Query 014583
Match_columns 422
No_of_seqs 224 out of 1576
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 1.6E-79 3.5E-84 557.4 22.5 358 53-411 35-397 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 1.3E-76 2.9E-81 529.4 28.2 363 52-415 25-395 (408)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 3.4E-75 7.4E-80 520.7 27.4 366 54-419 40-418 (421)
4 KOG0138 Glutaryl-CoA dehydroge 100.0 2.6E-74 5.7E-79 513.3 29.3 391 24-414 24-416 (432)
5 PLN02526 acyl-coenzyme A oxida 100.0 1.8E-67 3.9E-72 525.4 43.5 391 30-420 4-394 (412)
6 cd01151 GCD Glutaryl-CoA dehyd 100.0 8.4E-67 1.8E-71 517.4 43.1 369 51-420 9-378 (386)
7 PLN02636 acyl-coenzyme A oxida 100.0 2.5E-67 5.5E-72 545.8 39.4 412 2-420 9-481 (686)
8 PLN02312 acyl-CoA oxidase 100.0 5.9E-65 1.3E-69 527.0 37.7 417 1-420 1-483 (680)
9 cd01162 IBD Isobutyryl-CoA deh 100.0 2.1E-63 4.5E-68 491.4 41.4 366 55-421 1-371 (375)
10 PRK12341 putative acyl-CoA deh 100.0 2.1E-63 4.5E-68 492.2 41.2 365 51-419 1-373 (381)
11 PRK03354 crotonobetainyl-CoA d 100.0 2.2E-63 4.7E-68 491.8 41.1 368 51-421 1-374 (380)
12 PLN02519 isovaleryl-CoA dehydr 100.0 4.1E-63 8.9E-68 493.2 41.9 368 52-419 23-397 (404)
13 cd01160 LCAD Long chain acyl-C 100.0 4.5E-63 9.7E-68 488.8 41.2 362 58-420 2-369 (372)
14 cd01157 MCAD Medium chain acyl 100.0 5.3E-63 1.2E-67 489.2 41.0 365 55-420 1-373 (378)
15 TIGR03203 pimD_small pimeloyl- 100.0 2.9E-63 6.3E-68 489.4 38.3 363 53-420 2-374 (378)
16 PTZ00461 isovaleryl-CoA dehydr 100.0 6.8E-63 1.5E-67 492.6 41.3 366 53-420 35-403 (410)
17 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 6.6E-63 1.4E-67 487.3 40.7 363 55-420 1-369 (372)
18 cd01156 IVD Isovaleryl-CoA deh 100.0 1.4E-62 3E-67 486.0 41.8 366 55-420 2-372 (376)
19 cd01161 VLCAD Very long chain 100.0 1.7E-62 3.7E-67 489.8 39.8 370 49-421 21-403 (409)
20 PRK09463 fadE acyl-CoA dehydro 100.0 3.5E-61 7.6E-66 500.7 41.2 356 55-416 79-464 (777)
21 cd01158 SCAD_SBCAD Short chain 100.0 1E-60 2.2E-65 472.2 39.7 364 58-421 2-370 (373)
22 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 4.8E-60 1.1E-64 470.1 37.9 363 59-421 3-391 (394)
23 PRK13026 acyl-CoA dehydrogenas 100.0 4.3E-59 9.3E-64 483.2 41.1 356 55-416 78-463 (774)
24 cd01153 ACAD_fadE5 Putative ac 100.0 2.6E-58 5.6E-63 459.2 39.2 352 63-419 2-402 (407)
25 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.9E-58 4.1E-63 459.0 37.8 367 54-420 4-384 (393)
26 TIGR03204 pimC_large pimeloyl- 100.0 6.2E-58 1.3E-62 454.3 40.3 362 53-420 2-390 (395)
27 KOG0137 Very-long-chain acyl-C 100.0 7.5E-60 1.6E-64 455.4 24.3 374 46-419 67-455 (634)
28 PLN02876 acyl-CoA dehydrogenas 100.0 4.9E-57 1.1E-61 484.1 38.6 369 53-421 400-815 (822)
29 cd01152 ACAD_fadE6_17_26 Putat 100.0 7.9E-57 1.7E-61 445.1 33.7 356 57-420 1-376 (380)
30 PTZ00456 acyl-CoA dehydrogenas 100.0 4.3E-56 9.2E-61 457.9 39.5 358 57-418 58-473 (622)
31 cd01163 DszC Dibenzothiophene 100.0 2E-56 4.4E-61 442.0 33.9 348 65-418 2-370 (377)
32 cd01154 AidB Proteins involved 100.0 3.2E-54 7E-59 430.3 36.1 347 65-421 36-415 (418)
33 cd01150 AXO Peroxisomal acyl-C 100.0 1.2E-54 2.5E-59 449.1 29.6 307 114-420 80-440 (610)
34 PTZ00460 acyl-CoA dehydrogenas 100.0 7.8E-54 1.7E-58 442.3 29.9 292 129-420 88-427 (646)
35 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 2E-53 4.3E-58 407.0 19.5 371 45-419 29-459 (661)
36 PLN02443 acyl-coenzyme A oxida 100.0 2.6E-51 5.6E-56 424.3 32.3 287 134-420 97-436 (664)
37 cd00567 ACAD Acyl-CoA dehydrog 100.0 2.7E-50 5.9E-55 390.8 36.6 320 58-420 2-327 (327)
38 PRK11561 isovaleryl CoA dehydr 100.0 2.2E-50 4.9E-55 406.9 34.6 322 90-421 90-438 (538)
39 cd01159 NcnH Naphthocyclinone 100.0 8.9E-51 1.9E-55 400.6 28.2 339 65-420 2-366 (370)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 9.9E-47 2.2E-51 377.9 36.5 287 94-415 58-362 (520)
41 KOG1469 Predicted acyl-CoA deh 100.0 2.4E-49 5.2E-54 348.6 13.7 330 90-420 27-378 (392)
42 KOG0136 Acyl-CoA oxidase [Lipi 100.0 1.9E-37 4.2E-42 304.1 16.4 292 129-420 104-444 (670)
43 TIGR02309 HpaB-1 4-hydroxyphen 100.0 3.5E-27 7.7E-32 236.2 25.5 235 148-390 119-391 (477)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 1.7E-21 3.6E-26 167.1 15.6 147 275-421 2-148 (150)
45 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 1.7E-18 3.7E-23 141.1 10.2 112 56-167 1-113 (113)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.6 2E-15 4.3E-20 126.9 12.4 122 289-410 1-132 (134)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 4.3E-16 9.3E-21 107.7 6.7 52 171-222 1-52 (52)
48 TIGR02310 HpaB-2 4-hydroxyphen 99.5 2.3E-12 5E-17 129.2 23.4 233 154-388 136-401 (519)
49 COG2368 Aromatic ring hydroxyl 99.5 2.6E-12 5.6E-17 124.5 21.5 236 150-391 125-400 (493)
50 PF11794 HpaB_N: 4-hydroxyphen 98.8 2.6E-08 5.6E-13 91.9 9.9 118 154-271 123-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 96.1 0.11 2.3E-06 46.8 11.9 72 319-390 43-119 (205)
52 PF14749 Acyl-CoA_ox_N: Acyl-c 96.0 0.014 3.1E-07 48.0 5.7 36 134-169 90-125 (125)
53 PTZ00457 acyl-CoA dehydrogenas 95.1 0.34 7.4E-06 49.8 12.7 78 316-394 429-507 (520)
54 KOG0137 Very-long-chain acyl-C 92.4 1.4 3E-05 44.9 10.9 70 316-385 533-603 (634)
55 PRK09463 fadE acyl-CoA dehydro 42.9 2.5E+02 0.0054 30.8 11.2 64 316-383 559-622 (777)
56 PF01726 LexA_DNA_bind: LexA D 42.7 81 0.0017 22.4 5.2 50 54-103 3-58 (65)
57 PF12584 TRAPPC10: Trafficking 28.4 89 0.0019 26.2 4.1 61 192-262 66-139 (147)
58 PF13051 DUF3912: Protein of u 22.3 1.3E+02 0.0029 20.6 3.1 36 197-232 2-37 (68)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-79 Score=557.36 Aligned_cols=358 Identities=31% Similarity=0.461 Sum_probs=347.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCch
Q 014583 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (422)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s 131 (422)
..+++.+..+++.+++|+++.+.|.++++|++..+|..+++.+.++||+++.+ ++|||.|.+......++||+++.|+|
T Consensus 35 ~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~s 114 (398)
T KOG0139|consen 35 QILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDAS 114 (398)
T ss_pred hhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCcc
Confidence 46789999999999999999999999999999999999999999999999987 99999999999999999999999999
Q ss_pred hhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCc
Q 014583 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF 211 (422)
Q Consensus 132 ~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ 211 (422)
+++++.+|+++...+|..||+++||++|+|.+ .|+.++|||+|||+.|||+..+.|+|+++||.|+|||.|.||||+..
T Consensus 115 v~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~ 193 (398)
T KOG0139|consen 115 VGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGE 193 (398)
T ss_pred ceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcc
Confidence 99999999999999999999999999888875 68889999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEecCC---CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHH
Q 014583 212 ADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVS 287 (422)
Q Consensus 212 ad~~~v~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~ 287 (422)
|++++|+|.++.. +|+++|+||++.||+++.+..+|+|||++.++.++|+||+||++++||+. .|+++....|+.+
T Consensus 194 A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~g 273 (398)
T KOG0139|consen 194 ADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAG 273 (398)
T ss_pred cceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCcc
Confidence 9999999999654 78999999999999999999999999999999999999999999999996 7999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHH
Q 014583 288 RVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSW 367 (422)
Q Consensus 288 r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~ 367 (422)
|++++++.+|++++|++.++.|+++|.+||++|.++|.+|++||+|.+++|++|+++|+++++-|.+.+-..+++|+|.+
T Consensus 274 RIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ 353 (398)
T KOG0139|consen 274 RIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLY 353 (398)
T ss_pred ceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHH
Q 014583 368 ITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCK 411 (422)
Q Consensus 368 ~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~ 411 (422)
+++.+..+.+.|+|+.||.||++++|.+|+|||++...+++|+.
T Consensus 354 ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGts 397 (398)
T KOG0139|consen 354 ASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTS 397 (398)
T ss_pred hhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCC
Confidence 99999999999999999999999999999999999999988753
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-76 Score=529.45 Aligned_cols=363 Identities=28% Similarity=0.388 Sum_probs=351.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCc
Q 014583 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (422)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~ 130 (422)
++.|+++|.++++.+++|..+++.|.+.++|+.++||.+++++..++||.+..+ +++||+|++..+.+.+.|+|+.+|.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 578999999999999999999999999999999999999999999999999977 9999999999999999999999999
Q ss_pred hhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCC
Q 014583 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (422)
Q Consensus 131 s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~ 210 (422)
++...+..|. ++.++|..+|+++||++||++++...+++++++|||+.|||+.++.|+|++.||.|+|||+|.||||++
T Consensus 105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G 183 (408)
T KOG0140|consen 105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG 183 (408)
T ss_pred hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEecCC------CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHH
Q 014583 211 FADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (422)
Q Consensus 211 ~ad~~~v~a~~~~~------~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~ 283 (422)
+|+|++|+||++++ +++..|+|+.++||++..+.+.+||.|.+++..|+|+||+||.+|+||.+ .||+..+..
T Consensus 184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~ 263 (408)
T KOG0140|consen 184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG 263 (408)
T ss_pred ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence 99999999999764 57899999999999999999999999999999999999999999999986 799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhH
Q 014583 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASL 363 (422)
Q Consensus 284 l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~ 363 (422)
++.+|..+|+.++|++++|++++.+|+.+|++||+||+++|.+|.+|++|..+++.+|++.+.+++.+|++......+++
T Consensus 264 fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSi 343 (408)
T KOG0140|consen 264 FDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASI 343 (408)
T ss_pred ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHH
Q 014583 364 GKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIV 415 (422)
Q Consensus 364 ~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~ 415 (422)
+|.++++.+.+++..++|++||+||.+++|++++.||++++.+++++++++.
T Consensus 344 AK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqR 395 (408)
T KOG0140|consen 344 AKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQR 395 (408)
T ss_pred HHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHH
Confidence 9999999999999999999999999999999999999999999988766543
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-75 Score=520.72 Aligned_cols=366 Identities=27% Similarity=0.401 Sum_probs=349.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCC--HHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCc
Q 014583 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (422)
Q Consensus 54 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~ 130 (422)
-+++++..+|+.+++|+++++.|.+.++|+.++|+ +++|+++.++||++++. ++|||.|.+....+.+.||+++...
T Consensus 40 g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g 119 (421)
T KOG0141|consen 40 GLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASG 119 (421)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcC
Confidence 48999999999999999999999999999999994 78999999999999987 9999999999999999999999999
Q ss_pred hhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCC
Q 014583 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (422)
Q Consensus 131 s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~ 210 (422)
+++..++.|.++++.-|...|++|||++|||.+.+|+.+|+.|||||+.|||+.++.++|+++++.|+|||.|.||||++
T Consensus 120 ~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~ 199 (421)
T KOG0141|consen 120 GVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGP 199 (421)
T ss_pred CcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEecCC-----CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHh
Q 014583 211 FADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (422)
Q Consensus 211 ~ad~~~v~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l 284 (422)
.||..+|.|+++.. .|+++|+|+++.||++..+..+|+||||++++++.|+|++||++++||.. .++-+++..|
T Consensus 200 ~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgL 279 (421)
T KOG0141|consen 200 DADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGL 279 (421)
T ss_pred CCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCC
Confidence 99999999999643 78999999999999999999999999999999999999999999999987 5776778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHH
Q 014583 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (422)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~ 364 (422)
+..|+.+++..+|+++.+++.+..|+++|++||++++.||.+|.++|+|.+.+.+.|+.++.+++..|.+..++..++++
T Consensus 280 d~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~ 359 (421)
T KOG0141|consen 280 DLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGV 359 (421)
T ss_pred ChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccH----HHHHHHHHHHHh
Q 014583 365 KSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDH----FVCKNLIVSNYL 419 (422)
Q Consensus 365 K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~----~~~~~~~~~~~~ 419 (422)
+.|++|.+.+|+-+|+|++||+||+.++|++|++||++++.+. ++-+..|.+++.
T Consensus 360 il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~ 418 (421)
T KOG0141|consen 360 ILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELN 418 (421)
T ss_pred hhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999855 555555665554
No 4
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-74 Score=513.34 Aligned_cols=391 Identities=37% Similarity=0.529 Sum_probs=374.4
Q ss_pred CcccccccCCCCCCCCCCCCCCCCcccCccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccc
Q 014583 24 PALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG 103 (422)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~ 103 (422)
|........++..+++.+|+-..|++.++..|++++..+++.+|+++++++.|+..+++++++|+++++.++...|+++.
T Consensus 24 ~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~ 103 (432)
T KOG0138|consen 24 APTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGP 103 (432)
T ss_pred chhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccC
Confidence 44444444555667778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCc
Q 014583 104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 183 (422)
Q Consensus 104 ~~~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~ 183 (422)
.++.||+.|.|...+..+..|+.+.|.+...++.+|.++++.+|..+|+++||++|||.+++|+.++||++|||.||||+
T Consensus 104 tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdp 183 (432)
T KOG0138|consen 104 TIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDP 183 (432)
T ss_pred cccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEECCE--EEEEeEeeecCCCCcccEEEEEEEecCCCCeEEEEEeCCCCCeeeecccCccccccccceeEEEc
Q 014583 184 SALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLK 261 (422)
Q Consensus 184 ~~~~t~a~~~~~~--~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~ 261 (422)
.+++|+|+++..+ |.|||+|.||+|++.||+++||||.+.++.+..|+|+++.+|++..++.+|+++|.+.++.|-+|
T Consensus 184 sgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd 263 (432)
T KOG0138|consen 184 SGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMD 263 (432)
T ss_pred ccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeecccCceeec
Confidence 9999999998876 99999999999999999999999998778999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHH
Q 014583 262 KVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMI 341 (422)
Q Consensus 262 ~v~Vp~~~~l~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~ 341 (422)
||+||++++|+..+++......|+..|+++||..+|+++.|++.+.+|+.+|+|||+|++.+|.+|.+|++|+.++..+.
T Consensus 264 ~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl 343 (432)
T KOG0138|consen 264 GVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGL 343 (432)
T ss_pred CCcCChhhcCCCccccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHH
Q 014583 342 LVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLI 414 (422)
Q Consensus 342 ~~~~~~a~~~d~~~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~ 414 (422)
.+++++.++.|+++..+..+++.|.+.+..++++++.+++++||+|+..++.+.|.+-|.+..-+++++.++-
T Consensus 344 ~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDih 416 (432)
T KOG0138|consen 344 QACLRLGRLKDQGKATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIH 416 (432)
T ss_pred HHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887766654
No 5
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.8e-67 Score=525.37 Aligned_cols=391 Identities=83% Similarity=1.281 Sum_probs=363.7
Q ss_pred ccCCCCCCCCCCCCCCCCcccCccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccccccC
Q 014583 30 VAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYG 109 (422)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~G 109 (422)
..+++.++++-+||.-++.+.|+..+++++..+++.+++|+.+++.|...++++...+|.+.|++|.++||+++.+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~~G 83 (412)
T PLN02526 4 VAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKGYG 83 (412)
T ss_pred cccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcccccC
Confidence 45667788888999877888899889999999999999999999999887877788899999999999999998779999
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeE
Q 014583 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTT 189 (422)
Q Consensus 110 G~g~~~~~~~~~~e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~ 189 (422)
|.|+++.+.+.+++++++.|++++..+.+|..+++..+..+|+++||++|++++.+|+.++|+++|||++|||+..+.|+
T Consensus 84 G~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~ 163 (412)
T PLN02526 84 CPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTT 163 (412)
T ss_pred CCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeE
Confidence 99999999999999999999998877788887777789999999999999999999999999999999999999999999
Q ss_pred EEEECCEEEEEeEeeecCCCCcccEEEEEEEecCCCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCC
Q 014583 190 ATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269 (422)
Q Consensus 190 a~~~~~~~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~ 269 (422)
|++++|||+|||+|+||+|+..||+++|++++++++++.+|+||.+.|||++.+.|+++|+++++++.|+|+||+||+++
T Consensus 164 a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~ 243 (412)
T PLN02526 164 ATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDED 243 (412)
T ss_pred EEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHH
Confidence 99999999999999999999999999999998755678899999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014583 270 RLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCK 349 (422)
Q Consensus 270 ~l~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~ 349 (422)
+|+...++......+...|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++.+++++++
T Consensus 244 ~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~ 323 (412)
T PLN02526 244 RLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCK 323 (412)
T ss_pred hCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876677777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 350 LYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 350 ~~d~~~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
.+|.+......++++|+++++.+.++++.|+++|||.||..+++++|+|||++..++|++.++++...+.+
T Consensus 324 ~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~ 394 (412)
T PLN02526 324 LYESGKMTPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGR 394 (412)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHH
Confidence 99876555667899999999999999999999999999999999999999999999999888877766554
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=8.4e-67 Score=517.36 Aligned_cols=369 Identities=39% Similarity=0.632 Sum_probs=348.8
Q ss_pred CccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcC
Q 014583 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (422)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d 129 (422)
|++.+++++.++++.+++|+++++.|...+.++++.+|.++|++|.+.||+++ + ++|||.|+++.+...+++++++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~ 87 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVD 87 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhC
Confidence 67779999999999999999999999988888888999999999999999999 8 899999999999999999999999
Q ss_pred chhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCC
Q 014583 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (422)
Q Consensus 130 ~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a 209 (422)
.++++.+.+|..++...+..+|+++||++|++++.+|++++|+++|||++|||+.++.|+|++++|||+|||+|.||||+
T Consensus 88 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~ 167 (386)
T cd01151 88 SGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNS 167 (386)
T ss_pred hhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCC
Confidence 99888888887677778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEEEEecCCCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCCCCHHHHHHHhHHHHH
Q 014583 210 TFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRV 289 (422)
Q Consensus 210 ~~ad~~~v~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~~~~~~~~~~l~~~r~ 289 (422)
..||+++|+|++++++++.+|+||++.|||++.+.|+++|+++++++.+.|+||+||++++|+...++......+...|+
T Consensus 168 ~~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~ 247 (386)
T cd01151 168 PIADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARY 247 (386)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHH
Confidence 99999999999976677889999999999999999999999999999999999999999999877788777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHHHH
Q 014583 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWIT 369 (422)
Q Consensus 290 ~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~~~ 369 (422)
.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++.+++++++.+|.+.....+.+++|.+++
T Consensus 248 ~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~ 327 (386)
T cd01151 248 GIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNC 327 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987666678899999999
Q ss_pred HHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 370 ARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 370 ~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
+.+.+++..++++|||.||..+++++|+|||++...+++++++++...+.+
T Consensus 328 ~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~ 378 (386)
T cd01151 328 GKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGR 378 (386)
T ss_pred HHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988887776654
No 7
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.5e-67 Score=545.85 Aligned_cols=412 Identities=19% Similarity=0.230 Sum_probs=358.0
Q ss_pred CCCCCCChhhhhhHHhhcCCCCCcccccccCCCCCCCCCCCCCCCCcccCccCCCHHHHHHHHHHHHHHHhhc---cccH
Q 014583 2 TIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEI---APIM 78 (422)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~ 78 (422)
+.+++....+||++.++.||.+...... ....+..-.......+|+..+...+++++.++++++++|+++++ .|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~ 87 (686)
T PLN02636 9 RAEDDGEIAARRIQRLSLHLSPVPLPKE-EQLSRLVCARSIKLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVE 87 (686)
T ss_pred ccccchhHHHHHHHHHHHhcCcCCCCCc-ccCCcccccccccCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccCCch
Confidence 4567778889999999999985543322 11111111112334678888888899989999999999998873 5766
Q ss_pred HHHHHhCCCC-HHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHH
Q 014583 79 AEYWEKAEFP-FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156 (422)
Q Consensus 79 ~~~~~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk 156 (422)
..+++.++++ .++++.+++.|++++.+ ++ ++.++..+.|+++++|++++..+++|+++++..|..+||++||
T Consensus 88 ~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk 161 (686)
T PLN02636 88 ISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHR 161 (686)
T ss_pred hhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHH
Confidence 7777788888 88999999999999865 33 7888999999999999999888999999999999999999999
Q ss_pred HhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEE--CCEEEEE-----eEeeecCCCCc-ccEEEEEEEecC-----
Q 014583 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNSTF-ADVLVIFARNTT----- 223 (422)
Q Consensus 157 ~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~Ln-----G~K~~is~a~~-ad~~~v~a~~~~----- 223 (422)
++|||++.+|++++|||+|||++|||+.+++|||+++ +|+|+|| |+|+||+|++. ||+++|+|++..
T Consensus 162 ~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~ 241 (686)
T PLN02636 162 DKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDS 241 (686)
T ss_pred HHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCc
Confidence 9999999999999999999999999999999999998 7899999 99999999975 999999999851
Q ss_pred ----CCCeEEEEEeCC-------CCCeeeecccCccccccccceeEEEceeecCCCCCCCC-----------------CC
Q 014583 224 ----TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----------------VN 275 (422)
Q Consensus 224 ----~~~~~~flV~~~-------~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~-----------------~~ 275 (422)
+.|+++|+||.+ .|||++.++++|+|+++++++.|.||||+||++++|+. ..
T Consensus 242 ~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~ 321 (686)
T PLN02636 242 KGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINK 321 (686)
T ss_pred cCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcch
Confidence 358999999987 59999999999999999999999999999999999952 24
Q ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcc------cccchhhHHHHHHHHHHHHHHH----HHHH
Q 014583 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP------LAAFQINQQKLVQMLGNIQAMI----LVGW 345 (422)
Q Consensus 276 ~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~------l~~~~~vq~~La~~~~~~~a~~----~~~~ 345 (422)
+|......+..+|+.+++.++|++++|+++|++|+++|+|||+| |++||.+|++|++|++++++++ .+++
T Consensus 322 gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~ 401 (686)
T PLN02636 322 RFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVE 401 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999999999999999999999999999 9999999999999999999966 4444
Q ss_pred HHHHHHHcCC-----CChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 346 RLCKLYEKGA-----MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 346 ~~a~~~d~~~-----~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
.+++..+.+. +.+..++++|+++++.+.++++.|+|+|||+||+.+++++++|||++..++++|+++++..++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr 481 (686)
T PLN02636 402 RYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAA 481 (686)
T ss_pred HHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHH
Confidence 4444444332 35667899999999999999999999999999999999999999999999999999999888765
No 8
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=5.9e-65 Score=526.96 Aligned_cols=417 Identities=21% Similarity=0.244 Sum_probs=356.6
Q ss_pred CCCCCCCChhhhhhHHhhcCCCCCcccccccCCCCCCC-CCCCC-----CCCCcccCccCCCHHHHHHHHHHHHHHHhhc
Q 014583 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPA-SKFPP-----CASDYYQFDDLLTSEEQAVRMKVRECMEKEI 74 (422)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 74 (422)
|.++++.+.++||+++|+.||..|.+. +.....+.+- ++.|| .++|+..|...+..+..+.++++++++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p 79 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQSPPS-PNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSD 79 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCCCCC-CcccCCchhhhhcCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCc
Confidence 788999999999999999999874322 2222222111 11222 2566666777777777788899999887542
Q ss_pred c-------------ccH-HHHHHhCCCCHHHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHh
Q 014583 75 A-------------PIM-AEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHS 140 (422)
Q Consensus 75 ~-------------~~~-~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~~~h~ 140 (422)
. |.. ...++..+++.+.++++.+.|+++..+++- |.+ +....+.+.|++++.|++++..+++|+
T Consensus 80 ~f~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~-g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~ 157 (680)
T PLN02312 80 LFNSKRRGGRVFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTET-GPE-AELRKLALLEVIGIYDHSLAIKLGVHF 157 (680)
T ss_pred cccccccccccccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCCC-CCc-cHHHHHHHHHHHHHhcchHHHHHHhhh
Confidence 1 111 124566788899999999999999876442 333 677888999999999999988899999
Q ss_pred hHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEE--CCEEEEE-----eEeeecCCC-Ccc
Q 014583 141 SLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFA 212 (422)
Q Consensus 141 ~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~Ln-----G~K~~is~a-~~a 212 (422)
++++..|..+||++||++|||++.+|++++|||+|||+||||+.+++|||+++ +|+|+|| |+|+||+|+ ..|
T Consensus 158 ~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A 237 (680)
T PLN02312 158 FLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHA 237 (680)
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccC
Confidence 89999999999999999999999999999999999999999999999999998 5789999 799999998 689
Q ss_pred cEEEEEEEecC---CCCeEEEEEeC---C---CCCeeeecccCccccccccceeEEEceeecCCCCCCCC----------
Q 014583 213 DVLVIFARNTT---TNQINGYLVKK---D---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---------- 273 (422)
Q Consensus 213 d~~~v~a~~~~---~~~~~~flV~~---~---~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~---------- 273 (422)
|+++|+|++.. +.|+++|+||. + .|||++.++++|+|+++++++.|.|+||+||++++|+.
T Consensus 238 ~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y 317 (680)
T PLN02312 238 THTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKY 317 (680)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCce
Confidence 99999999853 25899999983 3 89999999999999999999999999999999999984
Q ss_pred -------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc----c---cccchhhHHHHHHHHHHHHH
Q 014583 274 -------VNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA----P---LAAFQINQQKLVQMLGNIQA 339 (422)
Q Consensus 274 -------~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~----~---l~~~~~vq~~La~~~~~~~a 339 (422)
..++......+..+|+.+++.++|++++|++.|++|+++|+|||+ | |++||.+|++|++|++++++
T Consensus 318 ~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a 397 (680)
T PLN02312 318 VSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYA 397 (680)
T ss_pred ecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHH
Confidence 246777788899999999999999999999999999999999995 4 99999999999999999999
Q ss_pred HHHHHHHHHHHHHcC-----CCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHH
Q 014583 340 MILVGWRLCKLYEKG-----AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLI 414 (422)
Q Consensus 340 ~~~~~~~~a~~~d~~-----~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~ 414 (422)
++.....+.+.++.+ ++.+..++++|+++++.+.+++++|+|+|||+||+.+++++++|||++..++++|+++++
T Consensus 398 ~~~~a~~l~~~~~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl 477 (680)
T PLN02312 398 MSFAANDLKMIYVKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVL 477 (680)
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHH
Confidence 998888888877653 235678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 014583 415 VSNYLK 420 (422)
Q Consensus 415 ~~~~~~ 420 (422)
..++.+
T Consensus 478 ~~~iAr 483 (680)
T PLN02312 478 MQQVSK 483 (680)
T ss_pred HHHHHH
Confidence 887765
No 9
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.1e-63 Score=491.35 Aligned_cols=366 Identities=29% Similarity=0.434 Sum_probs=341.8
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhh
Q 014583 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (422)
Q Consensus 55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~ 133 (422)
+++++.++++.+++|+++++.|.+.++|+.+.+|.+.|++|+++||+++.+ ++|||.|.+..+.+.+.++++++|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 477889999999999999999998888998999999999999999999987 8999999999999999999999999998
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCccc
Q 014583 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (422)
Q Consensus 134 ~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad 213 (422)
+.+.+|. ++...+..+|+++||++|+|++.+|+.++++++|||++|||...+.|++++++|+|+|||.|+|+||+.+||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 8888886 466778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCC--CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHHH
Q 014583 214 VLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVM 290 (422)
Q Consensus 214 ~~~v~a~~~~~--~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~ 290 (422)
+++|+++++++ .++++|+||++.|||++.+.|+++|+++++++.+.|+||+||++++|+.. .++......+..+|+.
T Consensus 160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~ 239 (375)
T cd01162 160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLN 239 (375)
T ss_pred EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 99999997543 46889999999999999999999999999999999999999999999875 5777777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhhHHHHHHH
Q 014583 291 VAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLGKSWIT 369 (422)
Q Consensus 291 ~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~-~~~~~~~~K~~~~ 369 (422)
+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++.+++.++.+.. ....++++|++++
T Consensus 240 ~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~ 319 (375)
T cd01162 240 IASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFAT 319 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987643 3446788999999
Q ss_pred HHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhhc
Q 014583 370 ARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL 421 (422)
Q Consensus 370 ~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~l 421 (422)
+.+.++++.++++|||+||..+++++|+|||++....++++++.+...+.+.
T Consensus 320 ~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~ 371 (375)
T cd01162 320 DECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARA 371 (375)
T ss_pred HHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877653
No 10
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-63 Score=492.24 Aligned_cols=365 Identities=21% Similarity=0.281 Sum_probs=332.8
Q ss_pred CccCCCHHHHHHHHHHHHHHHhhcc-ccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhc
Q 014583 51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (422)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~ 128 (422)
|++.+++++..+++.+++|+++.+. +...++|+.+.+|.+.|++|+++||+++.+ ++|||.|.++.+.+.+++++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 4567899999999999999999876 467778888899999999999999999987 89999999999999999999999
Q ss_pred CchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhh-hcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecC
Q 014583 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (422)
Q Consensus 129 d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~-~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is 207 (422)
|.+. +.+ +..++...+..+|+++||++|++++ .+|+.++++++|||++|||+..++|+|++++|+|+|||+|+|||
T Consensus 81 ~~~~-~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is 157 (381)
T PRK12341 81 GAPA-FLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT 157 (381)
T ss_pred ChhH-HHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence 9873 333 3334556688899999999999999 59999999999999999999999999999999999999999999
Q ss_pred CCCcccEEEEEEEecCC----CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHH
Q 014583 208 NSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSK 282 (422)
Q Consensus 208 ~a~~ad~~~v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~ 282 (422)
|+..||+++|+|+++++ .++++|+||++.|||++. .|+++|+++++++.|+|+||+||++++||.. .++.....
T Consensus 158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 236 (381)
T PRK12341 158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY 236 (381)
T ss_pred CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence 99999999999998643 367899999999999995 6999999999999999999999999999875 57777677
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhh
Q 014583 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHAS 362 (422)
Q Consensus 283 ~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~ 362 (422)
.++..|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++.+++++++.++++......++
T Consensus 237 ~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~ 316 (381)
T PRK12341 237 NFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAA 316 (381)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999998888766566789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHh
Q 014583 363 LGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYL 419 (422)
Q Consensus 363 ~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~ 419 (422)
++|+++++.+.++++.+++++||+||.++++++|+|||++...+++++++++...+.
T Consensus 317 ~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~ 373 (381)
T PRK12341 317 LAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAG 373 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888888865544
No 11
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.2e-63 Score=491.79 Aligned_cols=368 Identities=23% Similarity=0.313 Sum_probs=336.2
Q ss_pred CccCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhc
Q 014583 51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (422)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~ 128 (422)
|++.+++++..+++.+++|+++++ .+...+.++.+.||.+.|++|++.||+++.+ ++|||.|+++.++..++++++++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 456789999999999999999875 5666778888899999999999999999977 89999999999999999999999
Q ss_pred CchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCC
Q 014583 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (422)
Q Consensus 129 d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~ 208 (422)
|+|+++.+.+|. ....+..+|+++||++|||++.+|+.+.|+++|||+.|||+..+.|+|++++|||+|||+|+|+||
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~ 158 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS 158 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence 998877666653 245688899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEEecCC---CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHh
Q 014583 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (422)
Q Consensus 209 a~~ad~~~v~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l 284 (422)
+.+||+++|+|+++.+ .++..|+||.+.|||++. .|+++|+|+++++++.|+||+||+++++|.. +++......+
T Consensus 159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~ 237 (380)
T PRK03354 159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF 237 (380)
T ss_pred CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence 9999999999998432 356789999999999986 6899999999999999999999999999875 5676666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHH
Q 014583 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (422)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~ 364 (422)
...|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++++++++++..++.+.......+++
T Consensus 238 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~a 317 (380)
T PRK03354 238 DHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMC 317 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999888765556678999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhhc
Q 014583 365 KSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL 421 (422)
Q Consensus 365 K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~l 421 (422)
|+++++.+.++++.+++++||.||.++++++|+|||++...+|+++++++...+.+.
T Consensus 318 K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~ 374 (380)
T PRK03354 318 KYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRA 374 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888777653
No 12
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=4.1e-63 Score=493.24 Aligned_cols=368 Identities=24% Similarity=0.397 Sum_probs=342.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHH--HHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhc
Q 014583 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (422)
Q Consensus 52 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~ 128 (422)
++.+++++..+++.+++|+++++.|...++|+.+.+|.+ +|++|++.||+++.+ ++|||.|+++.+.+.+++++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 456889999999999999999999999889988889876 699999999999987 89999999999999999999999
Q ss_pred CchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCC
Q 014583 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (422)
Q Consensus 129 d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~ 208 (422)
|+++++.+.+|..+....+..+|+++||++|||++.+|+.++|+++|||++|||...+.|+|++++|||+|||+|+|+||
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 99999988888766677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEEecCC---CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHh
Q 014583 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (422)
Q Consensus 209 a~~ad~~~v~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l 284 (422)
+..||+++|+|+++++ .++.+|+||.+.|||++.+.|+++|+++++++++.|+||+||++++++.. .++......+
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~ 262 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGL 262 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHH
Confidence 9999999999998642 46889999999999999999999999999999999999999999999875 5776667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHH
Q 014583 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (422)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~ 364 (422)
+..|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++|++|.++++++++++++++..++.+.....+.+.+
T Consensus 263 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~a 342 (404)
T PLN02519 263 DLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGV 342 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876666778889
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHh
Q 014583 365 KSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYL 419 (422)
Q Consensus 365 K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~ 419 (422)
|+++++.+.+++..+++++||.||.++++++|+|||++....+++.++++...+.
T Consensus 343 k~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~ 397 (404)
T PLN02519 343 ILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIG 397 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887776665443
No 13
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=4.5e-63 Score=488.77 Aligned_cols=362 Identities=26% Similarity=0.362 Sum_probs=337.4
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 014583 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (422)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~ 136 (422)
++.++++.+++|+.+++.|.+.++|+.+.+|++.|++|+++||+++.+ ++|||.|+++.+...+++++++.+.+ ++.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~ 80 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGL 80 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHH
Confidence 578899999999999999998888888899999999999999999987 99999999999999999999996654 6667
Q ss_pred HHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCcccEEE
Q 014583 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (422)
Q Consensus 137 ~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad~~~ 216 (422)
.+|..++...+..+|+++||++|||++.+|+.++|+++|||++|||...+.|++++++|||+|||+|.|+||+..||+++
T Consensus 81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~ 160 (372)
T cd01160 81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI 160 (372)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence 77876677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC----CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHHHH
Q 014583 217 IFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMV 291 (422)
Q Consensus 217 v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~ 291 (422)
|+++++++ +++++|+||.+.||+++.+.|+++|+++++++.|.|+||+||++++|+.. .++......+...|+.+
T Consensus 161 v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~ 240 (372)
T cd01160 161 VVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLI 240 (372)
T ss_pred EEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99998643 46889999999999999999999999999999999999999999999876 57777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHHHHHH
Q 014583 292 AWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITAR 371 (422)
Q Consensus 292 aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~~~~~ 371 (422)
++.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.+++++++.+++.+++.++.+......++++|+++++.
T Consensus 241 aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~~ 320 (372)
T cd01160 241 AAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATEL 320 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887665566788999999999
Q ss_pred HHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 372 ARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 372 ~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
+.++++.++++|||+||+.+++++|+|||++...+++++++++...+.+
T Consensus 321 a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~ 369 (372)
T cd01160 321 QNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISR 369 (372)
T ss_pred HHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877754
No 14
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=5.3e-63 Score=489.17 Aligned_cols=365 Identities=25% Similarity=0.362 Sum_probs=336.2
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhh
Q 014583 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (422)
Q Consensus 55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~ 133 (422)
+++++..+++.+++|+++.+.|...++|+.+.+|.+.|++|++.||+++.+ ++|||.|++..+...++|++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 467889999999999999999998888988899999999999999999987 9999999999999999999999999887
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCccc
Q 014583 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (422)
Q Consensus 134 ~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad 213 (422)
+.+..|. ++...+..+|+++||++||+++.+|++++++++|||+.|||...+.|++++++|+|+|||+|+|+||+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 81 TAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 7665553 455566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCC------CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHH
Q 014583 214 VLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAV 286 (422)
Q Consensus 214 ~~~v~a~~~~~------~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~ 286 (422)
+++|+++++++ .++.+|+||.+.||+++.+.|.++|+++++++.+.|+||+||.+++|+.. .++......+..
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 239 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK 239 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence 99999998542 35789999999999999999999999999999999999999999999875 578777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHH
Q 014583 287 SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKS 366 (422)
Q Consensus 287 ~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~ 366 (422)
.|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++.+++.+|.+.......+++|+
T Consensus 240 ~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~ 319 (378)
T cd01157 240 TRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKA 319 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988876544556788999
Q ss_pred HHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 367 WITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 367 ~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
++++.+.++++.++++|||.||..+++++|+|||++..++++++++.+...+.+
T Consensus 320 ~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~ 373 (378)
T cd01157 320 FAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISR 373 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888887766643
No 15
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.9e-63 Score=489.39 Aligned_cols=363 Identities=20% Similarity=0.227 Sum_probs=325.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHH--HHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcC
Q 014583 53 DLLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (422)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d 129 (422)
+.+++++..+++.+++|+++++.|.... .++.+.||.++|++|.++||+++.+ ++|||.|++..+.+.++|++++.+
T Consensus 2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 4578999999999999999988765432 4567789999999999999999987 899999999999999999999976
Q ss_pred chhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCC
Q 014583 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (422)
Q Consensus 130 ~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a 209 (422)
.+... + .+..++...+..+|+++||++|||++.+|+.++++++|||++|||+..+.|+|++++|+|+|||+|.||+|+
T Consensus 82 ~~~~~-~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEPY-L-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchHH-H-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 54322 2 222244567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEEEEecC----CCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHh
Q 014583 210 TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (422)
Q Consensus 210 ~~ad~~~v~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l 284 (422)
..||+++|+|++++ .+++++|+||.+.|||++.+.+.++|+ .+++|+|+||+||++++||.. +++......+
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l 236 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVV 236 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHH
Confidence 99999999999853 257899999999999999877777666 468999999999999999875 6788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCChhhhh
Q 014583 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG--AMTPGHAS 362 (422)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~--~~~~~~~~ 362 (422)
+..|+.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.+++++++++++.++...+.+ ++....++
T Consensus 237 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a 316 (378)
T TIGR03203 237 DDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIA 316 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877653 23346789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 363 LGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 363 ~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
++|+++++.+.++++.|+|+|||+||+.+++++++|||++.....+|+.+.+...+..
T Consensus 317 ~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 317 AAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888887776654
No 16
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-63 Score=492.61 Aligned_cols=366 Identities=24% Similarity=0.319 Sum_probs=339.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCch
Q 014583 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (422)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s 131 (422)
+.+++++.++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++.+ ++|||.|+++.+...+.|++++.|++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 36889999999999999999999999888888899999999999999999977 89999999999999999999999998
Q ss_pred hhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECC-EEEEEeEeeecCCCC
Q 014583 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNST 210 (422)
Q Consensus 132 ~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~-~~~LnG~K~~is~a~ 210 (422)
+++.+.+|..+....+..+|+++||++|||++.+|++++|+++|||++|||+.++.|+|++++| +|+|||+|+||||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 8877777765566678889999999999999999999999999999999999999999999764 799999999999999
Q ss_pred cccEEEEEEEecCCCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHH
Q 014583 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289 (422)
Q Consensus 211 ~ad~~~v~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~ 289 (422)
.||+++|+|+++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+.. .++......+...|+
T Consensus 195 ~Ad~~lv~a~~~--~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~ 272 (410)
T PTZ00461 195 VADVFLIYAKVD--GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERV 272 (410)
T ss_pred cCCEEEEEEEeC--CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHH
Confidence 999999999975 46889999999999999999999999999999999999999999999875 677777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHHHH
Q 014583 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWIT 369 (422)
Q Consensus 290 ~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~~~ 369 (422)
.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++.+++.++..++.+......++++|++++
T Consensus 273 ~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~ 352 (410)
T PTZ00461 273 TLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFAT 352 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776544556788999999
Q ss_pred HHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 370 ARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 370 ~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
+.+.++++.++++|||+||..+++++|+|||++.....+|+++++...+.+
T Consensus 353 ~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~ 403 (410)
T PTZ00461 353 PIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITK 403 (410)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888877666654
No 17
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=6.6e-63 Score=487.27 Aligned_cols=363 Identities=25% Similarity=0.302 Sum_probs=335.8
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhh
Q 014583 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (422)
Q Consensus 55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~ 133 (422)
+++++..+++.+++|+++++.|...+.|+.+.+|.+.|++|.+.||+++.+ ++|||.|++..+.+.+.+++++.|.+++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 467888999999999999999999888888899999999999999999977 8999999999999999999999999988
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCccc
Q 014583 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (422)
Q Consensus 134 ~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad 213 (422)
+....+. ++...+..+|+++||++|||++.+|+.++++++|||++|||..++.|+|++++|+|+|||+|+||||+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 81 YVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 7654443 456678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCC----CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHH
Q 014583 214 VLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSR 288 (422)
Q Consensus 214 ~~~v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r 288 (422)
+++|+++++++ .++.+|+||.+.|||++. .|+++|++++++++|+|+||+||++++|+.. .++......++..|
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 238 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR 238 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence 99999998532 467899999999999975 6999999999999999999999999999875 57777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHHH
Q 014583 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWI 368 (422)
Q Consensus 289 ~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~~ 368 (422)
+.+++.++|+++++++.+++|+++|++||+||.++|.||++|++|.+++++++++++++++.++.+......++++|+++
T Consensus 239 ~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~ 318 (372)
T TIGR03207 239 ALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWA 318 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887655556788999999
Q ss_pred HHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 369 TARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 369 ~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
++.+.++++.+++++||.||..+ +++|+|||++..++++++++++...+.+
T Consensus 319 ~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~ 369 (372)
T TIGR03207 319 PKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIAR 369 (372)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhh
Confidence 99999999999999999999999 9999999999999999999999877655
No 18
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.4e-62 Score=486.01 Aligned_cols=366 Identities=30% Similarity=0.436 Sum_probs=341.4
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhh
Q 014583 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (422)
Q Consensus 55 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~ 133 (422)
+++++..+++.+++|+++++.|.+.+.|+.+.+|.+.|+.|+++||+++.+ ++|||.|+++.+...+++++++.|++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 567899999999999999999998888888889999999999999999987 9999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCccc
Q 014583 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (422)
Q Consensus 134 ~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad 213 (422)
+.+..|..++...|..+|+++||++|++++.+|++++++++|||++|||...+.|+|++++|||+|||+|+|+||+..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 88888876666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCC---CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHH
Q 014583 214 VLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289 (422)
Q Consensus 214 ~~~v~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~ 289 (422)
+++|+|+++++ .++.+|+||.+.|||++.+.|+++|+++++++.|.|+||+||++++|+.. .++......+...|+
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 241 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL 241 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence 99999998643 46789999999999999999999999999999999999999999999875 567777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHHHH
Q 014583 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWIT 369 (422)
Q Consensus 290 ~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~~~ 369 (422)
.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++++++.+|.+.......+.+|++++
T Consensus 242 ~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~ 321 (376)
T cd01156 242 VLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAA 321 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877655667888999999
Q ss_pred HHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 370 ARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 370 ~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
+.+.+++..++++|||.||..+++++|+|||++....++++.+.....+.+
T Consensus 322 ~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~ 372 (376)
T cd01156 322 EKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGR 372 (376)
T ss_pred HHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888777655543
No 19
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.7e-62 Score=489.80 Aligned_cols=370 Identities=25% Similarity=0.334 Sum_probs=339.2
Q ss_pred ccCccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHh
Q 014583 49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIAR 127 (422)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~ 127 (422)
.-|+..+++++..+++.+++|+++++.|. ++++.+.+|.++|++|+++||+++.+ ++|||.|+++.+...++|++++
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~ 98 (409)
T cd01161 21 SVLTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM 98 (409)
T ss_pred cccCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh
Confidence 33566678999999999999999988885 35677789999999999999999987 8999999999999999999999
Q ss_pred cCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEE--ECCEEEEEeEeee
Q 014583 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKRW 205 (422)
Q Consensus 128 ~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~--~~~~~~LnG~K~~ 205 (422)
|+++++.+.+|..++...+..+|+++|+++|++++.+|+.++|+++|||++|||...+.|+|++ ++|+|+|||+|+|
T Consensus 99 -~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~ 177 (409)
T cd01161 99 -DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIW 177 (409)
T ss_pred -ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEe
Confidence 9999888888876665667889999999999999999999999999999999999999999999 4568999999999
Q ss_pred cCCCCcccEEEEEEEecC---C----CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCH
Q 014583 206 IGNSTFADVLVIFARNTT---T----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSF 277 (422)
Q Consensus 206 is~a~~ad~~~v~a~~~~---~----~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~ 277 (422)
+||+..||+++|+|+++. + +++.+|+||.+.|||++.++|+++|+++++++.|+|+||+||++++|+.. +++
T Consensus 178 vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~ 257 (409)
T cd01161 178 ITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGF 257 (409)
T ss_pred ecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHH
Confidence 999999999999999752 1 46789999999999999999999999999999999999999999999875 567
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-
Q 014583 278 QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM- 356 (422)
Q Consensus 278 ~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~- 356 (422)
......+..+|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++.+++++++.++++..
T Consensus 258 ~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~ 337 (409)
T cd01161 258 KVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKA 337 (409)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 7777889999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred -ChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhhc
Q 014583 357 -TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL 421 (422)
Q Consensus 357 -~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~l 421 (422)
....++++|+++++.+.++++.+++++||.||..+++++|+|||+++..+++++++++...+.+.
T Consensus 338 ~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~ 403 (409)
T cd01161 338 EYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALT 403 (409)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999998888776553
No 20
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.5e-61 Score=500.66 Aligned_cols=356 Identities=25% Similarity=0.294 Sum_probs=321.1
Q ss_pred CCHHHHHHHHH-HHHHHHhhccccHHHHHH---hCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcC
Q 014583 55 LTSEEQAVRMK-VRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (422)
Q Consensus 55 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d 129 (422)
++++++++++. +++|++. ..+++. .+.+|+++|++|+++||+++.+ ++|||.|++..+.+.++|++++.|
T Consensus 79 Ls~ee~~~~d~~v~~l~~~-----~~~~~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~ 153 (777)
T PRK09463 79 LTAEEQAFLDGPVEELCRM-----VNDWQITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRS 153 (777)
T ss_pred CCHHHHHHHHHHHHHHHHH-----HHHHHHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 78999999886 7777764 234443 4689999999999999999987 999999999999999999999999
Q ss_pred chhhHHHHHHhhHHH-HHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEE-----EEECC---EEEEE
Q 014583 130 ASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA-----TKVEG---GWILE 200 (422)
Q Consensus 130 ~s~~~~~~~h~~~~~-~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a-----~~~~~---~~~Ln 200 (422)
++++..+.+|.+++. .+|..+|+++||++|||++++|+.++||++|||++|||+.++.|++ +++|| +|+||
T Consensus 154 ~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLN 233 (777)
T PRK09463 154 GTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLT 233 (777)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEE
Confidence 988887888877764 4788999999999999999999999999999999999999887654 44566 69999
Q ss_pred eEeeecCCCCcccEEEEEEEe-cC--------CCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCC
Q 014583 201 GQKRWIGNSTFADVLVIFARN-TT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL 271 (422)
Q Consensus 201 G~K~~is~a~~ad~~~v~a~~-~~--------~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l 271 (422)
|+|.||||++.||+++|++++ ++ +.++++|+||.+.|||++.+.+.++|++ ..++.++|+||+||.+++|
T Consensus 234 G~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lL 312 (777)
T PRK09463 234 WNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYII 312 (777)
T ss_pred EEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhc
Confidence 999999999999999999986 21 2578999999999999999999999998 6799999999999999999
Q ss_pred CC----CCCHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 014583 272 PG----VNSFQDTSKVLAVSR-VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWR 346 (422)
Q Consensus 272 ~~----~~~~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~ 346 (422)
|. +.+++.....++.+| +.+++.++|+++++++.+++|+++|+|||+||+++|.||++|++|.+++++++++.+.
T Consensus 313 G~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~ 392 (777)
T PRK09463 313 GGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTL 392 (777)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 468888899999999 9999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCc--chHHHHHhhhhccccHHHHHHHHHH
Q 014583 347 LCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSD--FLVAKVIMLFFLHLDHFVCKNLIVS 416 (422)
Q Consensus 347 ~a~~~d~~~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~--~~~~r~~rD~~~~~~~~~~~~~~~~ 416 (422)
++..+|.+.....+++++|+++++.+.+++++|+|+|||+||+.+ ++++|+|||++...+.+|++++...
T Consensus 393 ~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~ 464 (777)
T PRK09463 393 TTAAVDLGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRS 464 (777)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHH
Confidence 888888876556778999999999999999999999999999997 9999999999999999888766544
No 21
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=1e-60 Score=472.24 Aligned_cols=364 Identities=36% Similarity=0.507 Sum_probs=341.3
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhHHH
Q 014583 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (422)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~ 136 (422)
++.++++.+++|+.+++.+.+.+.|+.+.+|.+.|+.|++.||+++.+ ++|||.|.++.+...+.+++++.|+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~ 81 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV 81 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 578899999999999899988888888889999999999999999987 9999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCcccEEE
Q 014583 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (422)
Q Consensus 137 ~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad~~~ 216 (422)
.+|..++...+..+|+++|+++|++++.+|+.++++++|||++||++..+.+++++++|||+|||+|+|+||+.+||+++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l 161 (373)
T cd01158 82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI 161 (373)
T ss_pred HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence 99987777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC---CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHHHHH
Q 014583 217 IFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVA 292 (422)
Q Consensus 217 v~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~a 292 (422)
|.++++++ .++.+|+||.+.|||++.+.|+++|+++++++.+.|+||+||++++|+.. .++......+..+|+.++
T Consensus 162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~ 241 (373)
T cd01158 162 VFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIA 241 (373)
T ss_pred EEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99997543 45789999999999999999999999999999999999999999999876 567777778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHH
Q 014583 293 WQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARA 372 (422)
Q Consensus 293 a~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~~~~~~ 372 (422)
+.++|+++++++.+++|+++|++||+++.++|.+|+++++|.+++++++++++.++..++.+......++++|+++++.+
T Consensus 242 a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a 321 (373)
T cd01158 242 AQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVA 321 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876655667889999999999
Q ss_pred HHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhhc
Q 014583 373 RETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL 421 (422)
Q Consensus 373 ~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~l 421 (422)
.++++.+++++||.||..+++++|+|||++...+++++++.+...+.+.
T Consensus 322 ~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~ 370 (373)
T cd01158 322 MRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKH 370 (373)
T ss_pred HHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777653
No 22
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=4.8e-60 Score=470.06 Aligned_cols=363 Identities=18% Similarity=0.204 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHhC-------CCC----HHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHH
Q 014583 59 EQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP----FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (422)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la 126 (422)
.+.+++.+++|+++++.|...++++.+ .+| +++|++++++||+++.+ ++|||.|+++.+.+.++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 467899999999999999887776531 144 58888888999999987 999999999999999999999
Q ss_pred hcCc-hhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCC-CCCCcCCCeeEEEEECCEEEEEeEee
Q 014583 127 RVDA-SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR 204 (422)
Q Consensus 127 ~~d~-s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~-~Gs~~~~~~t~a~~~~~~~~LnG~K~ 204 (422)
++|. +..+....+...++..+..+|+++||++|||++.+|+.++++++|||+ .|||+..+.|+|++++|||+|||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 9863 322222222222345788999999999999999999999999999997 58999999999999999999999999
Q ss_pred ecCCCCc--ccEEEEEEEecCC-----CCeEEEEEeCCCCCeeeecccCcccccc--ccceeEEEceeecCCCCCCCCC-
Q 014583 205 WIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV- 274 (422)
Q Consensus 205 ~is~a~~--ad~~~v~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~Gl~~--~~~~~l~f~~v~Vp~~~~l~~~- 274 (422)
|+||+.+ +|+++|+++++++ .++.+|+||++.||+++.+.|+++|+++ +++++|.|+||+||++++|+..
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~ 242 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG 242 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence 9999954 7899999997532 4688999999999999999999999997 5789999999999999999875
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014583 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (422)
Q Consensus 275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~ 354 (422)
.++......+...|+..++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++.+++.++..
T Consensus 243 ~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~ 322 (394)
T cd01155 243 RGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTV 322 (394)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 57777788888999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CC--ChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhhc
Q 014583 355 AM--TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL 421 (422)
Q Consensus 355 ~~--~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~l 421 (422)
.. .....+++|+++++.+.++++.++++|||+||..+++++|+|||++..++++++++++...+.+.
T Consensus 323 ~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~ 391 (394)
T cd01155 323 GNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARM 391 (394)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHH
Confidence 32 45678999999999999999999999999999999999999999999999999999888777653
No 23
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-59 Score=483.22 Aligned_cols=356 Identities=25% Similarity=0.290 Sum_probs=310.0
Q ss_pred CCHHHHHHHH-HHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchh
Q 014583 55 LTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASC 132 (422)
Q Consensus 55 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~ 132 (422)
++++++++.+ .+++++.. + +.....++.+.+|+++|++|+++||+++.+ ++|||.|++..+...+++++++.|.++
T Consensus 78 l~~eeq~fl~~~v~~l~~~-~-~e~~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~ 155 (774)
T PRK13026 78 LTAEEQAFIDNEVETLLTM-L-DDWDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSA 155 (774)
T ss_pred cCHHHHHHHHHHHHHHHhh-h-hhhhhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccch
Confidence 6666666544 56776552 2 122333567899999999999999999987 999999999999999999999988888
Q ss_pred hHHHHHHhhHH-HHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEE-----EECC---EEEEEeEe
Q 014583 133 STFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT-----KVEG---GWILEGQK 203 (422)
Q Consensus 133 ~~~~~~h~~~~-~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~-----~~~~---~~~LnG~K 203 (422)
+..+.+|.+++ ..+|..+||++||++|||++++|+.++|+|+|||++|||+.++.|+++ ++|| ||+|||+|
T Consensus 156 a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K 235 (774)
T PRK13026 156 AVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDK 235 (774)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEE
Confidence 87777887665 457889999999999999999999999999999999999999886654 4666 69999999
Q ss_pred eecCCCCcccEEEEEEEe-cC--------CCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCC-
Q 014583 204 RWIGNSTFADVLVIFARN-TT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG- 273 (422)
Q Consensus 204 ~~is~a~~ad~~~v~a~~-~~--------~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~- 273 (422)
.||||++.||+++|.+++ ++ +.++++|+||.+.|||++.+.++++|+++. ++.++|+||+||.+++||.
T Consensus 236 ~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~ 314 (774)
T PRK13026 236 RYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGP 314 (774)
T ss_pred EeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCc
Confidence 999999999999888764 21 247899999999999999999999999974 6899999999999999986
Q ss_pred ---CCCHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHH---HHHHHHHHHHH
Q 014583 274 ---VNSFQDTSKVLAVSR-VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLG---NIQAMILVGWR 346 (422)
Q Consensus 274 ---~~~~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~---~~~a~~~~~~~ 346 (422)
+.+++.....++.+| +.+++.++|+++.|++.+++|+++|+|||+||+++|.||++|++|.+ .+++++.+++.
T Consensus 315 ~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~ 394 (774)
T PRK13026 315 DYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTT 394 (774)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999 89999999999999999999999999999999999999999999999 57788888776
Q ss_pred HHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCc--chHHHHHhhhhccccHHHHHHHHHH
Q 014583 347 LCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSD--FLVAKVIMLFFLHLDHFVCKNLIVS 416 (422)
Q Consensus 347 ~a~~~d~~~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~--~~~~r~~rD~~~~~~~~~~~~~~~~ 416 (422)
+ +|.+.....+++++|+++++.+.+++++|+|+|||.||+.+ ++++|+|||++...+.+|.+++...
T Consensus 395 a---~D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~ 463 (774)
T PRK13026 395 G---LDLGVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRN 463 (774)
T ss_pred H---HHCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHH
Confidence 5 35555455678999999999999999999999999999998 9999999999999988887766554
No 24
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.6e-58 Score=459.19 Aligned_cols=352 Identities=21% Similarity=0.227 Sum_probs=318.8
Q ss_pred HHHHHHHHHhhccccHHHHHHhCC--------CC---HHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCc
Q 014583 63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (422)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~ 130 (422)
++.+++|+.+++.|.+.++|++.. || .++|++|+++||+++.+ ++|||.|.++.+...+.++++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 678999999999999888887654 99 67899999999999987 9999999999999999999999999
Q ss_pred hhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEE-CCEEEEEeEeeecCCC
Q 014583 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 209 (422)
Q Consensus 131 s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~-~~~~~LnG~K~~is~a 209 (422)
++++.+++|. +...+..+|+++||++|+|++.+|+.++|+++|||++|||+..+.|+++++ +|+|+|||+|+|+||+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9988777664 445678889999999999999999999999999999999999999999998 5789999999999999
Q ss_pred Ccc----cEEEEEEEecCC----CCeEEEEEeCCC-----CCeeeecccCccccccccceeEEEceeecCCCCCCCCC-C
Q 014583 210 TFA----DVLVIFARNTTT----NQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-N 275 (422)
Q Consensus 210 ~~a----d~~~v~a~~~~~----~~~~~flV~~~~-----~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~ 275 (422)
.+| ++++|+++++++ .++++|+||++. |||++.+.|+++|+++++++.|.|+||+|| +|+.. .
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 876 578899987531 368899999987 899999999999999999999999999999 77765 6
Q ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcc--------cccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014583 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP--------LAAFQINQQKLVQMLGNIQAMILVGWRL 347 (422)
Q Consensus 276 ~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~--------l~~~~~vq~~La~~~~~~~a~~~~~~~~ 347 (422)
++......+...|+.+++.++|+++++++.+++|+++|++||+| +.++|.+|++|++|.+++++++++++++
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~a 316 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYT 316 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999999 7889999999999999999999999999
Q ss_pred HHHHHcCCCC--------------hhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHH
Q 014583 348 CKLYEKGAMT--------------PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNL 413 (422)
Q Consensus 348 a~~~d~~~~~--------------~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~ 413 (422)
++.+|..... ...++++|+++++.+.++++.++++|||+||..+++++|+|||+++..+|++++++
T Consensus 317 a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~ 396 (407)
T cd01153 317 ATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGI 396 (407)
T ss_pred HHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHH
Confidence 9988764211 22356899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh
Q 014583 414 IVSNYL 419 (422)
Q Consensus 414 ~~~~~~ 419 (422)
+..+++
T Consensus 397 ~~~~~~ 402 (407)
T cd01153 397 QALDLI 402 (407)
T ss_pred HHHHHh
Confidence 887765
No 25
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.9e-58 Score=458.99 Aligned_cols=367 Identities=33% Similarity=0.457 Sum_probs=332.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHH---hCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcC
Q 014583 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (422)
Q Consensus 54 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d 129 (422)
.+++++..+++.+++|+++.+.|...+.++ .+.+|.+.++++.+.|++++.+ ++|||.|.+..+...+.+++++.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~ 83 (393)
T COG1960 4 DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARAD 83 (393)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhC
Confidence 344788899999999999999888887776 6789999999999999999977 999999999999999999999999
Q ss_pred chhhHHHHHHhhHH---HHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCe-eEEEEECCEEEEEeEeee
Q 014583 130 ASCSTFILVHSSLA---MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKRW 205 (422)
Q Consensus 130 ~s~~~~~~~h~~~~---~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~-t~a~~~~~~~~LnG~K~~ 205 (422)
++.+..+.+|.... ...+..+|+++||++|||++.+|++++|+++|||++|||+..+. |++++++|+|+|||+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~ 163 (393)
T COG1960 84 AGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIW 163 (393)
T ss_pred cchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEE
Confidence 88877666554322 22567799999999999999999999999999999999999887 777775666999999999
Q ss_pred cCCCCcccEEEEEEEecCC----CCeEEEEEeCC-CCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHH
Q 014583 206 IGNSTFADVLVIFARNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQD 279 (422)
Q Consensus 206 is~a~~ad~~~v~a~~~~~----~~~~~flV~~~-~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~ 279 (422)
|||+..||+++|+|+++++ +++++|+||.+ .||+++.+.|++.|+++++++++.|+||+||.+++||.. .++..
T Consensus 164 is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~ 243 (393)
T COG1960 164 ISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKI 243 (393)
T ss_pred EcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHH
Confidence 9999999999999999753 58999999999 599999998875599999999999999999999999965 68899
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChh
Q 014583 280 TSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPG 359 (422)
Q Consensus 280 ~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~ 359 (422)
....++.+|+.+++.++|+++++++.+++|+++|++||+++.++|.+|++|++|.+++++++.++++++...+.+.....
T Consensus 244 ~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~ 323 (393)
T COG1960 244 AMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGA 323 (393)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887654447
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 360 HASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 360 ~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
.++++|.++++.+.++++.++|+|||.||+.+++++|+|||++...++++.+++....+.+
T Consensus 324 ~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~ 384 (393)
T COG1960 324 EAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIAR 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998888777666554
No 26
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=6.2e-58 Score=454.32 Aligned_cols=362 Identities=22% Similarity=0.214 Sum_probs=315.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHH-HhCCCCH----HHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHH
Q 014583 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (422)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la 126 (422)
+.+++++.++++.+++|+.+++.|...+.+ +...+|. ++|++|.++||+++.+ ++|||.|++..+.+.++|+++
T Consensus 2 ~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg 81 (395)
T TIGR03204 2 LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQ 81 (395)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 458899999999999999998888765433 3334664 8999999999999987 999999999999999999999
Q ss_pred hcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeec
Q 014583 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206 (422)
Q Consensus 127 ~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~i 206 (422)
+.+.+..+...++ ++...+..+|+++||++|||++.+|+.++++++|||++|||+..+.|+|++++|+|+|||+|.||
T Consensus 82 ~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~v 159 (395)
T TIGR03204 82 SAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWT 159 (395)
T ss_pred hcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEee
Confidence 9998776544433 34457888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccEEEEEEEecC----CCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHH
Q 014583 207 GNSTFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (422)
Q Consensus 207 s~a~~ad~~~v~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~ 281 (422)
+|+..||+++|++++++ ..++++|+||.+.|||++.+...+.| +.+++.|.|+||+||++++||.. .++....
T Consensus 160 t~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~ 237 (395)
T TIGR03204 160 TLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAK 237 (395)
T ss_pred cCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 99999999999999753 24689999999999999987666555 67899999999999999999875 6788888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC-CChh
Q 014583 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE-KGA-MTPG 359 (422)
Q Consensus 282 ~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d-~~~-~~~~ 359 (422)
..+...|+++++ +|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++.++++++.... .+. ....
T Consensus 238 ~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~ 315 (395)
T TIGR03204 238 FLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNP 315 (395)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 888999988876 899999999999999999999999999999999999999999999999999975432 222 2345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH----------hCCccccCc----chHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 360 HASLGKSWITARARETVALGREL----------LGGNGILSD----FLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 360 ~~~~~K~~~~~~~~~v~~~~~~~----------~Gg~g~~~~----~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
.++++|.++++.+.++++.++|+ |||.||.++ ++++++|||++...+++++++++...+.+
T Consensus 316 ~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~ 390 (395)
T TIGR03204 316 ASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAK 390 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHH
Confidence 79999999999999999999985 889999865 47999999999999888888877766543
No 27
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.5e-60 Score=455.39 Aligned_cols=374 Identities=24% Similarity=0.327 Sum_probs=342.5
Q ss_pred CCcccCccCCCHHHHHHHHHHHHHHHhhccc--cHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHH
Q 014583 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAI 122 (422)
Q Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~ 122 (422)
.|.+.+++.++.|+.++.+.+-..+++.+.. .....|+....++..++.|+++|+|++.+ ++|||.|+...++..+.
T Consensus 67 k~v~~yPev~~~e~~~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~ 146 (634)
T KOG0137|consen 67 KDVFPYPEVITSEQKELLEQFVLPLERFFEEVNDSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLF 146 (634)
T ss_pred hhhcCCcccCcHHHHHHHHhhhhhHHHhhhccchhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHh
Confidence 4667788889999887765554444443221 23456778899999999999999999988 99999999999999999
Q ss_pred HHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEE--ECCEEEEE
Q 014583 123 AEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILE 200 (422)
Q Consensus 123 e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~--~~~~~~Ln 200 (422)
|.++.+|.++++.++.|.++..-.|..+|+++||++|||++.+|+.+++||+|||..|||.....|+|+. |++.|+||
T Consensus 147 e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN 226 (634)
T KOG0137|consen 147 EIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN 226 (634)
T ss_pred hccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEc
Confidence 9999889999999999998888899999999999999999999999999999999999999999999998 55669999
Q ss_pred eEeeecCCCCcccEEEEEEEecCC-------CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCC
Q 014583 201 GQKRWIGNSTFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (422)
Q Consensus 201 G~K~~is~a~~ad~~~v~a~~~~~-------~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~ 273 (422)
|.|.||+|+..||+++|||+++.+ +++++|||+++..|++-.+...+||.+|+.+++|+|+||.||.+|+||.
T Consensus 227 G~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~ 306 (634)
T KOG0137|consen 227 GSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGK 306 (634)
T ss_pred CeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCC
Confidence 999999999999999999999632 5789999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014583 274 V-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE 352 (422)
Q Consensus 274 ~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d 352 (422)
+ +|+++++..++.+|+..++..+|.++++++.+.+|+.+|+|||++|.++..+|+++++|..++|++++++|..+..+|
T Consensus 307 ~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D 386 (634)
T KOG0137|consen 307 PGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMD 386 (634)
T ss_pred CCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7 899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC--CCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHh
Q 014583 353 KG--AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYL 419 (422)
Q Consensus 353 ~~--~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~ 419 (422)
+. ..-..++++.|+|+.+.+..++++++|++||+||+.+++++|.+||++.++++++.++++.--++
T Consensus 387 ~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiA 455 (634)
T KOG0137|consen 387 EVGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIA 455 (634)
T ss_pred cccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHH
Confidence 82 45566899999999999999999999999999999999999999999999999999998865544
No 28
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=4.9e-57 Score=484.07 Aligned_cols=369 Identities=18% Similarity=0.185 Sum_probs=326.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-------CCC-HHHHHHHH-hcccccccc-cc---------------
Q 014583 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGGTI-KG--------------- 107 (422)
Q Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~-~~Gl~~~~~-~~--------------- 107 (422)
+.+++++.++++++++|+++++.|...++++.. .+| .+.|+++. ++||+++.+ ++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 567899999999999999999998877766432 377 68888885 999999987 53
Q ss_pred ---------cCCCCCCHHHHHHHHHHHHhcCchh-hHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCC
Q 014583 108 ---------YGCPGHSVTGAAIAIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177 (422)
Q Consensus 108 ---------~GG~g~~~~~~~~~~e~la~~d~s~-~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~ 177 (422)
+||.|++..+.+.++|++++++.+. ......|.+.++..|..+|+++||++||+++.+|++++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999986432 221223333344578899999999999999999999999999999
Q ss_pred C-CCCCcCCCeeEEEEECCEEEEEeEeeecCCC--CcccEEEEEEEecCC----CCeEEEEEeCCCCCeeeecccCcccc
Q 014583 178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGL 250 (422)
Q Consensus 178 ~-~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a--~~ad~~~v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~Gl 250 (422)
+ +|||+.++.|+|++++|+|+|||+|+||||+ +.||+++|+|+++++ +++++|+||.+.|||++.+.|+++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 6899999999999999999999999999999 569999999997532 46789999999999999999999999
Q ss_pred ccc--cceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhH
Q 014583 251 RIV--QNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQ 327 (422)
Q Consensus 251 ~~~--~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq 327 (422)
+++ ++++|+|+||+||++++|+.. .++......+..+|+..++.++|++++|++.+++|+++|++||+||.++|.+|
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq 719 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFL 719 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHH
Confidence 984 588999999999999999765 57888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccc
Q 014583 328 QKLVQMLGNIQAMILVGWRLCKLYEKGA--MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHL 405 (422)
Q Consensus 328 ~~La~~~~~~~a~~~~~~~~a~~~d~~~--~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~ 405 (422)
++|++|.+++++++++++.++..+|... .....++++|+++++.+.++++.|+|+|||+||..+++++|+|||++..+
T Consensus 720 ~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~ 799 (822)
T PLN02876 720 SDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLR 799 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcc
Confidence 9999999999999999999999988732 23457889999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhc
Q 014583 406 DHFVCKNLIVSNYLKL 421 (422)
Q Consensus 406 ~~~~~~~~~~~~~~~l 421 (422)
+++|+.+++...+.+.
T Consensus 800 i~~Gt~e~~~~~ia~~ 815 (822)
T PLN02876 800 IADGPDEVHLGTIAKL 815 (822)
T ss_pred cccChHHHHHHHHHHH
Confidence 9999888888776654
No 29
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7.9e-57 Score=445.08 Aligned_cols=356 Identities=26% Similarity=0.316 Sum_probs=315.5
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHH-----HHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCc
Q 014583 57 SEEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (422)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~ 130 (422)
++++++++.+++|+++++.|....+ ++.+.+|.+.+++|+++||+++.+ ++|||.|.+..+.+.+++++++.|.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 3577899999999999988876533 345678999999999999999987 9999999999999999999999998
Q ss_pred hhhHH-HHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCC
Q 014583 131 SCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (422)
Q Consensus 131 s~~~~-~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a 209 (422)
++++. +.+| .+...+..+|+++|+++||+++.+|+.++++++|||++|||...+.|++++++|+|+|||.|+||||+
T Consensus 81 ~~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~ 158 (380)
T cd01152 81 PVPFNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGA 158 (380)
T ss_pred CcccchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCc
Confidence 88875 4433 34567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEEEEecCC----CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHh
Q 014583 210 TFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (422)
Q Consensus 210 ~~ad~~~v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l 284 (422)
.++|+++|+|+++++ +++.+|+||++.||+++.+.|+++| +++++.+.|+||+||.+++|+.. .++......+
T Consensus 159 ~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l 236 (380)
T cd01152 159 HYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTL 236 (380)
T ss_pred cccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHH
Confidence 999999999997542 4688999999999999999998888 66889999999999999999875 5777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHH
Q 014583 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (422)
Q Consensus 285 ~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~ 364 (422)
...|+..++. +.++++.+++|+++|.+||+||.++|.+|++|++|.+++++++++++.+++.++.+......++++
T Consensus 237 ~~~r~~~~~~----~~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~a 312 (380)
T cd01152 237 NFERVSIGGS----AATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIA 312 (380)
T ss_pred Hhcccccchh----hhHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 7778776554 455555777888899999999999999999999999999999999999999998765555678999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccCc--------chHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 365 KSWITARARETVALGRELLGGNGILSD--------FLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 365 K~~~~~~~~~v~~~~~~~~Gg~g~~~~--------~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
|+++++.+.++++.+++++||.||.++ ++++|+|||++...+++++++.+...+.+
T Consensus 313 K~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~ 376 (380)
T cd01152 313 KLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAE 376 (380)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHH
Confidence 999999999999999999999999988 79999999999999999999888876654
No 30
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-56 Score=457.94 Aligned_cols=358 Identities=16% Similarity=0.168 Sum_probs=313.3
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCC---------C---HHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHH
Q 014583 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (422)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e 123 (422)
+.-..+++.+++|+++++.|...+.|+++.+ | .+.|+++.+.||+++.+ ++|||.|++......+.|
T Consensus 58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E 137 (622)
T PTZ00456 58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE 137 (622)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence 3456789999999999999998888876543 5 48999999999999987 999999999875555555
Q ss_pred HHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECC-EEEEEeE
Q 014583 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQ 202 (422)
Q Consensus 124 ~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~-~~~LnG~ 202 (422)
.++..++++++....+. .+...|..+|+++||++|||++.+|++++++++|||++|||+..+.|+|++++| +|+|||+
T Consensus 138 ~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~ 216 (622)
T PTZ00456 138 LMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT 216 (622)
T ss_pred HHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence 56777877665545443 245678999999999999999999999999999999999999999999999887 5999999
Q ss_pred eeecCCCCcc----cEEEEEEEecC----CCCeEEEEEeCCC----------CCeeeecccCccccccccceeEEEceee
Q 014583 203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVF 264 (422)
Q Consensus 203 K~~is~a~~a----d~~~v~a~~~~----~~~~~~flV~~~~----------~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~ 264 (422)
|.|||++.++ ++++|+||+++ .+++++|+||++. +||++.++++|+|+++++++.+.|+|
T Consensus 217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~-- 294 (622)
T PTZ00456 217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN-- 294 (622)
T ss_pred EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC--
Confidence 9999999763 67899999864 2689999999864 47888888999999999999999999
Q ss_pred cCCCCCCCCC-CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------------CcccccchhhHHHHH
Q 014583 265 VPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF------------GAPLAAFQINQQKLV 331 (422)
Q Consensus 265 Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~f------------g~~l~~~~~vq~~La 331 (422)
|.+++||.+ +++......++..|+.+++.++|+++++++.+++|+++|+|| ++||+++|.||++|+
T Consensus 295 -~~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~ 373 (622)
T PTZ00456 295 -SVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNIL 373 (622)
T ss_pred -hhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHH
Confidence 467899886 688888899999999999999999999999999999999984 788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--C-----------hhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHH
Q 014583 332 QMLGNIQAMILVGWRLCKLYEKGAM--T-----------PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVI 398 (422)
Q Consensus 332 ~~~~~~~a~~~~~~~~a~~~d~~~~--~-----------~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~ 398 (422)
+|.+.++++++++++++..+|.... . ...++++|+++++.+.++++.++|+|||+||+.+++++|+|
T Consensus 374 ~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~ 453 (622)
T PTZ00456 374 FAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQIL 453 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHH
Confidence 9999999999999999999886421 1 22477999999999999999999999999999999999999
Q ss_pred hhhhccccHHHHHHHHHHHH
Q 014583 399 MLFFLHLDHFVCKNLIVSNY 418 (422)
Q Consensus 399 rD~~~~~~~~~~~~~~~~~~ 418 (422)
||++..+++++++++...++
T Consensus 454 RDari~~i~eGt~~iq~~dl 473 (622)
T PTZ00456 454 RDARIGTLYEGTTGIQALDF 473 (622)
T ss_pred HHhhcccccCChHHHHHHHH
Confidence 99999999999888776543
No 31
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2e-56 Score=441.98 Aligned_cols=348 Identities=19% Similarity=0.217 Sum_probs=306.3
Q ss_pred HHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHhhHH
Q 014583 65 KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA 143 (422)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~~~h~~~~ 143 (422)
+++++.+. +.|.+.++|+.+.+|.+.|+.|++.||+++.+ ++|||.|+++.+...+++++++.|+++++.+.+|.. +
T Consensus 2 ~~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~ 79 (377)
T cd01163 2 RARPLAAR-IAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-F 79 (377)
T ss_pred hHHHHHHH-HhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-H
Confidence 45666664 78888899999999999999999999999987 999999999999999999999999999998888875 4
Q ss_pred HHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCcccEEEEEEEecC
Q 014583 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223 (422)
Q Consensus 144 ~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad~~~v~a~~~~ 223 (422)
...+..+|+++||++|++++.+|++++ .++|||++|+ +....+++++++|||+|||+|.||||+.+||+++|++++++
T Consensus 80 ~~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~ 157 (377)
T cd01163 80 VEALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE 157 (377)
T ss_pred HHHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC
Confidence 567888999999999999999999665 5999999876 66677778888899999999999999999999999999764
Q ss_pred CCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCCC-CHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 014583 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGISMGV 302 (422)
Q Consensus 224 ~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~~-~~~~~~~~l~~~r~~~aa~~~G~a~~a 302 (422)
++..+|+||.+.|||++.+.|+++|+++++++.|+|+||+||++++|+... ++. ....+...|+.+++.++|+++++
T Consensus 158 -~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~a 235 (377)
T cd01163 158 -GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAA 235 (377)
T ss_pred -CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999998753 332 22344577899999999999999
Q ss_pred HHHHHHHHhhhh-hcCc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ChhhhhHHH
Q 014583 303 YDMCHRYLKERK-QFGA----PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM------------TPGHASLGK 365 (422)
Q Consensus 303 l~~a~~y~~~R~-~fg~----~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~------------~~~~~~~~K 365 (422)
++.+++|+++|+ +||+ ++.++|.+|++|++|.+++++++++++.++..+|.+.. ....++++|
T Consensus 236 l~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK 315 (377)
T cd01163 236 LDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAK 315 (377)
T ss_pred HHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 999999999995 7876 57899999999999999999999999999998886411 123567999
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHH--HHHHHHHHH
Q 014583 366 SWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFV--CKNLIVSNY 418 (422)
Q Consensus 366 ~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~--~~~~~~~~~ 418 (422)
+++++.+.++++.|+++|||.||..+++++|+|||++..+.|.. +...++.++
T Consensus 316 ~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~~~~~~~~~~ 370 (377)
T cd01163 316 VVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVIYKERAVGDY 370 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHHHHHHHhchh
Confidence 99999999999999999999999999999999999999998844 445555554
No 32
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=3.2e-54 Score=430.28 Aligned_cols=347 Identities=20% Similarity=0.259 Sum_probs=305.3
Q ss_pred HHHHHHHhhccccHHHHHHhCC------CC---HHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhH
Q 014583 65 KVRECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCST 134 (422)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~ 134 (422)
...++++.+ .|...++|+.++ +| .++++++.+.|++++ + ..+|+.| ......+.+.++..+.+.++
T Consensus 36 ~~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 111 (418)
T cd01154 36 ELARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLC 111 (418)
T ss_pred HHHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccC
Confidence 334456665 788888888777 78 778999999999998 4 5566544 34444566777777777777
Q ss_pred HHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCc----ceeEEeecCCCCCCCcCCCeeEEEEE-CCEEEEEeEeeecCCC
Q 014583 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 209 (422)
Q Consensus 135 ~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~----~~~~~a~tE~~~Gs~~~~~~t~a~~~-~~~~~LnG~K~~is~a 209 (422)
.+.+|.. +...|..+|+++|+ +|||++.+|+ +++|+++|||++|||+.+++|+|+++ +|+|+|||+|+|+|++
T Consensus 112 p~~~~~~-~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a 189 (418)
T cd01154 112 PLTMTDA-AVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP 189 (418)
T ss_pred cHHHHHH-HHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc
Confidence 7667774 77889999998875 6999999997 89999999999999999999999999 8999999999999999
Q ss_pred CcccEEEEEEEecCC----CCeEEEEEeCCCC-----CeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHH
Q 014583 210 TFADVLVIFARNTTT----NQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQD 279 (422)
Q Consensus 210 ~~ad~~~v~a~~~~~----~~~~~flV~~~~~-----Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~ 279 (422)
.||+++|+|+++++ +++++|+||++.| ||++.+.|+++|++++++++|.|+||+ +++||.. .++..
T Consensus 190 -~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~ 265 (418)
T cd01154 190 -LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYY 265 (418)
T ss_pred -ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHH
Confidence 99999999998642 6899999999875 999999999999999999999999983 7889875 68888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--
Q 014583 280 TSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT-- 357 (422)
Q Consensus 280 ~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~-- 357 (422)
....++..|+.+++.++|+++++++.+++|+++|++||++|.++|.+|++|++|.++++++++++++++..++.....
T Consensus 266 ~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~ 345 (418)
T cd01154 266 ILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKP 345 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999988863211
Q ss_pred ------hhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhhc
Q 014583 358 ------PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL 421 (422)
Q Consensus 358 ------~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~l 421 (422)
...++++|+++++.+.++++.|++++||+||..+++++|+|||+++.++++|+.+++..++++.
T Consensus 346 ~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~ 415 (418)
T cd01154 346 VEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRV 415 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHH
Confidence 1246779999999999999999999999999999999999999999999999999999998875
No 33
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.2e-54 Score=449.07 Aligned_cols=307 Identities=23% Similarity=0.260 Sum_probs=277.0
Q ss_pred CHHHHHHHHHHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEE
Q 014583 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV 193 (422)
Q Consensus 114 ~~~~~~~~~e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~ 193 (422)
++.+...+.|++++.|++++..+++|+++++..|..+||++|+++|||++.+|++++|+++|||+||||+.+++|||+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67888889999999999988888899989999999999999999999999999999999999999999999999999998
Q ss_pred C--CEEEEE-----eEeeecCCCCc-ccEEEEEEEecC---CCCeEEEEEeCC-------CCCeeeecccCccccccccc
Q 014583 194 E--GGWILE-----GQKRWIGNSTF-ADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN 255 (422)
Q Consensus 194 ~--~~~~Ln-----G~K~~is~a~~-ad~~~v~a~~~~---~~~~~~flV~~~-------~~Gv~~~~~~~~~Gl~~~~~ 255 (422)
+ |+|+|| |+|+||+|++. |++++|+|++.. +.|+++|+||.+ .|||++.++++|+|++++++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 899999 99999999864 999999999742 368999999974 39999999999999999999
Q ss_pred eeEEEceeecCCCCCCCC----------------C-CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc
Q 014583 256 GDILLKKVFVPDEDRLPG----------------V-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA 318 (422)
Q Consensus 256 ~~l~f~~v~Vp~~~~l~~----------------~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~ 318 (422)
+.+.|+||+||++++|+. + .++......+..+|+.+++.++|.+++|+++|++|++.|+|||+
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999975 1 34566677888999999999999999999999999999999999
Q ss_pred c-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHcC-----CCChhhhhHHHHHHHHHHHHHHHHH
Q 014583 319 P-------LAAFQINQQKLVQMLGNIQAMILVGWRLCKL-------YEKG-----AMTPGHASLGKSWITARARETVALG 379 (422)
Q Consensus 319 ~-------l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~-------~d~~-----~~~~~~~~~~K~~~~~~~~~v~~~~ 379 (422)
| |++||.+|++|++|++++++++.....+... .+++ ++.+..++++|+++++.+.++++.|
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~ 399 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQEC 399 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999887655544332 2222 1234578999999999999999999
Q ss_pred HHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 380 RELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 380 ~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
+|+|||+||+.++++++++||++..++++|+++++..++.+
T Consensus 400 rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar 440 (610)
T cd01150 400 REACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTAN 440 (610)
T ss_pred HHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHH
Confidence 99999999999999999999999999999999999988765
No 34
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.8e-54 Score=442.34 Aligned_cols=292 Identities=20% Similarity=0.275 Sum_probs=265.0
Q ss_pred CchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEE--CCEEEEE-----e
Q 014583 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----G 201 (422)
Q Consensus 129 d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~Ln-----G 201 (422)
+++....+++|++++...|..+||++||++|||++.+|++++|||+|||+||||+.+++|||+++ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 45555567788888888999999999999999999999999999999999999999999999996 6889998 9
Q ss_pred EeeecCC-CCcccEEEEEEEecC---CCCeEEEEEeCC-------CCCeeeecccCccccccccceeEEEceeecCCCCC
Q 014583 202 QKRWIGN-STFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270 (422)
Q Consensus 202 ~K~~is~-a~~ad~~~v~a~~~~---~~~~~~flV~~~-------~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~ 270 (422)
+|+||+| +..||+++|+|++.. +.|+++|+||.+ .|||++.+++.|+|+++++++.+.|+||+||++++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999998 578999999999853 368999999943 49999999999999999999999999999999999
Q ss_pred CCC-------CC----C-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc------ccccchhhHHHHHH
Q 014583 271 LPG-------VN----S-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA------PLAAFQINQQKLVQ 332 (422)
Q Consensus 271 l~~-------~~----~-~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~------~l~~~~~vq~~La~ 332 (422)
||. +. + ++.....+..+|+.+++.++|++++|++.|++|+++|+|||+ ||++||.+|++|++
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~ 327 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLP 327 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHH
Confidence 985 21 3 567778888999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC------CC------ChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhh
Q 014583 333 MLGNIQAMILVGWRLCKLYEKG------AM------TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIML 400 (422)
Q Consensus 333 ~~~~~~a~~~~~~~~a~~~d~~------~~------~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD 400 (422)
|++++++++.+++++++.+++. .. .+..++++|+++++.+.+++++|+|+|||+||+.+++++++|||
T Consensus 328 ~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd 407 (646)
T PTZ00460 328 LLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFD 407 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHH
Confidence 9999999999999999888742 11 24568999999999999999999999999999999999999999
Q ss_pred hhccccHHHHHHHHHHHHhh
Q 014583 401 FFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~ 420 (422)
++..++++|.++++..++.+
T Consensus 408 a~~~~t~eG~n~vl~~~iar 427 (646)
T PTZ00460 408 MSPNITLEGENQIMYLQLAR 427 (646)
T ss_pred hccceeecCcHHHHHHHHHH
Confidence 99999999999998877654
No 35
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-53 Score=407.03 Aligned_cols=371 Identities=23% Similarity=0.290 Sum_probs=321.5
Q ss_pred CCCcccCccCCCHHH--HHHHHHHHHHHHhhc----cccHH-HHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHH
Q 014583 45 ASDYYQFDDLLTSEE--QAVRMKVRECMEKEI----APIMA-EYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVT 116 (422)
Q Consensus 45 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~ 116 (422)
.+|...+...++.++ ..++.++..+++..- .|... -.|+.+++-...|..|.+.|.+.... +. + --+..
T Consensus 29 ~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~r~~~l~~~gv~~~~~~~~-~--~~~~~ 105 (661)
T KOG0135|consen 29 TFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMKRIKRLVELGVFKFWLVED-G--PEAEL 105 (661)
T ss_pred CCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHHHHHHHHHhccCcceeecC-c--hHHHH
Confidence 467777777777664 667888888887742 12221 24566777778888999888888755 33 1 11456
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEE--C
Q 014583 117 GAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--E 194 (422)
Q Consensus 117 ~~~~~~e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~ 194 (422)
.+..+.|.++.+|.|++..+++|+.+++.++..+||+.+++ |+..+.+.+++|||||||.+||||+.+++|||++| .
T Consensus 106 k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t 184 (661)
T KOG0135|consen 106 KKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTT 184 (661)
T ss_pred HHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCC
Confidence 78889999999999999999999999999999999999999 99999999999999999999999999999999998 6
Q ss_pred CEEEEE-----eEeeecCCCC-cccEEEEEEEec---CCCCeEEEEEeCC-------CCCeeeecccCccccccccceeE
Q 014583 195 GGWILE-----GQKRWIGNST-FADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDI 258 (422)
Q Consensus 195 ~~~~Ln-----G~K~~is~a~-~ad~~~v~a~~~---~~~~~~~flV~~~-------~~Gv~~~~~~~~~Gl~~~~~~~l 258 (422)
++|||| ..|+||+|++ +|++.+|+|++. .+.|++.||||.+ .|||+|.++.+|.|++|++||.+
T Consensus 185 ~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l 264 (661)
T KOG0135|consen 185 EEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFL 264 (661)
T ss_pred CeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccCceE
Confidence 899999 6899999975 699999999983 2479999999975 78999999999999999999999
Q ss_pred EEceeecCCCCCCCCCCC-----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc---
Q 014583 259 LLKKVFVPDEDRLPGVNS-----------------FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA--- 318 (422)
Q Consensus 259 ~f~~v~Vp~~~~l~~~~~-----------------~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~--- 318 (422)
+|+|||||++|+|....+ |......|..+|++++..++|.++-++.+|++|+..|+|||.
T Consensus 265 ~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~ 344 (661)
T KOG0135|consen 265 WFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKN 344 (661)
T ss_pred EEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCC
Confidence 999999999999954211 123446678999999999999999999999999999999985
Q ss_pred ----ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCChhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 014583 319 ----PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK----------GAMTPGHASLGKSWITARARETVALGRELLG 384 (422)
Q Consensus 319 ----~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~----------~~~~~~~~~~~K~~~~~~~~~v~~~~~~~~G 384 (422)
+|.+||.+|+||.++++..++++....++...+.+ .++.++.++.+|.++||...+++++|++.||
T Consensus 345 geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecREAcG 424 (661)
T KOG0135|consen 345 GEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECREACG 424 (661)
T ss_pred CCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHHHhc
Confidence 58899999999999999999999999888887764 2455677899999999999999999999999
Q ss_pred CccccCcchHHHHHhhhhccccHHHHHHHHHHHHh
Q 014583 385 GNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYL 419 (422)
Q Consensus 385 g~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~ 419 (422)
|+||+.+|.++.+--|-..+++++|+|+++.++.-
T Consensus 425 GhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvs 459 (661)
T KOG0135|consen 425 GHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVS 459 (661)
T ss_pred cchHHHHHHhcccccCCCccceeecCceeHHHHHH
Confidence 99999999999999999999999999999998764
No 36
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.6e-51 Score=424.25 Aligned_cols=287 Identities=24% Similarity=0.338 Sum_probs=255.6
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEE--CCEEEEE-----eEeeec
Q 014583 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWI 206 (422)
Q Consensus 134 ~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~--~~~~~Ln-----G~K~~i 206 (422)
..+.+|+++++..|..+||++||++|||++.+|++++|||+|||+||||+.+++|||+++ +|+|+|| |+|+||
T Consensus 97 ~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wi 176 (664)
T PLN02443 97 GYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWP 176 (664)
T ss_pred eeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEee
Confidence 345688888888999999999999999999999999999999999999999999999998 6889998 999999
Q ss_pred CCC-CcccEEEEEEEecC---CCCeEEEEEeCC-------CCCeeeecccCccc---cccccceeEEEceeecCCCCCCC
Q 014583 207 GNS-TFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLP 272 (422)
Q Consensus 207 s~a-~~ad~~~v~a~~~~---~~~~~~flV~~~-------~~Gv~~~~~~~~~G---l~~~~~~~l~f~~v~Vp~~~~l~ 272 (422)
+|+ ..||+++|+|++.. +.|++.|+||.+ .|||++.++++|+| +++++++.|.|+||+||++++|+
T Consensus 177 g~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg 256 (664)
T PLN02443 177 GGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLM 256 (664)
T ss_pred cCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCC
Confidence 997 67999999999742 368999999986 89999999999999 66799999999999999999997
Q ss_pred CC-----CC--H------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccc-------cchhhHHHHHH
Q 014583 273 GV-----NS--F------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLA-------AFQINQQKLVQ 332 (422)
Q Consensus 273 ~~-----~~--~------~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~-------~~~~vq~~La~ 332 (422)
.. ++ . +.....+..+|+.+++.++|.+++|+++|++|+.+|+|||.|++ +||.+|++|++
T Consensus 257 ~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~ 336 (664)
T PLN02443 257 RLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFP 336 (664)
T ss_pred cccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHH
Confidence 52 11 1 23446778899999999999999999999999999999999876 56666999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-------CC-----CChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhh
Q 014583 333 MLGNIQAMILVGWRLCKLYEK-------GA-----MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIML 400 (422)
Q Consensus 333 ~~~~~~a~~~~~~~~a~~~d~-------~~-----~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD 400 (422)
|++.+++++.+.+.+++.+++ +. ..+..++++|+++++.+.+++++|+|+|||+||+.+++++++++|
T Consensus 337 ~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d 416 (664)
T PLN02443 337 LLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAV 416 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhh
Confidence 999999999999999887763 11 123347899999999999999999999999999999999999999
Q ss_pred hhccccHHHHHHHHHHHHhh
Q 014583 401 FFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~ 420 (422)
++..++++|+++++..++.+
T Consensus 417 ~~~~~t~EGdn~Vl~~~iar 436 (664)
T PLN02443 417 YVPACTYEGDNVVLLLQVAR 436 (664)
T ss_pred hhcceeecCcHHHHHHHHHH
Confidence 99999999999998887764
No 37
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=2.7e-50 Score=390.81 Aligned_cols=320 Identities=32% Similarity=0.461 Sum_probs=290.2
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcCchhhHHHH
Q 014583 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL 137 (422)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~~ 137 (422)
++..+++.+++|+.+++.|.....++. +...|+.+.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~------------------------------------ 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRET---PEEPWELLAELGLL------------------------------------ 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHhh---CCCCHHHHHHHHHH------------------------------------
Confidence 567899999999999988887755554 44455666666655
Q ss_pred HHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCcccEEEE
Q 014583 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (422)
Q Consensus 138 ~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad~~~v 217 (422)
+++.+|..+|+++||++||+.+.+|+.++++++|||++|||...+.+++++++|||+|||+|+|+|++..||+++|
T Consensus 43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv 118 (327)
T cd00567 43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV 118 (327)
T ss_pred ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence 3445788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC----CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHHHHH
Q 014583 218 FARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVA 292 (422)
Q Consensus 218 ~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~a 292 (422)
+++++++ .++.+|+||.+.|||++.+.|+++|+++++++.+.|+||+||++++|+.. .++......+...|+.++
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~a 198 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLA 198 (327)
T ss_pred EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 9998642 46889999999999999999999999999999999999999999999875 566677788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhhHHHHHHHHH
Q 014583 293 WQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLGKSWITAR 371 (422)
Q Consensus 293 a~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~-~~~~~~~~K~~~~~~ 371 (422)
+.++|+++++++.+++|+++|.+||+|+.++|.+|++|++|.+.+++++++++.+++.++.... ......++|+++++.
T Consensus 199 a~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~ 278 (327)
T cd00567 199 AVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEA 278 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 556788999999999
Q ss_pred HHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 372 ARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 372 ~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
+.++++.++++|||+||..+++++|+|||++.....+++.+.+..++.+
T Consensus 279 a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 279 AREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999988877654
No 38
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-50 Score=406.89 Aligned_cols=322 Identities=19% Similarity=0.219 Sum_probs=275.1
Q ss_pred HHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCc-
Q 014583 90 HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN- 167 (422)
Q Consensus 90 ~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~- 167 (422)
++++.+.+.|+.++.. +++| .+. ....+......+..++...+.+.+. .+...+..+++++||++|+|++.+|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg~~ 165 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-SGA-FVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSDRY 165 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-chH-HHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCCCc
Confidence 4556666788887766 5554 221 2222222222345555555444443 44556677789999999999999997
Q ss_pred ------------ceeEEeecCCCCCCCcCCCeeEEEE-ECCEEEEEeEeeecCCCCcccEEEEEEEecCCCCeEEEEEeC
Q 014583 168 ------------TIACWALTEPAYGSDASALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKK 234 (422)
Q Consensus 168 ------------~~~~~a~tE~~~Gs~~~~~~t~a~~-~~~~~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~~ 234 (422)
+++++++|||++|||+..++|+|++ ++|+|+|||+|+||| ++.||+++|+|+++ +++++|+||+
T Consensus 166 ~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp~ 242 (538)
T PRK11561 166 DSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVPR 242 (538)
T ss_pred ccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEEC
Confidence 4569999999999999999999999 567899999999999 58899999999996 6899999999
Q ss_pred CCC-----CeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014583 235 DAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHR 308 (422)
Q Consensus 235 ~~~-----Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 308 (422)
+.| ||++.+.++|+|++++++++|.|+||. +++||.. .|+......++..|+..++.++|+++++++.+++
T Consensus 243 ~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~ 319 (538)
T PRK11561 243 FLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIY 319 (538)
T ss_pred CCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 799999999999999999999999993 7899886 6898889999999999999999999999999999
Q ss_pred HHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------hhhhhHHHHHHHHHHHHHHHHHHHH
Q 014583 309 YLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT------PGHASLGKSWITARARETVALGREL 382 (422)
Q Consensus 309 y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~------~~~~~~~K~~~~~~~~~v~~~~~~~ 382 (422)
|+++|++||+||+++|.+|++|++|.++++++++++++++..+|.+... ....+++|.++++.+.+++++|+|+
T Consensus 320 yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv 399 (538)
T PRK11561 320 HAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAMEV 399 (538)
T ss_pred HHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999976421 1234689999999999999999999
Q ss_pred hCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhhc
Q 014583 383 LGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL 421 (422)
Q Consensus 383 ~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~l 421 (422)
+||+||+.+++++|+|||+++..+++|+.+++..++++-
T Consensus 400 ~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~ 438 (538)
T PRK11561 400 LGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRV 438 (538)
T ss_pred cCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999888887663
No 39
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=8.9e-51 Score=400.60 Aligned_cols=339 Identities=16% Similarity=0.137 Sum_probs=290.0
Q ss_pred HHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHhhHH
Q 014583 65 KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA 143 (422)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~~~h~~~~ 143 (422)
+++++.+. +.|.+.++|+++.||.+.|+.|++.||+++.+ ++|||.|+++.+...+.+++++.|+|+++.+..+. ..
T Consensus 2 ~~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~ 79 (370)
T cd01159 2 RAEDLAPL-IRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-TH 79 (370)
T ss_pred hHHHHHHH-HHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HH
Confidence 35566665 88889999999999999999999999999987 89999999999999999999999999987766554 45
Q ss_pred HHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCcccEEEEEEEecC
Q 014583 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223 (422)
Q Consensus 144 ~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad~~~v~a~~~~ 223 (422)
...+..+++++|++.|++.. .+...+ ..++.|+|++++|+|+|||+|.|||++..+|+++|+|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~g------------~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~ 146 (370)
T cd01159 80 SRMLAAFPPEAQEEVWGDGP-DTLLAG------------SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVED 146 (370)
T ss_pred HHHHHhCCHHHHHHHhCCCC-CceEEe------------eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCC
Confidence 56778889999999998742 111111 13456899999999999999999999999999999999754
Q ss_pred C---CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCCC-------CHH---HHHHHhHHHHHH
Q 014583 224 T---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-------SFQ---DTSKVLAVSRVM 290 (422)
Q Consensus 224 ~---~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~~-------~~~---~~~~~l~~~r~~ 290 (422)
+ .++++|+||++ ||++.+.|+++||++++++.++|+||+||++++|+..+ ++. .........|+.
T Consensus 147 ~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 224 (370)
T cd01159 147 DDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLS 224 (370)
T ss_pred CCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHH
Confidence 2 46899999987 99999999999999999999999999999999997532 211 122345678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc---CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CC---hh
Q 014583 291 VAWQPIGISMGVYDMCHRYLKERKQF---GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA-----MT---PG 359 (422)
Q Consensus 291 ~aa~~~G~a~~al~~a~~y~~~R~~f---g~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~-----~~---~~ 359 (422)
+++.++|+++++++.+++|+++|.+| |+||.++|.+|++|++|.+++++++.+++.+++.++.+. .. ..
T Consensus 225 ~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~ 304 (370)
T cd01159 225 FAAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERA 304 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999997 788999999999999999999999999999999888631 11 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHH-HHHHHHHhh
Q 014583 360 HASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCK-NLIVSNYLK 420 (422)
Q Consensus 360 ~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~-~~~~~~~~~ 420 (422)
.++++|+++++.+.++++.+++++||.||.++++++|+|||++....|++.+ +++..-+.+
T Consensus 305 ~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~ 366 (370)
T cd01159 305 RIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGR 366 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999888 766655544
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=9.9e-47 Score=377.90 Aligned_cols=287 Identities=21% Similarity=0.249 Sum_probs=260.4
Q ss_pred HHHhc-ccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeE
Q 014583 94 KLGAL-RVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171 (422)
Q Consensus 94 ~l~~~-Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~ 171 (422)
.++++ ||+++.+ ++|||.|++..++..++|++++.+.+....+..|.+++...+..+|+++||++|||++.+|+.+++
T Consensus 58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A 137 (520)
T PTZ00457 58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG 137 (520)
T ss_pred chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence 47799 9999987 999999999999999999999988777666667876777788889999999999999999999999
Q ss_pred EeecCCCCCCCcCCCeeEEEEE-CCEEEEEeEeeecCCCCcccEEEEEEEecC----------CCCeEEEEEeCCCCCee
Q 014583 172 WALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYLVKKDAPGLT 240 (422)
Q Consensus 172 ~a~tE~~~Gs~~~~~~t~a~~~-~~~~~LnG~K~~is~a~~ad~~~v~a~~~~----------~~~~~~flV~~~~~Gv~ 240 (422)
+++|| +.|||+..+.|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++ .+++++|+||.+.|||+
T Consensus 138 ~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVt 215 (520)
T PTZ00457 138 WATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS 215 (520)
T ss_pred EEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceE
Confidence 99988 8999999999999986 5689999999976 8899999999999742 13689999999999999
Q ss_pred eecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcc
Q 014583 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP 319 (422)
Q Consensus 241 ~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~ 319 (422)
+.. ++|+|||| |.+++||.. ++++.....++.+|+.+++.++|+++++++.+++|++
T Consensus 216 v~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-------- 273 (520)
T PTZ00457 216 VNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-------- 273 (520)
T ss_pred Eec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 963 69999997 999999876 7898999999999999999999999999999999986
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCChhhhhHHHHHHH---HHHHHHHHHHHHHhCCccccCcchHH
Q 014583 320 LAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-AMTPGHASLGKSWIT---ARARETVALGRELLGGNGILSDFLVA 395 (422)
Q Consensus 320 l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~-~~~~~~~~~~K~~~~---~~~~~v~~~~~~~~Gg~g~~~~~~~~ 395 (422)
+|.+|++|++|.+++++++++++.+++.+|.+ .+...+++++|+|++ +.+..++++++| +++|+|
T Consensus 274 ---~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E 342 (520)
T PTZ00457 274 ---EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLE 342 (520)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHH
Confidence 38999999999999999999999999999986 456889999999999 888888888877 899999
Q ss_pred HHHhhhhccccHHHHHHHHH
Q 014583 396 KVIMLFFLHLDHFVCKNLIV 415 (422)
Q Consensus 396 r~~rD~~~~~~~~~~~~~~~ 415 (422)
|++||+|.++++++.++++.
T Consensus 343 ~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 343 KCFANARLFLSMMESRDFLY 362 (520)
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999887
No 41
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.4e-49 Score=348.59 Aligned_cols=330 Identities=19% Similarity=0.219 Sum_probs=289.8
Q ss_pred HHHHHHH----hcccccccc----cccCCCCCCHHHHHHHHHHHHhcCc-hhhHHHHHHhhHHHHHHHhcCCHHHHHhhh
Q 014583 90 HVIPKLG----ALRVAGGTI----KGYGCPGHSVTGAAIAIAEIARVDA-SCSTFILVHSSLAMLTIALCGSEEQKQKYL 160 (422)
Q Consensus 90 ~~~~~l~----~~Gl~~~~~----~~~GG~g~~~~~~~~~~e~la~~d~-s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l 160 (422)
..+++|+ ..|+|++++ ..|| .|++..++..++|.+++.-. +--+......+-.+..+..||++|||.+||
T Consensus 27 p~iekLKE~aK~eGlWNLFlp~~~qkyg-~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL 105 (392)
T KOG1469|consen 27 PVIEKLKEMAKVEGLWNLFLPAVSQKYG-AGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWL 105 (392)
T ss_pred chHHHHHHHHHhcchHHhhhHHHHHhhc-cCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHh
Confidence 4555554 479999865 3454 89999999999999997642 212222233344567899999999999999
Q ss_pred hhhhcCcceeEEeecCCCC-CCCcCCCeeEEEEECCEEEEEeEeeecCCCC--cccEEEEEEEecCC-----CCeEEEEE
Q 014583 161 PSLAQLNTIACWALTEPAY-GSDASALNTTATKVEGGWILEGQKRWIGNST--FADVLVIFARNTTT-----NQINGYLV 232 (422)
Q Consensus 161 ~~~~~g~~~~~~a~tE~~~-Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~--~ad~~~v~a~~~~~-----~~~~~flV 232 (422)
-++.+|++..||+||||.. .||..++++..++++|.|+|||.|||+||+. -|.+.+++.+++.. .+.++.+|
T Consensus 106 ~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLV 185 (392)
T KOG1469|consen 106 IPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILV 185 (392)
T ss_pred HHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEE
Confidence 9999999999999999996 7899999999999999999999999999985 48899999998754 46789999
Q ss_pred eCCCCCeeeecccCccccccc--cceeEEEceeecCCCCCC-CCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014583 233 KKDAPGLTVTKIENKIGLRIV--QNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (422)
Q Consensus 233 ~~~~~Gv~~~~~~~~~Gl~~~--~~~~l~f~~v~Vp~~~~l-~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 309 (422)
|.++|||++.++.+.+|.... ++.+|+|+||+||..|+| |++.||.+.+..|..+|+..|+-.+|.++++++...+.
T Consensus 186 pM~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R 265 (392)
T KOG1469|consen 186 PMNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKER 265 (392)
T ss_pred ecCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999888888755 568999999999999987 66689999999999999999999999999999999999
Q ss_pred HhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCChhhhhHHHHHHHHHHHHHHHHHHHHhCCcc
Q 014583 310 LKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK--GAMTPGHASLGKSWITARARETVALGRELLGGNG 387 (422)
Q Consensus 310 ~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~--~~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g 387 (422)
+.+|..||++|..+..+.+.|++...+++.+|+++..+++.+|. .+....+.+|.|+.+...+.++++.++|.+||.|
T Consensus 266 ~~sRiaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG 345 (392)
T KOG1469|consen 266 ALSRIAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAG 345 (392)
T ss_pred HHHHHHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999997 4556678999999999999999999999999999
Q ss_pred ccCcchHHHHHhhhhccccHHHHHHHHHHHHhh
Q 014583 388 ILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 388 ~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~ 420 (422)
...+.++.++|.-+++.+..+++++.-...+.+
T Consensus 346 ~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~ 378 (392)
T KOG1469|consen 346 VSSDTPLANLYAIARVLRIADGPDEVHLSAIAK 378 (392)
T ss_pred CCCCceeeEEEEEeeeEEeccCCCccchhhhhh
Confidence 999999999999999999887777766665554
No 42
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=304.07 Aligned_cols=292 Identities=21% Similarity=0.239 Sum_probs=252.7
Q ss_pred CchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEEC--CEEEEE-----e
Q 014583 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----G 201 (422)
Q Consensus 129 d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~--~~~~Ln-----G 201 (422)
...-+..+.+|+++....|...||+||.++||++-.+.+++||+|.||.+||+++++++|+|++|. +.|+|| .
T Consensus 104 ~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta 183 (670)
T KOG0136|consen 104 LGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTA 183 (670)
T ss_pred cccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcce
Confidence 344456678999999999999999999999999999999999999999999999999999999975 679998 7
Q ss_pred EeeecCCCC-cccEEEEEEEec---CCCCeEEEEEeCC-------CCCeeeecccCccccccccceeEEEceeecCCCCC
Q 014583 202 QKRWIGNST-FADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270 (422)
Q Consensus 202 ~K~~is~a~-~ad~~~v~a~~~---~~~~~~~flV~~~-------~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~ 270 (422)
.|||.++.+ .|+|.+|.|++- ...|++.|+||.+ .|||++.++..|||.+|++||.+.|+||+||++|+
T Consensus 184 ~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nm 263 (670)
T KOG0136|consen 184 TKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNM 263 (670)
T ss_pred ecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhh
Confidence 899999975 489999999983 2368999999975 78999999999999999999999999999999999
Q ss_pred CCCC-----CCH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-------cccccchhhHHHHH
Q 014583 271 LPGV-----NSF-------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFG-------APLAAFQINQQKLV 331 (422)
Q Consensus 271 l~~~-----~~~-------~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg-------~~l~~~~~vq~~La 331 (422)
|... +|- +.....+-..|..+..-..-..-.|..+|++|+..|+|+. ..|.|||..|.||.
T Consensus 264 Lmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlF 343 (670)
T KOG0136|consen 264 LMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLF 343 (670)
T ss_pred hhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHh
Confidence 9542 111 2222334445666666666666778899999999999983 35899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc-------C-----CCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHh
Q 014583 332 QMLGNIQAMILVGWRLCKLYEK-------G-----AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIM 399 (422)
Q Consensus 332 ~~~~~~~a~~~~~~~~a~~~d~-------~-----~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~r 399 (422)
+.+++.+|.+.....+.+.+.. + ++.+..++.+|+++++.+.+-+..|+..|||+||+.-+.+..+|-
T Consensus 344 P~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~ 423 (670)
T KOG0136|consen 344 PQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYG 423 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCcccee
Confidence 9999999999888888777653 2 345667889999999999999999999999999999999999999
Q ss_pred hhhccccHHHHHHHHHHHHhh
Q 014583 400 LFFLHLDHFVCKNLIVSNYLK 420 (422)
Q Consensus 400 D~~~~~~~~~~~~~~~~~~~~ 420 (422)
++-..++++|.|.++.-|++|
T Consensus 424 ~~v~~CTYEGEN~VmlLQ~AR 444 (670)
T KOG0136|consen 424 VAVGACTYEGENTVLLLQVAR 444 (670)
T ss_pred eeeeeeeeeccceeehHHHHH
Confidence 999999999999999988876
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.96 E-value=3.5e-27 Score=236.20 Aligned_cols=235 Identities=19% Similarity=0.208 Sum_probs=195.6
Q ss_pred HhcCCH--HHHHhhhhhhhcCcceeEEeecCCCC-CC----CcCC--CeeEE-EEECCEEEEEeEeeecCCCCcccEEEE
Q 014583 148 ALCGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS----DASA--LNTTA-TKVEGGWILEGQKRWIGNSTFADVLVI 217 (422)
Q Consensus 148 ~~~g~~--~qk~~~l~~~~~g~~~~~~a~tE~~~-Gs----~~~~--~~t~a-~~~~~~~~LnG~K~~is~a~~ad~~~v 217 (422)
..++++ +--.+|+..+.+.++..+.++|.|.. -| ...+ +.+.+ ++++|||+|||.|.|+|++ .||+++|
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V 197 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI 197 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence 444544 44588999999999999999999863 12 1112 22344 4578999999999999996 9999999
Q ss_pred EEEecCC----CC--eEEEEEeCCCCCeeeecccCccccccc-----------cceeEEEceeecCCCCC--CCCC---C
Q 014583 218 FARNTTT----NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGV---N 275 (422)
Q Consensus 218 ~a~~~~~----~~--~~~flV~~~~~Gv~~~~~~~~~Gl~~~-----------~~~~l~f~~v~Vp~~~~--l~~~---~ 275 (422)
++++... ++ ..+|+||.++||+++.....++|.++. ..+.|.||||+||++++ +|.. +
T Consensus 198 ~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~ 277 (477)
T TIGR02309 198 FPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCN 277 (477)
T ss_pred eccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHH
Confidence 9997532 23 688999999999999998899999876 67999999999999999 6663 1
Q ss_pred -CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014583 276 -SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (422)
Q Consensus 276 -~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~ 354 (422)
+|... ..++..+++++|.+.++++.++.|++. .+||.++.++|.||++|++|.+.+++++++++.++...+.+
T Consensus 278 ~~f~~~-----~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~ 351 (477)
T TIGR02309 278 NAYAAT-----GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKEN 351 (477)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 22221 234677999999999999999999999 99999999999999999999999999999999999988774
Q ss_pred C-----CChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccC
Q 014583 355 A-----MTPGHASLGKSWITARARETVALGRELLGGNGILS 390 (422)
Q Consensus 355 ~-----~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~ 390 (422)
. +....++++|.++++...++. .|+|++||.|++.
T Consensus 352 ~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 352 AYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 3 356778999999999999995 9999999999975
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.87 E-value=1.7e-21 Score=167.12 Aligned_cols=147 Identities=22% Similarity=0.302 Sum_probs=141.2
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014583 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (422)
Q Consensus 275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~ 354 (422)
+|+......+..+|+.+++.++|.++.+++.+.+|+++|++||+++.++|.++++|+++.++++++++++++++...+.+
T Consensus 2 ~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~ 81 (150)
T PF00441_consen 2 QGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAG 81 (150)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhccccccccccccc
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHhhc
Q 014583 355 AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL 421 (422)
Q Consensus 355 ~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~~l 421 (422)
.....+++++|+++++.+.++++.|++++|+.||..++++++++||++...+++|+++++...+.+-
T Consensus 82 ~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~ 148 (150)
T PF00441_consen 82 QNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARR 148 (150)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHH
T ss_pred cccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999999999999999888763
No 45
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.77 E-value=1.7e-18 Score=141.13 Aligned_cols=112 Identities=45% Similarity=0.544 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCchhhH
Q 014583 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCST 134 (422)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s~~~ 134 (422)
|++++++++++++|+++++.|...++|+++.+|.+.|+++++.|++++.+ +++||.|.++.+.+.+.+++++.|.++++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~ 80 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence 57899999999999999999999999888899999999999999999987 99999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCc
Q 014583 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (422)
Q Consensus 135 ~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~ 167 (422)
.+++|.++++..|..+|+++||++|||++.+|+
T Consensus 81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 999998888889999999999999999999986
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.64 E-value=2e-15 Score=126.93 Aligned_cols=122 Identities=24% Similarity=0.223 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--cCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCC-Ch---
Q 014583 289 VMVAWQPIGISMGVYDMCHRYLKERKQ--FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE----KGAM-TP--- 358 (422)
Q Consensus 289 ~~~aa~~~G~a~~al~~a~~y~~~R~~--fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d----~~~~-~~--- 358 (422)
+.+++.++|+++++++.++++++.|.. .+.++.+.|.+|.+|+++.+++++++..++.+++.++ .+.. ..
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 468999999999999999999999988 6789999999999999999999999999999999855 3333 22
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHH
Q 014583 359 GHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVC 410 (422)
Q Consensus 359 ~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~ 410 (422)
....+.|.++.+.+.++++.+++.+||.++...+|++|+|||+++.+.|...
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 2356789999999999999999999999999999999999999999988653
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.64 E-value=4.3e-16 Score=107.66 Aligned_cols=52 Identities=44% Similarity=0.742 Sum_probs=47.4
Q ss_pred EEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCcccEEEEEEEec
Q 014583 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (422)
Q Consensus 171 ~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~ad~~~v~a~~~ 222 (422)
|||+|||++|+|+..++|+|++++++|+|||+|+||++++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999984
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.53 E-value=2.3e-12 Score=129.23 Aligned_cols=233 Identities=10% Similarity=0.030 Sum_probs=149.5
Q ss_pred HHHHhhhhhhhcCcceeEEeecCCCC-CC----CcCCCeeEEE-EECCEEEEEeEeeecCCCCcccEEEE-EEEe---cC
Q 014583 154 EQKQKYLPSLAQLNTIACWALTEPAY-GS----DASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT 223 (422)
Q Consensus 154 ~qk~~~l~~~~~g~~~~~~a~tE~~~-Gs----~~~~~~t~a~-~~~~~~~LnG~K~~is~a~~ad~~~v-~a~~---~~ 223 (422)
+--.+|+..+.+.++..+.++|.|.. -| ....+-...+ ++++|.+|+|.|...|+++.+|.++| .... .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 44578999999999999999999863 12 1112333444 46789999999999999999999998 4443 12
Q ss_pred CCCe-EEEEEeCCCCCeeeecccCcc-c-------cc-------cccceeEEEceeecCCCCCCCCCCCHHHHHHHh-HH
Q 014583 224 TNQI-NGYLVKKDAPGLTVTKIENKI-G-------LR-------IVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVL-AV 286 (422)
Q Consensus 224 ~~~~-~~flV~~~~~Gv~~~~~~~~~-G-------l~-------~~~~~~l~f~~v~Vp~~~~l~~~~~~~~~~~~l-~~ 286 (422)
+.+. ..|.||.++|||++......- + .. +-.-+-+.||||+||+|+++--.+-- ....+. ..
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e-~~~~~~~~~ 294 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFE-RCRTWAQYG 294 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHH-HHHhHHHhh
Confidence 3444 469999999999987543211 0 00 11236789999999999999443211 111000 00
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCChhh
Q 014583 287 -SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-----AMTPGH 360 (422)
Q Consensus 287 -~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~-----~~~~~~ 360 (422)
.....+.+.. +++......+--+..+..--..+.++|+||.+|++|.+..+.++++...+....... .+....
T Consensus 295 ~~~~~~~~q~~-~r~~~k~dfl~G~a~~~ae~~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P~~~~ 373 (519)
T TIGR02310 295 GFARLFPMQAC-TRLAVKLDFITGLLHKALQCTGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLPSAQA 373 (519)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeeCHHH
Confidence 0011111111 122222222222222222222456899999999999999999999887776544332 134456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCccc
Q 014583 361 ASLGKSWITARARETVALGRELLGGNGI 388 (422)
Q Consensus 361 ~~~~K~~~~~~~~~v~~~~~~~~Gg~g~ 388 (422)
...+|.+.++...++...+.+++||.=.
T Consensus 374 ~~a~r~~~~~~y~r~~eil~~~~agGli 401 (519)
T TIGR02310 374 LQTYRVMAPMAYHTIKKIIEQTVTSGLI 401 (519)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHccCCee
Confidence 6889999999999999999877765433
No 49
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.51 E-value=2.6e-12 Score=124.49 Aligned_cols=236 Identities=16% Similarity=0.204 Sum_probs=161.9
Q ss_pred cCCH--HHHHhhhhhhhcCcceeEEeecCCCCC-C----CcC--CCeeEEEE-ECCEEEEEeEeeecCCCCcccEEEEE-
Q 014583 150 CGSE--EQKQKYLPSLAQLNTIACWALTEPAYG-S----DAS--ALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIF- 218 (422)
Q Consensus 150 ~g~~--~qk~~~l~~~~~g~~~~~~a~tE~~~G-s----~~~--~~~t~a~~-~~~~~~LnG~K~~is~a~~ad~~~v~- 218 (422)
+|++ +.-.+|+..+.+.++..+-|+|.|..- | ... .+-.+.+. .+||.++.|.|..+|+++.+|.++|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 5555 445789999999999999999998631 1 122 23444544 67999999999999999999999998
Q ss_pred EEe--cCCCC-eEEEEEeCCCCCeeeecccC---cccccccc------------ceeEEEceeecCCCCCCCCCCCHH--
Q 014583 219 ARN--TTTNQ-INGYLVKKDAPGLTVTKIEN---KIGLRIVQ------------NGDILLKKVFVPDEDRLPGVNSFQ-- 278 (422)
Q Consensus 219 a~~--~~~~~-~~~flV~~~~~Gv~~~~~~~---~~Gl~~~~------------~~~l~f~~v~Vp~~~~l~~~~~~~-- 278 (422)
.+. +++.+ ...|.+|.++|||++..... .-|+.+.+ .+-|.||||+||+|+++--. +++
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~-d~~~~ 283 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYR-DLERA 283 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeec-cHHHH
Confidence 332 22233 45699999999999864331 22222222 24599999999999998442 222
Q ss_pred ----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014583 279 ----DTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (422)
Q Consensus 279 ----~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~ 354 (422)
....+....|...+.+..+-....+-.+..-++. ..+.++++||.+|++|.+-.+.++++...++......
T Consensus 284 ~~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~ 358 (493)
T COG2368 284 YAWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKN 358 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 1112223344444444433333333322222222 2357899999999999999999999998887765543
Q ss_pred C-----CChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCc
Q 014583 355 A-----MTPGHASLGKSWITARARETVALGRELLGGNGILSD 391 (422)
Q Consensus 355 ~-----~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~ 391 (422)
. +.+..+...|.+++..-.++...+.++.||.-....
T Consensus 359 ~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lP 400 (493)
T COG2368 359 PNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIITLP 400 (493)
T ss_pred CCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceeecC
Confidence 2 456678889999999999999999998877665543
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.80 E-value=2.6e-08 Score=91.89 Aligned_cols=118 Identities=19% Similarity=0.331 Sum_probs=78.2
Q ss_pred HHHHhhhhhhhcCcceeEEeecCCCC--CCCc----CCCeeEEEE-ECCEEEEEeEeeecCCCCcccEEEEEEEec---C
Q 014583 154 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFARNT---T 223 (422)
Q Consensus 154 ~qk~~~l~~~~~g~~~~~~a~tE~~~--Gs~~----~~~~t~a~~-~~~~~~LnG~K~~is~a~~ad~~~v~a~~~---~ 223 (422)
+--.+|+..+.++++..+.+++.|.. +..+ ..+-.+.++ ++||.+|+|.|...|+++.+|.++|+-... +
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 34478999999999999999999963 2222 124455554 679999999999999999999999986542 2
Q ss_pred C-CCeEEEEEeCCCCCeeeecccCccccc--cc----------cceeEEEceeecCCCCCC
Q 014583 224 T-NQINGYLVKKDAPGLTVTKIENKIGLR--IV----------QNGDILLKKVFVPDEDRL 271 (422)
Q Consensus 224 ~-~~~~~flV~~~~~Gv~~~~~~~~~Gl~--~~----------~~~~l~f~~v~Vp~~~~l 271 (422)
+ +-...|.||.++||+++.........+ .. .-+-|.||||+||+|+++
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 2 234679999999999987554332222 11 137789999999999875
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=96.08 E-value=0.11 Score=46.77 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccC
Q 014583 319 PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-----AMTPGHASLGKSWITARARETVALGRELLGGNGILS 390 (422)
Q Consensus 319 ~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~-----~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~ 390 (422)
.+.++|+||++|++|...++.+++++..+....... .+.......+|.+.++...+++..+.+++||.=.+.
T Consensus 43 G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~ 119 (205)
T PF03241_consen 43 GIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITL 119 (205)
T ss_dssp TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC-
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 357899999999999999999999988776644332 244556789999999999999999999888876654
No 52
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=96.04 E-value=0.014 Score=47.96 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=30.0
Q ss_pred HHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcce
Q 014583 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169 (422)
Q Consensus 134 ~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~ 169 (422)
..+++|+++...+|...||+||+++|||...+.+++
T Consensus 90 ~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 90 LPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp -THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred chhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 445699999999999999999999999999888754
No 53
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=95.09 E-value=0.34 Score=49.81 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=65.2
Q ss_pred cCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchH
Q 014583 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTP-GHASLGKSWITARARETVALGRELLGGNGILSDFLV 394 (422)
Q Consensus 316 fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~-~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~ 394 (422)
+|+.|.+.|.+..||+++.+.+|+|.+.+-++...+..+.+.. .+..+++.||.+...++-..+-+++.. ++..+..+
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~ 507 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSY 507 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHH
Confidence 5888999999999999999999999999999988887765443 346799999999999999999899987 65553333
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.44 E-value=1.4 Score=44.94 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=62.3
Q ss_pred cCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CChhhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 014583 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA-MTPGHASLGKSWITARARETVALGRELLGG 385 (422)
Q Consensus 316 fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~-~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg 385 (422)
+|+.|.+.|.+-+|||+..+.+|+|.+.+.++.+.+..+- ....+...++++|++...++...+-++-++
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6889999999999999999999999999999999888764 445578899999999999999988887777
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=42.90 E-value=2.5e+02 Score=30.76 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=44.5
Q ss_pred cCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHHHHHh
Q 014583 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELL 383 (422)
Q Consensus 316 fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~~~~~~~~v~~~~~~~~ 383 (422)
.|..|...|.+..||+++++.+|++.+.+.+.- +++.+.. ...+++.+|.+...++-..+-++.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 622 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPEA-DLPLVHWAVQDALYQAEQALDGLL 622 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999998776664 3333322 256666666666555544444443
No 56
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=42.70 E-value=81 Score=22.45 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHhh-ccccHHHHHHhCCCC-----HHHHHHHHhcccccc
Q 014583 54 LLTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFP-----FHVIPKLGALRVAGG 103 (422)
Q Consensus 54 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~Gl~~~ 103 (422)
.|++.|.++.+.+.+|..++ ..|...|+-+.-.+. ...+++|.+.|++.-
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccC
Confidence 47899999999999998875 456667765543443 356778888888764
No 57
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=28.35 E-value=89 Score=26.22 Aligned_cols=61 Identities=11% Similarity=0.230 Sum_probs=32.1
Q ss_pred EECCEEEEEeEeeecCCCCcccEEEEEEEecCCCCeEEEEEeCC-----CCCeeeecccCc--------cccccccceeE
Q 014583 192 KVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKD-----APGLTVTKIENK--------IGLRIVQNGDI 258 (422)
Q Consensus 192 ~~~~~~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~~~-----~~Gv~~~~~~~~--------~Gl~~~~~~~l 258 (422)
.+.+.|.|+|+|+..--. ..+....+.+-++|.. .|.|++...... .+.....++++
T Consensus 66 a~~~~WlV~Grrrg~f~~----------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~~~~~~~~~~~~~~~~~~~~ev 135 (147)
T PF12584_consen 66 ADSDNWLVSGRRRGVFSL----------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYDPSNISKGDSMPRLEPFPPCEV 135 (147)
T ss_pred cCCCcEEEeccCcceEEe----------cCCCeEEEEEEEEecccceecCCEEEEEeccCCCcccccccccccCCCceeE
Confidence 356779999998743211 1111123445566653 566777665421 22333456666
Q ss_pred EEce
Q 014583 259 LLKK 262 (422)
Q Consensus 259 ~f~~ 262 (422)
.+.|
T Consensus 136 ~~~n 139 (147)
T PF12584_consen 136 DYRN 139 (147)
T ss_pred EEcC
Confidence 6655
No 58
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=22.27 E-value=1.3e+02 Score=20.64 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=24.8
Q ss_pred EEEEeEeeecCCCCcccEEEEEEEecCCCCeEEEEE
Q 014583 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLV 232 (422)
Q Consensus 197 ~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV 232 (422)
|-|.|+|.++-.+++-+-+-+.-+.+..-+.++++|
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e~q~~~~f~iv 37 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNEKQLESHFAIV 37 (68)
T ss_pred ccccccEeeeccCCccceeEEEecchhhcCCcEEEE
Confidence 447899999999998887776655543334445554
Done!