Query 014586
Match_columns 422
No_of_seqs 118 out of 139
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 14:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 84.1 2.9 0.0001 44.3 8.6 87 289-394 119-205 (562)
2 3twe_A Alpha4H; unknown functi 66.8 7.2 0.00025 25.5 3.7 22 253-274 3-24 (27)
3 3hls_A Guanylate cyclase solub 65.8 2.4 8.2E-05 33.0 1.6 16 389-404 49-64 (66)
4 3f4m_A Tumor necrosis factor, 56.2 1.2E+02 0.004 27.5 11.6 116 234-377 28-156 (161)
5 1deq_A Fibrinogen (alpha chain 50.2 48 0.0016 33.9 8.3 39 366-405 181-219 (390)
6 1z23_A CRK-associated substrat 30.8 2.4E+02 0.0081 25.6 8.9 30 138-167 20-61 (163)
7 3mp7_B Preprotein translocase 26.9 18 0.00061 27.9 0.7 32 190-221 2-33 (61)
8 3fx7_A Putative uncharacterize 24.7 1.3E+02 0.0046 25.0 5.7 32 194-226 9-40 (94)
9 4g63_A Cytosolic IMP-GMP speci 21.2 74 0.0025 33.0 4.2 11 261-271 349-359 (470)
10 1m1j_A Fibrinogen alpha subuni 21.1 3.6E+02 0.012 28.3 9.2 19 288-306 133-151 (491)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.07 E-value=2.9 Score=44.26 Aligned_cols=87 Identities=13% Similarity=0.267 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHH
Q 014586 289 FAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYAN 368 (422)
Q Consensus 289 l~~lqq~l~~QRq~Vk~LK~~SLWsrt~d~vV~kLvriV~~i~~rI~~VFG~~~~~~~~~~~~~~~~TLG~AgLALHYAN 368 (422)
+..|+.+|..|-+.++.|+. ++++.+.++-|-=.-|-..|..-.|+..-.... .--| =-|-|
T Consensus 119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~------~vd~------~sY~~ 180 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR------EVDL------KDYED 180 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCC------CCCH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchhee------ecch------HHHHH
Confidence 44555555555555555553 345554444443344455666655755321111 1111 14899
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHhhh
Q 014586 369 IILQIDSLVARSSSMPPSTRDALYQS 394 (422)
Q Consensus 369 vIi~IEkLvs~p~~v~~~aRD~LY~m 394 (422)
+==|+|.+. ...+.|...|..||.|
T Consensus 181 ~QKQLeQv~-a~dL~p~~~~q~Lp~l 205 (562)
T 3ghg_A 181 QQKQLEQVI-AKDLLPSRDRQHLPLI 205 (562)
T ss_dssp HHHHHHHHH-TTCCCCSCCCC-----
T ss_pred HHHHHHHHh-hcccCCccccccchhc
Confidence 999999976 5667787788888876
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=66.80 E-value=7.2 Score=25.53 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q 014586 253 TAELYNELQILDRFEQDCQHKR 274 (422)
Q Consensus 253 Ta~LY~ELeaL~~lEq~~rrk~ 274 (422)
.-+||.|||-|.+-=..+|+|+
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999998877666666654
No 3
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=65.82 E-value=2.4 Score=32.98 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=11.1
Q ss_pred HHHhhhCchhHHHHHH
Q 014586 389 DALYQSLPPSIKSALR 404 (422)
Q Consensus 389 D~LY~mLP~sIRsaLR 404 (422)
+=||+|||++|-..|+
T Consensus 49 ~LL~~mLP~~VA~~Lk 64 (66)
T 3hls_A 49 TLLYSVLPPSVANELR 64 (66)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHh
Confidence 4577777777776665
No 4
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=56.23 E-value=1.2e+02 Score=27.53 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHhhhcCC------CCCCCCCccHHHHHHHHHHHH
Q 014586 234 QLKQEAELLMEQLMTLVQHTAELYN-------ELQILDRFEQDCQHKRQEEDN------PVGSQKGESFAILRAELKSQR 300 (422)
Q Consensus 234 ~~~k~ae~km~kmerlV~~Ta~LY~-------ELeaL~~lEq~~rrk~~~~~~------~~~~~~g~~l~~lqq~l~~QR 300 (422)
+.+++|++.++.+.+.|-...-||+ ||..+++|-+.+ +.... -+... =....|.+-+..-|
T Consensus 28 ~nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~----~~~amt~iSF~eVdfT--fD~~~L~~~L~ec~ 101 (161)
T 3f4m_A 28 HSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKL----RQGAMTALSFGEVDFT--FEAAVLAGLLTECR 101 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH----HHHHHHHHHHTSTTSC--CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHH----HHHHHHHhhhhccCcc--ccHHHHHHHHHHHH
Confidence 4579999999999999999999996 555555544444 22110 00111 12344666666555
Q ss_pred HHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHh
Q 014586 301 KQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLV 377 (422)
Q Consensus 301 q~Vk~LK~~SLWsrt~d~vV~kLvriV~~i~~rI~~VFG~~~~~~~~~~~~~~~~TLG~AgLALHYANvIi~IEkLv 377 (422)
+....|=+.-|=-+| +.||.+||+-.....-...-..+ -..-|--+|+--+++|+
T Consensus 102 ~lL~~lv~~HLT~KS---------------~~Ri~~vF~~f~~~efL~~lf~~-------~~~~~L~kI~~~Lnkll 156 (161)
T 3f4m_A 102 DVLLELVEHHLTPKS---------------HGRIRHVFDHFSDPGLLTALYGP-------DFTQHLGKICDGLRKLL 156 (161)
T ss_dssp HHHHHHHTTTSCHHH---------------HHHHHHHHHHHTCHHHHHHHTSG-------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcch---------------HHHHHHHHHHhCCHHHHHHHhCc-------HHHHHHHHHHHHHHHHH
Confidence 555544444443333 57888888643211000000011 34456667777777765
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.21 E-value=48 Score=33.90 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCchHHHHhhhCchhHHHHHHh
Q 014586 366 YANIILQIDSLVARSSSMPPSTRDALYQSLPPSIKSALRS 405 (422)
Q Consensus 366 YANvIi~IEkLvs~p~~v~~~aRD~LY~mLP~sIRsaLRa 405 (422)
|=|+-=|+|.+. .-.+.|.-.|-.|+.+=|..++..+..
T Consensus 181 ye~qqKQL~qv~-a~~llP~~~~q~lp~LK~~p~kd~vP~ 219 (390)
T 1deq_A 181 YKNQQKQLEQVI-AINLLPSRDIQYLPILKMSTITGPVPR 219 (390)
T ss_pred HHHHHHHHHhhh-hhccccccccccccccccccccccCCh
Confidence 556666666643 333344444444544444444433333
No 6
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=30.84 E-value=2.4e+02 Score=25.60 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHh---------hhcC---ChHHHHHHhhhc
Q 014586 138 AFEVANTIVKGSNL---------MLSI---SESSVRQLKEVV 167 (422)
Q Consensus 138 AFEVAntMsK~~~L---------~~SL---Sd~eI~rLr~ev 167 (422)
==||+..++++..+ ||+. -+.+|..||.-+
T Consensus 20 Q~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~ 61 (163)
T 1z23_A 20 QQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAV 61 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHH
Confidence 34677777777776 8877 345565555543
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=26.88 E-value=18 Score=27.88 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=23.7
Q ss_pred HHHHHHHhHHHhhHhhhhccCCCccccchhHH
Q 014586 190 ADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRY 221 (422)
Q Consensus 190 AEk~eeL~~~A~~VaRlG~rC~DP~lh~fdr~ 221 (422)
++..|.++.|.++..|+=++|+-|.|..|-.+
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 56778899999999999999999999988654
No 8
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.73 E-value=1.3e+02 Score=24.98 Aligned_cols=32 Identities=19% Similarity=0.507 Sum_probs=15.0
Q ss_pred HHHhHHHhhHhhhhccCCCccccchhHHHHHHh
Q 014586 194 DDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKIS 226 (422)
Q Consensus 194 eeL~~~A~~VaRlG~rC~DP~lh~fdr~F~~l~ 226 (422)
+|++.||.+.-||-..=.+ .|..+..-|+.|.
T Consensus 9 eElr~Fa~~L~~F~d~Lq~-~~~~L~~~f~~L~ 40 (94)
T 3fx7_A 9 EEVREFVGHLERFKELLRE-EVNSLSNHFHNLE 40 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc
Confidence 4455555555544332222 3445555555553
No 9
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=21.21 E-value=74 Score=33.02 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=5.7
Q ss_pred hHHHHHHHHHH
Q 014586 261 QILDRFEQDCQ 271 (422)
Q Consensus 261 eaL~~lEq~~r 271 (422)
....++|+.+.
T Consensus 349 ~~~~~l~~~~~ 359 (470)
T 4g63_A 349 AIKKELEQKYV 359 (470)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455666553
No 10
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.07 E-value=3.6e+02 Score=28.31 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHHHHHHhh
Q 014586 288 SFAILRAELKSQRKQVKIL 306 (422)
Q Consensus 288 ~l~~lqq~l~~QRq~Vk~L 306 (422)
++..||.-|+.||.++++|
T Consensus 133 ~IrvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555554
Done!