582 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221 (422)
Q Consensus 142 eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~ 221 (422)
+|+..++.++..|+.+|..+|||+||+|++|||||||||+||+||++||++||+||.+||+.+||++++++.++++.|||
T Consensus 83 ~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~ 162 (363)
T COG0216 83 EEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGY 162 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCcc-ccccCCCCeEEEEeccCCCCCccccc
Q 014582 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANT 300 (422)
Q Consensus 222 k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~-~~~i~~~dl~i~~~RssGpGGQ~VNk 300 (422)
|++++.|+|.+||+.||||+|||||||||.|+++||+|||+|+|+|||+++++ ++.|+|+||+||||||||||||||||
T Consensus 163 kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNt 242 (363)
T COG0216 163 KEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNT 242 (363)
T ss_pred eEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999875 79999999999999999999999999
Q ss_pred cCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCcccc
Q 014582 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTD 380 (422)
Q Consensus 301 t~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtD 380 (422)
|+|||||||+||||||+||++||||+||++||++|++||++++.+++.++.++.|++|+|+||||+||||||||||||||
T Consensus 243 TdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNfPQnRVTD 322 (363)
T COG0216 243 TDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNFPQNRVTD 322 (363)
T ss_pred cchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccccCccChHHHHHHHHHHHHHHHHHccCC
Q 014582 381 HRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420 (422)
Q Consensus 381 hR~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~~ 420 (422)
||+|+|+|+|+.||+|.+||++|++|..++++++|+++..
T Consensus 323 HRI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~~ 362 (363)
T COG0216 323 HRINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELGE 362 (363)
T ss_pred hhcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999994389999999999999999998753
No 2
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=2.8e-104 Score=798.59 Aligned_cols=354 Identities=48% Similarity=0.802 Sum_probs=344.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 014582 64 IMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141 (422)
Q Consensus 64 ~m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~ 141 (422)
.|.++++.+.+++++|+..+++|+| |+++++++.++++.|+++++.|+++.....++.++.+|+++ +|+||+++|.
T Consensus 4 ~~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~--~D~e~~~~a~ 81 (360)
T TIGR00019 4 SLLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE--SDPEMREMAK 81 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHH
Confidence 4568999999999999999999999 99999999999999999999999999999999999999974 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCc
Q 014582 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221 (422)
Q Consensus 142 eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~ 221 (422)
+|+..+..++++++.+|...|+|++|+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+||
T Consensus 82 ~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ 161 (360)
T TIGR00019 82 EELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGY 161 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCCCcccccc
Q 014582 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301 (422)
Q Consensus 222 k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt 301 (422)
|+|++.|+|++||++|++|+|||||||||+|+++||+|||||+|+|+|.++++++.|+++||+|+|+|||||||||||||
T Consensus 162 ksa~l~i~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt 241 (360)
T TIGR00019 162 KEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVEVDINPADLRIDTFRSSGAGGQHVNTT 241 (360)
T ss_pred eEEEEEEecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCccccccCcccEEEEEEECCCCCCCCcCce
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred CceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCccccc
Q 014582 302 NSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDH 381 (422)
Q Consensus 302 ~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDh 381 (422)
+|||||+|+||||+|.||++|||++||+.||++|+++|++...+++.++....|+.++++++||++||||||||+|||||
T Consensus 242 ~SaVrl~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~~~~rV~Dh 321 (360)
T TIGR00019 242 DSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNFPQNRVTDH 321 (360)
T ss_pred eeeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEECCCCeeeee
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred cccccccCcccccCccChHHHHHHHHHHHHHHHHHccCC
Q 014582 382 RVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 420 (422)
Q Consensus 382 R~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~~ 420 (422)
|||++++||+.||+| +||+||++++.++++++|+++.+
T Consensus 322 Rtg~~~~~l~~vl~G-~Ld~~I~~~l~~~~~~~l~~~~~ 359 (360)
T TIGR00019 322 RINLTLYKLDEVLEG-DLDELIEALIAEDQAQQLAALSE 359 (360)
T ss_pred ccCCeEcChHHHhCC-chHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 79999999999999999988753
No 3
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=1.8e-103 Score=792.99 Aligned_cols=355 Identities=51% Similarity=0.834 Sum_probs=346.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 014582 63 KIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140 (422)
Q Consensus 63 ~~m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a 140 (422)
+.|.++++.+++++.+|++.+++|+| |+++++++.++++.|+++++.|+++....+++.++++|+.+ ++|++|+++|
T Consensus 2 ~~~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~-e~D~~~~~~~ 80 (359)
T PRK00591 2 PSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE-ESDPEMREMA 80 (359)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 35678999999999999999999999 99999999999999999999999999999999999999974 5799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCC
Q 014582 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG 220 (422)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G 220 (422)
++|+..+..++++++.+|...|+|++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|
T Consensus 81 ~~e~~~l~~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g 160 (359)
T PRK00591 81 KEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGG 160 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCCCccccc
Q 014582 221 YKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300 (422)
Q Consensus 221 ~k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNk 300 (422)
|++|++.|+|++||++|++|+|||||||||+|+++||+|||||+|+|+|.++++++.|+++||+|+|+||||||||||||
T Consensus 161 ~ksa~l~i~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNk 240 (359)
T PRK00591 161 YKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVNT 240 (359)
T ss_pred eeEEEEEEecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCccccccCcccEEEEEEECCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCcccc
Q 014582 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTD 380 (422)
Q Consensus 301 t~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtD 380 (422)
|+|||||||+||||+|+|+++|||++||+.|+++|+++|++.+.+++.++.+..|++++++++||++||||||||+||||
T Consensus 241 t~saVrl~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f~~~~V~D 320 (359)
T PRK00591 241 TDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNFPQGRVTD 320 (359)
T ss_pred eeeeEEEEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCCCeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccccCccChHHHHHHHHHHHHHHHHHccC
Q 014582 381 HRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419 (422)
Q Consensus 381 hR~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~ 419 (422)
||||++++||++||+| +||+||++++.++++++|.++.
T Consensus 321 hRtg~~~~~l~~vl~G-~Ld~fI~~~l~~~~~~~l~~~~ 358 (359)
T PRK00591 321 HRINLTLYKLDEVMEG-DLDELIDALIAEDQAEKLAALG 358 (359)
T ss_pred eccCCEEcChHHHhCC-ChHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999 7999999999999999998865
No 4
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=6.9e-99 Score=760.93 Aligned_cols=335 Identities=34% Similarity=0.554 Sum_probs=319.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 014582 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (422)
Q Consensus 68 kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~ 145 (422)
.++.+++++++|+..|++|++ |+++++++.++++.|.++++.|++|.+..+|+.++.+|+++ +.|+||++||.+|+.
T Consensus 24 ~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~-e~D~e~~~~a~~e~~ 102 (364)
T TIGR00020 24 DPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVE-EDDEETFNELDAELK 102 (364)
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 356778899999999999998 99999999999999999999999999999999999999975 579999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEE
Q 014582 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225 (422)
Q Consensus 146 ~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~ 225 (422)
.+.+++++++. ..+|+||+|.++|+|||+||+||+||++||++||+||++||+++||++++++.++++.+|+|+|+
T Consensus 103 ~l~~~l~~le~----~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks~~ 178 (364)
T TIGR00020 103 ALEKKLAELEL----RTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVT 178 (364)
T ss_pred HHHHHHHHHHH----HhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEE
Confidence 99999999983 24468999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCC-CccccccCCCCeEEEEeccCCCCCccccccCce
Q 014582 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA-DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304 (422)
Q Consensus 226 ~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~-~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~sa 304 (422)
+.|+|++||++|++|+|||||||+|+|+++||+|||||+|+|+|.+ +++++.|+++||+|+|+|||||||||||||+||
T Consensus 179 ~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~~~~~~i~~~d~~~~~~rssG~GGQ~VNkt~sa 258 (364)
T TIGR00020 179 ILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSA 258 (364)
T ss_pred EEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCcccceecccccEEEEEeeCCCCCCccccccceE
Confidence 9999999999999999999999999999999999999999999998 467899999999999999999999999999999
Q ss_pred EEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeec-CCCccccccc
Q 014582 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRV 383 (422)
Q Consensus 305 VrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnf-pq~rVtDhR~ 383 (422)
|||||+||||+|+||++|||++||+.|+++|+++|++.+.+++.+++++.|.++. ..+||++|||||| ||+|||||||
T Consensus 259 Vri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~-~~~rg~~IRtY~~~~~~rVtDhR~ 337 (364)
T TIGR00020 259 VRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKS-EIGWGSQIRSYVLHPYSMVKDLRT 337 (364)
T ss_pred EEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCccCCeEEEECCCCCccccccc
Confidence 9999999999999999999999999999999999999999999999988885543 4589999999999 8899999999
Q ss_pred cccccCcccccCccChHHHHHHHHHH
Q 014582 384 GITHHAISDMMEGENLDIFIDALLLQ 409 (422)
Q Consensus 384 g~~~~~l~~vl~G~~Ld~~i~~l~~~ 409 (422)
|++++||+.||+| +||+||++++.+
T Consensus 338 g~~~~~l~~vl~G-~Ld~~I~a~~~~ 362 (364)
T TIGR00020 338 GYETGNVQAVLDG-DIDQFIEAYLKW 362 (364)
T ss_pred CCeecChHHHhCC-ChHHHHHHHHhh
Confidence 9999999999999 799999999875
No 5
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=5.5e-99 Score=762.81 Aligned_cols=338 Identities=37% Similarity=0.581 Sum_probs=321.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 014582 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (422)
Q Consensus 68 kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~ 145 (422)
+++.+++|+++|+..|++|++ |+++++++.++++.|+++++.|++|+...++++++.+|+++ +.|+||++||++|+.
T Consensus 24 ~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~-e~D~el~~~a~~e~~ 102 (367)
T PRK00578 24 DVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEE-EDDEETLAEAEAELK 102 (367)
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 467788999999999999998 99999999999999999999999999999999999999975 469999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEE
Q 014582 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225 (422)
Q Consensus 146 ~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~ 225 (422)
.+.+++++++.+ . +++||+|.++|+|||+||+||+||++||++||+||.+||+.+||++++++.++++.+|+++|+
T Consensus 103 ~l~~~l~~le~~---~-ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks~~ 178 (367)
T PRK00578 103 ALEKKLAALELE---R-LLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSAT 178 (367)
T ss_pred HHHHHHHHHHHH---H-hcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeEEE
Confidence 999999999842 3 347999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCc-cccccCCCCeEEEEeccCCCCCccccccCce
Q 014582 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304 (422)
Q Consensus 226 ~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~sa 304 (422)
+.|+|++||++|++|+|||||||+|+|+++||+|||||+|+|+|.+++ .++.|+++||+|+|+|||||||||||||+||
T Consensus 179 ~~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~~~~~~i~~~dl~~~~~rssGpGGQ~vNkt~sa 258 (367)
T PRK00578 179 FKIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSA 258 (367)
T ss_pred EEEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCCccccccChhhEEEEEeeCCCCCCCcccceeeE
Confidence 999999999999999999999999999999999999999999999976 4889999999999999999999999999999
Q ss_pred EEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeec-CCCccccccc
Q 014582 305 VRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRV 383 (422)
Q Consensus 305 VrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnf-pq~rVtDhR~ 383 (422)
|||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++.++.|+.+ +..+||++|||||| ||+|||||||
T Consensus 259 Vrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~-~~~~rg~~IRtYn~~p~~rVtDhR~ 337 (367)
T PRK00578 259 VRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEK-KEIGWGSQIRSYVLHPYQMVKDLRT 337 (367)
T ss_pred EEEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccCCeEEEECCCCceeeeecc
Confidence 999999999999999999999999999999999999999999999999987665 67899999999999 9999999999
Q ss_pred cccccCcccccCccChHHHHHHHHHHHHH
Q 014582 384 GITHHAISDMMEGENLDIFIDALLLQQEM 412 (422)
Q Consensus 384 g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~ 412 (422)
|++++||++||+| +||+||++|+.+...
T Consensus 338 g~~~~~l~~vl~G-~ld~~I~~l~~~~~~ 365 (367)
T PRK00578 338 GYETGNTQAVLDG-DLDGFIEAYLRWRAS 365 (367)
T ss_pred CceecCHHHhhCC-ChHHHHHHHHHHHhc
Confidence 9999999999999 799999999987643
No 6
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=8.2e-99 Score=748.80 Aligned_cols=320 Identities=35% Similarity=0.544 Sum_probs=308.7
Q ss_pred hcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 83 VNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 83 lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
|..|+| |+++++++.|+++.|+++++.|++|.+..+|+.++.+|+++ ++|+||++||.+|+..+.+++++++ .
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-~~d~e~~~~a~~e~~~l~~~l~~le----~ 75 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKE-EYDEDLHEELESEVKGLIQEMNEYE----L 75 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 467888 99999999999999999999999999999999999999975 5699999999999999999999998 4
Q ss_pred hhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeee
Q 014582 161 SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240 (422)
Q Consensus 161 ~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E 240 (422)
.++|+||+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++|
T Consensus 76 ~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E 155 (326)
T PRK06746 76 QLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAE 155 (326)
T ss_pred HhccCCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccCCCCCCCCceeecceEEEEecCCC-ccccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEc
Q 014582 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD-EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319 (422)
Q Consensus 241 ~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~-~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~ 319 (422)
+|||||||+|||+++||+|||||+|+|+|.++ +++++|+++||+|+|+|||||||||||||+|||||+|+||||+|+||
T Consensus 156 ~GvHrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q 235 (326)
T PRK06746 156 KGVHRLVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 (326)
T ss_pred cceEEEEecCCCCCCCCeEeeEEEEEEecCcCCccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEEC
Confidence 99999999999999999999999999999985 68999999999999999999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeec-CCCccccccccccccCcccccCccC
Q 014582 320 DERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRVGITHHAISDMMEGEN 398 (422)
Q Consensus 320 ~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnf-pq~rVtDhR~g~~~~~l~~vl~G~~ 398 (422)
++|||++||+.|+++|++||++.+.+++.++.+..|+++++. +||++|||||| ||+||||||||++++||+.||+| +
T Consensus 236 ~~RSQ~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~~-~rg~~IRtYnf~p~~rVtDhR~~~~~~~l~~vl~G-~ 313 (326)
T PRK06746 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEI-GWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDG-E 313 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-ccCCCeEEEECCCCceeeeeecCceecChHHhhCC-C
Confidence 999999999999999999999999999999999999998764 79999999999 99999999999999999999999 7
Q ss_pred hHHHHHHHHHH
Q 014582 399 LDIFIDALLLQ 409 (422)
Q Consensus 399 Ld~~i~~l~~~ 409 (422)
||+||++++.+
T Consensus 314 ld~~I~~~~~~ 324 (326)
T PRK06746 314 IDPFIDAYLRS 324 (326)
T ss_pred HHHHHHHHHHc
Confidence 99999999875
No 7
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3.9e-98 Score=744.90 Aligned_cols=320 Identities=36% Similarity=0.593 Sum_probs=305.4
Q ss_pred hcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 83 VNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 83 lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
+++|+| |+++++++.+|++.|+++++.|+.|....+|+.++.+|+.+ +|++|+++|.+|+..+++++++++ .
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~--~d~e~~~~a~~e~~~l~~~l~~~e----~ 74 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE--EDDEMKKEIISEVKNIKEEIDRFK----I 74 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 578998 99999999999999999999999999999999999999964 478899999999999999999987 6
Q ss_pred hhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeee
Q 014582 161 SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240 (422)
Q Consensus 161 ~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E 240 (422)
.+||++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++.++++.+|||+|++.|+|++||++|++|
T Consensus 75 ~~l~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E 154 (325)
T PRK05589 75 ETLLSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAE 154 (325)
T ss_pred HhcCCCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhc
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccCCCCCCCCceeecceEEEEecCCCc-cccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEc
Q 014582 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319 (422)
Q Consensus 241 ~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~ 319 (422)
+|||||||+|+|+++||+|||||+|+|+|++++ .++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||
T Consensus 155 ~GvHrv~r~s~~~~~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q 234 (325)
T PRK05589 155 KGIHRLVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQ 234 (325)
T ss_pred cceEEEEEcCCCCCCCCeEeeeEEEEEecCcCccccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEEC
Confidence 999999999999999999999999999999975 5899999999999999999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeec-CCCccccccccccccCcccccCccC
Q 014582 320 DERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRVGITHHAISDMMEGEN 398 (422)
Q Consensus 320 ~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnf-pq~rVtDhR~g~~~~~l~~vl~G~~ 398 (422)
++|||++||+.|+++|+++|++++.+++.++.++.|. +++..+||++|||||| ||+||||||||++++||+.||+| +
T Consensus 235 ~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~-~~~~~~~g~~IRtY~~~p~~rVtDhR~g~~~~~l~~vl~G-~ 312 (325)
T PRK05589 235 NERSQHSNKETAMKMLKSKLVELKERAHKEKIEDLTG-ELKDMGWGSQIRSYVFHPYNLVKDHRTGVETSNVDSVMDG-D 312 (325)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccCCceeeECCCCceeeeeccCceecChHHhhCC-C
Confidence 9999999999999999999999999988888888764 4566789999999999 99999999999999999999999 7
Q ss_pred hHHHHHHHHHHH
Q 014582 399 LDIFIDALLLQQ 410 (422)
Q Consensus 399 Ld~~i~~l~~~~ 410 (422)
||+||++++.+.
T Consensus 313 Ld~~I~a~l~~~ 324 (325)
T PRK05589 313 IDNFITQYLKGN 324 (325)
T ss_pred HHHHHHHHHhhc
Confidence 999999998763
No 8
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=8.3e-97 Score=737.68 Aligned_cols=320 Identities=37% Similarity=0.572 Sum_probs=302.2
Q ss_pred HhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 82 LVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLL 159 (422)
Q Consensus 82 ~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~ 159 (422)
++++|+| |+++++++.++++.|+++++.|++|....+++.++.+|+++ ++|++|+++|.+|+..+.++++.++ +.
T Consensus 2 ~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~-e~D~el~~~a~~e~~~l~~~l~~~e--l~ 78 (339)
T PRK07342 2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEE-EGDKSIVEDAEKTIRDLKDEIDRRQ--ID 78 (339)
T ss_pred cccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 4678998 99999999999999999999999999999999999999975 4699999999999999999999976 33
Q ss_pred HhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceee
Q 014582 160 KSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239 (422)
Q Consensus 160 ~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~ 239 (422)
.|| .+|+|.++|+|||+||+||+||++||++||+||++||+++||++++++.++++.+|||+|++.|+|++||++|++
T Consensus 79 -~lL-~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~ 156 (339)
T PRK07342 79 -ALL-SGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKT 156 (339)
T ss_pred -HHh-CCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhh
Confidence 333 599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeccccCCCCCCCCceeecceEEEEecCCCc-cccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEE
Q 014582 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318 (422)
Q Consensus 240 E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~ 318 (422)
|+|||||||+|||+++||+|||||+|+|+|.+++ +++.|+++||+|+++|||||||||||||+|||||+|+||||+|+|
T Consensus 157 E~GvHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~ 236 (339)
T PRK07342 157 ESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQC 236 (339)
T ss_pred ccceeEEEecCCCCCCCCeEeEEEEEEEEcCCCcccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEE
Confidence 9999999999999999999999999999999976 589999999999999999999999999999999999999999999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcccccCCCCCceeEeec-CCCccccccccccccCcccccC
Q 014582 319 QDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLR--SEQIGSGDRSERIRTYNF-PQGRVTDHRVGITHHAISDMME 395 (422)
Q Consensus 319 ~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r--~~qi~~~~rsekIRtYnf-pq~rVtDhR~g~~~~~l~~vl~ 395 (422)
|++|||++||+.||++|+++|++.+.+++.++.+..| +.++ .||++|||||| ||+||||||||++++||+.||+
T Consensus 237 ~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i---~~g~~IRtY~~~p~~rVtDhRtg~~~~~l~~vl~ 313 (339)
T PRK07342 237 QQERSQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDI---GWGHQIRSYVLQPYQLVKDLRTGVESTNPQDVLD 313 (339)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cccCCcCCccCCCCceeeeeccCceecChHHhhC
Confidence 9999999999999999999999999999888888655 5555 47779999999 9999999999999999999999
Q ss_pred ccChHHHHHHHHHHH
Q 014582 396 GENLDIFIDALLLQQ 410 (422)
Q Consensus 396 G~~Ld~~i~~l~~~~ 410 (422)
| +||+||++++.+.
T Consensus 314 G-~Ld~~I~a~l~~~ 327 (339)
T PRK07342 314 G-DLNEFMEAALAHR 327 (339)
T ss_pred C-CHHHHHHHHHHHH
Confidence 9 7999999999874
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=2.8e-94 Score=711.78 Aligned_cols=301 Identities=34% Similarity=0.556 Sum_probs=283.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCC
Q 014582 103 LRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182 (422)
Q Consensus 103 L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~G 182 (422)
|+..++.|+.+....+|+.++.+|+++ ++|++|+++|.+|+..++.+++.++. ..| +++|+|.++|+|||+||+|
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~-~~d~e~~~~~~~e~~~l~~~~~~le~---~~l-L~~~~D~~~a~leI~aG~G 76 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAES-EQDEDTALAVIADLDKYQAHVEKLEF---QRM-FSGQMDGANAFVDIQAGAG 76 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHH---HHH-hCCccccCCcEEEEECCCC
Confidence 678899999999999999999999986 57999999999999999999999984 233 3799999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeccccCCCCCCCCceeecc
Q 014582 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSA 262 (422)
Q Consensus 183 G~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~ 262 (422)
|+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||||||+|||+++||+||||
T Consensus 77 G~Ea~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsf 156 (313)
T PRK08787 77 GTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSF 156 (313)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCc-cccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHH
Q 014582 263 VSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYE 341 (422)
Q Consensus 263 a~V~V~P~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~ 341 (422)
|+|+|+|++++ +++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|++
T Consensus 157 asV~V~P~~~~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~ 236 (313)
T PRK08787 157 TSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYE 236 (313)
T ss_pred EEEEEecCcCcccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999875 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh--hcccccCCCCCceeEeecCCCccccccccccccCcccccCccChHHHHHHHHHHHHH
Q 014582 342 MERSRIHLSRSKLR--SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEM 412 (422)
Q Consensus 342 ~~~~~~~~~~~~~r--~~qi~~~~rsekIRtYnfpq~rVtDhR~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~ 412 (422)
.+.+++.++....| +++++ ||++||||||||+||||||||++++||++||+| +||+||++++.+...
T Consensus 237 ~~~e~~~~~~~~~~~~k~~i~---~g~qIRtY~f~~~~V~DhRtg~~~~~l~~vldG-~ld~fI~a~l~~~~~ 305 (313)
T PRK08787 237 LEVQKRNAEKDALEATKSDIG---WGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDG-DLDEFVEASLKAGLA 305 (313)
T ss_pred HHHHHHHHHHHHHhhhhhhCc---ccccccceeCCCCcceeeccCceEcChhHhhCC-ChHHHHHHHHHHHHh
Confidence 99998888877765 55554 677999999999999999999999999999999 799999999987543
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-91 Score=701.31 Aligned_cols=316 Identities=48% Similarity=0.742 Sum_probs=302.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCC
Q 014582 102 KLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181 (422)
Q Consensus 102 ~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~ 181 (422)
+|..++..+.+......++..++.|.++ ++|++|+++|.+|+..+.+++..+.+++...|||++|+|.++|+|||+||+
T Consensus 68 ~l~~~~~~l~~~~~~~~~~~~lk~l~~~-~e~e~~~~~a~~E~~~~~~~i~~~~~~l~~~lLp~~~~D~~~~iiev~aGa 146 (386)
T KOG2726|consen 68 ELDEVLNALSDRMKLVRELKSLKSLIKE-GEDEDMDELAEEEAEEISKEIERSLHELELSLLPSDPYDAEACIIEVRAGA 146 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEeCCC
Confidence 4555566666666666666668888887 689999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeccccCCCCCCCCceeec
Q 014582 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTS 261 (422)
Q Consensus 182 GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS 261 (422)
||+||++|+.+|++||.+||+.+||++++++..+++.+||++|++.|+|.+|||+|++|.|||||||+|+|++.||+|||
T Consensus 147 GG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg~l~~E~GvHRv~r~p~~e~~gr~hts 226 (386)
T KOG2726|consen 147 GGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYGYLKFEAGVHRVQRVPSTETSGRRHTS 226 (386)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhheeeccCcccceeecCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCC--CccccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHH
Q 014582 262 AVSVAILPQA--DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKL 339 (422)
Q Consensus 262 ~a~V~V~P~~--~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L 339 (422)
|++|+|+|.+ +++++.|+++||+|+++|||||||||||||+|||||+|+||||+|+||++||||+||+.|+.+|+++|
T Consensus 227 tasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiPTGIvv~cq~eRSq~~Nr~~A~~~L~akL 306 (386)
T KOG2726|consen 227 TASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIPTGIVVECQEERSQHKNRALALKRLRAKL 306 (386)
T ss_pred cceEEEeccCCCCccceecCchheeEEecccCCCCcccccccccceEEEeecCceEEEeecHHhHHhhHHHHHHHHHHHH
Confidence 9999999999 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCccccccccccccCcccccCccChHHHHHHHHHHHHHHHHHccC
Q 014582 340 YEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419 (422)
Q Consensus 340 ~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDhR~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~ 419 (422)
+....++...+..+.|+.|+++++|+++||||||+|+||||||++++.+++.+||+| +||+||++++.++.++.+.++.
T Consensus 307 ~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~~q~rv~D~r~~~~~~d~~~~l~G-~Ld~li~~~~~~~~~~~~~e~~ 385 (386)
T KOG2726|consen 307 AVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNFKQDRVTDHRIGLESHDLESFLDG-NLDELIEALLSLRREEDLAELL 385 (386)
T ss_pred HHHHHhhhhHHhhhhhHHhhcccCchhceeecccCccchhhhhhcccccchHHHHhc-cHHHHHHHHHHHhhHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999988764
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-73 Score=539.99 Aligned_cols=235 Identities=40% Similarity=0.671 Sum_probs=224.0
Q ss_pred eeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeccccCCCC
Q 014582 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252 (422)
Q Consensus 173 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~ 252 (422)
|+|+|+||+||+|||+||.|||+||++||+++||++++++..+|+.+|+|||+|.|+|++|||+|+.|.||||++|++|+
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecceEEEEecCCC-ccccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEcCcCCHHHHHHHH
Q 014582 253 EKSGRVHTSAVSVAILPQAD-EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331 (422)
Q Consensus 253 ~~~gR~hTS~a~V~V~P~~~-~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A 331 (422)
++.+|+||||++|.|+|+.+ .++++|+++||+|+|+|||||||||||||+|||||||+||||+|.||.+||||+|++.|
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a 160 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALA 160 (239)
T ss_pred CcCcccccceeeeeecCCCCcccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHHH
Confidence 99999999999999999985 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeec-CCCccccccccccccCcccccCccChHHHHHHHHHH
Q 014582 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409 (422)
Q Consensus 332 ~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnf-pq~rVtDhR~g~~~~~l~~vl~G~~Ld~~i~~l~~~ 409 (422)
+.+|+.+|+..+.+++.++.+..+..+ ...+|+.+||+|.| |+..|+|||++++..+.+.||+| ++|.||++.+.+
T Consensus 161 ~~~l~~kL~~~~~~~Rsqe~n~~~a~~-k~i~wg~qirsyv~~p~~~vKd~Rt~~E~~~~~~v~dg-~~~~~~~~~l~~ 237 (239)
T COG1186 161 RKMLKGKLYILAQEKRSQEKNRERALK-KLIGWGNQIRSYVLDPYQPTKDLRTGVERRNKSKVLDG-DKDGFIKAYLKW 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHhccccCCCccccccccccceeeccHHHhhhh-hHHHHHHhhhhc
Confidence 999999999999999998888766544 34577889999999 58889999999999999999999 899999998765
No 12
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=6.2e-65 Score=477.36 Aligned_cols=197 Identities=23% Similarity=0.337 Sum_probs=182.1
Q ss_pred eeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC-CCceEEEEEEeccccccceeeecceeccccCCC
Q 014582 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDL-RGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251 (422)
Q Consensus 173 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~-~G~k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~ 251 (422)
++|||+||+||+||++||++||+||.+||+++||++++++.++++. +|+|+|++.|+|++||++|+.|.|+|++++.||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 4899999999999999999999999999999999999999999986 569999999999999999988888888777777
Q ss_pred CCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEcCcCCHHHHHHHH
Q 014582 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331 (422)
Q Consensus 252 ~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A 331 (422)
+..++++|||||+|.|+|. +++|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||++|
T Consensus 81 ~r~~~~R~ts~~~V~v~~~----~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A 156 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSA----SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLA 156 (200)
T ss_pred CCCCCCeeEEEEEEEEecC----ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHHHH
Confidence 7777888899999999984 457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecC
Q 014582 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFP 374 (422)
Q Consensus 332 ~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfp 374 (422)
+++|+++|++.+.++++++.+ .|+.++.+++||++||||||+
T Consensus 157 ~~~L~~~l~~~~~~~~~~~~~-~~r~~~~~~~Rg~~iRty~~~ 198 (200)
T TIGR03072 157 TLLLAVRLADLQQEQAAALRA-ERRTAHHQIERGNPVRVFKGE 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhccccccccCceEeeeCC
Confidence 999999999999888755555 466777889999999999986
No 13
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=7.9e-64 Score=469.93 Aligned_cols=196 Identities=22% Similarity=0.300 Sum_probs=178.7
Q ss_pred eeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC-CCceEEEEEEeccccccceeeecceeccccCCC
Q 014582 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDL-RGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251 (422)
Q Consensus 173 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~-~G~k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~ 251 (422)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|||+|++.|+|+++|++|+.|.|+|++++.||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 6899999999999999999999999999999999999999999997 569999999999999999997767776665666
Q ss_pred CCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEcCcCCHHHHHHHH
Q 014582 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331 (422)
Q Consensus 252 ~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A 331 (422)
+..++++||||++|+|+|. ++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|
T Consensus 82 ~~~~~~R~~s~~~V~v~~~----~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A 157 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSA----DEEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLA 157 (200)
T ss_pred CCCCCCceEEEEEEEEeCC----cCccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHHHH
Confidence 6667777789999999976 357899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeec
Q 014582 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNF 373 (422)
Q Consensus 332 ~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnf 373 (422)
+++|+++|++.+.+++.++.++ |+.++++++||++||||.-
T Consensus 158 ~~~L~~~L~~~~~~~~~~~~~~-~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 158 RLLIAWKLEQQQQEQSAALKSQ-RRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhccccccccCceEeeec
Confidence 9999999999998877666665 6667788999999999963
No 14
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=100.00 E-value=5.7e-37 Score=265.19 Aligned_cols=110 Identities=45% Similarity=0.700 Sum_probs=104.4
Q ss_pred ccccccCCCCeEEEEeccCCCCCccccccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014582 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRS 352 (422)
Q Consensus 273 ~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~ 352 (422)
..+++|+++||.|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.++..++......
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~ 83 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTR 83 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhcccccCCCCCceeEeecCCCcccccc
Q 014582 353 KLRSEQIGSGDRSERIRTYNFPQGRVTDHR 382 (422)
Q Consensus 353 ~~r~~qi~~~~rsekIRtYnfpq~rVtDhR 382 (422)
..|+.+....+|+++||+|+||+++|||||
T Consensus 84 ~~~~~~~~~~~~~~~iR~y~~~~~~vk~~R 113 (113)
T PF00472_consen 84 EIRKSQVKRLERKKKIRTYNFPRSRVKDHR 113 (113)
T ss_dssp TTTTTSCCCSSTTSEEEEEETTTTEEEETT
T ss_pred HHHHHHHhHHhhhcceecccCChhhcccCC
Confidence 889999988999999999999999999998
No 15
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=100.00 E-value=1e-32 Score=239.15 Aligned_cols=112 Identities=47% Similarity=0.808 Sum_probs=105.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeE
Q 014582 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208 (422)
Q Consensus 129 e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~ 208 (422)
++++|+||+++|++|+..+.++++.++.++...|+|++|+|..+|+|||+||+||+||++||++|++||++||+++||++
T Consensus 4 ~~~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~ 83 (115)
T PF03462_consen 4 EEEEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKV 83 (115)
T ss_dssp CCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EE
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCceEEEEEEeccccccceeee
Q 014582 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240 (422)
Q Consensus 209 ~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E 240 (422)
++++.++++.+|+|+|++.|+|++||++||+|
T Consensus 84 ~~l~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 84 EVLDYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEEEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred EEEecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 99999999999999999999999999999987
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.85 E-value=1.3e-21 Score=175.03 Aligned_cols=70 Identities=31% Similarity=0.491 Sum_probs=64.8
Q ss_pred ccccCCCCeEEEEeccCCCCCccccccCceEEEEE------eC-----------------Ce-eEEEEcCcCCHHHHHHH
Q 014582 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH------IP-----------------TG-MTISIQDERSQHMNKAK 330 (422)
Q Consensus 275 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH------~P-----------------tG-i~v~~~~~RSQ~~Nk~~ 330 (422)
++.|+++||++.|+|||||||||||||+|+|+|+| +| +| |+|+|+++|||++|++.
T Consensus 7 ~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~~ 86 (138)
T PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNRED 86 (138)
T ss_pred cCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHHH
Confidence 56789999999999999999999999999999996 77 35 99999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014582 331 ALKVLCAKLYEMER 344 (422)
Q Consensus 331 A~~~L~~~L~~~~~ 344 (422)
|+++|.++|.+...
T Consensus 87 al~kL~~~i~~~~~ 100 (138)
T PRK09256 87 ALERLVALIREALK 100 (138)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998664
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.1e-14 Score=132.40 Aligned_cols=71 Identities=34% Similarity=0.454 Sum_probs=62.9
Q ss_pred cccccCCCCeEEEEeccCCCCCccccccCceEEEEE-------eC------------------CeeEEEEcCcCCHHHHH
Q 014582 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH-------IP------------------TGMTISIQDERSQHMNK 328 (422)
Q Consensus 274 ~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrltH-------~P------------------tGi~v~~~~~RSQ~~Nk 328 (422)
.+-.|+.+.+.|.+.||||||||||||++|+|.|+. || ..|++.++.+||||.|.
T Consensus 33 ~~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~Ni 112 (172)
T KOG3429|consen 33 FKGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNI 112 (172)
T ss_pred cCCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccH
Confidence 455688899999999999999999999999999873 33 23999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014582 329 AKALKVLCAKLYEMER 344 (422)
Q Consensus 329 ~~A~~~L~~~L~~~~~ 344 (422)
+.||++|++.|++.+.
T Consensus 113 aDcleKlr~~I~~~~~ 128 (172)
T KOG3429|consen 113 ADCLEKLRDIIRAAEQ 128 (172)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 18
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.96 E-value=78 Score=34.65 Aligned_cols=135 Identities=14% Similarity=0.132 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 014582 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS-ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150 (422)
Q Consensus 72 l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~-~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~ 150 (422)
++.=..+|...+++-++||.+...+..++..+..+...|. .+......++++..-+..-+...+-.+.++.++..+.++
T Consensus 282 l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~ 361 (563)
T TIGR00634 282 VEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEE 361 (563)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3334444555555667899999999999999888877665 222222222232222221122334445555566666655
Q ss_pred HHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCe---EE--EEeeccC------CCC
Q 014582 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK---FE--VVGVTES------DLR 219 (422)
Q Consensus 151 l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~---~~--iv~~~~~------~~~ 219 (422)
+..+-.+|...- ..+|..|......+....|+. +. +...... ...
T Consensus 362 l~~~a~~Ls~~R------------------------~~~a~~l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~ 417 (563)
T TIGR00634 362 LDKAAVALSLIR------------------------RKAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAY 417 (563)
T ss_pred HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCC
Confidence 555543332221 235666666677777665553 33 2221111 235
Q ss_pred CceEEEEEEec
Q 014582 220 GYKEASAAISG 230 (422)
Q Consensus 220 G~k~a~~~i~G 230 (422)
|+..|.|.|+-
T Consensus 418 G~d~v~f~~~~ 428 (563)
T TIGR00634 418 GADQVEFLFSA 428 (563)
T ss_pred CceEEEEEEec
Confidence 77788888753
No 19
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=81.52 E-value=6.3 Score=43.68 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC--C--HHHHHHHHHHHHHhHHH
Q 014582 63 KIMEQRVLAIERRSACLENLVNQPEA--S--PAEYSKANKELRKLRDS 106 (422)
Q Consensus 63 ~~m~~kle~l~~r~~eLe~~lsdP~~--d--~~~~~kl~Ke~~~L~~i 106 (422)
+-++++++.++++.++|+..|.+|++ | ..+...+.+++..++..
T Consensus 566 ~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (638)
T PRK10636 566 ARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSG 613 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHH
Confidence 35778888899999999999999976 3 23677777777777643
No 20
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=78.74 E-value=6.4 Score=30.94 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014582 62 IKIMEQRVLAIERRSACLENLVNQPEA---SPAEYSKANKELRKLRDSMHLISELRTK 116 (422)
Q Consensus 62 ~~~m~~kle~l~~r~~eLe~~lsdP~~---d~~~~~kl~Ke~~~L~~ive~~~~l~~~ 116 (422)
+.-+.+.++.++..+..++..|++|+| -|.+. +.++...|...-..+..+...
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eV--ve~er~kl~~~~~~~~~l~~~ 61 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLSNENFVEKAPEEV--VEKEREKLEELEEELEKLEEA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999998 34322 334444444444444444433
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.44 E-value=49 Score=33.72 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEe
Q 014582 190 AVDVFKMYERYSQKKGWKFEVVG 212 (422)
Q Consensus 190 a~~L~~mY~~~a~~~g~~~~iv~ 212 (422)
+..|-..|..+....||++.-++
T Consensus 278 v~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 278 VKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHCcEEEEEe
Confidence 46678888899999999987665
No 22
>PRK10869 recombination and repair protein; Provisional
Probab=74.94 E-value=58 Score=35.77 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 014582 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS-ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149 (422)
Q Consensus 71 ~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~-~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~ 149 (422)
.+++-..+|...+++-++||++...+..++..|..+..+|- .+.....-.+++.+-++.-+..++-.+.++.++..+.+
T Consensus 276 ~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~ 355 (553)
T PRK10869 276 QIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQ 355 (553)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 34444455555556667899999999988888888776665 22222222222222221112233444555555555555
Q ss_pred HHHHHHH
Q 014582 150 EEKRLQS 156 (422)
Q Consensus 150 ~l~~le~ 156 (422)
++..+-.
T Consensus 356 ~l~~~A~ 362 (553)
T PRK10869 356 QALETAQ 362 (553)
T ss_pred HHHHHHH
Confidence 5554443
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.99 E-value=50 Score=31.91 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 014582 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT-KQKEIDGLKSLIYECSEDKDMLDMATE 142 (422)
Q Consensus 64 ~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~-~~~dl~el~eLl~e~~~D~em~e~a~e 142 (422)
.+..+++.+++++++++.++.+-+-+ +..+.+.+...++.-+.... ..++.+.|.+-+ +.++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l----------~~~~~ 153 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQL----------IVAQK 153 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 34467778888888888777764321 22333333333332222211 222222222222 23555
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 014582 143 ELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 143 El~~l~~~l~~le~~l~~~l 162 (422)
++..++.+++.++.......
T Consensus 154 ~~~~l~~~~~~~~~~~~~~w 173 (206)
T PRK10884 154 KVDAANLQLDDKQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665554443
No 24
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=70.71 E-value=16 Score=40.41 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC--CHH-HHHHHHHHHHHhHH
Q 014582 62 IKIMEQRVLAIERRSACLENLVNQPEA--SPA-EYSKANKELRKLRD 105 (422)
Q Consensus 62 ~~~m~~kle~l~~r~~eLe~~lsdP~~--d~~-~~~kl~Ke~~~L~~ 105 (422)
+..++.+++.++++.++|+..|.+|++ |.. +...+.+++..++.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQ 616 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999975 444 77888887777764
No 25
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=68.15 E-value=2e+02 Score=31.99 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Q 014582 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISE 112 (422)
Q Consensus 61 l~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~ 112 (422)
+...+..-+..+++-..+|...+.+-+|||.+..++..++..|..+..+|..
T Consensus 267 ~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~ 318 (557)
T COG0497 267 LAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGV 318 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444445555666777788888888899999999999999999888766654
No 26
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.91 E-value=67 Score=35.61 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCHHHHHHHHHH
Q 014582 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS-LIYECSEDKDMLDMATEE 143 (422)
Q Consensus 65 m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~e-Ll~e~~~D~em~e~a~eE 143 (422)
+...++.+++...+|+++++.-..++.+...+.++++.|++-++.|..|....+.-....+ .++. =.+-.+.-++|
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~---l~~Eie~kEeE 309 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEM---LKSEIEEKEEE 309 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHH
Confidence 4467778888888888888854447777888888999999999999888766555432211 1111 01113344556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014582 144 LCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 144 l~~l~~~l~~le~~l~~ 160 (422)
++.++.+.+.|...+..
T Consensus 310 ~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666554444
No 27
>PRK11546 zraP zinc resistance protein; Provisional
Probab=65.64 E-value=53 Score=30.20 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHH
Q 014582 70 LAIERRSACLENLVNQPEASPAEYSKANKELRKLRDS 106 (422)
Q Consensus 70 e~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~i 106 (422)
+++-.+..||+.++..|..|++++.++.+|+..|...
T Consensus 68 qqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 68 QQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3466678899999999999999999999999988874
No 28
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=65.53 E-value=41 Score=28.30 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 014582 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS 111 (422)
Q Consensus 62 ~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~ 111 (422)
+.-+++++.....+++.++..+-.+..+|+....+-+|+..|...+..++
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNE 56 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccH
Confidence 34567889999999999999999999999888888888877777665543
No 29
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=65.11 E-value=48 Score=36.62 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 014582 183 GEEASLFAVDVFKMYERYS 201 (422)
Q Consensus 183 G~Ea~~~a~~L~~mY~~~a 201 (422)
|.+...|+..++..|.+..
T Consensus 287 g~~i~~~~~~~~~~y~~~~ 305 (555)
T TIGR03545 287 GPEIRKYLQKFLKYYDQAE 305 (555)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 8889999999888888833
No 30
>PLN02678 seryl-tRNA synthetase
Probab=61.58 E-value=2.2e+02 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 014582 139 MATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
.+.+++..++.+++.++.++...+
T Consensus 82 ~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 82 ELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888887765
No 31
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=60.76 E-value=30 Score=40.56 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 014582 59 NDLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEID 121 (422)
Q Consensus 59 ~~l~~~m~~kle~l~~r~~eLe~~lsdP~~-d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~ 121 (422)
..-+.-+.++++.++++++.++++|++|+| ...-...+.++..+|.+..+.+..+...+.++.
T Consensus 928 ~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 928 KKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555778999999999999999999998 222334455666666665555555555444433
No 32
>PLN02320 seryl-tRNA synthetase
Probab=59.65 E-value=1.2e+02 Score=33.34 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014582 138 DMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
+.+++++..+++++..++.++...+
T Consensus 140 k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888877777776655
No 33
>COG5570 Uncharacterized small protein [Function unknown]
Probab=58.84 E-value=46 Score=25.77 Aligned_cols=46 Identities=15% Similarity=0.384 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHH----HHhcCCCCCHHHHHHHHHHHHHhHHHHHHH
Q 014582 65 MEQRVLAIERRSACLE----NLVNQPEASPAEYSKANKELRKLRDSMHLI 110 (422)
Q Consensus 65 m~~kle~l~~r~~eLe----~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~ 110 (422)
++.+|..+++++..|| +.|+.|..|......+.++.-.|++-++.+
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkL 52 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKL 52 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777776555 566788888777777777776776655544
No 34
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=57.47 E-value=98 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=17.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014582 84 NQPEASPAEYSKANKELRKLRDSMHLISELRTK 116 (422)
Q Consensus 84 sdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~ 116 (422)
++|+||++.+.+-.-....+..+......+...
T Consensus 2 ~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~ 34 (87)
T PF08700_consen 2 DSENFDVDEYFKDLLKNSSIKEIRQLENKLRQE 34 (87)
T ss_pred CCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 567777777766333333344444444444433
No 35
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.27 E-value=34 Score=35.15 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014582 76 SACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125 (422)
Q Consensus 76 ~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~e 125 (422)
+..|...+.+|+|+++...+.++-.+.|-.+|.+...|.....++.=+.+
T Consensus 172 ~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~ 221 (344)
T PF12777_consen 172 IKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQ 221 (344)
T ss_dssp HHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45566678899999999999999999999998888888766654444433
No 36
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=56.37 E-value=1.2e+02 Score=29.46 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014582 64 IMEQRVLAIERRSACLENLVNQP------EASPAEYSKANKELRKLRDSMHLISELRTK 116 (422)
Q Consensus 64 ~m~~kle~l~~r~~eLe~~lsdP------~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~ 116 (422)
.+..||+.+..|+..+...+..- .-+..++.....|+..|..+...+....-.
T Consensus 49 ~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~ 107 (204)
T COG5491 49 KARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLA 107 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777766544432 127888899999999999988887776633
No 37
>PLN02943 aminoacyl-tRNA ligase
Probab=56.31 E-value=30 Score=40.57 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014582 60 DLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKE 119 (422)
Q Consensus 60 ~l~~~m~~kle~l~~r~~eLe~~lsdP~~-d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~d 119 (422)
.-..-+.+++++++++++.++++|++|+| +..-...+.++..+|+...+.+..++..+.+
T Consensus 889 ~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~ 949 (958)
T PLN02943 889 AEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAF 949 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555789999999999999999999998 2222334455566666555555555444333
No 38
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=56.25 E-value=50 Score=30.67 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 014582 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144 (422)
Q Consensus 87 ~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl 144 (422)
+|.|+...+-..++++|..+-+.+..++........+...+++--.|++.++.+..|+
T Consensus 98 DF~Pd~v~~qVp~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l~~el 155 (157)
T PF05591_consen 98 DFHPDAVAEQVPELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKLKSEL 155 (157)
T ss_pred cCCHHHHHHhhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 5789988888889999999999999999988888888887765445788877777665
No 39
>PRK03918 chromosome segregation protein; Provisional
Probab=55.47 E-value=1.8e+02 Score=33.06 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=5.5
Q ss_pred HHHHHHHHHhHHH
Q 014582 94 SKANKELRKLRDS 106 (422)
Q Consensus 94 ~kl~Ke~~~L~~i 106 (422)
..+..++..|+..
T Consensus 588 ~~~~~~~~~l~~~ 600 (880)
T PRK03918 588 EELEERLKELEPF 600 (880)
T ss_pred HHHHHHHHHhhhh
Confidence 3444444444433
No 40
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=55.21 E-value=2.9e+02 Score=29.43 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014582 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL-KSLIYECSEDKDML---DMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el-~eLl~e~~~D~em~---e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
+.++..++.++..++...++.++ ...+.+..- ..+....++.++++ ..+++++..+++++..++.++...+
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr---~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQ---AERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555444333 333333222 22222211122343 3456788888888888888777665
No 41
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=54.88 E-value=2.6e+02 Score=28.76 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Q 014582 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISE 112 (422)
Q Consensus 71 ~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~ 112 (422)
.++..+..|+........+|..-.++.++++.|+...+..+.
T Consensus 111 ~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k 152 (294)
T COG1340 111 SLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444555555555555555554444443
No 42
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.24 E-value=1.7e+02 Score=27.78 Aligned_cols=26 Identities=27% Similarity=0.102 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 134 KDMLDMATEELCLAIDEEKRLQSLLL 159 (422)
Q Consensus 134 ~em~e~a~eEl~~l~~~l~~le~~l~ 159 (422)
.+-|....+++..+..++..++.++.
T Consensus 102 ~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 102 SEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554444
No 43
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=54.02 E-value=2.2e+02 Score=30.86 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHH-H
Q 014582 59 NDLIKIMEQRVLAIERRSACLENLVNQPEAS--------------PAEYSKANKELRKLRDSMHLISELRTK-QKEID-G 122 (422)
Q Consensus 59 ~~l~~~m~~kle~l~~r~~eLe~~lsdP~~d--------------~~~~~kl~Ke~~~L~~ive~~~~l~~~-~~dl~-e 122 (422)
++|+-.+.+|+++++.+-..|.+++.+|-.+ -+.+.....-+..|+.-|+.|+.+... +++.. .
T Consensus 200 EalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 200 EALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778889999999999999888776321 134445555566677778888777533 22222 2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 014582 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKR 153 (422)
Q Consensus 123 l~eLl~e~~~D~em~e~a~eEl~~l~~~l~~ 153 (422)
+..+..+ ..++++....+-..|..+++.
T Consensus 280 ~~qy~~E---e~~~reen~rlQrkL~~e~er 307 (552)
T KOG2129|consen 280 LMQYRAE---EVDHREENERLQRKLINELER 307 (552)
T ss_pred HHHHHHH---HhhHHHHHHHHHHHHHHHHHH
Confidence 3333332 355665555444445444444
No 44
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=53.43 E-value=3.1e+02 Score=29.35 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=39.2
Q ss_pred cccccccccccccCCccccc-hhhhhhcccCCCCCCCccccCCC----CchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014582 14 ALRQLESSSSISHRNPLLHQ-RWFVQRAAATPSLSNFRSYSTEM----LSNDLIKIMEQRVLAIERRSACLENLVNQ 85 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~m~~kle~l~~r~~eLe~~lsd 85 (422)
.+++++|+..|..+.|+--+ .-..+++.-+.+..-..|+.++. .+..++..+...|.+|++-+.-|++.+..
T Consensus 209 ~~~~l~~~~tl~~~~~~gs~~E~~S~~~gSa~~~~n~~~g~~~~n~~~s~~~~l~aileeL~eIk~~q~~Leesye~ 285 (455)
T KOG3850|consen 209 NARALPGSATLVSPPKYGSDDECSSSRPGSAADETNNVPGHGGANPYHSQGAALDAILEELREIKETQALLEESYER 285 (455)
T ss_pred hhccCCCcccccCCCCCCCCcccccCCCCccccccCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677887777766553222 22233444444444555554443 22223666777777777776666655443
No 45
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=52.27 E-value=2.8e+02 Score=28.95 Aligned_cols=96 Identities=19% Similarity=0.308 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCHHHHHHHH
Q 014582 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE-----CSEDKDMLDMAT 141 (422)
Q Consensus 67 ~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e-----~~~D~em~e~a~ 141 (422)
+-.+.+++++++|++. ...+.....++.++.+. ..+.+....+.+.++.+-++. ..++++..+.++
T Consensus 4 eEW~eL~~efq~Lqet-------hr~Y~qKleel~~lQ~~--C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~ 74 (330)
T PF07851_consen 4 EEWEELQKEFQELQET-------HRSYKQKLEELSKLQDK--CSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLE 74 (330)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence 3455566666666643 23333334444444332 122223333333443333321 124666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcC
Q 014582 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180 (422)
Q Consensus 142 eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG 180 (422)
+++.+....+.++| ..+|+. ++.+|.+.=|
T Consensus 75 ~~Ik~r~~~l~DmE-----a~LPkk----NGlyL~liLG 104 (330)
T PF07851_consen 75 EDIKERRCQLFDME-----AFLPKK----NGLYLRLILG 104 (330)
T ss_pred HHHHHHHhhHHHHH-----hhCCCC----CCcccceecc
Confidence 78877777777776 344543 5556655555
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=51.89 E-value=2.8e+02 Score=33.30 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCCCCccc--ceeEEEEcC----------CCcHHHHHHHHHHHHH
Q 014582 133 DKDMLDMATEELCLAIDEEKRLQSLLLK----SLLPKDDADER--DCILEVRAG----------TGGEEASLFAVDVFKM 196 (422)
Q Consensus 133 D~em~e~a~eEl~~l~~~l~~le~~l~~----~llp~~~~D~~--~~~leI~aG----------~GG~Ea~~~a~~L~~m 196 (422)
|...++...+-+..+...+..+-..|.. .|.+.+|.|.- ++.|.++|. +||.=|--..+.||-+
T Consensus 1004 d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi 1083 (1163)
T COG1196 1004 DKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAI 1083 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHH
Confidence 4555555555555566555555543322 23334556643 444555553 7999888888888755
Q ss_pred HHHHHHHcCCeEEEEeec
Q 014582 197 YERYSQKKGWKFEVVGVT 214 (422)
Q Consensus 197 Y~~~a~~~g~~~~iv~~~ 214 (422)
+ ..+-..+.++|..
T Consensus 1084 ~----~~~PaPf~vLDEV 1097 (1163)
T COG1196 1084 Q----KYRPAPFYVLDEV 1097 (1163)
T ss_pred H----hhCCCCeeeeccc
Confidence 4 2344566666644
No 47
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=51.42 E-value=3.3e+02 Score=28.95 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014582 138 DMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
+.+.+++..++++++.++.++...+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 79 KELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888877776654
No 48
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.75 E-value=2.6e+02 Score=28.67 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEE
Q 014582 190 AVDVFKMYERYSQKKGWKFEVV 211 (422)
Q Consensus 190 a~~L~~mY~~~a~~~g~~~~iv 211 (422)
+..|.+-|..+-...||++.-+
T Consensus 273 i~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 273 IEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHhCCeeEec
Confidence 3567777888888899998655
No 49
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.24 E-value=1.6e+02 Score=27.84 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHH
Q 014582 58 SNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY-ECSEDKDM 136 (422)
Q Consensus 58 ~~~l~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~-e~~~D~em 136 (422)
|..-...+..+++.+.++++.++..+.+-.- +..........=..-.....++.....++..+..-+. -...||+.
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~---~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEE---KIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4445566677777777777777766654321 1111111111111222233333333334444432221 12358888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014582 137 LDMATEELCLAIDEEKRLQS 156 (422)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le~ 156 (422)
.+..++++..+...+....+
T Consensus 137 i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777777777666665554
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.69 E-value=2.8e+02 Score=27.64 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHc-CCeEEEEe
Q 014582 191 VDVFKMYERYSQKK-GWKFEVVG 212 (422)
Q Consensus 191 ~~L~~mY~~~a~~~-g~~~~iv~ 212 (422)
.+||..|.+..... |.-+-.+.
T Consensus 174 ~ell~~yeri~~~~kg~gvvpl~ 196 (239)
T COG1579 174 PELLSEYERIRKNKKGVGVVPLE 196 (239)
T ss_pred HHHHHHHHHHHhcCCCceEEeec
Confidence 56788888887765 66554443
No 51
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=49.57 E-value=42 Score=26.02 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEecc
Q 014582 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231 (422)
Q Consensus 194 ~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~ 231 (422)
+.-....+.++||+++-+...+++..|+..+++.+.|+
T Consensus 6 L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 6 LNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 44455677889999999999998889999999999994
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=49.39 E-value=2.9e+02 Score=29.64 Aligned_cols=137 Identities=13% Similarity=0.222 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHhhc
Q 014582 59 NDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHL--------ISELRTKQKEIDGLKSLIYEC 130 (422)
Q Consensus 59 ~~l~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~--------~~~l~~~~~dl~el~eLl~e~ 130 (422)
+.-+..+.+.+..++.+++.++..+.+-.-...++.++.+++..++..+.. ..+......++..+.+...
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~-- 375 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV-- 375 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--
Confidence 334444555666666666666666553221122344444444444332222 1222333333433333322
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEE--EcCCCcHHHHHHHHHHHHHHHHHHHHcCCeE
Q 014582 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV--RAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208 (422)
Q Consensus 131 ~~D~em~e~a~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI--~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~ 208 (422)
+..+-...+.+++.++...+.+++.+.... ..+-+. .+|.-+.=...++..+-++...|+...+..+
T Consensus 376 -~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~----------~~i~~~~~~~g~~~~i~~~~l~~~n~~~~~~L~~l~~~~ 444 (562)
T PHA02562 376 -DNAEELAKLQDELDKIVKTKSELVKEKYHR----------GIVTDLLKDSGIKASIIKKYIPYFNKQINHYLQIMEADY 444 (562)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhheeE
Confidence 122224445556666666666665543321 001010 1233332224455666666666666665443
No 53
>PLN02381 valyl-tRNA synthetase
Probab=48.56 E-value=52 Score=39.16 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014582 60 DLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEI 120 (422)
Q Consensus 60 ~l~~~m~~kle~l~~r~~eLe~~lsdP~~-d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl 120 (422)
.-+.-+.++++.++++++.++..|++|+| +..-...+.++..+|......+..+......+
T Consensus 997 ~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l 1058 (1066)
T PLN02381 997 AELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRL 1058 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999998 22222334455555555554444444443333
No 54
>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]
Probab=47.46 E-value=12 Score=36.04 Aligned_cols=110 Identities=16% Similarity=0.226 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCc
Q 014582 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273 (422)
Q Consensus 194 ~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~ 273 (422)
++-|..-+..+.=++..|...+-.. =.=+|.+.+.-+.++++|-||.|+|- +|+-+++..|+.-|+|---.|.|+..=
T Consensus 76 l~eYaltsAl~DsRF~PIsr~ELp~-L~CsvslL~nFE~i~d~lDWevG~HG-IrieF~~e~g~krsATyLPeVa~EQgW 153 (210)
T KOG3274|consen 76 LREYALTSALKDSRFPPISREELPS-LQCSVSLLTNFEDIFDYLDWEVGVHG-IRIEFTNETGTKRSATYLPEVAAEQGW 153 (210)
T ss_pred HHHHHHHHHhhcccCCCCChhhcCc-eEEEEEeeccchhcccccceeeccce-EEEEEEcCCCcEeeeeecccchhhcCC
Confidence 4567766666666666665433221 02266666777889999999999996 568888877777775432233333210
Q ss_pred cccccCCCCeEE-EEeccCCCCCccccccCceEEEEEeC
Q 014582 274 VDVRLRNEDLRI-DTYRSGGSGGQHANTTNSAVRVTHIP 311 (422)
Q Consensus 274 ~~~~i~~~dl~i-~~~RssGpGGQ~VNkt~saVrltH~P 311 (422)
..++ .| .-.|=+|=+|---+-....+++|--.
T Consensus 154 d~~e------TidsLirKaGY~g~It~~~r~~I~ltRY~ 186 (210)
T KOG3274|consen 154 DQIE------TIDSLIRKAGYKGPITEELRKSIKLTRYR 186 (210)
T ss_pred cHHH------HHHHHHHhcCCCCccCHHHHhheeeeEee
Confidence 0000 01 13466666665444556667776443
No 55
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.89 E-value=3.2e+02 Score=30.11 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 014582 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140 (422)
Q Consensus 61 l~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a 140 (422)
..+.+.++++.+.+++..+...+.+.... |..+..+ +..+.+.+..+...+.++.+...-+.. |+ ..|
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~---yS~i~~~---l~~~~~~l~~ie~~q~~~~~~l~~L~~---dE---~~A 412 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVP---YSEIQEE---LEEIEEQLEEIEEEQEEINESLQSLRK---DE---KEA 412 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcC---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHH
Confidence 45667788888888888888888886652 2222222 233333333344444444333322221 11 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 014582 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADE 170 (422)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~llp~~~~D~ 170 (422)
++.+..+...+..+...+...=||.=|.+.
T Consensus 413 r~~l~~~~~~l~~ikR~lek~nLPGlp~~y 442 (560)
T PF06160_consen 413 REKLQKLKQKLREIKRRLEKSNLPGLPEDY 442 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 788888888888888888888888777653
No 56
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.87 E-value=1.8e+02 Score=28.94 Aligned_cols=43 Identities=30% Similarity=0.274 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHH
Q 014582 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185 (422)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~E 185 (422)
.+.++.++.+...|+..+.. +|..-+|-+.-|=|+.+|.--.|
T Consensus 169 ~erlk~le~E~s~LeE~~~~--l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 169 QERLKRLEVENSRLEEMLKK--LPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHhcccccchH
Confidence 33444444444444432222 23223344445555556644333
No 57
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=44.46 E-value=49 Score=38.29 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhHHHHHHHHHH
Q 014582 60 DLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISEL 113 (422)
Q Consensus 60 ~l~~~m~~kle~l~~r~~eLe~~lsdP~~-d~~~~~kl~Ke~~~L~~ive~~~~l 113 (422)
.-+.-+.+++++++++++.++++|++|+| ...-...+.++..+|......+..+
T Consensus 811 ~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l 865 (874)
T PRK05729 811 AELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKL 865 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999998 2112223344444444443333333
No 58
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=42.28 E-value=1.9e+02 Score=24.21 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 106 ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
+++.++.+.+...+-.+..+-+.+..+|++++..+.+-...-......|+..+..
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~ 56 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQE 56 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444433333468999988888888777777777765544
No 59
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=41.61 E-value=2.7e+02 Score=26.34 Aligned_cols=68 Identities=18% Similarity=0.379 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHH-HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 60 DLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYS-KANKE-LRKLRDSMHLISELRTKQKEIDGLKSLI 127 (422)
Q Consensus 60 ~l~~~m~~kle~l~~r~~eLe~~lsdP~~-d~~~~~-kl~Ke-~~~L~~ive~~~~l~~~~~dl~el~eLl 127 (422)
.|+.-+..|+...+++..+|+..++.+.. +..... ....+ ...|...+..+++=...-++|.+...|+
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lL 86 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALL 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 47888889999999999999999965421 111010 00011 2334444444555555555555555555
No 60
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=41.18 E-value=79 Score=26.24 Aligned_cols=43 Identities=28% Similarity=0.381 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 113 LRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156 (422)
Q Consensus 113 l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~ 156 (422)
+.....|++++..|+.. ..-+-.++++..|+..++.++..++.
T Consensus 5 i~eL~~Dl~El~~Ll~~-a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 5 IEELQLDLEELKSLLEQ-AKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666643 34577899999999999999988874
No 61
>PRK09039 hypothetical protein; Validated
Probab=40.65 E-value=4.3e+02 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHH
Q 014582 91 AEYSKANKELRKLRDSMH-LISELRTKQKEIDGLKSL 126 (422)
Q Consensus 91 ~~~~kl~Ke~~~L~~ive-~~~~l~~~~~dl~el~eL 126 (422)
.++..+..++..++.... .+..+.....+|+.|+..
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444322 333444444444444443
No 62
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.45 E-value=2.3e+02 Score=31.41 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=9.0
Q ss_pred eecCC-Ccccccccccc
Q 014582 371 YNFPQ-GRVTDHRVGIT 386 (422)
Q Consensus 371 Ynfpq-~rVtDhR~g~~ 386 (422)
|-||+ .++.|.|-|.-
T Consensus 535 ~a~~y~~~ilq~r~~~~ 551 (596)
T KOG4360|consen 535 LAQPYLGDILQPRPGVA 551 (596)
T ss_pred HhhhhccccccCCCchh
Confidence 44444 34777776643
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=39.12 E-value=5.4e+02 Score=31.14 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHHHHH----HHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014582 72 IERRSACLE----NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123 (422)
Q Consensus 72 l~~r~~eLe----~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el 123 (422)
...+.++++ ..|++-++|+.....+.+++..|...+..++..+....+....
T Consensus 748 ~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~ 803 (1201)
T PF12128_consen 748 AKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDW 803 (1201)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444 4555667899999999998888888776666665555554443
No 64
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.57 E-value=2.6e+02 Score=33.11 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=39.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 014582 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM----ATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 98 Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~----a~eEl~~l~~~l~~le~~l~~ 160 (422)
......++..+.-++++....|+.+..||+. -|.||.++ +..|+..++++++.|+.+|..
T Consensus 287 raR~e~keaqe~ke~~k~emad~ad~iEmaT---ldKEmAEERaesLQ~eve~lkEr~deletdlEI 350 (1243)
T KOG0971|consen 287 RARKEAKEAQEAKERYKEEMADTADAIEMAT---LDKEMAEERAESLQQEVEALKERVDELETDLEI 350 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777777888888888888885 35665332 444666677777777665544
No 65
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=38.47 E-value=4.8e+02 Score=27.19 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-CHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHH
Q 014582 57 LSNDLIKIMEQRVLAIERRSACLENLVNQP--EA-SPAEYSKANKELRKLRD-------SMHLISELRTKQKEIDGLKSL 126 (422)
Q Consensus 57 ~~~~l~~~m~~kle~l~~r~~eLe~~lsdP--~~-d~~~~~kl~Ke~~~L~~-------ive~~~~l~~~~~dl~el~eL 126 (422)
|.+.-+..+..|+..+..+++.|.+.-... +. ...+...+..-+..+.+ +++.++.|+..-.+..+....
T Consensus 258 L~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~ 337 (388)
T PF04912_consen 258 LDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQT 337 (388)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666665555332221 11 22344444444444443 466666666666666666665
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLL 158 (422)
Q Consensus 127 l~e~~~D~em~e~a~eEl~~l~~~l~~le~~l 158 (422)
+..- +.....+..++....+-+..++..+
T Consensus 338 l~~l---e~~q~~l~~~l~~~~~~L~~ve~~~ 366 (388)
T PF04912_consen 338 LSEL---ESQQSDLQSQLKKWEELLNKVEEKF 366 (388)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5431 2334445556666666666666543
No 66
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=38.19 E-value=83 Score=25.77 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccc
Q 014582 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232 (422)
Q Consensus 194 ~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ 232 (422)
+.-....+.++||+++-+...+.+..|+...++.+.|+.
T Consensus 16 L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~ 54 (76)
T PRK06737 16 LLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE 54 (76)
T ss_pred HHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH
Confidence 444567778899999999999888899999999988754
No 67
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.98 E-value=5.7e+02 Score=27.94 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 014582 103 LRDSMHLISELRTKQKEIDGLKSLIYEC-----SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLL 163 (422)
Q Consensus 103 L~~ive~~~~l~~~~~dl~el~eLl~e~-----~~D~em~e~a~eEl~~l~~~l~~le~~l~~~ll 163 (422)
+...-+.++++.+..+++.++..++.+. ..=+++.+-.++.+....+++.+|+++|...|+
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3334445556666666666655544320 001233333444455566666677766666654
No 68
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=37.74 E-value=2.2e+02 Score=25.76 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 014582 105 DSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLL 163 (422)
Q Consensus 105 ~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~ll 163 (422)
++...|..|....-.+..+.-.++- ..|+|+++++..-++..++.++.+++.+...=+
T Consensus 18 Ei~~Lw~~~~~~~~~~~~~~~f~~~-~~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~i 75 (166)
T PF11553_consen 18 EIGNLWNNYMANYMSICLLQYFLQV-AEDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGI 75 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677777777777777666654 579999999999999999999999987777643
No 69
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=37.26 E-value=3.5e+02 Score=25.82 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 014582 61 LIKIMEQRVLAIERRSACLENLVN 84 (422)
Q Consensus 61 l~~~m~~kle~l~~r~~eLe~~ls 84 (422)
++.....-++.+..+++++|..+.
T Consensus 119 ~~~~~~~~l~~l~~~l~~le~~~~ 142 (292)
T PF01544_consen 119 IVDDYFEVLEELEDELDELEDELD 142 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444456677788889999998883
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=37.20 E-value=3.2e+02 Score=34.03 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CcccceeEEEEcCCCcH
Q 014582 110 ISELRTKQKEIDGLKSLIYE-CSEDKDML---DMATEELCLAIDEEKRLQSLLLKSLLPKDD-ADERDCILEVRAGTGGE 184 (422)
Q Consensus 110 ~~~l~~~~~dl~el~eLl~e-~~~D~em~---e~a~eEl~~l~~~l~~le~~l~~~llp~~~-~D~~~~~leI~aG~GG~ 184 (422)
...|.+....+..++++... +=.|+++. +...+.+...+.++.+++.++...=--... ....+.++-+...+-+.
T Consensus 413 l~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~ 492 (1486)
T PRK04863 413 AIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRS 492 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHH
Confidence 34445555555566666531 11244443 223334444444444444433332100000 11223334444456688
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014582 185 EASLFAVDVFKMYERYSQ 202 (422)
Q Consensus 185 Ea~~~a~~L~~mY~~~a~ 202 (422)
+|..||.++++-|..+-.
T Consensus 493 ~a~~~~~~~~~~~~~~~~ 510 (1486)
T PRK04863 493 EAWDVARELLRRLREQRH 510 (1486)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 899999999988876643
No 71
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.14 E-value=3.7e+02 Score=26.04 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 014582 65 MEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEE 143 (422)
Q Consensus 65 m~~kle~l~~r~~eLe~~lsd-P~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eE 143 (422)
+.+.|..|+.++..++....+ +..+..+..-+.+|+-.| |..+.+++.++.+ .......+ ..-+.++
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL---------L~YK~~ql~~~~~--~~~~~~~~-l~~v~~D 168 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL---------LDYKERQLRELEE--GRSKSGKN-LKSVRED 168 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH---------HHHHHHHHHhhhc--cCCCCCCC-HHHHHHH
Confidence 345566666666666655554 222112222222222111 2234455666554 21112222 3456778
Q ss_pred HHHHHHHHHHHHHHHH
Q 014582 144 LCLAIDEEKRLQSLLL 159 (422)
Q Consensus 144 l~~l~~~l~~le~~l~ 159 (422)
|..+++++..|+.-|.
T Consensus 169 l~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 169 LDTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888876553
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.94 E-value=4.9e+02 Score=31.97 Aligned_cols=88 Identities=13% Similarity=0.212 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 014582 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLR------DSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140 (422)
Q Consensus 67 ~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~------~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a 140 (422)
+-.+.+.+-+..+..-+.+|+.||+....+..+.-.|. .+-+.-.+++.....|.....++.....|-.-.+++
T Consensus 1468 ~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L 1547 (1758)
T KOG0994|consen 1468 ESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENL 1547 (1758)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHH
Confidence 33344444556666777788888888888877765442 222222233333333444444454444455555555
Q ss_pred HHHHHHHHHHHHHH
Q 014582 141 TEELCLAIDEEKRL 154 (422)
Q Consensus 141 ~eEl~~l~~~l~~l 154 (422)
.++.....+.-+.+
T Consensus 1548 ~s~A~~a~~~A~~v 1561 (1758)
T KOG0994|consen 1548 QSEAERARSRAEDV 1561 (1758)
T ss_pred HHHHHHHHhHHHHH
Confidence 55555544444333
No 73
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.42 E-value=5.1e+02 Score=28.53 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 014582 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141 (422)
Q Consensus 62 ~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~ 141 (422)
.+.+.+.++.+.+++..++..+...... +..+..++..+..- ++.+.....++.+..+-+.. .-..|+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~leel~e~---leeie~eq~ei~e~l~~Lrk------~E~eAr 417 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIA---YSELQEELEEILKQ---LEEIEKEQEKLSEMLQGLRK------DELEAR 417 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 4445556666666666666655554332 33333333333332 22223323333322222211 113355
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 014582 142 EELCLAIDEEKRLQSLLLKSLLPKDDAD 169 (422)
Q Consensus 142 eEl~~l~~~l~~le~~l~~~llp~~~~D 169 (422)
..+..+...+..+...+...=+|.-|.+
T Consensus 418 ~kL~~~~~~L~~ikr~l~k~~lpgip~~ 445 (569)
T PRK04778 418 EKLERYRNKLHEIKRYLEKSNLPGLPED 445 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 5666667777777666666667765554
No 74
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=36.20 E-value=4.8e+02 Score=28.18 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcC
Q 014582 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG 180 (422)
.+..++.++++++..++.+|... .+.+..+...+.|.|.+.
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l-~~~~~~~~~~v~v~l~~~ 189 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNAL-LTGKSQRSHTVLVRLEAP 189 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-ccCCccceEEEEEEEecc
Confidence 45566777777888887776443 333444455666777653
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.12 E-value=2.9e+02 Score=30.41 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHH
Q 014582 61 LIKIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLI 110 (422)
Q Consensus 61 l~~~m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~ 110 (422)
.+..++++|+.++..|...+..+++-++ ..+-..++..+...|+..++.+
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999998887765 3445566677777788777776
No 76
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=36.05 E-value=1.5e+02 Score=25.68 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeeccCC-CCCceEE--EEEEeccc
Q 014582 191 VDVFKMYERYSQKKGWKFEVVGVTESD-LRGYKEA--SAAISGVG 232 (422)
Q Consensus 191 ~~L~~mY~~~a~~~g~~~~iv~~~~~~-~~G~k~a--~~~i~G~~ 232 (422)
..|+.-..++|...|.++.-+...+.. ..++... .+.++|.+
T Consensus 53 ~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y 97 (144)
T PF04350_consen 53 PSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSY 97 (144)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEH
T ss_pred HHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeH
Confidence 567778889999999988777655333 3455555 44555543
No 77
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.78 E-value=4.9e+02 Score=26.50 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 92 EYSKANKELRKLRDSMHLISELR-TKQKEIDGLKSLIYEC-SEDKDMLDMATEELCLAIDEEKRLQSL 157 (422)
Q Consensus 92 ~~~kl~Ke~~~L~~ive~~~~l~-~~~~dl~el~eLl~e~-~~D~em~e~a~eEl~~l~~~l~~le~~ 157 (422)
....+.+....+..++..+.+.. ....++..+++...+. ..|++-.+.++.++..+..++.....+
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443 3355555666655422 358888888888888888877744433
No 78
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.71 E-value=1.2e+02 Score=29.59 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEc
Q 014582 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179 (422)
Q Consensus 140 a~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~a 179 (422)
++.++..++.+++.++.++... .+..+...+-|.+.+
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l---~~~v~~sti~i~l~~ 203 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYL---DDRVDYSTITISLYE 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhceEEEEEEEEe
Confidence 4555556666666655544332 233344555555554
No 79
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=35.35 E-value=97 Score=32.44 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=57.9
Q ss_pred eeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeccccCCCC
Q 014582 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252 (422)
Q Consensus 173 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~ 252 (422)
-++.+.+|.||.-|.-|-.. |+.-.|- =+-..|..+| +|.+...- +++.. .++++-+.+.|.-
T Consensus 45 ~rv~~kgG~GG~G~ssf~~~-------~~~~~g~----PdGGdGG~GG--~V~~~a~~-~~~~~---l~~~~s~~~a~~G 107 (366)
T KOG1489|consen 45 RRVRIKGGSGGSGASSFFRG-------YRRPRGG----PDGGDGGNGG--HVYFVAKP-GAFKQ---LSHVGSLIQAPNG 107 (366)
T ss_pred eeEEeeccCCCCccchhhhh-------cccccCC----CCCCCCCCCc--eEEEEeCc-ccccc---cccCCceEEccCC
Confidence 36899999999988755322 1111111 0112233445 66666652 34444 4477777777764
Q ss_pred CCCCc--eeecceEEEEecCCCccc----------cccCCCCeEEEEeccCCCCC
Q 014582 253 EKSGR--VHTSAVSVAILPQADEVD----------VRLRNEDLRIDTYRSGGSGG 295 (422)
Q Consensus 253 ~~~gR--~hTS~a~V~V~P~~~~~~----------~~i~~~dl~i~~~RssGpGG 295 (422)
+..++ .|-+++...+++.+.... -+....+-++-..|+ |.||
T Consensus 108 e~~~s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arG-G~GG 161 (366)
T KOG1489|consen 108 ENGKSKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARG-GEGG 161 (366)
T ss_pred CcCccccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEeec-CCCC
Confidence 43333 355666655555442211 234566777888884 5677
No 80
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=35.26 E-value=3.5e+02 Score=24.59 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHhhcC--------------CCHHHHHHHHHHHHHHHHHH
Q 014582 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS---LIYECS--------------EDKDMLDMATEELCLAIDEE 151 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~e---Ll~e~~--------------~D~em~e~a~eEl~~l~~~l 151 (422)
|+.+..+.++-+++...+-.-++..++..++|.++.. |+.++. +-+.+.+++++.-+.+.+++
T Consensus 18 DQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i 97 (131)
T KOG1760|consen 18 DQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEI 97 (131)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555556666666665533 443210 01345566666666777777
Q ss_pred HHHHHHH
Q 014582 152 KRLQSLL 158 (422)
Q Consensus 152 ~~le~~l 158 (422)
+.++.++
T Consensus 98 ~~les~~ 104 (131)
T KOG1760|consen 98 EELESEL 104 (131)
T ss_pred HHHHHHH
Confidence 7776544
No 81
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.04 E-value=2.1e+02 Score=31.18 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=27.3
Q ss_pred HHHHHHhhcccccccccccccCCccccchhhhhhcccCCCCCCCccccCCCCchHHHH
Q 014582 6 WAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIK 63 (422)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 63 (422)
|+..++.|+....||+--|+.-+. ..+..++...--.|..+++....|..
T Consensus 15 ~~~~~~~g~~a~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~vV~~~Fdd 64 (475)
T PRK13729 15 WLGIVVVGAAAAIGGALYLSDVDM--------SGNGEAVAEQEPVPDMTGVVDTTFDD 64 (475)
T ss_pred HHHHHHHHHHHhhhceEEEecccc--------ccccccccccCCCCCccceecchhHH
Confidence 444467788888888866655443 11112222222345566666666654
No 82
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=34.98 E-value=2.1e+02 Score=26.99 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhcCCCC----CHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 69 VLAIERRSACLENLVNQPEA----SPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127 (422)
Q Consensus 69 le~l~~r~~eLe~~lsdP~~----d~~~-~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl 127 (422)
++.+++|+++||..+.-++- ++.. ...+.+-...|..+....++++...+.+.++...+
T Consensus 7 l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YL 70 (174)
T PF07426_consen 7 LDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNKYL 70 (174)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHc
Confidence 55677788888877743211 2322 23444445555666666777777777777777765
No 83
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=34.39 E-value=3e+02 Score=23.61 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH---HHHHHh
Q 014582 63 KIMEQRVLAIERRSACLENLVNQPEASPAEYSKAN---KELRKL 103 (422)
Q Consensus 63 ~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~---Ke~~~L 103 (422)
+.|..+++.+.++|.+|+..|....-++.++..+. .|+.++
T Consensus 25 k~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~~I~~eY~k~ 68 (101)
T PF07303_consen 25 KELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIAQILQEYNKK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 34567788888888888888765433444444333 444444
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.04 E-value=5.3e+02 Score=28.76 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHH
Q 014582 66 EQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMH 108 (422)
Q Consensus 66 ~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive 108 (422)
.++++.++.++++++..+.... +++.+.++.+++..+...+.
T Consensus 397 ~~~~~~~e~el~~l~~~l~~~~-~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 397 LKELRELEEELAEVDKKISTIP-SEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888887643 34566666666665555433
No 85
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.88 E-value=1.2e+02 Score=32.70 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014582 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
...++..++++.+.|...+.. .+++++....+..++..+. .+...+..++++...+.+++.++++++...+
T Consensus 46 ~~~~ldeln~~~n~l~k~i~~-~k~kkke~~~~l~~~~~~~--~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~ 116 (455)
T KOG2509|consen 46 TRFELDELNKEKNKLNKEIGD-LKLKKKEDIGQLEESKAKN--TEGAERKLLKEEAVELEEDESKLEDELYEVL 116 (455)
T ss_pred hhHHHHHHHHHHHHhhhHhhH-HHHhhcchhhHHHHhhhHh--hhhhhhhhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456777888888888888776 5555543333333444432 2335677888888888888888888887765
No 86
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=33.83 E-value=1.4e+02 Score=26.93 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeccCCCCCceEEEEEEe
Q 014582 180 GTGGEEASLFAVDVFKMYERYSQKKGW-KFEVVGVTESDLRGYKEASAAIS 229 (422)
Q Consensus 180 G~GG~Ea~~~a~~L~~mY~~~a~~~g~-~~~iv~~~~~~~~G~k~a~~~i~ 229 (422)
|.. +++..+...++..|..+.+.-|+ .+.+.....++.+++.+.+..|+
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e 167 (173)
T PF00587_consen 118 CTP-EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIE 167 (173)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEE
T ss_pred eCC-cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHH
Confidence 454 88999999999999999999999 99999998888777666555553
No 87
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=33.02 E-value=1.3e+02 Score=28.04 Aligned_cols=58 Identities=29% Similarity=0.418 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 014582 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144 (422)
Q Consensus 87 ~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl 144 (422)
+|.|+...+-.-++++|-+.-+.+..|+........+...+.+--.|++.++.+..|+
T Consensus 99 DF~Pd~Ia~qVp~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L~~el 156 (159)
T TIGR03358 99 DFSPDAVAKQVPELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKLLSEL 156 (159)
T ss_pred cCCHHHHHHHhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 4688887777777777777777777777777777777666654334666665555554
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.51 E-value=4.5e+02 Score=28.35 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014582 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS-ELRTKQKEIDGLKSLI 127 (422)
Q Consensus 62 ~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~-~l~~~~~dl~el~eLl 127 (422)
.+.+.++++.+...++.++..+.. ..++..++.+++++++.-+..++ ++.....++..+..-+
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~---~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIRE---QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 455558899999999999988866 56777888888888877655543 3444455555554444
No 89
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=32.23 E-value=84 Score=25.66 Aligned_cols=41 Identities=7% Similarity=0.094 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccc
Q 014582 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234 (422)
Q Consensus 194 ~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay 234 (422)
+.-....+.++||.++-++..+.+..++..+++.+.++.+.
T Consensus 17 L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i 57 (76)
T PRK11152 17 LERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPI 57 (76)
T ss_pred HHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchH
Confidence 33455677889999999999988888899999999765544
No 90
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=32.01 E-value=24 Score=31.61 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=34.4
Q ss_pred CCceeEeecCCCccccccccccccCccc----ccCc---cChHHHHHHHHHHHH
Q 014582 365 SERIRTYNFPQGRVTDHRVGITHHAISD----MMEG---ENLDIFIDALLLQQE 411 (422)
Q Consensus 365 sekIRtYnfpq~rVtDhR~g~~~~~l~~----vl~G---~~Ld~~i~~l~~~~~ 411 (422)
|++||--||+||-|+..-..+.+.+... +|.- ++|+-|.+.|-..-+
T Consensus 55 serireCN~~QN~v~sqg~EyQt~epseEPik~~r~WLkenLhvflEkLE~Evr 108 (135)
T PF15466_consen 55 SERIRECNYYQNPVASQGFEYQTKEPSEEPIKAIRNWLKENLHVFLEKLEKEVR 108 (135)
T ss_pred HhhhhhcCCcCCcccccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998877777665432 3322 478888888765444
No 91
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=31.75 E-value=3e+02 Score=29.92 Aligned_cols=60 Identities=25% Similarity=0.429 Sum_probs=40.7
Q ss_pred eeEEEEcCCCcH---------------HHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccce
Q 014582 173 CILEVRAGTGGE---------------EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237 (422)
Q Consensus 173 ~~leI~aG~GG~---------------Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~l 237 (422)
.=|.|++|.||. -=.+|-..+-+||.=|+-.- .+ .++|.+-|..-
T Consensus 241 ~sL~I~~G~~GarLtH~H~~Qy~yV~QSL~LW~~i~~~mf~LW~~ae-----------~D---------ll~~~~~Y~l~ 300 (458)
T PF09418_consen 241 YSLAIRYGRGGARLTHSHERQYHYVLQSLTLWREIMRDMFRLWYLAE-----------DD---------LLDGSNPYRLR 300 (458)
T ss_pred CCeeeecCCCCCCCCCchHhhHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HH---------hcCCCCceEee
Confidence 459999999995 23488889999999887621 11 01233345544
Q ss_pred eeecceeccccCCCC
Q 014582 238 KFESGIHRVQRVPLT 252 (422)
Q Consensus 238 k~E~GvHRvqRvp~~ 252 (422)
-.=-|.||||.-|..
T Consensus 301 ~TGQGl~Rvq~~p~~ 315 (458)
T PF09418_consen 301 NTGQGLNRVQQCPKV 315 (458)
T ss_pred eCCCcHHhhccCChH
Confidence 455799999988853
No 92
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.51 E-value=4.8e+02 Score=25.08 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 014582 89 SPAEYSKANKELRKLRDSMHLISEL-RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDD 167 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~ive~~~~l-~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~llp~~~ 167 (422)
+.++.+.+--++..|...+.....- .....+|.+|..++.- +.+.+++++|.+.+...++.|...
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~--------eemQe~i~~L~kev~~~~erl~~~------ 142 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT--------EEMQEEIQELKKEVAGYRERLKNI------ 142 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred CcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHH
Q 014582 168 ADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQ 202 (422)
Q Consensus 168 ~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~ 202 (422)
+..+=+|+|--- ....+||.++|.
T Consensus 143 ---k~g~~~vtpedk--------~~v~~~y~~~~~ 166 (201)
T KOG4603|consen 143 ---KAGTNHVTPEDK--------EQVYREYQKYCK 166 (201)
T ss_pred ---HHhcccCCHHHH--------HHHHHHHHHHHH
No 93
>PRK02224 chromosome segregation protein; Provisional
Probab=31.28 E-value=6.2e+02 Score=28.97 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014582 60 DLIKIMEQRVLAIERRSACLENLVN 84 (422)
Q Consensus 60 ~l~~~m~~kle~l~~r~~eLe~~ls 84 (422)
.++.-+..+++.+..+.++|+..+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~ 492 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVE 492 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555443
No 94
>PRK09039 hypothetical protein; Validated
Probab=31.26 E-value=5e+02 Score=26.88 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 137 LDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
...+..++..|+.++..++..|..
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777765543
No 95
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.05 E-value=2.2e+02 Score=24.00 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=39.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014582 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS 161 (422)
Q Consensus 97 ~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~ 161 (422)
.+|+..+++.+ .+...+++.+..=+...+-.+|=++.++.|...+.+.+...|++|...
T Consensus 4 ~~eId~lEekl------~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 4 AKEIDGLEEKL------AQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHhhHHHHH------HHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 44555555443 333445555544444334467778889999999999999999888765
No 96
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=31.01 E-value=2.9e+02 Score=22.44 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHH
Q 014582 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSM 107 (422)
Q Consensus 71 ~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~iv 107 (422)
.+.....++...|..|.+|+++...+.+++..+..-+
T Consensus 67 ~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l 103 (125)
T PF13801_consen 67 ELRAARQELRALLAAPPPDEAAIEALLEEIREAQAEL 103 (125)
T ss_dssp HHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555677888999999999998888888887776643
No 97
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=30.68 E-value=5.1e+02 Score=29.44 Aligned_cols=76 Identities=4% Similarity=0.034 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH
Q 014582 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136 (422)
Q Consensus 57 ~~~~l~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em 136 (422)
-++.+.+.+.+-+...++.++.|...-..|.+ ..++..++++......+......+..-.+|+++
T Consensus 24 ~~e~~~~a~~~~~~~~~~~i~~i~~~~~~~t~---------------~n~i~~ld~~~~~l~~~~~~~~~l~~v~~~~~~ 88 (681)
T PRK10280 24 ADHHYRPAFDEGVRQKRAEIAAIALNPQAPDF---------------NNTILALEQSGELLTRVTSVFFAMTAAHTNDEL 88 (681)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 46778888888887777777777542222222 233334444444444444444444433467777
Q ss_pred HHHHHHHHHHH
Q 014582 137 LDMATEELCLA 147 (422)
Q Consensus 137 ~e~a~eEl~~l 147 (422)
++.+.+-...+
T Consensus 89 r~a~~~~~~~l 99 (681)
T PRK10280 89 QRLDEQFSAEL 99 (681)
T ss_pred HHHHHHHHHHH
Confidence 77655444443
No 98
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.51 E-value=4.2e+02 Score=24.13 Aligned_cols=64 Identities=27% Similarity=0.427 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEID-GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~-el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
++++...+..++..|+.-+...+. ..+.+. ++..|.+. -.+++| ...+..++.++..++.+|..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~---~~k~l~~eL~~L~~~-~t~~el----~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKK---EVKSLEAELASLSSE-PTNEEL----REEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC-CCHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 677788888887777665544433 333332 33334332 233443 44556666666666665544
No 99
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=30.33 E-value=3.4e+02 Score=24.23 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 108 HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 108 e~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
+.++.|.....|-.+-.+-+.+..+||+++..+..-...-..-+.+|...+..
T Consensus 3 ~~Ln~Lie~~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~ 55 (139)
T TIGR02284 3 HSLNDLIEISIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVAS 55 (139)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333578999888887777777777777765544
No 100
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=29.97 E-value=5.7e+02 Score=26.99 Aligned_cols=26 Identities=8% Similarity=-0.189 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q 014582 332 LKVLCAKLYEMERSRIHLSRSKLRSE 357 (422)
Q Consensus 332 ~~~L~~~L~~~~~~~~~~~~~~~r~~ 357 (422)
.+.-..+|...-.+...++..+.+..
T Consensus 282 k~~A~~~L~~kL~~~~~~~~~~~~~~ 307 (367)
T PRK00578 282 KASAMKMLKAKLYELELEKRAAEKDA 307 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566665555555555544443
No 101
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.55 E-value=7.8e+02 Score=30.36 Aligned_cols=44 Identities=16% Similarity=0.365 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHH
Q 014582 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLI 110 (422)
Q Consensus 67 ~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~ 110 (422)
.++..+++++.++...+++|+++.+...++.+....|++.+...
T Consensus 1201 s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~ 1244 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQAL 1244 (1758)
T ss_pred hHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888999999999987777777777777777655433
No 102
>PF15605 Toxin_52: Putative toxin 52
Probab=29.38 E-value=3.6e+02 Score=23.60 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 014582 60 DLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS 111 (422)
Q Consensus 60 ~l~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~ 111 (422)
+=++-|.+-...+......|+..+.||..+.....-+..++.+-...++.++
T Consensus 47 dHlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE 98 (103)
T PF15605_consen 47 DHLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIE 98 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999866655555655555544444443
No 103
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=29.28 E-value=3.1e+02 Score=28.61 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcC--CeEEEEeeccCC-CCCceEEEEEEeccc------cccceeeecceeccccCCCCCCC
Q 014582 185 EASLFAVDVFKMYERYSQKKG--WKFEVVGVTESD-LRGYKEASAAISGVG------VYGKLKFESGIHRVQRVPLTEKS 255 (422)
Q Consensus 185 Ea~~~a~~L~~mY~~~a~~~g--~~~~iv~~~~~~-~~G~k~a~~~i~G~~------ay~~lk~E~GvHRvqRvp~~~~~ 255 (422)
.|..++..+-++..+|....+ ++|++-+--.+. ..|-.. +.|.-.. +-+.+.+|.|||= .|.-+
T Consensus 110 ~a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~~~--l~I~~~~~fs~~~l~~L~~HEigvH~-----lt~~N 182 (349)
T PF08014_consen 110 DAEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSGDR--LKINKNAMFSERDLEALLHHEIGVHL-----LTTLN 182 (349)
T ss_pred CHHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccCCe--eEEcCCCCcCHHHHHHHHHHhhhhhh-----ccccc
Confidence 355566777777888877664 444444322222 122222 5554332 4588999999994 34556
Q ss_pred Cceee
Q 014582 256 GRVHT 260 (422)
Q Consensus 256 gR~hT 260 (422)
|+.|.
T Consensus 183 g~~QP 187 (349)
T PF08014_consen 183 GRAQP 187 (349)
T ss_pred cccCC
Confidence 66666
No 104
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.83 E-value=2.7e+02 Score=27.20 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC---C-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 014582 67 QRVLAIERRSACLENLVNQPEA---S-PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATE 142 (422)
Q Consensus 67 ~kle~l~~r~~eLe~~lsdP~~---d-~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~e 142 (422)
.+++.....+..+-.. .+-.. | ..++..+..++..++...+.+.++..+.+.++++.++-. -....+.
T Consensus 105 ~~~~~~l~~l~~~g~v-~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~-------~L~~v~~ 176 (262)
T PF14257_consen 105 DKFDSFLDELSELGKV-TSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIER-------ELSRVRS 176 (262)
T ss_pred HHHHHHHHHHhccCce-eeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-------HHHHHHH
Confidence 4555555555555422 22222 2 457888888999999999888888887777777666632 2356788
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 014582 143 ELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 143 El~~l~~~l~~le~~l~~~l 162 (422)
||+.++.++..|.+.+...-
T Consensus 177 eIe~~~~~~~~l~~~v~~st 196 (262)
T PF14257_consen 177 EIEQLEGQLKYLDDRVDYST 196 (262)
T ss_pred HHHHHHHHHHHHHHhhceEE
Confidence 99999999999998876654
No 105
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=28.73 E-value=1.4e+02 Score=25.05 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=30.9
Q ss_pred HHHHHHHcCCeEEEEeeccCCCCCceEEEEEEe-ccc
Q 014582 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAIS-GVG 232 (422)
Q Consensus 197 Y~~~a~~~g~~~~iv~~~~~~~~G~k~a~~~i~-G~~ 232 (422)
....+.++||+++-+...+++..|+...++.+. |+.
T Consensus 19 it~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~ 55 (84)
T PRK13562 19 ITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD 55 (84)
T ss_pred HHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH
Confidence 445567799999999999999999999999997 754
No 106
>PLN02742 Probable galacturonosyltransferase
Probab=28.36 E-value=8.1e+02 Score=27.31 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=11.6
Q ss_pred cccCCCCchH-HHHHHHHHH
Q 014582 51 SYSTEMLSND-LIKIMEQRV 69 (422)
Q Consensus 51 ~~~~~~~~~~-l~~~m~~kl 69 (422)
+++.+|+|++ +++.|.+.|
T Consensus 64 ~~~~~~~~~~~~~~~l~dql 83 (534)
T PLN02742 64 NFTEEMLSATSFSRQLADQI 83 (534)
T ss_pred cchhhhcChHHHHHHHHHHH
Confidence 3466777665 666665554
No 107
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=28.13 E-value=3.8e+02 Score=24.44 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCc
Q 014582 104 RDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183 (422)
Q Consensus 104 ~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG 183 (422)
+..++.+..|..+.+++..- ..| ...+|-.++...+..+.+.+-.+-...+| .|+. . =
T Consensus 35 rk~~e~~~kykkk~e~l~k~-------~id-~~~EmS~e~~~aLe~~~re~L~ea~~~~l-~de~-t------------f 92 (140)
T PF10666_consen 35 RKWIEADEKYKKKAEKLNKY-------NID-FDREMSSEEYRALEEQQREALKEAIEIFL-GDEN-T------------F 92 (140)
T ss_pred HHHHHHHHHHHHHHHHhhhh-------ccc-chhhcCHHHHHHHHHHHHHHHHHHHHHHh-CcHh-H------------H
Confidence 34556666676655554321 111 22455667778888888777666656665 2221 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Q 014582 184 EEASLFAVDVFKMYERYSQKKGW 206 (422)
Q Consensus 184 ~Ea~~~a~~L~~mY~~~a~~~g~ 206 (422)
.||--.|.+|++||.-|-+--.|
T Consensus 93 ee~Ye~~k~~~~M~~v~~~v~e~ 115 (140)
T PF10666_consen 93 EECYEKCKDLVNMTKVYMQVSEW 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777799999999987664433
No 108
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=28.12 E-value=5e+02 Score=31.22 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHhHHH
Q 014582 89 SPAEYSKANKELRKLRDS 106 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~i 106 (422)
...+|..+..++..+...
T Consensus 211 ~a~~y~~l~~e~~~~~~~ 228 (1163)
T COG1196 211 KAERYQELKAELRELELA 228 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666555544
No 109
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=27.76 E-value=4e+02 Score=30.87 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 014582 149 DEEKRLQSLLLKSL 162 (422)
Q Consensus 149 ~~l~~le~~l~~~l 162 (422)
++++.|++++...|
T Consensus 695 ~kieal~~qik~~~ 708 (762)
T PLN03229 695 EKIEALEQQIKQKI 708 (762)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444544444443
No 110
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.75 E-value=5.5e+02 Score=25.75 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHhhcCC-------CHHHHHHHHH
Q 014582 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQK-EIDGLKSLIYECSE-------DKDMLDMATE 142 (422)
Q Consensus 71 ~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~-dl~el~eLl~e~~~-------D~em~e~a~e 142 (422)
.|.+-.++|-...--|++ .+++..+..+|..|...++.|+.-...++ .|+.+..-..+.+. .++......+
T Consensus 161 vLL~~ae~L~~vYP~~ga-~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de 239 (259)
T PF08657_consen 161 VLLRGAEKLCNVYPLPGA-REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDE 239 (259)
T ss_pred HHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHH
Confidence 333444445444444443 67888889999999888888776654333 22222111111100 1122234555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014582 143 ELCLAIDEEKRLQSLLL 159 (422)
Q Consensus 143 El~~l~~~l~~le~~l~ 159 (422)
.|..-++++++||.++.
T Consensus 240 ~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 240 DIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666777776554
No 111
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=27.32 E-value=1.6e+02 Score=35.31 Aligned_cols=102 Identities=11% Similarity=0.185 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHH--------HHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHH
Q 014582 61 LIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYS--------KANKELRKLRDS----MHLISELRTKQKEIDGLKSLI 127 (422)
Q Consensus 61 l~~~m~~kle~l~~r~~eLe~~lsdP~~-d~~~~~--------kl~Ke~~~L~~i----ve~~~~l~~~~~dl~el~eLl 127 (422)
+-+-+..++.++++.++-|+..+.-|-+ |+++.+ .+.|++..|+.+ ++.++++....+.+++-..++
T Consensus 1064 Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklL 1143 (1439)
T PF12252_consen 1064 ISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLL 1143 (1439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444557888888889999988888977 665432 345556666554 566666666666666555555
Q ss_pred hhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 014582 128 YEC----SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164 (422)
Q Consensus 128 ~e~----~~D~em~e~a~eEl~~l~~~l~~le~~l~~~llp 164 (422)
..+ ..+.+-.+ -.+++.|++++..+..+|...+++
T Consensus 1144 RnEK~Rmh~~~dkVD--FSDIEkLE~qLq~~~~kL~dAyl~ 1182 (1439)
T PF12252_consen 1144 RNEKIRMHSGTDKVD--FSDIEKLEKQLQVIHTKLYDAYLV 1182 (1439)
T ss_pred HhHHHhhccCCCccc--HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 321 01111112 256778888888887777666653
No 112
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=27.19 E-value=5e+02 Score=24.43 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHH
Q 014582 60 DLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSM 107 (422)
Q Consensus 60 ~l~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~iv 107 (422)
+|...=++|=..--+..+.|...+.+|+.+++.-.+...++..|....
T Consensus 87 ~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~ 134 (196)
T PF12685_consen 87 YFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKM 134 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 466554555555666778888999999998887777777766666554
No 113
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.68 E-value=5.5e+02 Score=28.66 Aligned_cols=64 Identities=25% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014582 92 EYSKANKELRKLRDSMH-LISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS 161 (422)
Q Consensus 92 ~~~kl~Ke~~~L~~ive-~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~l~~~l~~le~~l~~~ 161 (422)
+-+++.+++++.++-.. .+.+....+.|++....++.. -++...+|-++|...+..|+.+|-..
T Consensus 393 E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qk------EKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 393 ERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQK------EKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666555431 233333333333333333332 13455667777777788887666544
No 114
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=26.48 E-value=3.1e+02 Score=21.24 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 014582 64 IMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141 (422)
Q Consensus 64 ~m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~ 141 (422)
-....++.+...+...+..+..+.. |+.......+++..+..-+.. .....+.+.+.-+-+.. ..+.-...+.
T Consensus 5 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~---~~~~l~~l~~~~~~L~~--~~~~~~~~i~ 79 (105)
T PF00435_consen 5 QFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIES---RQERLESLNEQAQQLID--SGPEDSDEIQ 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--TTHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHH--cCCCcHHHHH
Confidence 3456777888888899999876654 777777777777766665544 34444444444333321 1233334555
Q ss_pred HHHHHHHHHHHHHHH
Q 014582 142 EELCLAIDEEKRLQS 156 (422)
Q Consensus 142 eEl~~l~~~l~~le~ 156 (422)
..+..+......+..
T Consensus 80 ~~~~~l~~~w~~l~~ 94 (105)
T PF00435_consen 80 EKLEELNQRWEALCE 94 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666655555544
No 115
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.30 E-value=5.1e+02 Score=23.74 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 014582 64 IMEQRVLAIERRSACLENLVNQ 85 (422)
Q Consensus 64 ~m~~kle~l~~r~~eLe~~lsd 85 (422)
.+.++++.+.++..+++..+.+
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~ 113 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEK 113 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544444
No 116
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=26.26 E-value=8.4e+02 Score=28.26 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=23.7
Q ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCC
Q 014582 133 DKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPK 165 (422)
Q Consensus 133 D~em~e~a---~eEl~~l~~~l~~le~~l~~~llp~ 165 (422)
|.+|.... .+-+..+.+.+...-.+|+..|+|.
T Consensus 1020 ~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~ 1055 (1179)
T TIGR02168 1020 EEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGG 1055 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56666666 7777777777888777788777653
No 117
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=26.21 E-value=1.5e+02 Score=23.02 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=23.0
Q ss_pred HcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeccc
Q 014582 203 KKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247 (422)
Q Consensus 203 ~~g~~~~iv~~~~~~~~G~k~a~~~i~G~~ay~~lk~E~GvHRvq 247 (422)
+.|+++.++|.... .+|. ..+..+.| ..++.|.|.+.
T Consensus 17 ~~g~~v~v~E~~~~-~GG~-~~~~~~~g------~~~d~g~~~~~ 53 (68)
T PF13450_consen 17 KAGYRVTVFEKNDR-LGGR-ARSFRIPG------YRFDLGAHYFF 53 (68)
T ss_dssp HTTSEEEEEESSSS-SSGG-GCEEEETT------EEEETSS-SEE
T ss_pred HCCCcEEEEecCcc-cCcc-eeEEEECC------EEEeeccEEEe
Confidence 35999999997744 4552 22333333 68889998764
No 118
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.04 E-value=4.1e+02 Score=22.21 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhC
Q 014582 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK-SLIYECSEDKDMLD---MATEELCLAIDEEKRLQSLLLKSLL 163 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~-eLl~e~~~D~em~e---~a~eEl~~l~~~l~~le~~l~~~ll 163 (422)
+.++...+..++..+...++. ++...+.+..-. .+....++-.++++ .+..++..++.++..++.++...++
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~---lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEE---LRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667776666665555444 444444444222 22222122344433 3457888888888888888877763
No 119
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=24.98 E-value=1e+02 Score=28.45 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=29.6
Q ss_pred EEeccCCCCCccccccCceEEEEEeCCeeEEEEcCcC
Q 014582 286 DTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER 322 (422)
Q Consensus 286 ~~~RssGpGGQ~VNkt~saVrltH~PtGi~v~~~~~R 322 (422)
+..-..|.++..+-..+|.|||.|..||..+.++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~ 158 (190)
T PF02815_consen 122 EEKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVK 158 (190)
T ss_dssp EEEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEE
T ss_pred EecccCCccCCcEEecccEEEEEECCcCEEEecCCcc
Confidence 3344557778888888999999999999988887654
No 120
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.94 E-value=4.2e+02 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 014582 141 TEELCLAIDEEKRLQ 155 (422)
Q Consensus 141 ~eEl~~l~~~l~~le 155 (422)
+.|++.++++.+.++
T Consensus 174 ~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 174 EKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 121
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.82 E-value=4.2e+02 Score=26.07 Aligned_cols=13 Identities=8% Similarity=-0.355 Sum_probs=6.1
Q ss_pred HHhhccccccccc
Q 014582 10 LHLGALRQLESSS 22 (422)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (422)
.++-+|-+-||-.
T Consensus 21 rll~~ge~~~~dr 33 (222)
T KOG3215|consen 21 RLLIDGEGDGGDR 33 (222)
T ss_pred HHhhcCCCCCCcH
Confidence 3444555555543
No 122
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.60 E-value=1.2e+03 Score=28.61 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=13.7
Q ss_pred eeEeecCCCcccccccc---ccccCcccccCc
Q 014582 368 IRTYNFPQGRVTDHRVG---ITHHAISDMMEG 396 (422)
Q Consensus 368 IRtYnfpq~rVtDhR~g---~~~~~l~~vl~G 396 (422)
+..|+.--..-+|||-- +.--.++.||+|
T Consensus 1112 v~~l~~~t~kr~~~re~l~~Lrk~RldEFm~g 1143 (1293)
T KOG0996|consen 1112 VAELEKFTQKRDEHREKLEELRKRRLDEFMAG 1143 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444322334555543 233456666666
No 123
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.46 E-value=4.8e+02 Score=28.97 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=15.2
Q ss_pred CCCccccccccccccCcccccCc
Q 014582 374 PQGRVTDHRVGITHHAISDMMEG 396 (422)
Q Consensus 374 pq~rVtDhR~g~~~~~l~~vl~G 396 (422)
-.+.++|...+++ .||+..|..
T Consensus 495 ~~G~~~~p~l~i~-SdLd~ql~~ 516 (555)
T TIGR03545 495 IKGILEDPNLKIN-SNLDKLLAK 516 (555)
T ss_pred eccccCCCceeee-cCHHHHHHH
Confidence 4567888888877 466666654
No 124
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.81 E-value=7.6e+02 Score=24.91 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Q 014582 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISE 112 (422)
Q Consensus 62 ~~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive~~~~ 112 (422)
+.....-++.+.++.+.+|..+-..... ....++..|++.+-.++.
T Consensus 149 ~d~~~~~le~i~~~~~~ie~~l~~~~~~-----~~l~~l~~l~~~l~~lr~ 194 (322)
T COG0598 149 VDNYFPVLEQIEDELEAIEDQLLASTTN-----EELERLGELRRSLVYLRR 194 (322)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHHH
Confidence 3333456778888999998776654332 334444444444443333
No 125
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=23.64 E-value=65 Score=32.41 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.1
Q ss_pred CCCceeecceEEEEecCC
Q 014582 254 KSGRVHTSAVSVAILPQA 271 (422)
Q Consensus 254 ~~gR~hTS~a~V~V~P~~ 271 (422)
..||+.+|.|.|.|.|-.
T Consensus 153 ~~g~rK~a~A~V~v~~Gt 170 (275)
T KOG1697|consen 153 AVGRRKCARATVKVQPGT 170 (275)
T ss_pred eccceecceeEEEEecCc
Confidence 457888999999996653
No 126
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=1.7e+02 Score=27.69 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 014582 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (422)
Q Consensus 87 ~~d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~ 145 (422)
+|+|+...+-.-++++|-+.-+.+..|+........+.+++.+--.|+++++.+..|+.
T Consensus 104 DFsP~~Va~qVp~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L~~e~~ 162 (169)
T COG3516 104 DFSPDAVARQVPELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKLASELK 162 (169)
T ss_pred cCCHHHHHHhhHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence 57887776666666666666666666666666666666665443345666555544443
No 127
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=23.54 E-value=4.2e+02 Score=32.54 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014582 139 MATEELCLAIDEEKRLQSLL 158 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l 158 (422)
.+++++..++.++..++.++
T Consensus 301 ~~~~~~~~le~~~~~l~~~~ 320 (1353)
T TIGR02680 301 ELDARTEALEREADALRTRL 320 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.36 E-value=4.9e+02 Score=26.92 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 014582 113 LRTKQKEIDGLKSLI 127 (422)
Q Consensus 113 l~~~~~dl~el~eLl 127 (422)
++...-|-+++...+
T Consensus 250 ~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 250 CKQLAAENEELQQHL 264 (306)
T ss_pred HHHHhhhHHHHHHHH
Confidence 333333444444443
No 129
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=23.35 E-value=9.9e+02 Score=26.07 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=8.3
Q ss_pred cCCCcHHHHH
Q 014582 179 AGTGGEEASL 188 (422)
Q Consensus 179 aG~GG~Ea~~ 188 (422)
+..||++|.-
T Consensus 241 ~~~~gD~a~~ 250 (552)
T KOG2129|consen 241 PDVHGDEAAA 250 (552)
T ss_pred ccccCchHHH
Confidence 8899999873
No 130
>PRK11637 AmiB activator; Provisional
Probab=23.24 E-value=8.8e+02 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 014582 65 MEQRVLAIERRSACLENLVNQ 85 (422)
Q Consensus 65 m~~kle~l~~r~~eLe~~lsd 85 (422)
..++++.++++++++++.+.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665543
No 131
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=23.21 E-value=6.2e+02 Score=24.34 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 014582 139 MATEELCLAIDEEKRLQSLLLKSLL 163 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~ll 163 (422)
.+.+|+..|+. +.++.++...|+
T Consensus 165 ELe~ELe~Le~--e~l~~~ll~~~~ 187 (191)
T PTZ00446 165 EIDKELDLLKE--QTMEEKLLKELI 187 (191)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHh
Confidence 44566666655 566666666654
No 132
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.88 E-value=1e+03 Score=29.78 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 014582 192 DVFKMYERYSQ 202 (422)
Q Consensus 192 ~L~~mY~~~a~ 202 (422)
+|-.|+..|..
T Consensus 439 eLe~~LenF~a 449 (1486)
T PRK04863 439 NAEDWLEEFQA 449 (1486)
T ss_pred HHHHHHHHHHH
Confidence 44445555544
No 133
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=22.58 E-value=4e+02 Score=28.06 Aligned_cols=27 Identities=7% Similarity=-0.103 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014582 327 NKAKALKVLCAKLYEMERSRIHLSRSK 353 (422)
Q Consensus 327 Nk~~A~~~L~~~L~~~~~~~~~~~~~~ 353 (422)
--..-..+|..+=.+...++....+++
T Consensus 273 AmkvL~ARl~~~~~~~~~~~~~~~Rks 299 (363)
T COG0216 273 AMKVLRARLYDAERQKAQAEEASERKS 299 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666555555555555553
No 134
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.50 E-value=4.3e+02 Score=21.53 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 135 DMLDMATEELCLAIDEEKRLQSLL 158 (422)
Q Consensus 135 em~e~a~eEl~~l~~~l~~le~~l 158 (422)
++.+.+++.+..+..+++.++..+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665544
No 135
>PRK06034 hypothetical protein; Provisional
Probab=22.41 E-value=4e+02 Score=27.08 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=41.4
Q ss_pred ceEEEEEE-ecccc-ccceeeecceeccccCCCCCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCC
Q 014582 221 YKEASAAI-SGVGV-YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294 (422)
Q Consensus 221 ~k~a~~~i-~G~~a-y~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpG 294 (422)
..-.++-| .+..+ +..|..|.+.+=+.|.|..+..++.----+-|.--|..+....++-+-+++++...+.+|+
T Consensus 140 adyGVVPI~~~~~~WW~~L~~~~~~~iiarlP~~~~~~~pa~~p~~v~~~~~~~~~~~ev~~~~~~~~~w~~~~~~ 215 (279)
T PRK06034 140 GDLGLVSLTSSDTPWWGRLEAEGAPKIIARLPFVERADHPAALPVFVVSRPADDAAVTEVETWSVRVSGWVADAAR 215 (279)
T ss_pred CCEEEEECCCCCCcHHHHhccCCCCeEEEeCCCCCCCCCCCCCceeeeecccccccccceeeeecccccccccccc
Confidence 33455555 33333 3556667777777999999988877442333332333333344555556666555544444
No 136
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.82 E-value=8.2e+02 Score=24.54 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhHHH
Q 014582 61 LIKIMEQRVLAIERRSACLENLVNQPE-ASPAEYSKANKELRKLRDS 106 (422)
Q Consensus 61 l~~~m~~kle~l~~r~~eLe~~lsdP~-~d~~~~~kl~Ke~~~L~~i 106 (422)
++......++.+.++.+++|..+-++. ...++...+.+++..|+..
T Consensus 151 ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~ 197 (324)
T PRK09546 151 LTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRY 197 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 444445677788889999998775432 1223444444444444443
No 137
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.72 E-value=1e+03 Score=25.70 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCC--HHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Q 014582 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS-LIYECSED--KDMLD---MATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~e-Ll~e~~~D--~em~e---~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
+-+++.++-++..++..-++.++..++ .+..... .... .++ .++++ .+.++++.++.++++++.++...+
T Consensus 27 ~~~~~~~ld~~~r~~~~~~e~l~~~rn---~~sk~ig~~~~~-~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 27 DVDKLLELDEERRKLLRELEELQAERN---ELSKEIGRALKR-GEDDAEELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455666666666666555554444333 3322221 1111 122 33332 244566667777777777775544
No 138
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.55 E-value=6e+02 Score=27.89 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHH
Q 014582 89 SPAEYSKANKELRKLRDSMHLIS 111 (422)
Q Consensus 89 d~~~~~kl~Ke~~~L~~ive~~~ 111 (422)
+..+..+++|+.+.|+.+.+..+
T Consensus 204 ee~k~eKiskR~~aleev~n~vk 226 (594)
T KOG1086|consen 204 EEHKLEKISKRVKALEEVNNNVK 226 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665554443
No 139
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.55 E-value=1.3e+03 Score=28.01 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=36.2
Q ss_pred CCCchHHHHHHHH----------------HHHHHHHHHHHHHHHhcC---CCC--------CHHHHHHHHHHHHHhHHHH
Q 014582 55 EMLSNDLIKIMEQ----------------RVLAIERRSACLENLVNQ---PEA--------SPAEYSKANKELRKLRDSM 107 (422)
Q Consensus 55 ~~~~~~l~~~m~~----------------kle~l~~r~~eLe~~lsd---P~~--------d~~~~~kl~Ke~~~L~~iv 107 (422)
-|-|+.++..+++ -++..+.+++|+..++.. |.. .--+++++.+++-.|.++.
T Consensus 155 NMKp~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ 234 (1174)
T KOG0933|consen 155 NMKPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRIC 234 (1174)
T ss_pred cCCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777765543 345556667777666653 322 1125667777777888887
Q ss_pred HHHHHHH
Q 014582 108 HLISELR 114 (422)
Q Consensus 108 e~~~~l~ 114 (422)
.+|+=|+
T Consensus 235 ia~eY~~ 241 (1174)
T KOG0933|consen 235 IAYEYLQ 241 (1174)
T ss_pred HHHHHHH
Confidence 7776443
No 140
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.53 E-value=9.2e+02 Score=25.02 Aligned_cols=24 Identities=21% Similarity=0.190 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 137 LDMATEELCLAIDEEKRLQSLLLK 160 (422)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le~~l~~ 160 (422)
..-+-..+..+..+-..|+.+|..
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333333344444444445554443
No 141
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=21.28 E-value=7e+02 Score=23.54 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014582 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSL 162 (422)
Q Consensus 133 D~em~e~a~eEl~~l~~~l~~le~~l~~~l 162 (422)
|+.=..-|++++....+..+.+-..|...|
T Consensus 147 d~~kl~kae~~l~~a~~~y~~lN~~Lk~eL 176 (216)
T cd07599 147 DEKQLAKLERKLEEAKEEYEALNELLKSEL 176 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445566777777777777777666655
No 142
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=21.25 E-value=1.3e+03 Score=26.78 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCCccc--ceeEEEEc-C---------CCcHHHHHHHHHHHHHH
Q 014582 133 DKDMLDMATEELCLAIDEEKRLQSLLLK---SLLPKDDADER--DCILEVRA-G---------TGGEEASLFAVDVFKMY 197 (422)
Q Consensus 133 D~em~e~a~eEl~~l~~~l~~le~~l~~---~llp~~~~D~~--~~~leI~a-G---------~GG~Ea~~~a~~L~~mY 197 (422)
|..+++...+-+..+...+..+-..|.. .|...+|.|.. +.-+.+.| | +||.-+....+.+|-.+
T Consensus 1013 ~~~~~~~f~~~f~~~~~~f~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~ 1092 (1164)
T TIGR02169 1013 EKKKREVFMEAFEAINENFNEIFAELSGGTGELILENPDDPFAGGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQ 1092 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCCCCcccCCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHH
Confidence 3455555555555556655555443320 12122333322 33344443 2 67777776666665443
Q ss_pred HHHHHHcCCeEEEEeec
Q 014582 198 ERYSQKKGWKFEVVGVT 214 (422)
Q Consensus 198 ~~~a~~~g~~~~iv~~~ 214 (422)
..+...+-++|..
T Consensus 1093 ----~~~~~~~~~lDE~ 1105 (1164)
T TIGR02169 1093 ----RYKPSPFYAFDEV 1105 (1164)
T ss_pred ----hcCCCCcEEeccc
Confidence 1245566666643
No 143
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=20.96 E-value=1.2e+03 Score=26.13 Aligned_cols=32 Identities=22% Similarity=0.091 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 014582 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADE 170 (422)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~llp~~~~D~ 170 (422)
.|++.+..+..++......+..+=||.=|.+-
T Consensus 414 ~Are~l~~~~~~l~eikR~mek~nLPGlPe~~ 445 (570)
T COG4477 414 EARENLERLKSKLHEIKRYMEKSNLPGLPETF 445 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 46777888888888888777788788777653
No 144
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=20.92 E-value=1.4e+03 Score=29.51 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHHHHH
Q 014582 63 KIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMH 108 (422)
Q Consensus 63 ~~m~~kle~l~~r~~eLe~~lsdP~~d~~~~~kl~Ke~~~L~~ive 108 (422)
..|..-.+..+.|+.+|.....|+ |+..|.++..++.+|+.-..
T Consensus 1281 ~~l~~e~~~wK~R~q~L~~k~k~~--d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1281 KKLEEENDRWKQRNQDLLEKYKDS--DKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHH
Confidence 344555566777888888877776 47778888888877776544
No 145
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=20.84 E-value=8e+02 Score=25.88 Aligned_cols=30 Identities=7% Similarity=-0.168 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 014582 328 KAKALKVLCAKLYEMERSRIHLSRSKLRSE 357 (422)
Q Consensus 328 k~~A~~~L~~~L~~~~~~~~~~~~~~~r~~ 357 (422)
.-.-.++-..+|...-.+...++..+.+..
T Consensus 278 Q~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~ 307 (364)
T TIGR00020 278 QHKNKDSAMKVLKAKLYELEMEKEQAEKDA 307 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666555555555544433
No 146
>smart00150 SPEC Spectrin repeats.
Probab=20.73 E-value=4e+02 Score=20.52 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHH
Q 014582 67 QRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLIS 111 (422)
Q Consensus 67 ~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~ 111 (422)
..++.+...+.+.+..+.++.+ |+..+..+.+++..+..-++..+
T Consensus 5 ~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~ 51 (101)
T smart00150 5 RDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHE 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566677777777777766655 88888888888887777665443
No 147
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.52 E-value=9.3e+02 Score=24.69 Aligned_cols=67 Identities=27% Similarity=0.198 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014582 92 EYSKANKELRKLRDSMHLISEL-RTKQKEIDGLKSLIYE-CSEDKDMLDMATEELCLAIDEEKRLQSLL 158 (422)
Q Consensus 92 ~~~kl~Ke~~~L~~ive~~~~l-~~~~~dl~el~eLl~e-~~~D~em~e~a~eEl~~l~~~l~~le~~l 158 (422)
....+.+....+.+++..+.+. .....++..+.+...+ +.-|++....+++++.....++.....++
T Consensus 159 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 159 DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666655444333 2333344444444332 12478888888887777766665544433
No 148
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.31 E-value=1.4e+03 Score=26.51 Aligned_cols=19 Identities=21% Similarity=0.044 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014582 326 MNKAKALKVLCAKLYEMER 344 (422)
Q Consensus 326 ~Nk~~A~~~L~~~L~~~~~ 344 (422)
.+.+.|+..|..-|.++..
T Consensus 701 ~~~~eA~~~l~~~ld~a~~ 719 (771)
T TIGR01069 701 QRSEEALDRLEKFLNDALL 719 (771)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3467888888888777553
No 149
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.16 E-value=8.3e+02 Score=29.91 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHhHHH
Q 014582 61 LIKIMEQRVLAIERRSACLENLVNQPEA----SPAEYSKANKELRKLRDS 106 (422)
Q Consensus 61 l~~~m~~kle~l~~r~~eLe~~lsdP~~----d~~~~~kl~Ke~~~L~~i 106 (422)
.++.-..+++++..+++.++..+..-.+ ++...+++.+.++.|+.-
T Consensus 901 ~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 901 KVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELERE 950 (1293)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHH
Confidence 4445555666666666666555554433 333444444444444443
No 150
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=20.09 E-value=6.4e+02 Score=22.64 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014582 63 KIMEQRVLAIERRSACLENL 82 (422)
Q Consensus 63 ~~m~~kle~l~~r~~eLe~~ 82 (422)
..+..++..|+.+|..|+.+
T Consensus 23 ~~v~~~l~~LEae~q~L~~k 42 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQK 42 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44556788899999888754
Done!