Citrus Sinensis ID: 014584

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--

MQLKPLNTYTTTIMLFITFIILFFTGFLEFPSISSSIIPQQQQRQQQQQQQSINPSSKLPIITESKPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNGSGSLQEFSGDCGELKMEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLFESSTPPLQRRNGDPLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLVYWSSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVSRKGGRNAKAR

ccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEccccccccccEEEEEccccccccccccccEEEEcccccccccccccEEEEEccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccccccccHHHHHHHccccEEEEEcccccccccHHHHHHHHHcccEEEEEcccccccccccccEEEccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccc

cccccHHHHHHHHHHHHHHHHHHHHcccEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccEcccccEEEEcHHHHcccccccccccccccccEEEEEccccccccccEEEEEEEcccccccEccccEEcccccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccEEEEcccccccccccHcHHccccccccccccccccHHHHHHHHHcEEEEEEEcccccHHHHHHHHHHHHccccEEEEccccHHHHcccccEEEEcccccHHHHHHHHHHHHccHHHHHHHHHHHHccccccccEcccccccHHHHHHHHHHHHccccccccc

mqlkplntyTTTIMLFITFIILFFTgflefpsisssiipQQQQRQQQQQqqsinpssklpiiteskpepFTNLLAAFKRwdsevgcaqfrdkhkglinngvktngsgslqefsgdcgelkMEHVSVLVKgwtwipdnldnlyscrcgisclwtkssvladhpdallfesstpplqrrngdplRVYMELEagrkrsgceDIFISyhaeddvqstyagalfhngrnyhvssyknndtlvywsssrclprrNQLAKSLLnllpyhsfgkclnnvgglDMALAfypecandpsvtpkwwdHLHCAMSHYKFVLAIENTMTESYVTEKLFYsldsgavpiyfgapnvwdfvpphsiidgtkfgsMEELASFVKAladdpvayaEYHAWRRCgvlgnygktrsvsldtlpcrlceavsrkggrnakar

mqlkplntYTTTIMLFITFIILFFTGFLEFPSISSSIIPQQQQRQQQQQQQSINPSSKLPIITESKPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNGSGSLQEFSGDCGELKMEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLfesstpplqrrngdPLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLVYWSSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTrsvsldtlpcrlceavsrkggrnakar

MQLKPLNtytttimlfitfiilfftgflefpsisssiipqqqqrqqqqqqqsinpssKLPIITESKPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNGSGSLQEFSGDCGELKMEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLFESSTPPLQRRNGDPLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLVYWSSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVSRKGGRNAKAR

*********************************************************************FTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNG**SLQEFSGDCGELKMEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLF***************RVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLVYWSSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAV***********

******N*YTTTIMLFITFIILFFTGFLEFPSISSS***********************************NLLAAFKRWDSEVGCAQFRDKHKG******************************VLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLFESSTPPLQRRNGDPLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYH***YKNNDTLVYWSSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCE*************

MQLKPLNTYTTTIMLFITFIILFFTGFLEFPSISSS*******************SSKLPIITESKPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNGSGSLQEFSGDCGELKMEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLFESSTPPLQRRNGDPLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLVYWSSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVS**********

**LKPLNTYTTTIMLFITFIILFFTGFLEFPSISSSIIPQQ************************KPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNGSGSLQEFSGDCGELKMEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLFESSTPPLQRRNGDPLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLVYWSSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVSRK********

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		422	2.2.26 [Sep-21-2011]
Q9C8W3		401	Alpha-(1,4)-fucosyltransf	yes	no	0.945	0.995	0.704	1e-179
Q6NTZ6		469	Alpha-(1,3)-fucosyltransf	N/A	no	0.364	0.328	0.301	2e-18
Q6A1G3		471	Alpha-(1,3)-fucosyltransf	yes	no	0.362	0.324	0.305	5e-18
Q6A198		478	Alpha-(1,3)-fucosyltransf	yes	no	0.343	0.303	0.333	2e-15
Q9LJK1		501	Glycoprotein 3-alpha-L-fu	no	no	0.270	0.227	0.391	2e-15
Q8AWB5		475	Alpha-(1,3)-fucosyltransf	yes	no	0.417	0.370	0.292	5e-15
Q495W5		492	Alpha-(1,3)-fucosyltransf	yes	no	0.348	0.298	0.343	8e-15
Q5F2L1		483	Alpha-(1,3)-fucosyltransf	yes	no	0.390	0.341	0.290	1e-14
Q6P4F1		479	Alpha-(1,3)-fucosyltransf	no	no	0.343	0.302	0.314	1e-14
Q5F2L2		481	Alpha-(1,3)-fucosyltransf	yes	no	0.343	0.301	0.320	2e-14

>sp\|Q9C8W3\|FUT13_ARATH Alpha-(1,4)-fucosyltransferase OS=Arabidopsis thaliana GN=FUT13 PE=2 SV=2	Back alignment and function desciption

 Score =  626 bits (1615), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 295/419 (70%), Positives = 349/419 (83%), Gaps = 20/419 (4%)

Query: 1   MQLKPLNTYTTTIMLFITFIILFFTGFLEFPSISSSIIPQQQQRQQQQQQQSINPSSKLP 60
           M ++ LN     +M+F T +IL FTG LEFPS S+S+            + SI+P  KL 
Sbjct: 1   MPMRYLNAMAALLMMFFTLLILSFTGILEFPSASTSM------------EHSIDPEPKL- 47

Query: 61  IITESKPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNGSGSLQEFSGDCGELK 120
             ++S  +PF+++L A+K+WD EVGCA+FR+ HK  I   V    SGSLQEF   CG+LK
Sbjct: 48  --SDSTSDPFSDVLVAYKKWDFEVGCARFRENHKDAILGNVS---SGSLQEFG--CGKLK 100

Query: 121 MEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLFESSTPPLQRRNGD 180
           M+HV VLVKGWTWIPDNL+NLYSCRCG++CLWTKSSVLAD PDALLFE++TPPLQRR GD
Sbjct: 101 MKHVKVLVKGWTWIPDNLENLYSCRCGMTCLWTKSSVLADSPDALLFETTTPPLQRRVGD 160

Query: 181 PLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLVYWS 240
           PLRVYMELEAGRKRSG EDIFISYHA+DDVQ+TYAG+LFHN RNYH+S +KNND LVYWS
Sbjct: 161 PLRVYMELEAGRKRSGREDIFISYHAKDDVQTTYAGSLFHNNRNYHISPHKNNDVLVYWS 220

Query: 241 SSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHC 300
           SSRCLP R++LAKSLL+L+P+HSFGKCLNNVGGLD AL+ YPEC  + +   KW+DHLHC
Sbjct: 221 SSRCLPHRDRLAKSLLDLIPHHSFGKCLNNVGGLDSALSMYPECVAEHNAEAKWYDHLHC 280

Query: 301 AMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSM 360
           AMSHYKFVLAIENT  ESYVTEKLFY+LDSG+VPIYFGA NV DFVPPHS+IDG+KFGSM
Sbjct: 281 AMSHYKFVLAIENTAVESYVTEKLFYALDSGSVPIYFGASNVQDFVPPHSVIDGSKFGSM 340

Query: 361 EELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVSRKGGRNA 419
           +ELA++VK L DDPVAY+EYHAWRRCG++GNYGKTR+VSLDTLPCRLCE +SR+GG+NA
Sbjct: 341 QELAAYVKRLGDDPVAYSEYHAWRRCGLMGNYGKTRAVSLDTLPCRLCEEISRRGGKNA 399

May be involved in cell wall synthesis. Catalyzes alpha-1,4 glycosidic linkages and generates Lewis-a epitopes.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q6NTZ6\|FUT10_XENLA Alpha-(1,3)-fucosyltransferase 10 OS=Xenopus laevis GN=fut10 PE=2 SV=2	Back alignment and function description

>sp\|Q6A1G3\|FUT10_XENTR Alpha-(1,3)-fucosyltransferase 10 OS=Xenopus tropicalis GN=fut10 PE=2 SV=1	Back alignment and function description

>sp\|Q6A198\|FUT10_BOVIN Alpha-(1,3)-fucosyltransferase 10 OS=Bos taurus GN=FUT10 PE=2 SV=1	Back alignment and function description

>sp\|Q9LJK1\|FUT11_ARATH Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1	Back alignment and function description

>sp\|Q8AWB5\|FUT10_CHICK Alpha-(1,3)-fucosyltransferase 10 OS=Gallus gallus GN=FUT10 PE=2 SV=2	Back alignment and function description

>sp\|Q495W5\|FUT11_HUMAN Alpha-(1,3)-fucosyltransferase 11 OS=Homo sapiens GN=FUT11 PE=1 SV=1	Back alignment and function description

>sp\|Q5F2L1\|FUT10_RAT Alpha-(1,3)-fucosyltransferase 10 OS=Rattus norvegicus GN=Fut10 PE=2 SV=1	Back alignment and function description

>sp\|Q6P4F1\|FUT10_HUMAN Alpha-(1,3)-fucosyltransferase 10 OS=Homo sapiens GN=FUT10 PE=2 SV=2	Back alignment and function description

>sp\|Q5F2L2\|FUT10_MOUSE Alpha-(1,3)-fucosyltransferase 10 OS=Mus musculus GN=Fut10 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		422
224145164		409	predicted protein [Populus trichocarpa]	0.962	0.992	0.787	0.0
224135943		409	predicted protein [Populus trichocarpa]	0.962	0.992	0.780	0.0
255571714		420	alpha-(1,4)-fucosyltransferase, putative	0.969	0.973	0.748	0.0
61845105		430	alpha 1,4 fucosyltransferase [Populus tr	0.947	0.930	0.779	0.0
225470784		403	PREDICTED: alpha-(1,4)-fucosyltransferas	0.947	0.992	0.747	0.0
350535587		413	alpha-1,4-fucosyltransferase [Solanum ly	0.966	0.987	0.738	0.0
30698834		401	alpha-(1,4)-fucosyltransferase [Arabidop	0.945	0.995	0.704	1e-177
449446351		465	PREDICTED: alpha-(1,4)-fucosyltransferas	0.952	0.864	0.728	1e-177
356535719		401	PREDICTED: alpha-(1,4)-fucosyltransferas	0.938	0.987	0.751	1e-177
297839047		401	hypothetical protein ARALYDRAFT_895045 [	0.945	0.995	0.704	1e-176

>gi\|224145164\|ref\|XP_002325549.1\| predicted protein [Populus trichocarpa] gi\|222862424\|gb\|EEE99930.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/424 (78%), Positives = 365/424 (86%), Gaps = 18/424 (4%)

Query: 1   MQLKPLNTYTTTIMLFITFIILFFTGFLEFPSISSSIIPQQQQRQQQQQQQSINPSSKLP 60
           MQLKPLNTYT T+MLF T IILFF+GFLEFPSI++SI                +P     
Sbjct: 1   MQLKPLNTYTITLMLFFTIIILFFSGFLEFPSIATSIT---------------SPIKDPN 45

Query: 61  IITESKPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVK-TNGSGSLQEFSGD--CG 117
              ++ P+PFT+L  AFK+WDS+VGC QFR+KHK L + G K TNGS SLQ   GD  C 
Sbjct: 46  FPVKTTPDPFTDLFVAFKKWDSQVGCVQFREKHKNLGSFGSKGTNGSASLQVVDGDVGCS 105

Query: 118 ELKMEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLFESSTPPLQRR 177
           ELKMEHV+VLVKGWTWIP NLDNLYSC CG+SCLWTKSSVLAD PDALLFE++TPPLQRR
Sbjct: 106 ELKMEHVNVLVKGWTWIPGNLDNLYSCHCGLSCLWTKSSVLADKPDALLFETTTPPLQRR 165

Query: 178 NGDPLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLV 237
           NGDPLRVYM+LEAGRKRSG ED+FISYHAEDDVQSTYAGALFHNGRNYHVS  K+NDTLV
Sbjct: 166 NGDPLRVYMDLEAGRKRSGREDLFISYHAEDDVQSTYAGALFHNGRNYHVSRRKDNDTLV 225

Query: 238 YWSSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDH 297
           YWSSSRCL  RN+LAKSLL+LLP+HSFGKCLNNVGGLDMAL+FYPECAND S+ PKWWDH
Sbjct: 226 YWSSSRCLADRNRLAKSLLSLLPHHSFGKCLNNVGGLDMALSFYPECANDASLKPKWWDH 285

Query: 298 LHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKF 357
           LHCAMSHYKFVLAIENT TESYVTEKLFY+LDSG+VPIYFGAPNV DFVPPHSIIDG KF
Sbjct: 286 LHCAMSHYKFVLAIENTWTESYVTEKLFYALDSGSVPIYFGAPNVLDFVPPHSIIDGNKF 345

Query: 358 GSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVSRKGGR 417
            SMEELAS+VK LA+DPVAYAEYHAWRRCGVLGNYGKTR+ SLDTLPCRLCEAVSRKGGR
Sbjct: 346 NSMEELASYVKDLANDPVAYAEYHAWRRCGVLGNYGKTRAASLDTLPCRLCEAVSRKGGR 405

Query: 418 NAKA 421
           NA+A
Sbjct: 406 NARA 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224135943\|ref\|XP_002327342.1\| predicted protein [Populus trichocarpa] gi\|222835712\|gb\|EEE74147.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255571714\|ref\|XP_002526800.1\| alpha-(1,4)-fucosyltransferase, putative [Ricinus communis] gi\|223533804\|gb\|EEF35535.1\| alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|61845105\|emb\|CAI70374.1\| alpha 1,4 fucosyltransferase [Populus tremula x Populus alba]	Back alignment and taxonomy information

>gi\|225470784\|ref\|XP_002269211.1\| PREDICTED: alpha-(1,4)-fucosyltransferase [Vitis vinifera] gi\|147812436\|emb\|CAN67769.1\| hypothetical protein VITISV_039237 [Vitis vinifera] gi\|296081071\|emb\|CBI18265.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|350535587\|ref\|NP_001233946.1\| alpha-1,4-fucosyltransferase [Solanum lycopersicum] gi\|18477220\|emb\|CAC85740.1\| alpha-1,4-fucosyltransferase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi|30698834|ref|NP_177344.2| alpha-(1,4)-fucosyltransferase [Arabidopsis thaliana] gi|17376367|sp|Q9C8W3.2|FUT13_ARATH RecName: Full=Alpha-(1,4)-fucosyltransferase; AltName: Full=FT4-M; AltName: Full=FucTC; AltName: Full=Fucosyltransferase 13; Short=AtFUT13; AltName: Full=Galactoside 3(4)-L-fucosyltransferase gi|13992486|emb|CAC38049.1| alpha1,3-fucosyltransferase homologue [Arabidopsis thaliana] gi|111074330|gb|ABH04538.1| At1g71990 [Arabidopsis thaliana] gi|332197140|gb|AEE35261.1| alpha-(1,4)-fucosyltransferase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449446351\|ref\|XP_004140935.1\| PREDICTED: alpha-(1,4)-fucosyltransferase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356535719\|ref\|XP_003536391.1\| PREDICTED: alpha-(1,4)-fucosyltransferase-like [Glycine max]	Back alignment and taxonomy information

>gi\|297839047\|ref\|XP_002887405.1\| hypothetical protein ARALYDRAFT_895045 [Arabidopsis lyrata subsp. lyrata] gi\|297333246\|gb\|EFH63664.1\| hypothetical protein ARALYDRAFT_895045 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		422
TAIR\|locus:2016054		401	FUT13 "fucosyltransferase 13"	0.841	0.885	0.758	8.9e-157
DICTYBASE\|DDB_G0284467		389	fut1 "alpha-3/4-fucosyltransfe	0.471	0.511	0.306	1e-17
UNIPROTKB\|F1SU51		493	FUT11 "Uncharacterized protein	0.376	0.322	0.341	1e-14
UNIPROTKB\|F1N557		477	FUT10 "Alpha-(1,3)-fucosyltran	0.341	0.301	0.333	1.2e-14
UNIPROTKB\|Q6A198		478	FUT10 "Alpha-(1,3)-fucosyltran	0.343	0.303	0.333	1.2e-14
UNIPROTKB\|E2RE70		493	FUT11 "Uncharacterized protein	0.376	0.322	0.341	2.8e-14
UNIPROTKB\|Q495W5		492	FUT11 "Alpha-(1,3)-fucosyltran	0.376	0.323	0.341	2.9e-14
UNIPROTKB\|E1BIT9		493	FUT11 "Uncharacterized protein	0.376	0.322	0.341	3.8e-14
UNIPROTKB\|Q6P4F1		479	FUT10 "Alpha-(1,3)-fucosyltran	0.343	0.302	0.320	6e-14
DICTYBASE\|DDB_G0274297		501	fut3 "alpha-3/4-fucosyltransfe	0.518	0.437	0.278	6.7e-14

TAIR\|locus:2016054 FUT13 "fucosyltransferase 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
 Identities = 273/360 (75%), Positives = 319/360 (88%)

Query:    60 PIITESKPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNGSGSLQEFSGDCGEL 119
             P +++S  +PF+++L A+K+WD EVGCA+FR+ HK  I   V    SGSLQEF   CG+L
Sbjct:    45 PKLSDSTSDPFSDVLVAYKKWDFEVGCARFRENHKDAILGNVS---SGSLQEFG--CGKL 99

Query:   120 KMEHVSVLVKGWTWIPDNLDNLYSCRCGISCLWTKSSVLADHPDALLFESSTPPLQRRNG 179
             KM+HV VLVKGWTWIPDNL+NLYSCRCG++CLWTKSSVLAD PDALLFE++TPPLQRR G
Sbjct:   100 KMKHVKVLVKGWTWIPDNLENLYSCRCGMTCLWTKSSVLADSPDALLFETTTPPLQRRVG 159

Query:   180 DPLRVYMELEAGRKRSGCEDIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDTLVYW 239
             DPLRVYMELEAGRKRSG EDIFISYHA+DDVQ+TYAG+LFHN RNYH+S +KNND LVYW
Sbjct:   160 DPLRVYMELEAGRKRSGREDIFISYHAKDDVQTTYAGSLFHNNRNYHISPHKNNDVLVYW 219

Query:   240 SSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLH 299
             SSSRCLP R++LAKSLL+L+P+HSFGKCLNNVGGLD AL+ YPEC  + +   KW+DHLH
Sbjct:   220 SSSRCLPHRDRLAKSLLDLIPHHSFGKCLNNVGGLDSALSMYPECVAEHNAEAKWYDHLH 279

Query:   300 CAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGS 359
             CAMSHYKFVLAIENT  ESYVTEKLFY+LDSG+VPIYFGA NV DFVPPHS+IDG+KFGS
Sbjct:   280 CAMSHYKFVLAIENTAVESYVTEKLFYALDSGSVPIYFGASNVQDFVPPHSVIDGSKFGS 339

Query:   360 MEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVSRKGGRNA 419
             M+ELA++VK L DDPVAY+EYHAWRRCG++GNYGKTR+VSLDTLPCRLCE +SR+GG+NA
Sbjct:   340 MQELAAYVKRLGDDPVAYSEYHAWRRCGLMGNYGKTRAVSLDTLPCRLCEEISRRGGKNA 399

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008417 "fucosyltransferase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0010493 "Lewis a epitope biosynthetic process" evidence=IDA

DICTYBASE\|DDB_G0284467 fut1 "alpha-3/4-fucosyltransferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SU51 FUT11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N557 FUT10 "Alpha-(1,3)-fucosyltransferase 10" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6A198 FUT10 "Alpha-(1,3)-fucosyltransferase 10" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RE70 FUT11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q495W5 FUT11 "Alpha-(1,3)-fucosyltransferase 11" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BIT9 FUT11 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6P4F1 FUT10 "Alpha-(1,3)-fucosyltransferase 10" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0274297 fut3 "alpha-3/4-fucosyltransferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8W3	FUT13_ARATH	2, ., 4, ., 1, ., -	0.7040	0.9454	0.9950	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		422
pfam00852		353	pfam00852, Glyco_transf_10, Glycosyltransferase fa	1e-28
pfam02699		83	pfam02699, YajC, Preprotein translocase subunit	0.004

>gnl\|CDD\|216152 pfam00852, Glyco_transf_10, Glycosyltransferase family 10 (fucosyltransferase)	Back alignment and domain information

 Score =  114 bits (288), Expect = 1e-28
 Identities = 83/312 (26%), Positives = 125/312 (40%), Gaps = 50/312 (16%)

Query: 131 WTWIPDNLDNLYSC---RCGISCLWTKSSVLADHPDALLF-------ESSTPPLQRRNGD 180
           WTW      +L  C        C  T +  L D  DA++F       + S  P   R   
Sbjct: 55  WTWPFGVPFDLNDCPELFNIDGCFLTTNRSLYDEADAVVFHHRDISSDLSNLPKSPRPPG 114

Query: 181 PLRVYMELEA---GRKRSGCEDIF---ISYHAEDDVQSTYAGALFHN----GRNYHVSSY 230
              V+  +E+     +  G E +F   ++Y  + D+   Y G L                
Sbjct: 115 QKWVWFNMESPSNSPRLPGLEGLFNWTMTYRRDSDIFVPY-GYLVPLEGPEEVRVLPEIL 173

Query: 231 KNNDTLVYWSSSRCLP--RRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDP 288
           +    LV W  S C    +R +  + L   +    +GKC  +                D 
Sbjct: 174 EKKSKLVAWVVSNCNEPSKRVKYYRELSKHIEVDVYGKCFGD-------------PLPDG 220

Query: 289 SVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAP--NVWDFV 346
              P         +S YKF LA EN++ + Y+TEKL+ +L +GAVP+  G P  N  +FV
Sbjct: 221 CYLP--------TLSQYKFYLAFENSLCKDYITEKLWNALAAGAVPVVLGPPRANYENFV 272

Query: 347 PPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLP-C 405
           PP S I    F S +ELA ++K+L  +   Y  Y  WR+   + N    R +S    P C
Sbjct: 273 PPDSFIHVDDFASPKELAEYLKSLDKNDDEYRRYFEWRKKYRVAN---QRLLSFWREPYC 329

Query: 406 RLCEAVSRKGGR 417
           + C+ + R   R
Sbjct: 330 QACDRLQRAEPR 341

This family of Fucosyltransferases are the enzymes transferring fucose from GDP-Fucose to GlcNAc in an alpha1,3 linkage. This family is know as glycosyltransferase family 10. Length = 353

>gnl\|CDD\|217191 pfam02699, YajC, Preprotein translocase subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		422
KOG2619		372	consensus Fucosyltransferase [Carbohydrate transpo	100.0
PF00852		349	Glyco_transf_10: Glycosyltransferase family 10 (fu	100.0
PF03016		302	Exostosin: Exostosin family; InterPro: IPR004263 H	95.79
PF13524		92	Glyco_trans_1_2: Glycosyl transferases group 1	95.23
cd03801		374	GT1_YqgM_like This family is most closely related	83.51
KOG1021		464	consensus Acetylglucosaminyltransferase EXT1/exost	82.69
PF00534		172	Glycos_transf_1: Glycosyl transferases group 1; In	80.99
cd03794		394	GT1_wbuB_like This family is most closely related	80.16

>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=6.8e-72  Score=564.24  Aligned_cols=316  Identities=32%  Similarity=0.505  Sum_probs=252.1

Q ss_pred             CCCCCchhHHHHHHhhhhhhhchhHHHhhhcccccCCccCCCCCCccccccccCccccccceEEEEEeecCCCCCC---C
Q 014584           64 ESKPEPFTNLLAAFKRWDSEVGCAQFRDKHKGLINNGVKTNGSGSLQEFSGDCGELKMEHVSVLVKGWTWIPDNLD---N  140 (422)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~W~w~p~~l~---~  140 (422)
                      ..-..|++..+-|+.+|...|+|...++.+    .+++.  .....+.+  . .++.|+  .|++  |+|+.....   .
T Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~p--~-~~~~~~--~i~~--~~~~f~~~~~~~~   86 (372)
T KOG2619|consen   20 RLLDLPVAVCLLAYLRVSPEVLTNSPRETL----PFLNV--SPDTFNTP--T-GKLLMK--VILL--WTWPFGLIPELSL   86 (372)
T ss_pred             ccccchhhheeeeccccccccccccccccc----ccccc--ccccccCc--c-ccccce--EEEE--EecCCCCCCCccc
Confidence            456789999999999999999999999987    12222  33333444  1 445555  4555  888644222   2


Q ss_pred             CccCCCCC-CeEEeccCCCCCCCCEEEEeCCCCCC------CCCCCCcceEeeccCCCCCC------CC-CCCccccccc
Q 014584          141 LYSCRCGI-SCLWTKSSVLADHPDALLFESSTPPL------QRRNGDPLRVYMELEAGRKR------SG-CEDIFISYHA  206 (422)
Q Consensus       141 ~~~c~C~~-~C~~T~dr~~~~~aDAVVFh~~~Pp~------~R~~~qq~~Vf~s~Esp~~~------~~-~~n~~MTYR~  206 (422)
                      ...|.|+. .|++|.+|+.+++|||||||+.+.+.      .|+++|. ||||++|||.+.      .+ +||||||||+
T Consensus        87 ~~~~~~~~~~C~iT~~rs~~~~adAvlfh~~d~~~~~~~l~~R~p~q~-~i~~s~ESP~~~~~~~~~~~~~fN~T~Tyr~  165 (372)
T KOG2619|consen   87 DNQCPFGIDGCRITTNRSLFDSADAVLFHHRDIPKSPLPLPGRKPGQP-WIWMSMESPSNSPGLSLIDGRLFNWTMTYRR  165 (372)
T ss_pred             ccccccCcCceEEeCCccccCCCCEEEEeeccCCCCcccccCCCCCCc-eEEEeccCCCCCccccccccccccceEEEec
Confidence            23555654 99999999999999999999875322      2666664 999999999863      24 8999999999


Q ss_pred             cCCcccccccccccCCCcc--c-cccCCCCcceEEEEccCCcc--hHHHHHHHHHhcCCeeEeccCcCCCCCcccccccC
Q 014584          207 EDDVQSTYAGALFHNGRNY--H-VSSYKNNDTLVYWSSSRCLP--RRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFY  281 (422)
Q Consensus       207 DSDI~~pYg~~~~~~~~~~--~-~~~~k~K~klvaW~vSNC~~--~R~~~v~~L~k~i~VD~yGkC~~n~~~~~~~l~~~  281 (422)
                      |||+++|||..........  + .+....|++.++|++|||.+  .|.+++++|+++++||+||+|+.+..         
T Consensus       166 dSd~~~pygy~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~l~iD~YG~c~~~~~---------  236 (372)
T KOG2619|consen  166 DSDLFVPYGYLEKPEANPVLVPVNSILSAKTKLAAWLVSNCIPRSARLDYYKELMKHLEIDSYGECLRKNA---------  236 (372)
T ss_pred             cCCCCCccceEeecccCceecccccccccccceeeeeccccCcchHHHHHHHHHHhhCceeeccccccccc---------
Confidence            9999999997543221111  1 13457899999999999997  69999999999999999999997521         


Q ss_pred             CCCCCCCCCCCccchhhhhhcccceEEEEeecCCCCCCchHHHhhhhcCCeeEEEeCCCccccccCCCCcccCCCCCCHH
Q 014584          282 PECANDPSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSME  361 (422)
Q Consensus       282 p~C~~~~~~~~~~~d~~~~~l~~YKFyLAFENS~c~DYVTEKl~~AL~aGsVPIy~G~~n~~~~~Pp~SfI~v~DF~S~~  361 (422)
                       ++.        +.+++.+++++||||||||||+|+||||||||+||.+|+||||+|++||++++|++||||++||+||+
T Consensus       237 -~~~--------~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~fvP~~SfI~vdDF~s~~  307 (372)
T KOG2619|consen  237 -NRD--------PSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYENFVPPDSFIHVDDFQSPQ  307 (372)
T ss_pred             -cCC--------CCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCccccccCCCcceEehhhcCCHH
Confidence             111        11345678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCcCCCcccccccCCCChhhHHHHHHHhcCC
Q 014584          362 ELASFVKALADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVSRKGG  416 (422)
Q Consensus       362 eLA~yLk~Ld~n~~~Y~eYf~WR~~~~~~~y~~~~~~~~~~~~CrLC~~L~~~~~  416 (422)
                      |||+||++|++|+++|++||+||+.+.     ......+++++|+||++|++.++
T Consensus       308 ela~ylk~L~~n~~~Y~~Yf~WR~~~~-----~~~~~~~~~~~CrlC~~l~~~~r  357 (372)
T KOG2619|consen  308 ELAAYLKKLDKNPAAYLSYFEWRKDYK-----VRLTSAWDSGFCRLCEKLQREPR  357 (372)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHhhc-----ccccccccchhhHHHHHHHhccc
Confidence            999999999999999999999997653     22334478899999999998764

>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []	Back alignment and domain information

>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1	Back alignment and domain information

>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]	Back alignment and domain information

>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		422
2nzw_A		371	Crystal Structure Of Alpha1,3-Fucosyltransferase Le		9e-07

>pdb|2NZW|A Chain A, Crystal Structure Of Alpha1,3-Fucosyltransferase Length = 371

Back alignment and structure

Iteration: 1

Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 302 MSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSME 361 +S YKF L ENT YVTEK+ + S +PIY+G+P+V P S ++ F + + Sbjct: 229 LSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFD 288 Query: 362 ELASFVKALADDPVAYAE 379 E ++K L AY + Sbjct: 289 EAIDYIKYLHTHKNAYLD 306

PyMOL of 2nzw

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		422
2nzw_A		371	Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {H	3e-29
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A* Length = 371	Back alignment and structure

 Score =  116 bits (291), Expect = 3e-29
 Identities = 42/223 (18%), Positives = 69/223 (30%), Gaps = 31/223 (13%)

Query: 199 DIFISYHAEDDVQSTYAGALFHNGRNYHVSSYKNNDT-------LVYWSSSRC-LPRRNQ 250
           D    Y  +D+               +       ND           + +S    P RN 
Sbjct: 138 DTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNA 197

Query: 251 LAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLA 310
              +L ++ P    G   N                           + +  +S YKF L 
Sbjct: 198 FYDALNSIEPVTGGGSVRNT--------------------LGYNVKNKNEFLSQYKFNLC 237

Query: 311 IENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKAL 370
            ENT    YVTEK+  +  S  +PIY+G+P+V     P S ++   F + +E   ++K L
Sbjct: 238 FENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYL 297

Query: 371 ADDPVAYAEYHAWRRCGVLGNYGKTRSVSLDTLPCRLCEAVSR 413
                AY +         L           +    ++      
Sbjct: 298 HTHKNAYLDMLYENPLNTLDGKAYFYQ---NLSFKKILAFFKT 337

PyMOL of 2nzw

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		422
2nzw_A		371	Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {H	100.0
3qhp_A		166	Type 1 capsular polysaccharide biosynthesis prote	91.9

>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*	Back alignment and structure

Probab=100.00  E-value=4.5e-61  Score=486.73  Aligned_cols=263  Identities=19%  Similarity=0.162  Sum_probs=206.3

Q ss_pred             ceEEEEEeecCCCCC-----CC--CccCCCC-CCeEEeccCCCCCCCCEEEEeCCCC-----CCCCCCCCcceEeeccCC
Q 014584          124 VSVLVKGWTWIPDNL-----DN--LYSCRCG-ISCLWTKSSVLADHPDALLFESSTP-----PLQRRNGDPLRVYMELEA  190 (422)
Q Consensus       124 ~~~lil~W~w~p~~l-----~~--~~~c~C~-~~C~~T~dr~~~~~aDAVVFh~~~P-----p~~R~~~qq~~Vf~s~Es  190 (422)
                      .+++|+.|+-..+..     ..  +.  .|+ .+|.+|.||+.+++|| ||||....     |..|++ .|+|||+++|+
T Consensus        23 k~~~iL~w~~~wg~~~~~~~~~~~~~--~c~~~~C~iT~dr~~~~~aD-vVFh~~~~~~~~lp~~R~~-~Q~fv~~~~Es   98 (371)
T 2nzw_A           23 PPPLKIAVANWWGDEEIKEFKNSVLY--FILSQRYTITLHQNPNEFSD-LVFGNPLGSARKILSYQNA-KRVFYTGENES   98 (371)
T ss_dssp             CCEEEEECCTTCCHHHHHHHHTSHHH--HHHHTTSEEEEECCTTBCCS-EEEECCCTHHHHHHHHHCS-EEEECCSSSCC
T ss_pred             CCCEEEEEECCCCCCccccccccccc--ccCCCCeEEeeCCCcccccc-EEEcCCCcccccCCCCCCC-CCEEEEEeecC
Confidence            478888898654431     11  12  243 4899999999999999 99998642     333444 56799999999


Q ss_pred             CCCC--------------CCCCCcccccccc-------CCccccccc-----ccccCCC-cc------c-----cccCCC
Q 014584          191 GRKR--------------SGCEDIFISYHAE-------DDVQSTYAG-----ALFHNGR-NY------H-----VSSYKN  232 (422)
Q Consensus       191 p~~~--------------~~~~n~~MTYR~D-------SDI~~pYg~-----~~~~~~~-~~------~-----~~~~k~  232 (422)
                      |...              .++||||||||+|       |||+.|||.     ....... .+      .     ......
T Consensus        99 P~~~~~d~~ig~d~~~~~~~~FN~TmtYr~d~~~~~~~SDi~~pYg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  178 (371)
T 2nzw_A           99 PNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPL  178 (371)
T ss_dssp             CCTTTCSEEEESSCCBCGGGEEECCHHHHHHHHHHHHTCBTTCSSCCCTTSGGGSSCCBSCHHHHCHHHHHHHTTSSCTT
T ss_pred             CccccccccccccccccCCCeEEEEEEeeeccccccccCceeccCccccccchhcccccccccccchhhhhhhhccccCC
Confidence            9532              3568999999999       999999984     1111111 00      0     112357


Q ss_pred             CcceEEEEccCCcc-hHHHHHHHHHhcCCeeEeccCcCCCCCcccccccCCCCCCCCCCCCccchhhhhhcccceEEEEe
Q 014584          233 NDTLVYWSSSRCLP-RRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFVLAI  311 (422)
Q Consensus       233 K~klvaW~vSNC~~-~R~~~v~~L~k~i~VD~yGkC~~n~~~~~~~l~~~p~C~~~~~~~~~~~d~~~~~l~~YKFyLAF  311 (422)
                      |+++|+|++|||.+ .|.+|+++|+++++||+||+|+++.+..       .             +++.+++++|||||||
T Consensus       179 K~k~v~wvvSnc~~~~R~~~~~~L~k~i~Vd~~G~c~~~~~~~-------~-------------~~~~~~l~~YKFyLaf  238 (371)
T 2nzw_A          179 KRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYN-------V-------------KNKNEFLSQYKFNLCF  238 (371)
T ss_dssp             SSEEEEECCSCCCCHHHHHHHHHHTTTSCCEECSSTTCCSSSC-------C-------------SCHHHHHTTEEEEEEE
T ss_pred             CceEEEEEEeCCCcHHHHHHHHHHhCcCCEeeCCCccCCCCCc-------c-------------ccHHHHHhcCcEEEEE
Confidence            89999999999986 7999999999999999999999864210       0             1245678999999999


Q ss_pred             ecCCCCCCchHHHhhhhcCCeeEEEeCCCccccccCCCCcccCCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHhcCcCCC
Q 014584          312 ENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCGVLGN  391 (422)
Q Consensus       312 ENS~c~DYVTEKl~~AL~aGsVPIy~G~~n~~~~~Pp~SfI~v~DF~S~~eLA~yLk~Ld~n~~~Y~eYf~WR~~~~~~~  391 (422)
                      |||+|+||||||||+||.+|+||||||++||.+++||+|||+++||+|+++||+||++|++|+++|++||.||....+..
T Consensus       239 ENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp~SfI~~~dF~s~~~La~yL~~L~~n~~~Y~~y~~w~~~~~i~~  318 (371)
T 2nzw_A          239 ENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDG  318 (371)
T ss_dssp             CSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCGGGSEEGGGSSSHHHHHHHHHHHHTCHHHHHHHHHSCSSCEETT
T ss_pred             eccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCCCCceEEcccCCCHHHHHHHHHHHhcCHHHHHHHHhcCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986543321


Q ss_pred             cccccccCCCChhhHHHHHHHh
Q 014584          392 YGKTRSVSLDTLPCRLCEAVSR  413 (422)
Q Consensus       392 y~~~~~~~~~~~~CrLC~~L~~  413 (422)
                      ..   ..-.+.+.|++|+.+.+
T Consensus       319 ~~---~~y~~~~~c~lc~~l~~  337 (371)
T 2nzw_A          319 KA---YFYQNLSFKKILAFFKT  337 (371)
T ss_dssp             EE---CCGGGCCHHHHHHHHHH
T ss_pred             cc---ccccccchhHHHHHHHH
Confidence            10   01123468999998865

PyMOL of 2nzw

>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		422
d2nzwa1		349	c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase Fu	6e-27

>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT {Helicobacter pylori [TaxId: 210]} Length = 349	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: FucT-like
domain: Alpha1,3-fucosyltransferase FucT
species: Helicobacter pylori [TaxId: 210]

 Score =  108 bits (270), Expect = 6e-27
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 20/145 (13%)

Query: 240 SSSRCLPRRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLH 299
           +S+   P RN    +L ++ P    G   N +G                +V  K      
Sbjct: 187 ASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGY---------------NVKNKNE---- 227

Query: 300 CAMSHYKFVLAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGS 359
             +S YKF L  ENT    YVTEK+  +  S  +PIY+G+P+V     P S ++   F +
Sbjct: 228 -FLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKN 286

Query: 360 MEELASFVKALADDPVAYAEYHAWR 384
            +E   ++K L     AY +     
Sbjct: 287 FDEAIDYIKYLHTHKNAYLDMLYEN 311

PyMOL of d2nzwa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		422
d2nzwa1		349	Alpha1,3-fucosyltransferase FucT {Helicobacter pyl	100.0

>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: FucT-like
domain: Alpha1,3-fucosyltransferase FucT
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=6.3e-37  Score=306.02  Aligned_cols=138  Identities=26%  Similarity=0.327  Sum_probs=126.8

Q ss_pred             CCCCcceEEEEccCCcc-hHHHHHHHHHhcCCeeEeccCcCCCCCcccccccCCCCCCCCCCCCccchhhhhhcccceEE
Q 014584          230 YKNNDTLVYWSSSRCLP-RRNQLAKSLLNLLPYHSFGKCLNNVGGLDMALAFYPECANDPSVTPKWWDHLHCAMSHYKFV  308 (422)
Q Consensus       230 ~k~K~klvaW~vSNC~~-~R~~~v~~L~k~i~VD~yGkC~~n~~~~~~~l~~~p~C~~~~~~~~~~~d~~~~~l~~YKFy  308 (422)
                      .++|++.++|++|||.. .|.+++++|+++.+||+||+|++|.++..                    +.+.+++++|||+
T Consensus       176 ~~~K~kFcs~v~Sn~~~~~R~~~~~~L~k~~~Vd~~G~~~nn~~~~~--------------------~~K~~~l~~ykF~  235 (349)
T d2nzwa1         176 DPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVRNTLGYNV--------------------KNKNEFLSQYKFN  235 (349)
T ss_dssp             CTTSSEEEEECCSCCCCHHHHHHHHHHTTTSCCEECSSTTCCSSSCC--------------------SCHHHHHTTEEEE
T ss_pred             ccccCceEEEEEcCCCCchHHHHHHHHhccCeecccCccccCCCCch--------------------hhHHHHHhCCCeE
Confidence            45789999999999965 79999999999999999999999865321                    1355689999999


Q ss_pred             EEeecCCCCCCchHHHhhhhcCCeeEEEeCCCccccccCCCCcccCCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 014584          309 LAIENTMTESYVTEKLFYSLDSGAVPIYFGAPNVWDFVPPHSIIDGTKFGSMEELASFVKALADDPVAYAEYHAWRRCG  387 (422)
Q Consensus       309 LAFENS~c~DYVTEKl~~AL~aGsVPIy~G~~n~~~~~Pp~SfI~v~DF~S~~eLA~yLk~Ld~n~~~Y~eYf~WR~~~  387 (422)
                      |||||+.|+||||||||+||.+|+||||||++++++++||+|||+++||+|+++|+++|+.|++|+++|++|+.|+...
T Consensus       236 l~~EN~~~~~YvTEKi~da~~~g~iPIy~G~~~i~~~f~~~sfI~~~df~s~~el~~~i~~l~~n~~~Y~~~~~~~~~~  314 (349)
T d2nzwa1         236 LCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYENPLN  314 (349)
T ss_dssp             EEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCGGGSEEGGGSSSHHHHHHHHHHHHTCHHHHHHHHHSCSSC
T ss_pred             EEECCcCCCCCcchHHHHHHhCCeEEEEECCCcHHHcCCCccEEEhhhCCCHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998643

PyMOL of d2nzwa1