RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014582
(422 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 243 bits (622), Expect = 7e-78
Identities = 108/342 (31%), Positives = 182/342 (53%), Gaps = 10/342 (2%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A + R + + QP+ P KE L + + +++ +++ G +
Sbjct: 26 AKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSG----LL 81
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E + + D + E + +D + + L + + D DC L+++AG+GG EA
Sbjct: 82 ELAVEADDEETFNEAVA-ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQD 140
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
+A + +MY R+++ +G+K E++ +E ++ G K + ISG YG L+ E+G+HR+ R
Sbjct: 141 WASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVR 200
Query: 249 VPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
+ GR HTS S + P+ D+ +D+ + DLRID YR+ G+GGQH N T SAVR+
Sbjct: 201 KSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRI 260
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
THIPTG+ Q++RSQH NK +A+K + AKLYE+E + + + + + G +
Sbjct: 261 THIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIG-WGSQ 319
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
IR+Y R+ D R G+ +++G LD FI+A L
Sbjct: 320 IRSYVLDDSRIKDLRTGVETRNTQAVLDGS-LDQFIEASLKA 360
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 233 bits (594), Expect = 5e-74
Identities = 157/349 (44%), Positives = 237/349 (67%), Gaps = 8/349 (2%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A+ R ++ L+ + A + ++E +L D ++ + Q++I+ + ++
Sbjct: 1 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML- 59
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+D +M +MA +EL A ++ ++L+ L LLPKD DER+ LEVRAGTGG+EA+L
Sbjct: 60 ---DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAAL 116
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MY RY++ + W+ E++ +E + GYKE A ISG GVYG+LKFESG HRVQR
Sbjct: 117 FAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQR 176
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED-LRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ + ++ N LRIDT+RS G+GGQH NTT+SA+R+
Sbjct: 177 VPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRI 236
Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
TH+PTG+ + QDERSQH NKAKAL VL A+++ E ++ + + R +GSGDRS+R
Sbjct: 237 THLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDR 296
Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
RTYNFPQGRVTDHR+ +T + + ++MEG+ LD+ I+ ++ + + D +A
Sbjct: 297 NRTYNFPQGRVTDHRINLTLYRLDEVMEGK-LDMLIEPIIQEHQADQLA 344
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 216 bits (552), Expect = 6e-68
Identities = 140/345 (40%), Positives = 213/345 (61%), Gaps = 15/345 (4%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
++ + +E L+ +P+ +P + E K+ +EI+ + + I E
Sbjct: 1 MKEKKKEIEKLLARPDLTPEQMKNYGMEYAKI--------------EEIENITNRIKETQ 46
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
E ++L E EK L L + L I+E+R GTGGEEA+LFA
Sbjct: 47 EFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFAR 106
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY+++KGW EV + E+DL G +E + G YG LK+ESG+HRVQRVP+
Sbjct: 107 DLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPV 166
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTS +VA+LP+ +E D+ +R EDL+I+T+R+ G GGQ+ N T SAVR+TH+P
Sbjct: 167 TESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLP 226
Query: 312 TGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTY 371
TG+ +S Q+ERSQ+ NK AL++L A+LY++++ + S+ R QIG+G+RSE+IRTY
Sbjct: 227 TGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTY 286
Query: 372 NFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIA 416
NFPQ RVTDHR+ T + + ++++G+ LD I L+ + +
Sbjct: 287 NFPQNRVTDHRINYTSYRLQEILDGD-LDEIISKLIEHDIENNLE 330
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 70.4 bits (172), Expect = 1e-15
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 25/98 (25%)
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI------------------ 310
A + + + L I RS G GGQ+ N NS V
Sbjct: 8 EHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALT 67
Query: 311 -------PTGMTISIQDERSQHMNKAKALKVLCAKLYE 341
+ ++ + R Q N A+ L+ + + E
Sbjct: 68 HKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 310
Score = 28.7 bits (64), Expect = 1.2
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE-----DKDMLDMATEELCLAI 148
K NK + K++ + ++ S+ ++ ++ E++ A
Sbjct: 166 RKMNKHVLKIQKELEEA--KEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQ 223
Query: 149 DEEKRLQSLLLKSL-------LPKDDADERD 172
E+K L ++ + L + + D
Sbjct: 224 SEQKNLFLVIFQRFIMILTEHLVRCETDGTS 254
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.7 bits (58), Expect = 6.8
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL-IYECSEDKDMLDMATEELCLAID 149
AE + NKEL +R L K+ K L I+ D D M L +
Sbjct: 20 AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNR 79
Query: 150 -EEKRLQSLLLKSLLPKDD 167
EK++ L + L+ +
Sbjct: 80 YTEKQIGYLFISVLVNSNS 98
>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2
{Staphylococcus aureus [TaxId: 1280]}
Length = 225
Score = 25.9 bits (56), Expect = 8.6
Identities = 7/67 (10%), Positives = 23/67 (34%)
Query: 33 QRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAE 92
+++ + +L+ + + I + A +R++ L + + +
Sbjct: 141 AKYYFNKDLKDLNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQ 200
Query: 93 YSKANKE 99
+ A K
Sbjct: 201 WEDAKKI 207
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.363
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,463,525
Number of extensions: 66758
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 12
Length of query: 422
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,199,356
Effective search space: 400584904
Effective search space used: 400584904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)