BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014588
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/394 (51%), Positives = 270/394 (68%), Gaps = 3/394 (0%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58
Query: 88 FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K EV LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 59 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
+N A +Q+KKLY LF + D T +E+NP ET Q+V DAK+NFDDNA FRQK+IFA
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 238
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
+ D ++ +P E AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 239 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 298
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386
E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI A +++ LKVP+VVRLEG
Sbjct: 299 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEG 358
Query: 387 TNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
TNV + + IL SG+ + +A DL+DAA+KAV ++
Sbjct: 359 TNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 392
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/394 (50%), Positives = 269/394 (68%), Gaps = 3/394 (0%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 59
Query: 88 FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K EV LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 60 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
+N A +Q+KKLY LF + D T +E+NP ET Q+V DAK+NFDDNA FRQK+IFA
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 239
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
+ D ++ +P E AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 240 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 299
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386
E QV +AFK+LT+D KV+AILVNIFGGI+ +IA+GI A +++ LKVP+VVRLEG
Sbjct: 300 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKAXRELELKVPLVVRLEG 359
Query: 387 TNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
TNV + + IL SG+ + +A DL+DAA+KAV ++
Sbjct: 360 TNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 393
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/394 (50%), Positives = 269/394 (68%), Gaps = 3/394 (0%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 59
Query: 88 FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K EV LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 60 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
+N A +Q+KKLY LF + D T +E+NP ET Q+V DAK+NFDDNA FRQK+IFA
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 239
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
+ D ++ +P E AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 240 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 299
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386
E QV +AFK+LT+D KV+AILVNIFGGI+ +IA+GI A +++ LKVP+VVRLEG
Sbjct: 300 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKACRELELKVPLVVRLEG 359
Query: 387 TNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
TNV + + IL SG+ + +A DL+DAA+KAV ++
Sbjct: 360 TNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 393
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 310 bits (793), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/400 (44%), Positives = 249/400 (62%), Gaps = 22/400 (5%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
+N+HEYQ +L A+YG+ P G A + E ++A A P VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86 GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
GGV +V KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 57 A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
++DR + + + ++GG IE +AE+ P++I KV +D G + LA
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
K+ ++Q K++ +F E D L+EINPL T L+ D KL D NA FR
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
Query: 261 QKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPAN 320
Q ++ +RD +QEDPRE AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PAN
Sbjct: 226 QPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPAN 285
Query: 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPV 380
FLDVGG A++ +V EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A +V + VPV
Sbjct: 286 FLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPV 345
Query: 381 VVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
VVRLEG N + G + L +SG+ +I A+ L DAA++ V A+
Sbjct: 346 VVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV 385
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 179/400 (44%), Positives = 249/400 (62%), Gaps = 22/400 (5%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
+N+HEYQ +L A+YG+ P G A + E ++A A P VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86 GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
GGV +V KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 57 A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
++DR + + + ++GG IE +AE+ P++I KV +D G + LA
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
K+ ++Q K++ +F E D L+EINPL T L+ D KL D NA FR
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
Query: 261 QKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPAN 320
Q ++ +RD +QEDPRE AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PAN
Sbjct: 226 QPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPAN 285
Query: 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPV 380
FLDVGG A++ +V EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A +V + VPV
Sbjct: 286 FLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPV 345
Query: 381 VVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
VVRLEG N + G + L +SG+ +I A+ L DAA++ V A+
Sbjct: 346 VVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV 385
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 307 bits (787), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 248/400 (62%), Gaps = 22/400 (5%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
+N+HEYQ +L A+YG+ P G A + E ++A A P VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86 GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
GGV +V KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 57 A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
++DR + + + ++GG IE +AE+ P++I KV +D G + LA
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
K+ ++Q K++ +F E D L+ INPL T L+ D KL D NA FR
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALFR 225
Query: 261 QKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPAN 320
Q ++ +RD +QEDPRE AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PAN
Sbjct: 226 QPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPAN 285
Query: 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPV 380
FLDVGG A++ +V EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A +V + VPV
Sbjct: 286 FLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPV 345
Query: 381 VVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
VVRLEG N + G + L +SG+ +I A+ L DAA++ V A+
Sbjct: 346 VVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV 385
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 206/373 (55%), Gaps = 23/373 (6%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+HEYQ E++A+YG+ VP G VA E K I + F K +V+K+Q+ GGRG
Sbjct: 1 MNLHEYQAKEILARYGVPVPPG-KVAYTPEEAKRIAEEF--GKRVVIKAQVHVGGRGKA- 56
Query: 88 FKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
GGV + +E + A +LG + +G V KV + E + + E Y
Sbjct: 57 ------GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAG 103
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAP 204
++LDR +++ +GG IE++A + P I K ID G +A ++V GL
Sbjct: 104 LILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLE- 162
Query: 205 KVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI 264
+ N + + LY+ + D ++ EINPL T+ +VAADAK+ DDNA FR ++
Sbjct: 163 --GNLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDL 220
Query: 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDV 324
LR+ E P EV A+ Y+ LDG IG + NGAGL M T+D++ GG PANFLD+
Sbjct: 221 AELREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDI 280
Query: 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL 384
GG A V A K++ D VK + +NIFGGI + D +A G++ A ++ L PVV+R+
Sbjct: 281 GGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRV 340
Query: 385 EGTNVDQGKRILK 397
GT ++ K++L+
Sbjct: 341 AGTAEEEAKKLLE 353
>pdb|2W9Y|A Chain A, The Structure Of The Lipid Binding Protein Ce-Far-7 From
Caenorhabditis Elegans
Length = 140
Score = 35.4 bits (80), Expect = 0.063, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 162 SKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYK 221
S+ G I+++++K+P + ++ + E K +DGL+P A+E KKL
Sbjct: 46 SQCGEMIDEVSKKHPELGKRLATVL------EGNKKRLDGLSPA------AVEYAKKLIH 93
Query: 222 LFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 261
+ + C+L P+ + K+L L+ +D AA R+
Sbjct: 94 MVTTTLCSLTVGKPIDDADAKRLHQEFQSLSSEDQAALRK 133
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 1 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60
+ G++++ ++ L + G Q+ L + + ELM KYGI A S +E K
Sbjct: 95 LASGIVDRFMAEGLRIFGPSQRAAL--IEGSKAFAKELMKKYGIPTADHAAFTSYEEAKA 152
Query: 61 AI-QDAFPDHKELVVKSQILAGGRGL 85
I Q P +V+K+ LA G+G+
Sbjct: 153 YIEQKGAP----IVIKADGLAAGKGV 174
>pdb|3FLE|A Chain A, Se_1780 Protein Of Unknown Function From Staphylococcus
Epidermidis.
pdb|3FLE|B Chain B, Se_1780 Protein Of Unknown Function From Staphylococcus
Epidermidis
Length = 249
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 158 IIGCSKGGTSIEDLAEKY------PNMIVKVPI-DVFNGI--TDEDAAKVVDGLAPKVAD 208
+G S G S + Y P + +V I V+NGI +E+ +++ K +
Sbjct: 101 FVGHSXGNXSFAFYXKNYGDDRHLPQLKKEVNIAGVYNGILNXNENVNEIIVDKQGKPSR 160
Query: 209 RNDAIEQVKKLYKLFCESDCTLLEI 233
N A Q+ LYK++C + +L I
Sbjct: 161 XNAAYRQLLSLYKIYCGKEIEVLNI 185
>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
From Anaerococcus Prevotii
Length = 403
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFKSG 91
Y+ E KY +N + V + +E+K A+++ P ++VK+ L G +
Sbjct: 111 YKXKEAFKKYNVNTARHFVVRNENELKNALENLKLP----VIVKATDLQGSK-------- 158
Query: 92 LKGGVHIVKKEE 103
G++I KKEE
Sbjct: 159 ---GIYIAKKEE 167
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 288 IGLDGEIGCMVNGAGLAMATMDIIKLH------GGTPANFLDVGGNASEGQVVEAFKILT 341
+ L EIG AG+A A DII++ G +P + + G+ E V E ++L
Sbjct: 1033 VKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLM 1092
Query: 342 SDEKVKAILVNIFGGI-MKCDVIASGIVNA 370
++ +L+ GG+ DV+ + ++ A
Sbjct: 1093 ENQLRDRVLLRADGGLKTGWDVVMAALMGA 1122
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 38/151 (25%)
Query: 103 EVEDLAGKMLGQILVTKQTGPQGKIVS------------KVYLCEKLSLVNEMY-FAIML 149
E+ +L + + Q V + +G IVS E +SL Y A+ L
Sbjct: 7 EISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNL 66
Query: 150 DRKTAGPIIIGCSKGGTSIEDLAE----KYPNMIVKVPI------DVFN---------GI 190
+R + G +++G DLAE K I++VP+ V N G
Sbjct: 67 ERDSVGAVVMG------PYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP 120
Query: 191 TDEDAAKVVDGLAPKVADRNDAIEQVKKLYK 221
D D V+ +AP V +R + V+ YK
Sbjct: 121 LDHDGFSAVEAIAPGVIERQSVDQPVQTGYK 151
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 74 VKSQILAGGRGLGTFKSGLKGG-VHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVY 132
++ + A G+G GTF G G V + K+ + EDL + ++VT T G + V
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVT-ATEDSGGFSTSVD 309
Query: 133 LCEKLSLVNE 142
L +++ VN+
Sbjct: 310 LTIRVTDVND 319
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 74 VKSQILAGGRGLGTFKSGLKGG-VHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVY 132
++ + A G+G GTF G G V + K+ + EDL + ++VT T G + V
Sbjct: 246 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA-TEDSGGFSTSVD 304
Query: 133 LCEKLSLVNE 142
L +++ VN+
Sbjct: 305 LTIRVTDVND 314
>pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGL 92
+ G ++++ + +P G+ + DE + D+ L++ QI+ G T S
Sbjct: 572 WSGKQILS---VAIPNGIHLQRFDEGTTLLSPK--DNGMLIIDGQIIFGVVEKKTVGSSN 626
Query: 93 KGGVHIVKKEEVEDLAGKMLGQI 115
G +H+V +E+ + K+ G I
Sbjct: 627 GGLIHVVTREKGPQVCAKLFGNI 649
>pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGL 92
+ G ++++ + +P G+ + DE + D+ L++ QI+ G T S
Sbjct: 572 WSGKQILS---VAIPNGIHLQRFDEGTTLLSPK--DNGMLIIDGQIIFGVVEKKTVGSSN 626
Query: 93 KGGVHIVKKEEVEDLAGKMLGQI 115
G +H+V +E+ + K+ G I
Sbjct: 627 GGLIHVVTREKGPQVCAKLFGNI 649
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,910,613
Number of Sequences: 62578
Number of extensions: 499659
Number of successful extensions: 1597
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 26
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)