Query 014588
Match_columns 422
No_of_seqs 253 out of 2003
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00124 succinyl-CoA ligase [ 100.0 6E-84 1.3E-88 655.4 45.5 418 1-421 1-421 (422)
2 COG0045 SucC Succinyl-CoA synt 100.0 7.2E-80 1.6E-84 602.1 42.2 382 28-421 1-385 (387)
3 PRK14046 malate--CoA ligase su 100.0 2.2E-76 4.8E-81 599.4 44.5 384 28-422 1-387 (392)
4 TIGR01016 sucCoAbeta succinyl- 100.0 2.2E-74 4.8E-79 586.8 44.8 381 28-420 1-385 (386)
5 PRK00696 sucC succinyl-CoA syn 100.0 3.5E-73 7.6E-78 578.4 46.0 384 28-421 1-386 (388)
6 PLN02235 ATP citrate (pro-S)-l 100.0 2.1E-69 4.6E-74 542.0 41.1 370 28-418 4-417 (423)
7 KOG1447 GTP-specific succinyl- 100.0 4.7E-66 1E-70 478.6 29.7 395 22-418 14-409 (412)
8 KOG2799 Succinyl-CoA synthetas 100.0 4.1E-64 8.9E-69 481.3 18.8 408 8-421 7-422 (434)
9 PF08442 ATP-grasp_2: ATP-gras 100.0 1.2E-42 2.6E-47 321.7 18.6 201 29-238 1-202 (202)
10 PF13549 ATP-grasp_5: ATP-gras 100.0 3.8E-41 8.3E-46 316.2 17.9 205 24-253 4-222 (222)
11 COG1042 Acyl-CoA synthetase (N 99.9 2.9E-24 6.2E-29 226.7 1.4 371 11-421 10-449 (598)
12 TIGR02717 AcCoA-syn-alpha acet 99.8 8.5E-20 1.8E-24 189.3 16.9 157 257-421 264-445 (447)
13 PF00549 Ligase_CoA: CoA-ligas 99.6 3.1E-14 6.7E-19 126.2 11.3 120 297-418 1-152 (153)
14 PF01071 GARS_A: Phosphoribosy 99.3 1.1E-11 2.4E-16 113.9 12.8 101 31-153 2-104 (194)
15 COG1042 Acyl-CoA synthetase (N 99.3 3.2E-12 6.9E-17 135.7 6.1 119 26-173 467-586 (598)
16 COG0151 PurD Phosphoribosylami 99.2 4.5E-11 9.7E-16 119.9 11.7 128 2-153 76-204 (428)
17 PRK12815 carB carbamoyl phosph 99.1 6.9E-10 1.5E-14 126.6 16.3 167 27-238 124-304 (1068)
18 PRK01372 ddl D-alanine--D-alan 99.1 7.9E-09 1.7E-13 101.9 19.4 112 24-165 91-203 (304)
19 PF02786 CPSase_L_D2: Carbamoy 99.1 1.4E-09 3.1E-14 102.0 13.2 107 32-161 2-111 (211)
20 TIGR00514 accC acetyl-CoA carb 99.1 1.6E-09 3.4E-14 112.9 14.3 114 25-161 109-225 (449)
21 PRK13789 phosphoribosylamine-- 99.1 1.4E-09 3E-14 112.6 13.5 105 25-151 102-207 (426)
22 PF02222 ATP-grasp: ATP-grasp 99.0 9.1E-09 2E-13 93.4 16.2 111 39-186 1-111 (172)
23 TIGR01369 CPSaseII_lrg carbamo 99.0 3.2E-09 6.9E-14 121.1 16.1 107 28-161 124-231 (1050)
24 PRK08591 acetyl-CoA carboxylas 99.0 4E-09 8.6E-14 109.9 15.2 111 28-161 112-225 (451)
25 PLN02735 carbamoyl-phosphate s 99.0 4.6E-09 9.9E-14 119.8 16.3 167 28-238 141-322 (1102)
26 PLN02257 phosphoribosylamine-- 99.0 2.7E-09 5.9E-14 110.6 13.2 106 25-152 96-202 (434)
27 PRK08654 pyruvate carboxylase 99.0 3.9E-09 8.6E-14 111.2 14.3 173 25-238 109-293 (499)
28 COG0458 CarB Carbamoylphosphat 99.0 4.4E-09 9.6E-14 105.3 13.2 168 29-239 114-292 (400)
29 PRK05294 carB carbamoyl phosph 99.0 6.7E-09 1.5E-13 118.7 16.2 168 27-238 124-305 (1066)
30 PLN02735 carbamoyl-phosphate s 99.0 1.1E-08 2.4E-13 116.7 16.4 111 24-161 695-806 (1102)
31 TIGR01161 purK phosphoribosyla 99.0 5.2E-08 1.1E-12 98.3 19.5 108 24-161 91-199 (352)
32 PRK06019 phosphoribosylaminoim 98.9 6.4E-08 1.4E-12 98.5 19.9 108 24-161 93-201 (372)
33 PRK07178 pyruvate carboxylase 98.9 1.4E-08 3E-13 106.5 15.3 172 26-237 109-292 (472)
34 PRK13790 phosphoribosylamine-- 98.9 8E-09 1.7E-13 105.4 12.9 103 24-152 60-163 (379)
35 PRK14569 D-alanyl-alanine synt 98.9 3.1E-08 6.7E-13 97.7 16.4 95 27-153 94-189 (296)
36 PRK00885 phosphoribosylamine-- 98.9 9.8E-09 2.1E-13 106.0 13.4 104 27-152 98-202 (420)
37 PRK08462 biotin carboxylase; V 98.9 2.3E-08 4.9E-13 104.1 15.8 114 25-161 111-227 (445)
38 PRK09288 purT phosphoribosylgl 98.9 1.2E-07 2.6E-12 96.9 19.9 102 28-152 110-213 (395)
39 PLN02948 phosphoribosylaminoim 98.9 1.2E-07 2.5E-12 101.7 19.7 106 27-160 117-223 (577)
40 TIGR02712 urea_carbox urea car 98.8 6.8E-08 1.5E-12 111.0 17.5 111 28-161 111-223 (1201)
41 PRK06111 acetyl-CoA carboxylas 98.8 5.3E-08 1.1E-12 101.4 14.9 115 24-161 108-225 (450)
42 PRK05586 biotin carboxylase; V 98.8 2.1E-07 4.5E-12 97.0 19.3 115 24-161 108-225 (447)
43 TIGR00877 purD phosphoribosyla 98.8 3.2E-08 7E-13 102.2 13.0 102 28-152 101-204 (423)
44 PF07478 Dala_Dala_lig_C: D-al 98.8 1.4E-07 3.1E-12 88.0 15.0 87 38-152 1-92 (203)
45 TIGR01369 CPSaseII_lrg carbamo 98.8 8E-08 1.7E-12 109.8 16.0 105 29-161 667-772 (1050)
46 PRK08463 acetyl-CoA carboxylas 98.8 9.3E-08 2E-12 100.5 15.4 175 24-238 107-294 (478)
47 KOG0237 Glycinamide ribonucleo 98.7 5.6E-08 1.2E-12 100.3 11.0 133 2-157 81-214 (788)
48 PRK06524 biotin carboxylase-li 98.7 4.3E-07 9.3E-12 94.4 17.7 97 27-152 138-239 (493)
49 COG0026 PurK Phosphoribosylami 98.7 5.3E-07 1.2E-11 89.6 17.2 127 25-187 93-219 (375)
50 PRK14573 bifunctional D-alanyl 98.7 3.9E-07 8.4E-12 101.7 18.1 98 28-152 565-670 (809)
51 PF13535 ATP-grasp_4: ATP-gras 98.7 1.5E-07 3.2E-12 85.1 12.2 105 30-161 3-108 (184)
52 PRK10446 ribosomal protein S6 98.7 1.5E-07 3.2E-12 93.0 12.9 100 28-153 96-198 (300)
53 PRK12999 pyruvate carboxylase; 98.7 1.9E-07 4.2E-12 106.8 15.3 112 27-161 115-229 (1146)
54 TIGR01205 D_ala_D_alaTIGR D-al 98.7 9.6E-07 2.1E-11 87.4 18.4 96 28-151 102-204 (315)
55 PRK05294 carB carbamoyl phosph 98.7 2.4E-07 5.1E-12 106.2 15.9 99 29-152 667-766 (1066)
56 COG0439 AccC Biotin carboxylas 98.7 2.2E-07 4.7E-12 96.0 13.8 109 30-161 114-225 (449)
57 PRK12815 carB carbamoyl phosph 98.7 2.1E-07 4.6E-12 106.4 15.1 96 29-152 668-764 (1068)
58 TIGR01142 purT phosphoribosylg 98.7 1.8E-07 3.8E-12 95.2 13.0 101 28-151 97-199 (380)
59 PRK12833 acetyl-CoA carboxylas 98.7 1.1E-07 2.5E-12 99.5 11.5 104 28-152 115-221 (467)
60 PRK14016 cyanophycin synthetas 98.6 1.8E-07 3.9E-12 102.9 12.3 94 29-150 212-307 (727)
61 TIGR02068 cya_phycin_syn cyano 98.6 1.7E-07 3.7E-12 105.0 12.2 94 29-150 211-306 (864)
62 PRK14572 D-alanyl-alanine synt 98.6 2.6E-07 5.7E-12 93.1 11.5 97 26-150 125-228 (347)
63 PRK14571 D-alanyl-alanine synt 98.6 1.8E-06 3.9E-11 85.1 16.3 91 28-151 92-183 (299)
64 TIGR01235 pyruv_carbox pyruvat 98.6 1E-06 2.2E-11 100.7 16.3 111 27-160 111-224 (1143)
65 TIGR01435 glu_cys_lig_rel glut 98.6 4.2E-07 9.1E-12 98.9 12.4 94 30-150 474-571 (737)
66 PRK01966 ddl D-alanyl-alanine 98.6 2.9E-07 6.2E-12 92.4 10.4 95 28-150 120-219 (333)
67 PRK05784 phosphoribosylamine-- 98.6 5.3E-07 1.1E-11 94.7 12.7 106 24-151 102-218 (486)
68 PF08443 RimK: RimK-like ATP-g 98.6 8.9E-08 1.9E-12 88.3 5.7 97 31-153 3-102 (190)
69 PRK07206 hypothetical protein; 98.5 8E-07 1.7E-11 91.6 12.7 100 29-149 106-209 (416)
70 PRK14570 D-alanyl-alanine synt 98.5 7.7E-07 1.7E-11 90.3 11.9 96 28-151 126-229 (364)
71 PRK14568 vanB D-alanine--D-lac 98.5 4.9E-07 1.1E-11 91.0 10.3 94 28-151 129-223 (343)
72 PRK06395 phosphoribosylamine-- 98.5 1.2E-06 2.5E-11 91.1 12.5 121 5-152 81-204 (435)
73 PRK02471 bifunctional glutamat 98.5 1.2E-06 2.7E-11 96.3 12.4 92 30-148 487-582 (752)
74 PRK02186 argininosuccinate lya 98.4 2E-06 4.4E-11 96.9 13.1 97 28-151 104-201 (887)
75 PRK12767 carbamoyl phosphate s 98.3 3.8E-06 8.2E-11 83.5 11.9 91 29-151 109-202 (326)
76 TIGR02144 LysX_arch Lysine bio 98.3 3.8E-06 8.3E-11 81.7 11.4 100 28-150 84-185 (280)
77 COG4770 Acetyl/propionyl-CoA c 98.3 2.3E-05 5E-10 81.3 17.1 108 31-161 115-225 (645)
78 TIGR03103 trio_acet_GNAT GNAT- 98.3 4.5E-06 9.8E-11 89.1 12.2 92 30-150 296-389 (547)
79 COG0027 PurT Formate-dependent 98.3 5.4E-06 1.2E-10 80.4 10.6 89 40-150 123-211 (394)
80 PF13607 Succ_CoA_lig: Succiny 98.3 1.1E-05 2.4E-10 70.7 11.4 118 291-416 1-135 (138)
81 PRK13278 purP 5-formaminoimida 98.3 8.5E-06 1.8E-10 82.3 12.1 101 28-161 120-221 (358)
82 TIGR00768 rimK_fam alpha-L-glu 98.3 1E-05 2.2E-10 78.2 12.2 97 28-148 85-184 (277)
83 PF15632 ATPgrasp_Ter: ATP-gra 98.2 4.3E-06 9.3E-11 83.3 9.5 165 23-238 99-282 (329)
84 KOG1254 ATP-citrate lyase [Ene 98.2 3.8E-07 8.2E-12 92.4 1.1 285 70-373 80-435 (600)
85 PRK06849 hypothetical protein; 98.1 1.8E-05 3.8E-10 81.0 11.1 98 23-150 108-207 (389)
86 PLN02522 ATP citrate (pro-S)-l 98.0 5.7E-05 1.2E-09 80.7 13.5 124 290-419 166-313 (608)
87 PTZ00187 succinyl-CoA syntheta 98.0 8.1E-05 1.8E-09 73.7 13.3 125 290-420 168-313 (317)
88 COG0074 SucD Succinyl-CoA synt 97.9 0.0001 2.2E-09 70.9 11.6 129 287-421 141-290 (293)
89 KOG0238 3-Methylcrotonyl-CoA c 97.9 6E-05 1.3E-09 77.2 9.8 108 31-161 111-221 (670)
90 COG0189 RimK Glutathione synth 97.9 0.00012 2.7E-09 72.9 11.5 95 30-149 118-214 (318)
91 TIGR01019 sucCoAalpha succinyl 97.9 0.00021 4.5E-09 70.2 12.8 122 290-418 142-284 (286)
92 PRK05678 succinyl-CoA syntheta 97.8 0.00032 6.8E-09 69.0 13.3 125 290-421 144-289 (291)
93 PRK06091 membrane protein FdrA 97.8 0.00018 3.8E-09 75.8 12.1 120 290-420 192-316 (555)
94 PLN00125 Succinyl-CoA ligase [ 97.8 0.00045 9.7E-09 68.2 14.0 124 290-420 149-294 (300)
95 TIGR02717 AcCoA-syn-alpha acet 97.7 0.00037 8.1E-09 72.7 13.2 123 290-420 149-288 (447)
96 COG1038 PycA Pyruvate carboxyl 97.7 0.00095 2.1E-08 72.0 16.0 135 29-194 119-257 (1149)
97 PRK13277 5-formaminoimidazole- 97.6 0.00038 8.3E-09 69.9 10.8 99 34-161 129-228 (366)
98 KOG0370 Multifunctional pyrimi 97.5 7.8E-05 1.7E-09 81.0 4.5 136 38-210 505-651 (1435)
99 COG1181 DdlA D-alanine-D-alani 97.4 0.001 2.2E-08 66.4 10.2 97 28-152 100-201 (317)
100 COG3919 Predicted ATP-grasp en 97.0 0.0022 4.9E-08 62.1 7.2 104 34-161 117-223 (415)
101 KOG1255 Succinyl-CoA synthetas 96.9 0.0039 8.4E-08 58.7 7.9 130 287-420 172-323 (329)
102 COG1759 5-formaminoimidazole-4 96.7 0.0082 1.8E-07 58.8 9.2 96 35-161 128-224 (361)
103 KOG0369 Pyruvate carboxylase [ 96.7 0.0077 1.7E-07 64.0 9.3 107 31-160 147-256 (1176)
104 PLN02941 inositol-tetrakisphos 96.6 0.013 2.9E-07 58.6 10.1 91 30-151 106-208 (328)
105 KOG0368 Acetyl-CoA carboxylase 95.8 0.11 2.3E-06 59.9 12.6 83 51-160 224-307 (2196)
106 PRK12458 glutathione synthetas 95.4 0.094 2E-06 52.8 9.8 77 44-147 139-220 (338)
107 TIGR01380 glut_syn glutathione 94.6 0.21 4.5E-06 49.7 9.5 86 39-151 127-216 (312)
108 TIGR02291 rimK_rel_E_lig alpha 94.4 0.067 1.4E-06 53.3 5.4 72 12-85 18-89 (317)
109 PF02655 ATP-grasp_3: ATP-gras 94.3 0.034 7.3E-07 49.8 3.0 81 31-152 3-84 (161)
110 PRK05246 glutathione synthetas 94.2 0.33 7.1E-06 48.3 10.0 78 45-149 134-215 (316)
111 KOG0370 Multifunctional pyrimi 94.0 0.56 1.2E-05 52.3 11.7 115 36-180 1038-1153(1435)
112 PF02601 Exonuc_VII_L: Exonucl 93.5 1.1 2.3E-05 44.6 12.2 113 291-418 14-143 (319)
113 COG0054 RibH Riboflavin syntha 91.8 4.4 9.6E-05 35.9 12.2 106 306-421 33-148 (152)
114 PRK12419 riboflavin synthase s 90.8 7.7 0.00017 34.7 12.8 121 293-420 12-148 (158)
115 PRK06091 membrane protein FdrA 90.7 8.1 0.00018 41.4 15.1 173 234-421 280-494 (555)
116 PF02955 GSH-S_ATP: Prokaryoti 89.7 1.2 2.6E-05 40.5 7.1 66 46-138 12-79 (173)
117 TIGR00237 xseA exodeoxyribonuc 89.6 3.4 7.4E-05 43.1 11.3 113 291-416 129-253 (432)
118 COG2232 Predicted ATP-dependen 88.1 1.5 3.3E-05 43.6 6.9 94 129-238 176-275 (389)
119 PRK02261 methylaspartate mutas 88.0 14 0.0003 32.2 12.3 104 306-421 22-135 (137)
120 PRK10949 protease 4; Provision 87.1 1.6 3.5E-05 47.6 7.1 78 291-386 325-405 (618)
121 PF14397 ATPgrasp_ST: Sugar-tr 86.7 1.7 3.7E-05 42.7 6.5 56 26-85 21-87 (285)
122 PLN02404 6,7-dimethyl-8-ribity 86.4 18 0.0004 31.7 12.1 118 293-418 9-140 (141)
123 PRK00061 ribH 6,7-dimethyl-8-r 85.8 25 0.00055 31.3 13.2 120 293-420 14-147 (154)
124 PF00885 DMRL_synthase: 6,7-di 85.4 5.4 0.00012 35.1 8.4 121 293-421 5-139 (144)
125 PF14398 ATPgrasp_YheCD: YheC/ 85.0 38 0.00083 32.7 17.5 186 28-250 15-230 (262)
126 PRK00286 xseA exodeoxyribonucl 84.7 8.5 0.00018 40.1 11.0 113 291-417 135-259 (438)
127 TIGR01506 ribC_arch riboflavin 84.6 28 0.00062 30.9 13.6 109 303-420 14-127 (151)
128 cd07014 S49_SppA Signal peptid 83.9 7.5 0.00016 35.1 8.9 62 323-387 17-81 (177)
129 TIGR00640 acid_CoA_mut_C methy 83.8 11 0.00023 32.7 9.4 104 305-418 20-125 (132)
130 COG0616 SppA Periplasmic serin 83.7 4.2 9E-05 40.6 7.8 56 327-386 79-137 (317)
131 TIGR00114 lumazine-synth 6,7-d 83.6 30 0.00064 30.3 12.7 109 305-421 20-136 (138)
132 cd02072 Glm_B12_BD B12 binding 83.5 26 0.00057 30.2 11.6 98 307-416 19-126 (128)
133 PF10281 Ish1: Putative stress 81.9 3.4 7.5E-05 27.6 4.4 32 31-64 5-36 (38)
134 TIGR00705 SppA_67K signal pept 80.6 4.3 9.4E-05 44.0 7.0 78 291-386 307-387 (584)
135 PLN02775 Probable dihydrodipic 80.1 27 0.00059 34.3 11.7 121 293-421 13-148 (286)
136 cd02067 B12-binding B12 bindin 79.8 29 0.00062 28.8 10.5 101 305-416 17-117 (119)
137 PRK04147 N-acetylneuraminate l 77.6 38 0.00083 33.2 12.2 101 319-420 12-126 (293)
138 cd02071 MM_CoA_mut_B12_BD meth 77.4 25 0.00054 29.7 9.5 88 305-402 17-104 (122)
139 cd00408 DHDPS-like Dihydrodipi 76.2 49 0.0011 32.0 12.4 100 320-421 7-120 (281)
140 cd07019 S49_SppA_1 Signal pept 74.9 12 0.00026 34.8 7.5 58 327-387 20-80 (211)
141 cd07018 S49_SppA_67K_type Sign 74.4 13 0.00029 34.8 7.7 55 327-384 28-85 (222)
142 PRK14188 bifunctional 5,10-met 73.7 34 0.00074 33.8 10.6 116 291-407 32-189 (296)
143 COG0329 DapA Dihydrodipicolina 73.1 57 0.0012 32.2 12.1 100 321-421 15-127 (299)
144 TIGR00706 SppA_dom signal pept 72.7 19 0.00041 33.4 8.2 59 328-387 13-71 (207)
145 cd06270 PBP1_GalS_like Ligand 72.4 30 0.00065 32.4 9.7 81 292-379 117-204 (268)
146 COG0075 Serine-pyruvate aminot 71.8 24 0.00052 36.2 9.2 82 286-374 75-160 (383)
147 COG0351 ThiD Hydroxymethylpyri 71.3 50 0.0011 32.1 10.8 93 299-397 14-126 (263)
148 cd07022 S49_Sppa_36K_type Sign 71.0 23 0.00049 33.1 8.4 61 325-386 22-82 (214)
149 TIGR02130 dapB_plant dihydrodi 70.0 38 0.00082 33.2 9.8 121 293-421 2-137 (275)
150 TIGR00674 dapA dihydrodipicoli 69.9 80 0.0017 30.7 12.3 100 320-421 8-121 (285)
151 PRK03170 dihydrodipicolinate s 69.5 81 0.0018 30.7 12.3 100 319-420 10-123 (292)
152 PF11379 DUF3182: Protein of u 68.6 19 0.00042 36.1 7.4 83 46-149 114-196 (355)
153 cd07023 S49_Sppa_N_C Signal pe 68.5 23 0.0005 32.7 7.8 57 327-386 16-75 (208)
154 TIGR00730 conserved hypothetic 68.5 94 0.002 28.3 11.9 119 293-417 32-176 (178)
155 COG1570 XseA Exonuclease VII, 68.1 64 0.0014 33.7 11.4 89 291-387 135-235 (440)
156 PLN02417 dihydrodipicolinate s 67.4 75 0.0016 30.9 11.5 101 319-420 10-123 (280)
157 PF14403 CP_ATPgrasp_2: Circul 66.3 18 0.00039 37.9 7.1 84 29-145 297-391 (445)
158 PRK14194 bifunctional 5,10-met 65.4 47 0.001 33.0 9.5 116 291-407 33-190 (301)
159 TIGR02313 HpaI-NOT-DapA 2,4-di 65.3 1E+02 0.0022 30.3 12.0 101 319-420 9-122 (294)
160 COG2185 Sbm Methylmalonyl-CoA 65.1 98 0.0021 27.3 11.8 102 307-420 32-137 (143)
161 TIGR00683 nanA N-acetylneurami 64.7 1.2E+02 0.0027 29.6 12.5 100 320-420 10-123 (290)
162 cd00578 L-fuc_L-ara-isomerases 63.6 1.5E+02 0.0033 30.8 13.6 67 329-403 48-129 (452)
163 cd00394 Clp_protease_like Case 62.5 37 0.00079 29.8 7.6 55 328-387 11-67 (161)
164 cd00952 CHBPH_aldolase Trans-o 61.7 1.1E+02 0.0024 30.2 11.6 94 325-420 23-130 (309)
165 PRK03620 5-dehydro-4-deoxygluc 61.6 1.4E+02 0.0031 29.3 12.3 100 319-421 16-129 (303)
166 TIGR00725 conserved hypothetic 61.6 1.2E+02 0.0026 27.0 10.8 109 293-416 31-158 (159)
167 COG0673 MviM Predicted dehydro 61.0 41 0.00089 33.1 8.4 98 293-402 5-120 (342)
168 PRK00048 dihydrodipicolinate r 59.7 61 0.0013 31.1 9.1 118 293-421 3-129 (257)
169 TIGR03249 KdgD 5-dehydro-4-deo 57.9 1.6E+02 0.0035 28.8 11.9 98 320-420 15-126 (296)
170 cd00951 KDGDH 5-dehydro-4-deox 57.8 1.9E+02 0.0041 28.2 12.5 98 320-420 10-121 (289)
171 cd00950 DHDPS Dihydrodipicolin 57.5 1.8E+02 0.0038 28.1 12.1 80 320-400 10-95 (284)
172 PF00763 THF_DHG_CYH: Tetrahyd 55.6 48 0.001 27.9 6.7 65 291-356 29-98 (117)
173 PF02750 Synapsin_C: Synapsin, 54.9 30 0.00065 32.1 5.6 75 42-145 29-103 (203)
174 cd07021 Clp_protease_NfeD_like 53.1 60 0.0013 29.5 7.4 50 332-387 17-68 (178)
175 PF00701 DHDPS: Dihydrodipicol 52.2 2.3E+02 0.005 27.4 12.1 99 321-420 12-123 (289)
176 TIGR01101 V_ATP_synt_F vacuola 51.8 98 0.0021 26.2 7.9 60 319-386 34-93 (115)
177 PRK06455 riboflavin synthase; 50.6 1.7E+02 0.0037 26.2 9.5 77 303-383 16-97 (155)
178 cd07020 Clp_protease_NfeD_1 No 50.6 65 0.0014 29.3 7.3 50 330-385 15-66 (187)
179 cd00954 NAL N-Acetylneuraminic 49.9 2.5E+02 0.0055 27.3 12.3 101 320-420 10-123 (288)
180 cd01574 PBP1_LacI Ligand-bindi 49.3 1.4E+02 0.0031 27.5 9.7 75 292-375 117-197 (264)
181 PF05770 Ins134_P3_kin: Inosit 48.8 17 0.00036 36.3 3.2 69 42-141 111-183 (307)
182 TIGR01501 MthylAspMutase methy 48.7 1.8E+02 0.0039 25.2 11.2 100 308-418 22-130 (134)
183 PRK02228 V-type ATP synthase s 48.0 1.2E+02 0.0027 24.7 7.8 52 330-387 29-80 (100)
184 PF08353 DUF1727: Domain of un 47.4 69 0.0015 27.0 6.3 78 332-417 7-95 (113)
185 cd06303 PBP1_LuxPQ_Quorum_Sens 47.0 2.1E+02 0.0045 27.0 10.6 85 326-419 170-256 (280)
186 PF00532 Peripla_BP_1: Peripla 44.4 77 0.0017 30.6 7.1 65 308-379 142-208 (279)
187 COG1879 RbsB ABC-type sugar tr 44.3 1.5E+02 0.0032 28.9 9.3 87 324-419 197-285 (322)
188 TIGR00705 SppA_67K signal pept 43.8 60 0.0013 35.3 6.8 53 328-383 76-132 (584)
189 cd06275 PBP1_PurR Ligand-bindi 43.7 1.5E+02 0.0033 27.4 9.0 78 292-376 118-202 (269)
190 PRK14191 bifunctional 5,10-met 43.2 62 0.0013 31.9 6.2 64 291-355 31-99 (285)
191 TIGR02990 ectoine_eutA ectoine 43.2 1.8E+02 0.0039 27.8 9.3 98 293-402 122-227 (239)
192 cd06311 PBP1_ABC_sugar_binding 42.8 1.7E+02 0.0037 27.3 9.2 77 327-412 166-246 (274)
193 cd06293 PBP1_LacI_like_11 Liga 42.6 2.7E+02 0.0059 25.8 10.6 78 292-376 117-201 (269)
194 cd06319 PBP1_ABC_sugar_binding 42.0 2.9E+02 0.0062 25.6 11.9 76 292-375 126-208 (277)
195 PF03641 Lysine_decarbox: Poss 41.4 74 0.0016 27.3 5.8 68 346-416 54-133 (133)
196 cd06302 PBP1_LsrB_Quorum_Sensi 40.9 2.4E+02 0.0052 27.0 10.1 102 309-419 147-251 (298)
197 PRK10949 protease 4; Provision 40.4 65 0.0014 35.3 6.4 50 331-383 98-151 (618)
198 cd06298 PBP1_CcpA_like Ligand- 40.0 2.3E+02 0.0049 26.1 9.6 79 292-377 117-202 (268)
199 COG1619 LdcA Uncharacterized p 39.9 2.8E+02 0.006 27.7 10.3 110 291-409 10-131 (313)
200 cd06288 PBP1_sucrose_transcrip 39.8 3E+02 0.0066 25.3 11.4 78 292-376 117-201 (269)
201 PRK14175 bifunctional 5,10-met 39.5 78 0.0017 31.2 6.3 63 291-354 32-99 (286)
202 PRK10792 bifunctional 5,10-met 39.1 83 0.0018 31.0 6.4 63 292-355 34-101 (285)
203 PF13407 Peripla_BP_4: Peripla 38.7 2.7E+02 0.0058 25.7 9.8 81 327-417 164-246 (257)
204 PF01990 ATP-synt_F: ATP synth 38.5 85 0.0018 25.2 5.4 50 329-386 26-77 (95)
205 PRK15395 methyl-galactoside AB 38.4 3.1E+02 0.0066 26.9 10.6 64 309-379 186-253 (330)
206 cd06291 PBP1_Qymf_like Ligand 38.4 2.4E+02 0.0052 26.1 9.4 78 292-377 113-198 (265)
207 PRK14176 bifunctional 5,10-met 38.2 79 0.0017 31.2 6.1 63 291-354 38-105 (287)
208 PRK14184 bifunctional 5,10-met 38.0 84 0.0018 31.0 6.2 64 291-355 31-99 (286)
209 cd04743 NPD_PKS 2-Nitropropane 37.9 1E+02 0.0022 31.0 6.8 46 367-416 74-120 (320)
210 COG3148 Uncharacterized conser 37.8 1.9E+02 0.0041 27.2 8.0 62 336-407 93-159 (231)
211 PRK14190 bifunctional 5,10-met 37.8 86 0.0019 30.9 6.2 63 291-354 32-99 (284)
212 cd06294 PBP1_ycjW_transcriptio 37.6 3E+02 0.0066 25.3 10.0 78 292-376 123-207 (270)
213 PRK14189 bifunctional 5,10-met 37.4 89 0.0019 30.8 6.3 64 291-355 32-100 (285)
214 KOG1254 ATP-citrate lyase [Ene 37.0 75 0.0016 33.6 5.8 93 291-387 159-252 (600)
215 PRK14166 bifunctional 5,10-met 37.0 93 0.002 30.6 6.3 64 291-355 30-98 (282)
216 PRK11778 putative inner membra 36.6 82 0.0018 31.7 6.0 37 347-386 124-163 (330)
217 PRK14187 bifunctional 5,10-met 36.6 92 0.002 30.8 6.3 64 291-355 32-100 (294)
218 PF14305 ATPgrasp_TupA: TupA-l 36.3 2.5E+02 0.0054 26.7 9.1 95 28-138 17-119 (239)
219 PRK14179 bifunctional 5,10-met 36.3 90 0.002 30.7 6.1 63 291-354 32-99 (284)
220 PRK14185 bifunctional 5,10-met 36.3 93 0.002 30.8 6.2 63 291-354 31-98 (293)
221 PRK14170 bifunctional 5,10-met 36.2 93 0.002 30.6 6.2 63 291-354 31-98 (284)
222 cd06306 PBP1_TorT-like TorT-li 36.2 3.5E+02 0.0076 25.2 10.3 75 328-411 166-241 (268)
223 PLN02898 HMP-P kinase/thiamin- 36.1 1.8E+02 0.0038 30.9 8.8 85 292-381 10-109 (502)
224 PRK14171 bifunctional 5,10-met 35.6 94 0.002 30.7 6.1 63 292-355 33-100 (288)
225 cd01539 PBP1_GGBP Periplasmic 35.3 4E+02 0.0086 25.6 10.7 47 326-379 180-228 (303)
226 PRK14174 bifunctional 5,10-met 35.2 97 0.0021 30.7 6.2 63 291-354 31-98 (295)
227 PRK14168 bifunctional 5,10-met 35.1 98 0.0021 30.7 6.2 64 291-355 33-101 (297)
228 COG1611 Predicted Rossmann fol 35.1 3.3E+02 0.0072 25.3 9.5 121 295-419 48-195 (205)
229 PRK14180 bifunctional 5,10-met 35.0 1E+02 0.0022 30.4 6.2 63 291-354 31-98 (282)
230 cd03412 CbiK_N Anaerobic cobal 34.7 2.6E+02 0.0057 23.7 8.1 37 348-384 2-39 (127)
231 PRK14169 bifunctional 5,10-met 34.7 1.1E+02 0.0024 30.1 6.4 63 291-354 30-97 (282)
232 PRK14167 bifunctional 5,10-met 34.4 99 0.0021 30.7 6.1 63 291-354 31-98 (297)
233 PLN02516 methylenetetrahydrofo 33.9 1.1E+02 0.0023 30.4 6.3 63 292-355 40-107 (299)
234 PRK14193 bifunctional 5,10-met 33.8 1.1E+02 0.0023 30.2 6.2 64 291-355 32-100 (284)
235 cd06281 PBP1_LacI_like_5 Ligan 33.7 1.5E+02 0.0033 27.6 7.3 77 292-376 117-200 (269)
236 PLN02897 tetrahydrofolate dehy 33.7 1.1E+02 0.0023 31.1 6.2 63 292-355 87-154 (345)
237 PRK14183 bifunctional 5,10-met 33.7 1.1E+02 0.0023 30.2 6.1 64 291-355 31-99 (281)
238 PRK14178 bifunctional 5,10-met 33.6 1.1E+02 0.0023 30.1 6.2 64 290-354 25-93 (279)
239 PRK14192 bifunctional 5,10-met 33.3 2.6E+02 0.0057 27.4 8.9 64 291-355 33-101 (283)
240 PRK14182 bifunctional 5,10-met 33.2 1.1E+02 0.0025 30.0 6.2 63 291-354 30-97 (282)
241 PRK14181 bifunctional 5,10-met 33.0 1.1E+02 0.0023 30.3 6.0 63 291-354 26-93 (287)
242 cd07015 Clp_protease_NfeD Nodu 32.9 1.8E+02 0.004 26.3 7.2 47 332-384 17-65 (172)
243 COG4822 CbiK Cobalamin biosynt 32.9 1.3E+02 0.0029 28.5 6.2 74 329-407 150-236 (265)
244 PRK14177 bifunctional 5,10-met 32.9 1.1E+02 0.0024 30.1 6.1 63 292-355 34-101 (284)
245 KOG1251 Serine racemase [Signa 32.4 3.2E+02 0.0069 26.6 8.8 85 307-402 136-224 (323)
246 PRK14172 bifunctional 5,10-met 32.1 1.1E+02 0.0025 29.9 6.0 63 292-355 33-100 (278)
247 TIGR00789 flhB_rel flhB C-term 31.8 71 0.0015 25.3 3.8 33 377-411 16-49 (82)
248 cd06289 PBP1_MalI_like Ligand- 31.7 1.8E+02 0.0038 26.9 7.3 41 329-376 161-202 (268)
249 PRK11041 DNA-binding transcrip 31.6 2.9E+02 0.0063 26.3 9.0 78 292-376 153-237 (309)
250 cd07025 Peptidase_S66 LD-Carbo 31.5 85 0.0018 30.7 5.1 62 294-355 1-72 (282)
251 cd00114 LIGANc NAD+ dependent 31.5 1.3E+02 0.0028 30.0 6.4 36 30-65 227-263 (307)
252 TIGR00877 purD phosphoribosyla 31.5 2.8E+02 0.006 28.4 9.3 114 293-416 2-135 (423)
253 PRK03957 V-type ATP synthase s 31.4 2.9E+02 0.0063 22.5 7.8 46 330-386 29-74 (100)
254 cd06273 PBP1_GntR_like_1 This 31.2 1.7E+02 0.0036 27.1 7.1 65 308-379 140-205 (268)
255 PF03709 OKR_DC_1_N: Orn/Lys/A 31.1 1.1E+02 0.0024 25.5 5.1 51 333-386 26-76 (115)
256 cd06324 PBP1_ABC_sugar_binding 31.0 3.3E+02 0.0072 26.1 9.3 84 326-420 182-274 (305)
257 cd02940 DHPD_FMN Dihydropyrimi 30.7 3.8E+02 0.0083 26.2 9.7 72 329-402 111-195 (299)
258 cd07013 S14_ClpP Caseinolytic 30.6 1.4E+02 0.0031 26.5 6.0 53 329-386 13-67 (162)
259 cd06322 PBP1_ABC_sugar_binding 30.5 4.3E+02 0.0094 24.3 13.3 98 292-401 122-226 (267)
260 COG0190 FolD 5,10-methylene-te 30.5 1.4E+02 0.0031 29.4 6.3 64 291-355 30-98 (283)
261 COG0151 PurD Phosphoribosylami 30.2 3.8E+02 0.0081 28.0 9.6 74 335-417 53-135 (428)
262 TIGR00036 dapB dihydrodipicoli 30.1 3.9E+02 0.0084 25.8 9.4 119 293-421 3-139 (266)
263 cd06297 PBP1_LacI_like_12 Liga 29.9 2.7E+02 0.0059 26.0 8.3 72 309-387 143-218 (269)
264 TIGR00514 accC acetyl-CoA carb 29.8 5.2E+02 0.011 26.8 11.0 114 293-416 4-148 (449)
265 PRK09330 cell division protein 29.2 2.8E+02 0.0061 28.6 8.6 23 293-316 15-37 (384)
266 PRK14173 bifunctional 5,10-met 29.2 1.5E+02 0.0032 29.3 6.3 64 291-355 29-97 (287)
267 TIGR00097 HMP-P_kinase phospho 28.9 3.3E+02 0.0071 25.7 8.7 77 299-382 9-99 (254)
268 cd07062 Peptidase_S66_mccF_lik 28.6 1.4E+02 0.003 29.5 6.2 61 293-354 2-75 (308)
269 cd06283 PBP1_RegR_EndR_KdgR_li 28.6 4E+02 0.0086 24.4 9.2 60 308-375 140-201 (267)
270 PRK13054 lipid kinase; Reviewe 28.4 4.1E+02 0.0088 25.9 9.4 109 292-417 4-116 (300)
271 PRK07475 hypothetical protein; 28.2 4E+02 0.0087 25.3 9.1 25 292-318 123-147 (245)
272 PRK15408 autoinducer 2-binding 28.1 4.3E+02 0.0092 26.3 9.7 80 326-414 189-269 (336)
273 PF03599 CdhD: CO dehydrogenas 28.0 4.2E+02 0.0091 27.3 9.5 13 251-263 11-24 (386)
274 PF01408 GFO_IDH_MocA: Oxidore 28.0 1.9E+02 0.0041 23.4 6.1 58 337-402 54-115 (120)
275 PRK10206 putative oxidoreducta 27.9 2.4E+02 0.0052 28.2 7.8 63 335-405 54-120 (344)
276 PRK00994 F420-dependent methyl 27.9 4.7E+02 0.01 25.2 9.0 72 326-403 41-112 (277)
277 PRK00110 hypothetical protein; 27.6 2.2E+02 0.0049 27.3 7.1 60 292-353 167-235 (245)
278 TIGR02637 RhaS rhamnose ABC tr 27.2 5.5E+02 0.012 24.4 13.3 85 326-419 165-255 (302)
279 PRK00109 Holliday junction res 26.9 2.3E+02 0.005 24.5 6.5 84 318-402 27-114 (138)
280 cd01171 YXKO-related B.subtili 26.9 86 0.0019 29.7 4.2 27 290-316 7-36 (254)
281 PRK11253 ldcA L,D-carboxypepti 26.6 2.1E+02 0.0047 28.3 7.1 62 292-354 2-75 (305)
282 cd00953 KDG_aldolase KDG (2-ke 26.6 4.1E+02 0.009 25.7 9.0 76 321-400 11-91 (279)
283 PRK11241 gabD succinate-semial 26.5 5.7E+02 0.012 27.0 10.7 71 304-387 189-259 (482)
284 PRK09526 lacI lac repressor; R 26.4 5.2E+02 0.011 25.0 9.9 77 292-377 182-265 (342)
285 COG5012 Predicted cobalamin bi 26.4 5.7E+02 0.012 24.3 10.2 103 306-420 123-225 (227)
286 cd06305 PBP1_methylthioribose_ 25.7 5.3E+02 0.011 23.7 10.0 36 333-375 169-206 (273)
287 PRK10727 DNA-binding transcrip 25.5 2E+02 0.0044 28.1 6.8 81 292-379 177-264 (343)
288 TIGR02049 gshA_ferroox glutama 25.4 1.5E+02 0.0033 30.3 5.7 103 25-144 189-317 (403)
289 COG3473 Maleate cis-trans isom 25.3 3.5E+02 0.0077 25.6 7.6 67 322-401 158-224 (238)
290 PRK06079 enoyl-(acyl carrier p 25.3 1.9E+02 0.0041 27.1 6.3 61 290-353 5-91 (252)
291 cd02070 corrinoid_protein_B12- 25.3 5.3E+02 0.011 23.6 10.3 112 291-415 82-198 (201)
292 PF07805 HipA_N: HipA-like N-t 25.3 56 0.0012 25.3 2.2 30 25-54 39-68 (81)
293 cd06300 PBP1_ABC_sugar_binding 25.2 5.5E+02 0.012 23.7 10.0 54 325-386 164-218 (272)
294 cd02810 DHOD_DHPD_FMN Dihydroo 24.9 6.2E+02 0.013 24.3 10.0 72 329-402 109-191 (289)
295 COG0436 Aspartate/tyrosine/aro 24.8 3.3E+02 0.0071 27.9 8.3 77 293-374 90-195 (393)
296 TIGR00250 RNAse_H_YqgF RNAse H 24.2 4.5E+02 0.0098 22.4 8.0 84 318-402 21-108 (130)
297 COG2308 Uncharacterized conser 24.2 1.5E+02 0.0032 31.1 5.4 58 42-114 342-402 (488)
298 PRK09417 mogA molybdenum cofac 24.0 5.7E+02 0.012 23.5 9.1 48 303-352 24-73 (193)
299 cd08184 Fe-ADH3 Iron-containin 23.9 7.5E+02 0.016 24.9 10.7 75 292-369 26-102 (347)
300 PLN02616 tetrahydrofolate dehy 23.7 2E+02 0.0044 29.4 6.2 46 309-355 126-171 (364)
301 PRK05849 hypothetical protein; 23.7 9.5E+02 0.021 27.3 12.1 109 32-153 11-133 (783)
302 cd06286 PBP1_CcpB_like Ligand- 23.6 3.4E+02 0.0073 24.9 7.6 42 328-376 157-199 (260)
303 PF00730 HhH-GPD: HhH-GPD supe 23.6 28 0.00061 28.3 0.1 32 34-65 17-48 (108)
304 PRK12378 hypothetical protein; 23.5 2.6E+02 0.0056 26.8 6.7 60 291-352 165-233 (235)
305 cd01545 PBP1_SalR Ligand-bindi 23.2 4.8E+02 0.01 24.0 8.6 78 292-376 119-203 (270)
306 TIGR00519 asnASE_I L-asparagin 23.1 4E+02 0.0087 26.7 8.4 79 337-420 228-313 (336)
307 PRK03659 glutathione-regulated 23.0 7.5E+02 0.016 26.9 11.0 100 291-403 400-514 (601)
308 PF00710 Asparaginase: Asparag 23.0 2.3E+02 0.005 28.1 6.6 81 335-420 216-302 (313)
309 TIGR01037 pyrD_sub1_fam dihydr 22.9 6.8E+02 0.015 24.2 9.9 74 328-402 100-184 (300)
310 cd06296 PBP1_CatR_like Ligand- 22.9 2.5E+02 0.0054 26.0 6.6 60 309-375 141-201 (270)
311 cd07016 S14_ClpP_1 Caseinolyti 22.9 4E+02 0.0087 23.1 7.5 54 328-387 15-68 (160)
312 cd06287 PBP1_LacI_like_8 Ligan 22.9 3.6E+02 0.0078 25.4 7.8 79 293-379 120-205 (269)
313 PF01702 TGT: Queuine tRNA-rib 22.9 5.3E+02 0.011 24.2 8.8 76 328-409 65-141 (238)
314 TIGR01319 glmL_fam conserved h 22.8 4.7E+02 0.01 27.7 8.9 103 292-403 62-177 (463)
315 PRK13789 phosphoribosylamine-- 22.6 5E+02 0.011 26.9 9.2 113 293-416 6-139 (426)
316 cd06267 PBP1_LacI_sugar_bindin 22.4 5.8E+02 0.012 23.0 10.0 77 292-375 117-200 (264)
317 cd01538 PBP1_ABC_xylose_bindin 22.3 6.6E+02 0.014 23.6 11.9 77 292-375 126-213 (288)
318 cd08185 Fe-ADH1 Iron-containin 22.3 6.1E+02 0.013 25.7 9.7 59 292-351 26-89 (380)
319 PF13344 Hydrolase_6: Haloacid 22.1 4E+02 0.0087 21.4 6.8 36 366-403 21-58 (101)
320 cd06295 PBP1_CelR Ligand bindi 22.0 2.9E+02 0.0063 25.7 6.9 60 309-375 149-209 (275)
321 PRK14186 bifunctional 5,10-met 22.0 2E+02 0.0044 28.5 5.8 63 291-354 32-99 (297)
322 cd06299 PBP1_LacI_like_13 Liga 21.9 6.2E+02 0.013 23.1 9.1 76 292-375 117-198 (265)
323 cd04740 DHOD_1B_like Dihydroor 21.8 7.1E+02 0.015 24.0 9.7 72 329-402 100-181 (296)
324 PRK10401 DNA-binding transcrip 21.5 3.3E+02 0.0072 26.6 7.5 81 292-379 177-264 (346)
325 PRK09426 methylmalonyl-CoA mut 21.4 8.5E+02 0.018 27.3 11.1 115 292-417 583-704 (714)
326 cd06320 PBP1_allose_binding Pe 21.4 6.5E+02 0.014 23.2 9.8 36 333-375 170-205 (275)
327 PRK11579 putative oxidoreducta 21.2 2.9E+02 0.0063 27.5 7.0 61 335-403 54-118 (346)
328 PRK00994 F420-dependent methyl 21.1 5.8E+02 0.012 24.7 8.2 72 336-408 22-95 (277)
329 PRK07259 dihydroorotate dehydr 21.0 7.7E+02 0.017 23.9 9.9 73 329-402 102-184 (301)
330 PF04174 CP_ATPgrasp_1: A circ 20.9 1.5E+02 0.0032 29.9 4.6 67 32-114 253-323 (330)
331 PRK05784 phosphoribosylamine-- 20.9 8.5E+02 0.018 25.8 10.6 112 294-416 3-141 (486)
332 PLN02495 oxidoreductase, actin 20.6 7.6E+02 0.017 25.4 9.9 73 326-400 122-207 (385)
333 PF06180 CbiK: Cobalt chelatas 20.6 4.8E+02 0.01 25.3 8.0 66 347-418 1-69 (262)
334 COG2012 RPB5 DNA-directed RNA 20.5 74 0.0016 25.0 1.9 30 26-55 17-48 (80)
335 PRK05198 2-dehydro-3-deoxyphos 20.2 3.8E+02 0.0082 26.1 7.1 15 100-114 136-150 (264)
336 cd06282 PBP1_GntR_like_2 Ligan 20.2 3.7E+02 0.008 24.6 7.1 61 308-377 140-201 (266)
337 cd01575 PBP1_GntR Ligand-bindi 20.2 4.8E+02 0.01 23.9 7.9 60 309-375 140-200 (268)
338 KOG2741 Dimeric dihydrodiol de 20.2 3.1E+02 0.0066 27.9 6.6 57 334-398 61-118 (351)
339 PRK13143 hisH imidazole glycer 20.1 3.3E+02 0.0072 24.8 6.6 25 293-317 2-26 (200)
340 PF02844 GARS_N: Phosphoribosy 20.1 3.7E+02 0.0081 22.1 6.1 73 337-414 16-98 (100)
No 1
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=6e-84 Score=655.44 Aligned_cols=418 Identities=87% Similarity=1.276 Sum_probs=396.2
Q ss_pred CchhhhhhhhhccccccchhHHhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCC--CCeEEEEEee
Q 014588 1 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPD--HKELVVKSQI 78 (422)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g--~~PvVlK~~~ 78 (422)
|.+|..+++.+....+.+.++.+|.++|.|+||++|+||++||||+|++.+++|++|+.++++++ + .+|+|+|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l--~~~~~pvVvKaqv 78 (422)
T PLN00124 1 MLRGLLNKLASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKM--FPDEGEVVVKSQI 78 (422)
T ss_pred CchhHHHHHHHhhhhhhchhhhhcccccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh--cccCCcEEEEEEe
Confidence 67889999999888888888888899999999999999999999999999999999999999998 5 4799999999
Q ss_pred ccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCce
Q 014588 79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI 157 (422)
Q Consensus 79 ~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpv 157 (422)
+.|||||+||||+++|||+++ + +++++++++|+++.+.++|+++.|..+++|+|+|+..++.|+|+|+++||..+||+
T Consensus 79 ~~GGRGka~hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpv 157 (422)
T PLN00124 79 LAGGRGLGTFKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPL 157 (422)
T ss_pred ccCCccccccccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcE
Confidence 999999999999889999999 7 99999999999987666777677888999998888888999999999999545999
Q ss_pred eeeccCCCceeeeccccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeE
Q 014588 158 IIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLA 237 (422)
Q Consensus 158 i~~g~~GGi~iE~~~d~~~d~~~~~~i~p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~ 237 (422)
++++..||++||.+.+++||.+++++++|..+++++++++|+++|++++.+.+++++++.+||++|.++++.++|||||+
T Consensus 158 il~s~~GGv~IEeva~~~pd~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~ 237 (422)
T PLN00124 158 IIACSKGGTSIEDLAEKFPEKIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLA 237 (422)
T ss_pred EEEECCCCccHHHhhhhCchheeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceE
Confidence 97666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcEEEEeeEEeeCCCccccchhhcccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCC
Q 014588 238 ETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGT 317 (422)
Q Consensus 238 v~~~g~~~alDa~i~ld~~a~~r~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~ 317 (422)
++++|+++|+|||+.+||+|.|||++++.+++..++++.|..|...+++|++++|+||+|+||+|++|.|+|++..+|++
T Consensus 238 vt~~G~~valDAKi~~DdnA~~R~~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg~ 317 (422)
T PLN00124 238 ETADGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGS 317 (422)
T ss_pred EccCCCEEEEEEEECcCCchhhcChhhhhccCcccCChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHH
Q 014588 318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILK 397 (422)
Q Consensus 318 ~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~ 397 (422)
|+||+|++|+++.++++++++++++||++++||||++||+++||.+|++|++++++.+.++|||+++.|++.++++++|+
T Consensus 318 pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~ 397 (422)
T PLN00124 318 PANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILK 397 (422)
T ss_pred cceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998777899999999999999999999
Q ss_pred HcCCCcccccCHHHHHHHHHHHhh
Q 014588 398 ESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 398 ~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
+.|+++++|+++++|++.+++++.
T Consensus 398 ~~~~~~~~~~~l~~A~~~~v~~~~ 421 (422)
T PLN00124 398 ESGMTLITAEDLDDAAEKAVKALA 421 (422)
T ss_pred hCCCCeEEcCCHHHHHHHHHHHhc
Confidence 999998999999999999998874
No 2
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.2e-80 Score=602.08 Aligned_cols=382 Identities=51% Similarity=0.812 Sum_probs=367.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
|.|+||++|++|++||||+|++.+++|++|+..+++++ |..|+|+|+|++.||||| +|||+++ |++++++
T Consensus 1 M~lhEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~l--g~~~~VvKaQV~aGGRGK-------aGGVk~~~s~~ea~~ 71 (387)
T COG0045 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKEL--GGGPVVVKAQVHAGGRGK-------AGGVKLAKSPEEAKE 71 (387)
T ss_pred CcHHHHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHh--CCCcEEEEeeeeecCccc-------cCceEEeCCHHHHHH
Confidence 78999999999999999999999999999999999999 646999999999999999 5999999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecC-CCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS-LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~-~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~ 185 (422)
+.++|+++. +|.++.|..++.++||++.+ ..+|||+++..|+..+.|++|+|.+||++||.+.+++|+.+++.+++
T Consensus 72 ~a~~~lg~~---~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~id 148 (387)
T COG0045 72 AAEEILGKN---YQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVD 148 (387)
T ss_pred HHHHHhCcc---cccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeC
Confidence 999999975 56778899999999999998 45599999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCC-cEEEEeeEEeeCCCccccchhh
Q 014588 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGK-QLVAADAKLNFDDNAAFRQKEI 264 (422)
Q Consensus 186 p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g-~~~alDa~i~ld~~a~~r~~~~ 264 (422)
|..+++++++|+++..+|+++...+++.+++.+||++|.+.|+.++|||||+++++| +++|+||++.+|+||.|||+.+
T Consensus 149 p~~g~~~~~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~~ 228 (387)
T COG0045 149 PLTGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPDL 228 (387)
T ss_pred CccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcch
Confidence 999999999999999999999999999999999999999999999999999999954 8999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCC
Q 014588 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDE 344 (422)
Q Consensus 265 ~~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~ 344 (422)
..+++..++++.|..|.+.+++|+.++|+|+||.||+|++|.|+|.+..+|++|+||+|++|+++.+.+.++++++++||
T Consensus 229 ~~~~d~~~ed~~e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e~v~~a~~~il~d~ 308 (387)
T COG0045 229 AELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAERVKEAFKLILSDP 308 (387)
T ss_pred hhhhcccccChhHHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 345 KVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 345 ~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
++++||||+||+++.||.+|++|+++.++.+..+|+|+|+.|++.++++++|.++|+++++|+++++|++..+++++
T Consensus 309 ~vk~IfVNIfGGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN~e~Gk~iL~esg~~i~~~~~l~~aa~k~v~~~~ 385 (387)
T COG0045 309 NVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLEGTNVEEGKRILAESGLNIIAADDLDEAAEKAVELAK 385 (387)
T ss_pred CccEEEEEEccCcCccHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHcCCceEecccHHHHHHHHHHHhh
Confidence 99999999999999999999999999999777899999999999999999999999877799999999999999886
No 3
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=2.2e-76 Score=599.41 Aligned_cols=384 Identities=48% Similarity=0.796 Sum_probs=362.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCC-eEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~-PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
|.|+||++|++|++||||+|++++++|++|+.++++++ | + |+|+|+|++.+|||| +|||+++ |+++++
T Consensus 1 m~l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~l--g-~p~~VvK~qv~~g~Rgk-------~GGV~l~~~~~e~~ 70 (392)
T PRK14046 1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRAREL--G-GWHWVVKAQIHSGARGK-------AGGIKLCRTYNEVR 70 (392)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHc--C-CCcEEEEeeeccCCCCc-------CCeEEEECCHHHHH
Confidence 78999999999999999999999999999999999999 8 6 569999988888888 5999999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec-cCCCceeeeccccCCCeEEEEec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC-SKGGTSIEDLAEKYPNMIVKVPI 184 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g-~~GGi~iE~~~d~~~d~~~~~~i 184 (422)
+++++|+++.+.++++++.|..+.+|+||+|++++.|+|+|+++||.| ||++++| ..||+++|.+..++||.++++++
T Consensus 71 ~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~-g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i 149 (392)
T PRK14046 71 DAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKS-ERVRVIASARGGMEIEEIAAKEPEAIIQVVV 149 (392)
T ss_pred HHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCC-CcEEEEEeCCCCCchHHHhhhChhheEEEEc
Confidence 999999998755677777888899999999999999999999999999 8888875 58999999999889999999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCccccchhh
Q 014588 185 DVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI 264 (422)
Q Consensus 185 ~p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r~~~~ 264 (422)
+|..+++++++++++..+|+++...+++.+++.+||++|.+++++++|||||+++.+|+++|+|+|+.+||||.|||+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~~ 229 (392)
T PRK14046 150 EPAVGLQQFQAREIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNI 229 (392)
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCC
Q 014588 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDE 344 (422)
Q Consensus 265 ~~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~ 344 (422)
+.+++..+.++.|..|.+.+++|++++|+||||+||+|++|+++|++..+|++++||+|++|.++++.|.++++++++||
T Consensus 230 ~~~~~~~~~~~~e~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a~~e~~~~aL~~ll~Dp 309 (392)
T PRK14046 230 AEMRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGASPERVAKAFRLVLSDR 309 (392)
T ss_pred HhhcCcccCChhHHHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCCCHHHHHHHHHHHHcCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhhC
Q 014588 345 KVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIAS 422 (422)
Q Consensus 345 ~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~~ 422 (422)
++|+|+++++++++.|+.++++|+++.++.+.+||+++++.|++.++++++|+++|+|++.++|+++|++.+++++++
T Consensus 310 ~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~~~~~ 387 (392)
T PRK14046 310 NVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKILAESGLPIITADTLAEAAEKAVEAWKG 387 (392)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHcCCCeeecCCHHHHHHHHHHHHhh
Confidence 999999999988889999999999998764457999888888778888999999999988889999999999999864
No 4
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=2.2e-74 Score=586.78 Aligned_cols=381 Identities=50% Similarity=0.807 Sum_probs=353.6
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
|.|+||++|++|++||||||++.++++.+|+.++++++ |.||+|+|++++.||||| .|||+++ |++++++
T Consensus 1 m~L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~i--g~~PvVvK~~~~~ggkg~-------~GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKL--GAGPVVVKAQVHAGGRGK-------AGGVKVAKSKEEARA 71 (386)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh--CCCcEEEEecccCCCCcc-------CceEEEeCCHHHHHH
Confidence 78999999999999999999999999999999999999 636999999977677777 5999999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC-CCCceeeeccCCCceeeeccccCCCeEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK-TAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~-f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~ 185 (422)
++++++++...+.+..++|..+++|+||+|+++++|+|+|+.+|+. | ||+|+||..||+++|.+.|.+|+.+.++.++
T Consensus 72 a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~-~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~ 150 (386)
T TIGR01016 72 AAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSAR-CPVIMASTEGGVDIEEVAEKSPEKIIKYAID 150 (386)
T ss_pred HHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCC-ceEEEEECCCCccHHHHhhhCccceEEEEcC
Confidence 9999987553333333346677899999999989999999999998 6 9999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCccccchhhc
Q 014588 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF 265 (422)
Q Consensus 186 p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~ 265 (422)
|..++++++++++...+++++.+.+++++++.+||++|.+++++++|||||+++++|+++|+|||+.+||||.|||+.+.
T Consensus 151 p~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~~~ 230 (386)
T TIGR01016 151 PLTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLE 230 (386)
T ss_pred CCcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCC
Q 014588 266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK 345 (422)
Q Consensus 266 ~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~ 345 (422)
.+++..+.++.|..+.+++++|++++|||+|||||||++|+++|++..+|++++||+|++|.++++.|.++++++++||+
T Consensus 231 ~~~~~~~~~~~e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a~~~~~~~al~~l~~dp~ 310 (386)
T TIGR01016 231 EMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGASAERVREALKLVLSDKS 310 (386)
T ss_pred HhhcCCcCChhhhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCCCHHHHHHHHHHHHcCCC
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcC--CCcccccCHHHHHHHHHHHh
Q 014588 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESG--MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 346 vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~G--ip~~vf~~~e~Av~al~~~~ 420 (422)
+|+|++|+++++..|+.++++|+++.++.+.+|||++++.|++.++++++|+++| +| +|++|++|++++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~g~~~~~~~~~L~~~G~~ip--~~~~~~~Av~~~~~~~ 385 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLEGTNVEEGKKILAESGLNII--FATSMEEAAEKAVEAA 385 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHcCCCcc--ccCCHHHHHHHHHHhh
Confidence 9999999998888999999999999887544599988887877788899999999 78 9999999999999886
No 5
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=3.5e-73 Score=578.36 Aligned_cols=384 Identities=52% Similarity=0.817 Sum_probs=349.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
|.|+||++|++|++||||+|++.++++++|+.++++++ +.||+|+|++.+.+||+| +|||+++ |++++++
T Consensus 1 m~l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i--~g~PvVvK~~~~~ggk~~-------~GGV~l~~~~~e~~~ 71 (388)
T PRK00696 1 MNLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEEL--GGGVWVVKAQVHAGGRGK-------AGGVKLAKSPEEARE 71 (388)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHc--CCCcEEEEEeeCCCCCcc-------cccEEEcCCHHHHHH
Confidence 78999999999999999999999999999999999998 338999999976677776 6999999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceee-eccCCCceeeeccccCCCeEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIII-GCSKGGTSIEDLAEKYPNMIVKVPID 185 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~-~g~~GGi~iE~~~d~~~d~~~~~~i~ 185 (422)
++++++++.+.+++..+.|..+.+|+||+|++++.|+|+|+++|+.| ||+|+ +|..||+++|.++|++||.+.++.++
T Consensus 72 a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~f-gpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~ 150 (388)
T PRK00696 72 FAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRAT-RRVVFMASTEGGMDIEEVAEETPEKIHKVAID 150 (388)
T ss_pred HHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCC-CceEEEEeCCCCcchhhhcccCcceeEEEEcC
Confidence 99999977432333334577788999999999899999999999999 89886 55689999999999889988888999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCccccchhhc
Q 014588 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF 265 (422)
Q Consensus 186 p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~ 265 (422)
|..+++.++|++|++.+++++.|.+++++++.+||+++.++++.++|||||+++++|+++|+|||+.+|+++.|||+++.
T Consensus 151 p~~~~~~~~a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~~~ 230 (388)
T PRK00696 151 PLTGLQPFQAREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPDLA 230 (388)
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHhHH
Confidence 98888999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCC
Q 014588 266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK 345 (422)
Q Consensus 266 ~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~ 345 (422)
++++..+.++.|..+...+++|++++|||+|||||||+||+++|++..+|++++||+|++|.++++.|.++++++++||+
T Consensus 231 ~~~~~~~~~~~e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~~~e~~~~aL~~l~~d~~ 310 (388)
T PRK00696 231 ELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAERVAEAFKIILSDPN 310 (388)
T ss_pred hhcCCCcCChhhhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCCCHHHHHHHHHHHhcCCC
Confidence 99888887889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 346 vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
+|+++++++++...++.++++|+++.++.+.+|||++++.|...++.+++|+++|+|+.+|++|++|++++.++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~~~ 386 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKILAESGLNIIAADTLDDAAQKAVEAAK 386 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHCCCCceecCCHHHHHHHHHHHhc
Confidence 9999998887777888999999998776335799988887766778888899999333399999999999999875
No 6
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=2.1e-69 Score=542.03 Aligned_cols=370 Identities=23% Similarity=0.344 Sum_probs=336.5
Q ss_pred cCCCHHHHHHHHHHc-----CCCCCCeeee-CCHHHHHHHHhH---hCCCCCeEEEEEeeccCCCCCCCccCCCcceEEE
Q 014588 28 LNIHEYQGAELMAKY-----GINVPKGLAV-ASVDEVKKAIQD---AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~-----GIpvp~~~~~-~s~~ea~~~a~~---l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l 98 (422)
..|+||++|+||++| |||+|.+.++ ++++|+.+++++ + +..++|+|+|++.||||| +|||++
T Consensus 4 ~~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l--~~~~~VVKaQvl~GgRGK-------aGGVk~ 74 (423)
T PLN02235 4 KKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWL--SSTKLVVKPDMLFGKRGK-------SGLVAL 74 (423)
T ss_pred ccccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhh--CCCcEEEEcccccCCCcc-------cCceEE
Confidence 479999999999999 9999999998 999999999887 7 633569999999999999 499999
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCC
Q 014588 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPN 177 (422)
Q Consensus 99 ~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d 177 (422)
+ |++|+++++++|+++.+++. ++.| .+++|+|||++++.+|+|++++.|+.. ..+++|..||++||. +||
T Consensus 75 ~~s~~Ea~~~a~~~Lg~~l~t~--g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~--~~ii~S~~GGvdIEe----~pe 145 (423)
T PLN02235 75 NLDLAQVATFVKERLGKEVEMG--GCKG-PITTFIVEPFVPHDQEFYLSIVSDRLG--CSISFSECGGIEIEE----NWD 145 (423)
T ss_pred eCCHHHHHHHHHHHhCCceEec--CCCc-cEeEEEEEecCCCcceEEEEEEEecCC--CEEEEECCCCCcccC----Chh
Confidence 9 99999999999999986433 5678 799999999999999999999999997 349999999999996 589
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCc
Q 014588 178 MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA 257 (422)
Q Consensus 178 ~~~~~~i~p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a 257 (422)
.+++++++|..+++++++++++..++. ...+.+.+++.+||++|.+++++++|||||++ .+|+++|+|+++.+||||
T Consensus 146 ~i~k~~Id~~~gl~~~~~~~~~~~l~~--~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~~DDnA 222 (423)
T PLN02235 146 KVKTIFLPTEAPLTSEICAPLIATLPL--EIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGELDDTA 222 (423)
T ss_pred HeEEEEcCCCCCCCHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEcccCCC
Confidence 999999999999999999999988865 56789999999999999999999999999999 888999999999999999
Q ss_pred cccchh-hcccCCC----CCCCHHHH------HHhhcCCce--ecCCCeEEEEEcCccHHHHHHHHHHHCC--CCCCCee
Q 014588 258 AFRQKE-IFALRDP----TQEDPREV------AAAKADLNY--IGLDGEIGCMVNGAGLAMATMDIIKLHG--GTPANFL 322 (422)
Q Consensus 258 ~~r~~~-~~~~~~~----~~~~~~e~------~a~~~~~~~--~~~~g~vaiitngGG~gv~~~D~l~~~G--~~~~NPl 322 (422)
.|||+. +..+..+ .+.++.|. .+...+++| ++++|+||+|+||||++|.++|++..+| ++|+||+
T Consensus 223 ~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFl 302 (423)
T PLN02235 223 AFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 302 (423)
T ss_pred cccCHhHhhhhcccccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceee
Confidence 999998 4333111 23378888 666788999 8899999999999999999999999999 8999999
Q ss_pred eccCCCCHHHHHHHHHHHH----cCCCccEEEEEccCCCCChHHHH---HHHHHHHHhcC-----CCCcEEEEeCCCCHH
Q 014588 323 DVGGNASEGQVVEAFKILT----SDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQVA-----LKVPVVVRLEGTNVD 390 (422)
Q Consensus 323 Dl~g~~~~~~~~~al~~ll----~d~~vd~ilv~i~~~~~~~~~~a---~~i~~~~~~~~-----~~kpivv~~~g~~~~ 390 (422)
|++|+++.+++++++++++ +||+++++|||++||+++|+.+| ++|+++.++.+ .++|||+++.|++.+
T Consensus 303 DvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~e 382 (423)
T PLN02235 303 EYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 382 (423)
T ss_pred ecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHH
Confidence 9999999999999999999 89999999999999999999999 99999999864 368999999999999
Q ss_pred HHHHHHH----HcCCCccccc---CHHHHHHHHHH
Q 014588 391 QGKRILK----ESGMTLITAE---DLDDAAEKAVK 418 (422)
Q Consensus 391 ~~~~~L~----~~Gip~~vf~---~~e~Av~al~~ 418 (422)
+++++|+ +.|+|+++|+ ++++|++.++.
T Consensus 383 eG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~ 417 (423)
T PLN02235 383 KGLAKMRALGEEIGVPIEVYGPEATMTGICKQAID 417 (423)
T ss_pred HHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHh
Confidence 9999999 8999999999 99999999874
No 7
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.7e-66 Score=478.60 Aligned_cols=395 Identities=54% Similarity=0.854 Sum_probs=379.4
Q ss_pred HhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-C
Q 014588 22 QQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K 100 (422)
Q Consensus 22 ~~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~ 100 (422)
.-|.++.+|.|+++|++|.+||+.+-++.++++..|+.+++..+ +....|+|+|++.||||||++-++..|||++- +
T Consensus 14 k~~rR~LNLqEfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f--~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~ 91 (412)
T KOG1447|consen 14 KSQRRFLNLQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRF--NAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKD 91 (412)
T ss_pred HhhhhhccHHHhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhc--CCcceEEeeeeeecCcccceecCCccceeEEecC
Confidence 45778899999999999999999999999999999999999998 76678999999999999999988888999999 9
Q ss_pred HHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEE
Q 014588 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (422)
Q Consensus 101 ~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~ 180 (422)
+.++-+..++|++..+.++|+...|..++.|.|.+.+++.+|-|+++..|++-.||+++.++.||++||.....+|+.++
T Consensus 92 k~~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~If 171 (412)
T KOG1447|consen 92 KNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELIF 171 (412)
T ss_pred HhHHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhhc
Confidence 99999999999999888899988899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCcccc
Q 014588 181 KVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260 (422)
Q Consensus 181 ~~~i~p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r 260 (422)
+.|++...++.+.++.+|.+.|++.+......++-+.+||.+|...+.+.+||||+.-+++|+++++||++.+||+|.||
T Consensus 172 k~piDI~~gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~fR 251 (412)
T KOG1447|consen 172 KEPIDIFEGIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEFR 251 (412)
T ss_pred cccchhccCCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHH
Q 014588 261 QKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL 340 (422)
Q Consensus 261 ~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~l 340 (422)
|++++.+.+.+|.+|.|.+|.+++++|+-++|+|+++.||+|++|.++|.+...|+.|+|++|++|....++++++++++
T Consensus 252 QKdIFamd~~eE~dPrEveAakynLnYigmDGNIaClVNGAGLAMATmDiIkLnGGePANFLDvGGgV~EdqV~~Af~il 331 (412)
T KOG1447|consen 252 QKDIFAMDDKEENDPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVGGGVKEDQVYQAFKIL 331 (412)
T ss_pred hcceeecccccccCchhhhhhhcCcceeeccCceEEEEccchhhhheeeeEEecCCCCcceeeccCcccHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 341 TSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 341 l~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
..||.|++|+||+||++.+|..+|.+|+.+.++...+.|+|+++.|++..+++++|.++|+||.+-.+.++|+...++
T Consensus 332 TaDPkVk~iLvNiFGGIVNCAtIANGiv~A~~kl~LnVPlVVRLEGTNV~~A~~Ilk~SGLpI~tA~dLddAA~KAVa 409 (412)
T KOG1447|consen 332 TADPKVKAILVNIFGGIVNCATIANGIVKACRKLELNVPLVVRLEGTNVQEAQKILKKSGLPITTAIDLDDAAKKAVA 409 (412)
T ss_pred ccCCceeEEEEehhcceehhHhHhhHHHHHHHhhcCCCcEEEEEcCCCHHHHHHHHHhcCCceeeccchHHHHHHHhh
Confidence 999999999999999999999999999999998878999999999999999999999999999999999999887654
No 8
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.1e-64 Score=481.31 Aligned_cols=408 Identities=58% Similarity=0.883 Sum_probs=390.8
Q ss_pred hhhhccccccchhHHhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCC
Q 014588 8 KLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87 (422)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~ 87 (422)
.|+++|. ||+.||.++..++||.+.+||.+||+.+|.++++.|+||+.++++++ |..-+|+|+|.+.||||||+
T Consensus 7 ~l~~~s~----q~~~~~~r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akkl--g~kdlVikAQ~lAgGRgKGt 80 (434)
T KOG2799|consen 7 SLQSKSG----QSYFQAERSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKL--GSKDLVIKAQVLAGGRGKGT 80 (434)
T ss_pred HHHhhch----hhhhhHhhhhhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHh--CCcceEEEeeecccCcccCC
Confidence 6777773 99999999999999999999999999999999999999999999999 65679999999999999999
Q ss_pred ccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCc
Q 014588 88 FKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGT 166 (422)
Q Consensus 88 ~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi 166 (422)
+.|++.|||++. +|+|++....+|++..++++|+++.|..++.|+|.+......|+|++++.|+.+.||+++.+..||+
T Consensus 81 F~SglkgGV~iVf~p~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~ 160 (434)
T KOG2799|consen 81 FDSGLKGGVKIVFSPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGV 160 (434)
T ss_pred cCcCcCCceEEEeChHHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCc
Confidence 999999999999 9999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred eeeeccccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCC-cEE
Q 014588 167 SIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGK-QLV 245 (422)
Q Consensus 167 ~iE~~~d~~~d~~~~~~i~p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g-~~~ 245 (422)
.+|.+...+||.+.+.|++...|++++.|..+...||+++..+...++.+.+|+++|...+.+.+|||||.-+.++ .++
T Consensus 161 ~ie~vae~~pdai~k~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~ 240 (434)
T KOG2799|consen 161 NIEEVAEDTPDAIIKKPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVT 240 (434)
T ss_pred cHHHHhhhCccchhcccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988766 599
Q ss_pred EEeeEEeeCCCccccchhhcccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeecc
Q 014588 246 AADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVG 325 (422)
Q Consensus 246 alDa~i~ld~~a~~r~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~ 325 (422)
+-|+|+.+|+|+.|||.-++.+++..++++.|..|.+.+++|+.++|+++++.||.|++|.++|....+|++|+|++|++
T Consensus 241 c~dak~~fd~na~fRq~~iF~~rd~~QEd~re~~aak~~ln~igldG~igC~vngaglamaTmdiiklhgg~panfldVG 320 (434)
T KOG2799|consen 241 CMDAKLNFDDNAAFRQKKIFLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVG 320 (434)
T ss_pred echhhhcccccHHHHhhhhhhccchhhcCchhhhHHHhccceeccCCccceeeccchhhhhheeeeeecCCCCcceeeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCccc
Q 014588 326 GNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLIT 405 (422)
Q Consensus 326 g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~v 405 (422)
|.++.+...++++++.+||++.+||+|++|++..||.+|.+++.+.+++..+.||++++.|++.+++..++...|+-|+.
T Consensus 321 g~Atve~v~eaf~litsd~kv~ailvnifGgi~rCDvia~Giv~aar~l~~~ipiv~rlqgt~v~~ak~~i~~sgmri~~ 400 (434)
T KOG2799|consen 321 GGATVEQVREAFSLITSDKKVMAILVNIFGGIMRCDVIAFGIVLAARELELNIPIVVRLQGTRVEAAKPIINTSGMRIRS 400 (434)
T ss_pred CCCcHHHHHHHHHHHhcChhHHHHHHHHhcCeeeccceecchhhhhhhhhcCCCEEEEecCCchhhhhhhHhhcCceEEe
Confidence 99999999999999999999999999999999999999999999999987899999999998899999999999999999
Q ss_pred ccCHHHHHHH------HHHHhh
Q 014588 406 AEDLDDAAEK------AVKAIA 421 (422)
Q Consensus 406 f~~~e~Av~a------l~~~~~ 421 (422)
|++.++|++. ++++++
T Consensus 401 ~deldeaa~~~v~~S~ivela~ 422 (434)
T KOG2799|consen 401 FDELDEAAKKAVGGSTIVELAS 422 (434)
T ss_pred chhhhHHhhhhcccchHHHHhh
Confidence 9999999998 555554
No 9
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=1.2e-42 Score=321.66 Aligned_cols=201 Identities=46% Similarity=0.743 Sum_probs=179.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
+|+||++|+||++||||+|++.+++|++|+..+++++ |..++|+|+|++.|||||+ |||+++ |+++++++
T Consensus 1 ~l~EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l--~~~~~VvKaQvl~GgRGK~-------GgVk~~~s~~ea~~~ 71 (202)
T PF08442_consen 1 NLHEYQAKELLRKYGIPVPRGVVATSPEEAREAAKEL--GGKPLVVKAQVLAGGRGKA-------GGVKIAKSPEEAKEA 71 (202)
T ss_dssp BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHH--TTSSEEEEE-SSSSTTTTT-------TCEEEESSHHHHHHH
T ss_pred CchHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh--CCCcEEEEEeEeecCcccC-------CceeecCCHHHHHHH
Confidence 4899999999999999999999999999999999999 7457899999999999994 999999 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecCCC
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~p~ 187 (422)
+++|+++.+.|+|+++.|..++.|+|||++++.+|+|++++.|+..++|+++++..||++||.+..++||.+.++|++|.
T Consensus 72 a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~ 151 (202)
T PF08442_consen 72 AKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPT 151 (202)
T ss_dssp HHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTT
T ss_pred HHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCC
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEE
Q 014588 188 NGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAE 238 (422)
Q Consensus 188 ~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v 238 (422)
.+++++++++++..+|+++...+.+++++.+||++|.++|++++|||||++
T Consensus 152 ~g~~~~~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 152 EGLTPYQAREIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp TB--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999975
No 10
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=3.8e-41 Score=316.23 Aligned_cols=205 Identities=25% Similarity=0.336 Sum_probs=149.5
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC--CH
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KK 101 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~--~~ 101 (422)
+.++..|+|+++|++|+.||||+|++++++|++|+.++++++ | ||||+|+.++. -.|||+ +|||+++ |+
T Consensus 4 ~~g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~i--g-~PvvlKi~sp~-----i~HKsd-~GgV~L~l~~~ 74 (222)
T PF13549_consen 4 AEGRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEI--G-FPVVLKIVSPD-----IAHKSD-VGGVRLNLNSP 74 (222)
T ss_dssp HTT--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH----SSEEEEEE-TT--------HHH-HT-EEEEE-SH
T ss_pred cCCCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHh--C-CCEEEEEecCC-----CCcCCC-CCcEEECCCCH
Confidence 346678999999999999999999999999999999999999 9 89999998652 223466 7999999 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeecC-CCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEE
Q 014588 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS-LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (422)
Q Consensus 102 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~-~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~ 180 (422)
++++++|++|.++.. .+. ++..+++|+||+|++ .|.|+++|+.+||.| ||+|+|| .||+++|.++| .++
T Consensus 75 ~~v~~a~~~l~~~~~---~~~-p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~F-GPvv~~G-~GG~~vE~~~D----~~~ 144 (222)
T PF13549_consen 75 EEVREAFERLRERVA---AHH-PGARIDGVLVQEMAPSGGRELIVGVRRDPQF-GPVVMFG-LGGIFVELLKD----VAF 144 (222)
T ss_dssp HHHHHHHHHHHHHHH---HH--TT----EEEEEE------EEEEEEEEEETTT-EEEEEEE-E-STTHHHH-------EE
T ss_pred HHHHHHHHHHHHHHH---HhC-CCCccceEEEEEcccCCcEEEEEEEEECCCC-CCEEEEc-CCCceeeeecc----eEE
Confidence 999999999998862 222 344578999999998 899999999999999 9999999 99999999985 555
Q ss_pred EEecCCCCCCCHHHHHHHHHhC----------CCCcccHHHHHHHHHHHHHHhhcC-CCcEEeeeeeEEecCCcEEEEee
Q 014588 181 KVPIDVFNGITDEDAAKVVDGL----------APKVADRNDAIEQVKKLYKLFCES-DCTLLEINPLAETSGKQLVAADA 249 (422)
Q Consensus 181 ~~~i~p~~~l~~~~a~~l~~~l----------g~~~~d~~~l~~~l~~l~~l~~~~-~~~~lEiNPl~v~~~g~~~alDa 249 (422)
+ ++| +++.+|++|++++ |.|+.|++++++++.++|+++.++ ++.++|||||+++++| ++|+||
T Consensus 145 ~--l~P---l~~~~a~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g-~~avDa 218 (222)
T PF13549_consen 145 R--LPP---LSEADAREMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDG-AVAVDA 218 (222)
T ss_dssp E--ESS-----HHHHHHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS--EEE--E
T ss_pred e--eCC---CCHHHHHHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCc-eEEEEE
Confidence 4 466 5899999999987 346689999999999999999997 5889999999999999 999999
Q ss_pred EEee
Q 014588 250 KLNF 253 (422)
Q Consensus 250 ~i~l 253 (422)
+|++
T Consensus 219 ~i~l 222 (222)
T PF13549_consen 219 RIRL 222 (222)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9985
No 11
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.88 E-value=2.9e-24 Score=226.74 Aligned_cols=371 Identities=18% Similarity=0.164 Sum_probs=237.9
Q ss_pred hccccccchhHHhhhcccCCCHHHHHHHHHHcC----CCCCCee------eeCCHHHHHHHHhHhCCCCCeEEEEEeecc
Q 014588 11 SRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYG----INVPKGL------AVASVDEVKKAIQDAFPDHKELVVKSQILA 80 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~G----Ipvp~~~------~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~ 80 (422)
-+++-|++-- .+...-+++.++.|.+|| +|+++.. .+-+.......+..+ + +++|.|...+.
T Consensus 10 p~svavigas-----~~~~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dl--a-v~~v~~~~~~~ 81 (598)
T COG1042 10 PKSIAVIGAS-----ERPGKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDL--A-VIVVPAKVVPE 81 (598)
T ss_pred CceEEEeecc-----CCcchhHHHHHHHHHhcCCCceEecCccccccccccccchHhhCCCCCCe--e-EEEechhhhHH
Confidence 3556666654 345667899999999999 9998777 443333333334456 6 78888864331
Q ss_pred CCCCCCCccCCCcceEEEC--CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEE--EEecCCCCCc
Q 014588 81 GGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA--IMLDRKTAGP 156 (422)
Q Consensus 81 g~rgk~~~~s~~~GGV~l~--~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vg--v~~D~~f~gp 156 (422)
.. |+++ .+||+.+ .....+++.+++.......... ..+....++.++..+..+..+| .+.++.| ++
T Consensus 82 i~-----~~~~-~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~---a~~~~~rligPn~~G~~~~~~glna~f~p~~-~~ 151 (598)
T COG1042 82 IV-----HELG-EKGVKGAIVISAGFREAGEEGMELEKELVEA---ARKYGMRIIGPNCLGLINPIIGLNATFDPVF-GL 151 (598)
T ss_pred HH-----HHhh-ccCCceEEEechhhhHHhhhHhHHHHHHHHH---HHhcCceEeccccccccccccccccccCccc-cc
Confidence 10 1122 3556555 4444555555433221000000 1112578999999988999999 8888887 55
Q ss_pred eeeeccCCCceeeeccccCCCeEEEEecCCCCCCCHHHHHHHHH----hCC------CCcccHHHHHHHHHHHHHHhhcC
Q 014588 157 IIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD----GLA------PKVADRNDAIEQVKKLYKLFCES 226 (422)
Q Consensus 157 vi~~g~~GGi~iE~~~d~~~d~~~~~~i~p~~~l~~~~a~~l~~----~lg------~~~~d~~~l~~~l~~l~~l~~~~ 226 (422)
. ++ .|+..++...+ ..+. +.+. +..+ +|-. .+| ..+.+.....+...+...++.|.
T Consensus 152 ~--~~-g~~afvsqsga----v~~~--il~~---~~~~--~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~ 217 (598)
T COG1042 152 G--RG-GGGAFVSQSGA----VSFA--ILDW---ANED--GMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEG 217 (598)
T ss_pred c--cC-CCeEEEEechH----HHHh--ccch---hhhc--CCceeEEEeecchhhcCchHhHHHHhhCccceEEEEEecc
Confidence 4 55 56788887763 3322 1211 1111 1111 011 11111122222222333333333
Q ss_pred -CCcEEeeeeeEEecCCc-EEEEeeEEeeC------------------CCccccchhhcccCCCCCCCHHHHHHhhcCC-
Q 014588 227 -DCTLLEINPLAETSGKQ-LVAADAKLNFD------------------DNAAFRQKEIFALRDPTQEDPREVAAAKADL- 285 (422)
Q Consensus 227 -~~~~lEiNPl~v~~~g~-~~alDa~i~ld------------------~~a~~r~~~~~~~~~~~~~~~~e~~a~~~~~- 285 (422)
+....++||......++ ++++|+..+.. .+++|||.|+++..+ ..|+.....-+
T Consensus 218 ~~~~r~fl~~a~~~~~~kpii~lk~gr~~~~akAa~shTgslag~~~~y~Aa~~~agvir~~~-----~~elf~~~k~l~ 292 (598)
T COG1042 218 VKDGRKFLNAARAAERKKPIIALKAGRSEAGAKAAASHTGSLAGSDEAYDAAFKQAGVIRVES-----IEELFDAAKALS 292 (598)
T ss_pred chhHHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHhcccccccccchhhHHHHHhhCceeccC-----hHHHHHHHHHhc
Confidence 22345677776654433 88888776532 135789999988866 44554443323
Q ss_pred ceecCCC-eEEEEEcCccHHHHHHHHHHHCCCC---------------------CCCeeeccCCCCHHHHHHHHHHHHcC
Q 014588 286 NYIGLDG-EIGCMVNGAGLAMATMDIIKLHGGT---------------------PANFLDVGGNASEGQVVEAFKILTSD 343 (422)
Q Consensus 286 ~~~~~~g-~vaiitngGG~gv~~~D~l~~~G~~---------------------~~NPlDl~g~~~~~~~~~al~~ll~d 343 (422)
.+.++.| |++++|||||.|++++|++.+.|+. ..||+|++|+++.+.|.++++.+++|
T Consensus 293 ~~~~~~g~~~~ivtn~Gg~gvla~D~l~~~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~ 372 (598)
T COG1042 293 HQPPPAGDRVAIITNGGGPGVLAADALEERGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRD 372 (598)
T ss_pred cCCCCCCcceeEEecCCCccccchhHHHHcCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhc
Confidence 3445566 9999999999999999999999972 48999999999999999999999999
Q ss_pred CCccEEEEE-ccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 344 EKVKAILVN-IFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 344 ~~vd~ilv~-i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
+++|+++++ +++........+..++.+ ...+.+||+++. ++|.....+.+.|++.||| +|.+|++|++++.++++
T Consensus 373 ~~~~~llvi~~~~~~~~~~~~a~~~~~~-~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip--~~~~pe~a~~a~~~l~~ 449 (598)
T COG1042 373 ENVDALLVIVLPPASADPEETAEAIIRA-TAKKRGKPVVVSSMGGESSEKARRLLEEAGIP--TYPTPERAVKALSALAR 449 (598)
T ss_pred cCCceEEEEecCCCCCCchhhhHHHHHh-hhhhCCCceEEEecCCcchHHHHHHhhhcCCC--CccCchHHHHHHHHHHH
Confidence 999999985 444444556778888875 222257997765 7775677788999999999 99999999999998864
No 12
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.83 E-value=8.5e-20 Score=189.27 Aligned_cols=157 Identities=25% Similarity=0.337 Sum_probs=127.9
Q ss_pred ccccchhhcccCCCCCCCHHHHHHhhcCCceec-CCC-eEEEEEcCccHHHHHHHHHHHCCCC-----------------
Q 014588 257 AAFRQKEIFALRDPTQEDPREVAAAKADLNYIG-LDG-EIGCMVNGAGLAMATMDIIKLHGGT----------------- 317 (422)
Q Consensus 257 a~~r~~~~~~~~~~~~~~~~e~~a~~~~~~~~~-~~g-~vaiitngGG~gv~~~D~l~~~G~~----------------- 317 (422)
+.|||.|+++.++.+ |+.....-+...+ ++| ||+|+|||||.|++++|++++.|++
T Consensus 264 a~~~~~Gv~~~~~~~-----el~~~~~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp 338 (447)
T TIGR02717 264 AAFKQAGVIRADSIE-----ELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILP 338 (447)
T ss_pred HHHHHCCeEEeCCHH-----HHHHHHHHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCc
Confidence 689999999998744 4443332333333 355 9999999999999999999999984
Q ss_pred ----CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc-CCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC-CCHHH
Q 014588 318 ----PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF-GGIMKCDVIASGIVNAAKQVALKVPVVVRLEG-TNVDQ 391 (422)
Q Consensus 318 ----~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~-~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g-~~~~~ 391 (422)
+.||+|+++..+++.|.++++++++||++|++++++. ++...++.+++.++++.++. .+||+++++.| ...++
T Consensus 339 ~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~-~~KPvv~~~~gg~~~~~ 417 (447)
T TIGR02717 339 PEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKS-NEKPVVAGFMGGKSVDP 417 (447)
T ss_pred cccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhc-CCCcEEEEecCCccHHH
Confidence 3599999988999999999999999999999998654 34446688999999987763 28999887654 45667
Q ss_pred HHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 392 GKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 392 ~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
.++.|+++||| +|++|++|++++..+.+
T Consensus 418 ~~~~L~~~Gip--~f~~p~~A~~al~~~~~ 445 (447)
T TIGR02717 418 AKRILEENGIP--NYTFPERAVKALSALYR 445 (447)
T ss_pred HHHHHHhCCCC--ccCCHHHHHHHHHHHHh
Confidence 78889999999 99999999999998764
No 13
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.55 E-value=3.1e-14 Score=126.19 Aligned_cols=120 Identities=44% Similarity=0.636 Sum_probs=109.0
Q ss_pred EEcCccHHHHHHHHHHHC--------------CCCCCCeeeccCCCC----------HHHHHHHHHHHHcCCCccEEEEE
Q 014588 297 MVNGAGLAMATMDIIKLH--------------GGTPANFLDVGGNAS----------EGQVVEAFKILTSDEKVKAILVN 352 (422)
Q Consensus 297 itngGG~gv~~~D~l~~~--------------G~~~~NPlDl~g~~~----------~~~~~~al~~ll~d~~vd~ilv~ 352 (422)
++||||+++-++|.+..+ |..++|++|++|+.. ++...++++.+++||++++||++
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 589999999999999999 999999999999999 67899999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHhcC---CCCcEEEEeCCCCHH-----HHHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 353 IFGGIMKCDVIASGIVNAAKQVA---LKVPVVVRLEGTNVD-----QGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 353 i~~~~~~~~~~a~~i~~~~~~~~---~~kpivv~~~g~~~~-----~~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
+++++..|++.|.+++++.++.+ ..+|+|+++.|++.+ +..+.|+++|++ ++++-.+|+++..+
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~~L~~~G~~--v~~s~~~A~~~A~a 152 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAGALEDAGVI--VAESNAQAARAAGA 152 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHHHHHCTTCS--CHHHHHHHHHHHTH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHHHHHhCCCc--ccccHHHHHHHcCC
Confidence 99999999999999999988754 678999998887666 788899999999 99999999987643
No 14
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.35 E-value=1.1e-11 Score=113.88 Aligned_cols=101 Identities=26% Similarity=0.301 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeE-EEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHH
Q 014588 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKEL-VVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~Pv-VlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~ 108 (422)
++..+|++|++|||||+++..+++.++|.++.+.. + +|+ |+|++.+.+ || ||.+. |.+++.++.
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~--~-~p~~ViKadGla~--GK---------GV~i~~~~~eA~~~l 67 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQ--G-YPYVVIKADGLAA--GK---------GVVIADDREEALEAL 67 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHH--S-SSEEEEEESSSCT--TT---------SEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhc--C-CCceEEccCCCCC--CC---------EEEEeCCHHHHHHHH
Confidence 45679999999999999999999999999999999 7 788 999998875 35 48898 999999999
Q ss_pred HHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCC
Q 014588 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (422)
Q Consensus 109 ~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f 153 (422)
++++... ..|..-+.|+|||++. |.|+.+.+..|...
T Consensus 68 ~~~~~~~-------~fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~ 104 (194)
T PF01071_consen 68 REIFVDR-------KFGDAGSKVVIEEFLE-GEEVSLFALTDGKN 104 (194)
T ss_dssp HHHHTSS-------TTCCCGSSEEEEE----SEEEEEEEEEESSE
T ss_pred HHhcccc-------ccCCCCCcEEEEeccC-CeEEEEEEEEcCCe
Confidence 9999643 2344457999999998 99999999999765
No 15
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.28 E-value=3.2e-12 Score=135.71 Aligned_cols=119 Identities=26% Similarity=0.381 Sum_probs=102.9
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 26 ~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
+...++++++++++++|||++|++ +..+.+|+..+++.+ + |..++. -.|||+ +|||.++ +..++
T Consensus 467 ~~~~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~--~------Kl~s~~-----i~hkse-v~gv~l~~~~~~v 531 (598)
T COG1042 467 GGTTLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESI--G------KLRSPD-----IDHKSE-VGGVMLNRTADAV 531 (598)
T ss_pred CccccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHh--h------hccCCc-----cchhhh-ccceeecCcHHHH
Confidence 445789999999999999999999 999999999999998 4 664331 112355 7999999 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccc
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE 173 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d 173 (422)
+++++.+..+ + ..+.+++||+|.. .|+++++.+|+.| ||+++|| .||+.+|.++|
T Consensus 532 ~~a~~~~~~~--------p--a~i~g~lvq~m~~--~E~~vgv~~dp~f-gp~i~~G-~Gg~~ve~l~d 586 (598)
T COG1042 532 EKAADDILAR--------P--ARIAGVLVQTMAK--LELIVGVKNDPTF-GPLILFG-EGGIEVEVLKD 586 (598)
T ss_pred HHHHHhHhcc--------c--chhhhhhhHhhhh--ccceeeccCCCcc-hhHHHhc-CCceEEEeecc
Confidence 9999999865 2 3478999999998 9999999999999 9999999 99999999985
No 16
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.24 E-value=4.5e-11 Score=119.87 Aligned_cols=128 Identities=27% Similarity=0.336 Sum_probs=107.6
Q ss_pred chhhhhhhhhccccccchhHHhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccC
Q 014588 2 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAG 81 (422)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g 81 (422)
+-|+.+.|-.+-+.|.|-. +.--+..=++..+|+||++||||++.+..+++++++.++.++. | .|+|+|++.+.+
T Consensus 76 ~~GvvD~l~~~Gi~vFGPs--k~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~--g-~piVVKadGLaa 150 (428)
T COG0151 76 VAGVVDALRAAGIPVFGPT--KAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEK--G-APIVVKADGLAA 150 (428)
T ss_pred hhhhHHHHHHCCCceeCcC--HHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHc--C-CCEEEecccccC
Confidence 4678888888888888876 3344567788999999999999999999999999999999999 8 799999999876
Q ss_pred CCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCC
Q 014588 82 GRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (422)
Q Consensus 82 ~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f 153 (422)
|| ||++. +.+++.++.++++.... .|.....|+|||++. |.|+++-+..|...
T Consensus 151 --GK---------GV~V~~~~eeA~~a~~~~l~~~~-------fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~ 204 (428)
T COG0151 151 --GK---------GVIVAMTLEEAEAAVDEMLEGNA-------FGSAGARVVIEEFLD-GEEFSLQAFVDGKT 204 (428)
T ss_pred --CC---------CeEEcCCHHHHHHHHHHHHhhcc-------ccCCCCcEEEEeccc-ceEEEEEEEEcCCe
Confidence 45 49999 99999999999987641 232225799999999 89999999999765
No 17
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.14 E-value=6.9e-10 Score=126.58 Aligned_cols=167 Identities=23% Similarity=0.318 Sum_probs=115.0
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
....+....|++|+++|||+|++..+++.+|+.++++.+ | ||+|+||....+ |+ |+.+. |++++.
T Consensus 124 ~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~i--g-yPvVVKP~~g~g--G~---------Gv~iv~~~eEL~ 189 (1068)
T PRK12815 124 QKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKI--G-FPIIVRPAYTLG--GT---------GGGIAENLEELE 189 (1068)
T ss_pred HHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHc--C-CCEEEEECcCCC--CC---------ceEEECCHHHHH
Confidence 345677788999999999999999999999999999999 8 899999974333 33 35567 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccc---cCCCeEEEE
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE---KYPNMIVKV 182 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d---~~~d~~~~~ 182 (422)
+++++.++.. ....++||+++++..|+++.+.+|.. |-++.++. +|.+.. .+.|.+.
T Consensus 190 ~a~~~~~~~s-----------~~~~vLVEe~I~G~~E~sv~v~rD~~--g~~~~~~~-----~e~~~p~gi~tG~s~~-- 249 (1068)
T PRK12815 190 QLFKQGLQAS-----------PIHQCLLEESIAGWKEIEYEVMRDRN--GNCITVCN-----MENIDPVGIHTGDSIV-- 249 (1068)
T ss_pred HHHHHHHhcC-----------CCCeEEEEEccCCCeEEEEEEEEcCC--CCEEEEEe-----ceecccccccCCceEE--
Confidence 9998876542 12479999999977899999999975 45555552 232211 1122322
Q ss_pred ecCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc---CCCcEEeeeeeEE
Q 014588 183 PIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE 238 (422)
Q Consensus 183 ~i~p~~~l~~~-------~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~---~~~~~lEiNPl~v 238 (422)
+.|.+.+++. .+.++++.||+.+... .+++.+ .+...+||||.+-
T Consensus 250 -v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~----------vef~l~~~~g~~~ViEINPR~~ 304 (1068)
T PRK12815 250 -VAPSQTLTDDEYQMLRSASLKIISALGVVGGCN----------IQFALDPKSKQYYLIEVNPRVS 304 (1068)
T ss_pred -EecCCCCCHHHHHHHHHHHHHHHHHcCCCCceE----------EEEEEECCCCcEEEEEEecCcc
Confidence 2343345554 4555677777654211 133433 2366899999764
No 18
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.09 E-value=7.9e-09 Score=101.87 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=86.7
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
++-+...++...|++|+++|||+|++..+.+.+++..+++.+ + ||+|+||....+ + -||.+. |.+
T Consensus 91 ~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~--~-~P~ivKP~~g~~--s---------~Gv~~v~~~~ 156 (304)
T PRK01372 91 LASALAMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKL--G-LPLVVKPAREGS--S---------VGVSKVKEED 156 (304)
T ss_pred HHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhc--C-CCEEEeeCCCCC--C---------CCEEEeCCHH
Confidence 344455788999999999999999999999999988888998 8 899999975322 2 357777 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCC
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGG 165 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GG 165 (422)
++.++++++... ...++||+|++ |.|+.+.+..|..+ |++-+...++
T Consensus 157 el~~~~~~~~~~-------------~~~~lvEe~i~-G~E~~v~vi~~~~~--~~~~~~~~~~ 203 (304)
T PRK01372 157 ELQAALELAFKY-------------DDEVLVEKYIK-GRELTVAVLGGKAL--PVIEIVPAGE 203 (304)
T ss_pred HHHHHHHHHHhc-------------CCcEEEEcccC-CEEEEEEEECCCcc--ceEEEEecCC
Confidence 999888776421 14799999998 89999999887654 4444432344
No 19
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.09 E-value=1.4e-09 Score=101.99 Aligned_cols=107 Identities=24% Similarity=0.352 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCCCCCeeee--CCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHH
Q 014588 32 EYQGAELMAKYGINVPKGLAV--ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (422)
Q Consensus 32 e~~ak~lL~~~GIpvp~~~~~--~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~ 108 (422)
...+++++++.|+|++++... ++.+|+.++++++ | |||++||.. ++.|+ |.++. |.+++.+++
T Consensus 2 k~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~i--G-yPVliKas~--ggGG~---------gm~iv~~~~eL~~~~ 67 (211)
T PF02786_consen 2 KIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEI--G-YPVLIKASA--GGGGR---------GMRIVHNEEELEEAF 67 (211)
T ss_dssp HHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH----SSEEEEETT--SSTTT---------SEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhc--C-CceEEeecc--ccccc---------ccccccchhhhhhhh
Confidence 457899999999999999988 9999999999999 9 899999964 33344 47788 999999999
Q ss_pred HHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 109 ~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+....... . ..| ...++||+++...+|+-+-+.+|.. |-++.+|
T Consensus 68 ~~~~~~s~---~--~fg--~~~v~iek~i~~~reiEvqvi~D~~--gn~~~~~ 111 (211)
T PF02786_consen 68 ERAQRESP---A--AFG--DGPVLIEKFIEGAREIEVQVIRDGK--GNVVHLG 111 (211)
T ss_dssp HHHHHHHH---H--HHS--TS-EEEEE--SSEEEEEEEEEEETT--SEEEEEE
T ss_pred hhccccCc---c--ccc--cceEEEeeehhhhhhhhhhhhhccc--cceeeee
Confidence 88765431 0 012 2589999999977999999999985 6677655
No 20
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.07 E-value=1.6e-09 Score=112.94 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=88.0
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CH
Q 014588 25 LRRLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ 101 (422)
.-+..-+++..|++|+++|||+|++. .+++.+|+.++++.+ | ||+|+||....| | -||.+. |.
T Consensus 109 ~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~i--g-~PvvvKP~~g~g--s---------~Gv~~v~~~ 174 (449)
T TIGR00514 109 SIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRI--G-YPVIIKATAGGG--G---------RGMRVVREP 174 (449)
T ss_pred HHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHh--C-CCEEEEeCCCCC--C---------CccEEECCH
Confidence 33445678899999999999998874 778999999999999 8 899999965332 2 358888 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 102 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++.++++...+... . ..+ ...++||+|+++++|+.+.+..|.. |.++.++
T Consensus 175 ~el~~~~~~~~~~~~--~---~~~--~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~ 225 (449)
T TIGR00514 175 DELVKSISMTRAEAK--A---AFG--NDGVYIEKYIENPRHVEIQVLADKY--GNAIYLG 225 (449)
T ss_pred HHHHHHHHHHHHHHH--H---hCC--CCCEEEEECCCCCeEEEEEEEEcCC--CCEEEEe
Confidence 999999987654320 0 011 2479999999978899999999863 6666665
No 21
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.07 E-value=1.4e-09 Score=112.56 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=86.0
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHH
Q 014588 25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee 103 (422)
.-+..-++..+|++|+++|||+|++..+++.+|+.++++++ + ||+|+||....+ || ||.+. |.++
T Consensus 102 aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~--~-~PvVVKp~~~~~--gk---------GV~vv~~~ee 167 (426)
T PRK13789 102 CAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESE--M-LPIVIKADGLAA--GK---------GVTVATEKKM 167 (426)
T ss_pred HHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhc--C-CCEEEEeCCCCC--CC---------cEEEECCHHH
Confidence 44455689999999999999999999999999999999999 8 899999985433 44 58888 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 104 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+.+++++++... ..|.....++||||++ |.|+.+.+..|.
T Consensus 168 l~~a~~~~~~~~-------~~g~~~~~vlIEEfl~-G~E~Sv~~~~dg 207 (426)
T PRK13789 168 AKRALKEIFKDK-------KFGQSGNQVVIEEFME-GQEASIFAISDG 207 (426)
T ss_pred HHHHHHHHHhhc-------cccCCCCeEEEEECcC-CeEEEEEEEECC
Confidence 999999987432 1122224799999999 689999998875
No 22
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.05 E-value=9.1e-09 Score=93.44 Aligned_cols=111 Identities=19% Similarity=0.240 Sum_probs=80.0
Q ss_pred HHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEECCHHHHHHHHHHHhcccccc
Q 014588 39 MAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVT 118 (422)
Q Consensus 39 L~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~~~ee~~~a~~~l~~~~~~~ 118 (422)
|++.|||||+|..+++.+|+.++++++ | ||+|+|+.. .|+.|| |-+.+.+.+++..+++.+-
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~i--G-~P~vlK~~~-~GYDGk--------Gq~~i~~~~dl~~a~~~~~------ 62 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESI--G-FPAVLKTRR-GGYDGK--------GQFVIRSEEDLEKAWQELG------ 62 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHH--T-SSEEEEESS-SSCTTT--------TEEEESSGGGHHHHHHHTT------
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHc--C-CCEEEEccC-cCcCCC--------ccEEECCHHHHHHHHHhcC------
Confidence 678999999999999999999999999 9 899999753 366777 3344449999999988871
Q ss_pred cccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecCC
Q 014588 119 KQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (422)
Q Consensus 119 ~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~p 186 (422)
-..+++|++++..+|+.+-+.||.. |-+..+-. +|...+ |.++..-+.|
T Consensus 63 ---------~~~~ilE~~v~f~~EiSvivaR~~~--G~~~~yp~-----~en~~~---~~il~~s~~P 111 (172)
T PF02222_consen 63 ---------GGPCILEEFVPFDREISVIVARDQD--GEIRFYPP-----VENVHR---DGILHESIAP 111 (172)
T ss_dssp ---------TSCEEEEE---ESEEEEEEEEEETT--SEEEEEEE-----EEEEEE---TTEEEEEEES
T ss_pred ---------CCcEEEEeccCCcEEEEEEEEEcCC--CCEEEEcC-----ceEEEE---CCEEEEEECC
Confidence 1368999999999999999999875 66666662 454432 4555554455
No 23
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.04 E-value=3.2e-09 Score=121.06 Aligned_cols=107 Identities=23% Similarity=0.329 Sum_probs=87.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-+....|++|+++|||+|++..+++.+|+.++++++ | ||+|+||.... .|+ |+.+. |++++.+
T Consensus 124 ~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i--g-yPvIVKP~~g~--gg~---------Gv~iv~~~eeL~~ 189 (1050)
T TIGR01369 124 KAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEI--G-YPVIVRPAFTL--GGT---------GGGIAYNREELKE 189 (1050)
T ss_pred HhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHh--C-CCeEEECCCCC--CCC---------CeEEECCHHHHHH
Confidence 34677888999999999999999999999999999999 8 89999997432 233 46677 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++.+... + ...++||+++++.+|+.+.+.+|.. |.++.++
T Consensus 190 ~~~~~~~~s-------~----~~~vlVEe~I~G~~Eiev~v~rd~~--g~~~~~~ 231 (1050)
T TIGR01369 190 IAERALSAS-------P----INQVLVEKSLAGWKEIEYEVMRDSN--DNCITVC 231 (1050)
T ss_pred HHHHHHhcC-------C----CCcEEEEEcccCceEEEEEEEEeCC--CCEEEEe
Confidence 988876432 1 2479999999977999999999964 5677665
No 24
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.03 E-value=4e-09 Score=109.87 Aligned_cols=111 Identities=20% Similarity=0.231 Sum_probs=86.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCe--eeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~--~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
..-+++..|++|+++|||+|++ ..+++.+|+.++++.+ | ||+|+||... +.| -||.+. |.+++
T Consensus 112 ~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~--g-~PvvvKP~~g--~gs---------~Gv~iv~~~~el 177 (451)
T PRK08591 112 LMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEI--G-YPVIIKATAG--GGG---------RGMRVVRTEAEL 177 (451)
T ss_pred HhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHc--C-CCEEEEECCC--CCC---------ceEEEECCHHHH
Confidence 4467889999999999999987 4788999999999999 8 8999999642 223 368888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
.++++....... . ..+ ...++||+|++++.|+.+.+..|.. |.++.++
T Consensus 178 ~~~~~~~~~~~~---~--~~~--~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~ 225 (451)
T PRK08591 178 EKAFSMARAEAK---A--AFG--NPGVYMEKYLENPRHIEIQVLADGH--GNAIHLG 225 (451)
T ss_pred HHHHHHHHHHHH---H--hcC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence 999998754320 0 012 1469999999977899999999874 5666554
No 25
>PLN02735 carbamoyl-phosphate synthase
Probab=99.02 E-value=4.6e-09 Score=119.82 Aligned_cols=167 Identities=21% Similarity=0.296 Sum_probs=113.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
...++...|++|+++|||+|++..+++.+|+.++++.+ |.||+|+||....|| + |+.+. |.+|+++
T Consensus 141 ~~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~i--G~yPvVVKP~~~~GG--~---------Gv~iv~n~eEL~~ 207 (1102)
T PLN02735 141 KAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDI--GEFPLIIRPAFTLGG--T---------GGGIAYNKEEFET 207 (1102)
T ss_pred HhcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHh--CCCCEEEEeCCCCCC--C---------ceEEECCHHHHHH
Confidence 34677889999999999999999999999999999998 646999999754433 2 35677 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccc---cCCCeEEEEe
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE---KYPNMIVKVP 183 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d---~~~d~~~~~~ 183 (422)
++++.+... ....++||+++.+++|+.+.+.+|.. |.++.++. +|.++. ...+.+.
T Consensus 208 a~~~a~~~s-----------~~~~VLVEe~I~G~kE~ev~Vl~D~~--g~~i~v~~-----ie~~dp~gvh~G~s~~--- 266 (1102)
T PLN02735 208 ICKAGLAAS-----------ITSQVLVEKSLLGWKEYELEVMRDLA--DNVVIICS-----IENIDPMGVHTGDSIT--- 266 (1102)
T ss_pred HHHHHHhcC-----------CCCeEEEEEecCCCeEEEEEEEEcCC--CCEEEEee-----EEEEcCCccccCCEEE---
Confidence 998865432 12579999999977999999999965 45555542 333210 1123322
Q ss_pred cCCCCCCCHH-------HHHHHHHhCCCC-cccHHHHHHHHHHHHHHhhc---CCCcEEeeeeeEE
Q 014588 184 IDVFNGITDE-------DAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE 238 (422)
Q Consensus 184 i~p~~~l~~~-------~a~~l~~~lg~~-~~d~~~l~~~l~~l~~l~~~---~~~~~lEiNPl~v 238 (422)
+.|.+.+++. .|.++++.||+. +...- +++.+ .+...+|+||.+-
T Consensus 267 vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nV----------qf~l~~~~g~~~ViEVNPR~s 322 (1102)
T PLN02735 267 VAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNV----------QFAVNPVDGEVMIIEMNPRVS 322 (1102)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEE----------EEEEECCCCcEEEEEecCCCC
Confidence 2233335543 344567777873 42111 34443 2467899999764
No 26
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.02 E-value=2.7e-09 Score=110.56 Aligned_cols=106 Identities=27% Similarity=0.240 Sum_probs=85.1
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHH
Q 014588 25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee 103 (422)
.-+..-++..+|++|+++|||+|++..+++.+|+.++++.+ + ||+|+||.... .|| ||.+. |.++
T Consensus 96 aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~--g-~PvVVKp~~~~--~Gk---------GV~iv~~~~e 161 (434)
T PLN02257 96 AAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQ--G-APIVVKADGLA--AGK---------GVVVAMTLEE 161 (434)
T ss_pred HHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHc--C-CCEEEEcCCCC--CCC---------CEEEECCHHH
Confidence 33455689999999999999999999999999999999999 8 89999998543 344 58888 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 104 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+.+++++++.... .|.....++||||+. |.|+.+.+.+|..
T Consensus 162 l~~a~~~~~~~~~-------fg~~~~~vlIEefi~-G~E~Sv~~~~dG~ 202 (434)
T PLN02257 162 AYEAVDSMLVKGA-------FGSAGSEVVVEEFLD-GEEASFFALVDGE 202 (434)
T ss_pred HHHHHHHHHhhhh-------ccCCCCeEEEEECCC-CCEEEEEEEECCC
Confidence 9999998864321 122235799999999 6799998778853
No 27
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.01 E-value=3.9e-09 Score=111.20 Aligned_cols=173 Identities=20% Similarity=0.302 Sum_probs=114.5
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CH
Q 014588 25 LRRLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIpvp~~~~--~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ 101 (422)
.-+..-++..+|++|+++|||+|++.. +++.+|+.++++++ | ||+++||.. ||-|| |+++. |+
T Consensus 109 ~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~i--g-yPvvIKp~~--GgGG~---------Gv~iv~~~ 174 (499)
T PRK08654 109 VIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEI--G-YPVIIKASA--GGGGI---------GMRVVYSE 174 (499)
T ss_pred HHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHh--C-CCEEEEeCC--CCCCC---------eEEEeCCH
Confidence 334456889999999999999998865 68999999999999 8 899999964 33233 68888 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEE
Q 014588 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK 181 (422)
Q Consensus 102 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~ 181 (422)
+++.++++....... . ..+. ..++||+|+++++|+.+.+..|.. |.++.++ .. +. .+.+.+...+ .
T Consensus 175 ~eL~~a~~~~~~~a~----~-~f~~--~~v~vE~~I~~~r~ieVqvl~d~~--G~vv~l~-~r--ec-siqrr~qk~i-e 240 (499)
T PRK08654 175 EELEDAIESTQSIAQ----S-AFGD--STVFIEKYLEKPRHIEIQILADKH--GNVIHLG-DR--EC-SIQRRHQKLI-E 240 (499)
T ss_pred HHHHHHHHHHHHHHH----H-hCCC--CeEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe-ee--cc-ccccCccceE-E
Confidence 999999987653221 0 1121 479999999988999999999964 6777655 11 11 1111222121 1
Q ss_pred EecCCCCCCCHHH-------HHHHHHhCCCCcc-cHHHHHHHHHHHHHHhh-cCCCcEEeeeeeEE
Q 014588 182 VPIDVFNGITDED-------AAKVVDGLAPKVA-DRNDAIEQVKKLYKLFC-ESDCTLLEINPLAE 238 (422)
Q Consensus 182 ~~i~p~~~l~~~~-------a~~l~~~lg~~~~-d~~~l~~~l~~l~~l~~-~~~~~~lEiNPl~v 238 (422)
..|...+++.. |.++++.+|+.+. .+ +++. +.....+||||.+-
T Consensus 241 --~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtV-----------Efl~~~g~~yflEiNpRlq 293 (499)
T PRK08654 241 --EAPSPIMTPELRERMGEAAVKAAKAINYENAGTV-----------EFLYSNGNFYFLEMNTRLQ 293 (499)
T ss_pred --ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEE-----------EEEEECCcEEEEEEECCCC
Confidence 12322244433 4555666776542 11 2222 34577999999874
No 28
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.00 E-value=4.4e-09 Score=105.34 Aligned_cols=168 Identities=21% Similarity=0.271 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
.-+..-.|++|++.|+|+| +.++++++|+.+.++.+ | |||++||....||. | +.+. |.+|+.+.
T Consensus 114 aeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~i--g-~PvIVrP~~~lGG~----------G-~~i~~n~eel~~~ 178 (400)
T COG0458 114 AEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEI--G-YPVIVKPSFGLGGS----------G-GGIAYNEEELEEI 178 (400)
T ss_pred hhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhc--C-CCEEEecCcCCCCC----------c-eeEEeCHHHHHHH
Confidence 3456678999999999999 77999999999999999 9 99999996544321 2 3455 99999988
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecCCC
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF 187 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~p~ 187 (422)
....+... .+..+++|+++.++.|+...+.+|... .+|+++.++=.+---+. .-|++. +.|.
T Consensus 179 ~~~~l~~s-----------~~~~vl~eesi~G~ke~e~ev~rd~~~--n~ivvc~men~dp~gvh--tgdsi~---vapa 240 (400)
T COG0458 179 IEEGLRAS-----------PVEEVLIEESIIGWKEFEYEVVRDGKD--NCIVVCNMENLDPMGVH--TGDSIT---VAPA 240 (400)
T ss_pred HHhccccC-----------ccccceeeeeecCceEEEEEEEEeCCC--CEEEEEeCCcccccccc--ccceee---eccc
Confidence 88876554 246899999999999999999999975 56666645433211111 123333 3444
Q ss_pred CCCCHH--HH-----HHHHHhCCCCcccHHHHHHHHHHHHHHhhcC---CCcEEeeeeeEEe
Q 014588 188 NGITDE--DA-----AKVVDGLAPKVADRNDAIEQVKKLYKLFCES---DCTLLEINPLAET 239 (422)
Q Consensus 188 ~~l~~~--~a-----~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~---~~~~lEiNPl~v~ 239 (422)
+.+++. +. -+.++.+|..+...- |+..+. +...+|+||.+-.
T Consensus 241 qtl~d~eyq~~r~~~~~iir~igi~G~~ni----------Q~av~~~~~~~~viEvNpRvSr 292 (400)
T COG0458 241 QTLTDKEYQMLRDAAIKVIREIGIEGGCNI----------QFAVDPGGGELYVIEINPRVSR 292 (400)
T ss_pred cccccHHHHHHHHHHHHHHHHhcccCCCce----------eEEEcCCCceEEEEEecCCcCc
Confidence 444442 22 234666676543322 233433 3567899997653
No 29
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.99 E-value=6.7e-09 Score=118.73 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=113.7
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
+...+....|++|+++|||+|++..+++.+|+.++++++ | ||+|+||.... .|+ |+.+. |++++.
T Consensus 124 ~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~i--g-~PvVVKP~~g~--gg~---------Gv~iv~~~eeL~ 189 (1066)
T PRK05294 124 DKAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEI--G-YPVIIRPSFTL--GGT---------GGGIAYNEEELE 189 (1066)
T ss_pred HHhcCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHc--C-CCeEEEcCCCC--CCC---------CeEEECCHHHHH
Confidence 345678888999999999999999999999999999999 8 89999997422 233 46777 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccc--cCCCeEEEEe
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE--KYPNMIVKVP 183 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d--~~~d~~~~~~ 183 (422)
+++++.+... ....++||+++++..|+.+.+.+|.. |.++.++. +|.++. .+...+. .
T Consensus 190 ~a~~~~~~~s-----------~~~~vlvEe~I~G~~Eisv~v~rd~~--g~~~~~~~-----~e~~dp~gih~g~~~--~ 249 (1066)
T PRK05294 190 EIVERGLDLS-----------PVTEVLIEESLLGWKEYEYEVMRDKN--DNCIIVCS-----IENIDPMGVHTGDSI--T 249 (1066)
T ss_pred HHHHHHHhhC-----------CCCeEEEEEcccCceEEEEEEEEcCC--CCEEEEee-----eeeccccceecCCeE--E
Confidence 9998765432 12479999999977899999999975 55666552 232210 0001111 1
Q ss_pred cCCCCCCCH-------HHHHHHHHhCCCC-cccHHHHHHHHHHHHHHhhc---CCCcEEeeeeeEE
Q 014588 184 IDVFNGITD-------EDAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE 238 (422)
Q Consensus 184 i~p~~~l~~-------~~a~~l~~~lg~~-~~d~~~l~~~l~~l~~l~~~---~~~~~lEiNPl~v 238 (422)
+.|...+++ ..|.++++.||+. +... .+++.+ .++..+||||.+-
T Consensus 250 ~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~----------vef~~~~~~g~~~viEiNPR~~ 305 (1066)
T PRK05294 250 VAPAQTLTDKEYQMLRDASIAIIREIGVETGGCN----------VQFALNPKDGRYIVIEMNPRVS 305 (1066)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceE----------EEEEEECCCCcEEEEEeecCCC
Confidence 223323454 3445667777876 5311 133433 2467899999764
No 30
>PLN02735 carbamoyl-phosphate synthase
Probab=98.96 E-value=1.1e-08 Score=116.75 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=89.5
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
+.-...-+....|++|+++|||+|++..+++.+|+.++++.+ | |||++||....| |+ |+.+. |.+
T Consensus 695 e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~~~a~~i--G-yPvvVKP~~g~g--G~---------G~~iV~~~e 760 (1102)
T PLN02735 695 DSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRI--G-YPVVVRPSYVLG--GR---------AMEIVYSDD 760 (1102)
T ss_pred HHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHHHHHHhc--C-CCeEEEeCCCCC--CC---------cEEEECCHH
Confidence 444456788899999999999999999999999999999999 8 899999965322 33 57788 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++.+++++..... + -..++||+|++.++|+.+.+.+|.. |-+++++
T Consensus 761 eL~~al~~a~~~~---------~--~~~vlVEefI~~g~Ei~V~vl~D~~--G~vv~~~ 806 (1102)
T PLN02735 761 KLKTYLETAVEVD---------P--ERPVLVDKYLSDATEIDVDALADSE--GNVVIGG 806 (1102)
T ss_pred HHHHHHHHHHHhc---------C--CCCEEEEEecCCcEEEEEEEEECCC--CCEEEec
Confidence 9999999876432 1 1369999999888999999999865 4555444
No 31
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.96 E-value=5.2e-08 Score=98.28 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=84.8
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
+.-+..-++...|++|+++|||+|++..+++.+++.++++.+ | ||+|+||... ++.| .||.+. |.+
T Consensus 91 ~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~~~-g~~g---------~Gv~~v~~~~ 157 (352)
T TIGR01161 91 DALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQEL--G-FPVVLKARTG-GYDG---------RGQYRIRNEA 157 (352)
T ss_pred HHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHc--C-CCEEEEeCCC-CCCC---------CCEEEECCHH
Confidence 334455678899999999999999999999999999999999 8 8999999642 1123 358888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++.++++++.. ..++||||++++.|+.+.+.++.. |-+..+.
T Consensus 158 el~~a~~~~~~---------------~~~lvEe~I~~~~E~sv~~~~~~~--G~~~~~~ 199 (352)
T TIGR01161 158 DLPQAAKELGD---------------RECIVEEFVPFERELSVIVARSAD--GETAFYP 199 (352)
T ss_pred HHHHHHHhcCC---------------CcEEEEecCCCCeEEEEEEEEcCC--CCEEEEC
Confidence 99988887420 268999999988999998887753 4444444
No 32
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.95 E-value=6.4e-08 Score=98.51 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=85.9
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
+.-+..-++...|++|+++|||+|++..+++.+++.++++.+ | ||+|+||... |+.|| ||.+. |.+
T Consensus 93 ~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~--g-~P~vlKp~~~-g~~g~---------Gv~~v~~~~ 159 (372)
T PRK06019 93 DALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADL--G-LPAVLKTRRG-GYDGK---------GQWVIRSAE 159 (372)
T ss_pred HHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHc--C-CcEEEEeCCC-CcCCC---------CeEEECCHH
Confidence 334455778889999999999999999999999999999999 8 8999999631 22234 57778 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++.++++.+. ...++||+|++.+.|+.+.+.+|.. |-+..+.
T Consensus 160 el~~a~~~~~---------------~~~~ivEe~I~~~~E~sv~~~~~~~--G~~~~~p 201 (372)
T PRK06019 160 DLEAAWALLG---------------SVPCILEEFVPFEREVSVIVARGRD--GEVVFYP 201 (372)
T ss_pred HHHHHHHhcC---------------CCCEEEEecCCCCeEEEEEEEECCC--CCEEEeC
Confidence 9999888751 1368999999988999998888864 5555554
No 33
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.94 E-value=1.4e-08 Score=106.55 Aligned_cols=172 Identities=19% Similarity=0.276 Sum_probs=112.9
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 26 RRLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 26 ~~~~L~e~~ak~lL~~~GIpvp~~~~--~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
-+..-++...|++|+++|||+|++.. +++.+|+.++++.+ | ||+|+||.. |+-|+ ||.+. |++
T Consensus 109 i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~i--g-yPvvvKp~~--ggGg~---------Gv~~v~~~~ 174 (472)
T PRK07178 109 IRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERI--G-YPVMLKATS--GGGGR---------GIRRCNSRE 174 (472)
T ss_pred HHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHc--C-CcEEEEeCC--CCCCC---------CceEeCCHH
Confidence 33456788999999999999988764 78999999999999 8 899999964 32233 58888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEE
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV 182 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~ 182 (422)
++.++++....... . ..+ ...+++|++++.++|+.+.+..|.. |.++.+. ..... ..+.++..+
T Consensus 175 eL~~a~~~~~~~~~---~--~~~--~~~v~iE~~i~~~~eiev~v~~d~~--G~~v~~~-er~~s---~~~~~~~~~--- 238 (472)
T PRK07178 175 ELEQNFPRVISEAT---K--AFG--SAEVFLEKCIVNPKHIEVQILADSH--GNVVHLF-ERDCS---IQRRNQKLI--- 238 (472)
T ss_pred HHHHHHHHHHHHHH---H--hcC--CCCEEEEEcCCCCeEEEEEEEEECC--CCEEEEE-ccccc---eEecCcceE---
Confidence 99999987654321 0 012 1469999999888999999999864 4555443 11111 111112121
Q ss_pred ecCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCCcEEeeeeeE
Q 014588 183 PIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLA 237 (422)
Q Consensus 183 ~i~p~~~l~~~-------~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~--~~~~~lEiNPl~ 237 (422)
...|...+++. .+.++++.||+.+.-. .+++.+ .+...+||||.+
T Consensus 239 e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~----------vEf~~d~~g~~y~iEiNpRl 292 (472)
T PRK07178 239 EIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGT----------VEFLLDADGEVYFMEMNTRV 292 (472)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeE----------EEEEEeCCCCEEEEEEeCCc
Confidence 12232234543 4556677777654210 134443 357799999986
No 34
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.94 E-value=8e-09 Score=105.36 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=85.2
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
+.-++.-++..+|++|+++|||+|++..+++.+++.++++.+ + ||+|+||....+ || ||.+. |.+
T Consensus 60 ~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~~~~~~--g-~PvVvKp~~~~~--gk---------GV~iv~~~~ 125 (379)
T PRK13790 60 QAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENC--E-LPVVVKKDGLAA--GK---------GVIIADTIE 125 (379)
T ss_pred HHHHHhCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHhc--C-CCEEEEeCCCCC--CC---------CEEEECCHH
Confidence 344566789999999999999999999999999999999999 8 899999975432 34 58888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++.+++++++... . ...++||||++ |.|+.+.+..|..
T Consensus 126 el~~a~~~~~~~~-------~----~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 126 AARSAIEIMYGDE-------E----EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred HHHHHHHHHHhcC-------C----CCeEEEEEccc-CceEEEEEEeeCC
Confidence 9999999876432 0 13699999998 6899999988854
No 35
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.93 E-value=3.1e-08 Score=97.69 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=73.7
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
....+++.+|++|+++|||||++..+++.. ...+.+ + ||+|+||.. ++.++ ||.+. |.+++.
T Consensus 94 ~l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~--~-~P~vVKP~~--ggss~---------Gv~~v~~~~eL~ 156 (296)
T PRK14569 94 VITMDKMISKEILMHHRMPTPMAKFLTDKL---VAEDEI--S-FPVAVKPSS--GGSSI---------ATFKVKSIQELK 156 (296)
T ss_pred HHHHCHHHHHHHHHHCCCCCCCeEEEchhh---hhHhhc--C-CCEEEEeCC--CCCCc---------CeEEcCCHHHHH
Confidence 355788999999999999999998876532 234677 8 899999963 33333 58888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f 153 (422)
+++++... ...++||+|++ |+|+.+++..|...
T Consensus 157 ~a~~~~~~--------------~~~~lvEefI~-G~E~tv~vl~~~~~ 189 (296)
T PRK14569 157 HAYEEASK--------------YGEVMIEQWVT-GKEITVAIVNDEVY 189 (296)
T ss_pred HHHHHHHh--------------cCCEEEEcccc-cEEEEEEEECCcCc
Confidence 98887531 13689999998 79999999877654
No 36
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.93 E-value=9.8e-09 Score=106.03 Aligned_cols=104 Identities=25% Similarity=0.310 Sum_probs=84.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
+..-++...|++|+++|||+|++..+++.+++.++++.+ + ||+|+||....+ + .||.+. |.+++.
T Consensus 98 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~P~VvKP~~~~g--s---------~Gv~~v~~~~el~ 163 (420)
T PRK00885 98 QLEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEK--G-APIVVKADGLAA--G---------KGVVVAMTLEEAK 163 (420)
T ss_pred HHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHc--C-CCEEEEeCCCCC--C---------CcEEEeCCHHHHH
Confidence 345688899999999999999999999999999999999 8 899999975332 2 368888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++++++++... .+.....++||||++ |.|+.+.+..|..
T Consensus 164 ~~~~~~~~~~~-------~~~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 164 AAVDDMLAGNK-------FGDAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred HHHHHHhhccc-------ccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 99999875321 122124799999999 7999999998753
No 37
>PRK08462 biotin carboxylase; Validated
Probab=98.92 E-value=2.3e-08 Score=104.10 Aligned_cols=114 Identities=22% Similarity=0.332 Sum_probs=85.7
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CH
Q 014588 25 LRRLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ 101 (422)
.-+..-+++..|++|+++|||+|++. .+.+.+|+..+++++ | ||+|+||....| | -||.+. |+
T Consensus 111 ~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~--g-~PvvvKP~~g~g--s---------~Gv~~v~~~ 176 (445)
T PRK08462 111 VMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEI--G-YPVILKAAAGGG--G---------RGMRVVEDE 176 (445)
T ss_pred HHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHc--C-CCEEEEeCCCCC--C---------CCeEEECCH
Confidence 33345688999999999999999864 678999999999999 8 899999964322 3 358888 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 102 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++.++++....... . ..+. ..++||+|+++++|+.+.+..|.. |-++.+|
T Consensus 177 ~eL~~~~~~~~~~~~--~---~~~~--~~vlvEe~i~g~~e~~v~v~~~~~--g~~~~~g 227 (445)
T PRK08462 177 SDLENLYLAAESEAL--S---AFGD--GTMYMEKFINNPRHIEVQILGDKH--GNVIHVG 227 (445)
T ss_pred HHHHHHHHHHHHHHH--h---ccCC--CcEEEeccCCCCeEEEEEEEECCC--CCEEEEE
Confidence 999998876543210 0 0111 369999999878899999988853 5666665
No 38
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.90 E-value=1.2e-07 Score=96.91 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=81.7
Q ss_pred cCCCHHHHHHHH-HHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL-~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..-+++..|++| +++|||+|++..++|.+|+.++++.+ | ||+|+||....+ | .||.+. |.+++.
T Consensus 110 ~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~--g-~P~VvKP~~g~~--s---------~Gv~~v~~~~el~ 175 (395)
T PRK09288 110 LTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEI--G-YPCVVKPVMSSS--G---------KGQSVVRSPEDIE 175 (395)
T ss_pred HHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhc--C-CCEEEEeCCCcC--C---------CCeEEECCHHHHH
Confidence 345677788988 47999999999999999999999999 8 899999964322 3 358888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++++.+..... +. ...++||||++.+.|+.+.+.+|..
T Consensus 176 ~~~~~~~~~~~--------~~-~~~~lvEefi~~~~E~sv~~~~~~~ 213 (395)
T PRK09288 176 KAWEYAQEGGR--------GG-AGRVIVEEFIDFDYEITLLTVRAVD 213 (395)
T ss_pred HHHHHHHhhcc--------cc-CCCEEEEEecCCCEEEEEEEEEcCC
Confidence 99998764320 00 1479999999988999999888865
No 39
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.88 E-value=1.2e-07 Score=101.72 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=84.2
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
++.-+++..|++|+++|||+|++..+++.+++.++.+.+ | ||+|+||..- |+.|+ |+.+. |.+++.
T Consensus 117 ~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~i--g-~P~VvKP~~g-gs~g~---------Gv~~v~~~~eL~ 183 (577)
T PLN02948 117 RIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLF--G-YPLMLKSRRL-AYDGR---------GNAVAKTEEDLS 183 (577)
T ss_pred HHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhc--C-CcEEEEeCCC-CCCCC---------CeEEECCHHHHH
Confidence 344588999999999999999999999999999999999 8 8999999631 11233 46677 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeee
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~ 160 (422)
++++.+.+.. ..++||+|+++.+|+++.+.+|.. |.+..+
T Consensus 184 ~a~~~~~~~~-------------~~vlvEefI~~~~EisV~v~r~~~--G~i~~~ 223 (577)
T PLN02948 184 SAVAALGGFE-------------RGLYAEKWAPFVKELAVMVARSRD--GSTRCY 223 (577)
T ss_pred HHHHHhhCCC-------------CcEEEEecCCCCeEEEEEEEECCC--CCEEEe
Confidence 9988864321 368999999977999999998753 444443
No 40
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.85 E-value=6.8e-08 Score=110.99 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=87.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCC-eeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~-~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..-+++.+|++|+++|||+++ +.++++.+|+.++++++ | ||+|+||.... -|+ ||.+. |.+|+.
T Consensus 111 ~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~i--g-yPvVVKP~~gg--GG~---------GV~iv~~~eEL~ 176 (1201)
T TIGR02712 111 KFGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEI--G-YPVMLKSTAGG--GGI---------GMQKCDSAAELA 176 (1201)
T ss_pred HhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhc--C-CeEEEEECCCC--CCC---------CEEEECCHHHHH
Confidence 456789999999999999866 66789999999999999 8 89999997532 233 58888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++.+..... . ..+. .+++||+|+++++|+.+.+..|.. |.++.++
T Consensus 177 ~a~~~~~~~~~---~--~f~~--~~vlVEefI~g~~eveV~v~~Dg~--g~vv~lg 223 (1201)
T TIGR02712 177 EAFETVKRLGE---S--FFGD--AGVFLERFVENARHVEVQIFGDGK--GKVVALG 223 (1201)
T ss_pred HHHHHHHHHHH---H--hcCC--CcEEEEecCCCCEEEEEEEEECCC--CeEEEee
Confidence 99988754320 0 0121 479999999988999999999875 5667664
No 41
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.84 E-value=5.3e-08 Score=101.37 Aligned_cols=115 Identities=13% Similarity=0.184 Sum_probs=86.4
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCe--eeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-C
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K 100 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~--~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~ 100 (422)
+.-+..-+++..|++|+++|||+|++ ..+++.+|+.++++.+ + ||+|+||....+ | -||.+. |
T Consensus 108 ~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~--~-~P~VvKP~~g~g--s---------~Gv~iv~~ 173 (450)
T PRK06111 108 DIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQI--G-YPVMLKASAGGG--G---------IGMQLVET 173 (450)
T ss_pred HHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHh--C-CCEEEEeCCCCC--C---------ceEEEECC
Confidence 34445678999999999999999986 5568999999999999 8 899999975332 3 368888 9
Q ss_pred HHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 101 ~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
.+++.++++....... . ..+. ..++||+|+++..|+.+.+..|.. |.++.++
T Consensus 174 ~~el~~a~~~~~~~~~---~--~~~~--~~~lvEe~i~g~~e~~v~v~~~~~--g~~~~~~ 225 (450)
T PRK06111 174 EQELTKAFESNKKRAA---N--FFGN--GEMYIEKYIEDPRHIEIQLLADTH--GNTVYLW 225 (450)
T ss_pred HHHHHHHHHHHHHHHH---H--hcCC--CcEEEEcccCCCcEEEEEEEEcCC--CCEEEEE
Confidence 9999999988653210 0 0111 369999999977898898888864 5555554
No 42
>PRK05586 biotin carboxylase; Validated
Probab=98.83 E-value=2.1e-07 Score=97.04 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=87.9
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCe--eeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-C
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K 100 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~--~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~ 100 (422)
++-...-+++..|++|+++|||+|++ ..+.+.+|+.++++.+ | ||+|+||.. ++.|+ ||.+. |
T Consensus 108 ~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~i--g-yPvvvKP~~--gggg~---------Gv~~v~~ 173 (447)
T PRK05586 108 ETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEI--G-YPVMVKASA--GGGGR---------GIRIVRS 173 (447)
T ss_pred HHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHc--C-CCEEEEECC--CCCCC---------eeEEECC
Confidence 33345578899999999999999998 4678999999999999 8 899999964 33233 58888 9
Q ss_pred HHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 101 ~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++++++++...... . ..+. ..++||+++++..|+.+.+.+|.. |.++.++
T Consensus 174 ~~el~~a~~~~~~~~~--~---~~~~--~~vivEe~i~g~~ei~v~v~~d~~--G~~~~~~ 225 (447)
T PRK05586 174 EEELIKAFNTAKSEAK--A---AFGD--DSMYIEKFIENPKHIEFQILGDNY--GNVVHLG 225 (447)
T ss_pred HHHHHHHHHHHHHHHH--H---hcCC--CeEEEEecCCCCeEEEEEEEECCC--CCEEEEe
Confidence 9999999887654321 0 0121 369999999977899999998864 6777665
No 43
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.83 E-value=3.2e-08 Score=102.17 Aligned_cols=102 Identities=26% Similarity=0.333 Sum_probs=83.6
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCe-EEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~P-vVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..-+++..|++|+++|||+|++..+++.+|+.++++.+ + || +|+||....+ | .||.+. |.+++.
T Consensus 101 ~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~--g-~P~~VvKp~~~~g--g---------~Gv~~v~~~~el~ 166 (423)
T TIGR00877 101 LEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEK--G-APAIVVKADGLAA--G---------KGVIVAKTNEEAI 166 (423)
T ss_pred HHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhc--C-CCeEEEEECCCCC--C---------CCEEEECCHHHHH
Confidence 34588899999999999999999999999999999999 8 89 9999975332 2 368888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+++++++.... |.....++||||++ |.|+++.+..|..
T Consensus 167 ~~~~~~~~~~~--------g~~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 167 KAVEEILEQKF--------GDAGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred HHHHHHHHHhc--------CCCCCeEEEEECcc-CceEEEEEEEcCC
Confidence 99998875421 21124799999999 6899999998853
No 44
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.80 E-value=1.4e-07 Score=88.03 Aligned_cols=87 Identities=24% Similarity=0.301 Sum_probs=64.5
Q ss_pred HHHHcCCCCCCeeeeCCHHHH----HHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHh
Q 014588 38 LMAKYGINVPKGLAVASVDEV----KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML 112 (422)
Q Consensus 38 lL~~~GIpvp~~~~~~s~~ea----~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~ 112 (422)
||+.+|||||++.++...+.. ......+ + ||+++||.. +|.+ =||... |.+++.++.++.+
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l--~-~P~~VKP~~--~GsS---------~Gi~~v~~~~el~~ai~~~~ 66 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDL--G-FPLFVKPAS--EGSS---------IGISKVHNEEELEEAIEKAF 66 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHH--S-SSEEEEESS--TSTT---------TTEEEESSHHHHHHHHHHHT
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhc--C-CCEEEEECC--CCcc---------EEEEEcCCHHHHHHHHHHHh
Confidence 689999999999999765443 3456788 8 899999963 3333 357788 9999999998876
Q ss_pred cccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 113 ~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
.. -+.++||||++ |+|+.+|+..+..
T Consensus 67 ~~-------------~~~vlVEefI~-G~E~tv~vl~~~~ 92 (203)
T PF07478_consen 67 KY-------------DDDVLVEEFIS-GREFTVGVLGNGE 92 (203)
T ss_dssp TT-------------HSEEEEEE--S-SEEEEEEEEESSS
T ss_pred hh-------------cceEEEEeeec-ccceEEEEEecCC
Confidence 32 24899999996 9999999998543
No 45
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.80 E-value=8e-08 Score=109.75 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
.-+.+..+++|+++|||+|++..+++.+|+.++++.+ | ||+++||....| | -||.+. |.++++++
T Consensus 667 ~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~i--g-yPvIVKP~~~~G--g---------~gv~iv~~~eeL~~~ 732 (1050)
T TIGR01369 667 AEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEI--G-YPVLVRPSYVLG--G---------RAMEIVYNEEELRRY 732 (1050)
T ss_pred HCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhc--C-CCEEEEECCCCC--C---------CCeEEECCHHHHHHH
Confidence 3567778999999999999999999999999999999 8 899999964333 2 257788 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++..... + ...++||+|+++|.|+.+.+..|. |-++..+
T Consensus 733 l~~a~~~s-------~----~~~vlVeefI~~G~E~~Vd~l~d~---g~v~i~~ 772 (1050)
T TIGR01369 733 LEEAVEVS-------P----EHPVLIDKYLEDAVEVDVDAVSDG---EEVLIPG 772 (1050)
T ss_pred HHHHHHhC-------C----CCCEEEeecCCCCeEEEEEEEEeC---CEEEEEE
Confidence 99876432 1 136999999998999999999885 4444443
No 46
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.80 E-value=9.3e-08 Score=100.47 Aligned_cols=175 Identities=21% Similarity=0.298 Sum_probs=111.1
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeee-e--CCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKGLA-V--ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~~~-~--~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~- 99 (422)
++-+..-++...|++|.++|||+|++.. + .+.+|+.++++.+ | ||+++||.. |+-|+ ||.+.
T Consensus 107 ~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~i--g-yPvvvKP~~--ggGg~---------Gv~iv~ 172 (478)
T PRK08463 107 EVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKI--G-YPVILKASG--GGGGR---------GIRVVH 172 (478)
T ss_pred HHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHh--C-CCEEEEeCC--CCCCC---------ceEEeC
Confidence 3444556788999999999999988543 2 5789999999999 8 899999964 22233 58888
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeE
Q 014588 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMI 179 (422)
Q Consensus 100 ~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~ 179 (422)
|++++.++++....... . ..+. ..++||+|+.+++|+.+.+..|.. |.++.++... .. . .+.++..+
T Consensus 173 ~~~eL~~a~~~~~~~a~--~---~~~~--~~vlvEefI~~~~~iev~v~~d~~--g~v~~~~er~-~s--~-~~~~~~~i 239 (478)
T PRK08463 173 KEEDLENAFESCKREAL--A---YFNN--DEVFMEKYVVNPRHIEFQILGDNY--GNIIHLCERD-CS--I-QRRHQKVI 239 (478)
T ss_pred CHHHHHHHHHHHHHHHH--H---hcCC--CcEEEEecCCCCeEEEEEEEEcCC--CCEEEEeccC-Cc--c-ccccCceE
Confidence 99999998886532210 0 0121 479999999877888888888863 5666555111 11 1 11122222
Q ss_pred EEEecCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCCcEEeeeeeEE
Q 014588 180 VKVPIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE 238 (422)
Q Consensus 180 ~~~~i~p~~~l~~~-------~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~--~~~~~lEiNPl~v 238 (422)
...|...+++. .+.++++.+|+.+.- . .+++.+ .+...+||||.+-
T Consensus 240 ---e~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~--~--------vEf~~~~~~~~y~iEiN~R~~ 294 (478)
T PRK08463 240 ---EIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAG--T--------IEFLLDDYNRFYFMEMNTRIQ 294 (478)
T ss_pred ---EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCce--e--------EEEEEcCCCCEEEEEEECCcC
Confidence 22332234543 334556667765421 0 134443 3577899999763
No 47
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=98.74 E-value=5.6e-08 Score=100.26 Aligned_cols=133 Identities=28% Similarity=0.325 Sum_probs=104.1
Q ss_pred chhhhhhhhhccccccchhHHhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccC
Q 014588 2 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAG 81 (422)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g 81 (422)
+.||-+.|.|--+-+.+-. .|.-++.-++..+|.+|.+|||||..|..+++++++..+.+.. +..++|+|++.+..
T Consensus 81 ~~Gl~~~l~~~gi~~FGPs--~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~--~~~~~ViKAdGLAA 156 (788)
T KOG0237|consen 81 VAGLADVLRSAGIPCFGPS--KQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSA--TDKALVIKADGLAA 156 (788)
T ss_pred hhhhhhhhhccCcceeCch--HHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhC--CCcceEEeeccccc
Confidence 4566677766665555544 3444567788899999999999999999999999999999887 64689999998864
Q ss_pred CCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCce
Q 014588 82 GRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI 157 (422)
Q Consensus 82 ~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpv 157 (422)
|| ||.+. |.+|+-+|.+.|+.... .|..-..|+|||+++ |.|+.+=.+.|....-|+
T Consensus 157 --GK---------GViv~~~~~EA~eAv~sIl~~~~-------fg~AG~tvViEE~LE-GeEvS~laftDG~s~~~m 214 (788)
T KOG0237|consen 157 --GK---------GVIVAKSKEEAFEAVDSILVKKV-------FGSAGKTVVIEELLE-GEEVSFLAFTDGYSVRPL 214 (788)
T ss_pred --CC---------ceEeeccHHHHHHHHHHHHhhhh-------hccccceEehhhhcC-cceEEEEEEecCcccccC
Confidence 45 59999 99999999999997752 344456899999999 889987777775432343
No 48
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.74 E-value=4.3e-07 Score=94.44 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=77.4
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHhH--hCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~--~~s~~ea~~~a~~--l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ 101 (422)
....++..+|+++++.|||+|++.. +.+.+++...++. + | ||+||||.. |+.|+ |+.+. +.
T Consensus 138 ai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~~~~~~~~I--G-yPvVVKP~~--GGSS~---------GV~~Vkn~ 203 (493)
T PRK06524 138 HRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGL--G-DDLVVQTPY--GDSGS---------TTFFVRGQ 203 (493)
T ss_pred HHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHhccC--C-CcEEEEECC--CCCCc---------CEEEeCCH
Confidence 3567889999999999999999988 4677777777765 8 8 899999973 44454 57788 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 102 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+++.++++++... ..++||+++. +.|+.|.+.+|..
T Consensus 204 eELe~a~~~~~~~--------------~~viVEe~I~-GrEitVev~vd~d 239 (493)
T PRK06524 204 RDWDKYAGGIVGQ--------------PEIKVMKRIR-NVEVCIEACVTRH 239 (493)
T ss_pred HHHHHHHHHhcCC--------------CCEEEEeccC-cEEEEEEEEEeCC
Confidence 9999887776421 3689999997 8999998888853
No 49
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.73 E-value=5.3e-07 Score=89.62 Aligned_cols=127 Identities=20% Similarity=0.193 Sum_probs=92.3
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEECCHHHH
Q 014588 25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEV 104 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~~~ee~ 104 (422)
.-+..-+...=|++|++.|||||+|+.+.+.+|+..+++.+ | +|.|+|..- .|+.|| |-.++.+++++
T Consensus 93 ~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~--g-~p~VlKtr~-gGYDGk--------GQ~~i~~~~~~ 160 (375)
T COG0026 93 ALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADL--G-FPAVLKTRR-GGYDGK--------GQWRIRSDADL 160 (375)
T ss_pred HHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHc--C-CceEEEecc-ccccCC--------CeEEeeCcccc
Confidence 33344556677999999999999999999999999999999 8 899999963 577888 44444466666
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEec
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i 184 (422)
...+...... ...++|+|++..+|+++-+.|+.. |-+..+= -+|.+-+ +.+++..+
T Consensus 161 ~~~~~~~~~~--------------~~~vlE~fV~F~~EiSvi~aR~~~--G~~~~yP-----~~eN~h~---~gIl~~si 216 (375)
T COG0026 161 ELRAAGLAEG--------------GVPVLEEFVPFEREISVIVARSND--GEVAFYP-----VAENVHR---NGILRTSI 216 (375)
T ss_pred hhhHhhhhcc--------------CceeEEeecccceEEEEEEEEcCC--CCEEEec-----ccceeee---cCEEEEEE
Confidence 6544443211 123899999999999888888864 6666665 3566543 56776656
Q ss_pred CCC
Q 014588 185 DVF 187 (422)
Q Consensus 185 ~p~ 187 (422)
.|.
T Consensus 217 aPa 219 (375)
T COG0026 217 APA 219 (375)
T ss_pred ecC
Confidence 653
No 50
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.72 E-value=3.9e-07 Score=101.73 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=77.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCC------HH-HHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVAS------VD-EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s------~~-ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~- 99 (422)
...++..+|++|+.+|||||+|..++. .+ ++.++.+.+ + ||+++||.. +|.+ -||.+.
T Consensus 565 l~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~l--g-~P~iVKP~~--~GsS---------~Gv~~v~ 630 (809)
T PRK14573 565 IAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAF--S-FPMFVKTAH--LGSS---------IGVFEVH 630 (809)
T ss_pred HHcCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHHHHHHhc--C-CCEEEeeCC--CCCC---------CCEEEEC
Confidence 457889999999999999999988863 22 234566788 8 899999964 3323 468888
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 100 ~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
|.+|+.+++++.+... ..++|||++.+++|+.+++..|..
T Consensus 631 ~~~el~~a~~~a~~~~-------------~~vlVEe~i~~grEi~v~vl~~~~ 670 (809)
T PRK14573 631 NVEELRDKISEAFLYD-------------TDVFVEESRLGSREIEVSCLGDGS 670 (809)
T ss_pred CHHHHHHHHHHHHhcC-------------CcEEEEeccCCCEEEEEEEEeCCC
Confidence 9999999999876321 369999999878999999998854
No 51
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.72 E-value=1.5e-07 Score=85.12 Aligned_cols=105 Identities=27% Similarity=0.300 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~ 108 (422)
-+++..++++.++|||+|++..+++.+++.+..+.+ + +|+|+||....+ + .||.+. |++++.+.+
T Consensus 3 ~dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~--~-~p~vvKp~~g~g--s---------~gv~~~~~~~~l~~~~ 68 (184)
T PF13535_consen 3 NDKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDL--G-FPFVVKPVDGSG--S---------RGVFIVHSPEELEAAL 68 (184)
T ss_dssp CCHHHHHHHHHHHTS----EEEECSHHHHHHHHHHS--S-SSEEEEESS-ST--T---------TT-EEESSHHHHHHHH
T ss_pred CCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHc--C-CCEEEEcCcccc--C---------CCEEEeCCHHHHHHHH
Confidence 467889999999999999999999999999999999 8 899999975332 2 358788 999999999
Q ss_pred HHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 109 ~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++..... .....+++|+|++ |.|+.+-+..+ . |.++.++
T Consensus 69 ~~~~~~~~---------~~~~~~ivqe~i~-g~e~~~~~~~~--~-G~~~~~~ 108 (184)
T PF13535_consen 69 AEIREDSP---------LGNGPVIVQEYIP-GDEYSVDGVVD--D-GEVVFAG 108 (184)
T ss_dssp HHHHHHHS----------HSSSEEEEE----SEEEEEEEEEE--T-TEEEEEE
T ss_pred HHHHHhcc---------cCCccEEEEEeee-eeeEEEEEEEE--c-ceEEEEE
Confidence 98865530 1125899999999 79998888877 2 5555544
No 52
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.71 E-value=1.5e-07 Score=92.96 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=76.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-++..++++|+++|||+|++.++.+.+++.++.+.+ +.+|+|+||.. |+.| -||.+. +.+++..
T Consensus 96 ~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~--~~~P~VvKP~~--g~~g---------~GV~~v~~~~~~~~ 162 (300)
T PRK10446 96 RARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMV--GGAPLVVKLVE--GTQG---------IGVVLAETRQAAES 162 (300)
T ss_pred hhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHh--CCCCEEEEECC--CCCc---------ccEEEEcCHHHHHH
Confidence 34678889999999999999999999999888888776 33799999964 3323 368888 8888777
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecC--CCceEEEEEEecCCC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS--LVNEMYFAIMLDRKT 153 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~--~g~El~vgv~~D~~f 153 (422)
+.+.+... + ..++||||++ .+.|+.+.+..+..+
T Consensus 163 ~~~~~~~~----------~---~~~lvQe~I~~~~g~d~rv~vig~~~~ 198 (300)
T PRK10446 163 VIDAFRGL----------N---AHILVQEYIKEAQGCDIRCLVVGDEVV 198 (300)
T ss_pred HHHHHHhc----------C---CCEEEEeeeccCCCceEEEEEECCEEE
Confidence 66654321 1 3699999995 589999998765433
No 53
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.71 E-value=1.9e-07 Score=106.79 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=85.9
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee 103 (422)
+..-++..+|+++.++|||+|++. .+.+.+|+.++++.+ | ||+++||.. |+-| -||++. ++++
T Consensus 115 ~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~i--G-yPvVVKP~~--GgGG---------rGv~vV~~~eE 180 (1146)
T PRK12999 115 RLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEI--G-YPIMLKASA--GGGG---------RGMRIVRSEEE 180 (1146)
T ss_pred HHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHh--C-CCEEEEECC--CCCC---------CCeEEeCCHHH
Confidence 344678899999999999998765 589999999999999 8 899999964 2223 358888 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 104 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++++++...... . ..|. ..++||+|+++.+|+.+.+..|.. |.++.+.
T Consensus 181 L~~a~~~a~~ea~---~--~fg~--~~vlVEefI~g~~~ieVqvl~D~~--G~vv~l~ 229 (1146)
T PRK12999 181 LEEAFERAKREAK---A--AFGN--DEVYLEKYVENPRHIEVQILGDKH--GNVVHLY 229 (1146)
T ss_pred HHHHHHHHHHHHH---h--hcCC--CcEEEecCCCCCeEEEEEEEEECC--CCEEEEE
Confidence 9999988654321 0 1122 479999999977888888888854 5666553
No 54
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.70 E-value=9.6e-07 Score=87.42 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=73.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeC-CHHHHH-----HHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-C
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVA-SVDEVK-----KAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K 100 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~-s~~ea~-----~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~ 100 (422)
...+++..|++|+++|||+|++..++ +.++.. .+.+.+ + ||+|+||.... .+ -||.+. |
T Consensus 102 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~--~-~P~vvKP~~~~--~s---------~Gv~~v~~ 167 (315)
T TIGR01205 102 LSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPL--G-FPVIVKPAREG--SS---------VGVSKVKS 167 (315)
T ss_pred HHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHHHHhc--C-CCEEEEeCCCC--Cc---------cCEEEECC
Confidence 44688899999999999999999887 544322 334577 8 89999996422 22 357888 9
Q ss_pred HHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 101 ~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
.++++++++...... ..++||+|++ |.|+.+++..+.
T Consensus 168 ~~el~~~~~~~~~~~-------------~~~lvEe~i~-G~e~~v~vi~~~ 204 (315)
T TIGR01205 168 EEELQAALDEAFEYD-------------EEVLVEQFIK-GRELEVSILGNE 204 (315)
T ss_pred HHHHHHHHHHHHhcC-------------CcEEEEcCCC-CEEEEEEEECCC
Confidence 999999888765321 3699999998 899999999854
No 55
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.70 E-value=2.4e-07 Score=106.20 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
.-+.+..+++|+++|||+|++..+++.+|+.++++.+ | ||||+||....| | .||.+. |.+++.++
T Consensus 667 ~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~i--g-yPvvVKP~~~~G--g---------~Gv~iv~~~eeL~~~ 732 (1066)
T PRK05294 667 AEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEI--G-YPVLVRPSYVLG--G---------RAMEIVYDEEELERY 732 (1066)
T ss_pred hCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhc--C-CCeEEEeCCCCC--C---------CcEEEECCHHHHHHH
Confidence 3567778999999999999999999999999999999 8 899999965332 2 357888 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+++..... . ...++||+|+++..|+.+.+.+|..
T Consensus 733 ~~~a~~~s-------~----~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 733 MREAVKVS-------P----DHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred HHHHHhhC-------C----CCcEEEEecCCCCEEEEEEEEecCC
Confidence 98876432 1 1369999999955599999998754
No 56
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=98.70 E-value=2.2e-07 Score=95.96 Aligned_cols=109 Identities=26% Similarity=0.344 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~--~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
=++..+|+++++.|+|++++.- +.+.+|+.+.++++ | |||+|||.. |+-| -|++++ +.+++.+
T Consensus 114 gdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~i--G-yPVivKa~~--GgGg---------~G~r~v~~~~el~~ 179 (449)
T COG0439 114 GDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEI--G-YPVIVKAAA--GGGG---------RGMRVVRNEEELEA 179 (449)
T ss_pred hhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHc--C-CCEEEEECC--CCCc---------ccEEEECCHHHHHH
Confidence 3678899999999999999872 56789999999999 9 999999965 3223 369999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++....+... ...|. ..+++|+++...+-+-+.+.-|.. |.+|=.+
T Consensus 180 a~~~~~~ea~-----~~fg~--~~v~iEk~i~~~rhievqv~gD~~--g~~i~l~ 225 (449)
T COG0439 180 AFEAARGEAE-----AAFGN--PRVYLEKFIEGPRHIEVQVLGDGH--GNVIHLG 225 (449)
T ss_pred HHHHHHHHHH-----HhcCC--CcEEeeeeccCCceEEEEEEEcCc--ccEEEEE
Confidence 9999886652 12243 469999999866666677887875 4555544
No 57
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.69 E-value=2.1e-07 Score=106.41 Aligned_cols=96 Identities=14% Similarity=0.200 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
.-+.+.-+++|+++|||+|++..+++.+|+.++++.+ | ||+++||....| | .||.+. |.++++++
T Consensus 668 ~~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~i--g-yPvVVKP~~~~G--g---------~gv~iv~~~eeL~~~ 733 (1068)
T PRK12815 668 LEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRI--G-YPVLIRPSYVIG--G---------QGMAVVYDEPALEAY 733 (1068)
T ss_pred HcCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhc--C-CCEEEEeCCCCC--C---------CCEEEECCHHHHHHH
Confidence 4567778999999999999999999999999999999 8 899999965332 2 358888 99999998
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+++.... ...++||+|++ |.|+.+.+..|..
T Consensus 734 l~~~~s~-------------~~~vlIeefI~-G~E~~Vd~i~dg~ 764 (1068)
T PRK12815 734 LAENASQ-------------LYPILIDQFID-GKEYEVDAISDGE 764 (1068)
T ss_pred HHHhhcC-------------CCCEEEEEeec-CceEEEEEEEcCC
Confidence 8886211 14799999997 7899999998854
No 58
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.69 E-value=1.8e-07 Score=95.18 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=79.5
Q ss_pred cCCCHHHHHHHH-HHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL-~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
...+++..|+++ +++|||+|++..+++.+++.++++.+ | ||+|+||.... .| .||.+. |.+++.
T Consensus 97 ~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~VvKP~~g~--~s---------~gv~~v~~~~el~ 162 (380)
T TIGR01142 97 LTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKI--G-YPCVVKPVMSS--SG---------KGQSVVRGPEDIE 162 (380)
T ss_pred HhhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHc--C-CCEEEEECCCc--CC---------CCeEEECCHHHHH
Confidence 345777788875 89999999999999999999999999 8 89999996422 23 368888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++++.+..... . .-..++||||++++.|+.+.+.++.
T Consensus 163 ~~~~~~~~~~~--------~-~~~~~ivEe~i~~~~E~sv~~~~~~ 199 (380)
T TIGR01142 163 KAWEYAQEGAR--------G-GAGRVIVEEFIDFDYEITLLTVRHV 199 (380)
T ss_pred HHHHHHHhhcc--------C-CCCCEEEEEecCCCEEEEEEEEEcC
Confidence 99998754320 0 0246999999997789988877654
No 59
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.68 E-value=1.1e-07 Score=99.53 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=82.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
..-+++.+|++|+++|||+|++. .+++.+|+.++++++ | ||||+||.. |+-|+ ||.+. |++++
T Consensus 115 ~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~i--g-yPvvvKp~~--gggg~---------Gv~~v~~~~eL 180 (467)
T PRK12833 115 TMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARI--G-YPLMIKAAA--GGGGR---------GIRVAHDAAQL 180 (467)
T ss_pred HhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHh--C-CCEEEEECC--CCCCC---------eEEEECCHHHH
Confidence 44688999999999999999885 889999999999999 8 899999964 33233 68888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
.++++....... . ..+ ...++||+|+++++|+.+.+..|..
T Consensus 181 ~~a~~~~~~~~~---~--~~~--~~~vlvEefi~~~~ei~v~v~~dg~ 221 (467)
T PRK12833 181 AAELPLAQREAQ---A--AFG--DGGVYLERFIARARHIEVQILGDGE 221 (467)
T ss_pred HHHHHHHHHHHH---H--hcC--CCcEEEEecCCCCEEEEEEEEeCCC
Confidence 999887643321 0 112 1469999999988999999998865
No 60
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.65 E-value=1.8e-07 Score=102.93 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEE-C-CHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVED 106 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l-~-~~ee~~~ 106 (422)
.-++..+|++|+++|||+|++..+.+.+++.++++++ | ||+|+||.. |+.| .||.+ . |++++.+
T Consensus 212 ~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~~~a~~i--G-~PvVVKP~~--G~~G---------~GV~~~v~~~~el~~ 277 (727)
T PRK14016 212 ACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEI--G-YPVVVKPLD--GNHG---------RGVTVNITTREEIEA 277 (727)
T ss_pred hCCHHHHHHHHHHCCcCCCCeeEeCCHHHHHHHHHHc--C-CCEEEEECC--CCCC---------CceEEecCCHHHHHH
Confidence 4678899999999999999999999999999999999 8 899999964 3223 46888 4 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
+++.+.... ..++||+|++ |.|+.+.+..+
T Consensus 278 a~~~a~~~~-------------~~viVEe~I~-G~d~Rv~Vvgg 307 (727)
T PRK14016 278 AYAVASKES-------------SDVIVERYIP-GKDHRLLVVGG 307 (727)
T ss_pred HHHHHHHhC-------------CeEEEEEecC-CceEEEEEECC
Confidence 998775321 4799999998 88998877544
No 61
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.64 E-value=1.7e-07 Score=105.00 Aligned_cols=94 Identities=21% Similarity=0.278 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC--CHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVED 106 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~--~~ee~~~ 106 (422)
.-++..+|++|+++|||+|++..+++.+++.++++.+ | ||+|+||... +.| .||.++ |++++.+
T Consensus 211 a~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~i--g-~PvVVKP~~g--~~G---------~GV~l~v~s~~el~~ 276 (864)
T TIGR02068 211 ACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDL--G-YPVVIKPYDG--NHG---------RGVTINILTRDEIES 276 (864)
T ss_pred HcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHc--C-CCEEEEECCC--CCc---------cCEEEEeCCHHHHHH
Confidence 3678899999999999999999999999999999999 8 8999999753 223 468884 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
+++.+... ...++||+|++ |.|+.+.+..+
T Consensus 277 a~~~a~~~-------------~~~vlVEefI~-G~e~rvlVv~~ 306 (864)
T TIGR02068 277 AYEAAVEE-------------SSGVIVERFIT-GRDHRLLVVGG 306 (864)
T ss_pred HHHHHHhh-------------CCcEEEEEecc-CCEEEEEEECC
Confidence 99887532 14799999998 79998877543
No 62
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.61 E-value=2.6e-07 Score=93.13 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=75.6
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCeeeeC------CHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC
Q 014588 26 RRLNIHEYQGAELMAKYGINVPKGLAVA------SVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV 99 (422)
Q Consensus 26 ~~~~L~e~~ak~lL~~~GIpvp~~~~~~------s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~ 99 (422)
-.+..+++.+|++|+++|||+|++..++ +.+++....+.+ + ||+|+||.. +|.+ -||.+.
T Consensus 125 ~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l--~-~PvvVKP~~--ggsS---------~GV~~v 190 (347)
T PRK14572 125 SALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLLKLESL--G-FPQFLKPVE--GGSS---------VSTYKI 190 (347)
T ss_pred HHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHHHHHhc--C-CCEEEecCC--CCCC---------CCEEEE
Confidence 3455788999999999999999998874 344554556678 8 899999964 3323 368888
Q ss_pred -CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 100 -KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 100 -~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
|.++++.+++.++... ..++||||++ |+|+.+++..+
T Consensus 191 ~~~~el~~a~~~~~~~~-------------~~vlVEefI~-G~E~sv~vi~~ 228 (347)
T PRK14572 191 TNAEQLMTLLALIFESD-------------SKVMSQSFLS-GTEVSCGVLER 228 (347)
T ss_pred CCHHHHHHHHHHHHhcC-------------CCEEEEcCcc-cEEEEEEEEeC
Confidence 9999999998875321 3689999998 79999999864
No 63
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.59 E-value=1.8e-06 Score=85.14 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=70.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
...++...|++|+. |||+|++..+++.. ..+.+ + ||+|+||.. ++.++ ||.+. |.+++.+
T Consensus 92 i~~DK~~~k~~l~~-~ip~p~~~~~~~~~----~~~~l--~-~P~vvKP~~--g~~s~---------Gv~~v~~~~el~~ 152 (299)
T PRK14571 92 ICFDKLLTYRFLKG-TVEIPDFVEIKEFM----KTSPL--G-YPCVVKPRR--EGSSI---------GVFICESDEEFQH 152 (299)
T ss_pred HHcCHHHHHHHHhc-CCCCCCEEEEechh----hhhhc--C-CCEEEecCC--CCCcC---------CEEEECCHHHHHH
Confidence 45678889999984 89999999886543 23567 8 899999964 22233 58888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++++.+... ..++||||++ |+|+.+++..+.
T Consensus 153 ~~~~~~~~~-------------~~vlVEeyI~-G~E~sv~vl~~~ 183 (299)
T PRK14571 153 ALKEDLPRY-------------GSVIVQEYIP-GREMTVSILETE 183 (299)
T ss_pred HHHHHHhhC-------------CcEEEEcccc-ceEEEEEEEcCC
Confidence 888765321 3699999998 899999999875
No 64
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.58 E-value=1e-06 Score=100.69 Aligned_cols=111 Identities=18% Similarity=0.282 Sum_probs=86.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee 103 (422)
++.-++..+|++++++|||+|++. .+.+.+|+.++++.+ | ||+++||.. ||-| .|+++. +.+|
T Consensus 111 ~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~i--G-yPvIVKP~~--GGGG---------rG~riV~~~eE 176 (1143)
T TIGR01235 111 DQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAI--G-YPVIIKASW--GGGG---------RGMRVVRSEAD 176 (1143)
T ss_pred HHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHc--C-CCEEEEECC--CCCC---------CccEEeCCHHH
Confidence 345688999999999999999875 578999999999999 8 899999954 3323 358888 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeee
Q 014588 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (422)
Q Consensus 104 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~ 160 (422)
+.+++++...... . ..|. ..++||+++++++|+.+.+..|.. |.++.+
T Consensus 177 L~~a~~~a~~ea~---~--~fg~--~~vlIEefI~g~reIeVqVlgD~~--G~vv~l 224 (1143)
T TIGR01235 177 VADAFQRAKSEAK---A--AFGN--DEVYVEKLIERPRHIEVQLLGDKH--GNVVHL 224 (1143)
T ss_pred HHHHHHHHHHHHH---H--hcCC--CcEEEEEcCCCCeEEEEEEEEeCC--CCEEEE
Confidence 9999988754321 0 1122 479999999888999999998864 565543
No 65
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.57 E-value=4.2e-07 Score=98.95 Aligned_cols=94 Identities=24% Similarity=0.298 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC----CHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE 105 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~----~~ee~~ 105 (422)
-++..+|++|+++|||||++..+++.+++.++...+ +.+|+||||.. ++.|+ ||.+. +.+++.
T Consensus 474 ~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~--~g~PVVVKP~~--g~~G~---------GVsi~~~~~~~eel~ 540 (737)
T TIGR01435 474 ENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLF--ENKAIVVKPKS--TNYGL---------GITIFKNGFTLEDFQ 540 (737)
T ss_pred cCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHh--cCCCEEEeeCC--CCCcC---------CeEEecCcCCHHHHH
Confidence 378899999999999999999999998887777766 33799999964 33344 57664 478888
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
++++..+.. -+.|+||+|++ |.|+.+.|..+
T Consensus 541 ~Al~~A~~~-------------~~~VLVEefI~-G~EyRv~VIg~ 571 (737)
T TIGR01435 541 EALNIAFSE-------------DSSVIIEEFLP-GTEYRFFVLND 571 (737)
T ss_pred HHHHHHHhc-------------CCeEEEEeccc-CCEEEEEEECC
Confidence 888765422 14799999998 89999988755
No 66
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.57 E-value=2.9e-07 Score=92.35 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=76.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHH----HHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~e----a~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
...++..+|++|+++|||+|++..+.+.++ ...+.+.+ + ||+|+||.. +|.+ -||.+. +.+
T Consensus 120 l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~~--~-~P~vVKP~~--~gsS---------~Gv~~v~~~~ 185 (333)
T PRK01966 120 LSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKL--G-LPVFVKPAN--LGSS---------VGISKVKNEE 185 (333)
T ss_pred HHhCHHHHHHHHHHcCCCCCCEEEEeccccchhhHHHHHHhc--C-CCEEEEeCC--CCCc---------cCEEEECCHH
Confidence 457899999999999999999998876654 24456677 8 899999964 2222 368888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
++.+++++.++.. ..++||+|++ |+|+.+++..+
T Consensus 186 el~~a~~~~~~~~-------------~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 186 ELAAALDLAFEYD-------------RKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred HHHHHHHHHHhcC-------------CcEEEEcCcC-CEEEEEEEECC
Confidence 9999998875321 4799999999 79999999986
No 67
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.57 E-value=5.3e-07 Score=94.73 Aligned_cols=106 Identities=21% Similarity=0.235 Sum_probs=77.9
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCC-CeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CH
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVP-KGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp-~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ 101 (422)
+.-+..-++..+|++|+++|||+| .+..+++.+|+.++++.+ +|+|+||....+ || ||.+. |.
T Consensus 102 ~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~----~PvVVKP~~~ag--gk---------GV~iv~~~ 166 (486)
T PRK05784 102 KCARIEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG----GSVAIKPARQAG--GK---------GVKVIADL 166 (486)
T ss_pred HHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc----CCEEEeeCCCCC--CC---------CEEEECCh
Confidence 344556788899999999999996 788889999999888665 599999986554 33 58888 76
Q ss_pred HH-----HH----HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 102 EE-----VE----DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 102 ee-----~~----~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++ ++ +++++++.... ..|.....|+||||+. |.|+.+.+..|.
T Consensus 167 ~e~~~~~~~ea~~~a~~~~~~~~~------~~g~~~~~VlIEEfL~-G~E~SV~al~dG 218 (486)
T PRK05784 167 QAYLSQEKREALTKSVNDIKEGSA------YYKDVEPKILVEEKVD-GVEYTLQVLTDG 218 (486)
T ss_pred hHhcchhHHHHHHHHHHHHHHhHh------hccCCCCeEEEEEccC-CeEEEEEEEECC
Confidence 62 33 44455543210 1122235899999999 789999999875
No 68
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.55 E-value=8.9e-08 Score=88.33 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHH
Q 014588 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~ 109 (422)
++.-..++|+++|||+|++.++.+.+++.++.+.+ +.+|+|+|+.. |+.|+ ||.+. +.+++....+
T Consensus 3 dK~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~--~~~p~ViKp~~--g~~G~---------gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 3 DKLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEEL--GGFPVVIKPLR--GSSGR---------GVFLINSPDELESLLD 69 (190)
T ss_dssp BHHHHHHHHHHTT-----EEEESSHHHHHHHHHHH----SSEEEE-SB------------------EEEESHCHHHHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHh--cCCCEEEeeCC--CCCCC---------EEEEecCHHHHHHHHH
Confidence 35567899999999999999999999999999998 43899999954 43443 57777 8888877665
Q ss_pred HHhcccccccccCCCCcccceEEEEeecCCC--ceEEEEEEecCCC
Q 014588 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLV--NEMYFAIMLDRKT 153 (422)
Q Consensus 110 ~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g--~El~vgv~~D~~f 153 (422)
...... ..+++|+|++.. +++.+-+.-+..+
T Consensus 70 ~~~~~~-------------~~~~~Q~fI~~~~g~d~Rv~Vig~~vv 102 (190)
T PF08443_consen 70 AFKRLE-------------NPILVQEFIPKDGGRDLRVYVIGGKVV 102 (190)
T ss_dssp -----T-------------TT-EEEE----SS---EEEEEETTEEE
T ss_pred HHHhcc-------------CcceEeccccCCCCcEEEEEEECCEEE
Confidence 432111 357999999753 5888887655543
No 69
>PRK07206 hypothetical protein; Provisional
Probab=98.53 E-value=8e-07 Score=91.56 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCC---eEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK---ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~---PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
.-+++..+++|.++|||+|++..+++.+|+.++++.+ | | |+|+||....| + -||.+. |.+|+
T Consensus 106 ~~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~--g-~~~~P~VvKP~~g~g--s---------~gv~~v~~~~el 171 (416)
T PRK07206 106 RRNKAEMINALAEAGLPAARQINTADWEEAEAWLREN--G-LIDRPVVIKPLESAG--S---------DGVFICPAKGDW 171 (416)
T ss_pred hhCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhc--C-CCCCCEEEeCCCCCC--C---------CCEEEeCCHHHH
Confidence 3588899999999999999999999999999999998 7 7 99999964322 1 368888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEe
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIML 149 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~ 149 (422)
+++++++.+... . .+.....++||||++ |.|+.+.+..
T Consensus 172 ~~~~~~~~~~~~---~---~~~~~~~~lvEe~i~-G~E~sv~~~~ 209 (416)
T PRK07206 172 KHAFNAILGKAN---K---LGLVNETVLVQEYLI-GTEYVVNFVS 209 (416)
T ss_pred HHHHHHHHhccc---c---CCCCCCeEEEEEccc-cEEEEEEEEE
Confidence 999999875320 0 122125899999998 7899888765
No 70
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.52 E-value=7.7e-07 Score=90.34 Aligned_cols=96 Identities=14% Similarity=0.229 Sum_probs=74.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeC------CHHHHHHH-HhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVA------SVDEVKKA-IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~------s~~ea~~~-a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~- 99 (422)
...+++.+|++|+++|||||++..++ +.+++... .+.+ | ||+++||.. +|.+ -||.+.
T Consensus 126 l~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~l--g-~PviVKP~~--~GsS---------~Gv~~v~ 191 (364)
T PRK14570 126 ISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVL--G-YPVIVKPAV--LGSS---------IGINVAY 191 (364)
T ss_pred HHHCHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHHHHHhc--C-CCEEEEeCC--CCCC---------CcEEEeC
Confidence 44788999999999999999987764 34555443 4567 8 899999964 2222 368888
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 100 ~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
|.+++.+++++.+... ..++||++++ |+|+.+++..|.
T Consensus 192 ~~~el~~al~~a~~~~-------------~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 192 NENQIEKCIEEAFKYD-------------LTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred CHHHHHHHHHHHHhCC-------------CCEEEECCcC-CEEEEEEEECCC
Confidence 9999999999876321 3699999998 899999998664
No 71
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.52 E-value=4.9e-07 Score=91.05 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=73.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
...++..+|++|+++|||+|++..+++.++.. .+.+ + ||+|+||.. +|.++ ||.+. |.+++.+
T Consensus 129 i~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~--~~~l--~-~P~iVKP~~--~gsS~---------Gv~~v~~~~eL~~ 192 (343)
T PRK14568 129 LCMDKSLAYIVAKNAGIATPAFWTVTADERPD--AATL--T-YPVFVKPAR--SGSSF---------GVSKVNSADELDY 192 (343)
T ss_pred HHhCHHHHHHHHHHcCcCcCCEEEEECCchhh--hhhc--C-CCEEEEeCC--CCCCC---------CEEEeCCHHHHHH
Confidence 34678899999999999999999988765432 3567 8 899999964 22233 68888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++...... ..++||+|++ |+|+.+++..+.
T Consensus 193 a~~~a~~~~-------------~~vlVEe~I~-G~E~sv~vl~~~ 223 (343)
T PRK14568 193 AIESARQYD-------------SKVLIEEAVV-GSEVGCAVLGNG 223 (343)
T ss_pred HHHHHHhcC-------------CcEEEECCcC-CEEEEEEEEcCC
Confidence 988764321 3699999998 799999998764
No 72
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.49 E-value=1.2e-06 Score=91.08 Aligned_cols=121 Identities=21% Similarity=0.240 Sum_probs=80.1
Q ss_pred hhhhhhhccccccchhHHhhhcccCCCHHHHHHHHHHcCCCCC-CeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCC
Q 014588 5 LLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVP-KGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGR 83 (422)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~GIpvp-~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~r 83 (422)
+.+++...-+.+.+-- .+.-+..-++..+|++|.++|||+| .+..+.+.+|+..++..+ + ||+|+||....|+
T Consensus 81 ~~~~l~~~Gi~v~gps--~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~--~-~PvVVKP~~~sgg- 154 (435)
T PRK06395 81 LVNNLLKRGIKVASPT--MEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITS--M-KDVAVKPIGLTGG- 154 (435)
T ss_pred HHHHHHHCCCcEECCC--HHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhh--C-CCEEEEeCCCCCC-
Confidence 3344444444544432 2234456788899999999999997 555777888888888888 8 8999999766543
Q ss_pred CCCCccCCCcceEEEC-CH-HHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 84 GLGTFKSGLKGGVHIV-KK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 84 gk~~~~s~~~GGV~l~-~~-ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
| ||.+. +. ++..+++....... . . ...++||||+. |.|+.+-+..|..
T Consensus 155 -k---------GV~v~~~~~~~~~ea~~~~~~~~----~---~---~~~viIEEfl~-G~E~Svd~~~dg~ 204 (435)
T PRK06395 155 -K---------GVKVTGEQLNSVDEAIRYAIEIL----D---R---DGVVLIEKKMT-GEEFSLQAFSDGK 204 (435)
T ss_pred -C---------CeEEecCchhhHHHHHHHHHHHh----C---C---CCcEEEEeecC-CceEEEEEEEcCC
Confidence 3 47766 32 33333333222110 0 0 13699999998 7899999998854
No 73
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.46 E-value=1.2e-06 Score=96.33 Aligned_cols=92 Identities=25% Similarity=0.291 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC----CHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE 105 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~----~~ee~~ 105 (422)
-++..+|++|+++|||+|++..+.+.+++..+.+.+. | ||+|+||... +.|+ ||.+. +.+++.
T Consensus 487 ~DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~-g-~PvVVKP~~g--~~G~---------GV~~~~~~~~~eel~ 553 (752)
T PRK02471 487 ENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFA-D-KAIVVKPKST--NFGL---------GISIFKEPASLEDYE 553 (752)
T ss_pred hCHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhc-C-CCEEEEECCC--CCcC---------CeEEecCcCCHHHHH
Confidence 4788999999999999999999999999988777641 6 8999999753 3343 46652 788999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEE
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIM 148 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~ 148 (422)
++++..+... ..++||||++ |.|+.+.+.
T Consensus 554 ~A~~~a~~~~-------------~~vlVEEfI~-G~E~Rv~Vi 582 (752)
T PRK02471 554 KALEIAFRED-------------SSVLVEEFIV-GTEYRFFVL 582 (752)
T ss_pred HHHHHHHhcC-------------CcEEEEeccc-CCEEEEEEE
Confidence 9888765321 3699999998 899998776
No 74
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.42 E-value=2e-06 Score=96.89 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=80.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-+++..|++|+++|||+|++..+++.+|+.++++.+ + ||+|+||....| + -||.+. |.+++.+
T Consensus 104 ~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~--~-~PvVVKP~~g~g--S---------~GV~~v~~~~el~~ 169 (887)
T PRK02186 104 TCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGL--T-YPVVVKPRMGSG--S---------VGVRLCASVAEAAA 169 (887)
T ss_pred HhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhC--C-CCEEEEeCCCCC--C---------CCeEEECCHHHHHH
Confidence 35678889999999999999999999999999999898 8 899999964322 2 368888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++.+.... ...++||||++ |.|+.+.+..+.
T Consensus 170 a~~~~~~~~------------~~~~lvEEfI~-G~E~sVe~i~~~ 201 (887)
T PRK02186 170 HCAALRRAG------------TRAALVQAYVE-GDEYSVETLTVA 201 (887)
T ss_pred HHHHHHhcC------------CCcEEEeeccc-CCcEEEEEEEEC
Confidence 998875321 24799999999 789999888774
No 75
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.35 E-value=3.8e-06 Score=83.52 Aligned_cols=91 Identities=24% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHH--HHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKK--AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~--~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
.-++...+++|+++|||+|++..+++.+|+.+ ..+++ + ||+|+||.... .+ -||.+. |.+++.
T Consensus 109 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--~-~P~viKP~~g~--~s---------~gv~~v~~~~el~ 174 (326)
T PRK12767 109 CNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGEL--Q-FPLFVKPRDGS--AS---------IGVFKVNDKEELE 174 (326)
T ss_pred HhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccC--C-CCEEEEeCCCC--Cc---------cCeEEeCCHHHHH
Confidence 45678889999999999999999999999887 45677 8 89999995422 12 358888 999988
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++++. ..++||||++ |.|+.+.+..|.
T Consensus 175 ~~~~~~-----------------~~~lvqeyi~-G~e~~v~~~~~~ 202 (326)
T PRK12767 175 FLLEYV-----------------PNLIIQEFIE-GQEYTVDVLCDL 202 (326)
T ss_pred HHHHhC-----------------CCeEEEeccC-CceEEEEEEEcC
Confidence 776542 2789999996 899999999884
No 76
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.34 E-value=3.8e-06 Score=81.67 Aligned_cols=100 Identities=18% Similarity=0.125 Sum_probs=73.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
...++...+++|+++|||+|++..+.+.+++..+.+.+ + ||+|+||...++ |+ ||.+. +.+++.+
T Consensus 84 ~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~--~-~P~vvKP~~g~~--g~---------gv~~v~~~~~l~~ 149 (280)
T TIGR02144 84 ACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEAL--G-YPVVLKPVIGSW--GR---------LVALIRDKDELES 149 (280)
T ss_pred HHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHc--C-CCEEEEECcCCC--cC---------CEEEECCHHHHHH
Confidence 45667778999999999999999999999998888888 8 899999965322 22 47777 8888887
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCC-CceEEEEEEec
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLD 150 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~-g~El~vgv~~D 150 (422)
+++...... +.....+++|||+++ +.|+.+.+..+
T Consensus 150 ~~~~~~~~~---------~~~~~~~ivQefI~~~~~d~~v~vig~ 185 (280)
T TIGR02144 150 LLEHKEVLG---------GSQHKLFYIQEYINKPGRDIRVFVIGD 185 (280)
T ss_pred HHHHHHhhc---------CCcCCeEEEEcccCCCCCceEEEEECC
Confidence 664321100 001236999999974 67887777533
No 77
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.33 E-value=2.3e-05 Score=81.35 Aligned_cols=108 Identities=18% Similarity=0.330 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 31 HEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
++..+|+++.+.|+|+.+++ .+.+.+++...++++ | |||.+|+. +||-|| |.++. +++++.++
T Consensus 115 dK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~ei--G-yPVlIKAs--aGGGGK---------GMRvv~~~~e~~e~ 180 (645)
T COG4770 115 DKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEI--G-YPVLIKAS--AGGGGK---------GMRVVETPEEFAEA 180 (645)
T ss_pred cHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhc--C-CcEEEEec--cCCCCC---------ceEeecCHHHHHHH
Confidence 46689999999999997775 578899999999999 9 99999995 455566 58899 99999998
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++.-.... ...+|. ..++||+|+..-+-+-+-+.-|.. |.++-.|
T Consensus 181 l~sarrEA-----~asFGd--drv~iEkyl~~PRHIEiQV~aD~H--GNvv~Lg 225 (645)
T COG4770 181 LESARREA-----KASFGD--DRVFIEKYLDKPRHIEIQVFADQH--GNVVHLG 225 (645)
T ss_pred HHHHHHHH-----HhhcCC--ceEehhhhcCCCceEEEEEEecCC--CCEEEee
Confidence 88665433 113464 689999999766777788888874 7888776
No 78
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.32 E-value=4.5e-06 Score=89.10 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEE-C-CHHHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVEDL 107 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l-~-~~ee~~~a 107 (422)
-++..+|++|++.|||+|++..+.+.+++.++++++ | |+|+||.. |+.|+ ||.+ . +++++.++
T Consensus 296 ~DK~~tk~lL~~aGIpVP~~~~~~~~~~~~~~~~~~--G--~vVVKP~~--G~~G~---------Gv~v~v~~~~eL~~a 360 (547)
T TIGR03103 296 DDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEH--G--AVVVKPVR--GEQGK---------GISVDVRTPDDLEAA 360 (547)
T ss_pred cCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHh--C--CEEEEECC--CCCCc---------CeEEecCCHHHHHHH
Confidence 478899999999999999999999999999999998 6 69999964 33343 5777 4 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
++...... ..++||+|++ |.|+.+.|..+
T Consensus 361 ~~~a~~~~-------------~~vlvEe~i~-G~d~Rv~Vigg 389 (547)
T TIGR03103 361 IAKARQFC-------------DRVLLERYVP-GEDLRLVVIDF 389 (547)
T ss_pred HHHHHhcC-------------CcEEEEEecc-CCeEEEEEECC
Confidence 88765321 3799999998 78988877644
No 79
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.28 E-value=5.4e-06 Score=80.39 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=69.3
Q ss_pred HHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEECCHHHHHHHHHHHhccccccc
Q 014588 40 AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTK 119 (422)
Q Consensus 40 ~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~~~ee~~~a~~~l~~~~~~~~ 119 (422)
++.|+||.++..++|.+|..++++.+ | ||+|+||...+ +|| |-..+.+++++.++|+.-.+...
T Consensus 123 eeLglpTs~Y~fa~s~~e~~~a~~~i--G-fPcvvKPvMSS--SGk--------Gqsvv~~~e~ve~AW~~A~~g~R--- 186 (394)
T COG0027 123 EELGLPTSKYRFADSLEELRAAVEKI--G-FPCVVKPVMSS--SGK--------GQSVVRSPEDVEKAWEYAQQGGR--- 186 (394)
T ss_pred HHhCCCCccccccccHHHHHHHHHHc--C-CCeeccccccc--CCC--------CceeecCHHHHHHHHHHHHhcCC---
Confidence 34799999999999999999999999 9 89999996544 345 33444499999999998765431
Q ss_pred ccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 120 QTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 120 ~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
|. ...|+||++++...|+.+=..+.
T Consensus 187 -----~~-~~RVIVE~fv~fd~EiTlLtvr~ 211 (394)
T COG0027 187 -----GG-SGRVIVEEFVKFDFEITLLTVRA 211 (394)
T ss_pred -----CC-CCcEEEEEEecceEEEEEEEEEE
Confidence 21 36899999999888876554444
No 80
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=98.27 E-value=1.1e-05 Score=70.70 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=74.5
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHH
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNA 370 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~ 370 (422)
+|+|+++|-||+++....|.+...|+-..-.+-++.+++- .+.+.++.+.+||+++.|++.+-+- .+. +.+.++
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv-~~~d~l~~~~~D~~t~~I~ly~E~~-~d~----~~f~~~ 74 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADV-DFADLLEYLAEDPDTRVIVLYLEGI-GDG----RRFLEA 74 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS--HHHHHHHHCT-SS--EEEEEES---S-H----HHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccC-CHHHHHHHHhcCCCCCEEEEEccCC-CCH----HHHHHH
Confidence 4789999999999999999999999855444444444432 3779999999999999999877632 233 445555
Q ss_pred HHhcCCCCcEEEEeCCC-----------------CHHHHHHHHHHcCCCcccccCHHHHHHHH
Q 014588 371 AKQVALKVPVVVRLEGT-----------------NVDQGKRILKESGMTLITAEDLDDAAEKA 416 (422)
Q Consensus 371 ~~~~~~~kpivv~~~g~-----------------~~~~~~~~L~~~Gip~~vf~~~e~Av~al 416 (422)
.++....|||++...|. ....-...|++.|+- ..+++++.+.++
T Consensus 75 ~~~a~~~KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~--~v~~~~el~~~~ 135 (138)
T PF13607_consen 75 ARRAARRKPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVV--RVDDLDELLDAA 135 (138)
T ss_dssp HHHHCCCS-EEEEE---------------------HHHHHHHHHHCTEE--EESSHHHHHHHH
T ss_pred HHHHhcCCCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCce--EECCHHHHHHHH
Confidence 55433459999875442 112234578999988 888888877654
No 81
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.26 E-value=8.5e-06 Score=82.29 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=75.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-+...-|++|+++|||+|++ +.++++ + + +|+|+||....| | -||.+. |++++.+
T Consensus 120 ~e~dK~~~k~~L~~aGIp~p~~--~~~~~~-------i--~-~PvIVKp~~g~g--g---------kGv~i~~s~~El~~ 176 (358)
T PRK13278 120 WEADRDKERKLLEEAGIRIPRK--YESPED-------I--D-RPVIVKLPGAKG--G---------RGYFIAKSPEEFKE 176 (358)
T ss_pred HhcCHHHHHHHHHHcCCCCCCE--eCCHHH-------c--C-CCEEEEeCCCCC--C---------CCeEEeCCHHHHHH
Confidence 3455777899999999999986 566553 5 6 799999954322 3 368888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++++.++.. .+. .+.++||||+. |.|+++-+...|-. |=+-++|
T Consensus 177 ~~~~l~~~~~-------~~~-~~~~iIEEfI~-G~e~sv~~f~s~~~-~~~e~l~ 221 (358)
T PRK13278 177 KIDKLIERGL-------ITE-VEEAIIQEYVV-GVPYYFHYFYSPIK-NRLELLG 221 (358)
T ss_pred HHHHHHhccc-------cCC-CCeEEEEecCC-CcEEEEEEEEeccC-CeEEEEe
Confidence 9999875431 122 46899999998 88999999887643 4555555
No 82
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.26 E-value=1e-05 Score=78.17 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=72.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
...+++..+++|+++|||+|++..+.+.+++.+..+++ + ||+|+||...++ | -||.+. +.+++.+
T Consensus 85 ~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~--~-~p~vvKP~~g~~--g---------~gv~~i~~~~~l~~ 150 (277)
T TIGR00768 85 NAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEI--G-FPVVLKPVFGSW--G---------RLVSLARDKQAAET 150 (277)
T ss_pred HHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhc--C-CCEEEEECcCCC--C---------CceEEEcCHHHHHH
Confidence 34677788999999999999999999999999999998 8 899999975322 3 357777 9888887
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCC--ceEEEEEE
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLV--NEMYFAIM 148 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g--~El~vgv~ 148 (422)
+++.+.... .....+++|+|+++. .++.+-+.
T Consensus 151 ~~~~~~~~~----------~~~~~~lvQe~I~~~~~~~~rv~v~ 184 (277)
T TIGR00768 151 LLEHFEQLN----------GPQNLFYVQEYIKKPGGRDIRVFVV 184 (277)
T ss_pred HHHHHHHhc----------ccCCcEEEEeeecCCCCceEEEEEE
Confidence 776543211 001469999999843 46555543
No 83
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.25 E-value=4.3e-06 Score=83.34 Aligned_cols=165 Identities=24% Similarity=0.264 Sum_probs=104.0
Q ss_pred hhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhC-CCCCeEEEEEeeccCCCCCCCccCCCcceEEEC--
Q 014588 23 QQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAF-PDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-- 99 (422)
Q Consensus 23 ~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~-~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-- 99 (422)
.++-...-+++...+.+++.|||+|+++.++|++|..++.+++- .+ .|+.+||..-.||+ |.++-
T Consensus 99 ~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~-~~~CvKP~~g~gg~-----------GFr~l~~ 166 (329)
T PF15632_consen 99 AETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPG-QPLCVKPAVGIGGR-----------GFRVLDE 166 (329)
T ss_pred HHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCC-ceEEEecccCCCcc-----------eEEEEcc
Confidence 34444566788889999999999999999999999999999872 22 35999997544433 23333
Q ss_pred CHHHHHHHHH------------HHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCcee-eecc-CCC
Q 014588 100 KKEEVEDLAG------------KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII-IGCS-KGG 165 (422)
Q Consensus 100 ~~ee~~~a~~------------~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi-~~g~-~GG 165 (422)
+.+++...++ .+++.. ..+...+|.||++ |.|++|-+..+. |-++ .+.+ ..|
T Consensus 167 ~~~~l~~l~~~~~~~i~~~~~~~~l~~~----------~~~~~llvMeyL~-G~EySVD~l~~~---G~viaaV~R~K~G 232 (329)
T PF15632_consen 167 SRDELDALFEPDSRRISLDELLAALQRS----------EEFPPLLVMEYLP-GPEYSVDCLADE---GRVIAAVPRRKLG 232 (329)
T ss_pred CcchHHHhcCCCcceeCHHHHHHHHhcc----------CCCCCcEEecCCC-CCeEEEEEEecC---CEEEEEEEEEecC
Confidence 4444443333 222211 2357899999999 899999999987 4454 4442 222
Q ss_pred ceeeeccccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcC--CCcEEeeeeeEE
Q 014588 166 TSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEINPLAE 238 (422)
Q Consensus 166 i~iE~~~d~~~d~~~~~~i~p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~--~~~~lEiNPl~v 238 (422)
..- .+--++. -...|+++.+.+|+.+.-.- |+-.|. ...+|||||..-
T Consensus 233 ~~q------------~l~~~~~---l~e~a~~l~~~~~l~g~~Ni----------Q~r~d~~g~p~LLEINpR~s 282 (329)
T PF15632_consen 233 RRQ------------VLENDEE---LIELARRLAEAFGLDGLFNI----------QFRYDEDGNPKLLEINPRPS 282 (329)
T ss_pred cee------------EEEECHH---HHHHHHHHHHHhCCCceEEE----------EEEEcCCCCEEEEEeCCCCc
Confidence 111 1111110 12567788888887653111 222223 467999999754
No 84
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=98.21 E-value=3.8e-07 Score=92.45 Aligned_cols=285 Identities=19% Similarity=0.143 Sum_probs=176.1
Q ss_pred CeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCC------Cce
Q 014588 70 KELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL------VNE 142 (422)
Q Consensus 70 ~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~------g~E 142 (422)
...|.|++.....++| .|-|.++ +-.+..++.+.+..... +-..+.|. ..-..||+++++ -.|
T Consensus 80 ~rsv~k~~m~~~k~~k-------i~lvAiiAegvpe~~~~kl~~~a~~--k~~~iiGP-aTvggVePg~fkignt~g~~d 149 (600)
T KOG1254|consen 80 TRSVAKPDMLALKRGK-------IGLVAIIAEGVPEADTRKLRAGAEV--KGVGIIGP-ATVGGVEPGVFKIGNTGGMMD 149 (600)
T ss_pred hhhhhcchHHHhhcCc-------ceEEEEEecCCcHHHHHHHHhcccc--ccceEEee-eeeccccCCccccCCCCcchh
Confidence 3568899877777777 4888888 54444555555443321 00111222 356788999864 579
Q ss_pred EEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecCCCCCC----CHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 014588 143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI----TDEDAAKVVDGLAPKVADRNDAIEQVKK 218 (422)
Q Consensus 143 l~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~p~~~l----~~~~a~~l~~~lg~~~~d~~~l~~~l~~ 218 (422)
.|+.+..+|. |.++.|+..||+++|.-.+ .+...- -|-+++ +.+-..-+++.+ +....+.+.++++.
T Consensus 150 nil~~klyR~--Gsv~~vS~sGGmsnE~nn~----isrtt~-g~~egiaiggd~~pgSTl~dhi--~r~q~~~~vk~Iv~ 220 (600)
T KOG1254|consen 150 NILNSKLYRP--GSVIYVSRSGGMSNELNNI----ISRTTD-GPYEGIAIGGDRYPGSTLIDHI--PREQHDPLVKFIVV 220 (600)
T ss_pred hhhhhcccCC--ccEEEEecCCCcchhhhhh----hhheec-cceeeeeccCCCccCchHhhhh--hhhhccChhheEEe
Confidence 9999999996 7999999999999998553 233221 111110 111112222222 22334567888999
Q ss_pred HHHHhhcCCCcEEeee-------eeEEecCCc---EEEEeeEEeeCCCccccchhhcccCC-----CCCCCHH-------
Q 014588 219 LYKLFCESDCTLLEIN-------PLAETSGKQ---LVAADAKLNFDDNAAFRQKEIFALRD-----PTQEDPR------- 276 (422)
Q Consensus 219 l~~l~~~~~~~~lEiN-------Pl~v~~~g~---~~alDa~i~ld~~a~~r~~~~~~~~~-----~~~~~~~------- 276 (422)
|+.++-+.+.+.+|+| |+++-..|. +.-+|.+...++.+.|..-.-+...- .....++
T Consensus 221 Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~ 300 (600)
T KOG1254|consen 221 LGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGA 300 (600)
T ss_pred ehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhh
Confidence 9999999999999999 998865552 45678888888777665543332110 0000011
Q ss_pred ---------------------------HHHHhhcCCceecCCCeEEEEEcCc-cHHHHHHHHHHHCCCC--CCCeeeccC
Q 014588 277 ---------------------------EVAAAKADLNYIGLDGEIGCMVNGA-GLAMATMDIIKLHGGT--PANFLDVGG 326 (422)
Q Consensus 277 ---------------------------e~~a~~~~~~~~~~~g~vaiitngG-G~gv~~~D~l~~~G~~--~~NPlDl~g 326 (422)
|..+.+..+..++.++++.....+| |.-+..+|+....|.. .+|.-.+++
T Consensus 301 ~i~~~~e~lv~~Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sl 380 (600)
T KOG1254|consen 301 DIQETYEFLVPFGRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSL 380 (600)
T ss_pred hhccchhcccccceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEcc
Confidence 1112233355666788986666666 9999999999998884 689888988
Q ss_pred CCCHHH---H-HHHHHHHH-cCCCccEEEEEccCCCCC---hHHHHHHHHHHHHh
Q 014588 327 NASEGQ---V-VEAFKILT-SDEKVKAILVNIFGGIMK---CDVIASGIVNAAKQ 373 (422)
Q Consensus 327 ~~~~~~---~-~~al~~ll-~d~~vd~ilv~i~~~~~~---~~~~a~~i~~~~~~ 373 (422)
-+...+ | .+.+++++ -+|+=+.-+..+.+++.+ ..+....|++.+.+
T Consensus 381 lw~~~~lp~Ya~kfie~~~m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~gLlt 435 (600)
T KOG1254|consen 381 LWFQRRLPQYARKFIEICTMLTADHGPAVSGAGNTIANFRAGKDLFSSLVRGLLT 435 (600)
T ss_pred ccccccchHHHHHHHHHHhhccCCCCceeEeccCceEEeccHHHHHHHHHHHHhh
Confidence 887664 3 57788887 455555544444454442 23344555555443
No 85
>PRK06849 hypothetical protein; Provisional
Probab=98.12 E-value=1.8e-05 Score=81.02 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=66.8
Q ss_pred hhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CH
Q 014588 23 QQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (422)
Q Consensus 23 ~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ 101 (422)
.+.-++..+++..++++++.|||+|++..+++.+++.++..+.. + ||+|+||.... +. .||.+. +.
T Consensus 108 ~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~-~-~P~vlKP~~~~---~~--------~~v~~~~~~ 174 (389)
T PRK06849 108 FELLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTP-H-TPYVLKPIYSR---FV--------RRVDLLPKE 174 (389)
T ss_pred HHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCC-C-CcEEEEeCccc---CC--------CeEEEecCH
Confidence 34555668899999999999999999999999999988776531 5 89999996432 11 456666 73
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEE-EEEec
Q 014588 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYF-AIMLD 150 (422)
Q Consensus 102 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~v-gv~~D 150 (422)
+++. .+.. .. ...+++||+++ |.|+.+ ++.+|
T Consensus 175 ~~l~----~~~~-----------~~-~~~~ivQe~I~-G~e~~~~~~~~~ 207 (389)
T PRK06849 175 AALK----ELPI-----------SK-DNPWVMQEFIQ-GKEYCSYSIVRS 207 (389)
T ss_pred HHhc----cccc-----------CC-CCCeEEEEEec-CCeEEEEEEEEC
Confidence 3221 1110 00 13699999999 567644 44443
No 86
>PLN02522 ATP citrate (pro-S)-lyase
Probab=98.04 E-value=5.7e-05 Score=80.73 Aligned_cols=124 Identities=17% Similarity=0.230 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+||+||-||+++...+|.+...|+-..-.+-+|+++... .+.+.++.+.+||++++|++..--+..+....++.+
T Consensus 166 ~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~- 244 (608)
T PLN02522 166 RPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEAL- 244 (608)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHH-
Confidence 378999999999999999999999999777778888877633 478999999999999999986653333444444443
Q ss_pred HHHHhcCCCCcEEEEeCCCCH-----------------------HHHHHHHHHcCCCcccccCHHHHHHHHHHH
Q 014588 369 NAAKQVALKVPVVVRLEGTNV-----------------------DQGKRILKESGMTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~~~-----------------------~~~~~~L~~~Gip~~vf~~~e~Av~al~~~ 419 (422)
++....|||+++..|... ..-...|+++|+. +-+++++-...+.+.
T Consensus 245 ---~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~--vv~s~~El~~~~~~~ 313 (608)
T PLN02522 245 ---KQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAI--VPTSFEALEAAIKET 313 (608)
T ss_pred ---HHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCe--EeCCHHHHHHHHHHH
Confidence 332247999987544322 1224579999999 999999887776654
No 87
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=98.02 E-value=8.1e-05 Score=73.73 Aligned_cols=125 Identities=15% Similarity=0.259 Sum_probs=94.1
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE-GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~-~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+|+++|-||+++...++.+...|+-..-.+-+++++.. -.+.++|+.+.+||++++|++..-.+.. .++-+...+
T Consensus 168 ~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~-~e~~aa~fi 246 (317)
T PTZ00187 168 KKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGT-AEEEAAEWI 246 (317)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCc-hhHHHHHHH
Confidence 37899999999999999999999999988888899988733 3488999999999999999986543222 223333444
Q ss_pred HHHHhcCCCCcEEEEeCCCCH--------------------HHHHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 369 NAAKQVALKVPVVVRLEGTNV--------------------DQGKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~~~--------------------~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
+.. ...|||++...|... ..-...|+++|++ +-+++++-.+.+....
T Consensus 247 ~~~---~~~KPVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~--v~~~~~el~~~~~~~~ 313 (317)
T PTZ00187 247 KNN---PIKKPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVR--VVKSPAQLGKTMLEVM 313 (317)
T ss_pred Hhh---cCCCcEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCe--EeCCHHHHHHHHHHHH
Confidence 432 147999987544321 1124469999999 9999999888877654
No 88
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=97.93 E-value=0.0001 Score=70.91 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=96.3
Q ss_pred eecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q 014588 287 YIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 287 ~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
++..+|+|+|+|-||.+.--++-.+...|+-..--+-++|+.-.- .|.++|+.+.+||+.++|+..---+. +.++.|.
T Consensus 141 ~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG-~aEe~AA 219 (293)
T COG0074 141 NIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGG-PAEEEAA 219 (293)
T ss_pred hhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCC-cHHHHHH
Confidence 344589999999999999999999999999777788889986654 49999999999999999986322111 3455555
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCC--------------------HHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 366 GIVNAAKQVALKVPVVVRLEGTN--------------------VDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 366 ~i~~~~~~~~~~kpivv~~~g~~--------------------~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
..++. +. ..||+|.+..|.. .++-.+.|+++|++ |-++|.+-.+.+..+.+
T Consensus 220 ~~i~~-~~--~~KPVVa~iaG~tap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~--v~etp~~l~~~l~~vl~ 290 (293)
T COG0074 220 EYIKA-NA--TRKPVVAYIAGRTAPEGKRMGHAGAIVSGGKGTAESKIAALEAAGVK--VAETPAELGELLLEVLK 290 (293)
T ss_pred HHHHH-hc--cCCCEEEEEeccCCCccchhhhhhhhhcCCCccHHHHHHHHHHcCCe--ecCCHHHHHHHHHHHhh
Confidence 54443 22 3599998755521 22335579999999 99999988887776643
No 89
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.90 E-value=6e-05 Score=77.24 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHcCCCCCCe--eeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 31 HEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~--~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
.+..+|+++++.|+|+.++ -...|.+++...+.++ | |||.+|+. +||-|| |.++. ++++.++.
T Consensus 111 ~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eI--g-yPvMiKa~--~GGGGk---------GMria~~~~ef~~~ 176 (670)
T KOG0238|consen 111 DKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREI--G-YPVMIKAT--AGGGGK---------GMRIAWSEEEFEEG 176 (670)
T ss_pred chHHHHHHHHhcCCccccCcccccccHHHHHHHHHhc--C-CcEEEEec--cCCCCc---------ceEeecChHHHHHH
Confidence 3568999999999998665 4678999999999999 9 99999996 355566 58899 99998888
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++...+... ..+|. +++++|+|+..-+-+-+-++-|. | |..+-++
T Consensus 177 ~~~ak~Ea~-----~sFGd--d~~llEkfi~npRHiEvQv~gD~-h-Gnav~l~ 221 (670)
T KOG0238|consen 177 LESAKQEAA-----KSFGD--DGMLLEKFIDNPRHIEVQVFGDK-H-GNAVHLG 221 (670)
T ss_pred HHHHHHHHH-----hhcCc--chhhHHHhccCCceEEEEEEecC-C-CcEEEec
Confidence 876554331 12454 69999999987777778888886 4 7888876
No 90
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00012 Score=72.89 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH-HHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE-EVEDL 107 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e-e~~~a 107 (422)
-++..+-++|.+.|||+|++.++.+++++....++.+ | +|+|+||-.-++ |+ ||.+. |.+ ++.+.
T Consensus 118 ~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~-g-~pvVlKp~~Gs~--G~---------gV~~v~~~d~~l~~~ 184 (318)
T COG0189 118 RNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHL-G-FPVVLKPLDGSG--GR---------GVFLVEDADPELLSL 184 (318)
T ss_pred hhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhc-C-CCEEEeeCCCCC--cc---------ceEEecCCChhHHHH
Confidence 4456678999999999999999999877777665542 7 899999954232 33 58888 777 77777
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEe
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIML 149 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~ 149 (422)
.+.+.+.. ..-+++|||++....-+..+..
T Consensus 185 ~e~~~~~~------------~~~~ivQeyi~~~~~~~rrivv 214 (318)
T COG0189 185 LETLTQEG------------RKLIIVQEYIPKAKRDDRRVLV 214 (318)
T ss_pred HHHHhccc------------cceEehhhhcCcccCCcEEEEE
Confidence 66665432 1368999999855533344333
No 91
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.87 E-value=0.00021 Score=70.17 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=88.0
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+|+++|-||+++...+|.+...|+-..-.+-++.+++.+ .+.+.++.+.+||++++|++.+-+........++.
T Consensus 142 ~~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~-- 219 (286)
T TIGR01019 142 KPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADF-- 219 (286)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHH--
Confidence 378999999999999999999999999777777777775422 47899999999999999998765432211222222
Q ss_pred HHHHhcCCCCcEEEEeCCCCH-------------------HH-HHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 369 NAAKQVALKVPVVVRLEGTNV-------------------DQ-GKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~~~-------------------~~-~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
++. ...|||+++-.|... .+ -...|++.|+. .-+++++-+..+.+
T Consensus 220 --~~~-~~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi--~v~~~~el~d~l~~ 284 (286)
T TIGR01019 220 --IKQ-NMSKPVVGFIAGATAPPGKRMGHAGAIISGGKGTAESKIEALEAAGVT--VVKSPSDIGELLAE 284 (286)
T ss_pred --HHh-cCCCCEEEEEecCCCCccccccchhhhhcCCCCCHHHHHHHHHHCCCe--EeCCHHHHHHHHHH
Confidence 221 147999986433211 12 24478999998 88999998887754
No 92
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.82 E-value=0.00032 Score=69.04 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=89.2
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+|+++|-||+++...+|.+...|+-..-.+-++..++.+ .+.+.++.+.+||++++|++.+-+........++.
T Consensus 144 ~~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~-- 221 (291)
T PRK05678 144 KKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEY-- 221 (291)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHH--
Confidence 378999999999999999999999999777777777764422 37799999999999999998766322211122222
Q ss_pred HHHHhcCCCCcEEEEeCCCCH--------------------HHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 369 NAAKQVALKVPVVVRLEGTNV--------------------DQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~~~--------------------~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
++.. ..|||++.-.|... ......|++.|+. ..+++++....+..+.+
T Consensus 222 --~~~~-~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi--~v~~~~el~~~~~~~~~ 289 (291)
T PRK05678 222 --IKAN-VTKPVVGYIAGVTAPPGKRMGHAGAIISGGKGTAEEKKEALEAAGVK--VARTPSEIGELLKEVLK 289 (291)
T ss_pred --HHHc-CCCCEEEEEecCCCCCCCcccchhhhccCCCCCHHHHHHHHHHCCCe--ECCCHHHHHHHHHHHHc
Confidence 2221 37999986433211 1112468999999 99999998888776643
No 93
>PRK06091 membrane protein FdrA; Validated
Probab=97.82 E-value=0.00018 Score=75.79 Aligned_cols=120 Identities=23% Similarity=0.258 Sum_probs=91.9
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCC-----CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN-----ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~-----~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
.+|+|++||-||+.+...++.+...|+-....+-+|+. +..-.+.++++.+.+||+++.|++.+-. ..+.+.
T Consensus 192 ~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kp---paE~v~ 268 (555)
T PRK06091 192 PEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKP---PAEAVR 268 (555)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEec---CchHHH
Confidence 38899999999999999999999999876666666655 2122478999999999999999986522 125566
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 365 SGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
+.+++++++ ..|||+++..|.... +. ++.|+- ..++.+++++....++
T Consensus 269 ~~fl~aar~--~~KPVVvlk~Grs~~-g~---~q~GVi--~a~tleEl~~~A~~la 316 (555)
T PRK06091 269 LKIINAMKA--TGKPVVALFLGYTPA-VA---RDENVW--FASTLDEAARLACLLS 316 (555)
T ss_pred HHHHHHHhh--CCCCEEEEEecCCch-hh---hcCCeE--EeCCHHHHHHHHHHHh
Confidence 788887776 489999985554322 22 678887 8889999998877665
No 94
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=97.80 E-value=0.00045 Score=68.18 Aligned_cols=124 Identities=17% Similarity=0.256 Sum_probs=90.7
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCC--CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN--ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGI 367 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~--~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i 367 (422)
.+|+|+++|-||+++...+|.+...|+-..-.+-++.+ ++. .+.+.++.+.+||+++.|++.+-++... ....+.+
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv-~~~d~L~yl~~Dp~T~~I~ly~E~~G~~-~~d~~~f 226 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGT-NFVDCLEKFVKDPQTEGIILIGEIGGTA-EEDAAAF 226 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCC-CHHHHHHHHhhCCCCcEEEEEeccCCch-HHHHHHH
Confidence 37899999999999999999999999877666777766 332 3789999999999999999877642111 1223455
Q ss_pred HHHHHhcCCCCcEEEEeCCCCH--------------------HHHHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 368 VNAAKQVALKVPVVVRLEGTNV--------------------DQGKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 368 ~~~~~~~~~~kpivv~~~g~~~--------------------~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
+++.+ ..|||+++-.|... ..-...+++.|+. .-+|+++-...+-...
T Consensus 227 ~~aa~---~~KPVV~lk~Grs~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi--~v~~~~el~~~~~~~~ 294 (300)
T PLN00125 227 IKESG---TEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVT--VVESPAKIGVAMLEVF 294 (300)
T ss_pred HHHhc---CCCCEEEEEecCCCCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCe--EeCCHHHHHHHHHHHH
Confidence 55543 37999986433221 1124478999999 9999999888876543
No 95
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.74 E-value=0.00037 Score=72.75 Aligned_cols=123 Identities=22% Similarity=0.315 Sum_probs=89.5
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVN 369 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~ 369 (422)
..|+|+++|-||+++...+|.+...|+-..-.+-++.+++ -.+.+.++.+.+||++++|++++-+ +.+.. .+.+
T Consensus 149 ~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d-~~~~d~l~~l~~D~~t~~I~ly~E~-~~~~~----~f~~ 222 (447)
T TIGR02717 149 KKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKAD-IDESDLLEYLADDPDTKVILLYLEG-IKDGR----KFLK 222 (447)
T ss_pred CCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhh-CCHHHHHHHHhhCCCCCEEEEEecC-CCCHH----HHHH
Confidence 3689999999999999999999999986666666665543 2367999999999999999987664 23333 3444
Q ss_pred HHHhcCCCCcEEEEeCCCCHHH-----------------HHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 370 AAKQVALKVPVVVRLEGTNVDQ-----------------GKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 370 ~~~~~~~~kpivv~~~g~~~~~-----------------~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
++++...+|||+++-.|..... -...|++.|+. .-+++++-...+..++
T Consensus 223 aa~~a~~~KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~--~~~~~~el~~~~~~l~ 288 (447)
T TIGR02717 223 TAREISKKKPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVI--RADSIEELFDLARLLS 288 (447)
T ss_pred HHHHHcCCCCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeE--EeCCHHHHHHHHHHHh
Confidence 4443224799998755532111 12478999999 8899998888776655
No 96
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.74 E-value=0.00095 Score=71.98 Aligned_cols=135 Identities=14% Similarity=0.224 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
.=++..|+.+-.+.|+|+.+.. .+.+.+|+.++++.. | ||+.+|+.. ||-| .|.++. +++++.
T Consensus 119 ~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~--g-yPvmiKA~~--GGGG---------RGMR~vr~~~~l~ 184 (1149)
T COG1038 119 LGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEY--G-YPVMIKAAA--GGGG---------RGMRVVRSEADLA 184 (1149)
T ss_pred hccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhc--C-CcEEEEEcc--CCCc---------cceeeecCHHHHH
Confidence 3456778999999999985543 567799999999999 9 999999964 3323 357888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCcee-eeccCCCceeeeccccCCCeEEEEec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII-IGCSKGGTSIEDLAEKYPNMIVKVPI 184 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi-~~g~~GGi~iE~~~d~~~d~~~~~~i 184 (422)
+++.+..+... ...|. ..|+||+++..-+-+-+-+.-|.. |.+| +|-+ +--+- ++|. ++ +.+
T Consensus 185 ~~~~~AksEAk-----aAFG~--~eVyvEk~ve~pkHIEVQiLgD~~--GnvvHLfER----DCSvQ-RRhQ-KV--VE~ 247 (1149)
T COG1038 185 EAFERAKSEAK-----AAFGN--DEVYVEKLVENPKHIEVQILGDTH--GNVVHLFER----DCSVQ-RRHQ-KV--VEV 247 (1149)
T ss_pred HHHHHHHHHHH-----HhcCC--CcEEhhhhhcCcceeEEEEeecCC--CCEEEEeec----ccchh-hccc-ee--EEe
Confidence 99988765431 13464 689999999876777788888875 4544 4332 22222 2222 22 355
Q ss_pred CCCCCCCHHH
Q 014588 185 DVFNGITDED 194 (422)
Q Consensus 185 ~p~~~l~~~~ 194 (422)
.|...++++.
T Consensus 248 APa~~L~~~~ 257 (1149)
T COG1038 248 APAPYLSPEL 257 (1149)
T ss_pred cCCCCCCHHH
Confidence 6666666654
No 97
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.63 E-value=0.00038 Score=69.95 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHh
Q 014588 34 QGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML 112 (422)
Q Consensus 34 ~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~ 112 (422)
...++|+++|||+|+... ++ +++ . +||++|+.... |+. --|+.++ |++|+.+.++++.
T Consensus 129 ~~yk~L~~aGI~~Pk~~~--~p-------~eI--d-~PVIVKp~~as---G~~------srG~f~a~s~eEl~~~a~~l~ 187 (366)
T PRK13277 129 NYYWLLEKAGIPYPKLFK--DP-------EEI--D-RPVIVKLPEAK---RRL------ERGFFTASSYEDFYEKSEELI 187 (366)
T ss_pred HHHHHHHHcCCCCceeec--Cc-------ccc--C-ccEEEEECCCC---Ccc------ccCeEeeCCHHHHHHHHHhhh
Confidence 344699999999999765 33 356 6 79999997533 311 0368888 9999988877765
Q ss_pred cccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 113 ~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
....++ .+..+..+||||+. |.|+++-+..|+-. |-+-++|
T Consensus 188 ~~g~I~------~~~~~~~iIQEyI~-G~ey~~d~F~s~l~-g~ve~l~ 228 (366)
T PRK13277 188 KAGVID------REDLKNARIEEYVI-GAHFNFNYFYSPIR-DRLELLG 228 (366)
T ss_pred hcCccc------ccccccceeEeccC-CCEEEEEEEEeccC-CcEEEEE
Confidence 432111 11236788999998 89999999999765 6566655
No 98
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.53 E-value=7.8e-05 Score=81.01 Aligned_cols=136 Identities=20% Similarity=0.292 Sum_probs=99.7
Q ss_pred HHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccc
Q 014588 38 LMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQIL 116 (422)
Q Consensus 38 lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~ 116 (422)
-|.+.+.+..++..+++.+|+.++++++ | |||++.+...-||-|.| ++ |.+++.+.+..-+...
T Consensus 505 am~ei~e~ia~s~a~~sie~al~aae~l--~-ypvivRaayalgglgSg-----------fa~n~eeL~~l~~~a~a~s- 569 (1435)
T KOG0370|consen 505 ALNEINEKIAPSEAVSTIEEALEAAERL--G-YPVIVRAAYALGGLGSG-----------FANNEEELQDLAAQALALS- 569 (1435)
T ss_pred HHHhhcccccchhhHhHHHHHHHHHHhc--C-cHHHHHHHHHhcCcccc-----------ccccHHHHHHHHhhccccC-
Confidence 4567899999999999999999999999 8 89999986655544432 56 8888887776655432
Q ss_pred cccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeecc---ccCCCeEEEEecCCCCCCCHH
Q 014588 117 VTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLA---EKYPNMIVKVPIDVFNGITDE 193 (422)
Q Consensus 117 ~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~---d~~~d~~~~~~i~p~~~l~~~ 193 (422)
..++||+.+.+++|+-.-+.||.. +.||.++. .|.++ -..-|++ -+.|.+.+++.
T Consensus 570 ------------~QilvekSlkGwkevEyevvrDa~--~nciTvcn-----men~DplgihtGdSi---Vvapsqtlsd~ 627 (1435)
T KOG0370|consen 570 ------------PQILVEKSLKGWKEVEYEVVRDAY--DNCITVCN-----MENFDPLGIHTGDSI---VVAPSQTLSDE 627 (1435)
T ss_pred ------------ceeeehhhhccccceEEEEEeccc--cchhhhcC-----CcccCcceeeccceE---EEeeccccChH
Confidence 589999999999999999999985 68999995 34443 1122333 35677778875
Q ss_pred HH-------HHHHHhCCCCcccHH
Q 014588 194 DA-------AKVVDGLAPKVADRN 210 (422)
Q Consensus 194 ~a-------~~l~~~lg~~~~d~~ 210 (422)
+- -+.+++||..+.+.-
T Consensus 628 ey~mlrttaikVirhlgvvGEcni 651 (1435)
T KOG0370|consen 628 EYQMLRTTAIKVIRHLGVVGECNI 651 (1435)
T ss_pred HHHHHHhcchhheeccCCcccccc
Confidence 43 234667777665443
No 99
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.001 Score=66.36 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=72.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCC----HHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVAS----VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s----~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
.......+|.+++..|+|++++..++. .....+..+.+ + ||+++||.-. |. .=|+..+ +.+
T Consensus 100 ~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l--~-~p~~Vkp~~~----gS-------Svg~~~v~~~~ 165 (317)
T COG1181 100 GAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGL--G-FPLFVKPARE----GS-------SVGRSPVNVEG 165 (317)
T ss_pred hcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhccc--C-CCEEEEcCCc----cc-------eeeEEEeeecc
Confidence 446677899999999999999988864 22334555677 8 8999999632 11 1345556 777
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+.+++.+...... +.+++|+++. ++|+.+++..+..
T Consensus 166 d~~~~~e~a~~~d-------------~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 166 DLQSALELAFKYD-------------RDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred chHHHHHHHHHhC-------------CceeeccCCC-cceEEEEecCCcc
Confidence 8888777765443 4799999999 9999999998854
No 100
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=96.96 E-value=0.0022 Score=62.08 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHh
Q 014588 34 QGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML 112 (422)
Q Consensus 34 ~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~ 112 (422)
.-.....++|+|+|.++.++|..+. .+.++ - ||+++||..- |+++. ...+. +... |.||.+.++..-.
T Consensus 117 llY~ra~elgl~~P~Ty~v~S~~d~--~~~el--~-FPvILKP~mg-g~~~~----~araK-a~~a~d~ee~k~a~~~a~ 185 (415)
T COG3919 117 LLYNRAEELGLPYPKTYLVNSEIDT--LVDEL--T-FPVILKPGMG-GSVHF----EARAK-AFTAADNEEMKLALHRAY 185 (415)
T ss_pred HHHHHHHHhCCCCcceEEecchhhh--hhhhe--e-eeEEecCCCC-Cccee----ehhhh-eeeccCHHHHHHHHHHHH
Confidence 3456677899999999999986554 44566 5 8999999531 11111 00011 3445 8888888877765
Q ss_pred cccccccccCCCCcccceEEEEeecCCCceE--EEEEEecCCCCCceeeec
Q 014588 113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEM--YFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 113 ~~~~~~~~~~~~g~~~~~vlVee~i~~g~El--~vgv~~D~~f~gpvi~~g 161 (422)
+.. | .+.++||+||++|.|= ......|.. -|+.+|-
T Consensus 186 eei---------g--pDnvvvQe~IPGGgE~qfsyaAlw~~g--~pvaeft 223 (415)
T COG3919 186 EEI---------G--PDNVVVQEFIPGGGENQFSYAALWDKG--HPVAEFT 223 (415)
T ss_pred Hhc---------C--CCceEEEEecCCCCcccchHHHHHhCC--Cchhhhh
Confidence 432 2 3689999999988763 333444443 3665554
No 101
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=96.88 E-value=0.0039 Score=58.67 Aligned_cols=130 Identities=16% Similarity=0.300 Sum_probs=88.9
Q ss_pred eecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEc-cCCCCChHHHH
Q 014588 287 YIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNI-FGGIMKCDVIA 364 (422)
Q Consensus 287 ~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i-~~~~~~~~~~a 364 (422)
++..+|.|+|+|-||-+.--+.-.--.-|+--.--+-++|++.+- +|-.||++.++||+..+|+.+- .++ ..++-|
T Consensus 172 ~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG--~AEe~A 249 (329)
T KOG1255|consen 172 HIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGG--SAEEEA 249 (329)
T ss_pred ccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCC--hhhHHH
Confidence 444578999999999887777666666677666678888988765 4999999999999999988632 222 233333
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCC--------------------CHHHHHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 365 SGIVNAAKQVALKVPVVVRLEGT--------------------NVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~~~g~--------------------~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
...++........||+|.+..|. ...+-...|+++|+- +-++|..-=.+|.+..
T Consensus 250 A~flk~~nSg~~~kPVvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~--vt~sPa~lG~~~~~~~ 323 (329)
T KOG1255|consen 250 AEFLKEYNSGSTAKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVV--VTESPAKLGSAMLEEF 323 (329)
T ss_pred HHHHHHhccCCCCCceeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeE--EEcCHHHHHHHHHHHH
Confidence 33333221111479998654331 233445679999999 9999987766666543
No 102
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0082 Score=58.82 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=72.2
Q ss_pred HHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhc
Q 014588 35 GAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLG 113 (422)
Q Consensus 35 ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~ 113 (422)
=++||++.||+.|+ .++|++|+ . .||++|.....|| .|-.++ |+++..+-.++++.
T Consensus 128 ~~~lLekAgi~~P~--~~~~PeeI---------d-r~VIVK~pgAkgg-----------RGyFiA~s~eef~ek~e~l~~ 184 (361)
T COG1759 128 EYKLLEKAGLRIPK--KYKSPEEI---------D-RPVIVKLPGAKGG-----------RGYFIASSPEEFYEKAERLLK 184 (361)
T ss_pred HHHHHHHcCCCCCc--ccCChHHc---------C-CceEEecCCccCC-----------ceEEEEcCHHHHHHHHHHHHH
Confidence 35799999999998 56788764 5 6999998765432 357788 99999999999987
Q ss_pred ccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 114 QILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 114 ~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+-.+ ..+..+...||||+- |.-+|+-.+..+-. +-+=++|
T Consensus 185 ~gvi------~~edlkna~IeEYv~-G~~f~~~yFyS~i~-~~lEl~g 224 (361)
T COG1759 185 RGVI------TEEDLKNARIEEYVV-GAPFYFHYFYSPIK-DRLELLG 224 (361)
T ss_pred cCCc------chhhhhhceeeEEee-ccceeeeeeecccc-CceeEee
Confidence 6532 123357899999997 77888888888776 4444554
No 103
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=96.70 E-value=0.0077 Score=63.97 Aligned_cols=107 Identities=18% Similarity=0.367 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 31 HEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
++..++.+-.++|+|+.++. .+++.+|+.+++++. | +|+++|+.. ||-| .|.++. +.|+++++
T Consensus 147 DKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~y--G-~PvI~KAAy--GGGG---------RGmRvVr~~e~vee~ 212 (1176)
T KOG0369|consen 147 DKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEY--G-LPVIIKAAY--GGGG---------RGMRVVRSGEDVEEA 212 (1176)
T ss_pred hHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhc--C-CcEEEeecc--cCCC---------cceEEeechhhHHHH
Confidence 34568888899999987764 578999999999999 9 899999975 3323 357888 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeee
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~ 160 (422)
|++...... ...|. ..++||+|++.-+-+.+-+.-|.. |.++=.
T Consensus 213 f~Ra~SEA~-----aaFGn--G~~FvEkF~ekPrHIEvQllgD~~--GNvvHL 256 (1176)
T KOG0369|consen 213 FQRAYSEAL-----AAFGN--GTLFVEKFLEKPRHIEVQLLGDKH--GNVVHL 256 (1176)
T ss_pred HHHHHHHHH-----HhcCC--ceeeHHhhhcCcceeEEEEecccC--CCEEEE
Confidence 998776542 12343 468899999766777788877864 566543
No 104
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=96.61 E-value=0.013 Score=58.56 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHcC-------CCCCCeeeeCCHHHHH---HHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC
Q 014588 30 IHEYQGAELMAKYG-------INVPKGLAVASVDEVK---KAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV 99 (422)
Q Consensus 30 L~e~~ak~lL~~~G-------Ipvp~~~~~~s~~ea~---~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~ 99 (422)
++......+|.+.| ||+|++.++.+.+.+. ...+.+ + ||+|+||..-+ |..++ .++.+.
T Consensus 106 ~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l--~-~P~V~KPl~g~-Gss~g-------h~m~lv 174 (328)
T PLN02941 106 HNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGL--K-FPLVAKPLVAD-GSAKS-------HKMSLA 174 (328)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcC--C-CCEEEeecccC-CCccc-------cceEEe
Confidence 45566678899999 9999999999987644 334567 8 89999997643 22332 568888
Q ss_pred -CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCC-CceEEEEEEecC
Q 014588 100 -KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDR 151 (422)
Q Consensus 100 -~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~-g~El~vgv~~D~ 151 (422)
+++++.. + + ..+++|||+.+ |+-+-+-+.-|.
T Consensus 175 ~~~~~L~~----l-------------~---~p~~lQEfVnh~g~d~RVfVvGd~ 208 (328)
T PLN02941 175 YDQEGLSK----L-------------E---PPLVLQEFVNHGGVLFKVYVVGDY 208 (328)
T ss_pred cCHHHHHh----c-------------C---CcEEEEEecCCCCEEEEEEEECCE
Confidence 8877664 1 1 14899999964 555556555554
No 105
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=95.80 E-value=0.11 Score=59.93 Aligned_cols=83 Identities=20% Similarity=0.387 Sum_probs=65.8
Q ss_pred eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccc
Q 014588 51 AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVS 129 (422)
Q Consensus 51 ~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~ 129 (422)
.+.+++|..++++.+ | ||+.+|+. -||-|| |++-+ +.|+.+..|++..+.. +| .
T Consensus 224 cv~~~eegLeaae~I--G-fPvMIKAS--EGGGGK---------GIRkv~n~ddF~~lf~qv~~Ev--------PG---S 278 (2196)
T KOG0368|consen 224 CVRNVEEGLEAAEKI--G-FPVMIKAS--EGGGGK---------GIRKVENEDDFKALFKQVQNEV--------PG---S 278 (2196)
T ss_pred hcCCHHHHHHHHHhc--C-CceEEEec--cCCCCc---------ceeeccchHHHHHHHHHHHhhC--------CC---C
Confidence 367899999999999 9 89999995 355566 58888 9999999999886554 34 4
Q ss_pred eEEEEeecCCCceEEEEEEecCCCCCceeee
Q 014588 130 KVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (422)
Q Consensus 130 ~vlVee~i~~g~El~vgv~~D~~f~gpvi~~ 160 (422)
.+++.+...+.+-+-+-+.-|.- |.+|.+
T Consensus 279 PIFlMK~a~~ARHlEVQlLaDqY--Gn~IsL 307 (2196)
T KOG0368|consen 279 PIFLMKLADQARHLEVQLLADQY--GNVISL 307 (2196)
T ss_pred ceeeeecccCcceeeeehhhhhc--CCEeEe
Confidence 78888888888888899888863 666654
No 106
>PRK12458 glutathione synthetase; Provisional
Probab=95.41 E-value=0.094 Score=52.82 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=49.7
Q ss_pred CCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH--HHHHHHHHHhcccccccc
Q 014588 44 INVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE--EVEDLAGKMLGQILVTKQ 120 (422)
Q Consensus 44 Ipvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e--e~~~a~~~l~~~~~~~~~ 120 (422)
+++|++.+..+.+++.++.++. +..|+|+||..-++ | .||.+. +.+ .+....+.+..
T Consensus 139 ~~vP~T~v~~~~~~~~~~~~~~--~~~pvVvKPl~G~g--G---------~gV~~v~~~~~~~~~~ile~~~~------- 198 (338)
T PRK12458 139 EVRPTTHISRNKEYIREFLEES--PGDKMILKPLQGSG--G---------QGVFLIEKSAQSNLNQILEFYSG------- 198 (338)
T ss_pred CCCCCEEEeCCHHHHHHHHHHc--CCCeEEEEECCCCC--c---------cCeEEEecCChhhHHHHHHHHhh-------
Confidence 6899999999999999998888 62249999965333 2 246555 333 33333333221
Q ss_pred cCCCCcccceEEEEeecCC--CceEEEEE
Q 014588 121 TGPQGKIVSKVYLCEKLSL--VNEMYFAI 147 (422)
Q Consensus 121 ~~~~g~~~~~vlVee~i~~--g~El~vgv 147 (422)
-..+++|||++. +.++.+-+
T Consensus 199 -------~~~~ivQeyI~~~~~gDiRv~v 220 (338)
T PRK12458 199 -------DGYVIAQEYLPGAEEGDVRILL 220 (338)
T ss_pred -------CCCEEEEEcccCCCCCCEEEEE
Confidence 126899999973 34665554
No 107
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=94.59 E-value=0.21 Score=49.74 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=53.8
Q ss_pred HHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC--CHHHHHHHHHHHhcccc
Q 014588 39 MAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQIL 116 (422)
Q Consensus 39 L~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~--~~ee~~~a~~~l~~~~~ 116 (422)
+..+..++|++.+..+.+++.++.+.. | |+|+||..-++ |+ ||... +..++....+ .+...
T Consensus 127 ~~~~~~~vP~T~v~~~~~~~~~~~~~~--g--~vVvKPl~G~~--G~---------gv~~v~~~~~~~~~~~~-~~~~~- 189 (312)
T TIGR01380 127 TLQFPKVIPPTLVTRDKAEIRAFLAEH--G--DIVLKPLDGMG--GE---------GIFRLDPGDPNFNSILE-TMTQR- 189 (312)
T ss_pred HhhCcCCCCCEEEeCCHHHHHHHHHHc--C--CEEEEECCCCC--Cc---------eEEEEcCCCccHHHHHH-HHHhc-
Confidence 334555899999988999999999888 5 89999965332 33 35533 3323322222 22111
Q ss_pred cccccCCCCcccceEEEEeecC--CCceEEEEEEecC
Q 014588 117 VTKQTGPQGKIVSKVYLCEKLS--LVNEMYFAIMLDR 151 (422)
Q Consensus 117 ~~~~~~~~g~~~~~vlVee~i~--~g~El~vgv~~D~ 151 (422)
+ ...+++|+|++ .+.++.+-+..+.
T Consensus 190 --------~--~~~~~vQ~yI~~~~~~D~Rv~vv~g~ 216 (312)
T TIGR01380 190 --------G--REPVMAQRYLPEIKEGDKRILLIDGE 216 (312)
T ss_pred --------c--CCcEEEEeccccccCCCEEEEEECCe
Confidence 1 14699999997 3468877765443
No 108
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=94.38 E-value=0.067 Score=53.33 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=46.9
Q ss_pred ccccccchhHHhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCC
Q 014588 12 RSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk 85 (422)
|.+.++.+..+...-...=++..+..+|+++|||+|+++.+.+.+...+...+++.++.|||+||.. |+.|+
T Consensus 18 ~~~~~~~~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~--Gs~Gr 89 (317)
T TIGR02291 18 RNADYILRYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQ--GSGGK 89 (317)
T ss_pred chHHHHHhcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECC--CCCcc
Confidence 4445555554455555556788899999999999999988877654433333332121379999964 44455
No 109
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=94.33 E-value=0.034 Score=49.76 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHH
Q 014588 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~ 109 (422)
+++...++|++.|||+|........+ .. . +|+|+||..-.|| -|+.+. +.+++.....
T Consensus 3 dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~--~-~~~viKp~~G~Gg-----------~~i~~~~~~~~~~~~~~ 61 (161)
T PF02655_consen 3 DKLKTYKFLKELGIPVPTTLRDSEPE-------PI--D-GPWVIKPRDGAGG-----------EGIRIVDSEDELEEFLN 61 (161)
T ss_dssp SHHHHHHHHTTT-S--------EESS-----------S-SSEEEEESS------------------B--SS--TTE----
T ss_pred CHHHHHHHHHccCCCCCCcccccccc-------cc--C-CcEEEEeCCCCCC-----------CCeEEECCchhhccccc
Confidence 56788999999999999332221111 12 3 7999999632221 134444 5544332211
Q ss_pred HHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 110 ~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
...++|||++ |.++.+.+..+..
T Consensus 62 -------------------~~~i~Qe~i~-G~~~Sv~~l~~~~ 84 (161)
T PF02655_consen 62 -------------------KLRIVQEFIE-GEPYSVSFLASGG 84 (161)
T ss_dssp ----------------------EEEE----SEEEEEEEEE-SS
T ss_pred -------------------cceEEeeeeC-CEEeEEEEEEeCC
Confidence 1228999998 8999999988864
No 110
>PRK05246 glutathione synthetase; Provisional
Probab=94.20 E-value=0.33 Score=48.34 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC--CHHHHHHHHHHHhcccccccccC
Q 014588 45 NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVTKQTG 122 (422)
Q Consensus 45 pvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~--~~ee~~~a~~~l~~~~~~~~~~~ 122 (422)
++|++.+.++.+++.++.++. + |+|+||..-++ |+ ||.+. +..++....+.+. ..
T Consensus 134 ~vP~T~~~~~~~~~~~~~~~~--~--~vVlKP~~G~~--G~---------gV~~i~~~~~~~~~~~~~l~-~~------- 190 (316)
T PRK05246 134 LMPPTLVTRDKAEIRAFRAEH--G--DIILKPLDGMG--GA---------GIFRVKADDPNLGSILETLT-EH------- 190 (316)
T ss_pred cCCCEEEeCCHHHHHHHHHHC--C--CEEEEECCCCC--cc---------ceEEEeCCCccHHHHHHHHH-Hc-------
Confidence 789999999999999999888 4 99999965332 33 35544 3333332222221 11
Q ss_pred CCCcccceEEEEeecCC--CceEEEEEEe
Q 014588 123 PQGKIVSKVYLCEKLSL--VNEMYFAIML 149 (422)
Q Consensus 123 ~~g~~~~~vlVee~i~~--g~El~vgv~~ 149 (422)
+ -..+++|+|++. +.++.+-+..
T Consensus 191 --~--~~~~lvQ~~I~~~~~~D~Rv~vv~ 215 (316)
T PRK05246 191 --G--REPVMAQRYLPEIKEGDKRILLVD 215 (316)
T ss_pred --c--CCeEEEEeccccCCCCCEEEEEEC
Confidence 1 137999999964 4577776653
No 111
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=93.99 E-value=0.56 Score=52.27 Aligned_cols=115 Identities=11% Similarity=0.237 Sum_probs=76.9
Q ss_pred HHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcc
Q 014588 36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQ 114 (422)
Q Consensus 36 k~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~ 114 (422)
-++|...||.-|+|...+|.+||..+++.. | ||+.+.|...-. |- ..-+. +.++++...++...-
T Consensus 1038 S~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~V--g-YP~lvRPSYVLS--Ga---------AMnv~~~~~dl~~~L~~A~~v 1103 (1435)
T KOG0370|consen 1038 SRMLDSIGVDQPAWKELTSLEEAKKFAEKV--G-YPVLVRPSYVLS--GA---------AMNVVYSESDLKSYLEQASAV 1103 (1435)
T ss_pred HHHHHHcCCCchhhhhhccHHHHHHHHHhc--C-CceEecccceec--ch---------hhhhhhcHHHHHHHHHHHhhc
Confidence 378999999999999999999999999999 9 999999964321 11 12234 888888776665432
Q ss_pred cccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEE
Q 014588 115 ILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (422)
Q Consensus 115 ~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~ 180 (422)
+ + -..|.+.+|+...+|+-+-..-. . |-+++-.- .-.+|.-.-++-|..+
T Consensus 1104 s---~--------dhPVVisKfie~AkEidvDAVa~--~-G~~~~hai--SEHvEnAGVHSGDAtl 1153 (1435)
T KOG0370|consen 1104 S---P--------DHPVVISKFIEGAKEIDVDAVAS--D-GKVLVHAI--SEHVENAGVHSGDATL 1153 (1435)
T ss_pred C---C--------CCCEEhHHhhcccceechhhhcc--C-CeEEEEeh--hhhhhcccccCCceeE
Confidence 2 1 14789999999889976643221 1 44444331 1245554433445544
No 112
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=93.46 E-value=1.1 Score=44.62 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=74.1
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCCCCCe---ee-----ccCCCCHHHHHHHHHHHHcCC---CccEEEEEccCCCC-
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANF---LD-----VGGNASEGQVVEAFKILTSDE---KVKAILVNIFGGIM- 358 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~~~NP---lD-----l~g~~~~~~~~~al~~ll~d~---~vd~ilv~i~~~~~- 358 (422)
..+|||||...|.|+ -|.+.-..- .+| +. +=|.-.+..+.++++.+-+.+ .+|.|++.=+||..
T Consensus 14 p~~I~vITs~~gAa~--~D~~~~~~~--r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 14 PKRIAVITSPTGAAI--QDFLRTLKR--RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred CCEEEEEeCCchHHH--HHHHHHHHH--hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 459999999999887 576654332 333 22 234445667899999998776 79999986565532
Q ss_pred -----ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 359 -----KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 359 -----~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
+...+|++|.+ .+.||+...|-....-..+..... .++||..|+..++.
T Consensus 90 DL~~FN~e~varai~~------~~~PvisaIGHe~D~ti~D~vAd~-----ra~TPtaaAe~~~~ 143 (319)
T PF02601_consen 90 DLWAFNDEEVARAIAA------SPIPVISAIGHETDFTIADFVADL-----RAPTPTAAAELIVP 143 (319)
T ss_pred HhcccChHHHHHHHHh------CCCCEEEecCCCCCchHHHHHHHh-----hCCCHHHHHHHHhh
Confidence 34555665544 579998878765333334444444 45589998887654
No 113
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=91.83 E-value=4.4 Score=35.93 Aligned_cols=106 Identities=26% Similarity=0.383 Sum_probs=67.8
Q ss_pred HHHHHHHHCCCCCCCe--eeccCCCCHHHHHHHHHHHHcCCCccEEEE---EccCCCCC----hHHHHHHHHHHHHhcCC
Q 014588 306 ATMDIIKLHGGTPANF--LDVGGNASEGQVVEAFKILTSDEKVKAILV---NIFGGIMK----CDVIASGIVNAAKQVAL 376 (422)
Q Consensus 306 ~~~D~l~~~G~~~~NP--lDl~g~~~~~~~~~al~~ll~d~~vd~ilv---~i~~~~~~----~~~~a~~i~~~~~~~~~ 376 (422)
-+.|.+.+.|....|+ +.+.|.. . ..-+.+.|.+..++|+|+. .|-|++.. +.+.+++|.+..-+ .
T Consensus 33 gA~~~l~~~G~~~~~i~vv~VPGa~-E--iPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl~--~ 107 (152)
T COG0054 33 GAVDALKRHGADVDNIDVVRVPGAF-E--IPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLE--T 107 (152)
T ss_pred HHHHHHHHcCCCcccceEEEeCCcc-h--hHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHHh--h
Confidence 3558888888887755 3344432 2 3377788888888999996 23455443 45566777777655 6
Q ss_pred CCcEEEEeCCC-CHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 377 KVPVVVRLEGT-NVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 377 ~kpivv~~~g~-~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
++||....-++ +.++ .++.+|+. -=.--.+|+.+.+++++
T Consensus 108 ~~PV~~GVLt~~~~eq---A~~rag~~--~gnkG~~Aa~aAlem~~ 148 (152)
T COG0054 108 GVPVTFGVLTTDNIEQ---AIERAGTK--AGNKGAEAAEAALEMAN 148 (152)
T ss_pred CCCeEeeecCCCcHHH---HHHHhCcc--ccccHHHHHHHHHHHHH
Confidence 89998764444 4444 44455665 33345677777777654
No 114
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=90.76 E-value=7.7 Score=34.75 Aligned_cols=121 Identities=15% Similarity=0.194 Sum_probs=69.3
Q ss_pred eEEEEEc------CccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEE--E-ccCCCCCh---
Q 014588 293 EIGCMVN------GAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV--N-IFGGIMKC--- 360 (422)
Q Consensus 293 ~vaiitn------gGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv--~-i~~~~~~~--- 360 (422)
|++|+.. .-.+=--+.|.+..+|.+..|. |+---+-.--+.-+++.+++..++|+++. . +-|.+...
T Consensus 12 riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V 90 (158)
T PRK12419 12 RIAFIQARWHADIVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFV 90 (158)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHH
Confidence 5666542 2233344668888999865555 44322222335566677778788999997 2 33444443
Q ss_pred -HHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHH--HHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 361 -DVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGK--RILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 361 -~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~--~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
..++++|.+..-+ .++||... +..++.+++. ..+.+.|.- .--.+|+++.++.+
T Consensus 91 ~~~v~~gl~~vsl~--~~~PV~fGVLT~~~~eqA~~rqa~~Ra~~~----nKG~eaA~aalem~ 148 (158)
T PRK12419 91 AQAVIDGLMRVQLD--TEVPVFSVVLTPHHFHESEEHHDFFRAHFV----VKGAEAAHACADTL 148 (158)
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEecCCCcHHHHHHHHHHhhcCcc----ccHHHHHHHHHHHH
Confidence 4455566555433 68999876 4444445333 334445432 44556666666554
No 115
>PRK06091 membrane protein FdrA; Validated
Probab=90.73 E-value=8.1 Score=41.38 Aligned_cols=173 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred eeeEEecCCcEEEEeeEEeeCCCccccchhhcccCCCCCC-CHHHHHHhh--cCCceecCCC-eE-EEEEcCccHHHHHH
Q 014588 234 NPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQE-DPREVAAAK--ADLNYIGLDG-EI-GCMVNGAGLAMATM 308 (422)
Q Consensus 234 NPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~~~~~~~~~-~~~e~~a~~--~~~~~~~~~g-~v-aiitngGG~gv~~~ 308 (422)
-|+++..-|+ ....-||.|+++..+.+|. +.....+.- .....-.+.+ .| |.. .||=++--++
T Consensus 280 KPVVvlk~Gr-----------s~~g~~q~GVi~a~tleEl~~~A~~la~~~~~~~~~~~~~~~~irGly-~GGTL~~Ea~ 347 (555)
T PRK06091 280 KPVVALFLGY-----------TPAVARDENVWFASTLDEAARLACLLSRVTAQRNAILPVSQGFICGLY-TGGTLAAEAA 347 (555)
T ss_pred CCEEEEEecC-----------CchhhhcCCeEEeCCHHHHHHHHHHHhcccccccccccccCCeeEEEe-cCchHHHHHH
Confidence 4888776662 1222288999888775442 111111100 0001111222 34 444 4555777777
Q ss_pred HHHHHCCCC----------------CCCeeeccCCCCHH--------H--HHHHHHHHHcCCCccEEEEEccCCCC----
Q 014588 309 DIIKLHGGT----------------PANFLDVGGNASEG--------Q--VVEAFKILTSDEKVKAILVNIFGGIM---- 358 (422)
Q Consensus 309 D~l~~~G~~----------------~~NPlDl~g~~~~~--------~--~~~al~~ll~d~~vd~ilv~i~~~~~---- 358 (422)
++....+. -.-.+|+|-+.... + =-+-+....+||++..||+-+.-|..
T Consensus 348 -~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~VillD~vlGyGah~d 426 (555)
T PRK06091 348 -GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATAD 426 (555)
T ss_pred -HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceEEEEEeeeccCCCCC
Confidence 66333331 13458998765432 1 12445555689999999984332222
Q ss_pred ChHHHHHHHHHHHH--hcCCCCcEEEEeCCC-----CHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 359 KCDVIASGIVNAAK--QVALKVPVVVRLEGT-----NVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 359 ~~~~~a~~i~~~~~--~~~~~kpivv~~~g~-----~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
....++.+|.++.. ..+++.++++...|+ +.++-.+.|+++|+- +++|-.+|++...++.+
T Consensus 427 pa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~DpQ~~~~q~~~L~~aGv~--v~~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 427 PAGSLVSAIQKACAARADGQPLYAIATVTGTERDPQCRSQQIATLEDAGIA--VVDSLPEATLLAAALIR 494 (555)
T ss_pred hHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCCCcCHHHHHHHHHhCCeE--EEcCcHHHHHHHHHHhh
Confidence 23445566655531 111234445444443 244567799999999 99999999999888764
No 116
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.73 E-value=1.2 Score=40.53 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=37.5
Q ss_pred CCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC--CHHHHHHHHHHHhcccccccccCC
Q 014588 46 VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVTKQTGP 123 (422)
Q Consensus 46 vp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~--~~ee~~~a~~~l~~~~~~~~~~~~ 123 (422)
+|++.+.++.+++.++.++. + . +|+||....|| + ||... +.......++.+....
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~--~-~-~VlKPl~g~gG--~---------gV~~i~~~~~n~~~i~e~~~~~~-------- 68 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEH--G-D-IVLKPLDGMGG--R---------GVFRISRDDPNLNSILETLTKNG-------- 68 (173)
T ss_dssp S--EEEES-HHHHHHHHHHH--S-S-EEEEESS--TT--T---------T-EEE-TT-TTHHHHHHHHTTTT--------
T ss_pred CcCEEEECCHHHHHHHHHHC--C-C-EEEEECCCCCC--c---------CEEEEcCCCCCHHHHHHHHHhcC--------
Confidence 58999999999999999998 7 4 99999765543 3 24333 4333444444443221
Q ss_pred CCcccceEEEEeecC
Q 014588 124 QGKIVSKVYLCEKLS 138 (422)
Q Consensus 124 ~g~~~~~vlVee~i~ 138 (422)
-..+++|+|++
T Consensus 69 ----~~~~mvQ~flp 79 (173)
T PF02955_consen 69 ----ERPVMVQPFLP 79 (173)
T ss_dssp ----TS-EEEEE--G
T ss_pred ----CccEEEEeccc
Confidence 24799999997
No 117
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=89.60 E-value=3.4 Score=43.07 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=70.3
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCC-CC-C----eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC------
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGT-PA-N----FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM------ 358 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~-~~-N----PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~------ 358 (422)
..+|||||...|.++- |.+.-..-. |. + |.=+=|.-.+..+..+++.+-..+++|.|++.=.||..
T Consensus 129 p~~i~vits~~~aa~~--D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 129 PKRVGVITSQTGAALA--DILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred CCEEEEEeCCccHHHH--HHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 5599999999998875 666543322 22 2 22233555556688999888877789999986555533
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHH
Q 014588 359 KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKA 416 (422)
Q Consensus 359 ~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al 416 (422)
+.+.++++| .. .+.||+...|-.......+..... -++||..|+..+
T Consensus 207 n~e~~~rai----~~--~~~Pvis~iGHe~D~ti~D~vAd~-----ra~TPtaaae~~ 253 (432)
T TIGR00237 207 NDEKVARAI----FL--SKIPIISAVGHETDFTISDFVADL-----RAPTPSAAAEIV 253 (432)
T ss_pred CcHHHHHHH----Hc--CCCCEEEecCcCCCccHHHHhhhc-----cCCCcHHHHHHh
Confidence 234445544 33 589999877765322233333333 345888887765
No 118
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=88.10 E-value=1.5 Score=43.61 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=50.1
Q ss_pred ceEEEEeecCCCceEEEEEEecCCCCCceeeecc--CCCceeeeccccCCCeEEEEecCCCCC-CC---HHHHHHHHHhC
Q 014588 129 SKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCS--KGGTSIEDLAEKYPNMIVKVPIDVFNG-IT---DEDAAKVVDGL 202 (422)
Q Consensus 129 ~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~--~GGi~iE~~~d~~~d~~~~~~i~p~~~-l~---~~~a~~l~~~l 202 (422)
.+++.|+|++ |+-+.+.+..+.+- --++.+.. .||..-+... .++.=-+.|... .. ...|.+++.+|
T Consensus 176 ~~~i~Qefi~-G~p~Svs~is~g~~-a~~la~N~QiI~~~~~~~~~-----f~Y~GNlTP~~~~~~ee~e~la~elV~~l 248 (389)
T COG2232 176 PGFIFQEFIE-GRPVSVSFISNGSD-ALTLAVNDQIIDGLRGEYSQ-----FVYKGNLTPFPYEEVEEAERLAEELVEEL 248 (389)
T ss_pred cceehhhhcC-CceeEEEEEecCcc-eEEEEEeeeeeccccccccc-----ceeccCcCCCcchhhHHHHHHHHHHHHHh
Confidence 5899999999 88999999888654 34444442 1222211110 111101122110 11 12344456666
Q ss_pred CCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEE
Q 014588 203 APKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAE 238 (422)
Q Consensus 203 g~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v 238 (422)
|+.+.+--. -++.|+....+||||.+.
T Consensus 249 gL~GsnGVD---------fvl~d~gpyViEVNPR~q 275 (389)
T COG2232 249 GLVGSNGVD---------FVLNDKGPYVIEVNPRIQ 275 (389)
T ss_pred ccccccccc---------eEeecCCcEEEEecCccc
Confidence 765543211 235677788999999765
No 119
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.04 E-value=14 Score=32.19 Aligned_cols=104 Identities=18% Similarity=0.280 Sum_probs=67.2
Q ss_pred HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCC-CCcEEEEe
Q 014588 306 ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL-KVPVVVRL 384 (422)
Q Consensus 306 ~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~-~kpivv~~ 384 (422)
+.+-+++..|..+ +|++.+.+.+.+.++.. ..+.|.|.+.+..+ .....+..+++.+++.+. +.+|++
T Consensus 22 iv~~~lr~~G~eV---i~LG~~vp~e~i~~~a~----~~~~d~V~lS~~~~--~~~~~~~~~~~~L~~~~~~~~~i~v-- 90 (137)
T PRK02261 22 ILDRALTEAGFEV---INLGVMTSQEEFIDAAI----ETDADAILVSSLYG--HGEIDCRGLREKCIEAGLGDILLYV-- 90 (137)
T ss_pred HHHHHHHHCCCEE---EECCCCCCHHHHHHHHH----HcCCCEEEEcCccc--cCHHHHHHHHHHHHhcCCCCCeEEE--
Confidence 4456777777664 78999998887666653 24677877744333 344556777777776533 333433
Q ss_pred CCC------CHHHHHHHHHHcCCCccccc---CHHHHHHHHHHHhh
Q 014588 385 EGT------NVDQGKRILKESGMTLITAE---DLDDAAEKAVKAIA 421 (422)
Q Consensus 385 ~g~------~~~~~~~~L~~~Gip~~vf~---~~e~Av~al~~~~~ 421 (422)
||. ...+..+.+++.|+- .+|+ ++++.+..+.+.++
T Consensus 91 GG~~~~~~~~~~~~~~~l~~~G~~-~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 91 GGNLVVGKHDFEEVEKKFKEMGFD-RVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred ECCCCCCccChHHHHHHHHHcCCC-EEECcCCCHHHHHHHHHHHhc
Confidence 332 245567789999973 4777 78888877776654
No 120
>PRK10949 protease 4; Provisional
Probab=87.13 E-value=1.6 Score=47.59 Aligned_cols=78 Identities=28% Similarity=0.411 Sum_probs=54.8
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEE--EccCCCC-ChHHHHHHH
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV--NIFGGIM-KCDVIASGI 367 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv--~i~~~~~-~~~~~a~~i 367 (422)
+++||||+..|-..- |-. -.|....+.+.+.++...+||+|++|++ +.+|+.. .++++.+.|
T Consensus 325 ~~~Iavi~~~G~I~~---------g~~------~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i 389 (618)
T PRK10949 325 GGSIAVIFANGAIMD---------GEE------TPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAEL 389 (618)
T ss_pred CCeEEEEEEEEEEcC---------CCC------cCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHH
Confidence 458999988885411 111 1245566889999999999999999998 5565543 567777777
Q ss_pred HHHHHhcCCCCcEEEEeCC
Q 014588 368 VNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 368 ~~~~~~~~~~kpivv~~~g 386 (422)
.++. + .+|||++.+++
T Consensus 390 ~~~r-~--~gKPVvas~~~ 405 (618)
T PRK10949 390 AAAR-A--AGKPVVVSMGG 405 (618)
T ss_pred HHHH-h--cCCcEEEEECC
Confidence 6653 3 47999987654
No 121
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=86.68 E-value=1.7 Score=42.69 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=38.2
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCeee-----------eCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCC
Q 014588 26 RRLNIHEYQGAELMAKYGINVPKGLA-----------VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85 (422)
Q Consensus 26 ~~~~L~e~~ak~lL~~~GIpvp~~~~-----------~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk 85 (422)
....-++...++++.++|||+|+... ..+.+++.+..... ...++|+||.. |..||
T Consensus 21 ~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~viKP~~--G~~G~ 87 (285)
T PF14397_consen 21 YPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKH--APDRFVIKPAN--GSGGK 87 (285)
T ss_pred ccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhc--cCCcEEEEeCC--CCCcc
Confidence 34556688899999999999999321 23556777776553 22689999964 33355
No 122
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=86.38 E-value=18 Score=31.73 Aligned_cols=118 Identities=24% Similarity=0.273 Sum_probs=66.2
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEE--E-ccCCCCC----
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV--N-IFGGIMK---- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv--~-i~~~~~~---- 359 (422)
||+|+... -.+=--+.|.+..+|.+..|. |+--=+-.--+.-+++.+++..++|+++. . +-|.+..
T Consensus 9 ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i-~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V 87 (141)
T PLN02404 9 RFGVVVARFNEIITKNLLEGALETFKRYSVKEENI-DVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAV 87 (141)
T ss_pred EEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccce-EEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHH
Confidence 56665432 233444567888888765443 22111112234566677777788999997 2 3344443
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 360 CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
|..++++|.+..-+ .++||... +..++.+++ +.++|.. .-.--.+|+++.++
T Consensus 88 ~~~v~~gl~~vsl~--~~~PV~~GVLt~~~~eQA---~~Rag~~--~~nkG~eaA~aale 140 (141)
T PLN02404 88 ANSAASGVLSAGLN--SGVPCIFGVLTCDDMEQA---LNRAGGK--AGNKGAEAALTAVE 140 (141)
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEEcCCCCHHHH---HHHhCCc--ccCcHHHHHHHHHh
Confidence 44455666665444 68999876 444445444 3445544 33445566666554
No 123
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=85.80 E-value=25 Score=31.31 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=71.2
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEE--c-cCCCCC----
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN--I-FGGIMK---- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~--i-~~~~~~---- 359 (422)
||+|+... ..+---+.+.+..+|.+..|.--++ -+-.--..-+++.+++..++|+++.. + -|.+..
T Consensus 14 riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~-VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V 92 (154)
T PRK00061 14 RIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVR-VPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDYV 92 (154)
T ss_pred EEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEE-CCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHH
Confidence 77777642 2344456678888887655543332 23333466777778887889999972 2 344443
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 360 CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
|..++++|.+..-+ .++||... +...+.+++..+ .|.- ...--.+|+++.++++
T Consensus 93 ~~~v~~gl~~v~l~--~~~PV~~GVLt~~~~eQa~~R---~~~~--~~nkG~eaa~aal~m~ 147 (154)
T PRK00061 93 ANEVAKGLADVSLE--TGVPVGFGVLTTDTIEQAIER---AGTK--AGNKGAEAALAALEMA 147 (154)
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEecCCCCHHHHHHH---hCcc--ccccHHHHHHHHHHHH
Confidence 34455666665433 68999976 444455555443 3322 3344566777766654
No 124
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=85.43 E-value=5.4 Score=35.13 Aligned_cols=121 Identities=19% Similarity=0.268 Sum_probs=72.7
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEE--c-cCCCCC----
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN--I-FGGIMK---- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~--i-~~~~~~---- 359 (422)
||+|+..- ..+---+.|.+..+|.+..|.--++- +..-.+.-+++.+++..++|++++. + -|.+..
T Consensus 5 ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~V-PGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v 83 (144)
T PF00885_consen 5 RIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRV-PGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYV 83 (144)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEE-SSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHH
T ss_pred EEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEc-CCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHH
Confidence 55555432 22333466888888887665543331 1122356778888888899999972 3 344443
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 360 CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
++.+++++.+..-+ .++||... +..++.+++ +.+.|.- ..+--.+|+++++++++
T Consensus 84 ~~~v~~gl~~lsl~--~~~PV~~gvlt~~~~eqa---~~R~~~~--~~nkG~eaA~aal~m~~ 139 (144)
T PF00885_consen 84 ANAVSRGLMDLSLE--YGIPVIFGVLTPDTEEQA---LERAGGK--AGNKGREAAEAALEMAK 139 (144)
T ss_dssp HHHHHHHHHHHHHH--HTSEEEEEEEEESSHHHH---HHHCEET--TEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCccEEEEecCCCCHHHH---HHHhcch--hhhhHHHHHHHHHHHHH
Confidence 34455666666434 48999875 444445554 4445554 56777888888887764
No 125
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=85.02 E-value=38 Score=32.71 Aligned_cols=186 Identities=12% Similarity=0.180 Sum_probs=102.0
Q ss_pred cCCCHHHHHHHHHHcC-CC--CCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCcc-CCCcceEEEC----
Q 014588 28 LNIHEYQGAELMAKYG-IN--VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK-SGLKGGVHIV---- 99 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~G-Ip--vp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~-s~~~GGV~l~---- 99 (422)
..+++++..++|..+. +. .|++.++++.+++.+..... + -|.+||.. |.+|+++.+ .-.-++..+.
T Consensus 15 ~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y--~--~vylKP~~--Gs~G~gI~ri~~~~~~~~~~~~~~ 88 (262)
T PF14398_consen 15 GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKY--K--SVYLKPDN--GSKGKGIIRIEKKGGGYRIQYRNK 88 (262)
T ss_pred CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHC--C--EEEEEeCC--CCCCccEEEEEEeCCEEEEEEccC
Confidence 3477888888888864 43 69999999999999998887 3 79999975 555676633 1001233322
Q ss_pred ---------CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecC----CC--ceEEEEEEecCCC----CCceeee
Q 014588 100 ---------KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS----LV--NEMYFAIMLDRKT----AGPIIIG 160 (422)
Q Consensus 100 ---------~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~----~g--~El~vgv~~D~~f----~gpvi~~ 160 (422)
+.+++.....+.+.. ..++||+.++ .| ..+.|-+..|... .|-++=+
T Consensus 89 ~~~~~~~~~~~~~l~~~l~~~~~~--------------~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg~~~Rv 154 (262)
T PF14398_consen 89 KKNVRRTFSSLEELEQFLKELLGK--------------RRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQVTGIVARV 154 (262)
T ss_pred CceeEEEeCCHHHHHHHHHHhcCC--------------CcEEEeCCccccccCCCeEEEEEEEEECCCCCEEEEEEEEEE
Confidence 445555555544322 3688888884 22 3667777776531 0122222
Q ss_pred ccCCCceeeeccccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcC-C--CcEEeeeeeE
Q 014588 161 CSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES-D--CTLLEINPLA 237 (422)
Q Consensus 161 g~~GGi~iE~~~d~~~d~~~~~~i~p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~-~--~~~lEiNPl~ 237 (422)
|..|++-+.. + .|=+.....+++....-.....+.+.++...+.+.+... + +-|+=|+ +.
T Consensus 155 a~~~~ivTN~--------------~--~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiD-l~ 217 (262)
T PF14398_consen 155 AKPGSIVTNL--------------S--QGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGID-LG 217 (262)
T ss_pred cCCCCceecc--------------C--CCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-EE
Confidence 2222221111 0 110001111222211112233455666666666665543 2 3465555 78
Q ss_pred EecCCcEEEEeeE
Q 014588 238 ETSGKQLVAADAK 250 (422)
Q Consensus 238 v~~~g~~~alDa~ 250 (422)
++.+|+++.+.+-
T Consensus 218 iD~~g~iWliEvN 230 (262)
T PF14398_consen 218 IDKNGKIWLIEVN 230 (262)
T ss_pred EcCCCCEEEEEEe
Confidence 8889999888773
No 126
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=84.73 E-value=8.5 Score=40.10 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=68.0
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCC-CCCeeec-----cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC------
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGT-PANFLDV-----GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM------ 358 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~-~~NPlDl-----~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~------ 358 (422)
..+|||||...|.|+ -|.+.-..-. |.--+.+ =|.-.+..+.++++.+-..+ +|.|++.=.||..
T Consensus 135 p~~I~viTs~~gAa~--~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~-~Dviii~RGGGS~eDL~~F 211 (438)
T PRK00286 135 PKRIGVITSPTGAAI--RDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARG-EDVLIVARGGGSLEDLWAF 211 (438)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCC-CCEEEEecCCCCHHHhhcc
Confidence 459999999999885 4776654432 1111222 24444556888888876544 8999986565532
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHH
Q 014588 359 KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAV 417 (422)
Q Consensus 359 ~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~ 417 (422)
+...++++|.+ .+.||+...|-....-..+..... -++||..|+..++
T Consensus 212 n~e~v~~ai~~------~~~Pvis~IGHE~D~tl~D~vAd~-----ra~TPtaaae~~~ 259 (438)
T PRK00286 212 NDEAVARAIAA------SRIPVISAVGHETDFTIADFVADL-----RAPTPTAAAELAV 259 (438)
T ss_pred CcHHHHHHHHc------CCCCEEEeccCCCCccHHHHhhhc-----cCCChHHHHHHhC
Confidence 33444555433 589998877765322233333333 3558888887653
No 127
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=84.62 E-value=28 Score=30.89 Aligned_cols=109 Identities=10% Similarity=0.048 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEE---ccCCCC--ChHHHHHHHHHHHHhcCCC
Q 014588 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN---IFGGIM--KCDVIASGIVNAAKQVALK 377 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~---i~~~~~--~~~~~a~~i~~~~~~~~~~ 377 (422)
++.-+.|.+..+| .-.+ +++---+-...+.-+++.+.++.++|+++.. +-+... +.-+++++|.+..-+ .+
T Consensus 14 M~~gA~~~L~~~g-~g~~-i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG~VIrGeT~Hfd~V~vs~GL~~lsl~--~~ 89 (151)
T TIGR01506 14 MGGAAIDELRKHT-AGIK-IIRRTVPGIKDLPVAAKKLLEEEGCEMVITLGWVGPEEKDKLSYHEASTGLIQVQLM--TN 89 (151)
T ss_pred HHHHHHHHHHhcC-CCCe-EEEEECCcHhHHHHHHHHHHhcCCCCEEEEeceEEcCCCCcEeHHHHHHHHHHHHhh--hC
Confidence 3455678888864 2233 5543333344466777777777789999972 333333 223567888877655 68
Q ss_pred CcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 378 VPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 378 kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
+||...+--++.+++.+ ++|.. .-+--.+|+.++++++
T Consensus 90 ~PVi~VlT~e~eeQA~~---Rag~~--~~nkG~eaA~aaleMi 127 (151)
T TIGR01506 90 KHVIDVTVHEDEAEDPE---ELKVL--ADNRAREHAQNLIMLL 127 (151)
T ss_pred CCEEEEEeeCCHHHHHH---Hhccc--ccChHHHHHHHHHHHH
Confidence 99987544444555444 44554 5555667777766654
No 128
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=83.88 E-value=7.5 Score=35.08 Aligned_cols=62 Identities=29% Similarity=0.304 Sum_probs=40.8
Q ss_pred eccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCC---hHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 323 DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMK---CDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 323 Dl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~---~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
|..+..+.+.+.++++.+.+||++++|++.+...... ..++.+ +++..+. .+|||++...|.
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~-~i~~~~~--~~kpVia~v~G~ 81 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA-ELAAARA--AGKPVVASGGGN 81 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHH-HHHHHHh--CCCCEEEEECCc
Confidence 5566677788999999999999999999854322122 122222 2222333 589999887665
No 129
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=83.83 E-value=11 Score=32.72 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=64.0
Q ss_pred HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 305 MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 305 v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
-+.+.+++..|..+ +|++...+++.+.++. .+ .+.|.|.++... +...+....+++.+++.+.+. +.+..
T Consensus 20 ~iv~~~l~~~GfeV---i~lg~~~s~e~~v~aa---~e-~~adii~iSsl~--~~~~~~~~~~~~~L~~~g~~~-i~viv 89 (132)
T TIGR00640 20 KVIATAYADLGFDV---DVGPLFQTPEEIARQA---VE-ADVHVVGVSSLA--GGHLTLVPALRKELDKLGRPD-ILVVV 89 (132)
T ss_pred HHHHHHHHhCCcEE---EECCCCCCHHHHHHHH---HH-cCCCEEEEcCch--hhhHHHHHHHHHHHHhcCCCC-CEEEE
Confidence 34566777777764 6888888888654444 23 467777764332 234556778888877743322 33345
Q ss_pred CCCCHHHHHHHHHHcCCC--cccccCHHHHHHHHHH
Q 014588 385 EGTNVDQGKRILKESGMT--LITAEDLDDAAEKAVK 418 (422)
Q Consensus 385 ~g~~~~~~~~~L~~~Gip--~~vf~~~e~Av~al~~ 418 (422)
||....+..+.|++.|+- ++.=.++++.+..+..
T Consensus 90 GG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 90 GGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred eCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 665455556789999984 1133356776666655
No 130
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=83.75 E-value=4.2 Score=40.63 Aligned_cols=56 Identities=27% Similarity=0.421 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEE--EccCCCC-ChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 327 NASEGQVVEAFKILTSDEKVKAILV--NIFGGIM-KCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 327 ~~~~~~~~~al~~ll~d~~vd~ilv--~i~~~~~-~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
..+.+.+.+.++.+..||++++|++ |.+||.. ....+++.|.+..++ +|+++.+++
T Consensus 79 ~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~----~PV~v~v~~ 137 (317)
T COG0616 79 FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAK----KPVVVSVGG 137 (317)
T ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhc----CCEEEEECC
Confidence 5677889999999999999999987 6777755 456667776665443 388876544
No 131
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=83.64 E-value=30 Score=30.30 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=62.1
Q ss_pred HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEE--Ec-cCCCCC----hHHHHHHHHHHHHhcCCC
Q 014588 305 MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV--NI-FGGIMK----CDVIASGIVNAAKQVALK 377 (422)
Q Consensus 305 v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv--~i-~~~~~~----~~~~a~~i~~~~~~~~~~ 377 (422)
--+.+.+..+|....|---+. -+-.--..-+++.+++..++|+++. .+ =|.+.. |+.++++|.+..-+ .+
T Consensus 20 ~ga~~~l~~~g~~~~~i~v~~-VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~sl~--~~ 96 (138)
T TIGR00114 20 KGAIDALKRLGAEVDNIDVIW-VPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYVADEAAKGIADLALD--YD 96 (138)
T ss_pred HHHHHHHHHcCCCccceEEEE-CCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHHhh--hC
Confidence 345678888887655432221 1222235566777777788999997 22 344443 34455666665444 58
Q ss_pred CcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 378 VPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 378 kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
+||... +..++.+++. .++|.- .-.--.+|+.++++.++
T Consensus 97 ~PV~~GvLt~~~~eQa~---~R~~~~--~~nkG~eaA~aal~m~~ 136 (138)
T TIGR00114 97 KPVIFGILTTGTIEQAI---ERAGDK--AGNKGVEAAVAALEMAK 136 (138)
T ss_pred CCEEEEecCCCCHHHHH---HHcccc--ccccHHHHHHHHHHHHh
Confidence 999976 4443444433 344422 22445667777666654
No 132
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=83.49 E-value=26 Score=30.22 Aligned_cols=98 Identities=16% Similarity=0.243 Sum_probs=60.7
Q ss_pred HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCC-CCcEEEEeC
Q 014588 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL-KVPVVVRLE 385 (422)
Q Consensus 307 ~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~-~kpivv~~~ 385 (422)
.+-+++.+|.++ +|++-+.+++.+.++. .+ .+.|.|.+....+. +....+.+++.+++.+. +.||++ |
T Consensus 19 v~~~L~~~GfeV---idLG~~v~~e~~v~aa---~~-~~adiVglS~L~t~--~~~~~~~~~~~l~~~gl~~v~viv--G 87 (128)
T cd02072 19 LDHAFTEAGFNV---VNLGVLSPQEEFIDAA---IE-TDADAILVSSLYGH--GEIDCKGLREKCDEAGLKDILLYV--G 87 (128)
T ss_pred HHHHHHHCCCEE---EECCCCCCHHHHHHHH---HH-cCCCEEEEeccccC--CHHHHHHHHHHHHHCCCCCCeEEE--E
Confidence 345788888764 7999999988765554 22 36778777544332 34455666677776543 444444 3
Q ss_pred CC------CHHHHHHHHHHcCCCccccc---CHHHHHHHH
Q 014588 386 GT------NVDQGKRILKESGMTLITAE---DLDDAAEKA 416 (422)
Q Consensus 386 g~------~~~~~~~~L~~~Gip~~vf~---~~e~Av~al 416 (422)
|. ..++..+.|++.|+- .+|. ++++.+..+
T Consensus 88 G~~~i~~~d~~~~~~~L~~~Gv~-~vf~pgt~~~~i~~~l 126 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFD-RVFAPGTPPEEAIADL 126 (128)
T ss_pred CCCCCChhhhHHHHHHHHHcCCC-EEECcCCCHHHHHHHH
Confidence 32 123355789999993 4777 677666543
No 133
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=81.91 E-value=3.4 Score=27.57 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhH
Q 014588 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD 64 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~ 64 (422)
++.+-++.|..+||++|+.. .+-+|+.+.++.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~--~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA--KTRDELLKLAKK 36 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHH
Confidence 56688999999999999987 688899888765
No 134
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=80.59 E-value=4.3 Score=44.03 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=50.9
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEE--ccCCCC-ChHHHHHHH
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN--IFGGIM-KCDVIASGI 367 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~--i~~~~~-~~~~~a~~i 367 (422)
+++|++|+-.|-..- | .++ .+....+.+.+.++.+.+||+|++|++. .+|+.. .++.+.+.|
T Consensus 307 ~~~vavI~~~G~I~~---------~---~~~---~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i 371 (584)
T TIGR00705 307 QDKIGIVHLEGPIAD---------G---RDT---EGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRREL 371 (584)
T ss_pred CCeEEEEEEEEEEcC---------C---CCc---ccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHH
Confidence 458999987774310 0 011 1233456788999999999999999984 466533 345555555
Q ss_pred HHHHHhcCCCCcEEEEeCC
Q 014588 368 VNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 368 ~~~~~~~~~~kpivv~~~g 386 (422)
.++. + .+|||++.++|
T Consensus 372 ~~~~-~--~gKPVva~~~g 387 (584)
T TIGR00705 372 ARAQ-A--RGKPVIVSMGA 387 (584)
T ss_pred HHHH-h--CCCcEEEEECC
Confidence 5443 3 36999987765
No 135
>PLN02775 Probable dihydrodipicolinate reductase
Probab=80.14 E-value=27 Score=34.34 Aligned_cols=121 Identities=12% Similarity=0.039 Sum_probs=74.4
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCCCeeec-----------cCC-CC---HHHHHHHHHHHHcCCCccEEEEEccCCC
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDV-----------GGN-AS---EGQVVEAFKILTSDEKVKAILVNIFGGI 357 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl-----------~g~-~~---~~~~~~al~~ll~d~~vd~ilv~i~~~~ 357 (422)
+|+|....|=+|-.++.++...++.+.--+|. .|. .. +.....+++.+.++ ..|.++|-+..
T Consensus 13 ~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~-~~~~VvIDFT~-- 89 (286)
T PLN02775 13 PIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE-YPNLIVVDYTL-- 89 (286)
T ss_pred eEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc-CCCEEEEECCC--
Confidence 88999999999999999999888754333332 221 00 13355666444332 45666664331
Q ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 358 MKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 358 ~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
.......++.+.+ .++|+|+...|-..++-.+..++.++|+..-+++.--+..+.++++
T Consensus 90 ---P~a~~~~~~~~~~--~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~ 148 (286)
T PLN02775 90 ---PDAVNDNAELYCK--NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAME 148 (286)
T ss_pred ---hHHHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 3344555666555 5899998865654444444445568996666666666666666654
No 136
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.83 E-value=29 Score=28.84 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=59.5
Q ss_pred HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 305 MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 305 v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
.+.++.++..|.++ ++++.+.+.+.+.+++. .-+.|.|.+... .......+..+++.+++..++. +.+.+
T Consensus 17 ~~~~~~l~~~G~~V---~~lg~~~~~~~l~~~~~----~~~pdvV~iS~~--~~~~~~~~~~~i~~l~~~~~~~-~~i~v 86 (119)
T cd02067 17 NIVARALRDAGFEV---IDLGVDVPPEEIVEAAK----EEDADAIGLSGL--LTTHMTLMKEVIEELKEAGLDD-IPVLV 86 (119)
T ss_pred HHHHHHHHHCCCEE---EECCCCCCHHHHHHHHH----HcCCCEEEEecc--ccccHHHHHHHHHHHHHcCCCC-CeEEE
Confidence 46678888888776 88888888775555543 235666665333 2233456677777777743312 33344
Q ss_pred CCCCHHHHHHHHHHcCCCcccccCHHHHHHHH
Q 014588 385 EGTNVDQGKRILKESGMTLITAEDLDDAAEKA 416 (422)
Q Consensus 385 ~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al 416 (422)
+|......-+.+++.|+- .+|.+..++++.+
T Consensus 87 GG~~~~~~~~~~~~~G~D-~~~~~~~~~~~~~ 117 (119)
T cd02067 87 GGAIVTRDFKFLKEIGVD-AYFGPATEAVEVL 117 (119)
T ss_pred ECCCCChhHHHHHHcCCe-EEECCHHHHHHHH
Confidence 554222223578888985 3455555666544
No 137
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=77.63 E-value=38 Score=33.16 Aligned_cols=101 Identities=12% Similarity=0.174 Sum_probs=59.8
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC-C--ChHHHHHHHHHH-HHhcCCCCcEEEEeCCCCHHHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI-M--KCDVIASGIVNA-AKQVALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~-~--~~~~~a~~i~~~-~~~~~~~kpivv~~~g~~~~~~~~ 394 (422)
--|.|=-|..+.+.+.+-++.+++..++++|+++-..|- . ..++- ..+++. .+..+...||++..+.....++.+
T Consensus 12 ~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr-~~~~~~~~~~~~~~~~viagvg~~~t~~ai~ 90 (293)
T PRK04147 12 LTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEK-KQVLEIVAEEAKGKVKLIAQVGSVNTAEAQE 90 (293)
T ss_pred ECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHH-HHHHHHHHHHhCCCCCEEecCCCCCHHHHHH
Confidence 356777788999999999999987679999998543332 1 22222 222332 222223578888776655555544
Q ss_pred ---HHHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 395 ---ILKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 395 ---~L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
..++.|+ |++.-.+.++-++-+.+++
T Consensus 91 ~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 91 LAKYATELGYDAISAVTPFYYPFSFEEICDYYREII 126 (293)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHH
Confidence 4556675 7332234455555555444
No 138
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=77.43 E-value=25 Score=29.67 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=55.1
Q ss_pred HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 305 MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 305 v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
.+.+..++..|.++ ++++.+.+.+.+.++.. +-+.|.|.++.. .......++.+++.+++...++ +.+..
T Consensus 17 ~~~~~~l~~~G~~v---i~lG~~vp~e~~~~~a~----~~~~d~V~iS~~--~~~~~~~~~~~~~~L~~~~~~~-i~i~~ 86 (122)
T cd02071 17 KVIARALRDAGFEV---IYTGLRQTPEEIVEAAI----QEDVDVIGLSSL--SGGHMTLFPEVIELLRELGAGD-ILVVG 86 (122)
T ss_pred HHHHHHHHHCCCEE---EECCCCCCHHHHHHHHH----HcCCCEEEEccc--chhhHHHHHHHHHHHHhcCCCC-CEEEE
Confidence 45667777777653 68888888776555543 235667765333 2334556778888777743333 33445
Q ss_pred CCCCHHHHHHHHHHcCCC
Q 014588 385 EGTNVDQGKRILKESGMT 402 (422)
Q Consensus 385 ~g~~~~~~~~~L~~~Gip 402 (422)
+|....+....+.+.|+-
T Consensus 87 GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 87 GGIIPPEDYELLKEMGVA 104 (122)
T ss_pred ECCCCHHHHHHHHHCCCC
Confidence 655455667789999985
No 139
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=76.18 E-value=49 Score=31.96 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=60.7
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHH-HHhcCCCCcEEEEeCCCCHHHHHH-
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNA-AKQVALKVPVVVRLEGTNVDQGKR- 394 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~-~~~~~~~kpivv~~~g~~~~~~~~- 394 (422)
-|.|=.|..+.+.+.+-++.+.+. ++++++++-..|-. ..++- ..+++. .+..+.+.||++..++....++.+
T Consensus 7 TPf~~dg~iD~~~~~~~i~~l~~~-Gv~gi~~~GstGE~~~ls~~Er-~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~ 84 (281)
T cd00408 7 TPFTADGEVDLDALRRLVEFLIEA-GVDGLVVLGTTGEAPTLTDEER-KEVIEAVVEAVAGRVPVIAGVGANSTREAIEL 84 (281)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHc-CCCEEEECCCCcccccCCHHHH-HHHHHHHHHHhCCCCeEEEecCCccHHHHHHH
Confidence 366667889999999999999874 99999975433311 22332 233333 232224688888877765555544
Q ss_pred --HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 395 --ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 --~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
..++.|+ |.+...+.++.++.+..+++
T Consensus 85 a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 85 ARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVAD 120 (281)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHh
Confidence 4455563 43333366777766666654
No 140
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=74.87 E-value=12 Score=34.84 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCC---hHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMK---CDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 327 ~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~---~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
..+.+.+.++++.+.+||++++|++.++.+..+ .+++.+.+ +..+. .+|||++...|.
T Consensus 20 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l-~~~~~--~~kpVia~v~g~ 80 (211)
T cd07019 20 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAEL-AAARA--AGKPVVVSAGGA 80 (211)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHH-HHHHh--CCCCEEEEECCe
Confidence 345677999999999999999999854432222 23333333 22333 589999876554
No 141
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=74.41 E-value=13 Score=34.84 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEcc--CC-CCChHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 327 NASEGQVVEAFKILTSDEKVKAILVNIF--GG-IMKCDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 327 ~~~~~~~~~al~~ll~d~~vd~ilv~i~--~~-~~~~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
..+.+.+.++++.+.+||++++|++.+- ++ ....+++.+.|.++ ++ .+|||++..
T Consensus 28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~-~~--~~kpVia~~ 85 (222)
T cd07018 28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERF-RA--SGKPVIAYA 85 (222)
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHH-HH--hCCeEEEEe
Confidence 3455678999999999999999999553 22 11345555555444 22 479998764
No 142
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.68 E-value=34 Score=33.85 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=75.4
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC--CCCC----
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG--GIMK---- 359 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~--~~~~---- 359 (422)
..++++|-.|--.+... .-+|++.|+.. --+++..+.+.+.+.+.++.+-+|++|++|++..+. ++..
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~ 110 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEAGMAS-FEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVI 110 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHH
Confidence 34777777775444332 25777788752 245677888888999999999999999999996543 1110
Q ss_pred -------------h--------------HHHHHHHHHHHHhcC---CCCcEEEE-eCCCCHHHHHHHHHHcCCCccccc
Q 014588 360 -------------C--------------DVIASGIVNAAKQVA---LKVPVVVR-LEGTNVDQGKRILKESGMTLITAE 407 (422)
Q Consensus 360 -------------~--------------~~~a~~i~~~~~~~~---~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~ 407 (422)
. .-.+.++++.++.++ .+|-|++. ..+..-......|.+.|.++.++.
T Consensus 111 ~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 111 QAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred hccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 0 113578888887754 35666654 233322334556778899987775
No 143
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=73.14 E-value=57 Score=32.25 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=58.9
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHH---
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKR--- 394 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~--- 394 (422)
|.|--|..+.+.+.+.++-+.+. ++|+|+++-..|-. ..++-.+.+..+.+..+...||++..++++..++.+
T Consensus 15 PF~~dg~vD~~a~~~lv~~li~~-Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak 93 (299)
T COG0329 15 PFDEDGSVDEEALRRLVEFLIAA-GVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAK 93 (299)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHH
Confidence 44434778999999999999875 59999985443322 233332222222222224688988888876666655
Q ss_pred HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 395 ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 ~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
..++.|+ |++.-.+.+...+.+.+++.
T Consensus 94 ~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~ 127 (299)
T COG0329 94 HAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAE 127 (299)
T ss_pred HHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHH
Confidence 3444553 53333455555555555443
No 144
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=72.68 E-value=19 Score=33.40 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
.+.+.+.++++.+.+|+++++|++.+..+.... .-.+.+.+..++.+.+|||++...|.
T Consensus 13 ~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~-~~~~~l~~~i~~~~~~kpvia~v~g~ 71 (207)
T TIGR00706 13 VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTV-VASEEIYEKLKKLKAKKPVVASMGGV 71 (207)
T ss_pred cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCH-HHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 346678899999999999999998543221111 12244444444432369999876553
No 145
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=72.35 E-value=30 Score=32.44 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=48.3
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+.... .-++++.+|+......-+.+..+.+...++++.++ ++|+.++|+. ..+.++
T Consensus 117 ~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 189 (268)
T cd06270 117 RKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVFC-------ANDEMA 189 (268)
T ss_pred ceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEEE-------cCcHHH
Confidence 378888754432211 23667777765433333455555555455555555 5678998884 235678
Q ss_pred HHHHHHHHhcCCCCc
Q 014588 365 SGIVNAAKQVALKVP 379 (422)
Q Consensus 365 ~~i~~~~~~~~~~kp 379 (422)
.++++++++.+...|
T Consensus 190 ~g~~~~l~~~g~~ip 204 (268)
T cd06270 190 AGAISALREHGISVP 204 (268)
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999887654333
No 146
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=71.76 E-value=24 Score=36.24 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=56.6
Q ss_pred ceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCe-eeccCCCCHHHHHHHHHHHHcCCCccEEEE-EccC--CCCChH
Q 014588 286 NYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANF-LDVGGNASEGQVVEAFKILTSDEKVKAILV-NIFG--GIMKCD 361 (422)
Q Consensus 286 ~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NP-lDl~g~~~~~~~~~al~~ll~d~~vd~ilv-~i~~--~~~~~~ 361 (422)
+.++++++|.++.||- +|---+|.++.+|..+... .+-+-.++++.+.++|+ ++|+++.+.+ +.-. |+.+
T Consensus 75 sl~~pgdkVLv~~nG~-FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~---~~~~~~~V~~vH~ETSTGvln-- 148 (383)
T COG0075 75 SLVEPGDKVLVVVNGK-FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD---KDPDIKAVAVVHNETSTGVLN-- 148 (383)
T ss_pred hccCCCCeEEEEeCCh-HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh---cCCCccEEEEEeccCcccccC--
Confidence 5666777999888876 9999999999999874322 12234566777777776 8999999887 3322 2223
Q ss_pred HHHHHHHHHHHhc
Q 014588 362 VIASGIVNAAKQV 374 (422)
Q Consensus 362 ~~a~~i~~~~~~~ 374 (422)
-.+.|.++.+++
T Consensus 149 -pl~~I~~~~k~~ 160 (383)
T COG0075 149 -PLKEIAKAAKEH 160 (383)
T ss_pred -cHHHHHHHHHHc
Confidence 235666677763
No 147
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=71.32 E-value=50 Score=32.12 Aligned_cols=93 Identities=24% Similarity=0.302 Sum_probs=58.6
Q ss_pred cCccHHHHHHH--HHHHCCC---------CCCCeeeccC--CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q 014588 299 NGAGLAMATMD--IIKLHGG---------TPANFLDVGG--NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 299 ngGG~gv~~~D--~l~~~G~---------~~~NPlDl~g--~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
.|||.|+.+ | .+..+|. ...|+..+.+ ..+++-+..-++.+++|-.++++=+ |+....++.+
T Consensus 14 ~sGGAGIqA-DLKTf~a~gvyg~saITaltaQNt~gV~~v~~v~~~~v~~Ql~av~~D~~v~avKt----GML~~~eiie 88 (263)
T COG0351 14 SSGGAGIQA-DLKTFQALGVYGMSAITALTAQNTLGVHGVHPVPPEFVEAQLDAVFSDIPVDAVKT----GMLGSAEIIE 88 (263)
T ss_pred CCccHHHHH-HHHHHHhcCCccceEEEEEEEeecCceeeEEeCCHHHHHHHHHHHhhcCCCCEEEE----CCcCCHHHHH
Confidence 467777764 5 3444453 3578876554 4556668888999999999998775 3333456778
Q ss_pred HHHHHHHhcCCCCcEE-----EEeCCC--CHHHHHHHHH
Q 014588 366 GIVNAAKQVALKVPVV-----VRLEGT--NVDQGKRILK 397 (422)
Q Consensus 366 ~i~~~~~~~~~~kpiv-----v~~~g~--~~~~~~~~L~ 397 (422)
.+.+.+++++. .|+| ++-+|. -.+++.+.|+
T Consensus 89 ~va~~l~~~~~-~~vV~DPVmvaksG~~Ll~~~a~~~l~ 126 (263)
T COG0351 89 VVAEKLKKYGI-GPVVLDPVMVAKSGDPLLDEEAVEALR 126 (263)
T ss_pred HHHHHHHhcCC-CcEEECceEEEcCCCcccChHHHHHHH
Confidence 88888877542 4443 444454 2355555555
No 148
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=71.04 E-value=23 Score=33.05 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=38.0
Q ss_pred cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 325 ~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
.+....+.+.++++.+.+||++++|++.+....... .-.+.+.+++++...+|||++...|
T Consensus 22 ~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~-~~~~~l~~~l~~~~~~KpViA~v~g 82 (214)
T cd07022 22 SGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEV-AGVFELADAIRAARAGKPIVAFVNG 82 (214)
T ss_pred CCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcH-HHHHHHHHHHHHHhcCCCEEEEECC
Confidence 334556779999999999999999998543221111 1123344444442126999987655
No 149
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=70.02 E-value=38 Score=33.17 Aligned_cols=121 Identities=11% Similarity=0.070 Sum_probs=68.0
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCC-----------CeeeccCC-CC---HHHHHHHHHHHHcCCCccEEEEEccCCC
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPA-----------NFLDVGGN-AS---EGQVVEAFKILTSDEKVKAILVNIFGGI 357 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~-----------NPlDl~g~-~~---~~~~~~al~~ll~d~~vd~ilv~i~~~~ 357 (422)
+|.|....|=+|-.++.++...|+++. |..++.|. .. +......++.+++. ..|.++|-+..
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~-- 78 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTH-- 78 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCC--
Confidence 577778888899999999888777532 22222221 00 01113445555533 35656653331
Q ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 358 MKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 358 ~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
+......++++.+ .++|+|+...|-..++-.++-+++++|+..-+++.--+..+.++++
T Consensus 79 ---P~~~~~n~~~~~~--~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apNfSiGv~ll~~~~~ 137 (275)
T TIGR02130 79 ---PSAVNDNAAFYGK--HGIPFVMGTTGGDREALAKLVADAKHPAVIAPNMAKQIVAFLAAIE 137 (275)
T ss_pred ---hHHHHHHHHHHHH--CCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECcccHHHHHHHHHHH
Confidence 2333444555555 5799998866654444444555578995555555555555555543
No 150
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=69.86 E-value=80 Score=30.72 Aligned_cols=100 Identities=10% Similarity=0.094 Sum_probs=58.6
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHHHHHHHHHH-HHhcCCCCcEEEEeCCCCHHHHHH-
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDVIASGIVNA-AKQVALKVPVVVRLEGTNVDQGKR- 394 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~~a~~i~~~-~~~~~~~kpivv~~~g~~~~~~~~- 394 (422)
-|.|=-|..+.+.+.+-++.+++ .++++++++-..| .. ..++- ..+++. .+..+...||++..+..+..++.+
T Consensus 8 TPf~~~g~iD~~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~Ls~~Er-~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~ 85 (285)
T TIGR00674 8 TPFKEDGSVDFAALEKLIDFQIE-NGTDAIVVVGTTGESPTLSHEEH-KKVIEFVVDLVNGRVPVIAGTGSNATEEAISL 85 (285)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccCcccccCCHHHH-HHHHHHHHHHhCCCCeEEEeCCCccHHHHHHH
Confidence 46666788999999999999886 7999999853322 11 22332 233332 222223688888776655555544
Q ss_pred --HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 395 --ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 --~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
..++.|+ |++...+.++.++.+..++.
T Consensus 86 a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAE 121 (285)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHh
Confidence 3344552 53332355555555555543
No 151
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=69.54 E-value=81 Score=30.73 Aligned_cols=100 Identities=10% Similarity=0.116 Sum_probs=58.1
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHH-HHhcCCCCcEEEEeCCCCHHHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNA-AKQVALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~-~~~~~~~kpivv~~~g~~~~~~~~ 394 (422)
--|.|=-|+.+.+.+.+-++.+.+ .++++++++-..|-. ..++-. .+++. .+..+...||++..++.+..++.+
T Consensus 10 ~TPf~~dg~iD~~~l~~~i~~l~~-~Gv~gi~~~Gs~GE~~~ls~~Er~-~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~ 87 (292)
T PRK03170 10 VTPFKEDGSVDFAALRKLVDYLIA-NGTDGLVVVGTTGESPTLTHEEHE-ELIRAVVEAVNGRVPVIAGTGSNSTAEAIE 87 (292)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECCcCCccccCCHHHHH-HHHHHHHHHhCCCCcEEeecCCchHHHHHH
Confidence 346666788999999999999987 789999985433322 223322 22332 222223578888776655555444
Q ss_pred ---HHHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 395 ---ILKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 395 ---~L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
..++.|+ |.+.-.+.++.++.+..++
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia 123 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIA 123 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHH
Confidence 4455563 5222224555555555544
No 152
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=68.59 E-value=19 Score=36.06 Aligned_cols=83 Identities=20% Similarity=0.236 Sum_probs=56.3
Q ss_pred CCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEECCHHHHHHHHHHHhcccccccccCCCC
Q 014588 46 VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQG 125 (422)
Q Consensus 46 vp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~~~ee~~~a~~~l~~~~~~~~~~~~~g 125 (422)
|.++.-+-|.+|+..++..+... .||=+|+....||+| -.++.+.+++..+...+-...+
T Consensus 114 vL~G~tvFs~~DA~~A~~~LL~~-G~VRlKp~~a~gG~G----------Q~vv~~~~~Ld~~L~~~~~~~l--------- 173 (355)
T PF11379_consen 114 VLPGYTVFSREDARRAARRLLRD-GPVRLKPVHATGGRG----------QQVVADADELDAALAALDDAEL--------- 173 (355)
T ss_pred ccCCccccCHHHHHHHHHHHhcc-CCeeeccCcccCCCC----------ceEecCHHHHHHHHHcCCHHHH---------
Confidence 45555666889999999987633 599999965556544 3444499998888887654432
Q ss_pred cccceEEEEeecCCCceEEEEEEe
Q 014588 126 KIVSKVYLCEKLSLVNEMYFAIML 149 (422)
Q Consensus 126 ~~~~~vlVee~i~~g~El~vgv~~ 149 (422)
.-.|+.+|+-+..-.-++||-.+
T Consensus 174 -~~~GlVLE~~L~~~~T~SVGqv~ 196 (355)
T PF11379_consen 174 -ARHGLVLEEDLEEVVTYSVGQVR 196 (355)
T ss_pred -HhCCEEEecccCCCceeeEEEEE
Confidence 12578888888655555665443
No 153
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=68.54 E-value=23 Score=32.74 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEcc--CCCC-ChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 327 NASEGQVVEAFKILTSDEKVKAILVNIF--GGIM-KCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 327 ~~~~~~~~~al~~ll~d~~vd~ilv~i~--~~~~-~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
..+...+.++++.+.+||++.+|++.+. |+.. ....+.+.+.. .+. .+||+++...|
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~-~~~--~~kpvia~v~g 75 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRR-LRK--AKKPVVASMGD 75 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHH-HHh--cCCcEEEEECC
Confidence 3456678899999999999999998543 3321 22233333322 222 47999987655
No 154
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=68.45 E-value=94 Score=28.27 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=63.7
Q ss_pred eEEEEEcCccHHHH--HHHHHHHCCCCC-------------CCe-eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 293 EIGCMVNGAGLAMA--TMDIIKLHGGTP-------------ANF-LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 293 ~vaiitngGG~gv~--~~D~l~~~G~~~-------------~NP-lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
+..+++-||..|+| +++.+.+.|+.. .|| +|..-. ...+..=-+.+.+ ..|++++ ++|+
T Consensus 32 g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i~--~~~~~~Rk~~m~~--~sda~I~-lPGG 106 (178)
T TIGR00730 32 GWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELIE--VNGMHERKAMMAE--LADAFIA-MPGG 106 (178)
T ss_pred CCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceEE--ECCHHHHHHHHHH--hCCEEEE-cCCC
Confidence 46666666535554 568888888631 222 222110 0112222233333 2466654 7788
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHH---HHHHHHHcCC-------CcccccCHHHHHHHHH
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQ---GKRILKESGM-------TLITAEDLDDAAEKAV 417 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~---~~~~L~~~Gi-------p~~vf~~~e~Av~al~ 417 (422)
+...+++.+.+.-..-. .++||+++......... -.+.+.+.|. .+++.+|++++++.+-
T Consensus 107 ~GTL~El~e~~~~~qlg-~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i~ 176 (178)
T TIGR00730 107 FGTLEELFEVLTWAQLG-IHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQVQ 176 (178)
T ss_pred cchHHHHHHHHHHHHcC-CCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHHH
Confidence 77778887776443222 15799987642222222 2234445442 3457789999988763
No 155
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=68.11 E-value=64 Score=33.69 Aligned_cols=89 Identities=22% Similarity=0.376 Sum_probs=58.4
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCC-CC-----CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC------
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGT-PA-----NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM------ 358 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~-~~-----NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~------ 358 (422)
..+|||||.-.|+++- |.+.-.-=. |. =|.=+=|.-....+.++++.+-+.+++|.++|.=.||..
T Consensus 135 p~~IGVITS~tgAair--DIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~F 212 (440)
T COG1570 135 PKKIGVITSPTGAALR--DILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAF 212 (440)
T ss_pred CCeEEEEcCCchHHHH--HHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhcc
Confidence 5589999999988764 655432211 11 223334666667799999999999999999986555522
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 359 KCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 359 ~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
+.+.++++|.. ...||+...|-.
T Consensus 213 NdE~vaRAi~~------s~iPvISAVGHE 235 (440)
T COG1570 213 NDEIVARAIAA------SRIPVISAVGHE 235 (440)
T ss_pred ChHHHHHHHHh------CCCCeEeecccC
Confidence 33444555433 578998666553
No 156
>PLN02417 dihydrodipicolinate synthase
Probab=67.45 E-value=75 Score=30.93 Aligned_cols=101 Identities=9% Similarity=-0.027 Sum_probs=60.4
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI 395 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~ 395 (422)
--|.|=-|+.+.+.+.+-++.+++ .++++|+++-..|-. ..++-.+-+..+.+......||++..+..+..++.+.
T Consensus 10 ~TPf~~~g~iD~~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~ 88 (280)
T PLN02417 10 KTPYLPDGRFDLEAYDSLVNMQIE-NGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHA 88 (280)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHH
Confidence 356777788999999999999987 699999985433311 2333333222223332245789988877666666554
Q ss_pred ---HHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 396 ---LKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 396 ---L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
.++.|. |++.-.+.++.++-+..++
T Consensus 89 a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va 123 (280)
T PLN02417 89 TEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVL 123 (280)
T ss_pred HHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHH
Confidence 344563 5322234455555554444
No 157
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=66.26 E-value=18 Score=37.87 Aligned_cols=84 Identities=19% Similarity=0.111 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCC--------HHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVAS--------VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s--------~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~- 99 (422)
.|++ +-+++.++| +|-+++++. ..++.+.+..- - --+|+||....| | .||.++
T Consensus 297 ~Lt~-ee~~~I~~H---vP~T~~l~~~~~~~~g~~~dL~~~~~a~--r-~~lVLKP~D~Yg--g---------~GV~~G~ 358 (445)
T PF14403_consen 297 FLTA-EERAFIRRH---VPWTRLLTAGRTTYQGEDVDLVEFAIAN--R-DRLVLKPNDEYG--G---------KGVYIGW 358 (445)
T ss_pred cCCH-HHHHHHHHh---CCceEEEcCccccccccchhHHHHHHhc--h-hcEEeccccccC--C---------CCeEECC
Confidence 3554 445566663 466666655 23444332221 1 368999976554 2 369998
Q ss_pred --CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEE
Q 014588 100 --KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYF 145 (422)
Q Consensus 100 --~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~v 145 (422)
++++=+++.++... +++++||++....|-+.
T Consensus 359 e~~~eeW~~~l~~a~~---------------~~yilQe~v~~~~~~~~ 391 (445)
T PF14403_consen 359 ETSPEEWEAALEEAAR---------------EPYILQEYVRPPREPMP 391 (445)
T ss_pred cCCHHHHHHHHHHHhc---------------CCcEEEEEecCCccccc
Confidence 78776666665432 36889999875544444
No 158
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.35 E-value=47 Score=33.01 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=74.5
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC--CCC----
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG--IMK---- 359 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~--~~~---- 359 (422)
...+++|-.|.=.+... .-+|++.|+. .--+.+..+.+.+.+.+.++.+-+||+||+|+|..+.+ +..
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~ 111 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIR-SLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVL 111 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHH
Confidence 34777777665444332 2577778875 33456778888889999999999999999999965531 110
Q ss_pred ---------------------------hHHHHHHHHHHHHhcC---CCCcEEEE-eCCCCHHHHHHHHHHcCCCccccc
Q 014588 360 ---------------------------CDVIASGIVNAAKQVA---LKVPVVVR-LEGTNVDQGKRILKESGMTLITAE 407 (422)
Q Consensus 360 ---------------------------~~~~a~~i~~~~~~~~---~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~ 407 (422)
..-.+.++++.+++++ .+|-|++. .++.--......|.+.|..++++.
T Consensus 112 ~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~ 190 (301)
T PRK14194 112 QAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVH 190 (301)
T ss_pred hccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEC
Confidence 0113567778777654 35666654 433322334456777888876774
No 159
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=65.32 E-value=1e+02 Score=30.30 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHH-
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKR- 394 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~- 394 (422)
--|.|=-|+.+.+.+.+-++.+.+ .++++++++-..| .. ..++-.+-+-.+.+....+.||++..+.....++.+
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~~-~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~ 87 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQIE-GGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLEL 87 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHH
Confidence 357777789999999999999986 6999999854332 11 233333222222333224688988777665555544
Q ss_pred --HHHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 395 --ILKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 395 --~L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
.-++.|. |++.-.+.++-++-+..++
T Consensus 88 a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia 122 (294)
T TIGR02313 88 TKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVA 122 (294)
T ss_pred HHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHH
Confidence 3344553 5333334455555555444
No 160
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=65.07 E-value=98 Score=27.26 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=63.6
Q ss_pred HHHHHHHCCCCCCCeeeccCC-CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeC
Q 014588 307 TMDIIKLHGGTPANFLDVGGN-ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLE 385 (422)
Q Consensus 307 ~~D~l~~~G~~~~NPlDl~g~-~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~ 385 (422)
.+-++.+.|+.+ +.+|. .+++ ++++..+ +.++|.|.+++..+ ........+++++++.+ ...|.+..|
T Consensus 32 ia~~l~d~GfeV----i~~g~~~tp~---e~v~aA~-~~dv~vIgvSsl~g--~h~~l~~~lve~lre~G-~~~i~v~~G 100 (143)
T COG2185 32 IARALADAGFEV----INLGLFQTPE---EAVRAAV-EEDVDVIGVSSLDG--GHLTLVPGLVEALREAG-VEDILVVVG 100 (143)
T ss_pred HHHHHHhCCceE----EecCCcCCHH---HHHHHHH-hcCCCEEEEEeccc--hHHHHHHHHHHHHHHhC-CcceEEeec
Confidence 445777888775 44443 3343 3343333 35788988865543 24567788888888853 345666677
Q ss_pred CCCHHHHHHHHHHcCCCccccc---CHHHHHHHHHHHh
Q 014588 386 GTNVDQGKRILKESGMTLITAE---DLDDAAEKAVKAI 420 (422)
Q Consensus 386 g~~~~~~~~~L~~~Gip~~vf~---~~e~Av~al~~~~ 420 (422)
|.-+.+..+.|++.|+- .+|. +.++++..+....
T Consensus 101 Gvip~~d~~~l~~~G~~-~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 101 GVIPPGDYQELKEMGVD-RIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred CccCchhHHHHHHhCcc-eeeCCCCCHHHHHHHHHHHH
Confidence 87566667889999984 2343 4566666655443
No 161
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=64.75 E-value=1.2e+02 Score=29.59 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=58.5
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC-C--ChHHHHHHHHHH-HHhcCCCCcEEEEeCCCCHHHHHH-
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI-M--KCDVIASGIVNA-AKQVALKVPVVVRLEGTNVDQGKR- 394 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~-~--~~~~~a~~i~~~-~~~~~~~kpivv~~~g~~~~~~~~- 394 (422)
-|.|=-|..+.+.+.+-++.+++...+++|+++-..|- . ..++- ..+++. .+..+.+.||++..+.....++.+
T Consensus 10 TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr-~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~l 88 (290)
T TIGR00683 10 VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEK-KEIFRIAKDEAKDQIALIAQVGSVNLKEAVEL 88 (290)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHH-HHHHHHHHHHhCCCCcEEEecCCCCHHHHHHH
Confidence 46666788888999999999887433999998533221 1 22222 233333 222223579988877655555544
Q ss_pred --HHHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 395 --ILKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 395 --~L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
..++.|. |.+.-.+.++.++-+.+++
T Consensus 89 a~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~ 123 (290)
T TIGR00683 89 GKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTII 123 (290)
T ss_pred HHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHH
Confidence 3445563 5333335566666555554
No 162
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=63.63 E-value=1.5e+02 Score=30.84 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCC--------------CHHHHH
Q 014588 329 SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGT--------------NVDQGK 393 (422)
Q Consensus 329 ~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~--------------~~~~~~ 393 (422)
+.+...++.+.+.++ ++|+|++...... .. ..++..++. .++|++.. ...+ ...+..
T Consensus 48 ~~~~~~~~~~~~~~~-~~d~ii~~~~tf~-~~----~~~~~~~~~--~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~ 119 (452)
T cd00578 48 TPDEARKAAEEFNEA-NCDGLIVWMHTFG-PA----KMWIAGLSE--LRKPVLLLATQFNREIPDFMNLNQSACGLREFG 119 (452)
T ss_pred CHHHHHHHHHHHhhc-CCcEEEEcccccc-cH----HHHHHHHHh--cCCCEEEEeCCCCCCCCchhhhhcchhhhHHHH
Confidence 667788888888886 8999997443221 11 334444455 47999865 3321 233455
Q ss_pred HHHHHcCCCc
Q 014588 394 RILKESGMTL 403 (422)
Q Consensus 394 ~~L~~~Gip~ 403 (422)
..|++.|+|.
T Consensus 120 ~~l~r~gi~~ 129 (452)
T cd00578 120 NILARLGIPF 129 (452)
T ss_pred HHHHHcCCce
Confidence 5789999994
No 163
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=62.50 E-value=37 Score=29.78 Aligned_cols=55 Identities=27% Similarity=0.416 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEc--cCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 328 ASEGQVVEAFKILTSDEKVKAILVNI--FGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d~~vd~ilv~i--~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
.+.+.+.+.++.+..|+++++|++.+ +|+. ......|.+++++ .+||+++...|.
T Consensus 11 ~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~---~~~~~~i~~~l~~--~~kpvva~~~g~ 67 (161)
T cd00394 11 VSADQLAAQIRFAEADNSVKAIVLEVNTPGGR---VDAGMNIVDALQA--SRKPVIAYVGGQ 67 (161)
T ss_pred chHHHHHHHHHHHHhCCCCceEEEEEECCCcC---HHHHHHHHHHHHH--hCCCEEEEECCh
Confidence 34456888999999999999998843 4432 1223556666666 469999887664
No 164
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=61.65 E-value=1.1e+02 Score=30.21 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=54.8
Q ss_pred cCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHHHHHHHHHH-HHhcCCCCcEEEEeCCCCHHHHHHH---HH
Q 014588 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDVIASGIVNA-AKQVALKVPVVVRLEGTNVDQGKRI---LK 397 (422)
Q Consensus 325 ~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~~a~~i~~~-~~~~~~~kpivv~~~g~~~~~~~~~---L~ 397 (422)
.|..+.+.+.+-++.+.+ .++++|+++-..| .. ..++- ..+++. .+..+.+.||++..+..+..++.+. .+
T Consensus 23 ~g~iD~~~l~~lv~~li~-~Gv~Gi~v~GstGE~~~Lt~eEr-~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 23 TDTVDLDETARLVERLIA-AGVDGILTMGTFGECATLTWEEK-QAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred CCCcCHHHHHHHHHHHHH-cCCCEEEECcccccchhCCHHHH-HHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHH
Confidence 367888889999999987 7999999854332 22 22332 233332 2222346899988776656665553 34
Q ss_pred HcCC-------CcccccCHHHHHHHHHHHh
Q 014588 398 ESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 398 ~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
+.|. |++.-.+.++.++-+..++
T Consensus 101 ~~Gad~vlv~~P~y~~~~~~~l~~yf~~va 130 (309)
T cd00952 101 DLGADGTMLGRPMWLPLDVDTAVQFYRDVA 130 (309)
T ss_pred HhCCCEEEECCCcCCCCCHHHHHHHHHHHH
Confidence 4452 5222235555555555444
No 165
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=61.63 E-value=1.4e+02 Score=29.35 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=58.4
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHH-HHHhcCCCCcEEEEeCCCCHHHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVN-AAKQVALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~-~~~~~~~~kpivv~~~g~~~~~~~~ 394 (422)
--|.|=-|+.+.+.+.+-++.+.+ .++|+|+++-..|-. ..++-. .+++ +.+......||++..+. +..++.+
T Consensus 16 vTPf~~dg~iD~~~l~~li~~l~~-~Gv~Gi~~~GstGE~~~Lt~eEr~-~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~ 92 (303)
T PRK03620 16 VTPFDADGSFDEAAYREHLEWLAP-YGAAALFAAGGTGEFFSLTPDEYS-QVVRAAVETTAGRVPVIAGAGG-GTAQAIE 92 (303)
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECcCCcCcccCCHHHHH-HHHHHHHHHhCCCCcEEEecCC-CHHHHHH
Confidence 356777788999999999998887 699999985433322 223322 2333 22222246899887655 4555544
Q ss_pred ---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 395 ---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 ---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
..++.|. |++...+.+...+-+..++.
T Consensus 93 ~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 93 YAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 3445563 52222355555555555543
No 166
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=61.58 E-value=1.2e+02 Score=27.00 Aligned_cols=109 Identities=16% Similarity=0.082 Sum_probs=54.7
Q ss_pred eEEEEEcCccHHHHHH--HHHHHCCCC----------CCCe-eec--cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC
Q 014588 293 EIGCMVNGAGLAMATM--DIIKLHGGT----------PANF-LDV--GGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (422)
Q Consensus 293 ~vaiitngGG~gv~~~--D~l~~~G~~----------~~NP-lDl--~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~ 357 (422)
++.+++ ||+.|+|.+ +.+.+.|+. ..|| +|+ ..+...+ ++.+-.- ..|++++ ++++.
T Consensus 31 g~~lv~-Gg~~GlM~a~a~ga~~~gg~viGVlp~~l~~~~~~~~~~i~~~~~~~--Rk~~m~~----~sda~Iv-lpGG~ 102 (159)
T TIGR00725 31 GHILIN-GGRTGVMEAVSKGAREAGGLVVGILPDEDFAGNPYLTIKVKTGMNFA--RNFILVR----SADVVVS-VGGGY 102 (159)
T ss_pred CCEEEc-CCchhHHHHHHHHHHHCCCeEEEECChhhccCCCCceEEEECCCcch--HHHHHHH----HCCEEEE-cCCch
Confidence 456666 887888754 777777762 2333 222 1111111 2322222 2366665 56665
Q ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCC----cccccCHHHHHHHH
Q 014588 358 MKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMT----LITAEDLDDAAEKA 416 (422)
Q Consensus 358 ~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip----~~vf~~~e~Av~al 416 (422)
...+++.+.+. .+||+++..+......-...+...|.. +.+-+||+++++.+
T Consensus 103 GTL~E~~~a~~-------~~kpv~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 103 GTAIEILGAYA-------LGGPVVVLRGTGGWTDRLSQVLIEGVYLDERVIVEITPAEAVKLA 158 (159)
T ss_pred hHHHHHHHHHH-------cCCCEEEEECCCcchHHHHHHHhccccccceeEecCCHHHHHHhh
Confidence 55555555432 379998764332222323222222221 23566899988653
No 167
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=60.97 E-value=41 Score=33.09 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=52.7
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCC--CCHHH------------HHHHHHHHHcCCCccEEEEEccCCCC
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN--ASEGQ------------VVEAFKILTSDEKVKAILVNIFGGIM 358 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~--~~~~~------------~~~al~~ll~d~~vd~ilv~i~~~~~ 358 (422)
|+|||..|+..+-.-+-++...+.. +.+.+- .+.++ .+..++.++++|++|+|+|..+...
T Consensus 5 rvgiiG~G~~~~~~~~~~~~~~~~~----~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~- 79 (342)
T COG0673 5 RVGIIGAGGIAGKAHLPALAALGGG----LELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL- 79 (342)
T ss_pred EEEEEcccHHHHHHhHHHHHhCCCc----eEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh-
Confidence 7899987766555566666665422 233222 22221 2344888999999999998655321
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEE-EeCCCCHHHHH---HHHHHcCCC
Q 014588 359 KCDVIASGIVNAAKQVALKVPVVV-RLEGTNVDQGK---RILKESGMT 402 (422)
Q Consensus 359 ~~~~~a~~i~~~~~~~~~~kpivv-~~~g~~~~~~~---~~L~~~Gip 402 (422)
-.+-+.++++. +|+|++ .....+.+++. +.-+++|+.
T Consensus 80 ----H~e~~~~AL~a---GkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 80 ----HAELALAALEA---GKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred ----hHHHHHHHHhc---CCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 12222334432 566665 22233334433 344455655
No 168
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=59.66 E-value=61 Score=31.14 Aligned_cols=118 Identities=8% Similarity=0.097 Sum_probs=60.8
Q ss_pred eEEEEEcCccHHHHHHHHHHHC-CCCCCCeeeccC-------CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 293 EIGCMVNGAGLAMATMDIIKLH-GGTPANFLDVGG-------NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~-G~~~~NPlDl~g-------~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
||+|+...|.+|-..+..+... +.++.-=+|... .... ....-++.+++ ++|.++.... .....
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i-~~~~dl~~ll~--~~DvVid~t~-----p~~~~ 74 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGV-AITDDLEAVLA--DADVLIDFTT-----PEATL 74 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCc-cccCCHHHhcc--CCCEEEECCC-----HHHHH
Confidence 6888888788888888887754 332211111110 0000 01122333444 4777664221 22223
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHH-HcCCCcccccCHHHHHHHHHHHhh
Q 014588 365 SGIVNAAKQVALKVPVVVRLEGTNVDQGKRILK-ESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~-~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
+ ++..+-+ .++|+++...|...++..++.+ +.++|+.+..+..-.+..+..+++
T Consensus 75 ~-~~~~al~--~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~ 129 (257)
T PRK00048 75 E-NLEFALE--HGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAE 129 (257)
T ss_pred H-HHHHHHH--cCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHH
Confidence 3 3333333 4899997754443444332222 267886677777777777766654
No 169
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=57.95 E-value=1.6e+02 Score=28.80 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=56.8
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHHHHHHHHHH-HHhcCCCCcEEEEeCCCCHHHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDVIASGIVNA-AKQVALKVPVVVRLEGTNVDQGKRI 395 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~~a~~i~~~-~~~~~~~kpivv~~~g~~~~~~~~~ 395 (422)
=|.|=-|+.+.+.+.+-++.+.+ .++|+++++-..| .. ..++- ..+++. .+..+.+.||++..+. ...++.+.
T Consensus 15 TPf~~dg~iD~~~l~~li~~l~~-~Gv~gi~v~GstGE~~~Lt~eEr-~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~ 91 (296)
T TIGR03249 15 TPFDADGSFDEAAYRENIEWLLG-YGLEALFAAGGTGEFFSLTPAEY-EQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEI 91 (296)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHh-cCCCEEEECCCCcCcccCCHHHH-HHHHHHHHHHhCCCCcEEEecCc-cHHHHHHH
Confidence 46666688899999999999986 7999999853322 22 22222 233332 2222246899887665 35555443
Q ss_pred ---HHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 396 ---LKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 396 ---L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
.++.|+ |++.-.+.+...+-+..++
T Consensus 92 a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~ 126 (296)
T TIGR03249 92 ARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVC 126 (296)
T ss_pred HHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 344553 5222235555555555554
No 170
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.78 E-value=1.9e+02 Score=28.19 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=55.8
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHHHHHHHHHH-HHhcCCCCcEEEEeCCCCHHHHHH-
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDVIASGIVNA-AKQVALKVPVVVRLEGTNVDQGKR- 394 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~~a~~i~~~-~~~~~~~kpivv~~~g~~~~~~~~- 394 (422)
=|.|=-|..+.+.+.+-++.+.+ .++++++++-..| .. ..++- ..+++. .+..+.+.||++..+. +..++.+
T Consensus 10 TPf~~dg~iD~~~l~~l~~~l~~-~Gv~gi~v~GstGE~~~Ls~eEr-~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~ 86 (289)
T cd00951 10 THFDADGSFDEDAYRAHVEWLLS-YGAAALFAAGGTGEFFSLTPDEY-AQVVRAAVEETAGRVPVLAGAGY-GTATAIAY 86 (289)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECcCCcCcccCCHHHH-HHHHHHHHHHhCCCCCEEEecCC-CHHHHHHH
Confidence 36666688899999999999886 6999999853322 11 22332 233332 2222246899887654 4555444
Q ss_pred --HHHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 395 --ILKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 395 --~L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
..++.|. |++.-.+.+.-.+-+..++
T Consensus 87 a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~ 121 (289)
T cd00951 87 AQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVC 121 (289)
T ss_pred HHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 4455553 5222234455555554444
No 171
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=57.45 E-value=1.8e+02 Score=28.14 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=48.1
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC--ChHHHHHHHHHHHH-hcCCCCcEEEEeCCCCHHHHHH--
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM--KCDVIASGIVNAAK-QVALKVPVVVRLEGTNVDQGKR-- 394 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~--~~~~~a~~i~~~~~-~~~~~kpivv~~~g~~~~~~~~-- 394 (422)
-|.|=-|+.+.+.+.+-++.+.+ .++++++++-..|-. -+.+--..+++... ..+...||++..++....++.+
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~-~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a 88 (284)
T cd00950 10 TPFKDDGSVDFDALERLIEFQIE-NGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELT 88 (284)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHH
Confidence 46666788888889999998886 789999986332211 12222233333322 2223578888777665555544
Q ss_pred -HHHHcC
Q 014588 395 -ILKESG 400 (422)
Q Consensus 395 -~L~~~G 400 (422)
..++.|
T Consensus 89 ~~a~~~G 95 (284)
T cd00950 89 KRAEKAG 95 (284)
T ss_pred HHHHHcC
Confidence 344455
No 172
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=55.57 E-value=48 Score=27.90 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=43.7
Q ss_pred CCeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 291 DGEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
..++++|-.|--.+..+. -.|+..|+. .--+.+..+.+.+.+.+.++.+.+||+|++|++..+.+
T Consensus 29 ~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq~PLP 98 (117)
T PF00763_consen 29 TPKLAIILVGDDPASISYVRSKQKAAEKLGIE-FELIELPEDISEEELLELIEKLNEDPSVHGILVQLPLP 98 (117)
T ss_dssp --EEEEEEES--HHHHHHHHHHHHHHHHHT-E-EEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEESSSS
T ss_pred CcEEEEEecCCChhHHHHHHHHHHHHHHcCCc-eEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEcCCCC
Confidence 347888888766664433 577778875 23346677888899999999999999999999976653
No 173
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=54.91 E-value=30 Score=32.10 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=35.3
Q ss_pred cCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEECCHHHHHHHHHHHhccccccccc
Q 014588 42 YGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQT 121 (422)
Q Consensus 42 ~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~~~ee~~~a~~~l~~~~~~~~~~ 121 (422)
-.+|.-+-....+..|... . +. +|+|+|.-..|+|-|| |++.|..+..+...-+. ..
T Consensus 29 e~FPLieQt~ypnh~em~s---~--~~-fPvVvKvG~~h~G~GK----------vkv~n~~~~qDi~sll~-~~------ 85 (203)
T PF02750_consen 29 EKFPLIEQTYYPNHREMLS---A--PR-FPVVVKVGHAHAGMGK----------VKVDNQQDFQDIASLLA-IT------ 85 (203)
T ss_dssp TTS-B---EEESSGGGGCS------SS-SSEEEEESS-STTTTE----------EEE-SHHHHHHHHHHHH-HH------
T ss_pred cccccceeeecCChhhhcc---C--CC-CCEEEEEccccCceeE----------EEEccHHHHHHHHHHHH-hc------
Confidence 3456555555555543321 1 24 8999998544544444 76667766665544332 11
Q ss_pred CCCCcccceEEEEeecCCCceEEE
Q 014588 122 GPQGKIVSKVYLCEKLSLVNEMYF 145 (422)
Q Consensus 122 ~~~g~~~~~vlVee~i~~g~El~v 145 (422)
-.-+.+|||++....+.+
T Consensus 86 ------~~Y~T~EPfId~kyDirv 103 (203)
T PF02750_consen 86 ------KDYATTEPFIDAKYDIRV 103 (203)
T ss_dssp ------TS-EEEEE---EEEEEEE
T ss_pred ------CceEEeeccccceeEEEE
Confidence 136789999974444433
No 174
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=53.11 E-value=60 Score=29.50 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 332 QVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 332 ~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
.+.++++...+++ ++.|++ |.+||.. .-+..|.+.++. .++|++++..|.
T Consensus 17 ~l~~~l~~a~~~~-~~~ivl~inspGG~v---~~~~~I~~~l~~--~~~pvva~V~g~ 68 (178)
T cd07021 17 FVERALKEAKEEG-ADAVVLDIDTPGGRV---DSALEIVDLILN--SPIPTIAYVNDR 68 (178)
T ss_pred HHHHHHHHHHhCC-CCeEEEEEECcCCCH---HHHHHHHHHHHh--CCCCEEEEECCc
Confidence 3678888888876 888887 5566643 234555566655 579999887665
No 175
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=52.24 E-value=2.3e+02 Score=27.45 Aligned_cols=99 Identities=12% Similarity=0.154 Sum_probs=56.1
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC--ChHHHHHHHHHHHH-hcCCCCcEEEEeCCCCHHHHHH---
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM--KCDVIASGIVNAAK-QVALKVPVVVRLEGTNVDQGKR--- 394 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~--~~~~~a~~i~~~~~-~~~~~kpivv~~~g~~~~~~~~--- 394 (422)
|.+=-|..+.+.+.+-++.+.+. ++++++++-..|-. -+.+--..+++... ..+.+.||++..++....++.+
T Consensus 12 Pf~~dg~id~~~~~~~i~~l~~~-Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~ 90 (289)
T PF00701_consen 12 PFNADGSIDEDALKRLIDFLIEA-GVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELAR 90 (289)
T ss_dssp -BETTSSB-HHHHHHHHHHHHHT-TSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHHHc-CCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHH
Confidence 55666788888899999999864 79999985433322 11221223333322 2224679998877765666554
Q ss_pred HHHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 395 ILKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 395 ~L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
..++.|+ |++.-.+.++.++-+..++
T Consensus 91 ~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 91 HAQDAGADAVLVIPPYYFKPSQEELIDYFRAIA 123 (289)
T ss_dssp HHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHH
T ss_pred HHhhcCceEEEEeccccccchhhHHHHHHHHHH
Confidence 3445553 5333346666665555544
No 176
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=51.78 E-value=98 Score=26.19 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=44.8
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
.|++=+....+.+...++++.++.++++..|++ +..+|+.|-+...+++.-.|.++-..+
T Consensus 34 ~nf~~v~~~t~~eei~~~~~~~l~~~digIIlI--------te~~a~~i~~~I~~~~~~~PaIieIP~ 93 (115)
T TIGR01101 34 PNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILI--------NQHIAEMIRHAVDAHTRSIPAVLEIPS 93 (115)
T ss_pred cceeeecCCCCHHHHHHHHHHHhhcCCeEEEEE--------cHHHHHHhHHHHHhcCCcCCEEEEECC
Confidence 577755666777789999999999999988886 456777776666665556888876544
No 177
>PRK06455 riboflavin synthase; Provisional
Probab=50.64 E-value=1.7e+02 Score=26.16 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEc-cCCCC----ChHHHHHHHHHHHHhcCCC
Q 014588 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNI-FGGIM----KCDVIASGIVNAAKQVALK 377 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i-~~~~~----~~~~~a~~i~~~~~~~~~~ 377 (422)
+.--+.|.+...| .-.| +++--=+-...+.-+.+.++++.++|+++..- .+... .|..++.+|.+..-+ .+
T Consensus 16 L~~gAi~~L~~~g-~~~~-I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~--t~ 91 (155)
T PRK06455 16 MGSAAIDELRKLD-PSAK-IIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLM--TN 91 (155)
T ss_pred HHHHHHHHHHhcC-CCCc-eEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHHHHHHHHHHHhh--hC
Confidence 4456778888877 3233 45443333444667778888888999999732 22222 256677788777555 68
Q ss_pred CcEEEE
Q 014588 378 VPVVVR 383 (422)
Q Consensus 378 kpivv~ 383 (422)
+||.-+
T Consensus 92 ~PVi~v 97 (155)
T PRK06455 92 KHIIEV 97 (155)
T ss_pred CCEEEE
Confidence 999844
No 178
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=50.59 E-value=65 Score=29.31 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeC
Q 014588 330 EGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLE 385 (422)
Q Consensus 330 ~~~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~ 385 (422)
.+.+.++++.+.+|+ ++.|++ |.+||.. .-+..|.+.+.. .+||+++...
T Consensus 15 ~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v---~~~~~i~~~l~~--~~kPvia~v~ 66 (187)
T cd07020 15 ADYLERAIDQAEEGG-ADALIIELDTPGGLL---DSTREIVQAILA--SPVPVVVYVY 66 (187)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEEECCCCCH---HHHHHHHHHHHh--CCCCEEEEEe
Confidence 345788888887654 888776 5666633 222344444444 5899998653
No 179
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=49.94 E-value=2.5e+02 Score=27.26 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=56.8
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC--ChHHHHHHHHHHHH-hcCCCCcEEEEeCCCCHHHHHH--
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM--KCDVIASGIVNAAK-QVALKVPVVVRLEGTNVDQGKR-- 394 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~--~~~~~a~~i~~~~~-~~~~~kpivv~~~g~~~~~~~~-- 394 (422)
-|.|=-|+.+.+.+.+-++.+.+.-++++++++-..|-. -+.+--..+++... ..+...||++..+..+..++.+
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a 89 (288)
T cd00954 10 TPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELA 89 (288)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHH
Confidence 466666888989999999999873389999985433322 12222223333222 2223578888776655555444
Q ss_pred -HHHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 395 -ILKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 395 -~L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
..++.|. |++.-.+.++-++-+..++
T Consensus 90 ~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~ 123 (288)
T cd00954 90 KHAEELGYDAISAITPFYYKFSFEEIKDYYREII 123 (288)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 4455662 4211124455555554444
No 180
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=49.28 E-value=1.4e+02 Score=27.55 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=43.9
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
++|++++..-+... -..|++...|+.....+ .++.+.+...+.++.+++.+.+++|+. ..+..|.
T Consensus 117 ~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~ai~~-------~~d~~a~ 187 (264)
T cd01574 117 RTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPPVL--EGDWSAESGYRAGRELLREGDPTAVFA-------ANDQMAL 187 (264)
T ss_pred CEEEEEecCCccchHHHHHHHHHHHHHHCCCCcceee--ecCCCHHHHHHHHHHHHhCCCCcEEEE-------cCcHHHH
Confidence 47888866544221 13466776776543222 233344444455555555545888874 2366788
Q ss_pred HHHHHHHhcC
Q 014588 366 GIVNAAKQVA 375 (422)
Q Consensus 366 ~i~~~~~~~~ 375 (422)
++++++++.+
T Consensus 188 g~~~~~~~~g 197 (264)
T cd01574 188 GVLRALHELG 197 (264)
T ss_pred HHHHHHHHcC
Confidence 8988888754
No 181
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=48.82 E-value=17 Score=36.26 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=37.3
Q ss_pred cCCCCCCeeeeC-CHHHHHHHH--hHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhccccc
Q 014588 42 YGINVPKGLAVA-SVDEVKKAI--QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILV 117 (422)
Q Consensus 42 ~GIpvp~~~~~~-s~~ea~~~a--~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~ 117 (422)
..|.+|++.++. +.+++.+.. ..+ . ||+|+||...+|. .+ ..-..+. +++.+.+ +
T Consensus 111 ~~i~~P~~v~i~~~~~~~~~~l~~agL--~-fPlI~KPlvA~Gs-a~-------SH~Maivf~~~gL~~----L------ 169 (307)
T PF05770_consen 111 GRIRVPKFVVINSDAESLPELLKEAGL--K-FPLICKPLVACGS-AD-------SHKMAIVFNEEGLKD----L------ 169 (307)
T ss_dssp TTEE-S-EEEESSSHCCHHHHHHCTTS----SSEEEEESB-SST-SC-------CCEEEEE-SGGGGTT-----------
T ss_pred CcccCCceEEEcCCHHHHHHHHHHCCC--c-ccEEeeehhhcCC-cc-------ceEEEEEECHHHHhh----c------
Confidence 477889999887 333343332 345 5 8999999876642 23 2446677 7766543 1
Q ss_pred ccccCCCCcccceEEEEeecCCCc
Q 014588 118 TKQTGPQGKIVSKVYLCEKLSLVN 141 (422)
Q Consensus 118 ~~~~~~~g~~~~~vlVee~i~~g~ 141 (422)
-..+++|||+.++-
T Consensus 170 ----------~~P~VlQeFVNHgg 183 (307)
T PF05770_consen 170 ----------KPPCVLQEFVNHGG 183 (307)
T ss_dssp -----------SSEEEEE----TT
T ss_pred ----------CCCEEEEEeecCCC
Confidence 02578999998653
No 182
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.71 E-value=1.8e+02 Score=25.23 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=60.8
Q ss_pred HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 308 ~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
+-+++.+|.++ +|++-+.+++.+-++. . ..+.|.|.+....+ .+......+++.+++.+...+. +..||.
T Consensus 22 ~~~l~~~GfeV---i~LG~~v~~e~~v~aa---~-~~~adiVglS~l~~--~~~~~~~~~~~~l~~~gl~~~~-vivGG~ 91 (134)
T TIGR01501 22 DHAFTNAGFNV---VNLGVLSPQEEFIKAA---I-ETKADAILVSSLYG--HGEIDCKGLRQKCDEAGLEGIL-LYVGGN 91 (134)
T ss_pred HHHHHHCCCEE---EECCCCCCHHHHHHHH---H-HcCCCEEEEecccc--cCHHHHHHHHHHHHHCCCCCCE-EEecCC
Confidence 44777778764 7999999998765554 2 24678888754433 2334456667777765433333 334553
Q ss_pred --C-HHH---HHHHHHHcCCCccccc---CHHHHHHHHHH
Q 014588 388 --N-VDQ---GKRILKESGMTLITAE---DLDDAAEKAVK 418 (422)
Q Consensus 388 --~-~~~---~~~~L~~~Gip~~vf~---~~e~Av~al~~ 418 (422)
. .++ ..+.|++.|+- .+|. ++++.+..+..
T Consensus 92 ~vi~~~d~~~~~~~l~~~Gv~-~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKEMGFD-RVFAPGTPPEVVIADLKK 130 (134)
T ss_pred cCcChhhhHHHHHHHHHcCCC-EEECcCCCHHHHHHHHHH
Confidence 1 112 24579999983 4777 67777666544
No 183
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=48.01 E-value=1.2e+02 Score=24.71 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 330 EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 330 ~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
.+...++++.++.++++..|+++-.. ...+.+.+.+...+ ..+|+++...+.
T Consensus 29 ~ee~~~~l~~l~~~~d~gII~Ite~~----~~~i~e~i~~~~~~--~~~P~ii~IP~~ 80 (100)
T PRK02228 29 DEKLDEAVEEVLEDDDVGILVMHDDD----LEKLPRRLRRTLEE--SVEPTVVTLGGG 80 (100)
T ss_pred HHHHHHHHHHHhhCCCEEEEEEehhH----hHhhHHHHHHHHhc--CCCCEEEEECCC
Confidence 46688999999889999988873210 12334444443433 579999876654
No 184
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=47.36 E-value=69 Score=26.95 Aligned_cols=78 Identities=24% Similarity=0.352 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCCccEEEEEccCCCCC-------hHHHHHHHHHHHHhcCCC-CcEEEEeCCCCHHHHHHHHHHcCCC-
Q 014588 332 QVVEAFKILTSDEKVKAILVNIFGGIMK-------CDVIASGIVNAAKQVALK-VPVVVRLEGTNVDQGKRILKESGMT- 402 (422)
Q Consensus 332 ~~~~al~~ll~d~~vd~ilv~i~~~~~~-------~~~~a~~i~~~~~~~~~~-kpivv~~~g~~~~~~~~~L~~~Gip- 402 (422)
-+.++++.+..+++-..+++.+--...+ .|.-.+.+ .+ .+ +++++ +|....+..-+|+-+|+|
T Consensus 7 G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L----~~--~~i~~viv--~G~Ra~DmalRLkyAGv~~ 78 (113)
T PF08353_consen 7 GFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKL----AD--PNIKQVIV--SGTRAEDMALRLKYAGVDE 78 (113)
T ss_pred HHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHH----hc--CCCCEEEE--EeeeHHHHHhHeeecCcch
Confidence 3678999999888888877644322221 12222333 11 12 33433 565567776788899999
Q ss_pred --cccccCHHHHHHHHH
Q 014588 403 --LITAEDLDDAAEKAV 417 (422)
Q Consensus 403 --~~vf~~~e~Av~al~ 417 (422)
+.+.+++++|+..+.
T Consensus 79 ~~i~v~~d~~~a~~~~~ 95 (113)
T PF08353_consen 79 EKIIVEEDLEEALDAFL 95 (113)
T ss_pred HHeEecCCHHHHHHHHH
Confidence 788999999999843
No 185
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=47.04 E-value=2.1e+02 Score=27.03 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHH-HHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE-EeCCCCHHHHHHHHHHcCCCc
Q 014588 326 GNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV-RLEGTNVDQGKRILKESGMTL 403 (422)
Q Consensus 326 g~~~~~~~~~al-~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv-~~~g~~~~~~~~~L~~~Gip~ 403 (422)
++.+.+.-.+++ +++...|++++|+. ..+.+|.++++++++.+.++-+.+ ...+ ...+...+.+.-+..
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~nd~~A~g~l~al~~~G~~~dv~vvg~d~--~~~~~~~~~~g~~~~ 240 (280)
T cd06303 170 TDATRQKAYQATSDILSNNPDVDFIYA-------CSTDIALGASDALKELGREDDILINGWGG--GSAELDAIQQGELDV 240 (280)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEE-------CCcHHHHHHHHHHHHcCCCCCcEEEecCC--CHHHHHHHHcCCceE
Confidence 344444433344 44445678999884 236778889998888543323332 3333 345556666543433
Q ss_pred ccccCHHHHHHHHHHH
Q 014588 404 ITAEDLDDAAEKAVKA 419 (422)
Q Consensus 404 ~vf~~~e~Av~al~~~ 419 (422)
.+..++++..+.++++
T Consensus 241 tv~~~~~~~g~~~~~~ 256 (280)
T cd06303 241 TVMRMNDDTGVAMAEA 256 (280)
T ss_pred EEecCchHhHHHHHHH
Confidence 3555666665555544
No 186
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=44.40 E-value=77 Score=30.62 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=43.3
Q ss_pred HHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcC-CCCc
Q 014588 308 MDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA-LKVP 379 (422)
Q Consensus 308 ~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~-~~kp 379 (422)
.|++.++|++.....=..++.+.+. +..+-+++...|++|+|+. ..|.+|.++.+++++.+ ...|
T Consensus 142 ~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~-------~nd~~A~ga~~~l~~~gr~~ip 208 (279)
T PF00532_consen 142 RDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFC-------ANDMMAIGAIRALRERGRLKIP 208 (279)
T ss_dssp HHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEE-------SSHHHHHHHHHHHHHTT-TCTT
T ss_pred HHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEE-------eCHHHHHHHHHHHHHcCCcccC
Confidence 4888999984433333456667666 4444555556789998884 35889999999998865 3444
No 187
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=44.31 E-value=1.5e+02 Score=28.91 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=51.4
Q ss_pred ccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCC
Q 014588 324 VGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGM 401 (422)
Q Consensus 324 l~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gi 401 (422)
..++.+.+. +..+-++|.++|++++|+. ..+.++-+.+++++..+....+.+. ..+ .++.++.+++..+
T Consensus 197 ~~~~~~~~~a~~~~~~~L~~~pdi~~i~~-------~~d~~a~ga~~A~~~~g~~~~v~v~g~D~--~~~~~~~i~~G~~ 267 (322)
T COG1879 197 QTGDWDRDKALEVMEDLLAANPDIDGIYA-------ANDGMALGAIQALKAAGRKGDVVVVGFDG--TPDALKALKDGKL 267 (322)
T ss_pred cCCcccHHHHHHHHHHHHHhCCCceEEEE-------CCchhHHHHHHHHHHcCCCCceEEEEecC--CHHHHHHHHcCCc
Confidence 345566554 6777788888999999884 1245566666666653322224332 434 3567777766535
Q ss_pred CcccccCHHHHHHHHHHH
Q 014588 402 TLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 402 p~~vf~~~e~Av~al~~~ 419 (422)
-..++.+|.......+.+
T Consensus 268 ~~~v~q~p~~~g~~~~~~ 285 (322)
T COG1879 268 DATVLQDPAAQGAAAVEL 285 (322)
T ss_pred eEEEecCHHHHHHHHHHH
Confidence 445667776665444443
No 188
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=43.81 E-value=60 Score=35.32 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEcc--CC--CCChHHHHHHHHHHHHhcCCCCcEEEE
Q 014588 328 ASEGQVVEAFKILTSDEKVKAILVNIF--GG--IMKCDVIASGIVNAAKQVALKVPVVVR 383 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d~~vd~ilv~i~--~~--~~~~~~~a~~i~~~~~~~~~~kpivv~ 383 (422)
.+...+.++++...+||+|++|++.+- ++ .+..+++.+.|.++.+ .+|||++.
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~---sgKpVvA~ 132 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKD---SGKPVYAY 132 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEE
Confidence 455678899999999999999998542 22 2234566677666533 47999875
No 189
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=43.73 E-value=1.5e+02 Score=27.43 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=46.4
Q ss_pred CeEEEEEcCccHH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+.. --..+++..+|.+........+..+.+...+.++.+++ .|.+++|++ ..+.+|
T Consensus 118 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 190 (269)
T cd06275 118 RRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFECEGGYEAMQRLLAQPKRPTAVFC-------GNDLMA 190 (269)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCCChHHHHHHHHHHHcCCCCCcEEEE-------CChHHH
Confidence 4788886433311 11246777777664433334455555544455555554 467898885 246788
Q ss_pred HHHHHHHHhcCC
Q 014588 365 SGIVNAAKQVAL 376 (422)
Q Consensus 365 ~~i~~~~~~~~~ 376 (422)
.++.+++++.+.
T Consensus 191 ~g~~~~l~~~g~ 202 (269)
T cd06275 191 MGALCAAQEAGL 202 (269)
T ss_pred HHHHHHHHHcCC
Confidence 889898887643
No 190
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.18 E-value=62 Score=31.89 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=49.0
Q ss_pred CCeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..++++|-.|-=.+..+. -+|+..|+. ..-+++..+.+.+.+.+.++.+.+||+|++|++..+.
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Pl 99 (285)
T PRK14191 31 RPKLAVILVGKDPASQTYVNMKIKACERVGMD-SDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPL 99 (285)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 347888877754443332 567777876 5667888889999999999999999999999996553
No 191
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.15 E-value=1.8e+02 Score=27.77 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=59.2
Q ss_pred eEEEEEc-CccHHHHHHHHHHHCCCCCCCe--eec-----cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 293 EIGCMVN-GAGLAMATMDIIKLHGGTPANF--LDV-----GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 293 ~vaiitn-gGG~gv~~~D~l~~~G~~~~NP--lDl-----~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
||+++|. ---..-...+.++..|..+.+. +++ -+..+++.+.+++..+ .+|+.|+||+. +.+. .+-.+.
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~-~~~~aDAifis-CTnL-rt~~vi 198 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA-FDPDADALFLS-CTAL-RAATCA 198 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh-cCCCCCEEEEe-CCCc-hhHHHH
Confidence 7888874 2333444556788888765332 222 3446677777777666 57899999984 2221 233333
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCC
Q 014588 365 SGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMT 402 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip 402 (422)
+.+-+ + .+|||+. .+..-.+..|+..|++
T Consensus 199 ~~lE~---~--lGkPVls----SNqat~W~~Lr~~G~~ 227 (239)
T TIGR02990 199 QRIEQ---A--IGKPVVT----SNQATAWRCLRLCGDP 227 (239)
T ss_pred HHHHH---H--HCCCEEE----HHHHHHHHHHHHcCCC
Confidence 33322 2 4899975 2345567888888886
No 192
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.79 E-value=1.7e+02 Score=27.34 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCCHHHHHHHH-HHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCC-CcEEEEeCCCCHHHHHHHHHHcC--CC
Q 014588 327 NASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK-VPVVVRLEGTNVDQGKRILKESG--MT 402 (422)
Q Consensus 327 ~~~~~~~~~al-~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~-kpivv~~~g~~~~~~~~~L~~~G--ip 402 (422)
+.+.+...+.+ +.+.+.|++++|++ ..+.+|.++.+++++.+.. +..++...+ .++..+.+++.. +.
T Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~al~~~g~~~~~~ivg~d~--~~~~~~~i~~g~~~~~ 236 (274)
T cd06311 166 NWNRDDAFSVMQDLLTKFPKIDAVWA-------HDDDMAVGVLAAIKQAGRTDIKFVVGGAG--SKDMIKMIMDGDPLIP 236 (274)
T ss_pred CCcHHHHHHHHHHHHHhCCCcCEEEE-------CCCcHHHHHHHHHHHcCCCCCceEEEeCC--CHHHHHHHHCCCCcee
Confidence 34444433444 44445788999874 1255678888888875432 223333333 355566666531 43
Q ss_pred cccccCHHHH
Q 014588 403 LITAEDLDDA 412 (422)
Q Consensus 403 ~~vf~~~e~A 412 (422)
..+..+|..+
T Consensus 237 ~~v~~~~~~~ 246 (274)
T cd06311 237 ADVLYPPSMI 246 (274)
T ss_pred EEEecCHHHH
Confidence 3344555444
No 193
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.59 E-value=2.7e+02 Score=25.77 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=45.7
Q ss_pred CeEEEEEcCccHH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...... --..|++..+|+.........++.+.+...+.++.++ +.+..++|+. ..+.+|
T Consensus 117 ~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 189 (269)
T cd06293 117 RRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGDYTREFGRAAAAQLLARGDPPTAIFA-------ASDEIA 189 (269)
T ss_pred ceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCCEEEE-------cCcHHH
Confidence 3788886443321 1123677777765321122345555555445555555 4577898885 246788
Q ss_pred HHHHHHHHhcCC
Q 014588 365 SGIVNAAKQVAL 376 (422)
Q Consensus 365 ~~i~~~~~~~~~ 376 (422)
.++.+++++.+.
T Consensus 190 ~g~~~al~~~g~ 201 (269)
T cd06293 190 IGLLEVLRERGL 201 (269)
T ss_pred HHHHHHHHHcCC
Confidence 899998887653
No 194
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.01 E-value=2.9e+02 Score=25.64 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=43.3
Q ss_pred CeEEEEEcCccH--H----HHHHHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGL--A----MATMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~--g----v~~~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++.+-+. + --..|.++.+|.... .+...++.+.+. +..+-+.+.+.|+.++|+. ..+.+|
T Consensus 126 ~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 197 (277)
T cd06319 126 GKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLA-GIRQQKDFSYQETFDYTNDLLTANPDIRAIWL-------QGSDRY 197 (277)
T ss_pred CcEEEEeccCCCccHHHHHHHHHHHHHhcCCceE-eeccCCCCCHHHHHHHHHHHHHhCCCCCEEEE-------CCCccc
Confidence 478888743221 1 123477777776532 222334555454 4444444556788888874 124556
Q ss_pred HHHHHHHHhcC
Q 014588 365 SGIVNAAKQVA 375 (422)
Q Consensus 365 ~~i~~~~~~~~ 375 (422)
.++++++++.+
T Consensus 198 ~g~~~al~~~g 208 (277)
T cd06319 198 QGALDAIATAG 208 (277)
T ss_pred hHHHHHHHHcC
Confidence 78888887754
No 195
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=41.42 E-value=74 Score=27.30 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=39.1
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHhcCCCC-cEEEEe-CCCCHHHHHH---HHHHcC-------CCcccccCHHHHH
Q 014588 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVALKV-PVVVRL-EGTNVDQGKR---ILKESG-------MTLITAEDLDDAA 413 (422)
Q Consensus 346 vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~k-pivv~~-~g~~~~~~~~---~L~~~G-------ip~~vf~~~e~Av 413 (422)
.|++++ .+||+...+++.+.+.-..-.. .+| |+++.- .|. ...-.+ .+.+.| -.+++.+|+++++
T Consensus 54 sda~I~-lPGG~GTl~El~~~~~~~~l~~-~~~~Piil~~~~g~-w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~ 130 (133)
T PF03641_consen 54 SDAFIA-LPGGIGTLDELFEALTLMQLGR-HNKVPIILLNIDGF-WDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEAL 130 (133)
T ss_dssp ESEEEE-ES-SHHHHHHHHHHHHHHHTTS-STS-EEEEEECGGC-CHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHH
T ss_pred CCEEEE-EecCCchHHHHHHHHHHHhhcc-ccCCCEEEeCCcch-HHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHH
Confidence 466665 6777666777777665433222 345 988764 342 333333 334444 1356888999999
Q ss_pred HHH
Q 014588 414 EKA 416 (422)
Q Consensus 414 ~al 416 (422)
+.+
T Consensus 131 ~~i 133 (133)
T PF03641_consen 131 EYI 133 (133)
T ss_dssp HHH
T ss_pred hhC
Confidence 864
No 196
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=40.89 E-value=2.4e+02 Score=27.02 Aligned_cols=102 Identities=19% Similarity=0.103 Sum_probs=50.6
Q ss_pred HHHHHCCCCCCCeeec-cCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEE-EEeC
Q 014588 309 DIIKLHGGTPANFLDV-GGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVV-VRLE 385 (422)
Q Consensus 309 D~l~~~G~~~~NPlDl-~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv-v~~~ 385 (422)
+++..+|....+.++. .+..+.+. +..+-+.+.++|+++++++ ..+..|.++++++++.+....+. +...
T Consensus 147 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~D~~A~g~~~al~~~g~~~dv~vvG~D 219 (298)
T cd06302 147 AYQKEKYYPMLELVDRQYGDDDADKSYQTAQELLKAYPDLKGIIG-------PTSVGIPGAARAVEEAGLKGKVAVTGLG 219 (298)
T ss_pred HHHhhcCCCCeEEeCcccCCCCHHHHHHHHHHHHHhCCCceEEEE-------CCCcchhHHHHHHHhcCCCCCEEEEEeC
Confidence 5566665222222222 34444444 4444455556788888885 12556778888888754322343 2333
Q ss_pred CCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHH
Q 014588 386 GTNVDQGKRILKESGMTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 386 g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~ 419 (422)
. .+.....+....+...+..+|.+-.+..+++
T Consensus 220 ~--~~~~~~~~~~g~i~~tv~~~~~~~g~~a~~~ 251 (298)
T cd06302 220 L--PNQMAPYVKSGAVKEFALWNPADLGYAAVYV 251 (298)
T ss_pred C--CHHHHHHHhCCeeEEEEecCHHHHHHHHHHH
Confidence 3 2334445544334322344565544444443
No 197
>PRK10949 protease 4; Provisional
Probab=40.42 E-value=65 Score=35.33 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCccEEEEEc--cCCCC--ChHHHHHHHHHHHHhcCCCCcEEEE
Q 014588 331 GQVVEAFKILTSDEKVKAILVNI--FGGIM--KCDVIASGIVNAAKQVALKVPVVVR 383 (422)
Q Consensus 331 ~~~~~al~~ll~d~~vd~ilv~i--~~~~~--~~~~~a~~i~~~~~~~~~~kpivv~ 383 (422)
..+.++++...+||+|.+|++.+ +++.. ...++.++|.++.+ .+|||++.
T Consensus 98 ~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~---sGKpVvA~ 151 (618)
T PRK10949 98 FDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRD---SGKPVYAV 151 (618)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHH---hCCeEEEE
Confidence 45788999999999999999854 33322 34677777777643 47998874
No 198
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=40.05 E-value=2.3e+02 Score=26.15 Aligned_cols=79 Identities=23% Similarity=0.149 Sum_probs=44.4
Q ss_pred CeEEEEEcCcc-HH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAG-LA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG-~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++..-+ .. --..+++..+|.+.....=..+..+.+...+.++.+++.+.+++|++ ..+..|
T Consensus 117 ~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-------~~d~~a 189 (268)
T cd06298 117 KKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFV-------TDDELA 189 (268)
T ss_pred ceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEE-------cCcHHH
Confidence 48999974433 11 11246777777653221111233444544455555555422899885 135667
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
.++++++++.+..
T Consensus 190 ~~~~~~l~~~g~~ 202 (268)
T cd06298 190 IGILNAAQDAGLK 202 (268)
T ss_pred HHHHHHHHHcCCC
Confidence 8888988876543
No 199
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=39.92 E-value=2.8e+02 Score=27.74 Aligned_cols=110 Identities=16% Similarity=0.082 Sum_probs=59.0
Q ss_pred CCeEEEEEcCccHH-----HHHHHHHHHCCCCCCC------eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCC
Q 014588 291 DGEIGCMVNGAGLA-----MATMDIIKLHGGTPAN------FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMK 359 (422)
Q Consensus 291 ~g~vaiitngGG~g-----v~~~D~l~~~G~~~~N------PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~ 359 (422)
...|+||+.|++.- -.+...++..|.++.+ =.........++..+..++ +.||++++|+....| ..
T Consensus 10 gd~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~a-f~d~~vk~Il~~rGG-yg- 86 (313)
T COG1619 10 GDEIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSA-FSDPDVKAILCVRGG-YG- 86 (313)
T ss_pred CCEEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHH-hcCCCCeEEEEcccC-CC-
Confidence 34899999999988 2333567778875311 1122233334455554444 459999999964443 22
Q ss_pred hHHHHHHH-HHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCH
Q 014588 360 CDVIASGI-VNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDL 409 (422)
Q Consensus 360 ~~~~a~~i-~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~ 409 (422)
+..+...+ -+..+. .+|+++-..-- ..--..++.+.|++ +|-.|
T Consensus 87 s~rlLp~ld~~~i~~--~pKifiGySDi--Tall~ai~~k~gl~--TfhGp 131 (313)
T COG1619 87 SNRLLPYLDYDLIRN--HPKIFIGYSDI--TALLLAILAKTGLI--TFHGP 131 (313)
T ss_pred hhhhhhhcchHHHhc--CCceEEEecHH--HHHHHHHHHhcCCc--eEecc
Confidence 22222222 122232 45655422211 12234578888888 77654
No 200
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.82 E-value=3e+02 Score=25.29 Aligned_cols=78 Identities=21% Similarity=0.132 Sum_probs=44.5
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|+++++.-+... -..+++..+|+......-..+..+.+. +..+.+.+.+.|++|+|++ ..+..|
T Consensus 117 ~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 189 (269)
T cd06288 117 RRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFC-------GNDRMA 189 (269)
T ss_pred ceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEE-------eCcHHH
Confidence 38999976544211 123566666654322222234444443 4444444545678999985 235677
Q ss_pred HHHHHHHHhcCC
Q 014588 365 SGIVNAAKQVAL 376 (422)
Q Consensus 365 ~~i~~~~~~~~~ 376 (422)
.++++++++.+.
T Consensus 190 ~~~~~~l~~~g~ 201 (269)
T cd06288 190 MGAYQALLERGL 201 (269)
T ss_pred HHHHHHHHHcCC
Confidence 788888887653
No 201
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.52 E-value=78 Score=31.19 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=48.1
Q ss_pred CCeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..++++|-.|.=.+.... -+|+..|+. ...+++..+.+.+.+...++.+-+||+|++|++..+
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~P 99 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMI-SEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVP 99 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 347887777755444332 577778876 456778888888889999999999999999999655
No 202
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.10 E-value=83 Score=30.99 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=46.6
Q ss_pred CeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 292 GEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 292 g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..+++|-.|.-.+.... -+|++.|+. .--+++..+.+.+.+.+.++.+-+|++|++|++..+.
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPL 101 (285)
T PRK10792 34 PGLAVVLVGSDPASQVYVASKRKACEEVGFV-SRSYDLPETTSEAELLALIDELNADPTIDGILVQLPL 101 (285)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 46777766644443322 467777765 4456778888889999999999999999999996553
No 203
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=38.71 E-value=2.7e+02 Score=25.67 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=47.8
Q ss_pred CCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCC-CCcEEEEeCCCCHHHHHHHHHHcCCCcc
Q 014588 327 NASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL-KVPVVVRLEGTNVDQGKRILKESGMTLI 404 (422)
Q Consensus 327 ~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~-~kpivv~~~g~~~~~~~~~L~~~Gip~~ 404 (422)
+.+.+. .....+.+..+| +++|+. ..+..+.++++++++.+. +++.++..++ ..+..+.+++..+.-.
T Consensus 164 ~~~~~~a~~~~~~~l~~~~-~~~i~~-------~~~~~~~g~~~al~~~g~~~~~~v~g~d~--~~~~~~~i~~g~~~a~ 233 (257)
T PF13407_consen 164 DWDPEDARQAIENLLQANP-VDAIIA-------CNDGMALGAAQALQQAGRAGKVIVVGFDG--SPEALEAIKDGNITAT 233 (257)
T ss_dssp TTSHHHHHHHHHHHHHHTT-EEEEEE-------SSHHHHHHHHHHHHHTTCTTTSEEEEEEC--HHHHHHHHHTTSSSEE
T ss_pred CCCHHHHHHHHHHhhhcCC-ceEEEe-------CCChHHHHHHHHHHHcCCcccceeecCCC--CHHHHHHHHCCCCeEE
Confidence 455554 445555555666 888874 236677788888887653 4555555544 4566677766665434
Q ss_pred cccCHHHHHHHHH
Q 014588 405 TAEDLDDAAEKAV 417 (422)
Q Consensus 405 vf~~~e~Av~al~ 417 (422)
++.+|..-....+
T Consensus 234 v~~~~~~~g~~av 246 (257)
T PF13407_consen 234 VGQDPYQQGYKAV 246 (257)
T ss_dssp EEE-HHHHHHHHH
T ss_pred EeCCHHHHHHHHH
Confidence 6666664443333
No 204
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=38.51 E-value=85 Score=25.16 Aligned_cols=50 Identities=24% Similarity=0.382 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhc--CCCCcEEEEeCC
Q 014588 329 SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV--ALKVPVVVRLEG 386 (422)
Q Consensus 329 ~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~--~~~kpivv~~~g 386 (422)
+++...++++.+++++++..|++ ++.+++.+-+...+. ....|+++.+.+
T Consensus 26 ~~ee~~~~l~~l~~~~~~gIIii--------~e~~~~~~~~~l~~~~~~~~~P~iv~IP~ 77 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVGIIII--------TEDLAEKIRDELDEYREESSLPLIVEIPS 77 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEEEEEE--------EHHHHTTHHHHHHHHHHTSSSSEEEEEST
T ss_pred CHHHHHHHHHHHhcCCCccEEEe--------eHHHHHHHHHHHHHHHhccCCceEEEcCC
Confidence 66779999999999999988887 344444443333222 257899886543
No 205
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=38.44 E-value=3.1e+02 Score=26.95 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=37.3
Q ss_pred HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcC---CCccEEEEEccCCCCChHHHHHHHHHHHHhcCC-CCc
Q 014588 309 DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSD---EKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL-KVP 379 (422)
Q Consensus 309 D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d---~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~-~kp 379 (422)
|++...|.+.....-..+..+.+.-+++++-+++. |++++|+. ..+.+|.++++++++.+. ..|
T Consensus 186 ~al~~~g~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~~-------~~d~~A~gvl~al~~~Gl~~vp 253 (330)
T PRK15395 186 KELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-------NNDAMAMGAVEALKAHNKSSIP 253 (330)
T ss_pred HHHHhcCCCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEEE-------CCchHHHHHHHHHHhcCCCCCe
Confidence 56666676533211113444544434445555542 56888874 236778899999888655 556
No 206
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=38.41 E-value=2.4e+02 Score=26.07 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=46.7
Q ss_pred CeEEEEEcCcc-HHH------HHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAG-LAM------ATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG-~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|+++++... ... -..+++..+|... ++++...+.+.+ .+..+.+.+.+.+.+++++. ..+..
T Consensus 113 ~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~ 184 (265)
T cd06291 113 KHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEV-RIIEIQENFDDAEKKEEIKELLEEYPDIDGIFA-------SNDLT 184 (265)
T ss_pred cEEEEEccCcccccchHHHHHHHHHHHHHcCCCC-ChheeeccccchHHHHHHHHHHhCCCCCCEEEE-------CChHH
Confidence 37888876554 111 1246677777653 335554444333 35555555556778888884 23567
Q ss_pred HHHHHHHHHhcCCC
Q 014588 364 ASGIVNAAKQVALK 377 (422)
Q Consensus 364 a~~i~~~~~~~~~~ 377 (422)
|.++.+++++.+..
T Consensus 185 a~~~~~al~~~g~~ 198 (265)
T cd06291 185 AILVLKEAQQRGIR 198 (265)
T ss_pred HHHHHHHHHHcCCC
Confidence 78888888875533
No 207
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.25 E-value=79 Score=31.19 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
...++++-.|--.+... .-+|++.|+. ..-+.+..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 38 ~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlP 105 (287)
T PRK14176 38 TPGLATILVGDDPASKMYVRLKHKACERVGIR-AEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLP 105 (287)
T ss_pred CCeEEEEEECCCcchHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 34677777664443322 2567777875 445677888888899999999999999999999655
No 208
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.98 E-value=84 Score=30.96 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=49.1
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
...+++|-.|--.+..+ .-+|++.|+. .--+.+..+.+.+.+.+.++.+-+|++||+|+|..+.
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPL 99 (286)
T PRK14184 31 APGLAVILVGEDPASQVYVRNKERACEDAGIV-SEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPL 99 (286)
T ss_pred CCEEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCC
Confidence 34788887775555433 3578888886 3356778888889999999999999999999997653
No 209
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.87 E-value=1e+02 Score=30.96 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCc-ccccCHHHHHHHH
Q 014588 367 IVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTL-ITAEDLDDAAEKA 416 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~-~vf~~~e~Av~al 416 (422)
.+++..+ ...|++...+|. +.. .+.|+++|+.+ +.-.|+..|.++.
T Consensus 74 ~l~vi~e--~~v~~V~~~~G~-P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~ 120 (320)
T cd04743 74 QLAVVRA--IKPTFALIAGGR-PDQ-ARALEAIGISTYLHVPSPGLLKQFL 120 (320)
T ss_pred HHHHHHh--cCCcEEEEcCCC-hHH-HHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4444444 244555555554 333 57899999982 2345788875543
No 210
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=37.79 E-value=1.9e+02 Score=27.23 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=41.1
Q ss_pred HHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCC-CcEEEEeCCCCHHHHHHHHHHc----CCCccccc
Q 014588 336 AFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK-VPVVVRLEGTNVDQGKRILKES----GMTLITAE 407 (422)
Q Consensus 336 al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~-kpivv~~~g~~~~~~~~~L~~~----Gip~~vf~ 407 (422)
-+..++.+|+++.++| ++ .+.++...++......+ .|.++.+.|+ -.+++++++++ ++| +.+
T Consensus 93 eLl~ll~~P~~~p~lv-fP------~e~a~e~t~v~~~~p~~k~plfIllDgT-W~eArKMfrksPyLa~lP--~vs 159 (231)
T COG3148 93 ELLALLANPDYQPYLV-FP------AEYAEELTEVISTAPAEKPPLFILLDGT-WREARKMFRKSPYLADLP--VVS 159 (231)
T ss_pred HHHHHHhCCCCceEEE-cc------hHHHHHHHHHhhcccccCCceEEEecCc-cHHHHHHHhcCchhccCC--ccc
Confidence 4666778999999996 22 24455555554443234 4577778887 67889988884 677 544
No 211
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.77 E-value=86 Score=30.87 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=47.6
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..+++++-.|--.+... .-+|++.|+. ..-+++..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 99 (284)
T PRK14190 32 VPGLAVILVGDDPASHSYVRGKKKAAEKVGIY-SELYEFPADITEEELLALIDRLNADPRINGILVQLP 99 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 34677776664444322 3577777876 456678888888999999999999999999999655
No 212
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.63 E-value=3e+02 Score=25.31 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=45.4
Q ss_pred CeEEEEEcCccHH-H-----HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLA-M-----ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~g-v-----~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+.. . -..|++..+|....+..-..+..+.+...++++-++ +.+++++|++ ..+..+
T Consensus 123 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 195 (270)
T cd06294 123 KKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIVA-------TDDLLA 195 (270)
T ss_pred ccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEEEE-------CChHHH
Confidence 4899997443321 1 123677777764433333344444444444554444 5678999885 135677
Q ss_pred HHHHHHHHhcCC
Q 014588 365 SGIVNAAKQVAL 376 (422)
Q Consensus 365 ~~i~~~~~~~~~ 376 (422)
.+++.++++.+.
T Consensus 196 ~g~~~al~~~g~ 207 (270)
T cd06294 196 LGVLKVLNELGL 207 (270)
T ss_pred HHHHHHHHHcCC
Confidence 888888877543
No 213
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.41 E-value=89 Score=30.78 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
...+++|-.|--.+.... -+|++.|+. .--+.+..+.+.+.+.+.++.+-+|++||+|++..+.
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Pl 100 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFH-SLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPL 100 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCC
Confidence 347888877755544332 567777875 4456778888899999999999999999999997553
No 214
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=37.05 E-value=75 Score=33.59 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=57.0
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVN 369 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~ 369 (422)
.|.++.++++||+..-.-+.....=.-|.-=+-++|+..+- ++..-+-.-..+|.+|.|++...-+.. + + -.+++
T Consensus 159 ~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~-~-e--y~~~e 234 (600)
T KOG1254|consen 159 PGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGD-E-E--YTFLE 234 (600)
T ss_pred CccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhccc-c-e--eehhh
Confidence 67899999999998877777665433333334455554433 244444445578999998873221111 1 1 24555
Q ss_pred HHHhcCCCCcEEEEeCCC
Q 014588 370 AAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 370 ~~~~~~~~kpivv~~~g~ 387 (422)
+.++-+-.||++++..|+
T Consensus 235 ~~k~g~~tkPlVaw~~gt 252 (600)
T KOG1254|consen 235 ANKEGKITKPLVAWCIGT 252 (600)
T ss_pred hhhcCCccCCEEEEecCc
Confidence 555544579999876664
No 215
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.02 E-value=93 Score=30.61 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=46.8
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
...++++-.|-=.+... .-.|++.|+. .--+++..+.+.+.+.+.++.+-+||+|++|++..+.
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PL 98 (282)
T PRK14166 30 ESCLAVILVGDNPASQTYVKSKAKACEECGIK-SLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPL 98 (282)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 34677776664443332 2567777775 4456778888888899999999999999999996553
No 216
>PRK11778 putative inner membrane peptidase; Provisional
Probab=36.64 E-value=82 Score=31.70 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=22.8
Q ss_pred cEEEE--EccCCCC-ChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 347 KAILV--NIFGGIM-KCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 347 d~ilv--~i~~~~~-~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
++|++ +.+||.. .++..+..+.++ ++ .+||+++++.+
T Consensus 124 ~aVvLridSpGG~v~~s~~a~~~l~~l-r~--~~kpVva~v~~ 163 (330)
T PRK11778 124 DEVLLRLESPGGVVHGYGLAASQLQRL-RD--AGIPLTVAVDK 163 (330)
T ss_pred CeEEEEEeCCCCchhHHHHHHHHHHHH-Hh--cCCCEEEEECC
Confidence 77776 5676654 344455555443 44 47899987654
No 217
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.63 E-value=92 Score=30.83 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=47.7
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..++++|-.|-=.+..+ .-+|++.|+. ..-+.+..+.+.+.+.+.++.+-+|++|++|++..+.
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPL 100 (294)
T PRK14187 32 FPCLIVILVGDDPASQLYVRNKQRKAEMLGLR-SETILLPSTISESSLIEKINELNNDDSVHGILVQLPV 100 (294)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 34677777764443322 3577888876 4456778888888899999999999999999997653
No 218
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=36.32 E-value=2.5e+02 Score=26.72 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=52.6
Q ss_pred cCCCHHHHHHHHHHcC---CCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC----C
Q 014588 28 LNIHEYQGAELMAKYG---INVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----K 100 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~G---Ipvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~----~ 100 (422)
..-+++.+|+.++..+ .-+|-..+.++++|+.- ..+ . .++|+|+..-+ |. ..|..+ +
T Consensus 17 ~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~~--~~L--p-~~fViK~nhgs---g~--------~~i~~dk~~~d 80 (239)
T PF14305_consen 17 KLADKYAVREYVEEKIGEEYLPPLLGVYDNPDDIDF--DSL--P-DKFVIKPNHGS---GS--------NIIVRDKSKLD 80 (239)
T ss_pred ecchHHHHHHHHHHhCCCceECceeecCCChhhhhh--hcC--C-CCEEEEEecCC---Cc--------EEEEeCCcccC
Confidence 3456889999999986 33344455667766532 234 4 58999996311 11 234443 5
Q ss_pred HHHHHHHHHHHhcccccc-cccCCCCcccceEEEEeecC
Q 014588 101 KEEVEDLAGKMLGQILVT-KQTGPQGKIVSKVYLCEKLS 138 (422)
Q Consensus 101 ~ee~~~a~~~l~~~~~~~-~~~~~~g~~~~~vlVee~i~ 138 (422)
.++++.-+.+++...... ...-.-..--..++||+++.
T Consensus 81 ~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~ 119 (239)
T PF14305_consen 81 IEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLE 119 (239)
T ss_pred HHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccc
Confidence 555665566655543100 00000111136899999995
No 219
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.31 E-value=90 Score=30.73 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=48.9
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..++++|-.|.-.+... .-+|++.|+. ..-+.+..+.+.+.+.+.++.+.+|++|++|++..+
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlP 99 (284)
T PRK14179 32 VPGLVVILVGDNPASQVYVRNKERSALAAGFK-SEVVRLPETISQEELLDLIERYNQDPTWHGILVQLP 99 (284)
T ss_pred CceEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 34788887775554332 3678888876 446788888889999999999999999999999654
No 220
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.28 E-value=93 Score=30.77 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=47.9
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
...+++|-.|-=.+... .-+|++.|+. .--+++..+.+.+.+.+.++.+.+|++||+|++..+
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 98 (293)
T PRK14185 31 RPHLAAILVGHDGGSETYVANKVKACEECGFK-SSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLP 98 (293)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecC
Confidence 44777777765444433 3577788875 335788888888889999999999999999999665
No 221
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.19 E-value=93 Score=30.64 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=46.9
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
...+++|-.|--.+..+ .-+|++.|+. ..-+++..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlP 98 (284)
T PRK14170 31 KPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK-SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLP 98 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecC
Confidence 34677777664443332 2577778875 345677888888889999999999999999999655
No 222
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=36.17 E-value=3.5e+02 Score=25.23 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=39.8
Q ss_pred CCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccc
Q 014588 328 ASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITA 406 (422)
Q Consensus 328 ~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf 406 (422)
.+.+. +..+-+++.+.|++|+|+. .+..|.++.+++++.+.++.|.+. +....+...+.+++..+.-.+.
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~i~~--------~d~~a~~~~~~l~~~g~p~di~vi-g~~~~p~~~~~l~~g~~~ttv~ 236 (268)
T cd06306 166 TGKEVQRKLVEEALEAHPDIDYIVG--------SAVAAEAAVGILRQRGLTDQIKIV-STYLSHAVYRGLKRGKILAAPT 236 (268)
T ss_pred ccHHHHHHHHHHHHHhCCCcCEEee--------cchhhhHHHHHHHhcCCCCCeEEE-ecCCCHHHHHHHHcCceEEEEe
Confidence 34444 3333444446688998773 156778888888875433344332 1122345666676644332344
Q ss_pred cCHHH
Q 014588 407 EDLDD 411 (422)
Q Consensus 407 ~~~e~ 411 (422)
.++..
T Consensus 237 ~~~~~ 241 (268)
T cd06306 237 DSMVL 241 (268)
T ss_pred cCHHH
Confidence 45544
No 223
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=36.10 E-value=1.8e+02 Score=30.92 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=55.7
Q ss_pred CeEEEEE---cCccHHHHH-HHHHHHCCCC---------CCCeeeccC--CCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 292 GEIGCMV---NGAGLAMAT-MDIIKLHGGT---------PANFLDVGG--NASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 292 g~vaiit---ngGG~gv~~-~D~l~~~G~~---------~~NPlDl~g--~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
+.|.+|+ .+||.|+.+ .=.+...|.. ..|...+.. ..+.+-+..-++.+++|-.+++|.+-.
T Consensus 10 ~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~~~~~~~~~~~ql~~~~~d~~~~aik~G~--- 86 (502)
T PLN02898 10 PHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGVHAVPLDFVAEQLKSVLSDMPVDVVKTGM--- 86 (502)
T ss_pred CeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCccceeeeCCHHHHHHHHHHHHhCCCCCEEEECC---
Confidence 3455554 578999998 7889999962 246644433 344455677888888888899988622
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEE
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVV 381 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpiv 381 (422)
....+.++.+.+..++.+ .+|++
T Consensus 87 -l~~~~~i~~i~~~l~~~~-~~~vV 109 (502)
T PLN02898 87 -LPSAEIVKVLCQALKEFP-VKALV 109 (502)
T ss_pred -cCCHHHHHHHHHHHHhCC-CCCEE
Confidence 223667778888777631 22465
No 224
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.57 E-value=94 Score=30.69 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=46.0
Q ss_pred CeEEEEEcCccHHHH-----HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 292 GEIGCMVNGAGLAMA-----TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 292 g~vaiitngGG~gv~-----~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..+++|-.|--.+.. -.-.|+..|+. ..-+.+..+.+.+.+.+.++.+.+|++|++|++..+.
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPL 100 (288)
T PRK14171 33 PKLAIVLVGDNPASIIYVKNKIKNAHKIGID-TLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPL 100 (288)
T ss_pred CeEEEEEeCCCccHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCC
Confidence 467777666333322 23567777875 3456777888889999999999999999999997653
No 225
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.27 E-value=4e+02 Score=25.56 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHH-cCC-CccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCc
Q 014588 326 GNASEGQVVEAFKILT-SDE-KVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVP 379 (422)
Q Consensus 326 g~~~~~~~~~al~~ll-~d~-~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kp 379 (422)
+..+.+.-.+.++.++ +.| ++++|++ ..+.+|.++++++++.+...|
T Consensus 180 ~~~~~~~~~~~~~~~L~~~~~~~~ai~~-------~~d~~a~g~~~al~~~g~~~p 228 (303)
T cd01539 180 ANWDRAQAKDKMDALLLKYGDKIEAVIA-------NNDAMALGAIEALQKYGYNKG 228 (303)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCccEEEE-------CCchHHHHHHHHHHHcCCCcC
Confidence 4445454334444444 445 4898884 235667788888877554444
No 226
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.17 E-value=97 Score=30.67 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=47.3
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
...+++|-.|-=.+... .-+|+..|+. ...+++..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 98 (295)
T PRK14174 31 VPGLTVIIVGEDPASQVYVRNKAKSCKEIGMN-STVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQP 98 (295)
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 34677776664443332 2577788876 456678888888899999999999999999999655
No 227
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.11 E-value=98 Score=30.70 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=48.6
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..++++|-.|--.+... .-+|++.|+. .--+++..+.+.+.+.+.++.+-+|++|++|++..+.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPl 101 (297)
T PRK14168 33 VPGLVTILVGESPASLSYVTLKIKTAHRLGFH-EIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPL 101 (297)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 34777777775544432 3578888876 3456778888999999999999999999999997653
No 228
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=35.05 E-value=3.3e+02 Score=25.33 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=57.5
Q ss_pred EEEEcCccHHHHHH--HHHHHCCCCC--CCeeeccCC----------CCHHHHHHHHHHHHcCCCccEEEEEccCCCCCh
Q 014588 295 GCMVNGAGLAMATM--DIIKLHGGTP--ANFLDVGGN----------ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360 (422)
Q Consensus 295 aiitngGG~gv~~~--D~l~~~G~~~--~NPlDl~g~----------~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~ 360 (422)
.++-.|||.|+|-+ |.+.+.|+.. -||-....+ .+...+..=-..+. ...|++++ ++|+....
T Consensus 48 ~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~~~~~~Rk~~~~--~~ada~V~-~pGG~GTl 124 (205)
T COG1611 48 LLVITGGGPGVMEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITGMDFAERKRAMV--RSADAFIV-LPGGFGTL 124 (205)
T ss_pred cEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCchhhccCccccceeeecCCHHHHHHHHH--HhCCEEEE-eCCCcchH
Confidence 45556777777754 7787778631 122111111 11111211111111 23467665 67777777
Q ss_pred HHHHHHHHHHHHhcC-CCCcEEEEeCCCCHHHHHH-HH----HHcC-------CCcccccCHHHHHHHHHHH
Q 014588 361 DVIASGIVNAAKQVA-LKVPVVVRLEGTNVDQGKR-IL----KESG-------MTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~-~~kpivv~~~g~~~~~~~~-~L----~~~G-------ip~~vf~~~e~Av~al~~~ 419 (422)
+++.+.+.-..-... ..+|+++. .++...+... .+ ...| -.+++.++++.+++++...
T Consensus 125 eEl~e~lt~~q~g~~~l~~~~~i~-~~~~~~~~~~~~~d~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 195 (205)
T COG1611 125 EELFEALTLGQTGVHALTPPPLIL-NGNGFWEPLLEFLDPHLIVEGLISEADRELLIVVDDAEEAIDAILKY 195 (205)
T ss_pred HHHHHHHHHhhCCcccCCCCcEEe-cchHHHHHHHHHhCHHHHHhhcCChhhhhheeeecCHHHHHHHHHHh
Confidence 777777655431211 13444332 2322222211 11 1211 2245888999988887654
No 229
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.95 E-value=1e+02 Score=30.38 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=48.1
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..++++|-.|.=.+..+ .-+|++.|+. ...+++..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~P 98 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQVGID-SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLP 98 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 44787777775544433 2577888876 456677888888889999999999999999999655
No 230
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.72 E-value=2.6e+02 Score=23.68 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=18.9
Q ss_pred EEEEEccCCCCC-hHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 348 AILVNIFGGIMK-CDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 348 ~ilv~i~~~~~~-~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
+|++..+|+..+ .....+.+.+..++.-++.+|..++
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 567666665432 2234455555555432455665543
No 231
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.67 E-value=1.1e+02 Score=30.08 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=47.0
Q ss_pred CCeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..++++|-.|.=.+..+. -+|++.|+. .--+++..+.+.+.+.+.++.+-+|++||+|++..+
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 97 (282)
T PRK14169 30 TPTLAVVLVGSDPASEVYVRNKQRRAEDIGVR-SLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLP 97 (282)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 346777777654443322 467777875 445677888888899999999999999999999655
No 232
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.36 E-value=99 Score=30.66 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..++++|-.|--.+.... -+|+..|+. ..-+++..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 98 (297)
T PRK14167 31 TPGLATVLMSDDPASETYVSMKQRDCEEVGIE-AIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMP 98 (297)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 347888877754443322 567777876 345778888888889999999999999999999655
No 233
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=33.90 E-value=1.1e+02 Score=30.43 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=44.9
Q ss_pred CeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 292 GEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 292 g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
.++++|-.|.=.+... .-+|+..|+. .--+++..+.+.+.+.+.++.+-+||+|++|++..+.
T Consensus 40 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~Pl 107 (299)
T PLN02516 40 PGLAVVIVGSRKDSQTYVNMKRKACAEVGIK-SFDVDLPENISEAELISKVHELNANPDVHGILVQLPL 107 (299)
T ss_pred CeEEEEEECCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCC
Confidence 4677776664333222 2457777765 3345677888888899999999999999999996653
No 234
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.76 E-value=1.1e+02 Score=30.20 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..++++|-.|-=.+..+ .-+|+..|+. ..-+++..+.+.+.+.+.++.+-+|++|++|++..+.
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPl 100 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGIT-SIRRDLPADATQEELNAVIDELNADPACTGYIVQLPL 100 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 44788777774444332 2567777875 4456788888899999999999999999999997653
No 235
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.68 E-value=1.5e+02 Score=27.56 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=44.2
Q ss_pred CeEEEEEcCccHH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++..-+.. .-..++++.+|....+++-...+. .+.-.+.++.++ +.+.+|+|+. ..+..|
T Consensus 117 ~~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 188 (269)
T cd06281 117 RRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLSTP-AASGFDATRALLALPDRPTAIIA-------GGTQVL 188 (269)
T ss_pred cEEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeecCcH-HHHHHHHHHHHHcCCCCCcEEEE-------cCcHHH
Confidence 4788886543221 112367777777654333333332 333334454444 5678899874 246778
Q ss_pred HHHHHHHHhcCC
Q 014588 365 SGIVNAAKQVAL 376 (422)
Q Consensus 365 ~~i~~~~~~~~~ 376 (422)
.++++++++.+.
T Consensus 189 ~g~~~~l~~~g~ 200 (269)
T cd06281 189 VGVLRALREAGL 200 (269)
T ss_pred HHHHHHHHHcCC
Confidence 888888887653
No 236
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=33.67 E-value=1.1e+02 Score=31.09 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=45.2
Q ss_pred CeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 292 GEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 292 g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..+++|-.|-=.+..+. -+|++.|+. .--+++..+.+.+.+.+.++.+-+|++||+|+|..+.
T Consensus 87 P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~-~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPL 154 (345)
T PLN02897 87 PGLAVVLVGQQRDSQTYVRNKIKACEETGIK-SLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPL 154 (345)
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHhcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 35666666644333322 467777775 2346777888888899999999999999999997553
No 237
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.66 E-value=1.1e+02 Score=30.22 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=46.7
Q ss_pred CCeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
...++++-.|.=.+.... -+|++.|+.. --+.+..+.+.+.+.+.++.+.+||++++|++..+.
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~Pl 99 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIYS-ITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPL 99 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCC
Confidence 347777777644443322 5677778753 345777888888899999999999999999996553
No 238
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.62 E-value=1.1e+02 Score=30.12 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=47.4
Q ss_pred CCCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 290 LDGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
...+++++-.|-=.+... .-+|++.|+. .--+.+..+.+.+.+.+.++.+-+|++|++|+|..+
T Consensus 25 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 93 (279)
T PRK14178 25 LYPRLATVIVGDDPASQMYVRMKHRACERVGIG-SVGIELPGDATTRTVLERIRRLNEDPDINGILVQLP 93 (279)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 344777777764444322 3577888875 344567788888889999999999999999999655
No 239
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.35 E-value=2.6e+02 Score=27.40 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..++++|-.|-=.+... .-+++..|+. ...+.+..+.+.+.+...++.+.+|+++++++|..+.
T Consensus 33 ~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~-~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPl 101 (283)
T PRK14192 33 TPILATILVGDDPASATYVRMKGNACRRVGMD-SLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPV 101 (283)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 34788877775444332 2467777775 5556666677788899999999999999999997653
No 240
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.15 E-value=1.1e+02 Score=30.01 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=48.0
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..++++|-.|-=.+... .-+|++.|+. ..-+.+..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlP 97 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGIT-SVEHHLPATTTQAELLALIARLNADPAVHGILVQLP 97 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 44788887775554433 3577888876 445677788888889999999999999999999655
No 241
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.97 E-value=1.1e+02 Score=30.29 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=46.8
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..++++|-.|-=.+... .-+|++.|+. .--+++..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 26 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlP 93 (287)
T PRK14181 26 APGLAVVLIGNDPASEVYVGMKVKKATDLGMV-SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLP 93 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 44777777664443322 2577778875 345677888888889999999999999999999655
No 242
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=32.91 E-value=1.8e+02 Score=26.26 Aligned_cols=47 Identities=30% Similarity=0.457 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 332 QVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 332 ~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
.+.++++...+| +++.|++ |.+||... -...|.+.++. .++|+++..
T Consensus 17 ~l~~~l~~A~~~-~~~~i~l~inSPGG~v~---~~~~I~~~i~~--~~~pvv~~v 65 (172)
T cd07015 17 QFDRYITIAEQD-NAEAIIIELDTPGGRAD---AAGNIVQRIQQ--SKIPVIIYV 65 (172)
T ss_pred HHHHHHHHHhcC-CCCeEEEEEECCCCCHH---HHHHHHHHHHh--cCcCEEEEE
Confidence 367888877654 5788776 67777442 23556666655 578998754
No 243
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=32.89 E-value=1.3e+02 Score=28.46 Aligned_cols=74 Identities=11% Similarity=0.249 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCC-C---CcEEEEeCCC--------CHHHHH-HH
Q 014588 329 SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL-K---VPVVVRLEGT--------NVDQGK-RI 395 (422)
Q Consensus 329 ~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~-~---kpivv~~~g~--------~~~~~~-~~ 395 (422)
....++.+|+.++.+-++|.++|...-+.+..+.+.+. ++..+. . -|..+ ..|+ +.++.+ .+
T Consensus 150 ~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~----l~~~~~~~v~L~PlMl-vAG~Ha~nDMasddedswk~i 224 (265)
T COG4822 150 HSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEY----LRKNGIKEVHLIPLML-VAGDHAKNDMASDDEDSWKNI 224 (265)
T ss_pred cHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHH----HHHcCCceEEEeeeEE-eechhhhhhhcccchHHHHHH
Confidence 34458899999999999999998666555555544444 443221 1 23322 2232 123444 48
Q ss_pred HHHcCCCccccc
Q 014588 396 LKESGMTLITAE 407 (422)
Q Consensus 396 L~~~Gip~~vf~ 407 (422)
|+++|+++.+|-
T Consensus 225 l~~~G~~v~~~l 236 (265)
T COG4822 225 LEKNGFKVEVYL 236 (265)
T ss_pred HHhCCceeEEEe
Confidence 999999966654
No 244
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.88 E-value=1.1e+02 Score=30.12 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=47.0
Q ss_pred CeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 292 GEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 292 g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..+++|..|--.+... .-+|++.|+. .--+.+..+.+.+.+.+.++.+-+|+++|+|++..+.
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPL 101 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHKVGMG-SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPV 101 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCC
Confidence 4688887775544332 3578888875 3445667778888899999999999999999996553
No 245
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=32.35 E-value=3.2e+02 Score=26.64 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=45.9
Q ss_pred HHHHHHHCCC---CCCCeeec-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE
Q 014588 307 TMDIIKLHGG---TPANFLDV-GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382 (422)
Q Consensus 307 ~~D~l~~~G~---~~~NPlDl-~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv 382 (422)
+.|..++.|. .|.|-.++ .|+.+ -|++++.+=+.+|++||.+.||.. ..++.=+.+..+++..|+.
T Consensus 136 a~~ltee~g~~~i~Py~~p~vIaGqgT-----iA~ElleqVg~iDalfvpvgGGGl-----lSgvAlaa~~l~P~i~vy~ 205 (323)
T KOG1251|consen 136 AKDLTEETGYYLIHPYNHPSVIAGQGT-----IALELLEQVGEIDALFVPVGGGGL-----LSGVALAAKSLKPSIEVYA 205 (323)
T ss_pred HHHHHHhcCcEEeCCCCCcceeeccch-----HHHHHHHhhCccceEEEeecCcch-----hhHHHHHHhccCCCcEEEE
Confidence 3455555554 34333333 35544 567777777889999997776533 2344334444334444554
Q ss_pred EeCCCCHHHHHHHHHHcCCC
Q 014588 383 RLEGTNVDQGKRILKESGMT 402 (422)
Q Consensus 383 ~~~g~~~~~~~~~L~~~Gip 402 (422)
.-. ...+++...+.+.+|-
T Consensus 206 veP-~~a~d~~qsf~~g~I~ 224 (323)
T KOG1251|consen 206 VEP-EAADDGQQSFLKGKIV 224 (323)
T ss_pred ecC-cccchHHHHHhcCCeE
Confidence 321 1234555666666663
No 246
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.11 E-value=1.1e+02 Score=29.95 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=46.7
Q ss_pred CeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 292 GEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 292 g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..++++-.|--.+... .-+|++.|+. .--+.+..+.+.+.+.+.++.+-+|++|++|++..+.
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPL 100 (278)
T PRK14172 33 PKIASILVGNDGGSIYYMNNQEKVANSLGID-FKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPL 100 (278)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCC
Confidence 3677776664444332 3577788876 3456778888888899999999999999999996553
No 247
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=31.77 E-value=71 Score=25.30 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC-CHHHHHHHHHHcCCCcccccCHHH
Q 014588 377 KVPVVVRLEGT-NVDQGKRILKESGMTLITAEDLDD 411 (422)
Q Consensus 377 ~kpivv~~~g~-~~~~~~~~L~~~Gip~~vf~~~e~ 411 (422)
+-|+|+.-|-+ -....+++-+++||| +++++.-
T Consensus 16 ~aP~VvAKG~g~~A~~I~~~A~e~~VP--i~~~~~L 49 (82)
T TIGR00789 16 KAPKVVASGVGEVAERIIEIAKKHGIP--IVEDPDL 49 (82)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHcCCC--EEeCHHH
Confidence 56777665443 344556666677888 7777643
No 248
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.72 E-value=1.8e+02 Score=26.87 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCC
Q 014588 329 SEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 376 (422)
Q Consensus 329 ~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~ 376 (422)
+.+...+.++.++ +.|++++|+. ..+..+.++++++++.+.
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~i~~-------~~~~~a~~~~~al~~~g~ 202 (268)
T cd06289 161 SRQGGAEAVAQLLDLPPRPTAIVC-------FNDLVAFGAMSGLRRAGL 202 (268)
T ss_pred chhhHHHHHHHHHcCCCCCCEEEE-------cCcHHHHHHHHHHHHcCC
Confidence 3344444444444 5588999884 235677888888887653
No 249
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=31.57 E-value=2.9e+02 Score=26.27 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=45.0
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++....... -..+++...|........+.++.+.+...+.++.+++ .+..++|++ .++.++
T Consensus 153 ~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 225 (309)
T PRK11041 153 KRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVFC-------HSDVMA 225 (309)
T ss_pred ceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEEE-------cCcHHH
Confidence 58999874332211 1135667777654322223455555554455555554 456888884 246678
Q ss_pred HHHHHHHHhcCC
Q 014588 365 SGIVNAAKQVAL 376 (422)
Q Consensus 365 ~~i~~~~~~~~~ 376 (422)
.++.+++++.+.
T Consensus 226 ~gv~~al~~~g~ 237 (309)
T PRK11041 226 LGALSQAKRMGL 237 (309)
T ss_pred HHHHHHHHHcCC
Confidence 888888887653
No 250
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=31.50 E-value=85 Score=30.65 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=37.5
Q ss_pred EEEEEcCccHHH-----HHHHHHHHCCCCCCCeeec-----cCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 294 IGCMVNGAGLAM-----ATMDIIKLHGGTPANFLDV-----GGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 294 vaiitngGG~gv-----~~~D~l~~~G~~~~NPlDl-----~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
|+|++.|++..- .+.+.++..|+.+..+=-+ .-..+.+.=.+-|..+++||++|+|+....|
T Consensus 1 I~iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG 72 (282)
T cd07025 1 IGIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGG 72 (282)
T ss_pred CEEEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 578888887654 3456788888854211111 1123344334456666789999999975443
No 251
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=31.48 E-value=1.3e+02 Score=29.96 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHcCCCCC-CeeeeCCHHHHHHHHhHh
Q 014588 30 IHEYQGAELMAKYGINVP-KGLAVASVDEVKKAIQDA 65 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp-~~~~~~s~~ea~~~a~~l 65 (422)
.+..+..+.|+..|++++ .+..+.+.+|+.+..+.+
T Consensus 227 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~ 263 (307)
T cd00114 227 KTQSEALAFLKEWGFPVSPETRLCKNIEEVLAFYDEI 263 (307)
T ss_pred CCHHHHHHHHHHCCCCCCCCeEEeCCHHHHHHHHHHH
Confidence 477889999999999998 467788999998887665
No 252
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=31.48 E-value=2.8e+02 Score=28.37 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=57.3
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCC------CCCCeeeccC------CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCCh
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGG------TPANFLDVGG------NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~------~~~NPlDl~g------~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~ 360 (422)
+|+|+.+|+ .+.+.+.++...|. .+.||--.-. ..+.......++++. .-++|.++.. . .
T Consensus 2 kiliiG~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~id~vi~~---~---e 73 (423)
T TIGR00877 2 KVLVIGNGG-REHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAISITDIEALVEFAK-KKKIDLAVIG---P---E 73 (423)
T ss_pred EEEEECCCh-HHHHHHHHHHhCCCccEEEEECCCHHHhhhcccccccCCCCCHHHHHHHHH-HhCCCEEEEC---C---c
Confidence 466665544 58888888888774 2344421100 011222344444444 4578888741 1 1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEe-----CCCCHHHHHHHHHHcCCCc---ccccCHHHHHHHH
Q 014588 361 DVIASGIVNAAKQVALKVPVVVRL-----EGTNVDQGKRILKESGMTL---ITAEDLDDAAEKA 416 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~~~kpivv~~-----~g~~~~~~~~~L~~~Gip~---~vf~~~e~Av~al 416 (422)
..+...+.+.+.+ .+.|++... ...+-...++.|++.|||. ..+.+++++.+.+
T Consensus 74 ~~l~~~~~~~l~~--~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~ 135 (423)
T TIGR00877 74 APLVLGLVDALEE--AGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYI 135 (423)
T ss_pred hHHHHHHHHHHHH--CCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHH
Confidence 1223345555554 345554210 0012233566788899984 2345777665543
No 253
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=31.38 E-value=2.9e+02 Score=22.51 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 330 EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 330 ~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
++...++++.+++++++..|++ ++.+++.+-+... ..+|+++-..+
T Consensus 29 ~ee~~~~l~~l~~~~d~gII~i--------te~~~~~i~~~i~---~~~P~Ii~IP~ 74 (100)
T PRK03957 29 PEEAKNAIKELVENDEIGIIII--------TERIAEEIRDLIS---VALPIIVEIPD 74 (100)
T ss_pred HHHHHHHHHHHhhCCCeEEEEE--------cHHHHHHHHHHHh---cCCCEEEEECC
Confidence 3668999999999999998886 3456666644443 36898876443
No 254
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=31.19 E-value=1.7e+02 Score=27.14 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=36.9
Q ss_pred HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCc
Q 014588 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVP 379 (422)
Q Consensus 308 ~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kp 379 (422)
.++++.+|+...+..-+.+..+.+...+.++.++ +.+..++|++ ..+..|.++++++++.+...|
T Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~~~~a~~~~~~l~~~g~~~p 205 (268)
T cd06273 140 RAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVIC-------GNDVLALGALYEARRLGLSVP 205 (268)
T ss_pred HHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEE-------cChHHHHHHHHHHHHcCCCCC
Confidence 3667777765433222233444444333444444 4678898884 236678888888887654334
No 255
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=31.05 E-value=1.1e+02 Score=25.50 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 333 VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 333 ~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
+..++.++..++++.++++..- ........++++..++.+.+.||++....
T Consensus 26 ~dd~~~~i~~~~~i~avvi~~d---~~~~~~~~~ll~~i~~~~~~iPVFl~~~~ 76 (115)
T PF03709_consen 26 TDDALAIIESFTDIAAVVISWD---GEEEDEAQELLDKIRERNFGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHCTTTEEEEEEECH---HHHHHHHHHHHHHHHHHSTT-EEEEEESC
T ss_pred hHHHHHHHHhCCCeeEEEEEcc---cccchhHHHHHHHHHHhCCCCCEEEEecC
Confidence 5578889999999999997332 22236778888888887789999987553
No 256
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.96 E-value=3.3e+02 Score=26.12 Aligned_cols=84 Identities=20% Similarity=0.098 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHH-HHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCc--EE-EEeCCCCHHHHHHHHHHc--
Q 014588 326 GNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVP--VV-VRLEGTNVDQGKRILKES-- 399 (422)
Q Consensus 326 g~~~~~~~~~al~~-ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kp--iv-v~~~g~~~~~~~~~L~~~-- 399 (422)
+..+.+.-.++++- +..+|++|+|+. ..+.+|.++++++++.+...| +. +...+. ......+...
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~A~g~~~al~~~g~~vp~di~vig~D~~--~~~~~~~~~~~l 252 (305)
T cd06324 182 AGWSEDEAYEQAENLLKRYPDVRLIWA-------ANDQMAFGALRAAKEAGRKPGRDVLFGGVNWS--PEALRAIKDGRL 252 (305)
T ss_pred CCCCHHHHHHHHHHHHHHCCCccEEEE-------CCchHHHHHHHHHHHcCCCcCCCEEEEecCCC--HHHHHHHHcCce
Confidence 34444443444444 445688998874 236788888888887653322 43 334443 3333334332
Q ss_pred ---CCCcccccCHHHHHHHHHHHh
Q 014588 400 ---GMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 400 ---Gip~~vf~~~e~Av~al~~~~ 420 (422)
..| .+.--..|++.+..+.
T Consensus 253 ttv~~~--~~~~g~~a~~~l~~~i 274 (305)
T cd06324 253 SVSAGG--HFTEGGWALVLLYDYA 274 (305)
T ss_pred EEEecC--CcccHHHHHHHHHHHH
Confidence 234 4555556666665543
No 257
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=30.66 E-value=3.8e+02 Score=26.18 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCC-----------ChHHHHHHHHHHHHhcCCCCcEEEEeCCC--CHHHHHHH
Q 014588 329 SEGQVVEAFKILTSDEKVKAILVNIFGGIM-----------KCDVIASGIVNAAKQVALKVPVVVRLEGT--NVDQGKRI 395 (422)
Q Consensus 329 ~~~~~~~al~~ll~d~~vd~ilv~i~~~~~-----------~~~~~a~~i~~~~~~~~~~kpivv~~~g~--~~~~~~~~ 395 (422)
+.+.|.++.+.+. +..+|+|=+|+.-... ...+....|++..++. .++||.+.+..+ +..+..+.
T Consensus 111 ~~~~~~~~a~~~~-~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 111 NKEDWTELAKLVE-EAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECCCCchhHHHHHHH
Confidence 4577888888774 3568888887642211 1233455566666542 468998876543 23445566
Q ss_pred HHHcCCC
Q 014588 396 LKESGMT 402 (422)
Q Consensus 396 L~~~Gip 402 (422)
+.++|+-
T Consensus 189 ~~~~Gad 195 (299)
T cd02940 189 AKEGGAD 195 (299)
T ss_pred HHHcCCC
Confidence 7777753
No 258
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=30.59 E-value=1.4e+02 Score=26.48 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 329 SEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 329 ~~~~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
+.+.+...|..+..+++++.|.+ |.+||.. .-+..|.++.+. .++|+++...|
T Consensus 13 ~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v---~~~~~i~~~i~~--~~~~v~~~~~g 67 (162)
T cd07013 13 SANQFAAQLLFLGAVNPEKDIYLYINSPGGDV---FAGMAIYDTIKF--IKADVVTIIDG 67 (162)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECCCCcH---HHHHHHHHHHHh--cCCCceEEEEe
Confidence 34557777888888888888776 5666632 334567777766 35677655434
No 259
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.49 E-value=4.3e+02 Score=24.29 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=50.6
Q ss_pred CeEEEEEcCccHH-----HHHHHHHHHC-CCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLA-----MATMDIIKLH-GGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~g-----v~~~D~l~~~-G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++++++++..... -..-+++... |++. .......+.+. +..+.+.+.+.|+.++|++ ..+.+|
T Consensus 122 ~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 191 (267)
T cd06322 122 GQVAIIDYPTVQSVVDRVRGFKEALADYPNIKI---VAVQPGITRAEALTAAQNILQANPDLDGIFA-------FGDDAA 191 (267)
T ss_pred ceEEEEecCCCccHHHHHHHHHHHHHhCCCcEE---EEecCCCChHHHHHHHHHHHHhCCCCCEEEE-------cCCcHH
Confidence 4899997543321 1123566666 6543 22222223333 4444555556788898874 235677
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCC
Q 014588 365 SGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGM 401 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gi 401 (422)
.++++++++.+.+...++...+. ..+...+...+.
T Consensus 192 ~~~~~al~~~g~~di~vvg~d~~--~~~~~~~~~~~~ 226 (267)
T cd06322 192 LGAVSAIKAAGRDNVKVIGFDGM--PEARKAVDGEPP 226 (267)
T ss_pred HHHHHHHHHCCCCCeEEEEecCC--HHHHHHHhcCCc
Confidence 88888887754422233334333 344444433333
No 260
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=30.47 E-value=1.4e+02 Score=29.36 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=47.1
Q ss_pred CCeEEEEEcCccHHHH-HH----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMA-TM----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~-~~----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..+++++-.|-=++.. +. -+++..|+. ..-.|+..+.+.+.+...++-+.+||++++|+|..+-
T Consensus 30 ~P~LavilvgddpaS~~YV~~K~k~~~~iGi~-~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPL 98 (283)
T COG0190 30 KPGLAVILVGDDPASQVYVRSKKKAAEEIGIA-SELYDLPEDITEEELLALIDELNADPEVDGILVQLPL 98 (283)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-eEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 3366666555544332 22 356677765 5778888999999999999999999999999996654
No 261
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=30.18 E-value=3.8e+02 Score=28.00 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE------EeCCCCHHHHHHHHHHcCCCc---cc
Q 014588 335 EAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV------RLEGTNVDQGKRILKESGMTL---IT 405 (422)
Q Consensus 335 ~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv------~~~g~~~~~~~~~L~~~Gip~---~v 405 (422)
..+-.+.++.++|.++| | +-..++.+|++.+++ .+.|++- .+-++ -.=+++.+.++|||. .+
T Consensus 53 ~~lv~fA~~~~idl~vV---G---PE~pL~~GvvD~l~~--~Gi~vFGPsk~AA~lE~S-K~faK~fm~k~~IPta~y~~ 123 (428)
T COG0151 53 EALVAFAKEKNVDLVVV---G---PEAPLVAGVVDALRA--AGIPVFGPTKAAAQLEGS-KAFAKDFMKKYGIPTAEYEV 123 (428)
T ss_pred HHHHHHHHHcCCCEEEE---C---CcHHHhhhhHHHHHH--CCCceeCcCHHHHHHHhh-HHHHHHHHHHcCCCcccccc
Confidence 34444556788998886 2 235578899999887 4666652 11111 122456788899984 45
Q ss_pred ccCHHHHHHHHH
Q 014588 406 AEDLDDAAEKAV 417 (422)
Q Consensus 406 f~~~e~Av~al~ 417 (422)
|+++++|...+-
T Consensus 124 f~~~e~a~ayi~ 135 (428)
T COG0151 124 FTDPEEAKAYID 135 (428)
T ss_pred cCCHHHHHHHHH
Confidence 667777765543
No 262
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=30.05 E-value=3.9e+02 Score=25.76 Aligned_cols=119 Identities=9% Similarity=0.123 Sum_probs=61.4
Q ss_pred eEEEEEcCccHHHHHHHHHHHC-CCCCCCeeecc-----CCC---------CHHHHHHHHHHHHcCCCccEEEEEccCCC
Q 014588 293 EIGCMVNGAGLAMATMDIIKLH-GGTPANFLDVG-----GNA---------SEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~-G~~~~NPlDl~-----g~~---------~~~~~~~al~~ll~d~~vd~ilv~i~~~~ 357 (422)
||+|+...|.+|-..+..+... ++++.--+|-. +.. ..-++..-++.+ ...+|.++... .
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l--~~~~DvVIdfT--~- 77 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV--ETDPDVLIDFT--T- 77 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh--cCCCCEEEECC--C-
Confidence 6788877788888888887753 44321112200 100 000111223333 23478776522 1
Q ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHH---HHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 358 MKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKR---ILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 358 ~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~---~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
.....+ .+..+-+ .++|+|+...|...++..+ .-+++|+|+.+-.+..-.+..+.++++
T Consensus 78 --p~~~~~-~~~~al~--~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~ 139 (266)
T TIGR00036 78 --PEGVLN-HLKFALE--HGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLE 139 (266)
T ss_pred --hHHHHH-HHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 222233 3333333 4799998754543333322 235568996666677777777776654
No 263
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=29.86 E-value=2.7e+02 Score=25.99 Aligned_cols=72 Identities=21% Similarity=0.113 Sum_probs=39.8
Q ss_pred HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCC---CcEEEEe
Q 014588 309 DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK---VPVVVRL 384 (422)
Q Consensus 309 D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~---kpivv~~ 384 (422)
+++.++|.+.....-..++.+.+...+.++.+++ .+.+++|++ ..+.+|.++++++++.+.. ..-+++.
T Consensus 143 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~~l~~~g~~vP~di~vvg~ 215 (269)
T cd06297 143 QALKDAGRPFSPDLLAITDHSEEGGRLAMRHLLEKASPPLAVFA-------SADQQALGALQEAVELGLTVGEDVRVVGF 215 (269)
T ss_pred HHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHcCCCCCcEEEE-------cCcHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 5566666653221112233344444455555554 567899885 2467888999988876532 2234445
Q ss_pred CCC
Q 014588 385 EGT 387 (422)
Q Consensus 385 ~g~ 387 (422)
.+.
T Consensus 216 d~~ 218 (269)
T cd06297 216 DDH 218 (269)
T ss_pred CCc
Confidence 554
No 264
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=29.81 E-value=5.2e+02 Score=26.76 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=61.2
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCC--------CC---------eeeccCCCCHHHHH---HHHHHHHcCCCccEEEEE
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTP--------AN---------FLDVGGNASEGQVV---EAFKILTSDEKVKAILVN 352 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~--------~N---------PlDl~g~~~~~~~~---~al~~ll~d~~vd~ilv~ 352 (422)
+|.|+ |+|=.++..+-++...|... .| ++.++...+.+.|. ..++++. ..++|+|+-.
T Consensus 4 kili~-g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~-~~~id~I~pg 81 (449)
T TIGR00514 4 KILIA-NRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAE-ITGADAIHPG 81 (449)
T ss_pred eEEEe-CCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHH-HhCCCEEEeC
Confidence 67777 88889999999999999831 12 12232222333342 4555554 4689998842
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCCCcEEEE------eCCCCHHHHHHHHHHcCCCcc-----cccCHHHHHHHH
Q 014588 353 IFGGIMKCDVIASGIVNAAKQVALKVPVVVR------LEGTNVDQGKRILKESGMTLI-----TAEDLDDAAEKA 416 (422)
Q Consensus 353 i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~------~~g~~~~~~~~~L~~~Gip~~-----vf~~~e~Av~al 416 (422)
. +....... +.+.+.+ .+.|++.. ... +-...++.|.+.|||.- ...+++++...+
T Consensus 82 ~-g~~se~~~----~a~~~e~--~Gi~~~g~~~~~~~~~~-DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~ 148 (449)
T TIGR00514 82 Y-GFLSENAN----FAEQCER--SGFTFIGPSAESIRLMG-DKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIA 148 (449)
T ss_pred C-CccccCHH----HHHHHHH--CCCcEECcCHHHHHHhC-CHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHH
Confidence 2 11111111 3334444 34554321 111 23446678889999841 123666655443
No 265
>PRK09330 cell division protein FtsZ; Validated
Probab=29.24 E-value=2.8e+02 Score=28.57 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=17.1
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCC
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGG 316 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~ 316 (422)
+|.||..||| |-.+.|.+...|.
T Consensus 15 ~IkViGvGG~-G~Nav~~m~~~~~ 37 (384)
T PRK09330 15 VIKVIGVGGG-GGNAVNRMIEEGI 37 (384)
T ss_pred eEEEEEECCc-HHHHHHHHHHcCC
Confidence 7888887775 6667777777775
No 266
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.19 E-value=1.5e+02 Score=29.26 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=46.8
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
...+++|-.|-=.+... .-+|++.|+. .--+.+..+.+.+.+.+.++.+-+|++|++|++..+.
T Consensus 29 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 97 (287)
T PRK14173 29 VPHLRVVRLGEDPASVSYVRLKDRQAKALGLR-SQVEVLPESTSQEELLELIARLNADPEVDGILVQLPL 97 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 34677777664333322 2577888875 3455777788888899999999999999999997653
No 267
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=28.92 E-value=3.3e+02 Score=25.72 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=50.5
Q ss_pred cCccHHHHHHH--HHHHCCC---------CCCCeeeccC--CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q 014588 299 NGAGLAMATMD--IIKLHGG---------TPANFLDVGG--NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 299 ngGG~gv~~~D--~l~~~G~---------~~~NPlDl~g--~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
.|||.|+.+ | .+..+|. +..|+-.+.. ..+++-+.+-++.+++|-.+++|-+-. ....+..+
T Consensus 9 ~sggaGi~a-D~~t~~~~g~~~~~v~T~~t~q~~~~v~~~~~~~~~~~~~q~~~~~~d~~~~aikiG~----l~~~~~~~ 83 (254)
T TIGR00097 9 SGGGAGIQA-DLKTFSALGVFGTSVITALTAQNTRGVTGVYPIPPDFVEAQLDAVFSDIPVDAAKTGM----LASAEIVE 83 (254)
T ss_pred CCcHHHHHH-HHHHHHHcCCeecceeEEEEeEcCcceEEEEECCHHHHHHHHHHHHhCCCCCEEEECC----cCCHHHHH
Confidence 467777654 5 5666665 2457655543 345566888999999999999988622 22356777
Q ss_pred HHHHHHHhcCCCC-cEEE
Q 014588 366 GIVNAAKQVALKV-PVVV 382 (422)
Q Consensus 366 ~i~~~~~~~~~~k-pivv 382 (422)
.+++.++++ ++ |+++
T Consensus 84 ~i~~~~~~~--~~~~vVl 99 (254)
T TIGR00097 84 AVARKLREY--PVRPLVV 99 (254)
T ss_pred HHHHHHHhc--CCCcEEE
Confidence 788877763 44 5653
No 268
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=28.64 E-value=1.4e+02 Score=29.54 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=37.3
Q ss_pred eEEEEEcCccHH-------HHHHHHHHHCCCCCC--Cee----eccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 293 EIGCMVNGAGLA-------MATMDIIKLHGGTPA--NFL----DVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 293 ~vaiitngGG~g-------v~~~D~l~~~G~~~~--NPl----Dl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
+|+|++-|++.. -.+.+.++..|.++- .-+ +.-. .+.+.=.+-|..++.||++|+|+....
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a-g~~~~Ra~dL~~a~~Dp~i~aI~~~rG 75 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLS-ASPEERAEELMAAFADPSIKAIIPTIG 75 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEeccccccccccc-CCHHHHHHHHHHHhcCCCCCEEEECCc
Confidence 689999999853 234577888888531 111 1112 233333344555668999999996443
No 269
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.61 E-value=4e+02 Score=24.40 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHCCCCCC-CeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHHHHHHHHHhcC
Q 014588 308 MDIIKLHGGTPA-NFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA 375 (422)
Q Consensus 308 ~D~l~~~G~~~~-NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~ 375 (422)
.|.++.+|.... ..+... ..+.+...++++.++ +.|.+++|++ ..+.+|.++++++++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~~l~~~g 201 (267)
T cd06283 140 KEALAEHGIGVNEELIEID-DEDADELDERLRQLLNKPKKKTAIFA-------ANGLILLEVLKALKELG 201 (267)
T ss_pred HHHHHHcCCCCCcceeEec-ccchHHHHHHHHHHHcCCCCCCEEEE-------cCcHHHHHHHHHHHHcC
Confidence 466667775432 223333 223344445555554 4567899885 24677888888888754
No 270
>PRK13054 lipid kinase; Reviewed
Probab=28.43 E-value=4.1e+02 Score=25.88 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=52.2
Q ss_pred CeEEEEEcCccHHHH-HHH---HHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q 014588 292 GEIGCMVNGAGLAMA-TMD---IIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGI 367 (422)
Q Consensus 292 g~vaiitngGG~gv~-~~D---~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i 367 (422)
.++.+|.|+.+-+-- ..+ .+...|.+ +++.-.-......+..+.... +++|.|++ .||-..-.+++.++
T Consensus 4 ~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~----~~v~~t~~~~~a~~~a~~~~~-~~~d~vvv--~GGDGTl~evv~~l 76 (300)
T PRK13054 4 PKSLLILNGKSAGNEELREAVGLLREEGHT----LHVRVTWEKGDAARYVEEALA-LGVATVIA--GGGDGTINEVATAL 76 (300)
T ss_pred ceEEEEECCCccchHHHHHHHHHHHHcCCE----EEEEEecCCCcHHHHHHHHHH-cCCCEEEE--ECCccHHHHHHHHH
Confidence 367788887663322 112 33344432 333211111222233333333 45787664 44433334556666
Q ss_pred HHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHH
Q 014588 368 VNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAV 417 (422)
Q Consensus 368 ~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~ 417 (422)
.+...+ ...|+-+...|+ .....+ ..|+| .+|++|++++.
T Consensus 77 ~~~~~~--~~~~lgiiP~GT-gNdfar---~lgi~----~~~~~a~~~i~ 116 (300)
T PRK13054 77 AQLEGD--ARPALGILPLGT-ANDFAT---AAGIP----LEPDKALKLAI 116 (300)
T ss_pred HhhccC--CCCcEEEEeCCc-HhHHHH---hcCCC----CCHHHHHHHHH
Confidence 432111 234565666676 223223 34888 57999988764
No 271
>PRK07475 hypothetical protein; Provisional
Probab=28.21 E-value=4e+02 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.1
Q ss_pred CeEEEEEcCccHHHHHHHHHHHCCCCC
Q 014588 292 GEIGCMVNGAGLAMATMDIIKLHGGTP 318 (422)
Q Consensus 292 g~vaiitngGG~gv~~~D~l~~~G~~~ 318 (422)
.+|||+|..+.. ++-+.++..|..+
T Consensus 123 ~kIGILtt~~t~--l~~~~l~~~Gi~~ 147 (245)
T PRK07475 123 QKVGILTADASS--LTPAHLLAVGVPP 147 (245)
T ss_pred CeEEEEeCCchh--hhHHHHHhCCCCC
Confidence 489999999974 6789999999863
No 272
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=28.05 E-value=4.3e+02 Score=26.27 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=42.3
Q ss_pred CCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcc
Q 014588 326 GNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLI 404 (422)
Q Consensus 326 g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~ 404 (422)
++.+.+. +..+-++|.++|++|+|+.+ . +..+.+.+++.++.+..+..++... ...+..+.+++.-+.-.
T Consensus 189 ~~~d~~~a~~~~~~lL~~~pdi~aI~~~--~-----~~~~~Ga~~Al~~~g~~~v~VvG~D--~~~~~~~~i~~G~i~~~ 259 (336)
T PRK15408 189 GYNDATKSLQTAEGILKAYPDLDAIIAP--D-----ANALPAAAQAAENLKRDKVAIVGFS--TPNVMRPYVKRGTVKEF 259 (336)
T ss_pred CCCcHHHHHHHHHHHHHHCCCCcEEEEC--C-----CccHHHHHHHHHhCCCCCEEEEEeC--CcHHHHHHHhcCCcceE
Confidence 3444444 55666777789999999952 1 1223456666666433332233333 34555566655333322
Q ss_pred cccCHHHHHH
Q 014588 405 TAEDLDDAAE 414 (422)
Q Consensus 405 vf~~~e~Av~ 414 (422)
++.+|...-.
T Consensus 260 ~~~~p~~~G~ 269 (336)
T PRK15408 260 GLWDVVQQGK 269 (336)
T ss_pred EecCHHHHHH
Confidence 3446655433
No 273
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=28.04 E-value=4.2e+02 Score=27.32 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=6.9
Q ss_pred EeeC-CCccccchh
Q 014588 251 LNFD-DNAAFRQKE 263 (422)
Q Consensus 251 i~ld-~~a~~r~~~ 263 (422)
+++. ++.+|||.+
T Consensus 11 vtiGGEtVLfrhE~ 24 (386)
T PF03599_consen 11 VTIGGETVLFRHEK 24 (386)
T ss_dssp EEEE--SSSSTTCS
T ss_pred EEECCcceeecCCc
Confidence 4443 455678765
No 274
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.97 E-value=1.9e+02 Score=23.39 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=35.1
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCC
Q 014588 337 FKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMT 402 (422)
Q Consensus 337 l~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip 402 (422)
++-+++++++|.+++..+.. .-.+-+..+++ .+++|++= ....+.++..+ ..++.|..
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~-----~h~~~~~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPS-----SHAEIAKKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HHHHHHHTTESEEEEESSGG-----GHHHHHHHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhcCCEEEEecCCc-----chHHHHHHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 77788889999999865532 23334444444 36788774 34444555444 44567776
No 275
>PRK10206 putative oxidoreductase; Provisional
Probab=27.94 E-value=2.4e+02 Score=28.24 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHH---HHHHHHcCCCccc
Q 014588 335 EAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQG---KRILKESGMTLIT 405 (422)
Q Consensus 335 ~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~---~~~L~~~Gip~~v 405 (422)
.-++-|++++++|+|+|..+.. .-.+-+.++++. +|+|++= ....+.+++ .+..+++|+.+.+
T Consensus 54 ~~~~ell~~~~iD~V~I~tp~~-----~H~~~~~~al~a---GkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v 120 (344)
T PRK10206 54 SDLDEVLNDPDVKLVVVCTHAD-----SHFEYAKRALEA---GKNVLVEKPFTPTLAEAKELFALAKSKGLTVTP 120 (344)
T ss_pred CCHHHHhcCCCCCEEEEeCCch-----HHHHHHHHHHHc---CCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 4577778899999999855422 223333344432 5666652 222223333 3345566776433
No 276
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=27.91 E-value=4.7e+02 Score=25.24 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCc
Q 014588 326 GNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTL 403 (422)
Q Consensus 326 g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~ 403 (422)
....++...++...++++=+.|-+++..+.+..+...-|+.+.. + .+.|.++..-++. ....+.|++.|+-+
T Consensus 41 aKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~---~--~~iP~IvI~D~p~-~K~~d~l~~~g~GY 112 (277)
T PRK00994 41 AKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILK---A--AGIPCIVIGDAPG-KKVKDAMEEQGLGY 112 (277)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHH---h--cCCCEEEEcCCCc-cchHHHHHhcCCcE
Confidence 34556677777777776656667776666554444555555543 3 4678877655542 22336788887653
No 277
>PRK00110 hypothetical protein; Validated
Probab=27.64 E-value=2.2e+02 Score=27.33 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=44.0
Q ss_pred CeEEEEEcCccHHHHHHHHHHHCCCC---------CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEc
Q 014588 292 GEIGCMVNGAGLAMATMDIIKLHGGT---------PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNI 353 (422)
Q Consensus 292 g~vaiitngGG~gv~~~D~l~~~G~~---------~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i 353 (422)
+.+-|+|.---+..+ .++|+..|++ |.|++++... ..+.+.+.++.|.++++|..|.-|+
T Consensus 167 ~~~~i~~~p~~~~~v-~~~L~~~g~~~~~sei~~~P~~~v~l~~e-~~~~~~~li~~Led~dDVq~Vy~N~ 235 (245)
T PRK00110 167 ESFEVITAPEDFEAV-RDALEAAGLEAESAEVTMIPQNTVELDEE-TAEKLLKLIDALEDLDDVQNVYHNA 235 (245)
T ss_pred CeEEEEECHHHHHHH-HHHHHHcCCCeeeeEEEEecCCCcccCHH-HHHHHHHHHHHHhcCCCcceEeECC
Confidence 456677766555443 4777888873 7899998432 2446889999999999999999774
No 278
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=27.22 E-value=5.5e+02 Score=24.39 Aligned_cols=85 Identities=19% Similarity=0.112 Sum_probs=45.2
Q ss_pred CCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEE-EEeCCCCHHHHHHHHHHcCCCc
Q 014588 326 GNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVV-VRLEGTNVDQGKRILKESGMTL 403 (422)
Q Consensus 326 g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv-v~~~g~~~~~~~~~L~~~Gip~ 403 (422)
+..+.+. +..+.+.+.++|++++|+.. .+..+.++++++++.+....|. +...+ ..+..+.+++.-+..
T Consensus 165 ~~~~~~~~~~~~~~~L~~~~~~~ai~~~-------~d~~a~ga~~al~~~g~~~~i~vvg~d~--~~~~~~~l~~g~i~~ 235 (302)
T TIGR02637 165 GDDDAQKSYQEAQGLLKSYPNLKGIIAP-------TTVGIKAAAQAVSDAKLIGKVKLTGLGL--PSEMAKYVKNGTVKA 235 (302)
T ss_pred CCchHHHHHHHHHHHHHhCCCccEEEeC-------CCchHHHHHHHHHhcCCCCCEEEEEcCC--cHHHHHHHhcCccce
Confidence 3444444 44444555567899999851 2445667777777643222333 33433 345566666543343
Q ss_pred ccccCHH----HHHHHHHHH
Q 014588 404 ITAEDLD----DAAEKAVKA 419 (422)
Q Consensus 404 ~vf~~~e----~Av~al~~~ 419 (422)
.+..+|. .+++.+.++
T Consensus 236 ~~~q~p~~~G~~~v~~~~~~ 255 (302)
T TIGR02637 236 FALWNPIDLGYSAAYTAYRL 255 (302)
T ss_pred EEEeCHHHHHHHHHHHHHHH
Confidence 3455663 455554443
No 279
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=26.91 E-value=2.3e+02 Score=24.55 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC----ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM----KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 318 ~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~----~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
.+.|+..--.-........+..+.++-+++.++|-.|.... .....++.+++.+++. .+.||..+-.--...++.
T Consensus 27 ~a~pl~~i~~~~~~~~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~-~~~~v~~~DEr~TT~~A~ 105 (138)
T PRK00109 27 TAQPLETIKRNNGTPDWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGR-FGLPVVLVDERLSTVEAE 105 (138)
T ss_pred EEcCEEEEEcCCCchHHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHH-hCCCEEEEcCCcCHHHHH
Confidence 35566543222222234556666677789999985543322 2223334444444432 367887663333467888
Q ss_pred HHHHHcCCC
Q 014588 394 RILKESGMT 402 (422)
Q Consensus 394 ~~L~~~Gip 402 (422)
+.|.+.|.+
T Consensus 106 ~~l~~~~~~ 114 (138)
T PRK00109 106 RALADVGSR 114 (138)
T ss_pred HHHHHcCCC
Confidence 889888875
No 280
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=26.88 E-value=86 Score=29.66 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=22.1
Q ss_pred CCCeEEEEEcC---ccHHHHHHHHHHHCCC
Q 014588 290 LDGEIGCMVNG---AGLAMATMDIIKLHGG 316 (422)
Q Consensus 290 ~~g~vaiitng---GG~gv~~~D~l~~~G~ 316 (422)
-.|++.+|..+ +|.++++.=.+-..|.
T Consensus 7 ~~g~vl~i~Gs~~~~GA~~la~~~a~~~G~ 36 (254)
T cd01171 7 SRGRVLVIGGSRGYTGAAYLAALAALRAGA 36 (254)
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHcc
Confidence 35789999875 6999999988888885
No 281
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=26.63 E-value=2.1e+02 Score=28.27 Aligned_cols=62 Identities=5% Similarity=-0.053 Sum_probs=36.6
Q ss_pred CeEEEEEcCccHH-----HHHHHHHHHCCCCCCCe------eeccCCCCHHHHHHHHHHH-HcCCCccEEEEEcc
Q 014588 292 GEIGCMVNGAGLA-----MATMDIIKLHGGTPANF------LDVGGNASEGQVVEAFKIL-TSDEKVKAILVNIF 354 (422)
Q Consensus 292 g~vaiitngGG~g-----v~~~D~l~~~G~~~~NP------lDl~g~~~~~~~~~al~~l-l~d~~vd~ilv~i~ 354 (422)
.+|+||+.|++.. -.+.+.++..|.++..+ -+.....+.++..+..+.+ +.|| +|+|+....
T Consensus 2 ~~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rG 75 (305)
T PRK11253 2 SLFHLIAPSGYPIDQAAALRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRG 75 (305)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecc
Confidence 3699999998752 12356688889854211 1122333344455444443 4889 999986444
No 282
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.57 E-value=4.1e+02 Score=25.69 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=44.5
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC-ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHH---H
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM-KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKR---I 395 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~-~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~---~ 395 (422)
|.|= |+.+.+.+.+-++.+.+ .++|+|+++-..| .. -+.+=-..+++...+. .+ +|++..+..+..++.+ .
T Consensus 11 Pf~~-g~iD~~~~~~li~~l~~-~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~-~~-~vi~gvg~~~~~~ai~~a~~ 86 (279)
T cd00953 11 PFTG-NKIDKEKFKKHCENLIS-KGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDI-TD-KVIFQVGSLNLEESIELARA 86 (279)
T ss_pred CcCC-CCcCHHHHHHHHHHHHH-cCCcEEEEcccCCCcccCCHHHHHHHHHHHHHH-cC-CEEEEeCcCCHHHHHHHHHH
Confidence 5554 88999999999999886 7999999854322 22 1222223333333332 22 4666666655555544 3
Q ss_pred HHHcC
Q 014588 396 LKESG 400 (422)
Q Consensus 396 L~~~G 400 (422)
.++.|
T Consensus 87 a~~~G 91 (279)
T cd00953 87 AKSFG 91 (279)
T ss_pred HHHcC
Confidence 44455
No 283
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=26.49 E-value=5.7e+02 Score=26.97 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE
Q 014588 304 AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR 383 (422)
Q Consensus 304 gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~ 383 (422)
+....+++.+.|+.++-.-=+.|... .+-+.|+++|++|.|.. .| +....+.|.+...+ .-||++.-
T Consensus 189 ~~~l~~~~~~aglP~gvv~vv~g~~~-----~~~~~l~~~~~v~~v~F--TG----S~~~G~~i~~~aa~--~l~~~~lE 255 (482)
T PRK11241 189 ALALAELAIRAGIPAGVFNVVTGSAG-----AVGGELTSNPLVRKLSF--TG----STEIGRQLMEQCAK--DIKKVSLE 255 (482)
T ss_pred HHHHHHHHHHcCCCcccEEEEecCCc-----hhHHHHhcCCCCCEEEE--EC----cHHHHHHHHHHHHh--cCCcEEEE
Confidence 34456777777775432222233221 34577888999998873 33 24455566555444 34566555
Q ss_pred eCCC
Q 014588 384 LEGT 387 (422)
Q Consensus 384 ~~g~ 387 (422)
++|.
T Consensus 256 lGGk 259 (482)
T PRK11241 256 LGGN 259 (482)
T ss_pred CCCC
Confidence 5553
No 284
>PRK09526 lacI lac repressor; Reviewed
Probab=26.44 E-value=5.2e+02 Score=25.02 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=45.8
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -.-+++...|+.+... ..++.+.+. +..+.+.+...+.+++|++ ..+.+|
T Consensus 182 ~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~A 252 (342)
T PRK09526 182 QRIALLAGPESSVSARLRLAGWLEYLTDYQLQPIAV--REGDWSAMSGYQQTLQMLREGPVPSAILV-------ANDQMA 252 (342)
T ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHcCCCcceE--EeCCCchHHHHHHHHHHhcCCCCCcEEEE-------cCcHHH
Confidence 48999875433211 1346777788753211 234445444 4444444444577898884 246788
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
.++++++++.+..
T Consensus 253 ~g~~~al~~~g~~ 265 (342)
T PRK09526 253 LGVLRALHESGLR 265 (342)
T ss_pred HHHHHHHHHcCCC
Confidence 8999998886543
No 285
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=26.38 E-value=5.7e+02 Score=24.32 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=59.8
Q ss_pred HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeC
Q 014588 306 ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLE 385 (422)
Q Consensus 306 ~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~ 385 (422)
+.+++++..|. +-+|+|-+.+.+.|-++.+-.- -|.|-. ..-.+.+-.--+.+++.+++.+.+-|+.+..|
T Consensus 123 iV~~ml~~aGf---evidLG~dvP~e~fve~a~e~k----~d~v~~--SalMTttm~~~~~viE~L~eeGiRd~v~v~vG 193 (227)
T COG5012 123 IVATMLEAAGF---EVIDLGRDVPVEEFVEKAKELK----PDLVSM--SALMTTTMIGMKDVIELLKEEGIRDKVIVMVG 193 (227)
T ss_pred HHHHHHHhCCc---EEEecCCCCCHHHHHHHHHHcC----CcEEec--hHHHHHHHHHHHHHHHHHHHcCCccCeEEeec
Confidence 34467777765 4589999999998877765543 233321 11111111224677788887665667777777
Q ss_pred CCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 386 GTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 386 g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
|....+. .-.+-|-- ..+.+...|++.+-.+.
T Consensus 194 GApvtq~--~a~~iGAD-~~~~dAs~Av~~ak~~l 225 (227)
T COG5012 194 GAPVTQD--WADKIGAD-AYAEDASDAVKKAKAIL 225 (227)
T ss_pred CccccHH--HHHHhCCC-ccCcCHHHHHHHHHHHh
Confidence 7632222 22444554 03457888887765543
No 286
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.73 E-value=5.3e+02 Score=23.73 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCc--cEEEEEccCCCCChHHHHHHHHHHHHhcC
Q 014588 333 VVEAFKILTSDEKV--KAILVNIFGGIMKCDVIASGIVNAAKQVA 375 (422)
Q Consensus 333 ~~~al~~ll~d~~v--d~ilv~i~~~~~~~~~~a~~i~~~~~~~~ 375 (422)
+..+-+.+.++|++ +++++. .+.+|.++++++++.+
T Consensus 169 ~~~~~~~l~~~~~~~~~ai~~~-------~d~~a~g~~~~l~~~g 206 (273)
T cd06305 169 AAQVEAVLKKYPKGGIDAIWAA-------WDEFAKGAKQALDEAG 206 (273)
T ss_pred HHHHHHHHHHCCCcccCeEEEc-------ChhhhHHHHHHHHHcC
Confidence 44444555567888 888752 3567788888888754
No 287
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=25.51 E-value=2e+02 Score=28.07 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred CeEEEEEcCccHH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+.. --..+++..+|+.....+-..++.+.+.-.++++.++ ..+..++|+. ..|.+|
T Consensus 177 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~nD~~A 249 (343)
T PRK10727 177 TRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVAC-------YNDSMA 249 (343)
T ss_pred ccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-------cCcHHH
Confidence 4799886432211 1124778888876533222345555554444555555 4567888874 247788
Q ss_pred HHHHHHHHhcCCCCc
Q 014588 365 SGIVNAAKQVALKVP 379 (422)
Q Consensus 365 ~~i~~~~~~~~~~kp 379 (422)
.++++++++.+...|
T Consensus 250 ~g~~~al~~~G~~vP 264 (343)
T PRK10727 250 AGAMGVLNDNGIDVP 264 (343)
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999988654334
No 288
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=25.41 E-value=1.5e+02 Score=30.30 Aligned_cols=103 Identities=24% Similarity=0.278 Sum_probs=58.8
Q ss_pred hcccCCCHHHHHHHHHHcCCC----CCCeeeeCC---------------HHHHHHHHhH-h--CCC--CCe-EEEEEeec
Q 014588 25 LRRLNIHEYQGAELMAKYGIN----VPKGLAVAS---------------VDEVKKAIQD-A--FPD--HKE-LVVKSQIL 79 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIp----vp~~~~~~s---------------~~ea~~~a~~-l--~~g--~~P-vVlK~~~~ 79 (422)
..+-..++.-++++-+..||. .|-+..+.. .|.+.+..++ . + | ..| |++|++.
T Consensus 189 S~hF~~Y~~va~eF~~~~~IDPWlInp~f~~c~~vdF~~~~G~e~lA~~Vd~~L~kir~KY~eY-gI~e~PfViVKADa- 266 (403)
T TIGR02049 189 SNHFEAYQEVASEFAKLIGIDPWLINPYFEKCDGIDFDDREGEDALATAVDQVLSKTQKKYEEY-GIHTQPYVIVKADA- 266 (403)
T ss_pred cchhHHHHHHHHHHHHHhCCCcccccHhhhccCCcCCCccccHHHHHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCC-
Confidence 334457788899999999986 232222221 2222222211 1 1 1 135 5789984
Q ss_pred cCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEE
Q 014588 80 AGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144 (422)
Q Consensus 80 ~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~ 144 (422)
|.=| =||... |.+|+...-++-..+-. ....|..++.|+|||-+. ..|.+
T Consensus 267 -GTYG---------MGImtv~~~~ev~~LNrK~RnKM~----~~Keg~~V~~VIiQEGV~-T~E~~ 317 (403)
T TIGR02049 267 -GTYG---------MGIMTATSGEEVLGLNRKERNKMA----KVKEGLEVSEVIIQEGVY-TFEMF 317 (403)
T ss_pred -CCCC---------ceEEEecCHHHHHHhhhhhhhhcc----cccCCCccceEEEecCcc-eeeee
Confidence 3222 268888 99998875444333221 113577889999999886 45543
No 289
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.34 E-value=3.5e+02 Score=25.57 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=35.2
Q ss_pred eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCC
Q 014588 322 LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGM 401 (422)
Q Consensus 322 lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gi 401 (422)
++++-..+...|.-+-+. . .|++|+||+.+. .. ..-++.+.+- ++ .++||+.. +....+..|+.-|+
T Consensus 158 ~eigr~~P~~~y~lAk~~-~-~~~~DaiFiSCT-nl-Rt~eii~~lE---~~--~G~PVvsS----N~AT~W~~Lr~~g~ 224 (238)
T COG3473 158 LEIGRQEPWAVYRLAKEV-F-TPDADAIFISCT-NL-RTFEIIEKLE---RD--TGVPVVSS----NQATLWMALRLIGL 224 (238)
T ss_pred chhcccChHHHHHHHHHh-c-CCCCCeEEEEee-cc-ccHHHHHHHH---HH--hCCceeec----cHHHHHHHHHHcCC
Confidence 344443333334444443 3 799999998532 21 1223333332 22 58999852 34556667777665
No 290
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.34 E-value=1.9e+02 Score=27.10 Aligned_cols=61 Identities=26% Similarity=0.310 Sum_probs=42.0
Q ss_pred CCCeEEEEEcCc---cHHHHHHHHHHHCCCCC----C------------------CeeeccCCCCHHHHHHHHHHHHcC-
Q 014588 290 LDGEIGCMVNGA---GLAMATMDIIKLHGGTP----A------------------NFLDVGGNASEGQVVEAFKILTSD- 343 (422)
Q Consensus 290 ~~g~vaiitngG---G~gv~~~D~l~~~G~~~----~------------------NPlDl~g~~~~~~~~~al~~ll~d- 343 (422)
+++++++||-++ |.|-..+..+...|.++ . -++|++ +.+.+.++++.+.+.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~---~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVA---SDESIERAFATIKERV 81 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCC---CHHHHHHHHHHHHHHh
Confidence 578899999875 99999999999999632 0 123432 234566677666543
Q ss_pred CCccEEEEEc
Q 014588 344 EKVKAILVNI 353 (422)
Q Consensus 344 ~~vd~ilv~i 353 (422)
..+|.++.|.
T Consensus 82 g~iD~lv~nA 91 (252)
T PRK06079 82 GKIDGIVHAI 91 (252)
T ss_pred CCCCEEEEcc
Confidence 6789877654
No 291
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=25.32 E-value=5.3e+02 Score=23.55 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCeEEEEEcCcc---H-HHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 291 DGEIGCMVNGAG---L-AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 291 ~g~vaiitngGG---~-gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
++++.+.|..|= + ..+.++.++..|..+ +|++.+.+.+.+.++++. .+.|.|.+..... ........
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~v---i~lG~~~p~~~l~~~~~~----~~~d~v~lS~~~~--~~~~~~~~ 152 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEV---IDLGRDVPPEEFVEAVKE----HKPDILGLSALMT--TTMGGMKE 152 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEE---EECCCCCCHHHHHHHHHH----cCCCEEEEecccc--ccHHHHHH
Confidence 346655555442 2 356678999999886 899988888876666533 4566666543322 22344566
Q ss_pred HHHHHHhcCCCCcEEEEeCCCC-HHHHHHHHHHcCCCcccccCHHHHHHH
Q 014588 367 IVNAAKQVALKVPVVVRLEGTN-VDQGKRILKESGMTLITAEDLDDAAEK 415 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~-~~~~~~~L~~~Gip~~vf~~~e~Av~a 415 (422)
+++.+++......+-+..||.. .++ .-++-|.- ..-.|..+|++.
T Consensus 153 ~i~~lr~~~~~~~~~i~vGG~~~~~~---~~~~~GaD-~~~~da~~av~~ 198 (201)
T cd02070 153 VIEALKEAGLRDKVKVMVGGAPVNQE---FADEIGAD-GYAEDAAEAVAI 198 (201)
T ss_pred HHHHHHHCCCCcCCeEEEECCcCCHH---HHHHcCCc-EEECCHHHHHHH
Confidence 6677766433112323444542 222 23344654 123355555543
No 292
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=25.26 E-value=56 Score=25.26 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=20.4
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeeeeCC
Q 014588 25 LRRLNIHEYQGAELMAKYGINVPKGLAVAS 54 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s 54 (422)
.......|+...++.++.||++|++.++..
T Consensus 39 ~~~~~~nE~~~~~lA~~~Gi~v~~~~l~~~ 68 (81)
T PF07805_consen 39 DPDLVENEYACMRLARAAGIPVPETRLIRF 68 (81)
T ss_dssp ETTHHHHHHHHHHHHHHTT-----EEEEEE
T ss_pred ccchHHHHHHHHHHHHHcCCCcCceEEEEE
Confidence 444568899999999999999999998653
No 293
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=25.20 E-value=5.5e+02 Score=23.71 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=32.1
Q ss_pred cCCCCHHHH-HHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 325 GGNASEGQV-VEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 325 ~g~~~~~~~-~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
.++.+.+.. ..+-+.+.++|++++|++. .+. |.++++++++.+...|.++....
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~-------~d~-A~g~~~al~~~g~~~p~v~g~d~ 218 (272)
T cd06300 164 YGDWDQAVAQKAVADFLASNPDVDGIWTQ-------GGD-AVGAVQAFEQAGRDIPPVTGEDE 218 (272)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcCEEEec-------CCC-cHHHHHHHHHcCCCCcEEEeeCC
Confidence 344555544 4444444567889988852 234 67888888876555665554443
No 294
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=24.93 E-value=6.2e+02 Score=24.30 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCC-------ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCH----HHHHHHHH
Q 014588 329 SEGQVVEAFKILTSDEKVKAILVNIFGGIM-------KCDVIASGIVNAAKQVALKVPVVVRLEGTNV----DQGKRILK 397 (422)
Q Consensus 329 ~~~~~~~al~~ll~d~~vd~ilv~i~~~~~-------~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~----~~~~~~L~ 397 (422)
+.+.+.++.+.+.+. ++|+|-+|+..... ........+++..++. .++|+.+.+.+... .+..+.+.
T Consensus 109 ~~~~~~~~a~~~~~~-G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~ 186 (289)
T cd02810 109 SKEDYVELARKIERA-GAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAE 186 (289)
T ss_pred CHHHHHHHHHHHHHh-CCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 567788888887654 78998887643211 1223445555555542 37899987665422 33455677
Q ss_pred HcCCC
Q 014588 398 ESGMT 402 (422)
Q Consensus 398 ~~Gip 402 (422)
+.|+-
T Consensus 187 ~~Gad 191 (289)
T cd02810 187 RAGAD 191 (289)
T ss_pred HcCCC
Confidence 77754
No 295
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=24.79 E-value=3.3e+02 Score=27.94 Aligned_cols=77 Identities=21% Similarity=0.159 Sum_probs=47.6
Q ss_pred eEEEEEcCccHHHH-HHHHHHHCCCC-----C-------------CC--eeec-----cCCCCHHHHHHHHHHHHcCCCc
Q 014588 293 EIGCMVNGAGLAMA-TMDIIKLHGGT-----P-------------AN--FLDV-----GGNASEGQVVEAFKILTSDEKV 346 (422)
Q Consensus 293 ~vaiitngGG~gv~-~~D~l~~~G~~-----~-------------~N--PlDl-----~g~~~~~~~~~al~~ll~d~~v 346 (422)
+=.++|+|+..|+. ++.++..-|-. | +. ++.+ ....+.+.+.+++ . +++
T Consensus 90 ~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i----~-~kt 164 (393)
T COG0436 90 EEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAI----T-PKT 164 (393)
T ss_pred CeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhc----C-ccc
Confidence 55788999988887 56777777631 1 22 2332 2233333333333 3 389
Q ss_pred cEEEEEccCCCC---ChHHHHHHHHHHHHhc
Q 014588 347 KAILVNIFGGIM---KCDVIASGIVNAAKQV 374 (422)
Q Consensus 347 d~ilv~i~~~~~---~~~~~a~~i~~~~~~~ 374 (422)
++|++|.+...+ -+.+..+.|++.++++
T Consensus 165 k~i~ln~P~NPTGav~~~~~l~~i~~~a~~~ 195 (393)
T COG0436 165 KAIILNSPNNPTGAVYSKEELKAIVELAREH 195 (393)
T ss_pred eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc
Confidence 999998765444 4566778888888773
No 296
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=24.19 E-value=4.5e+02 Score=22.42 Aligned_cols=84 Identities=15% Similarity=0.005 Sum_probs=48.1
Q ss_pred CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC----ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM----KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 318 ~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~----~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
.++|+..--..........+..+.+.-+++.++|-.|-... .....++.+++.+++. .+.||..+----...++.
T Consensus 21 ~a~pl~~i~~~~~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~-~~~~v~~~DEr~TT~~A~ 99 (130)
T TIGR00250 21 TAQGIPTIKAQDGEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGR-FGVPVVLWDERLSTVEAE 99 (130)
T ss_pred EEeceEEEEecCCcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHH-hCCCEEEEcCCcCHHHHH
Confidence 45666654332233444666677777789999985443222 2223344444444331 367887663333467888
Q ss_pred HHHHHcCCC
Q 014588 394 RILKESGMT 402 (422)
Q Consensus 394 ~~L~~~Gip 402 (422)
+.|.+.|+.
T Consensus 100 ~~l~~~g~~ 108 (130)
T TIGR00250 100 SGLFARGGF 108 (130)
T ss_pred HHHHHcCCC
Confidence 889888875
No 297
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=24.16 E-value=1.5e+02 Score=31.14 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=43.1
Q ss_pred cCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC---CHHHHHHHHHHHhcc
Q 014588 42 YGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV---KKEEVEDLAGKMLGQ 114 (422)
Q Consensus 42 ~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~---~~ee~~~a~~~l~~~ 114 (422)
--+|.++++.|..++|.......+ . .+|+|+....| . +|..++ +.+|..+..+++..+
T Consensus 342 ~lL~nv~T~~c~~~~el~~VL~~l--~--~lViK~~~~~g---g--------~~~lvGpa~s~~e~a~~~~~i~a~ 402 (488)
T COG2308 342 PLLPNVPTYWCGEPDELEHVLANL--S--ELVIKPVEGSG---G--------YGMLVGPAASKAELAAFAERIKAD 402 (488)
T ss_pred cccCCCCeeecCCHHHHHHHHhch--h--hheEeeeccCC---C--------CcceeccccCHHHHHHHHHHHHhC
Confidence 456778899999999999999998 3 79999964332 1 445555 888888777777654
No 298
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=23.97 E-value=5.7e+02 Score=23.52 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCCCCeeec--cCCCCHHHHHHHHHHHHcCCCccEEEEE
Q 014588 303 LAMATMDIIKLHGGTPANFLDV--GGNASEGQVVEAFKILTSDEKVKAILVN 352 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl--~g~~~~~~~~~al~~ll~d~~vd~ilv~ 352 (422)
-+-+....+...|....- ++. ..+ +.+.+.++++.++++.++|.|++.
T Consensus 24 ng~~L~~~L~~~G~~g~~-v~~~iVpD-d~~~I~~aL~~a~~~~~~DlIITT 73 (193)
T PRK09417 24 GIPALEEWLASALTSPFE-IETRLIPD-EQDLIEQTLIELVDEMGCDLVLTT 73 (193)
T ss_pred hHHHHHHHHHHcCCCCce-EEEEECCC-CHHHHHHHHHHHhhcCCCCEEEEC
Confidence 456677889988764321 222 222 234578888888766778988864
No 299
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=23.86 E-value=7.5e+02 Score=24.86 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=49.4
Q ss_pred CeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCC--CccEEEEEccCCCCChHHHHHHHHH
Q 014588 292 GEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDE--KVKAILVNIFGGIMKCDVIASGIVN 369 (422)
Q Consensus 292 g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~--~vd~ilv~i~~~~~~~~~~a~~i~~ 369 (422)
.++.++|..+-..-...|.++..|....-+-++.++++.+.+.++.+.+.+.. ++|.|+- +.||. .-+.|+.+.-
T Consensus 26 ~~~lvvtd~~~~~~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIa-iGGGS--~iD~AKaia~ 102 (347)
T cd08184 26 DPAVFFVDDVFQGKDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVG-IGGGS--TLDVAKAVSN 102 (347)
T ss_pred CeEEEEECcchhhhHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEE-eCCcH--HHHHHHHHHH
Confidence 35677774333333456778888887666778889999999999998887642 8898874 33332 3345555543
No 300
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=23.70 E-value=2e+02 Score=29.36 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 309 DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 309 D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
-+|+..|+.. --+.+..+.+.+.+.+.++.+-+|++||+|+|..+.
T Consensus 126 K~~e~~GI~~-~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPL 171 (364)
T PLN02616 126 KACDSVGINS-FEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPL 171 (364)
T ss_pred HHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCC
Confidence 4666677653 223455667777888999999999999999996653
No 301
>PRK05849 hypothetical protein; Provisional
Probab=23.69 E-value=9.5e+02 Score=27.30 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=60.5
Q ss_pred HHHHHHHHHH--cCCCCCCeeeeCC------HHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcce--EEEC--
Q 014588 32 EYQGAELMAK--YGINVPKGLAVAS------VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGG--VHIV-- 99 (422)
Q Consensus 32 e~~ak~lL~~--~GIpvp~~~~~~s------~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GG--V~l~-- 99 (422)
+.+.-.-|+. -|.++|+.++++- .+.+.+.....|.+ .|++|...... -.+.. .+-+|. -.++
T Consensus 11 KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~-~~laVRSSa~~-ED~~~---~S~AGq~~S~lnV~ 85 (783)
T PRK05849 11 KAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPA-DKLIVRSSSRS-EDSSS---SSNAGAFLSILNVN 85 (783)
T ss_pred HHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCC-CeEEEECCCcc-cCCCc---CccccCceeEecCC
Confidence 4455556666 7888888877754 33343333332213 58999863221 00010 011332 3345
Q ss_pred --CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCC
Q 014588 100 --KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (422)
Q Consensus 100 --~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f 153 (422)
+.+++.+|++..+.+-. . .. -..|+||+|+....=-=|..++||..
T Consensus 86 ~~~~~~L~~AI~~V~aS~~---~--~~---~~aVlVQ~MV~~~~~SGV~FTrdP~t 133 (783)
T PRK05849 86 ADSKDQLLKAIEKVIASYG---T--SK---DDEILVQPMLEDIVLSGVAMSRDPES 133 (783)
T ss_pred CCcHHHHHHHHHHHHHhhC---C--CC---CCeEEEEeCccCCCceEEEEECCCCC
Confidence 23489999988876531 0 11 24799999996211112788899887
No 302
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=23.63 E-value=3.4e+02 Score=24.92 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHcC-CCccEEEEEccCCCCChHHHHHHHHHHHHhcCC
Q 014588 328 ASEGQVVEAFKILTSD-EKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 376 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d-~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~ 376 (422)
.+.+.-.+.++.++++ |+.+++++ ..+.+|.++.+++++.+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~~~~~~l~~~g~ 199 (260)
T cd06286 157 FTIEDGERIGHQLLKMKDRPDAIFT-------GSDEVAAGIITEAKKQGI 199 (260)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEE-------cchHHHHHHHHHHHHcCC
Confidence 3444445566666654 78898874 236778889998888653
No 303
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=23.59 E-value=28 Score=28.30 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHh
Q 014588 34 QGAELMAKYGINVPKGLAVASVDEVKKAIQDA 65 (422)
Q Consensus 34 ~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l 65 (422)
.-.+|.+.||.|+|......+++|+.++....
T Consensus 17 ~~~~l~~~~g~pt~~~l~~~~~~el~~~i~~~ 48 (108)
T PF00730_consen 17 IYRRLFERYGFPTPEALAEASEEELRELIRPL 48 (108)
T ss_dssp HHHHHHHHHSCSSHHHHHCSHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCHHHHHhCCHHHHHHHhhcc
Confidence 45678899999999988888889988887666
No 304
>PRK12378 hypothetical protein; Provisional
Probab=23.54 E-value=2.6e+02 Score=26.76 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=44.3
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCC---------CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEE
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGT---------PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN 352 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~---------~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~ 352 (422)
++.+-|+|..--+..+ .+.|+..|++ |.|++++... ..+.+.+.++.|.++++|..|.-|
T Consensus 165 ~~~~~i~t~p~~~~~v-~~~L~~~g~~~~~sei~~~P~~~v~l~~e-~~~~~~~li~~Led~dDVq~Vy~N 233 (235)
T PRK12378 165 EGTITVYTDPTDFHKV-KKALEAAGIEFLVAELEMIPQNPVELSGE-DLEQFEKLLDALEDDDDVQNVYHN 233 (235)
T ss_pred CCeEEEEECHHHHHHH-HHHHHHcCCCceeeEEEEecCCCccCCHH-HHHHHHHHHHHHhcCCCccceeeC
Confidence 3456777777666544 4777889973 7899998542 345688999999999999988755
No 305
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=23.21 E-value=4.8e+02 Score=23.96 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=42.5
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++..-+.... ..+++...|.......-..+..+.+.-.+.++.++ ..++.++|++ ..+..|
T Consensus 119 ~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-------~~d~~a 191 (270)
T cd01545 119 RRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAEALLALPDRPTAIFA-------SNDDMA 191 (270)
T ss_pred ceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCEEEE-------cCcHHH
Confidence 489998754443211 23455566665421111233334333333444444 4577888884 135778
Q ss_pred HHHHHHHHhcCC
Q 014588 365 SGIVNAAKQVAL 376 (422)
Q Consensus 365 ~~i~~~~~~~~~ 376 (422)
.++.+++++.+.
T Consensus 192 ~~~~~~~~~~g~ 203 (270)
T cd01545 192 AGVLAVAHRRGL 203 (270)
T ss_pred HHHHHHHHHcCC
Confidence 888888887543
No 306
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=23.14 E-value=4e+02 Score=26.74 Aligned_cols=79 Identities=19% Similarity=0.087 Sum_probs=44.8
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE---eCCCCH---HHHHHHHHHcCCCccccc-CH
Q 014588 337 FKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR---LEGTNV---DQGKRILKESGMTLITAE-DL 409 (422)
Q Consensus 337 l~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~---~~g~~~---~~~~~~L~~~Gip~~vf~-~~ 409 (422)
++.+++ .++++|++-.+|...-.....+.|.++.++ +.|||++ ..|.-. -++-..|.+.|+- ...+ ++
T Consensus 228 l~~~~~-~~~~GiVl~~~G~Gn~p~~~~~~l~~a~~~---Gi~VV~~Sq~~~G~v~~~~Y~~g~~l~~~G~i-~~g~lt~ 302 (336)
T TIGR00519 228 IRNYLS-KGYKGIVIEGTGLGHAPQNKLQELQEASDR---GVVVVMTTQCLNGRVNMNVYSTGRRLLQAGVI-GGEDMLP 302 (336)
T ss_pred HHHHHh-CCCCEEEEeeECCCCCCHHHHHHHHHHHHC---CCEEEEeCCCCCCccCcccccchhhHHhCCEE-ECCCCCH
Confidence 344444 358999986655433233456666665543 7898874 333211 1233467778862 2444 68
Q ss_pred HHHHHHHHHHh
Q 014588 410 DDAAEKAVKAI 420 (422)
Q Consensus 410 e~Av~al~~~~ 420 (422)
|.|.-.|+.+.
T Consensus 303 e~A~~kL~~~L 313 (336)
T TIGR00519 303 EVALVKLMWLL 313 (336)
T ss_pred HHHHHHHHHHH
Confidence 87776665543
No 307
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=23.03 E-value=7.5e+02 Score=26.93 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCCC----CCe-----------eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGTP----ANF-----------LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~~----~NP-----------lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
++++.| ...|-.|-..+..+...|.+. .|| -=+-||++.....+... =.+.|.+++...
T Consensus 400 ~~~vII-~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~ag----i~~A~~vv~~~~- 473 (601)
T PRK03659 400 KPQVII-VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAG----AEKAEAIVITCN- 473 (601)
T ss_pred cCCEEE-ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcC----CccCCEEEEEeC-
Confidence 445544 445668999999999988742 122 11345655543322221 135666665332
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCc
Q 014588 356 GIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTL 403 (422)
Q Consensus 356 ~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~ 403 (422)
.++....++...++..++.+|+++... .+..+.|++.|.-.
T Consensus 474 ----d~~~n~~i~~~~r~~~p~~~IiaRa~~---~~~~~~L~~~Ga~~ 514 (601)
T PRK03659 474 ----EPEDTMKIVELCQQHFPHLHILARARG---RVEAHELLQAGVTQ 514 (601)
T ss_pred ----CHHHHHHHHHHHHHHCCCCeEEEEeCC---HHHHHHHHhCCCCE
Confidence 345555677777776567788887644 35556788888863
No 308
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=22.98 E-value=2.3e+02 Score=28.09 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEe---CCC-C--HHHHHHHHHHcCCCcccccC
Q 014588 335 EAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL---EGT-N--VDQGKRILKESGMTLITAED 408 (422)
Q Consensus 335 ~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~---~g~-~--~~~~~~~L~~~Gip~~vf~~ 408 (422)
..++.++ +.++++++-.+|.......+.+.+.++.++ +.|||++. .|. . ....-..+.+.|+-.--+-+
T Consensus 216 ~~l~~~~--~~~~GlVl~~~G~Gn~~~~~~~~l~~a~~~---gipVV~~sr~~~G~v~~~~y~~~~~l~~~Gvi~~g~lt 290 (313)
T PF00710_consen 216 ELLDAAL--AGAKGLVLEGYGAGNVPPALLEALARAVER---GIPVVVTSRCPSGGVDYGYYGSGRDLAEAGVISGGDLT 290 (313)
T ss_dssp HHHHHHH--TT-SEEEEEEBTTTBSSHHHHHHHHHHHHT---TSEEEEEESSSCS-BBTTSSCTSSHHHHCTEEE-TT--
T ss_pred HHHHHHh--ccCCEEEEeccCCCCCCHHHHHHHHHHHhc---CceEEEecccccCCcccccccchhhhhhCCEEECCCCC
Confidence 3445555 349999997776555556677777776643 78998762 222 1 11223467788874223346
Q ss_pred HHHHHHHHHHHh
Q 014588 409 LDDAAEKAVKAI 420 (422)
Q Consensus 409 ~e~Av~al~~~~ 420 (422)
++.|.-.|+-+.
T Consensus 291 ~ekA~~kL~~~L 302 (313)
T PF00710_consen 291 PEKARIKLMLAL 302 (313)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 777766665543
No 309
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=22.95 E-value=6.8e+02 Score=24.24 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHcC-CCccEEEEEccCCCC--------ChHHHHHHHHHHHHhcCCCCcEEEEeCCC--CHHHHHHHH
Q 014588 328 ASEGQVVEAFKILTSD-EKVKAILVNIFGGIM--------KCDVIASGIVNAAKQVALKVPVVVRLEGT--NVDQGKRIL 396 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d-~~vd~ilv~i~~~~~--------~~~~~a~~i~~~~~~~~~~kpivv~~~g~--~~~~~~~~L 396 (422)
.+.+.+.++.+.+.+- +.+|+|-+|+.-+.. ...+....+++..++. .++||.+.+..+ ...+..+.+
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~vKi~~~~~~~~~~a~~l 178 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFAKLSPNVTDITEIAKAA 178 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEECCCChhhHHHHHHHH
Confidence 3467788888888654 458999998653211 2234555666666652 368999986643 233445568
Q ss_pred HHcCCC
Q 014588 397 KESGMT 402 (422)
Q Consensus 397 ~~~Gip 402 (422)
+++|+-
T Consensus 179 ~~~G~d 184 (300)
T TIGR01037 179 EEAGAD 184 (300)
T ss_pred HHcCCC
Confidence 888764
No 310
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.94 E-value=2.5e+02 Score=25.98 Aligned_cols=60 Identities=23% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHHHHHHHHHhcC
Q 014588 309 DIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA 375 (422)
Q Consensus 309 D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~ 375 (422)
+++...|++..+..-..++.+.+.....++.++ +.|.++++++ ..+..|.++++++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~~~~~~l~~~g 201 (270)
T cd06296 141 AALAEAGIPVDPALVREGDFSTESGFRAAAELLALPERPTAIFA-------GNDLMALGVYEAARERG 201 (270)
T ss_pred HHHHHcCCCCChHHheeCCCCHHHHHHHHHHHHhCCCCCcEEEE-------cCcHHHHHHHHHHHHhC
Confidence 455666665433333345555554334444444 4578898884 23567888888888754
No 311
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=22.94 E-value=4e+02 Score=23.14 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
.+.+.+...++.+..++.+ -+.+|.+||.. .-+..|.+..+. .+||+++...|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~---~~~~~i~~~i~~--~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDV---FAGLAIYNALKR--HKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCH---HHHHHHHHHHHh--cCCCEEEEEcch
Confidence 4566778888877666222 23347777743 224566666666 478998876664
No 312
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.87 E-value=3.6e+02 Score=25.39 Aligned_cols=79 Identities=28% Similarity=0.312 Sum_probs=45.8
Q ss_pred eEEEEEcCccHH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHHH
Q 014588 293 EIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 293 ~vaiitngGG~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
+|++++...... --..+++..+|++.. .+...+..+.+.-.+.++.+++ .|..++|++ ..+.+|.
T Consensus 120 ~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~A~ 191 (269)
T cd06287 120 QIALIVGSARRNSYLEAEAAYRAFAAEHGMPPV-VLRVDEAGGEEAGYAACAQLLAQHPDLDALCV-------PVDAFAV 191 (269)
T ss_pred cEEEEeCCcccccHHHHHHHHHHHHHHcCCCcc-eeEecCCCChHHHHHHHHHHHhCCCCCCEEEE-------cCcHHHH
Confidence 788885332211 112366777777643 3333444444443445555554 467898884 2477889
Q ss_pred HHHHHHHhcCCCCc
Q 014588 366 GIVNAAKQVALKVP 379 (422)
Q Consensus 366 ~i~~~~~~~~~~kp 379 (422)
++++++++.+...|
T Consensus 192 gvl~al~~~gl~vP 205 (269)
T cd06287 192 GAVRAATELGRAVP 205 (269)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999888654434
No 313
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=22.86 E-value=5.3e+02 Score=24.21 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHh-cCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccc
Q 014588 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQ-VALKVPVVVRLEGTNVDQGKRILKESGMTLITA 406 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~-~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf 406 (422)
...+--.++++.+.++ +++++.+--... .....-...+++.... ...+||..+ + |...+...-.+...|+- .|
T Consensus 65 ~~~~lR~~s~~~l~~~-~~~g~~igGl~~-~~~~~~~~~~l~~i~~~lp~~~pr~l-~-G~~~P~~i~~~v~~GvD--~f 138 (238)
T PF01702_consen 65 DDKDLRRRSAEELSED-GFDGYAIGGLSP-GEEKEERLEILEAIINNLPPDKPRYL-L-GVGTPEEILEAVYLGVD--LF 138 (238)
T ss_dssp T-HHHHHHHHHHHHHS-S-SEEEE-SSSS-SSHHHHHHHHHHHHHHCS-TTS-EEE-T-TB-SHHHHHHHHHTT----EE
T ss_pred CCHHHHHHHHHHHHhc-ccccccccCCcC-CCCHHHHHHHHHHHHhhCCcccceec-c-CCCCHHHHHHHHHcCCc--EE
Confidence 3444456777777775 899988622111 1222333444444333 445799877 3 32234555566788999 88
Q ss_pred cCH
Q 014588 407 EDL 409 (422)
Q Consensus 407 ~~~ 409 (422)
++.
T Consensus 139 Ds~ 141 (238)
T PF01702_consen 139 DSS 141 (238)
T ss_dssp EES
T ss_pred cch
Confidence 764
No 314
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=22.79 E-value=4.7e+02 Score=27.66 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=57.7
Q ss_pred CeEEEEEcCccHHHH--------HHHHHHHCCC-CCCCeeec-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC-Ch
Q 014588 292 GEIGCMVNGAGLAMA--------TMDIIKLHGG-TPANFLDV-GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM-KC 360 (422)
Q Consensus 292 g~vaiitngGG~gv~--------~~D~l~~~G~-~~~NPlDl-~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~-~~ 360 (422)
..+++=|.+||+.|. ++-++...-+ .-++=+++ +++-+.....+..++ +.|.||+ .||+. -.
T Consensus 62 ~~~acSSAaGGLkmvv~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~~-----~PDIILL--aGGtDGG~ 134 (463)
T TIGR01319 62 AKKACSSAAGGLAMAAIGLVPEITAEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEES-----NLDIILF--AGGTDGGE 134 (463)
T ss_pred eEEEEcccCCChheEEEeccchhhHHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhhc-----CCCEEEE--eCCcCCCc
Confidence 456777777777764 3444444443 34677884 455555555554442 4567774 44433 11
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCC--CHHHHHHHHHHcCCCc
Q 014588 361 DVIASGIVNAAKQVALKVPVVVRLEGT--NVDQGKRILKESGMTL 403 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~~~kpivv~~~g~--~~~~~~~~L~~~Gip~ 403 (422)
.+..-..++.+.+.+.+.||++ .|+ ..++..++|.+.++++
T Consensus 135 ~e~~l~NA~~La~~~~~~pIIy--AGN~~a~~~V~~il~~~~~~~ 177 (463)
T TIGR01319 135 EECGIHNAKMLAEHGLDCAIIV--AGNKDIQDEVQEIFDHADIFY 177 (463)
T ss_pred hHHHHHHHHHHHhcCCCCcEEE--eCCHHHHHHHHHHHhcCCceE
Confidence 2222333344445456788764 344 3455677898888773
No 315
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=22.59 E-value=5e+02 Score=26.95 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=61.4
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCC------CCCCe--eeccC----CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCCh
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGG------TPANF--LDVGG----NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~------~~~NP--lDl~g----~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~ 360 (422)
+|.||.+||. -...+..+...+. .|+|+ ..... ..+..+....++.+ ++.++|.+++ + ..
T Consensus 6 kvLviG~g~r-ehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a-~~~~iD~Vv~---g---~E 77 (426)
T PRK13789 6 KVLLIGSGGR-ESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFL-KSNPFDLIVV---G---PE 77 (426)
T ss_pred EEEEECCCHH-HHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHH-HHcCCCEEEE---C---Cc
Confidence 6777766664 4455556666663 35666 22210 12223344555544 4568999885 1 12
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEE------eCCCCHHHHHHHHHHcCCCc---ccccCHHHHHHHH
Q 014588 361 DVIASGIVNAAKQVALKVPVVVR------LEGTNVDQGKRILKESGMTL---ITAEDLDDAAEKA 416 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~~~kpivv~------~~g~~~~~~~~~L~~~Gip~---~vf~~~e~Av~al 416 (422)
+....++.+.+++ .+.|++.- +.+ +-..+++.|+++|||. .+|.+.+++.+.+
T Consensus 78 ~~l~~glad~~~~--~Gip~~Gp~~~aa~le~-dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~ 139 (426)
T PRK13789 78 DPLVAGFADWAAE--LGIPCFGPDSYCAQVEG-SKHFAKSLMKEAKIPTASYKTFTEYSSSLSYL 139 (426)
T ss_pred hHHHHHHHHHHHH--cCCCcCCCHHHHHHHHc-CHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHH
Confidence 4455677777666 35565310 111 1233556788899984 4456777776544
No 316
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=22.37 E-value=5.8e+02 Score=22.97 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=42.1
Q ss_pred CeEEEEEcCcc--HHHH----HHHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAG--LAMA----TMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG--~gv~----~~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+ .+.. ..+.+...|.......-..+..+.+. +..+.+.+.++|++|+++.. .+..+
T Consensus 117 ~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~-------~~~~a 189 (264)
T cd06267 117 RRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAA-------NDLMA 189 (264)
T ss_pred ceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEc-------CcHHH
Confidence 48999976654 2211 12556666653222111233333344 55555666688889998851 23455
Q ss_pred HHHHHHHHhcC
Q 014588 365 SGIVNAAKQVA 375 (422)
Q Consensus 365 ~~i~~~~~~~~ 375 (422)
.++++++++.+
T Consensus 190 ~~~~~al~~~g 200 (264)
T cd06267 190 IGALRALRELG 200 (264)
T ss_pred HHHHHHHHHhC
Confidence 66777766643
No 317
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.28 E-value=6.6e+02 Score=23.64 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=40.2
Q ss_pred CeEEEEEcCccHHH--H----HHHHHHHCCCCCC-Ceee--ccCCCCHHHHHHHH-HHHHcCC-CccEEEEEccCCCCCh
Q 014588 292 GEIGCMVNGAGLAM--A----TMDIIKLHGGTPA-NFLD--VGGNASEGQVVEAF-KILTSDE-KVKAILVNIFGGIMKC 360 (422)
Q Consensus 292 g~vaiitngGG~gv--~----~~D~l~~~G~~~~-NPlD--l~g~~~~~~~~~al-~~ll~d~-~vd~ilv~i~~~~~~~ 360 (422)
+++++++....... . ..+++...|..+. ..++ ..++.+.+.-.+++ +.+.++| +.++|++ ..
T Consensus 126 ~~i~~l~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~I~~-------~~ 198 (288)
T cd01538 126 GNIELIAGSPTDNNAKLFFNGAMSVLKPLIDSGKITIVGEVATPDWDPETAQKRMENALTANYNKVDGVLA-------AN 198 (288)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhccccCCeeEEeccccCCCCHHHHHHHHHHHHHhCCCCccEEEe-------CC
Confidence 37887754333211 1 1366666652110 1111 12333333333444 4444567 7888884 23
Q ss_pred HHHHHHHHHHHHhcC
Q 014588 361 DVIASGIVNAAKQVA 375 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~ 375 (422)
+.+|.++++++++.+
T Consensus 199 d~~a~g~~~al~~~g 213 (288)
T cd01538 199 DGTAGGAIAALKAAG 213 (288)
T ss_pred cHHHHHHHHHHHHcC
Confidence 678889999988854
No 318
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.26 E-value=6.1e+02 Score=25.66 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=43.9
Q ss_pred CeEEEEEcCcc-----HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEE
Q 014588 292 GEIGCMVNGAG-----LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV 351 (422)
Q Consensus 292 g~vaiitngGG-----~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv 351 (422)
.|+.|+|..+. ..--..+.++..|....-+-++.++++.+.+.++.+.+.+ -++|.|+-
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~Iia 89 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE-EGCDFVVG 89 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH-cCCCEEEE
Confidence 58999986553 2234566777888877666688889999989999888765 57898884
No 319
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.08 E-value=4e+02 Score=21.43 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCcEEEEeCCC--CHHHHHHHHHHcCCCc
Q 014588 366 GIVNAAKQVALKVPVVVRLEGT--NVDQGKRILKESGMTL 403 (422)
Q Consensus 366 ~i~~~~~~~~~~kpivv~~~g~--~~~~~~~~L~~~Gip~ 403 (422)
..++.+++ .++|+++..-.+ ...+-.+.|++.|+++
T Consensus 21 e~l~~L~~--~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 21 EALDALRE--RGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHH--TTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 34444555 478988774332 3466677899999984
No 320
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=21.98 E-value=2.9e+02 Score=25.69 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcC
Q 014588 309 DIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA 375 (422)
Q Consensus 309 D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~ 375 (422)
+++..+|.......-+..+.+.+. +...-+.+.+.|+++++++. .+.++.++++++++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~~~~a~g~~~~l~~~g 209 (275)
T cd06295 149 EALAEAGLPLDPRLVAPGDFTEESGRAAMRALLERGPDFDAVFAA-------SDLMALGALRALREAG 209 (275)
T ss_pred HHHHHcCCCCChhhEEeccCCHHHHHHHHHHHHhCCCCCCEEEEC-------CcHHHHHHHHHHHHhC
Confidence 556666644322212223333333 44444555567889998851 3567778888887754
No 321
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.95 E-value=2e+02 Score=28.48 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=45.0
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..++++|-.|--.+... .-+|+..|+. .--+++..+.+.+.+.+.++.+-+|++|++|++..+
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~P 99 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARVGIA-SFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLP 99 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 34677776664433322 2467777765 233567788888889999999999999999999655
No 322
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=21.88 E-value=6.2e+02 Score=23.13 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=42.4
Q ss_pred CeEEEEEcCccHH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q 014588 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 292 g~vaiitngGG~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
++|++++...+.- --..+++..+|.....-.-..+..+.+.-.+.++-+++.. +++|++ ..+..+.
T Consensus 117 ~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~av~~-------~~d~~a~ 188 (265)
T cd06299 117 KKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATKLLDQG-ATAIIA-------GDSMMTI 188 (265)
T ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHHHHHHHHHHHcCC-CCEEEE-------cCcHHHH
Confidence 4899987554421 1234666666653222122234444444445555555543 778774 2356788
Q ss_pred HHHHHHHhcC
Q 014588 366 GIVNAAKQVA 375 (422)
Q Consensus 366 ~i~~~~~~~~ 375 (422)
++.+++++.+
T Consensus 189 gv~~al~~~g 198 (265)
T cd06299 189 GAIRAIHDAG 198 (265)
T ss_pred HHHHHHHHhC
Confidence 8888888754
No 323
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.82 E-value=7.1e+02 Score=24.05 Aligned_cols=72 Identities=26% Similarity=0.295 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCC--------ChHHHHHHHHHHHHhcCCCCcEEEEeCCC--CHHHHHHHHHH
Q 014588 329 SEGQVVEAFKILTSDEKVKAILVNIFGGIM--------KCDVIASGIVNAAKQVALKVPVVVRLEGT--NVDQGKRILKE 398 (422)
Q Consensus 329 ~~~~~~~al~~ll~d~~vd~ilv~i~~~~~--------~~~~~a~~i~~~~~~~~~~kpivv~~~g~--~~~~~~~~L~~ 398 (422)
+.+.|.++.+.+.+ -.+|+|=+|+..+.. ........+++..++. .++||.+.+..+ ...+..+.+.+
T Consensus 100 ~~~~~~~~a~~~~~-~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~~~~~~~~~~a~~~~~ 177 (296)
T cd04740 100 TVEEFVEVAEKLAD-AGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLTPNVTDIVEIARAAEE 177 (296)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHHHHHHH
Confidence 46778888887755 478999887653221 2234556677776663 378999886544 23344556777
Q ss_pred cCCC
Q 014588 399 SGMT 402 (422)
Q Consensus 399 ~Gip 402 (422)
.|+-
T Consensus 178 ~G~d 181 (296)
T cd04740 178 AGAD 181 (296)
T ss_pred cCCC
Confidence 7764
No 324
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=21.51 E-value=3.3e+02 Score=26.57 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=46.7
Q ss_pred CeEEEEEcCccHH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...... --..+++..+|+....-.-..+..+.+.-.+.++.++ +.+..++|++ ..|.+|
T Consensus 177 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~nd~~A 249 (346)
T PRK10401 177 QRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTGTPDMQGGEAAMVELLGRNLQLTAVFA-------YNDNMA 249 (346)
T ss_pred CeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecCCCChHHHHHHHHHHHcCCCCCcEEEE-------CCcHHH
Confidence 3788886432211 1134778888875432122234445444334454555 4567888884 247788
Q ss_pred HHHHHHHHhcCCCCc
Q 014588 365 SGIVNAAKQVALKVP 379 (422)
Q Consensus 365 ~~i~~~~~~~~~~kp 379 (422)
.++.+++++.+...|
T Consensus 250 ~g~~~al~~~G~~vP 264 (346)
T PRK10401 250 AGALTALKDNGIAIP 264 (346)
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999988654333
No 325
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=21.36 E-value=8.5e+02 Score=27.32 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=63.5
Q ss_pred CeEEEEEcCccH----HHHHHHHHHHCCCCCCCeeeccC-CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 292 GEIGCMVNGAGL----AMATMDIIKLHGGTPANFLDVGG-NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 292 g~vaiitngGG~----gv~~~D~l~~~G~~~~NPlDl~g-~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
++|.+.|-|+=. .-.+++.+...|..+ |+++ ..+++.+.++ ..+ .+.|.+.++... ....+.+..
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV----~~~~~~~s~e~~v~a---a~~-~~a~ivvlcs~d--~~~~e~~~~ 652 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDV----DIGPLFQTPEEAARQ---AVE-NDVHVVGVSSLA--AGHKTLVPA 652 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeE----ecCCCCCCHHHHHHH---HHH-cCCCEEEEeccc--hhhHHHHHH
Confidence 367766666521 245567888888876 5553 4566644333 333 466766654332 234456788
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCccccc--CHHHHHHHHH
Q 014588 367 IVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAE--DLDDAAEKAV 417 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~--~~e~Av~al~ 417 (422)
+++.+++.+. ..+.+..+|.-.++..+.+++.|+--+.|. +..+.+..+.
T Consensus 653 l~~~Lk~~G~-~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~ 704 (714)
T PRK09426 653 LIEALKKLGR-EDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLL 704 (714)
T ss_pred HHHHHHhcCC-CCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHH
Confidence 8888887432 124445566422333467899998622222 4444444443
No 326
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=21.36 E-value=6.5e+02 Score=23.22 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcC
Q 014588 333 VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA 375 (422)
Q Consensus 333 ~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~ 375 (422)
+..+.+.+.+.|++++++. ..+.+|.++++++++.+
T Consensus 170 ~~~~~~~l~~~~~~~ai~~-------~~d~~a~~~~~al~~~g 205 (275)
T cd06320 170 YDVATTILQRNPDLKAIYC-------NNDTMALGVVEAVKNAG 205 (275)
T ss_pred HHHHHHHHHhCCCccEEEE-------CCchhHHHHHHHHHhcC
Confidence 3344444445678888773 24677888888888754
No 327
>PRK11579 putative oxidoreductase; Provisional
Probab=21.16 E-value=2.9e+02 Score=27.47 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=33.5
Q ss_pred HHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCCc
Q 014588 335 EAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMTL 403 (422)
Q Consensus 335 ~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip~ 403 (422)
.-++-+++++++|+|+|..+. ..-.+-+..+++ .+|+|++= ....+.+++.+ .-+++|+++
T Consensus 54 ~~~~ell~~~~vD~V~I~tp~-----~~H~~~~~~al~---aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 54 SEPQHLFNDPNIDLIVIPTPN-----DTHFPLAKAALE---AGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred CCHHHHhcCCCCCEEEEcCCc-----HHHHHHHHHHHH---CCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 456778889999999975442 222333344443 25666652 22323444433 345567663
No 328
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.07 E-value=5.8e+02 Score=24.65 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=39.6
Q ss_pred HHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC--CCHHHHHHHHHHcCCCcccccC
Q 014588 336 AFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG--TNVDQGKRILKESGMTLITAED 408 (422)
Q Consensus 336 al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g--~~~~~~~~~L~~~Gip~~vf~~ 408 (422)
+++-..+-++++.-++ -.|.-...+++.+..-...++.+++.-|+++..+ +.+..+++.|.+.|+|..+..|
T Consensus 22 ~lDErAdRedI~vrv~-gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D 95 (277)
T PRK00994 22 LLDERADREDIDVRVV-GSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGD 95 (277)
T ss_pred HHHhhhcccCceEEEe-ccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcC
Confidence 3343334457766554 2233334555555555555554344444444221 2567789999999999655543
No 329
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=20.95 E-value=7.7e+02 Score=23.90 Aligned_cols=73 Identities=30% Similarity=0.392 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccC------C--CCChHHHHHHHHHHHHhcCCCCcEEEEeCCC--CHHHHHHHHHH
Q 014588 329 SEGQVVEAFKILTSDEKVKAILVNIFG------G--IMKCDVIASGIVNAAKQVALKVPVVVRLEGT--NVDQGKRILKE 398 (422)
Q Consensus 329 ~~~~~~~al~~ll~d~~vd~ilv~i~~------~--~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~--~~~~~~~~L~~ 398 (422)
+.+.|.++.+.+.+...+|+|=+|+.- + .....+....+++..++. .++||.+.+..+ ...+..+.+++
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-VKVPVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEEcCCCchhHHHHHHHHHH
Confidence 467788888887553338998887521 1 112244556666666653 378999886643 23344567888
Q ss_pred cCCC
Q 014588 399 SGMT 402 (422)
Q Consensus 399 ~Gip 402 (422)
.|+-
T Consensus 181 ~G~d 184 (301)
T PRK07259 181 AGAD 184 (301)
T ss_pred cCCC
Confidence 8864
No 330
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=20.94 E-value=1.5e+02 Score=29.93 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHHHHHHH-cCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC---CHHHHHHH
Q 014588 32 EYQGAELMAK-YGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV---KKEEVEDL 107 (422)
Q Consensus 32 e~~ak~lL~~-~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~---~~ee~~~a 107 (422)
....+.+|.+ --+|..+++.+.++++.....+.+ . .+|+|+...++ |+ |+.++ |+ |.++.
T Consensus 253 p~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l--~--~lvvKp~~g~g--g~---------~~~~G~~~s~-e~~~~ 316 (330)
T PF04174_consen 253 PRMIRYYLGEELLLPNVPTWWCGDPEDREYVLANL--D--ELVVKPADGYG--GK---------GVYIGPKLSA-ERRAL 316 (330)
T ss_dssp HHHHHHHH-S--SSEE---EETTSHHHHHHHHHSG--G--GEEEEE-------------------EEEGGG--H-HHHHH
T ss_pred HHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhch--h--hcEEEecCCCC--CC---------cceeCCcCCH-HHHHH
Confidence 3344555433 344567778888999999999998 4 79999965443 33 46677 66 88888
Q ss_pred HHHHhcc
Q 014588 108 AGKMLGQ 114 (422)
Q Consensus 108 ~~~l~~~ 114 (422)
+++|..+
T Consensus 317 ~~~I~~~ 323 (330)
T PF04174_consen 317 RAEILAR 323 (330)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 8888754
No 331
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=20.86 E-value=8.5e+02 Score=25.80 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=60.4
Q ss_pred EEEEEcCccHHHHHHHHHHHC--CCC----CC--Ceeecc-C-C-------CCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 294 IGCMVNGAGLAMATMDIIKLH--GGT----PA--NFLDVG-G-N-------ASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 294 vaiitngGG~gv~~~D~l~~~--G~~----~~--NPlDl~-g-~-------~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
|.| ..|||-....+.++... |.+ +. ||--.. + . .+..+....++++. +.++|.+++ ++
T Consensus 3 VLv-iG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~-~~~id~Vi~---g~ 77 (486)
T PRK05784 3 VLL-VGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEEVKKVAK-EVNPDLVVI---GP 77 (486)
T ss_pred EEE-ECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEecCCCCHHHHHHHHH-HhCCCEEEE---CC
Confidence 444 45555667777777776 543 33 662110 1 0 01112345555554 467998885 21
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEE------eCCCCHHHHHHHHHHcCCCc----ccccCHHHHHHHH
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVR------LEGTNVDQGKRILKESGMTL----ITAEDLDDAAEKA 416 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~------~~g~~~~~~~~~L~~~Gip~----~vf~~~e~Av~al 416 (422)
.+....++++.+++ .+.|++.- +.+ +-..+++.|+++|||. .+|.++++|.+.+
T Consensus 78 ---E~~l~~glad~l~~--~Gi~v~Gps~~aa~le~-dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~ 141 (486)
T PRK05784 78 ---EEPLFAGVADVLRE--EGFPVFGASSKCARIEK-SKVWARELMWKYSIPGRLRYKVFYDVEEAAKFI 141 (486)
T ss_pred ---chHHHHHHHHHHHh--CCCCEECCcHHHHHHhc-CHHHHHHHHHHcCcCCCccceEeCCHHHHHHHH
Confidence 23455677777766 46665421 111 1223455789999993 3356788776654
No 332
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=20.62 E-value=7.6e+02 Score=25.40 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC-----------ChHHHHHHHHHHHHhcCCCCcEEEEeCCC--CHHHH
Q 014588 326 GNASEGQVVEAFKILTSDEKVKAILVNIFGGIM-----------KCDVIASGIVNAAKQVALKVPVVVRLEGT--NVDQG 392 (422)
Q Consensus 326 g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~-----------~~~~~a~~i~~~~~~~~~~kpivv~~~g~--~~~~~ 392 (422)
+..+.+.|.+.++.+.+ .++|++=+|+.-+.. ...+....|++..++. ..+|+++.+..+ .....
T Consensus 122 ~~~s~~~~~~~a~~~e~-~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLsPn~t~i~~i 199 (385)
T PLN02495 122 EEYNKDAWEEIIERVEE-TGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMTPNITDITQP 199 (385)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeCCChhhHHHH
Confidence 33566778888887754 568888888742111 2234555566665543 468998887654 22333
Q ss_pred HHHHHHcC
Q 014588 393 KRILKESG 400 (422)
Q Consensus 393 ~~~L~~~G 400 (422)
.+.+.+.|
T Consensus 200 a~aa~~~G 207 (385)
T PLN02495 200 ARVALKSG 207 (385)
T ss_pred HHHHHHhC
Confidence 44455554
No 333
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=20.58 E-value=4.8e+02 Score=25.29 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=34.2
Q ss_pred cEEEEEccCCCC-C-hHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHc-CCCcccccCHHHHHHHHHH
Q 014588 347 KAILVNIFGGIM-K-CDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKES-GMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 347 d~ilv~i~~~~~-~-~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~-Gip~~vf~~~e~Av~al~~ 418 (422)
++||+..||... . .....+.|.+..++.-++.+|...+.. .-.+++|++. |+. +++|.+|...|..
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS---~~I~~kl~~~~g~~---i~~~~eaL~~L~~ 69 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS---RIIRKKLAERDGIK---IDSPEEALAKLAD 69 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES----HHHHHHHHHCHT--------HHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH---HHHHHHHHhcCCCC---cCCHHHHHHHHHH
Confidence 467776666533 2 232456666666664356666544432 3456778887 654 6789888887653
No 334
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=20.53 E-value=74 Score=24.99 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=21.6
Q ss_pred cccCCCHHHHHHHHHHcCCCC--CCeeeeCCH
Q 014588 26 RRLNIHEYQGAELMAKYGINV--PKGLAVASV 55 (422)
Q Consensus 26 ~~~~L~e~~ak~lL~~~GIpv--p~~~~~~s~ 55 (422)
.+..|++.|++++|+.|||.- .++...+++
T Consensus 17 eH~vls~eE~~~vLk~l~i~~~qLPkI~~~DP 48 (80)
T COG2012 17 EHEVLSEEEAKEVLKELGIEPEQLPKIKASDP 48 (80)
T ss_pred ceEEcCHHHHHHHHHHhCCCHHHCCcccccCh
Confidence 346799999999999999973 344444443
No 335
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=20.22 E-value=3.8e+02 Score=26.13 Aligned_cols=15 Identities=7% Similarity=0.136 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHhcc
Q 014588 100 KKEEVEDLAGKMLGQ 114 (422)
Q Consensus 100 ~~ee~~~a~~~l~~~ 114 (422)
++++...+++++...
T Consensus 136 t~~e~~~aaeyi~~~ 150 (264)
T PRK05198 136 APWDMKNVVDKVREA 150 (264)
T ss_pred CHHHHHHHHHHHHHc
Confidence 889999999988753
No 336
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=20.20 E-value=3.7e+02 Score=24.62 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=35.6
Q ss_pred HHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCC
Q 014588 308 MDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 377 (422)
Q Consensus 308 ~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~ 377 (422)
.+.+...|+.....+. ...+.+ .+..+.+.+.+.|.+|+++. ..+..+.++++++++.+..
T Consensus 140 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~al~~~g~~ 201 (266)
T cd06282 140 RAAMRAAGLAPLPPVE--IPFNTAALPSALLALLTAHPAPTAIFC-------SNDLLALAVIRALRRLGLR 201 (266)
T ss_pred HHHHHHcCCCCCcccc--CCCcHHHHHHHHHHHhcCCCCCCEEEE-------CCcHHHHHHHHHHHHcCCC
Confidence 3667777765433322 222233 34455555555678898885 1356777888888876543
No 337
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.17 E-value=4.8e+02 Score=23.87 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=33.4
Q ss_pred HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHHHHHHHHHhcC
Q 014588 309 DIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA 375 (422)
Q Consensus 309 D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~ 375 (422)
+.+...|..+....-..+..+.+...++++.++ ..|++++|++ ..+.++.++++++++.+
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~~~~~~l~~~g 200 (268)
T cd01575 140 AALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFC-------SNDDLALGALFECQRRG 200 (268)
T ss_pred HHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEE-------CCcHHHHHHHHHHHHhC
Confidence 345555553222122223344444444555554 5688999885 23567778888887754
No 338
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.17 E-value=3.1e+02 Score=27.87 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHH
Q 014588 334 VEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKE 398 (422)
Q Consensus 334 ~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~ 398 (422)
+...+-|++||+||+|.|.++ .+...+++--+++ .+|+|++= .-..+..+..+++++
T Consensus 61 y~syEeLakd~~vDvVyi~~~--~~qH~evv~l~l~------~~K~VL~EKPla~n~~e~~~ivea 118 (351)
T KOG2741|consen 61 YGSYEELAKDPEVDVVYISTP--NPQHYEVVMLALN------KGKHVLCEKPLAMNVAEAEEIVEA 118 (351)
T ss_pred ccCHHHHhcCCCcCEEEeCCC--CccHHHHHHHHHH------cCCcEEecccccCCHHHHHHHHHH
Confidence 345778899999999776333 2233333333222 36776652 222245555555444
No 339
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.08 E-value=3.3e+02 Score=24.85 Aligned_cols=25 Identities=16% Similarity=0.144 Sum_probs=22.8
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCC
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGT 317 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~ 317 (422)
+|.||=+++|-....+++++..|..
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~G~~ 26 (200)
T PRK13143 2 MIVIIDYGVGNLRSVSKALERAGAE 26 (200)
T ss_pred eEEEEECCCccHHHHHHHHHHCCCe
Confidence 5889999999999999999999965
No 340
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.06 E-value=3.7e+02 Score=22.09 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHcCCCccEEEEEcc-CCCCC-------hHHHHHHHHHHHHhcCCCCcEEEEeCCCCH--HHHHHHHHHcCCCcccc
Q 014588 337 FKILTSDEKVKAILVNIF-GGIMK-------CDVIASGIVNAAKQVALKVPVVVRLEGTNV--DQGKRILKESGMTLITA 406 (422)
Q Consensus 337 l~~ll~d~~vd~ilv~i~-~~~~~-------~~~~a~~i~~~~~~~~~~kpivv~~~g~~~--~~~~~~L~~~Gip~~vf 406 (422)
...+.+++.++-+++.-. +++.. ...-.+.+++++++. . .=++..|...+ .--.+.|++.||| +|
T Consensus 16 a~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~--~-idlvvvGPE~pL~~Gl~D~l~~~gi~--vf 90 (100)
T PF02844_consen 16 AWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFAKEN--K-IDLVVVGPEAPLVAGLADALRAAGIP--VF 90 (100)
T ss_dssp HHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHT--T-ESEEEESSHHHHHTTHHHHHHHTT-C--EE
T ss_pred HHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHc--C-CCEEEECChHHHHHHHHHHHHHCCCc--EE
Confidence 445667888888887322 11110 122346788888762 2 21223333211 1135689999999 99
Q ss_pred cCHHHHHH
Q 014588 407 EDLDDAAE 414 (422)
Q Consensus 407 ~~~e~Av~ 414 (422)
.-..+|++
T Consensus 91 GP~k~aA~ 98 (100)
T PF02844_consen 91 GPSKEAAR 98 (100)
T ss_dssp S--HHHHH
T ss_pred CcCHHHHh
Confidence 87776654
Done!