Query 014587
Match_columns 422
No_of_seqs 148 out of 1133
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.5 3.2E-14 7E-19 134.4 7.4 66 352-420 88-154 (205)
2 PRK11570 peptidyl-prolyl cis-t 99.2 2.2E-11 4.7E-16 114.6 7.6 66 352-420 89-155 (206)
3 KOG0544 FKBP-type peptidyl-pro 99.2 2.7E-11 5.8E-16 103.8 6.9 52 365-419 1-54 (108)
4 PRK10902 FKBP-type peptidyl-pr 99.0 4.9E-10 1.1E-14 109.5 7.9 66 352-420 133-199 (269)
5 KOG0552 FKBP-type peptidyl-pro 98.9 2E-09 4.3E-14 103.6 8.1 57 361-419 116-173 (226)
6 KOG0549 FKBP-type peptidyl-pro 98.9 2E-09 4.4E-14 100.8 7.2 56 363-419 66-122 (188)
7 TIGR03516 ppisom_GldI peptidyl 98.7 7.9E-08 1.7E-12 88.8 8.3 59 359-418 63-121 (177)
8 PF00254 FKBP_C: FKBP-type pep 97.8 4.7E-05 1E-09 61.4 5.3 38 380-418 3-41 (94)
9 KOG0543 FKBP-type peptidyl-pro 95.5 0.035 7.5E-07 58.1 6.9 49 364-418 83-133 (397)
10 TIGR00115 tig trigger factor. 85.4 1.3 2.7E-05 45.3 4.9 36 381-419 146-181 (408)
11 PRK01490 tig trigger factor; P 83.4 1.7 3.8E-05 44.8 5.0 36 381-419 157-192 (435)
12 KOG0545 Aryl-hydrocarbon recep 77.6 1.9 4.2E-05 43.8 2.9 54 364-419 9-66 (329)
13 PF01346 FKBP_N: Domain amino 56.6 6.6 0.00014 33.5 1.6 20 352-371 105-124 (124)
14 COG0544 Tig FKBP-type peptidyl 38.1 42 0.00091 35.9 4.4 35 382-419 158-192 (441)
15 PF08729 HUN: HPC2 and ubinucl 31.6 24 0.00051 27.4 1.0 12 36-47 18-29 (55)
16 PF15260 FAM219A: Protein fami 31.4 33 0.00071 31.4 2.0 22 36-57 88-110 (125)
17 KOG3540 Beta amyloid precursor 26.4 39 0.00084 37.2 1.8 31 16-46 194-224 (615)
18 KOG1824 TATA-binding protein-i 22.4 42 0.0009 39.8 1.2 22 27-48 323-344 (1233)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.2e-14 Score=134.35 Aligned_cols=66 Identities=36% Similarity=0.656 Sum_probs=63.0
Q ss_pred ccccccCCceecCCCeEEEEeeeCCCCCCCCCCCCeEEEEEEEEecCCCceeccCCCC-CCeEEEcCcee
Q 014587 352 SAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGDIL 420 (422)
Q Consensus 352 ~~~~k~s~vrtlpsGL~ievLk~G~~cG~kpk~GDtVsVhYtGkL~~DGkvFDSS~~r-kPftF~LG~vI 420 (422)
.++++..+++++++||+|.+|..|+ |+.|+.|++|+|||+|+| .||++||||+.| +||.|.||.+|
T Consensus 88 ~~~~k~~~v~~~~sgl~y~~~~~G~--G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~rg~p~~f~l~~vI 154 (205)
T COG0545 88 EKNAKEKGVKTLPSGLQYKVLKAGD--GAAPKKGDTVTVHYTGTL-IDGTVFDSSYDRGQPAEFPLGGVI 154 (205)
T ss_pred hhhcccCCceECCCCcEEEEEeccC--CCCCCCCCEEEEEEEEec-CCCCccccccccCCCceeecCCee
Confidence 5678888999999999999999999 999999999999999999 999999999987 99999999887
No 2
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.22 E-value=2.2e-11 Score=114.58 Aligned_cols=66 Identities=30% Similarity=0.564 Sum_probs=61.0
Q ss_pred ccccccCCceecCCCeEEEEeeeCCCCCCCCCCCCeEEEEEEEEecCCCceeccCCCC-CCeEEEcCcee
Q 014587 352 SAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGDIL 420 (422)
Q Consensus 352 ~~~~k~s~vrtlpsGL~ievLk~G~~cG~kpk~GDtVsVhYtGkL~~DGkvFDSS~~r-kPftF~LG~vI 420 (422)
..+++..++.++++||+|.+|+.|+ |..|..|++|.|||+|+| .||++||+||.+ .|+.|.||.+|
T Consensus 89 ~~~~k~~gv~~t~sGl~y~vi~~G~--G~~p~~~d~V~v~Y~g~l-~dG~vfdss~~~g~P~~f~l~~vi 155 (206)
T PRK11570 89 EENAKKEGVNSTESGLQFRVLTQGE--GAIPARTDRVRVHYTGKL-IDGTVFDSSVARGEPAEFPVNGVI 155 (206)
T ss_pred HHhhhcCCcEECCCCcEEEEEeCCC--CCCCCCCCEEEEEEEEEE-CCCCEEEeccCCCCCeEEEeechh
Confidence 4577788999999999999999999 999999999999999999 899999999976 89999999765
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.7e-11 Score=103.81 Aligned_cols=52 Identities=35% Similarity=0.665 Sum_probs=48.4
Q ss_pred CCeEEEEeeeCCCCC-CCCCCCCeEEEEEEEEecCCCceeccCCCC-CCeEEEcCce
Q 014587 365 NGLVIQKLGTGKPDG-KVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGDI 419 (422)
Q Consensus 365 sGL~ievLk~G~~cG-~kpk~GDtVsVhYtGkL~~DGkvFDSS~~r-kPftF~LG~v 419 (422)
.|+.+++|..|+ | .+|+.|++|+|||+|+| .||+.||||+.+ .||.|++|..
T Consensus 1 mGv~~~~i~~Gd--g~tfpK~Gqtvt~hYtg~L-~dG~kfDSs~dr~kPfkf~IGkg 54 (108)
T KOG0544|consen 1 MGVEKQVISPGD--GRTFPKKGQTVTVHYTGTL-QDGKKFDSSRDRGKPFKFKIGKG 54 (108)
T ss_pred CCceeEEeeCCC--CcccCCCCCEEEEEEEeEe-cCCcEeecccccCCCeeEEecCc
Confidence 488999999999 7 58999999999999999 999999999998 9999999864
No 4
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.03 E-value=4.9e-10 Score=109.54 Aligned_cols=66 Identities=26% Similarity=0.454 Sum_probs=61.0
Q ss_pred ccccccCCceecCCCeEEEEeeeCCCCCCCCCCCCeEEEEEEEEecCCCceeccCCCC-CCeEEEcCcee
Q 014587 352 SAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGDIL 420 (422)
Q Consensus 352 ~~~~k~s~vrtlpsGL~ievLk~G~~cG~kpk~GDtVsVhYtGkL~~DGkvFDSS~~r-kPftF~LG~vI 420 (422)
..+++..+|.++++||+|.+|..|+ |..|+.||+|.|||+|+| .||++||+++.+ .|+.|.++.+|
T Consensus 133 ~~~~k~~gv~~t~sGl~y~Vi~~G~--G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~~g~p~~f~l~~vi 199 (269)
T PRK10902 133 EKFAKEKGVKTTSTGLLYKVEKEGT--GEAPKDSDTVVVNYKGTL-IDGKEFDNSYTRGEPLSFRLDGVI 199 (269)
T ss_pred HHhccCCCcEECCCccEEEEEeCCC--CCCCCCCCEEEEEEEEEe-CCCCEeeccccCCCceEEecCCcc
Confidence 5677788999999999999999999 999999999999999999 899999999976 89999998765
No 5
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2e-09 Score=103.56 Aligned_cols=57 Identities=56% Similarity=0.917 Sum_probs=53.8
Q ss_pred eecCCCeEEEEeeeCCCCCCCCCCCCeEEEEEEEEecCCCceeccCCCCCCeE-EEcCce
Q 014587 361 RTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLK-FHLGDI 419 (422)
Q Consensus 361 rtlpsGL~ievLk~G~~cG~kpk~GDtVsVhYtGkL~~DGkvFDSS~~rkPft-F~LG~v 419 (422)
+++++||+|+.|+.|+ |+.|..|+.|.|||.|+|..+|++||+++.+.||. |+||..
T Consensus 116 ~tl~~Gl~y~D~~vG~--G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g 173 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGS--GPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSG 173 (226)
T ss_pred eecCCCcEEEEEEecC--CCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCC
Confidence 8999999999999999 99999999999999999944999999999999999 999864
No 6
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2e-09 Score=100.84 Aligned_cols=56 Identities=34% Similarity=0.478 Sum_probs=51.1
Q ss_pred cCCCeEEEEeeeCCCCCCCCCCCCeEEEEEEEEecCCCceeccCCCC-CCeEEEcCce
Q 014587 363 LPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGDI 419 (422)
Q Consensus 363 lpsGL~ievLk~G~~cG~kpk~GDtVsVhYtGkL~~DGkvFDSS~~r-kPftF~LG~v 419 (422)
...+|+|.+++....|..+++.||+|++||+|.| .||++|||||.+ +||+|+||..
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~rg~P~~f~LG~g 122 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSL-EDGTKFDSSYSRGAPFTFTLGTG 122 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEe-cCCCEEeeeccCCCCEEEEeCCC
Confidence 3568999999987779999999999999999999 999999999998 7999999865
No 7
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=98.66 E-value=7.9e-08 Score=88.82 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=53.0
Q ss_pred CceecCCCeEEEEeeeCCCCCCCCCCCCeEEEEEEEEecCCCceeccCCCCCCeEEEcCc
Q 014587 359 LLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGD 418 (422)
Q Consensus 359 ~vrtlpsGL~ievLk~G~~cG~kpk~GDtVsVhYtGkL~~DGkvFDSS~~rkPftF~LG~ 418 (422)
.+.++++|++|.++..+.++|..|+.||+|+|||+|++ .+|++|++++.+.|+.|.+|.
T Consensus 63 ~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~-~dG~v~~ss~~~~P~~f~vg~ 121 (177)
T TIGR03516 63 KYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRA-LDGDVIYSEEELGPQTYKVDQ 121 (177)
T ss_pred CceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEe-CCCCEEEeCCCCCCEEEEeCC
Confidence 45788999999999875544889999999999999999 899999999988899999985
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=97.76 E-value=4.7e-05 Score=61.39 Aligned_cols=38 Identities=39% Similarity=0.871 Sum_probs=34.6
Q ss_pred CCCCCCCeEEEEEEEEecCCCceeccCCCC-CCeEEEcCc
Q 014587 380 KVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGD 418 (422)
Q Consensus 380 ~kpk~GDtVsVhYtGkL~~DGkvFDSS~~r-kPftF~LG~ 418 (422)
..|+.||+|.|||+|++ .+|++|++++.. .|+.|.+|.
T Consensus 3 ~~~~~gd~V~i~y~~~~-~~g~~~~~~~~~~~~~~~~~g~ 41 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRL-EDGKVFDSSYQEGEPFEFRLGS 41 (94)
T ss_dssp SSBSTTSEEEEEEEEEE-TTSEEEEETTTTTSEEEEETTS
T ss_pred ccCCCCCEEEEEEEEEE-CCCcEEEEeeecCcceeeeecc
Confidence 56999999999999999 699999999765 899999995
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.035 Score=58.07 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=42.4
Q ss_pred CCCeEEEEeeeCCCCC--CCCCCCCeEEEEEEEEecCCCceeccCCCCCCeEEEcCc
Q 014587 364 PNGLVIQKLGTGKPDG--KVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGD 418 (422)
Q Consensus 364 psGL~ievLk~G~~cG--~kpk~GDtVsVhYtGkL~~DGkvFDSS~~rkPftF~LG~ 418 (422)
+.||+..+|+.|. | ..|..|.+|.|||.|.| .+| +|+.+-- .|.|.+|.
T Consensus 83 Dg~iiKriir~G~--gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~~~--~fe~~~Ge 133 (397)
T KOG0543|consen 83 DGGIIKRIIREGE--GDYSRPNKGAVVKVHLEGEL-EDG-VFDQREL--RFEFGEGE 133 (397)
T ss_pred CCceEEeeeecCC--CCCCCCCCCcEEEEEEEEEE-CCc-ceecccc--ceEEecCC
Confidence 8899999999999 6 68999999999999999 777 8877643 48999887
No 10
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=85.41 E-value=1.3 Score=45.32 Aligned_cols=36 Identities=19% Similarity=0.526 Sum_probs=30.9
Q ss_pred CCCCCCeEEEEEEEEecCCCceeccCCCCCCeEEEcCce
Q 014587 381 VAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGDI 419 (422)
Q Consensus 381 kpk~GDtVsVhYtGkL~~DGkvFDSS~~rkPftF~LG~v 419 (422)
.++.||.|.|+|+|++ +|..|+++. ..|+.|.||..
T Consensus 146 ~~~~gD~V~v~~~~~~--dg~~~~~~~-~~~~~~~lg~~ 181 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI--DGEAFEGGK-AENFSLELGSG 181 (408)
T ss_pred ccCCCCEEEEEEEEEE--CCEECcCCC-CCCeEEEECCC
Confidence 4788999999999987 899999874 57999999853
No 11
>PRK01490 tig trigger factor; Provisional
Probab=83.44 E-value=1.7 Score=44.76 Aligned_cols=36 Identities=19% Similarity=0.521 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEEEEEecCCCceeccCCCCCCeEEEcCce
Q 014587 381 VAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGDI 419 (422)
Q Consensus 381 kpk~GDtVsVhYtGkL~~DGkvFDSS~~rkPftF~LG~v 419 (422)
.++.||.|+|+|+|++ +|..|+.+. ..+++|.||..
T Consensus 157 ~~~~gD~V~vd~~~~~--~g~~~~~~~-~~~~~~~lg~~ 192 (435)
T PRK01490 157 PAENGDRVTIDFVGSI--DGEEFEGGK-AEDFSLELGSG 192 (435)
T ss_pred cCCCCCEEEEEEEEEE--CCEECcCCC-CCceEEEEcCC
Confidence 4789999999999998 899998764 46899999864
No 12
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.59 E-value=1.9 Score=43.84 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=44.5
Q ss_pred CCCeEEEEeeeCCCCCCCC--CCCCeEEEEEEEEecC-CCceeccCCCC-CCeEEEcCce
Q 014587 364 PNGLVIQKLGTGKPDGKVA--APGKKISVLYTGKLKE-NGQVFDSNLGS-TPLKFHLGDI 419 (422)
Q Consensus 364 psGL~ievLk~G~~cG~kp--k~GDtVsVhYtGkL~~-DGkvFDSS~~r-kPftF~LG~v 419 (422)
-.||+..+|..|+ |..| ..|..|.+||...... .++++|.|+.. +|+.+.+|..
T Consensus 9 ~~gv~Kril~~G~--g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkk 66 (329)
T KOG0545|consen 9 VEGVKKRILHGGT--GELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKK 66 (329)
T ss_pred chhhhHhhccCCC--ccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccc
Confidence 4689999999999 8755 6799999999987633 47799999875 9999998864
No 13
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=56.58 E-value=6.6 Score=33.53 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=15.5
Q ss_pred ccccccCCceecCCCeEEEE
Q 014587 352 SAEGKLSLLRTLPNGLVIQK 371 (422)
Q Consensus 352 ~~~~k~s~vrtlpsGL~iev 371 (422)
..+++..+|.++++||+|+|
T Consensus 105 a~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 105 AENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHTSTTEEE-TTS-EEEE
T ss_pred HHHcCCCCCEECCCCCeeeC
Confidence 46777889999999999986
No 14
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=38.15 E-value=42 Score=35.90 Aligned_cols=35 Identities=20% Similarity=0.541 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEEEEecCCCceeccCCCCCCeEEEcCce
Q 014587 382 AAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGDI 419 (422)
Q Consensus 382 pk~GDtVsVhYtGkL~~DGkvFDSS~~rkPftF~LG~v 419 (422)
++.||+|+|.|.|+. ||..|...- ..-|.|.||..
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~-ae~~~l~lGs~ 192 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGK-AENFSLELGSG 192 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCcc-ccCeEEEEcCC
Confidence 899999999999966 999997652 35788888764
No 15
>PF08729 HUN: HPC2 and ubinuclein domain; InterPro: IPR014840 HPC2 is required for cell-cycle regulation of histone transcription []. It regulates transcription of the histone genes during the S-phase of the cell cycle by repressing transcription at other cell cycle stages. HPC2 mutants display synthetic interactions with FACT complex, which allows RNA Pol II to elongate through nucleosomes [].
Probab=31.56 E-value=24 Score=27.41 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=9.1
Q ss_pred CcccCcccCCCC
Q 014587 36 DKYDDSFINDAD 47 (422)
Q Consensus 36 D~YdD~FidDdD 47 (422)
++.+|+||||+.
T Consensus 18 YD~~D~FIDDsE 29 (55)
T PF08729_consen 18 YDTDDPFIDDSE 29 (55)
T ss_pred ccCCCCCcCCHH
Confidence 344489999998
No 16
>PF15260 FAM219A: Protein family FAM219A
Probab=31.38 E-value=33 Score=31.37 Aligned_cols=22 Identities=59% Similarity=1.060 Sum_probs=18.8
Q ss_pred Cccc-CcccCCCCCCccCCCCCC
Q 014587 36 DKYD-DSFINDADLDIIPPSPVS 57 (422)
Q Consensus 36 D~Yd-D~FidDdD~e~~~~sp~~ 57 (422)
|+|. |+--||.|+++++|-|+.
T Consensus 88 DGy~LDE~pDdEdLDLIPPk~~~ 110 (125)
T PF15260_consen 88 DGYRLDEIPDDEDLDLIPPKPVS 110 (125)
T ss_pred cccccccCCchhccccCCCcccc
Confidence 9999 666778899999999986
No 17
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=26.36 E-value=39 Score=37.24 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=22.4
Q ss_pred ccCccccccccccccCCCCCCcccCcccCCC
Q 014587 16 SYGEDIADTETERSTGHSDEDKYDDSFINDA 46 (422)
Q Consensus 16 S~GeDI~~Tdte~s~~~d~dD~YdD~FidDd 46 (422)
++.-|.+.++.+++++.|.+|+|+|+|...+
T Consensus 194 ~~~~~~~~~eede~dd~d~~d~~ede~~ees 224 (615)
T KOG3540|consen 194 TDKVDVAKTEEDEDDDDDYDDGYEDEYSEES 224 (615)
T ss_pred CCcccccccCcccCCcccccccccccccccc
Confidence 3445677888887777777899999884433
No 18
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=22.42 E-value=42 Score=39.78 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=15.1
Q ss_pred ccccCCCCCCcccCcccCCCCC
Q 014587 27 ERSTGHSDEDKYDDSFINDADL 48 (422)
Q Consensus 27 e~s~~~d~dD~YdD~FidDdD~ 48 (422)
..+.++.+||+|+|+|.||+|.
T Consensus 323 ~~~~ed~eDde~~deYsDDeD~ 344 (1233)
T KOG1824|consen 323 AMFLEDEEDDEQDDEYSDDEDM 344 (1233)
T ss_pred hhhhhccccchhccccccccch
Confidence 3344444667777899999985
Done!