Query 014588
Match_columns 422
No_of_seqs 253 out of 2003
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:16:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fp4_B Succinyl-COA ligase [GD 100.0 4.6E-82 1.6E-86 640.9 42.6 392 28-422 1-394 (395)
2 2nu8_B SCS-beta, succinyl-COA 100.0 3.1E-79 1.1E-83 619.6 42.6 385 28-422 1-387 (388)
3 3ufx_B Succinyl-COA synthetase 100.0 3.5E-80 1.2E-84 628.0 33.7 374 28-421 1-375 (397)
4 3mwd_A ATP-citrate synthase; A 100.0 1.9E-69 6.5E-74 550.6 24.4 371 28-420 4-418 (425)
5 3pff_A ATP-citrate synthase; p 100.0 2.1E-65 7.2E-70 554.0 23.6 370 28-419 4-417 (829)
6 1wr2_A Hypothetical protein PH 100.0 8.3E-35 2.8E-39 276.1 20.1 209 24-257 14-238 (238)
7 2csu_A 457AA long hypothetical 99.9 3.8E-23 1.3E-27 213.5 16.9 258 143-421 139-446 (457)
8 3dmy_A Protein FDRA; predicted 99.7 5.4E-18 1.9E-22 174.7 13.2 166 234-421 199-413 (480)
9 3aw8_A PURK, phosphoribosylami 99.2 5.2E-11 1.8E-15 118.8 13.5 105 27-161 92-197 (369)
10 3lp8_A Phosphoribosylamine-gly 99.2 3.4E-10 1.2E-14 116.2 17.6 103 28-152 120-223 (442)
11 3k5i_A Phosphoribosyl-aminoimi 99.2 1.7E-10 5.7E-15 117.1 13.6 98 27-152 119-219 (403)
12 4eg0_A D-alanine--D-alanine li 99.2 4.4E-10 1.5E-14 109.9 15.3 105 28-161 104-213 (317)
13 3e5n_A D-alanine-D-alanine lig 99.1 6.4E-10 2.2E-14 112.2 16.4 103 29-161 157-264 (386)
14 3ouz_A Biotin carboxylase; str 99.1 4.4E-10 1.5E-14 115.2 14.7 110 29-161 117-229 (446)
15 2cqy_A Propionyl-COA carboxyla 99.1 9.9E-12 3.4E-16 101.8 1.8 98 29-147 6-106 (108)
16 4e4t_A Phosphoribosylaminoimid 99.1 4.1E-10 1.4E-14 114.8 13.2 104 27-161 129-237 (419)
17 1a9x_A Carbamoyl phosphate syn 99.1 4.1E-10 1.4E-14 127.3 13.8 106 29-161 126-232 (1073)
18 3jrx_A Acetyl-COA carboxylase 99.1 1.3E-09 4.6E-14 115.2 16.3 106 29-161 178-313 (587)
19 3q2o_A Phosphoribosylaminoimid 99.0 8.1E-09 2.8E-13 103.8 19.3 105 27-161 108-213 (389)
20 3mjf_A Phosphoribosylamine--gl 99.0 7.5E-10 2.6E-14 113.2 11.6 109 28-161 104-213 (431)
21 3i12_A D-alanine-D-alanine lig 99.0 2.6E-09 9E-14 106.7 14.8 97 28-152 137-238 (364)
22 3glk_A Acetyl-COA carboxylase 99.0 7.7E-09 2.7E-13 108.6 17.7 107 28-161 161-297 (540)
23 1w96_A ACC, acetyl-coenzyme A 99.0 9.5E-09 3.3E-13 108.3 17.6 107 27-160 169-302 (554)
24 3eth_A Phosphoribosylaminoimid 99.0 1.4E-09 4.6E-14 108.6 10.4 100 28-161 76-178 (355)
25 3orq_A N5-carboxyaminoimidazol 98.9 1.5E-08 5.1E-13 101.6 15.7 103 28-161 107-211 (377)
26 3vmm_A Alanine-anticapsin liga 98.9 3.9E-09 1.3E-13 109.2 11.6 113 25-153 133-259 (474)
27 1vkz_A Phosphoribosylamine--gl 98.9 7.9E-09 2.7E-13 104.8 13.0 104 27-152 102-206 (412)
28 4fu0_A D-alanine--D-alanine li 98.9 7E-09 2.4E-13 103.3 12.3 95 30-152 138-236 (357)
29 3k3p_A D-alanine--D-alanine li 98.9 3.1E-08 1E-12 99.8 16.5 95 29-151 159-259 (383)
30 2xcl_A Phosphoribosylamine--gl 98.9 1E-08 3.6E-13 103.9 13.2 102 28-151 99-201 (422)
31 3n6r_A Propionyl-COA carboxyla 98.9 1.6E-09 5.5E-14 116.8 6.8 111 28-161 112-225 (681)
32 2yrx_A Phosphoribosylglycinami 98.9 1.3E-08 4.5E-13 104.4 13.1 103 28-152 120-223 (451)
33 2yw2_A Phosphoribosylamine--gl 98.9 1.5E-08 5.3E-13 102.7 13.5 101 29-151 100-201 (424)
34 1ulz_A Pyruvate carboxylase N- 98.8 1.8E-08 6.2E-13 103.1 13.0 110 29-161 112-224 (451)
35 3tqt_A D-alanine--D-alanine li 98.8 4.8E-08 1.6E-12 98.0 15.8 95 29-151 138-238 (372)
36 2z04_A Phosphoribosylaminoimid 98.8 4E-09 1.4E-13 104.8 7.6 103 28-161 89-193 (365)
37 1a9x_A Carbamoyl phosphate syn 98.8 2.7E-08 9.2E-13 112.5 14.8 98 30-152 673-771 (1073)
38 2vpq_A Acetyl-COA carboxylase; 98.8 2.5E-08 8.7E-13 102.0 13.0 110 29-161 112-224 (451)
39 2qf7_A Pyruvate carboxylase pr 98.8 3.8E-09 1.3E-13 119.9 7.3 110 28-160 131-243 (1165)
40 3ln6_A Glutathione biosynthesi 98.8 4.8E-09 1.6E-13 114.0 7.8 112 31-172 484-605 (750)
41 2qk4_A Trifunctional purine bi 98.8 2.6E-08 8.8E-13 102.1 12.8 102 28-151 125-228 (452)
42 2ip4_A PURD, phosphoribosylami 98.8 2.4E-08 8.2E-13 101.1 12.4 98 28-151 98-196 (417)
43 2dzd_A Pyruvate carboxylase; b 98.8 3.1E-08 1.1E-12 101.7 12.5 110 27-159 116-228 (461)
44 2w70_A Biotin carboxylase; lig 98.8 2.4E-08 8.1E-13 102.2 11.6 110 29-161 113-226 (449)
45 1kjq_A GART 2, phosphoribosylg 98.8 1.9E-08 6.5E-13 100.7 10.4 102 28-152 109-212 (391)
46 3se7_A VANA; alpha-beta struct 98.8 4.5E-08 1.6E-12 96.9 12.4 94 28-151 129-223 (346)
47 1ehi_A LMDDL2, D-alanine:D-lac 98.8 3.6E-08 1.2E-12 98.9 11.6 95 30-151 134-233 (377)
48 3r5x_A D-alanine--D-alanine li 98.7 1.5E-08 5.1E-13 98.1 8.2 97 28-152 94-192 (307)
49 3va7_A KLLA0E08119P; carboxyla 98.7 6.1E-09 2.1E-13 118.5 6.2 109 30-161 143-253 (1236)
50 3u9t_A MCC alpha, methylcroton 98.7 1.2E-08 4.2E-13 109.8 7.8 110 29-161 139-251 (675)
51 4dim_A Phosphoribosylglycinami 98.7 4.3E-08 1.5E-12 98.6 11.0 97 28-150 106-203 (403)
52 2dwc_A PH0318, 433AA long hypo 98.7 3.9E-08 1.4E-12 100.0 10.1 101 28-151 117-219 (433)
53 3hbl_A Pyruvate carboxylase; T 98.7 5.7E-09 1.9E-13 118.3 3.6 110 29-161 116-228 (1150)
54 3vot_A L-amino acid ligase, BL 98.7 1.3E-07 4.6E-12 95.9 13.0 104 28-151 109-214 (425)
55 2i87_A D-alanine-D-alanine lig 98.7 1E-07 3.4E-12 95.0 11.5 94 30-151 128-229 (364)
56 1iow_A DD-ligase, DDLB, D-ALA\ 98.6 1.2E-07 4.2E-12 91.2 10.3 93 29-150 94-195 (306)
57 3lwb_A D-alanine--D-alanine li 98.6 8E-08 2.7E-12 96.4 7.9 96 29-152 149-247 (373)
58 1uc8_A LYSX, lysine biosynthes 98.5 5.8E-08 2E-12 92.0 5.7 98 29-151 86-187 (280)
59 3ln7_A Glutathione biosynthesi 98.5 1.8E-07 6.1E-12 101.6 9.3 95 31-153 489-589 (757)
60 1e4e_A Vancomycin/teicoplanin 98.5 1.3E-07 4.4E-12 93.4 6.7 93 30-152 131-224 (343)
61 3ax6_A Phosphoribosylaminoimid 98.4 2.7E-07 9.3E-12 92.1 7.0 98 27-161 96-194 (380)
62 2fb9_A D-alanine:D-alanine lig 98.4 2.7E-07 9.4E-12 90.4 6.8 93 29-151 116-209 (322)
63 2pvp_A D-alanine-D-alanine lig 98.4 3.4E-07 1.2E-11 91.6 7.3 91 29-147 147-243 (367)
64 2pn1_A Carbamoylphosphate synt 98.4 7.8E-07 2.7E-11 86.8 9.6 98 28-160 111-211 (331)
65 2r7k_A 5-formaminoimidazole-4- 98.1 7.2E-06 2.5E-10 81.8 10.1 92 29-151 122-215 (361)
66 3dmy_A Protein FDRA; predicted 98.1 7.5E-06 2.6E-10 84.3 9.9 121 290-421 111-236 (480)
67 3mwd_B ATP-citrate synthase; A 98.1 2.2E-05 7.4E-10 77.3 11.9 121 290-418 167-313 (334)
68 2fp4_A Succinyl-COA ligase [GD 98.0 1.3E-05 4.6E-10 78.0 9.1 125 290-417 151-296 (305)
69 2r85_A PURP protein PF1517; AT 98.0 1.9E-05 6.6E-10 76.6 10.1 92 29-152 98-190 (334)
70 4ffl_A PYLC; amino acid, biosy 98.0 7.8E-06 2.7E-10 80.9 7.3 77 28-152 100-177 (363)
71 1oi7_A Succinyl-COA synthetase 98.0 7.1E-05 2.4E-09 72.2 13.3 123 290-419 143-286 (288)
72 2yv2_A Succinyl-COA synthetase 97.9 4.9E-05 1.7E-09 73.7 10.3 124 290-419 150-294 (297)
73 1z2n_X Inositol 1,3,4-trisphos 97.9 4.6E-05 1.6E-09 73.9 9.9 92 29-151 96-191 (324)
74 2yv1_A Succinyl-COA ligase [AD 97.8 8.8E-05 3E-09 71.8 10.1 123 290-420 149-292 (294)
75 2nu8_A Succinyl-COA ligase [AD 97.8 0.00019 6.4E-09 69.2 12.2 123 290-419 143-286 (288)
76 3pff_A ATP-citrate synthase; p 97.4 0.00042 1.4E-08 75.5 10.1 124 290-419 653-800 (829)
77 1i7n_A Synapsin II; synapse, p 97.2 0.0005 1.7E-08 66.9 7.0 88 34-151 120-211 (309)
78 2csu_A 457AA long hypothetical 97.2 0.0031 1.1E-07 64.6 13.1 116 292-415 150-282 (457)
79 1gsa_A Glutathione synthetase; 97.1 0.00045 1.5E-08 66.0 5.9 91 30-150 123-216 (316)
80 2p0a_A Synapsin-3, synapsin II 96.9 0.001 3.5E-08 65.6 6.5 89 33-151 136-228 (344)
81 2pbz_A Hypothetical protein; N 96.9 0.00011 3.7E-09 72.1 -1.0 87 34-161 101-188 (320)
82 2q7d_A Inositol-tetrakisphosph 96.8 0.00091 3.1E-08 66.1 5.1 90 30-151 115-217 (346)
83 1pk8_A RAT synapsin I; ATP bin 96.8 0.0017 5.8E-08 65.5 6.5 88 34-151 232-323 (422)
84 3df7_A Putative ATP-grAsp supe 96.7 0.0013 4.6E-08 63.5 5.5 72 27-151 106-178 (305)
85 1c2y_A Protein (lumazine synth 87.6 3.8 0.00013 35.3 9.9 120 293-421 15-148 (156)
86 1ydh_A AT5G11950; structural g 86.7 3.5 0.00012 37.5 9.7 119 293-418 41-186 (216)
87 3nq4_A 6,7-dimethyl-8-ribityll 86.2 5.2 0.00018 34.5 9.9 119 293-421 14-149 (156)
88 1hqk_A 6,7-dimethyl-8-ribityll 84.4 5 0.00017 34.6 9.0 119 293-421 14-148 (154)
89 1rvv_A Riboflavin synthase; tr 83.8 4.6 0.00016 34.7 8.5 119 293-421 14-148 (154)
90 1kz1_A 6,7-dimethyl-8-ribityll 81.7 8.7 0.0003 33.2 9.4 120 293-421 19-155 (159)
91 2i0f_A 6,7-dimethyl-8-ribityll 79.6 11 0.00037 32.5 9.4 118 293-421 14-150 (157)
92 3t7a_A Inositol pyrophosphate 78.4 0.34 1.1E-05 46.8 -0.7 46 30-78 96-154 (330)
93 1ejb_A Lumazine synthase; anal 75.2 19 0.00064 31.4 9.6 120 293-420 18-160 (168)
94 2ehh_A DHDPS, dihydrodipicolin 73.6 31 0.0011 32.5 11.8 97 320-421 11-123 (294)
95 3sbx_A Putative uncharacterize 73.1 28 0.00095 30.8 10.5 117 293-416 44-187 (189)
96 2a33_A Hypothetical protein; s 72.7 16 0.00054 33.1 9.0 119 293-418 45-190 (215)
97 3l21_A DHDPS, dihydrodipicolin 72.3 44 0.0015 31.6 12.5 101 319-421 24-138 (304)
98 1o5k_A DHDPS, dihydrodipicolin 72.0 27 0.00091 33.2 10.9 98 319-421 22-135 (306)
99 1xky_A Dihydrodipicolinate syn 71.1 56 0.0019 30.8 13.0 98 320-421 22-135 (301)
100 2yxb_A Coenzyme B12-dependent 71.1 39 0.0013 28.8 10.8 118 291-420 18-143 (161)
101 1wek_A Hypothetical protein TT 70.2 9.3 0.00032 34.7 6.8 118 293-418 69-212 (217)
102 3tla_A MCCF; serine protease, 69.5 18 0.00063 35.5 9.3 110 291-409 43-166 (371)
103 2yxg_A DHDPS, dihydrodipicolin 68.4 32 0.0011 32.3 10.5 97 319-420 10-122 (289)
104 3cpr_A Dihydrodipicolinate syn 68.1 56 0.0019 30.8 12.3 97 320-420 26-138 (304)
105 3flu_A DHDPS, dihydrodipicolin 67.1 61 0.0021 30.4 12.3 98 320-421 17-130 (297)
106 2ojp_A DHDPS, dihydrodipicolin 67.1 62 0.0021 30.3 12.3 97 321-421 12-124 (292)
107 1rcu_A Conserved hypothetical 67.1 3.8 0.00013 36.7 3.4 114 292-418 57-191 (195)
108 1t35_A Hypothetical protein YV 66.5 16 0.00055 32.3 7.5 119 293-418 33-178 (191)
109 3rst_A Signal peptide peptidas 66.5 8.8 0.0003 35.2 6.0 58 327-386 28-88 (240)
110 3h5d_A DHDPS, dihydrodipicolin 66.4 54 0.0019 31.1 11.8 101 319-421 16-131 (311)
111 1f6k_A N-acetylneuraminate lya 65.6 41 0.0014 31.6 10.7 98 320-420 13-126 (293)
112 3b4u_A Dihydrodipicolinate syn 65.5 66 0.0023 30.1 12.1 100 320-421 13-127 (294)
113 4dpp_A DHDPS 2, dihydrodipicol 65.0 56 0.0019 31.9 11.7 111 306-420 53-181 (360)
114 1dbq_A Purine repressor; trans 63.8 23 0.0008 32.0 8.4 79 292-377 127-212 (289)
115 3fkr_A L-2-keto-3-deoxyarabona 63.3 51 0.0017 31.2 10.9 97 319-421 17-134 (309)
116 3qua_A Putative uncharacterize 63.3 48 0.0016 29.5 10.0 118 293-416 53-196 (199)
117 3dbi_A Sugar-binding transcrip 62.9 41 0.0014 31.4 10.2 79 292-377 182-267 (338)
118 2c92_A 6,7-dimethyl-8-ribityll 62.7 37 0.0013 29.3 8.7 119 293-421 19-151 (160)
119 3si9_A DHDPS, dihydrodipicolin 62.1 60 0.002 30.9 11.2 99 319-421 31-145 (315)
120 3s5o_A 4-hydroxy-2-oxoglutarat 62.1 68 0.0023 30.3 11.6 99 319-421 23-139 (307)
121 2xij_A Methylmalonyl-COA mutas 62.1 48 0.0017 35.7 11.3 119 291-420 604-729 (762)
122 3sr3_A Microcin immunity prote 61.9 34 0.0011 33.0 9.4 63 291-354 13-88 (336)
123 3h75_A Periplasmic sugar-bindi 61.6 61 0.0021 30.3 11.2 100 292-402 146-256 (350)
124 3qze_A DHDPS, dihydrodipicolin 61.4 59 0.002 30.9 11.0 99 319-421 32-146 (314)
125 3tak_A DHDPS, dihydrodipicolin 61.2 67 0.0023 30.0 11.2 98 320-421 11-124 (291)
126 1di0_A Lumazine synthase; tran 61.0 9.1 0.00031 33.0 4.6 86 293-383 12-112 (158)
127 3o9z_A Lipopolysaccaride biosy 60.8 54 0.0019 30.8 10.6 102 293-402 5-125 (312)
128 3qk7_A Transcriptional regulat 60.6 37 0.0013 30.9 9.3 79 292-377 127-212 (294)
129 2h0a_A TTHA0807, transcription 60.1 73 0.0025 28.3 11.1 89 292-387 115-218 (276)
130 3d8u_A PURR transcriptional re 59.8 79 0.0027 28.0 11.3 81 292-379 121-208 (275)
131 3ixl_A Amdase, arylmalonate de 59.4 88 0.003 28.3 11.4 100 292-402 118-226 (240)
132 3na8_A Putative dihydrodipicol 59.3 59 0.002 30.9 10.6 99 319-421 33-147 (315)
133 3gv0_A Transcriptional regulat 58.6 44 0.0015 30.2 9.4 79 292-377 128-213 (288)
134 3zxn_A RSBS, anti-sigma-factor 57.5 73 0.0025 25.5 10.8 97 322-421 16-119 (123)
135 2obx_A DMRL synthase 1, 6,7-di 56.9 9.4 0.00032 32.9 3.9 90 289-383 8-113 (157)
136 3oa2_A WBPB; oxidoreductase, s 56.8 56 0.0019 30.8 10.0 102 293-402 5-126 (318)
137 2wkj_A N-acetylneuraminate lya 56.6 81 0.0028 29.7 11.0 97 320-420 21-133 (303)
138 4h1h_A LMO1638 protein; MCCF-l 56.2 18 0.00063 34.7 6.4 64 291-355 12-88 (327)
139 3dz1_A Dihydrodipicolinate syn 56.0 75 0.0026 30.1 10.7 99 320-421 18-129 (313)
140 3fwz_A Inner membrane protein 55.1 82 0.0028 25.4 12.3 117 289-419 5-136 (140)
141 2v9d_A YAGE; dihydrodipicolini 54.9 94 0.0032 29.9 11.3 98 320-421 41-154 (343)
142 3e96_A Dihydrodipicolinate syn 54.7 60 0.0021 30.8 9.8 98 319-421 20-134 (316)
143 2fep_A Catabolite control prot 54.7 79 0.0027 28.5 10.4 78 292-376 134-219 (289)
144 1qpz_A PURA, protein (purine n 54.6 67 0.0023 29.9 10.1 81 292-379 178-265 (340)
145 3brq_A HTH-type transcriptiona 54.6 32 0.0011 31.0 7.6 79 292-377 140-225 (296)
146 3kke_A LACI family transcripti 54.5 68 0.0023 29.2 10.0 78 293-377 133-222 (303)
147 3bbl_A Regulatory protein of L 53.4 80 0.0027 28.4 10.2 79 292-377 126-213 (287)
148 3k4h_A Putative transcriptiona 53.3 77 0.0026 28.4 10.1 78 293-377 133-217 (292)
149 3n6x_A Putative glutathionylsp 53.2 23 0.00079 36.0 6.7 79 34-140 330-412 (474)
150 3g85_A Transcriptional regulat 51.0 69 0.0024 28.8 9.3 79 292-377 128-213 (289)
151 4eys_A MCCC family protein; MC 50.2 60 0.002 31.3 9.0 64 290-354 4-82 (346)
152 3qfe_A Putative dihydrodipicol 49.9 58 0.002 31.0 8.8 98 319-421 19-136 (318)
153 2f62_A Nucleoside 2-deoxyribos 49.9 30 0.001 29.7 6.1 105 308-421 33-159 (161)
154 2rgy_A Transcriptional regulat 49.2 86 0.0029 28.2 9.7 79 292-377 129-214 (290)
155 2r8w_A AGR_C_1641P; APC7498, d 49.2 1.4E+02 0.005 28.4 11.6 98 319-420 43-156 (332)
156 3gyb_A Transcriptional regulat 49.1 83 0.0028 28.0 9.5 77 292-376 119-200 (280)
157 1p9l_A Dihydrodipicolinate red 48.9 75 0.0026 29.0 9.1 110 293-421 2-117 (245)
158 2cby_A ATP-dependent CLP prote 48.4 33 0.0011 30.5 6.4 60 322-386 30-94 (208)
159 2kln_A Probable sulphate-trans 48.2 45 0.0015 26.8 6.7 83 330-417 30-122 (130)
160 3bq9_A Predicted rossmann fold 47.1 55 0.0019 33.0 8.2 122 292-419 174-329 (460)
161 4e5s_A MCCFLIKE protein (BA_56 46.7 37 0.0013 32.7 6.8 64 291-355 12-88 (331)
162 1tjy_A Sugar transport protein 46.2 1.8E+02 0.006 26.6 13.4 117 292-418 129-253 (316)
163 3d0c_A Dihydrodipicolinate syn 46.1 99 0.0034 29.2 9.8 98 319-421 20-134 (314)
164 3clk_A Transcription regulator 45.5 31 0.0011 31.3 6.0 79 292-377 126-210 (290)
165 3m5v_A DHDPS, dihydrodipicolin 45.4 1.5E+02 0.005 27.8 10.8 95 325-421 22-131 (301)
166 1weh_A Conserved hypothetical 45.3 35 0.0012 29.4 5.9 115 293-418 33-170 (171)
167 3u3x_A Oxidoreductase; structu 45.2 1.7E+02 0.0058 27.9 11.5 106 286-403 19-142 (361)
168 2lqo_A Putative glutaredoxin R 44.3 74 0.0025 24.3 7.0 69 30-115 15-86 (92)
169 2xed_A Putative maleate isomer 44.3 1.3E+02 0.0044 27.7 10.1 100 292-402 147-254 (273)
170 2p2s_A Putative oxidoreductase 44.1 1.2E+02 0.0042 28.3 10.2 103 293-403 6-120 (336)
171 2o20_A Catabolite control prot 44.0 1.1E+02 0.0039 28.2 9.8 80 292-379 181-266 (332)
172 4fgs_A Probable dehydrogenase 43.9 76 0.0026 29.5 8.4 66 289-354 26-112 (273)
173 2hsg_A Glucose-resistance amyl 43.5 1.1E+02 0.0036 28.3 9.5 79 292-377 178-264 (332)
174 2r91_A 2-keto-3-deoxy-(6-phosp 43.3 1.8E+02 0.0061 26.9 11.0 97 320-421 9-119 (286)
175 3a5f_A Dihydrodipicolinate syn 43.3 91 0.0031 29.1 8.9 75 321-400 13-96 (291)
176 3eb2_A Putative dihydrodipicol 42.9 60 0.0021 30.6 7.6 99 319-421 13-127 (300)
177 3g1w_A Sugar ABC transporter; 42.8 1.9E+02 0.0064 26.0 12.6 98 293-400 129-234 (305)
178 1yg6_A ATP-dependent CLP prote 42.2 43 0.0015 29.3 6.1 53 330-387 40-94 (193)
179 3daq_A DHDPS, dihydrodipicolin 41.7 1.3E+02 0.0043 28.1 9.7 96 321-421 14-125 (292)
180 3rot_A ABC sugar transporter, 41.6 2E+02 0.0067 25.9 12.1 75 291-375 130-211 (297)
181 3o1i_D Periplasmic protein TOR 41.5 54 0.0019 29.6 7.0 117 293-420 138-264 (304)
182 3egc_A Putative ribose operon 41.5 75 0.0026 28.6 8.0 78 292-376 126-210 (291)
183 4b4u_A Bifunctional protein fo 40.4 47 0.0016 31.6 6.3 64 291-355 53-121 (303)
184 2vc6_A MOSA, dihydrodipicolina 40.1 1.3E+02 0.0043 28.1 9.4 92 325-420 15-122 (292)
185 2b99_A Riboflavin synthase; lu 39.6 36 0.0012 29.2 4.8 84 293-383 4-98 (156)
186 3kjx_A Transcriptional regulat 39.3 1E+02 0.0035 28.7 8.7 80 293-379 187-274 (344)
187 3cs3_A Sugar-binding transcrip 39.1 1.1E+02 0.0039 27.1 8.8 76 292-377 119-202 (277)
188 3bf0_A Protease 4; bacterial, 38.9 25 0.00085 36.7 4.5 57 327-386 321-380 (593)
189 3jvd_A Transcriptional regulat 38.1 1.7E+02 0.0058 27.1 10.0 74 292-377 175-256 (333)
190 2c2x_A Methylenetetrahydrofola 38.1 44 0.0015 31.4 5.7 62 292-354 33-99 (281)
191 4ew6_A D-galactose-1-dehydroge 37.9 29 0.001 33.0 4.6 107 287-402 20-134 (330)
192 3h5o_A Transcriptional regulat 37.7 2.1E+02 0.0073 26.3 10.7 81 292-379 179-266 (339)
193 3ngx_A Bifunctional protein fo 37.5 32 0.0011 32.3 4.6 63 290-354 26-93 (276)
194 3evn_A Oxidoreductase, GFO/IDH 37.5 51 0.0017 31.1 6.2 99 293-403 7-121 (329)
195 4h3v_A Oxidoreductase domain p 37.2 70 0.0024 30.4 7.3 59 337-403 67-132 (390)
196 3gh1_A Predicted nucleotide-bi 36.7 68 0.0023 32.2 7.0 73 346-419 248-331 (462)
197 4ei7_A Plasmid replication pro 36.6 2E+02 0.0069 28.1 10.5 24 292-316 16-39 (389)
198 1y7o_A ATP-dependent CLP prote 36.5 59 0.002 29.1 6.1 51 331-386 60-112 (218)
199 3iwt_A 178AA long hypothetical 36.3 1.1E+02 0.0039 25.9 7.8 64 293-359 17-95 (178)
200 3m9w_A D-xylose-binding peripl 36.2 1.9E+02 0.0066 26.1 10.0 77 293-376 125-212 (313)
201 4fb5_A Probable oxidoreductase 35.7 50 0.0017 31.4 5.9 58 337-402 86-147 (393)
202 3l07_A Bifunctional protein fo 35.4 54 0.0019 30.9 5.8 64 291-355 34-102 (285)
203 1jye_A Lactose operon represso 35.2 2.2E+02 0.0075 26.4 10.4 77 292-377 180-263 (349)
204 3c3k_A Alanine racemase; struc 35.0 1.7E+02 0.0059 26.0 9.3 78 292-379 125-211 (285)
205 3gbv_A Putative LACI-family tr 34.8 2.1E+02 0.0072 25.4 9.9 87 292-387 136-234 (304)
206 4a26_A Putative C-1-tetrahydro 34.8 54 0.0019 31.1 5.8 63 291-354 37-104 (300)
207 1b0a_A Protein (fold bifunctio 34.6 43 0.0015 31.6 5.0 62 292-354 34-100 (288)
208 4a5o_A Bifunctional protein fo 34.5 56 0.0019 30.8 5.8 62 292-354 36-102 (286)
209 3p2o_A Bifunctional protein fo 32.8 60 0.0021 30.6 5.7 63 291-354 33-100 (285)
210 3l6u_A ABC-type sugar transpor 32.6 2.6E+02 0.009 24.7 12.4 76 292-376 136-219 (293)
211 3hs3_A Ribose operon repressor 32.5 1.2E+02 0.0043 27.0 7.8 74 293-377 124-203 (277)
212 3uug_A Multiple sugar-binding 32.1 2.2E+02 0.0074 25.9 9.6 44 326-376 181-228 (330)
213 1ccw_A Protein (glutamate muta 32.1 2E+02 0.007 23.3 9.7 116 292-419 4-133 (137)
214 1zl0_A Hypothetical protein PA 32.0 71 0.0024 30.4 6.2 64 291-355 17-90 (311)
215 1jx6_A LUXP protein; protein-l 31.4 3E+02 0.01 25.1 11.6 107 292-409 176-289 (342)
216 4fs3_A Enoyl-[acyl-carrier-pro 31.3 1.8E+02 0.006 26.1 8.6 29 289-317 3-34 (256)
217 2rfg_A Dihydrodipicolinate syn 31.1 2.4E+02 0.0083 26.2 9.8 92 325-420 15-122 (297)
218 3kbq_A Protein TA0487; structu 30.3 2.6E+02 0.0089 24.0 9.0 75 293-371 5-88 (172)
219 4had_A Probable oxidoreductase 30.3 50 0.0017 31.3 4.8 60 336-403 77-140 (350)
220 2fvy_A D-galactose-binding per 30.2 2.9E+02 0.01 24.5 14.1 75 293-375 142-226 (309)
221 2uva_G Fatty acid synthase bet 30.0 73 0.0025 38.4 6.9 94 325-420 615-713 (2060)
222 3nxk_A Cytoplasmic L-asparagin 29.8 82 0.0028 30.3 6.2 78 336-420 237-318 (334)
223 4dgh_A Sulfate permease family 29.8 2.1E+02 0.007 22.6 10.4 82 333-420 38-126 (130)
224 2x7x_A Sensor protein; transfe 29.7 3.1E+02 0.011 24.9 10.3 74 293-375 130-211 (325)
225 4fn4_A Short chain dehydrogena 29.5 1.3E+02 0.0044 27.5 7.3 68 286-353 1-92 (254)
226 3ksm_A ABC-type sugar transpor 29.2 2.4E+02 0.0081 24.6 9.1 64 326-398 167-232 (276)
227 3viv_A 441AA long hypothetical 29.0 1.6E+02 0.0056 26.5 7.8 51 331-387 25-80 (230)
228 3oix_A Putative dihydroorotate 28.8 2.6E+02 0.0089 26.8 9.7 72 328-400 138-217 (345)
229 1a4i_A Methylenetetrahydrofola 28.7 56 0.0019 31.0 4.7 62 292-354 36-102 (301)
230 2qu7_A Putative transcriptiona 28.6 2.7E+02 0.0094 24.6 9.5 88 292-387 123-225 (288)
231 2g1u_A Hypothetical protein TM 28.5 2.4E+02 0.008 22.9 10.7 116 291-421 19-150 (155)
232 2pcq_A Putative dihydrodipicol 28.4 67 0.0023 29.9 5.3 93 321-420 9-116 (283)
233 2i4r_A V-type ATP synthase sub 28.3 35 0.0012 27.0 2.7 52 328-387 36-89 (102)
234 2vk2_A YTFQ, ABC transporter p 28.3 1.8E+02 0.006 26.3 8.2 117 292-419 129-262 (306)
235 3llo_A Prestin; STAS domain, c 28.1 1.8E+02 0.0061 23.4 7.4 103 291-416 28-138 (143)
236 2hmc_A AGR_L_411P, dihydrodipi 27.8 3.3E+02 0.011 26.0 10.2 98 320-421 36-147 (344)
237 2pjk_A 178AA long hypothetical 27.7 1.6E+02 0.0056 25.2 7.3 66 291-358 15-94 (178)
238 3u4j_A NAD-dependent aldehyde 27.5 2.4E+02 0.0082 28.7 9.7 72 303-387 203-274 (528)
239 3mm4_A Histidine kinase homolo 27.3 2.9E+02 0.0098 23.4 12.2 100 293-401 63-175 (206)
240 3fhl_A Putative oxidoreductase 27.1 1.2E+02 0.0042 28.8 7.0 61 335-403 55-119 (362)
241 3h5t_A Transcriptional regulat 26.9 1.4E+02 0.0047 28.0 7.3 64 307-377 228-293 (366)
242 1req_A Methylmalonyl-COA mutas 26.9 2E+02 0.0069 30.7 9.0 119 291-419 596-720 (727)
243 4e4g_A Methylmalonate-semialde 26.6 3E+02 0.01 27.9 10.2 71 303-387 204-274 (521)
244 3zwc_A Peroxisomal bifunctiona 26.5 2E+02 0.0067 30.8 9.0 79 286-387 23-116 (742)
245 3k9c_A Transcriptional regulat 26.1 1.4E+02 0.0047 26.8 7.0 77 293-377 128-210 (289)
246 3k2w_A Betaine-aldehyde dehydr 26.0 2.6E+02 0.009 28.0 9.6 72 303-387 190-261 (497)
247 3miz_A Putative transcriptiona 26.0 94 0.0032 28.1 5.8 80 293-379 133-224 (301)
248 4gqa_A NAD binding oxidoreduct 26.0 1.2E+02 0.004 29.5 6.8 109 285-402 18-149 (412)
249 3r31_A BADH, betaine aldehyde 26.0 3E+02 0.01 27.9 10.0 71 303-387 192-262 (517)
250 2iks_A DNA-binding transcripti 25.9 2E+02 0.0069 25.6 8.1 74 292-375 139-220 (293)
251 3t6o_A Sulfate transporter/ant 25.8 2.3E+02 0.008 21.9 9.3 79 332-416 34-119 (121)
252 3huu_A Transcription regulator 25.1 1.4E+02 0.0047 27.1 6.8 76 292-377 145-227 (305)
253 2nuw_A 2-keto-3-deoxygluconate 25.0 4.1E+02 0.014 24.4 10.4 98 321-421 10-120 (288)
254 2dc1_A L-aspartate dehydrogena 24.3 1.4E+02 0.0047 26.5 6.4 98 293-402 2-104 (236)
255 3qwd_A ATP-dependent CLP prote 24.2 1.4E+02 0.0049 26.3 6.3 59 323-386 31-94 (203)
256 1gud_A ALBP, D-allose-binding 24.1 3.8E+02 0.013 23.8 12.7 75 292-375 134-216 (288)
257 3ndc_A Precorrin-4 C(11)-methy 23.5 1.7E+02 0.0057 26.8 6.9 56 360-418 62-122 (264)
258 1c41_A Lumazine synthase; ribo 29.3 17 0.00058 32.5 0.0 73 343-420 108-188 (200)
259 2nu8_A Succinyl-COA ligase [AD 23.5 43 0.0015 31.4 2.9 103 292-402 8-117 (288)
260 2h3h_A Sugar ABC transporter, 23.3 4E+02 0.014 23.8 11.6 75 292-375 124-205 (313)
261 2rjn_A Response regulator rece 23.3 2.7E+02 0.0093 21.8 10.7 95 293-401 9-103 (154)
262 3lp8_A Phosphoribosylamine-gly 23.3 97 0.0033 30.6 5.6 114 293-417 23-155 (442)
263 3bf0_A Protease 4; bacterial, 23.3 70 0.0024 33.3 4.7 54 328-384 70-127 (593)
264 2rjo_A Twin-arginine transloca 23.1 3.8E+02 0.013 24.3 9.6 74 293-375 138-220 (332)
265 2d59_A Hypothetical protein PH 23.0 40 0.0014 27.9 2.3 101 291-402 22-126 (144)
266 2pbq_A Molybdenum cofactor bio 22.9 3E+02 0.01 23.4 8.1 65 292-359 6-82 (178)
267 2ioy_A Periplasmic sugar-bindi 22.8 3.9E+02 0.013 23.5 13.1 76 292-376 124-207 (283)
268 3rh9_A Succinate-semialdehyde 22.7 2.2E+02 0.0074 28.8 8.2 72 303-387 189-260 (506)
269 3ju8_A Succinylglutamic semial 22.6 3.1E+02 0.011 27.4 9.3 71 303-387 181-252 (490)
270 3ezx_A MMCP 1, monomethylamine 22.3 4E+02 0.014 23.4 9.8 114 291-419 92-214 (215)
271 4dgf_A Sulfate transporter sul 22.0 2.6E+02 0.0088 22.3 7.2 103 290-420 20-129 (135)
272 3e3m_A Transcriptional regulat 22.0 2.5E+02 0.0084 26.1 8.1 78 293-377 189-275 (355)
273 2dri_A D-ribose-binding protei 21.9 4E+02 0.014 23.3 13.4 86 292-386 124-216 (271)
274 2r3b_A YJEF-related protein; p 21.9 52 0.0018 31.2 3.1 26 291-316 44-72 (310)
275 4f2d_A L-arabinose isomerase; 21.9 3.3E+02 0.011 27.6 9.3 70 307-383 34-103 (500)
276 1f76_A Dihydroorotate dehydrog 21.6 2.9E+02 0.0099 25.9 8.5 71 330-402 152-240 (336)
277 2lnd_A De novo designed protei 21.6 2.6E+02 0.009 21.0 6.4 55 363-419 39-98 (112)
278 1tg6_A Putative ATP-dependent 21.5 1.5E+02 0.0051 27.7 6.1 61 321-386 84-149 (277)
279 3r64_A NAD dependent benzaldeh 21.4 4E+02 0.014 26.8 9.9 72 305-387 193-264 (508)
280 1th8_B Anti-sigma F factor ant 21.3 2E+02 0.0068 21.7 6.1 81 332-416 29-113 (116)
281 3mvn_A UDP-N-acetylmuramate:L- 21.3 2.8E+02 0.0095 23.0 7.5 92 326-421 43-137 (163)
282 4imr_A 3-oxoacyl-(acyl-carrier 21.3 1.6E+02 0.0054 26.7 6.3 65 290-354 31-118 (275)
283 3hcw_A Maltose operon transcri 21.3 2E+02 0.0068 25.8 7.0 78 292-379 132-219 (295)
284 2f6i_A ATP-dependent CLP prote 21.2 1.7E+02 0.0058 26.0 6.3 49 332-386 55-105 (215)
285 1y81_A Conserved hypothetical 21.2 1.5E+02 0.0051 24.2 5.5 101 291-402 14-118 (138)
286 1h4x_A SPOIIAA, anti-sigma F f 21.0 1.7E+02 0.0059 22.3 5.7 84 333-420 29-115 (117)
287 3bzy_B ESCU; auto cleavage pro 20.9 72 0.0024 24.2 3.1 32 377-410 16-48 (83)
288 4h15_A Short chain alcohol deh 20.8 2E+02 0.0069 26.1 6.9 68 286-353 5-86 (261)
289 1mkz_A Molybdenum cofactor bio 20.6 2.3E+02 0.0079 24.0 6.8 64 293-358 12-82 (172)
290 3bgk_A SMU.573, putative uncha 20.4 61 0.0021 30.8 3.2 26 291-316 58-86 (311)
291 3ohs_X Trans-1,2-dihydrobenzen 20.2 1.8E+02 0.0061 27.2 6.6 58 337-402 58-119 (334)
292 1w3i_A EDA, 2-keto-3-deoxy glu 20.2 5.1E+02 0.017 23.8 11.5 98 321-421 10-120 (293)
293 8abp_A L-arabinose-binding pro 20.1 4.5E+02 0.015 23.2 9.3 64 308-376 156-221 (306)
294 4e16_A Precorrin-4 C(11)-methy 20.1 1.9E+02 0.0065 26.1 6.5 56 360-418 63-123 (253)
No 1
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=4.6e-82 Score=640.93 Aligned_cols=392 Identities=51% Similarity=0.830 Sum_probs=370.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCC-eEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~-PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
|+|+||++|++|++||||+|++.+++|++|+.++++++ | | |+|+|+++.+|||||+++||+..|||+++ |+++++
T Consensus 1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~l--g-~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~ 77 (395)
T 2fp4_B 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--N-AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVG 77 (395)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--T-CSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHH
T ss_pred CCCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHc--C-CCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHH
Confidence 78999999999999999999999999999999999999 8 8 89999999899999999998844999999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~ 185 (422)
+++++++++.+.++++++.|..+++++||+|++.++|+|+++.+|+.|++|++++|.+||++||.+..++||+++++|++
T Consensus 78 ~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~id 157 (395)
T 2fp4_B 78 QLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQID 157 (395)
T ss_dssp HHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECC
T ss_pred HHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecC
Confidence 99999988764455655567767899999999999999999999999955999999999999999987789999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCccccchhhc
Q 014588 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF 265 (422)
Q Consensus 186 p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~ 265 (422)
|..++++++|++|++.+|+++.+.+++++++.+||++|.+.++.++|||||+++++|+++|+||++.+|++|.|||+++.
T Consensus 158 p~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~ 237 (395)
T 2fp4_B 158 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF 237 (395)
T ss_dssp TTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHH
T ss_pred CCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchh
Confidence 99999999999999999999999999999999999999999999999999999998779999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCC
Q 014588 266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK 345 (422)
Q Consensus 266 ~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~ 345 (422)
++++..++++.|..|.+.+++|++++|||+||+||||++|+++|++..+|++|+||+|++|+++.+++.++++++++||+
T Consensus 238 ~~~d~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a~~e~~~~al~~il~d~~ 317 (395)
T 2fp4_B 238 AMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPK 317 (395)
T ss_dssp TTCCCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTT
T ss_pred hhcCCCccChhhhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhhC
Q 014588 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIAS 422 (422)
Q Consensus 346 vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~~ 422 (422)
+|+||||++|++++|+.+|++|+++.++.+.+||||++++|++.++++++|+++|+|++.|+++++|++++++++++
T Consensus 318 v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 318 VEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASVTK 394 (395)
T ss_dssp CCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCCEECSSHHHHHHHHHHTTC-
T ss_pred CCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHCCCceEeCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999986668999999999989999999999999955559999999999999864
No 2
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=3.1e-79 Score=619.62 Aligned_cols=385 Identities=45% Similarity=0.743 Sum_probs=363.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCe-EEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~P-vVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
|+|+||++|++|++||||+|++.+++|++|+.++++++ | || +|+|++...|||||+ |||+++ |+++++
T Consensus 1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~l--G-~P~vVvK~~~~~ggrg~~-------gGV~l~~s~eel~ 70 (388)
T 2nu8_B 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKI--G-AGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIR 70 (388)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--C-SSCEEEEECCSSSCTTTT-------TCEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHh--C-CCeEEEEEecCCCCCCcc-------CCEEEECCHHHHH
Confidence 78999999999999999999999999999999999999 9 89 999999877888884 999999 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 185 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~ 185 (422)
+++++++++...++++++.|..+++++||+|+++++|+|+++.+|+.|++|++++|.+||+++|.+.+++||.+++++++
T Consensus 71 ~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~ 150 (388)
T 2nu8_B 71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD 150 (388)
T ss_dssp HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECB
T ss_pred HHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecC
Confidence 99999987654445555566667899999999989999999999999944999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCccccchhhc
Q 014588 186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF 265 (422)
Q Consensus 186 p~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~ 265 (422)
|..+++++++++|++.+|+++.+++++++++.+||++|.++++.++|||||+++++|+++|+||++.+|++|.|||+++.
T Consensus 151 P~~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~~~ 230 (388)
T 2nu8_B 151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR 230 (388)
T ss_dssp TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcchh
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCC
Q 014588 266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK 345 (422)
Q Consensus 266 ~~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~ 345 (422)
.+++..++++.|..|.+.+++|++++|||+||+||||++|+++|++..+|++|+||+|++|+++.+++.++++++++||+
T Consensus 231 ~~~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~Gg~~aNflD~gG~a~~~~~~~~~~~il~d~~ 310 (388)
T 2nu8_B 231 EMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDK 310 (388)
T ss_dssp HHCCGGGSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTT
T ss_pred hhcCccccChhHHHHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHcCCCcCceeEecCCCCHHHHHHHHHHHhcCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhhC
Q 014588 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIAS 422 (422)
Q Consensus 346 vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~~ 422 (422)
+|+||||++|++++|+.+|++|+++.++.+.+||||++++|++.++++++|+++|+|++.++++++|++++++++++
T Consensus 311 v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~~~l~~~g~~~~~~~~~~~aa~~~v~~~~~ 387 (388)
T 2nu8_B 311 VKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEG 387 (388)
T ss_dssp CCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCSSEEECSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHCCCceecCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999886678999999999999999999999999955559999999999999864
No 3
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=3.5e-80 Score=627.95 Aligned_cols=374 Identities=36% Similarity=0.599 Sum_probs=354.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
|+|+||++|++|++||||+|++.+++|++|+.++++++ | ||||+|+++..+|||| .|||+++ |++++++
T Consensus 1 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~l--G-~PvVvKa~~~~ggkg~-------~GGV~l~~s~ee~~~ 70 (397)
T 3ufx_B 1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEF--G-KRVVIKAQVHVGGRGK-------AGGVKLADTPQEAYE 70 (397)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--T-SCEEEEECCSSSCTTT-------TTCEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHc--C-CCEEEEEccccCCCCc-------cceEEEeCCHHHHHH
Confidence 78999999999999999999999999999999999999 9 8999999987778887 4999999 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEEEEecCC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV 186 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~~~~i~p 186 (422)
++++++++.. .|..+++++||+|+++++|+|+|+.+|+.|++|+|+||..||++||.+++++||.+++++++|
T Consensus 71 a~~~~~~~~~-------~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~ 143 (397)
T 3ufx_B 71 KAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDP 143 (397)
T ss_dssp HHHHHTTCEE-------TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBT
T ss_pred HHHHhhhhhc-------cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCC
Confidence 9999987652 355578999999999899999999999999559999998999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeCCCccccchhhcc
Q 014588 187 FNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266 (422)
Q Consensus 187 ~~~l~~~~a~~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~~ 266 (422)
..++++++|++|++++|+++. ++++++++.+||++|.+++..++|||||+++++|+++|+||++.+||||.|||+++..
T Consensus 144 ~~~l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~~~~ 222 (397)
T 3ufx_B 144 HKGFRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAE 222 (397)
T ss_dssp TTBCCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHHHHT
T ss_pred CCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchhhhh
Confidence 888999999999999999988 9999999999999999999899999999999988899999999999999999999999
Q ss_pred cCCCCCCCHHHHHHhhcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCc
Q 014588 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKV 346 (422)
Q Consensus 267 ~~~~~~~~~~e~~a~~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~v 346 (422)
+++..++++.|.+|.+.+++|++++|||||||||||++|+++|++..+|++++||+|++|+++++.|.++++++++||++
T Consensus 223 ~~~~~~~~~~e~~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~~aN~lD~gG~a~~e~~~~al~~~l~d~~v 302 (397)
T 3ufx_B 223 LREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKADVVYNALKVVLKDPDV 302 (397)
T ss_dssp THHHHCSSHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSCCCHHHHHHHHHHHHTCTTC
T ss_pred hcCcccCCHhHHHHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHcCCCcCCcEecCCCCCHHHHHHHHHHHHcCCCC
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 347 KAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 347 d~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
|+|+||+++++++|+.+|++|+++.++.+.+||||+++.|++.++++++|+++||| +|++|++|+++++++++
T Consensus 303 ~~ilv~i~ggi~~~~~vA~~i~~a~~~~~~~kPvvv~~~G~~~~~~~~~l~~~gip--~~~~~e~Aa~~~~~l~~ 375 (397)
T 3ufx_B 303 KGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKLLEGKPVY--MYPTSIEAAKVTVAMKG 375 (397)
T ss_dssp CEEEEEEEEEEEESHHHHHHHHHHHTTTCCCSCEEEEEEEECHHHHHHHTTTSSEE--ECSSHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhhCCCCcEEEEccCCCHHHHHHHHHhCCCc--ccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998755589999997777888999999999999 99999999999999875
No 4
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=1.9e-69 Score=550.63 Aligned_cols=371 Identities=24% Similarity=0.292 Sum_probs=321.6
Q ss_pred cCCCHHHHHHHHHHcCC---C---CCCeeeeCC---HHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEE
Q 014588 28 LNIHEYQGAELMAKYGI---N---VPKGLAVAS---VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GI---p---vp~~~~~~s---~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l 98 (422)
..++||++|+||.+||+ | .+++..+++ ++|+.++++++ |.+|||+|+|++++|||| +|||++
T Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~l--g~~pvVvKaqv~~ggRgk-------~GGV~l 74 (425)
T 3mwd_A 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWL--LSQNLVVKPDQLIKRRGK-------LGLVGV 74 (425)
T ss_dssp EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGG--GTSCEEEEECSSCSCTTT-------TTCCEE
T ss_pred hhHhHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHh--CCCCEEEEeccccCCCCc-------CCeEEE
Confidence 46899999999999999 4 234667765 49999999999 757999999999999998 599999
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCC--CceEEEEEEecCCCCCceeeeccCCCceeeeccccC
Q 014588 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY 175 (422)
Q Consensus 99 ~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~--g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~ 175 (422)
+ |++++++++++|+++.. ++..++..+.+|+||+|+++ ++|+|+|+++||. ||+|+||..||++||.++++
T Consensus 75 ~~s~eev~~aa~~ml~~~~---~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~--gpvI~~s~~GGv~IE~vad~- 148 (425)
T 3mwd_A 75 NLTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAK- 148 (425)
T ss_dssp EECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCSHHHH-
T ss_pred ECCHHHHHHHHHHHHhhhh---hccCCCceEEEEEEEecccCCCCceEEEEEEecCC--CCEEEEECCCCccHhHhhcc-
Confidence 9 99999999999998763 12123455789999999975 5899999999998 89999998999999999865
Q ss_pred CCeEEEEecCCCCCCCHHHHH-HHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeC
Q 014588 176 PNMIVKVPIDVFNGITDEDAA-KVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFD 254 (422)
Q Consensus 176 ~d~~~~~~i~p~~~l~~~~a~-~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld 254 (422)
..++|++|..+++.++++ +++. |+++.+++++++++.+||++|.+.+++++|||||+++++| ++|+||++.+|
T Consensus 149 ---~~~~~i~~~~~l~~~~~~~~ll~--g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki~lD 222 (425)
T 3mwd_A 149 ---AQKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVD 222 (425)
T ss_dssp ---SEEEEEETTCCCCHHHHHHTTTT--TSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEEEE
T ss_pred ---cceEecCCccccCHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEeceeecc
Confidence 345678887778887774 3332 6788999999999999999999999999999999999998 99999999999
Q ss_pred CCccccchhhccc-CCC----CCCCHHHHHHh--------hcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCC--CCC
Q 014588 255 DNAAFRQKEIFAL-RDP----TQEDPREVAAA--------KADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGG--TPA 319 (422)
Q Consensus 255 ~~a~~r~~~~~~~-~~~----~~~~~~e~~a~--------~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~--~~~ 319 (422)
|||.|||+..|.. +++ .+.++.|..+. +.+++|++++|+||+|+||||++|.|+|++..+|+ +|+
T Consensus 223 DnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~Gg~~~pA 302 (425)
T 3mwd_A 223 ATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELA 302 (425)
T ss_dssp GGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCGGGBC
T ss_pred cchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHcCCCcCCc
Confidence 9999999876554 333 45677776653 35799999999999999999999999999999999 799
Q ss_pred CeeeccCCCCHHHHHH----HHHHHHcCCCccEEEEEccCCCCChHHHH---HHHHHHHHhc-----CCCCcEEEEeCCC
Q 014588 320 NFLDVGGNASEGQVVE----AFKILTSDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQV-----ALKVPVVVRLEGT 387 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~----al~~ll~d~~vd~ilv~i~~~~~~~~~~a---~~i~~~~~~~-----~~~kpivv~~~g~ 387 (422)
||+|++|+++.+++++ +++++++||+++++|||++|++++|+.+| ++|+++.++. +.++|||+++.|+
T Consensus 303 NflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gt 382 (425)
T 3mwd_A 303 NYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGP 382 (425)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBST
T ss_pred ceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcC
Confidence 9999999999998765 59999999999999999999999999999 9999999875 3589999999999
Q ss_pred CHHHHHHHHHHcC----CCcccccCHHHHHHHHHHHh
Q 014588 388 NVDQGKRILKESG----MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 388 ~~~~~~~~L~~~G----ip~~vf~~~e~Av~al~~~~ 420 (422)
+.++++++|+++| +|+++|. |+.+++.++.+|
T Consensus 383 n~~eg~~il~~~g~~lgip~~~~g-pe~~~~~i~~~a 418 (425)
T 3mwd_A 383 NYQEGLRVMGEVGKTTGIPIHVFG-TETHMTAIVGMA 418 (425)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEC-TTSCTTHHHHHH
T ss_pred CHHHHHHHHHhCCcccCCceEEeC-ccchHHHHHHHH
Confidence 9999999999998 9955442 888888888765
No 5
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-65 Score=554.05 Aligned_cols=370 Identities=24% Similarity=0.293 Sum_probs=321.7
Q ss_pred cCCCHHHHHHHHHHcCCC------CCCeeeeCCH---HHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEE
Q 014588 28 LNIHEYQGAELMAKYGIN------VPKGLAVASV---DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIp------vp~~~~~~s~---~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l 98 (422)
..++||++|+||++|++| .+++..++++ +|+.++++++ |.+|||+|+|++.||||| +|||++
T Consensus 4 k~i~Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~l--g~~pvVvKaQv~~GgRGK-------aGGVkL 74 (829)
T 3pff_A 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWL--LSQNLVVKPDQLIKRRGK-------LGLVGV 74 (829)
T ss_dssp EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHH--HHSCEEEEECSSCSCTTT-------TTCCEE
T ss_pred hhHhHHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHh--CCCCEEEEecccccCCCc-------CCeEEE
Confidence 468999999999999999 5677777665 8999999999 647999999999999999 599999
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCC--CceEEEEEEecCCCCCceeeeccCCCceeeeccccC
Q 014588 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY 175 (422)
Q Consensus 99 ~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~--g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~ 175 (422)
+ |++|+++++++|+++.. ++..++..+.+|+||+|+++ ++|+|+|+++||. ||+|+||.+||++||.++|+
T Consensus 75 ~~s~eEa~~aa~~iLg~~~---~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~--gpvIm~s~eGGvdIE~vad~- 148 (829)
T 3pff_A 75 NLTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAK- 148 (829)
T ss_dssp EECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCCHHHH-
T ss_pred ECCHHHHHHHHHHHHHHHH---hhcCCCceEEEEEEEecccCCCccEEEEEEEecCC--CCEEEEECCCCcchhhhhhh-
Confidence 9 99999999999998863 11123455789999999974 5999999999998 89999999999999999864
Q ss_pred CCeEEEEecCCCCCCCHHHHH-HHHHhCCCCcccHHHHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEeeC
Q 014588 176 PNMIVKVPIDVFNGITDEDAA-KVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFD 254 (422)
Q Consensus 176 ~d~~~~~~i~p~~~l~~~~a~-~l~~~lg~~~~d~~~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~ld 254 (422)
++++|++|..++++++++ +++. |+++.++++++++|.+||++|.+.++.++|||||+++++| ++|+||||.+|
T Consensus 149 ---~~~~~I~p~~gl~~~~a~~~ll~--g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~lD 222 (829)
T 3pff_A 149 ---AQKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVD 222 (829)
T ss_dssp ---SEEEEEETTCCCCHHHHHHTTTT--TSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEEEE
T ss_pred ---ceEEecCCccccCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceeeec
Confidence 456889999899999884 3443 6788999999999999999999999999999999999998 99999999999
Q ss_pred CCccccchhhccc-CCC----CCCCHHHHHHh--------hcCCceecCCCeEEEEEcCccHHHHHHHHHHHCCC--CCC
Q 014588 255 DNAAFRQKEIFAL-RDP----TQEDPREVAAA--------KADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGG--TPA 319 (422)
Q Consensus 255 ~~a~~r~~~~~~~-~~~----~~~~~~e~~a~--------~~~~~~~~~~g~vaiitngGG~gv~~~D~l~~~G~--~~~ 319 (422)
|||.|||+..|.. +++ .+.++.|..+. +.+++|++++|+||+|.||+|++|.++|++..+|+ +|+
T Consensus 223 DnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pA 302 (829)
T 3pff_A 223 ATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELA 302 (829)
T ss_dssp GGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCTTTBC
T ss_pred cchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHcCCCCCCc
Confidence 9999999876654 333 45677776553 25799999999999999999999999999999999 699
Q ss_pred CeeeccCCCCHHHHHHH----HHHHHcCCCccEEEEEccCCCCChHHHH---HHHHHHHHhc-----CCCCcEEEEeCCC
Q 014588 320 NFLDVGGNASEGQVVEA----FKILTSDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQV-----ALKVPVVVRLEGT 387 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~a----l~~ll~d~~vd~ilv~i~~~~~~~~~~a---~~i~~~~~~~-----~~~kpivv~~~g~ 387 (422)
||+|++|+++.++++++ |+++++||+++++|||++|++++||.+| ++|++++++. +.++|||+++.|+
T Consensus 303 NFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~Gt 382 (829)
T 3pff_A 303 NYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGP 382 (829)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBST
T ss_pred eeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCC
Confidence 99999999999987655 9999999999999999999999999999 9999999875 3589999999999
Q ss_pred CHHHHHHHHHHcC----CCcccccCHHHHHHHHHHH
Q 014588 388 NVDQGKRILKESG----MTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 388 ~~~~~~~~L~~~G----ip~~vf~~~e~Av~al~~~ 419 (422)
+.++++++|++.| +||++|. +|--+.+++.+
T Consensus 383 N~eeg~~il~~~g~~lgl~i~v~g-~e~~mt~iv~~ 417 (829)
T 3pff_A 383 NYQEGLRVMGEVGKTTGIPIHVFG-TETHMTAIVGM 417 (829)
T ss_dssp THHHHHHHHHHHHHHHCCCEEEEC-TTSCTTHHHHH
T ss_pred CHHHHHHHHHhCccccCCcEEEeC-CcccHHHHHHH
Confidence 9999999999986 9999987 33334444443
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.3e-35 Score=276.10 Aligned_cols=209 Identities=18% Similarity=0.239 Sum_probs=178.2
Q ss_pred hhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeec-cCCCCCCCccCCCcceEEE-C-C
Q 014588 24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQIL-AGGRGLGTFKSGLKGGVHI-V-K 100 (422)
Q Consensus 24 ~~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~-~g~rgk~~~~s~~~GGV~l-~-~ 100 (422)
+.+++.|+|+++|++|++||||+|++.++++.+|+.++++++ | ||||+||+.. .+||++ .|||.+ . |
T Consensus 14 ~~~~~~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~l--g-~PvvvKp~~~~~~~r~~-------~gGv~~~v~~ 83 (238)
T 1wr2_A 14 KQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEI--G-YPVVLKLMSPQILHKSD-------AKVVMLNIKN 83 (238)
T ss_dssp HTTCCEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHH--C-SSEEEEEECTTCCCHHH-------HTCEEEEECS
T ss_pred hcCcCCCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHh--C-CCEEEEEccCCCCcCCc-------cCCEEEeCCC
Confidence 346789999999999999999999999999999999999999 8 8999999875 455555 499999 4 9
Q ss_pred HHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeeccCCCceeeeccccCCCeEE
Q 014588 101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180 (422)
Q Consensus 101 ~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d~~~d~~~ 180 (422)
+++++++++++++.... + ..+....+++||+|++++.|+++++..|+.| ||++++| .||+++|.+.+ ...
T Consensus 84 ~~el~~a~~~~~~~~~~---~-~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~-g~v~~~~-~Gg~~iE~~~d----~~~ 153 (238)
T 1wr2_A 84 EEELKKKWEEIHENAKK---Y-RPDAEILGVLVAPMLKPGREVIIGVTEDPQF-GHAIMFG-LGGIFVEILKD----VTF 153 (238)
T ss_dssp HHHHHHHHHHHHHHHHH---H-CTTCCCCEEEEEECCCCCEEEEEEEEEETTT-EEEEEEE-ECSTTHHHHCC----CEE
T ss_pred HHHHHHHHHHHHHhhhh---h-CCCCccceEEEEECCCCCeEEEEEEEeCCCC-CcEEEEe-cCCceeeeecc----eee
Confidence 99999999999876421 1 2244457999999999899999999999988 9999999 99999998764 333
Q ss_pred EEecCCCCCCCHHHHHHHHHhC-------CCCc---ccHHHHHHHHHHHHHHhhcCC--CcEEeeeeeEEecCC-cEEEE
Q 014588 181 KVPIDVFNGITDEDAAKVVDGL-------APKV---ADRNDAIEQVKKLYKLFCESD--CTLLEINPLAETSGK-QLVAA 247 (422)
Q Consensus 181 ~~~i~p~~~l~~~~a~~l~~~l-------g~~~---~d~~~l~~~l~~l~~l~~~~~--~~~lEiNPl~v~~~g-~~~al 247 (422)
.++| ++++.+++|.+.+ |+++ .|++++++++.+||+++.+.+ +.++|||||+++++| +++|+
T Consensus 154 --~~~P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~al 228 (238)
T 1wr2_A 154 --RLVP---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIV 228 (238)
T ss_dssp --EESS---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEEC
T ss_pred --ecCC---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEE
Confidence 3456 6899999998877 6654 899999999999999999886 889999999999885 59999
Q ss_pred eeEEeeCCCc
Q 014588 248 DAKLNFDDNA 257 (422)
Q Consensus 248 Da~i~ld~~a 257 (422)
||++.+++|.
T Consensus 229 Da~~~~~~~~ 238 (238)
T 1wr2_A 229 DSRIILKPKD 238 (238)
T ss_dssp CEEEEECCC-
T ss_pred EEEEEeCCCC
Confidence 9999999873
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.90 E-value=3.8e-23 Score=213.49 Aligned_cols=258 Identities=17% Similarity=0.212 Sum_probs=176.6
Q ss_pred EEEEEEecCCCCCceeeeccCCCceeeeccc--cCCC-eEEEEecCCCCCCCHHHHHHHHHhC-C-------CCc-ccHH
Q 014588 143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE--KYPN-MIVKVPIDVFNGITDEDAAKVVDGL-A-------PKV-ADRN 210 (422)
Q Consensus 143 l~vgv~~D~~f~gpvi~~g~~GGi~iE~~~d--~~~d-~~~~~~i~p~~~l~~~~a~~l~~~l-g-------~~~-~d~~ 210 (422)
+.+++.-...+ |++=+++..|+...|.+.. ...- ....+.+--..+++..+..+.+..= . .++ .|-.
T Consensus 139 ~~~~~~~~~~~-G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~ 217 (457)
T 2csu_A 139 LNATFITVAKK-GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGK 217 (457)
T ss_dssp EEEESSCCCEE-CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCCSCHH
T ss_pred ceeeecCCCCC-CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEEecCCCHH
Confidence 44554433334 8899999777776666421 0000 0011122222234555444443321 0 122 3455
Q ss_pred HHHHHHHHHHHHhhcCCCcEEeeeeeEEecCCcEEEEeeEEee--------CC---CccccchhhcccCCCCCCCHHHHH
Q 014588 211 DAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNF--------DD---NAAFRQKEIFALRDPTQEDPREVA 279 (422)
Q Consensus 211 ~l~~~l~~l~~l~~~~~~~~lEiNPl~v~~~g~~~alDa~i~l--------d~---~a~~r~~~~~~~~~~~~~~~~e~~ 279 (422)
.+.+.+.++. ..+ |+++...|+ .+.-.+... ++ ++.|||+|+.+.++ +.|+.
T Consensus 218 ~f~~~a~~~~---~~K--------PVv~~k~G~-~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~v~~-----~~El~ 280 (457)
T 2csu_A 218 KFMEVAKRVT---KKK--------PIIALKAGK-SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANT-----IDEML 280 (457)
T ss_dssp HHHHHHHHHH---HHS--------CEEEEECC-------------------CHHHHHHHHHHTTCEEESS-----HHHHH
T ss_pred HHHHHHHHhc---CCC--------CEEEEEcCC-CccccchhhcccCccCCcHHHHHHHHHhCCCeEECC-----HHHHH
Confidence 6666665552 222 777766663 221222111 11 46899999988766 56777
Q ss_pred HhhcCCceecC--CCeEEEEEcCccHHHHHHHHHHHCCCC---------------------CCCeeeccCCCCHHHHHHH
Q 014588 280 AAKADLNYIGL--DGEIGCMVNGAGLAMATMDIIKLHGGT---------------------PANFLDVGGNASEGQVVEA 336 (422)
Q Consensus 280 a~~~~~~~~~~--~g~vaiitngGG~gv~~~D~l~~~G~~---------------------~~NPlDl~g~~~~~~~~~a 336 (422)
+....+.+ ++ .+||+|||||||+|++++|++..+|++ ++||+|++|+++++.|.++
T Consensus 281 ~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~a 359 (457)
T 2csu_A 281 SMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRT 359 (457)
T ss_dssp HHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHH
T ss_pred HHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHH
Confidence 77777888 66 459999999999999999999999985 6899999999999999999
Q ss_pred HHHHHcCCCccEEEEEccCC-C--CChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHH
Q 014588 337 FKILTSDEKVKAILVNIFGG-I--MKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDA 412 (422)
Q Consensus 337 l~~ll~d~~vd~ilv~i~~~-~--~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~A 412 (422)
++++++||++|+||+++..+ . ..|+.+++.++++.++...+||++++ ++|++.++.+++|+++|+| +|++|++|
T Consensus 360 l~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~~~~~~~L~~~Gip--~~~spe~A 437 (457)
T 2csu_A 360 AKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIP--TYERPEDV 437 (457)
T ss_dssp HHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCC--EESSHHHH
T ss_pred HHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcchHHHHHHHHhCCCC--ccCCHHHH
Confidence 99999999999999976322 2 33677888888887764357999985 7777678889999999999 99999999
Q ss_pred HHHHHHHhh
Q 014588 413 AEKAVKAIA 421 (422)
Q Consensus 413 v~al~~~~~ 421 (422)
++++.++++
T Consensus 438 v~al~~l~~ 446 (457)
T 2csu_A 438 ASAAYALVE 446 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 8
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=99.75 E-value=5.4e-18 Score=174.70 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=123.8
Q ss_pred eeeEEecCCcEEEEeeEEeeCCCccccchhhcccCCCCCCCHHHHHHhhcCCcee--------cCCC-eEEEEEcCccHH
Q 014588 234 NPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYI--------GLDG-EIGCMVNGAGLA 304 (422)
Q Consensus 234 NPl~v~~~g~~~alDa~i~ld~~a~~r~~~~~~~~~~~~~~~~e~~a~~~~~~~~--------~~~g-~vaiitngGG~g 304 (422)
-|+++...|+ ..+.|||.|+++.++.+| +.....-+... .++| ||+|+|||||+|
T Consensus 199 KPVV~~k~Gr-----------s~~g~r~~Gvirv~~~~e-----l~~~a~~l~~~~~~~~~qp~~~G~rvaivtn~Gg~g 262 (480)
T 3dmy_A 199 KPTVALFLGY-----------TPAVARDENVWFASSLDE-----AARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLA 262 (480)
T ss_dssp SCEEEEETTC-----------CCSSSEETTEEEESSHHH-----HHHHHHHHHHHHHHHHHHCCCSCCEEEEEESCHHHH
T ss_pred CCEEEEEeCC-----------CCcccccCCEEEECCHHH-----HHHHHHHHhcCccccccCCCCCCCeEEEEECCHHHH
Confidence 3888876662 233399999999988443 33222222221 2455 999999999999
Q ss_pred HHHHHHHHHCCCC-----------------------------CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEE-c-
Q 014588 305 MATMDIIKLHGGT-----------------------------PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN-I- 353 (422)
Q Consensus 305 v~~~D~l~~~G~~-----------------------------~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~-i- 353 (422)
++++|++.+ |+. .+||+|++ +++.|.++++.+++||++|++++. +
T Consensus 263 vlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l~D~~vd~vlv~~v~ 338 (480)
T 3dmy_A 263 AEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLGAKPQVRVLLLDVVI 338 (480)
T ss_dssp HHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGGGCTTEEEEEEEEEC
T ss_pred HHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHhcCCCCCEEEEEeec
Confidence 999999998 541 36999998 778999999999999999999983 2
Q ss_pred -cCCCCCh-HHHHHHHHHHHHhcCCCCcE-EEE-eCCCC-H----HHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 354 -FGGIMKC-DVIASGIVNAAKQVALKVPV-VVR-LEGTN-V----DQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 354 -~~~~~~~-~~~a~~i~~~~~~~~~~kpi-vv~-~~g~~-~----~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
+++..+. ..+++.|+++.+....+||+ +++ ++|.. . .+.++.|+++||| +|++|++|++++..+.+
T Consensus 339 ~~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~~~~~~~~~~~L~~aGIp--~f~spe~Av~a~~~l~~ 413 (480)
T 3dmy_A 339 GFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIA--VVSSLPEATLLAAALIH 413 (480)
T ss_dssp STTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTSTTCHHHHHHHHHHTTCE--ECSSHHHHHHHHHHHTS
T ss_pred CCCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCcccchhhHHHHHHHHHhCCCc--ccCCHHHHHHHHHHHHh
Confidence 3444454 88999999987762226894 554 55542 2 3356899999999 99999999999999875
No 9
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.24 E-value=5.2e-11 Score=118.83 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=84.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
+..-+++..|++|+++|||+|++..+++.+|+.++++++ | ||+|+||.... ..| .||.+. |++++.
T Consensus 92 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~~~~-~~g---------~Gv~~v~~~~el~ 158 (369)
T 3aw8_A 92 EVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRV--G-LPALLKTRRGG-YDG---------KGQALVRTEEEAL 158 (369)
T ss_dssp HHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTT--C-SSEEEEECCC----------------EEEECSHHHHH
T ss_pred HHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHc--C-CCEEEEEcCCC-CCc---------ceEEEECCHHHHH
Confidence 345789999999999999999999999999999999999 8 89999997532 013 368888 999998
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++++. ...++||+|++.|.|+.+.+..|+. |.++.++
T Consensus 159 ~~~~~~~---------------~~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~ 197 (369)
T 3aw8_A 159 EALKALG---------------GRGLILEGFVPFDREVSLLAVRGRT--GEVAFYP 197 (369)
T ss_dssp HHHTTTC---------------SSSEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred HHHHhcC---------------CCcEEEEEcCCCCEEEEEEEEECCC--CCEEEEC
Confidence 8876541 1479999999988999999999974 5666665
No 10
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.20 E-value=3.4e-10 Score=116.16 Aligned_cols=103 Identities=27% Similarity=0.263 Sum_probs=85.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-++..+|++|+++|||+|++..+++.+|+.++++++ + ||+|+||....+ || ||.+. |.+++.+
T Consensus 120 ~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~--g-~PvVvKp~~~~g--g~---------GV~iv~~~eel~~ 185 (442)
T 3lp8_A 120 LESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKH--K-LPLVVKADGLAQ--GK---------GTVICHTHEEAYN 185 (442)
T ss_dssp HHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHS--C-SSEEEEESSCCT--TT---------SEEEESSHHHHHH
T ss_pred HhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHc--C-CcEEEeECCCCC--CC---------eEEEeCCHHHHHH
Confidence 45688899999999999999999999999999999999 8 899999975432 33 58888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++++++... ..|.....++||||++ |.|+.+.+..|..
T Consensus 186 a~~~~~~~~-------~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 186 AVDAMLVHH-------KFGEAGCAIIIEEFLE-GKEISFFTLVDGS 223 (442)
T ss_dssp HHHHHHTSC-------TTGGGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHHHHhhc-------ccCCCCCeEEEEEeec-CcEEEEEEEECCC
Confidence 999987532 1122235799999999 8999999998854
No 11
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.17 E-value=1.7e-10 Score=117.07 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=81.8
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeC--CHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVA--SVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~--s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee 103 (422)
+...+++..|++|+++|||+|++..++ +.+|+.++++++ | ||+|+||... ++.|| ||.+. |+++
T Consensus 119 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~--g-~P~VvKp~~g-g~~g~---------Gv~~v~~~~e 185 (403)
T 3k5i_A 119 RTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQL--G-YPLMLKSKTM-AYDGR---------GNFRVNSQDD 185 (403)
T ss_dssp HHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHH--C-SSEEEEESSS-CCTTT---------TEEEECSTTS
T ss_pred HHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHh--C-CCEEEEeCCC-CcCCC---------CEEEECCHHH
Confidence 345788999999999999999999999 999999999999 8 8999999642 11344 58888 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 104 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+.++++.+. -..++||+|++++.|+.+.+.+|..
T Consensus 186 l~~a~~~~~---------------~~~~lvEe~i~~~~E~sv~v~~~~~ 219 (403)
T 3k5i_A 186 IPEALEALK---------------DRPLYAEKWAYFKMELAVIVVKTKD 219 (403)
T ss_dssp HHHHHHHTT---------------TSCEEEEECCCEEEEEEEEEEECSS
T ss_pred HHHHHHhcC---------------CCcEEEecCCCCCeEEEEEEEEcCC
Confidence 998887641 1379999999988999999999864
No 12
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.15 E-value=4.4e-10 Score=109.88 Aligned_cols=105 Identities=15% Similarity=0.085 Sum_probs=82.8
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH----hHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAI----QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a----~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
...+++..|++|+++|||+|++.++++.+++.+++ +.+ | ||+|+||.... .+ -||.+. |++
T Consensus 104 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~--g-~PvvvKP~~~~--~s---------~Gv~~v~~~~ 169 (317)
T 4eg0_A 104 LGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKL--G-LPLFVKPASEG--SS---------VAVLKVKTAD 169 (317)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHHHH--C-SCEEEEECC----------------CCEEECSGG
T ss_pred HHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHHhc--C-CCEEEEeCCCC--CC---------CCEEEECCHH
Confidence 34688999999999999999999999988887777 888 8 89999997532 22 356677 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++.+++++.... ...++||+|++.|.|+.+++..|.. +|++.+.
T Consensus 170 el~~a~~~~~~~-------------~~~~lvEe~i~~G~E~~v~vl~~~~--~~~~~i~ 213 (317)
T 4eg0_A 170 ALPAALSEAATH-------------DKIVIVEKSIEGGGEYTACIAGDLD--LPLIKIV 213 (317)
T ss_dssp GHHHHHHHHTTT-------------CSEEEEEECCCSSEEEEEEEETTCC--CCCEEEE
T ss_pred HHHHHHHHHHhC-------------CCeEEEEcCCCCCcEEEEEEECCcc--cceEEEe
Confidence 999998876422 2489999999878999999998864 4666655
No 13
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.15 E-value=6.4e-10 Score=112.19 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHH----HHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVD----EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~----ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee 103 (422)
..++..+|++|+++|||+|++..+++.+ ++.++++.+ | ||+|+||... +.+ -||.+. |+++
T Consensus 157 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~~g--gss---------~Gv~~v~~~~e 222 (386)
T 3e5n_A 157 AMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQL--G-LPLFVKPANQ--GSS---------VGVSQVRTADA 222 (386)
T ss_dssp HHBHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHH--C-SSEEEEESBS--CSS---------TTCEEECSGGG
T ss_pred HhCHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHHHHHhc--C-CCEEEEECCC--CcC---------CCEEEECCHHH
Confidence 4578899999999999999999999888 788888999 8 8999999753 223 257777 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 104 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+.++++.++.. ...++||+|++ |+|+.+++..|.. ++++..+
T Consensus 223 l~~a~~~a~~~-------------~~~vlVEe~I~-G~E~~v~vl~~~~--~~~~~~g 264 (386)
T 3e5n_A 223 FAAALALALAY-------------DHKVLVEAAVA-GREIECAVLGNAV--PHASVCG 264 (386)
T ss_dssp HHHHHHHHTTT-------------CSEEEEEECCC-SEEEEEEEECSSS--CEEEEEE
T ss_pred HHHHHHHHHhC-------------CCcEEEEcCCC-CeEEEEEEEeCCC--ceEEEeE
Confidence 99999887532 14799999999 7999999998865 3555444
No 14
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.13 E-value=4.4e-10 Score=115.16 Aligned_cols=110 Identities=18% Similarity=0.301 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
.-+++..|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||.. ++.| .||.+. |++++.
T Consensus 117 ~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~--g-~PvvvKp~~--g~gg---------~Gv~~v~~~~el~ 182 (446)
T 3ouz_A 117 MSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEI--G-YPVILKAAA--GGGG---------RGMRVVENEKDLE 182 (446)
T ss_dssp HHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHH--C-SSEEEEETT--CCTT---------CSEEEECSGGGHH
T ss_pred hCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHh--C-CCEEEEECC--CCCC---------CCEEEECCHHHHH
Confidence 4578899999999999999997 889999999999999 8 899999964 2223 368888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++.+...... ..+ ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 183 ~~~~~~~~~~~~-----~~~--~~~~lvEe~i~g~~e~~v~v~~d~~--g~~~~~~ 229 (446)
T 3ouz_A 183 KAYWSAESEAMT-----AFG--DGTMYMEKYIQNPRHIEVQVIGDSF--GNVIHVG 229 (446)
T ss_dssp HHHHHHHHHHHH-----HHS--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEEE
T ss_pred HHHHHHHHHHHH-----hcC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence 999987654310 001 1479999999966999999999974 6777765
No 15
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=9.9e-12 Score=101.77 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..+++.+|++|+++|||+|++. .+++.+|+.++++.+ | ||+|+||... +.|+ ||.+. |++++.
T Consensus 6 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--~-~P~vvKp~~~--~~~~---------gv~~v~~~~el~ 71 (108)
T 2cqy_A 6 SGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREI--G-YPVMIKASAG--GGGK---------GMRIAWDDEETR 71 (108)
T ss_dssp CCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHH--C-SSEEEEETTS--CCTT---------TCEEESSHHHHH
T ss_pred hcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhc--C-CCEEEEECCC--CCCc---------cEEEeCCHHHHH
Confidence 3455678889999999999998 899999999999999 8 8999999742 2233 57777 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEE
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv 147 (422)
++++++..... .. .+ ..+++||+|+++..|+.+++
T Consensus 72 ~~~~~~~~~~~--~~---~~--~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 72 DGFRLSSQEAA--SS---FG--DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp HHHHHHHHHHH--HH---TS--SCCEEEEECCSSSSCCCSCC
T ss_pred HHHHHHHHHHH--hh---cC--CCcEEEeeccCCCcEEEEEe
Confidence 99998875321 00 01 14799999999667987764
No 16
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.11 E-value=4.1e-10 Score=114.84 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=84.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhH----hCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD----AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~----l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ 101 (422)
+..-+++..|++|+++|||+|++..+++.+|+.+++++ + ||+|+||.. .|+.|| ||.+. |+
T Consensus 129 ~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~~~----~P~VvKp~~-~g~~G~---------Gv~~v~~~ 194 (419)
T 4e4t_A 129 AVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAV----LPGILKTAR-LGYDGK---------GQVRVSTA 194 (419)
T ss_dssp HHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHHTT----CSEEEEESS-SCCTTT---------TEEEECSH
T ss_pred HHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcccc----CCEEEEecC-CCCCCC---------ceEEECCH
Confidence 34578899999999999999999999999999888877 6 699999951 233344 58888 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 102 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++.++++.+. -..++||+|++++.|+.+.+.+|.. |.++.+.
T Consensus 195 ~el~~a~~~~~---------------~~~~lvEe~i~~~~Eisv~v~~~~~--G~~~~~~ 237 (419)
T 4e4t_A 195 REARDAHAALG---------------GVPCVLEKRLPLKYEVSALIARGAD--GRSAAFP 237 (419)
T ss_dssp HHHHHHHHHTT---------------TCCEEEEECCCEEEEEEEEEEECTT--SCEEECC
T ss_pred HHHHHHHHhcC---------------CCcEEEeecCCCCeEEEEEEEEcCC--CCEEEEe
Confidence 99999887641 1369999999988999999999875 5566655
No 17
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.10 E-value=4.1e-10 Score=127.31 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
.-+++..|++|+++|||+|++..+++.+|+.++++++ | ||+|+||....| |+ ||.+. |++++.++
T Consensus 126 ~~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~~~~~i--g-~PvVvKp~~~~G--g~---------Gv~iv~~~eel~~~ 191 (1073)
T 1a9x_A 126 AEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADV--G-FPCIIRPSFTMG--GS---------GGGIAYNREEFEEI 191 (1073)
T ss_dssp HHSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHH--C-SSEEEEETTCCT--TT---------TCEEESSHHHHHHH
T ss_pred hhCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHc--C-CCEEEEECCCCC--CC---------ceEEeCCHHHHHHH
Confidence 3578899999999999999999999999999999999 8 899999975433 22 46677 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++.+... . ...++||+|+++.+|+.+.+.+|.. |.++.++
T Consensus 192 ~~~~~~~~-------~----~~~vlvEe~I~G~~E~~v~v~~d~~--g~~v~~~ 232 (1073)
T 1a9x_A 192 CARGLDLS-------P----TKELLIDESLIGWKEYEMEVVRDKN--DNCIIVC 232 (1073)
T ss_dssp HHHHHHHC-------T----TSCEEEEECCTTSEEEEEEEEECTT--CCEEEEE
T ss_pred HHHHHhhC-------C----CCcEEEEEccCCCeEEEEEEEEeCC--CCEEEEE
Confidence 98876542 1 2479999999976899999999964 5666655
No 18
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.09 E-value=1.3e-09 Score=115.25 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCeee-----------------------------eCCHHHHHHHHhHhCCCCCeEEEEEeec
Q 014588 29 NIHEYQGAELMAKYGINVPKGLA-----------------------------VASVDEVKKAIQDAFPDHKELVVKSQIL 79 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~-----------------------------~~s~~ea~~~a~~l~~g~~PvVlK~~~~ 79 (422)
.-++..+|++|+++|||+|++.. +++.+|+.++++++ | ||||+||..
T Consensus 178 ~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~i--G-yPvVVKp~~- 253 (587)
T 3jrx_A 178 LGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERI--G-FPLMIKASE- 253 (587)
T ss_dssp HCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHH--C-SSEEEEETT-
T ss_pred hCCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhc--C-CeEEEEeCC-
Confidence 35789999999999999999987 88999999999999 9 899999964
Q ss_pred cCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCcee
Q 014588 80 AGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII 158 (422)
Q Consensus 80 ~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi 158 (422)
|+-|| ||.+. |++++.++++.+.... . ...++||+|+++.+|+.+.+..|.. |.++
T Consensus 254 -GgGGk---------Gv~iV~s~eEL~~a~~~a~~~~-------~----~~~vlVEeyI~g~rei~V~vl~D~~--G~vv 310 (587)
T 3jrx_A 254 -GGGGK---------GIRKAESAEDFPILFRQVQSEI-------P----GSPIFLMKLAQHARHLEVQILADQY--GNAV 310 (587)
T ss_dssp -CCSSS---------SEEEECSTTTHHHHHHHHHHHS-------T----TCCEEEEECCCSCEEEEEEEEECSS--SCEE
T ss_pred -CCCCC---------CeEEeCCHHHHHHHHHHHHhhc-------c----CCCEEEEEecCCCcEEEEEEEEcCC--CCEE
Confidence 32233 58888 9999999999876543 1 2479999999966999999999974 6777
Q ss_pred eec
Q 014588 159 IGC 161 (422)
Q Consensus 159 ~~g 161 (422)
.++
T Consensus 311 ~l~ 313 (587)
T 3jrx_A 311 SLF 313 (587)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 19
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.05 E-value=8.1e-09 Score=103.80 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=85.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
+...+++..|++|+++|||+|++..+++.+|+.++++++ | ||+|+||... ++.|+ ||.+. |++++.
T Consensus 108 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~~~-~~~g~---------Gv~~v~~~~el~ 174 (389)
T 3q2o_A 108 SKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAEL--S-YPSVLKTTTG-GYDGK---------GQVVLRSEADVD 174 (389)
T ss_dssp HHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--C-SSEEEEESSC-CSSSC---------CEEEESSGGGHH
T ss_pred HHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhc--C-CCEEEEeCCC-CCCCC---------CeEEECCHHHHH
Confidence 456789999999999999999999999999999999999 8 8999999642 11233 57778 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++.+. -..++||+|++++.|+.+.+.+|.. |-+..++
T Consensus 175 ~~~~~~~---------------~~~~lvEe~i~g~~E~~v~~~~~~~--G~~~~~~ 213 (389)
T 3q2o_A 175 EARKLAN---------------AAECILEKWVPFEKEVSVIVIRSVS--GETKVFP 213 (389)
T ss_dssp HHHHHHH---------------HSCEEEEECCCCSEEEEEEEEECTT--CCEEECC
T ss_pred HHHHhcC---------------CCCEEEEecccCceEEEEEEEEcCC--CCEEEec
Confidence 9887652 1369999999977999999999864 4444444
No 20
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.04 E-value=7.5e-10 Score=113.22 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=87.6
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
...++..+|++|+++|||+|++..+++.+|+.++++.+ + ||+|+||....+ || ||.+. |.+++.+
T Consensus 104 ~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~--g-~PvVvKp~~~~g--g~---------GV~iv~~~~el~~ 169 (431)
T 3mjf_A 104 LEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQK--G-APIVIKADGLAA--GK---------GVIVAMTQEEAET 169 (431)
T ss_dssp HHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHH--C-SSEEEEESSSCT--TC---------SEEEECSHHHHHH
T ss_pred HhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHc--C-CeEEEEECCCCC--CC---------cEEEeCCHHHHHH
Confidence 44688999999999999999999999999999999999 8 899999975432 33 58888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++++....+ |.....++||||++ |.|+.+.+..|.. .++.++
T Consensus 170 a~~~~~~~~~~-------g~~~~~vlvEe~i~-G~E~sv~~~~dg~---~~~~~~ 213 (431)
T 3mjf_A 170 AVNDMLAGNAF-------GDAGHRIVVEEFLD-GEEASFIVMVDGE---NVLPMA 213 (431)
T ss_dssp HHHHHHTTHHH-------HCCCCCEEEEECCC-SEEEEEEEEEESS---CEEECC
T ss_pred HHHHHHhhccc-------cCCCCeEEEEEeeC-CcEEEEEEEEcCC---EEEEEE
Confidence 99998743210 11124899999999 7999999998853 344444
No 21
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.03 E-value=2.6e-09 Score=106.72 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=80.6
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHH----HHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVD----EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~----ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
...+++.+|++|+++|||+|++..+++.+ ++.++++.+ | ||+|+||.. ++.+ .||.+. |++
T Consensus 137 ~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~~--ggss---------~Gv~~v~~~~ 202 (364)
T 3i12_A 137 ACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRL--G-LPLFVKPAN--QGSS---------VGVSKVANEA 202 (364)
T ss_dssp HHHCHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHH--C-SSEEEEETT--CCTT---------TTCEEESSHH
T ss_pred HHHCHHHHHHHHHHCCCCCCCEEEEEccccchhhHHHHHHhc--C-CCEEEEECC--CCCC---------cCeEEeCCHH
Confidence 34689999999999999999999999887 888888999 8 899999974 3323 356777 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++.+++++++... ..++||+|++ |+|+.+++..|..
T Consensus 203 el~~a~~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~~~~ 238 (364)
T 3i12_A 203 QYQQAVALAFEFD-------------HKVVVEQGIK-GREIECAVLGNDN 238 (364)
T ss_dssp HHHHHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHHHHHhcC-------------CcEEEEcCcC-CeEEEEEEEeCCC
Confidence 9999998876432 4799999999 6999999998864
No 22
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.00 E-value=7.7e-09 Score=108.64 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=85.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeee-----------------------------eCCHHHHHHHHhHhCCCCCeEEEEEee
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLA-----------------------------VASVDEVKKAIQDAFPDHKELVVKSQI 78 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~-----------------------------~~s~~ea~~~a~~l~~g~~PvVlK~~~ 78 (422)
..-++..+|++|+++|||+|++.. +++.+|+.++++++ | ||+|+||..
T Consensus 161 ~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~i--g-yPvVVKp~~ 237 (540)
T 3glk_A 161 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERI--G-FPLMIKASE 237 (540)
T ss_dssp ---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHH--C-SSEEEEETT
T ss_pred HhCCHHHHHHHHHHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhc--C-CcEEEEECC
Confidence 445899999999999999999987 88999999999999 9 899999964
Q ss_pred ccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCce
Q 014588 79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI 157 (422)
Q Consensus 79 ~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpv 157 (422)
|+-|| ||.+. |++++.++++.+.... . ...++||+|+++.+|+.+.+..|.. |.+
T Consensus 238 --ggGG~---------Gv~iv~~~~eL~~a~~~~~~~~-------~----~~~vlVEe~I~g~rei~V~vl~d~~--G~v 293 (540)
T 3glk_A 238 --GGGGK---------GIRKAESAEDFPILFRQVQSEI-------P----GSPIFLMKLAQHARHLEVQILADQY--GNA 293 (540)
T ss_dssp --CC-------------EEEECSTTTHHHHHHHHHHHS-------T----TCCEEEEECCSSEEEEEEEEEECTT--SCE
T ss_pred --CCCCC---------CEEEECCHHHHHHHHHHHHhhc-------c----CCCEEEEEecCCCcEEEEEEEEcCC--CCE
Confidence 22233 58888 9999999999876543 1 2479999999966999999999974 677
Q ss_pred eeec
Q 014588 158 IIGC 161 (422)
Q Consensus 158 i~~g 161 (422)
+.++
T Consensus 294 v~l~ 297 (540)
T 3glk_A 294 VSLF 297 (540)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 23
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.98 E-value=9.5e-09 Score=108.31 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=86.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeee--------------------------CCHHHHHHHHhHhCCCCCeEEEEEeecc
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAV--------------------------ASVDEVKKAIQDAFPDHKELVVKSQILA 80 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~--------------------------~s~~ea~~~a~~l~~g~~PvVlK~~~~~ 80 (422)
+..-+++.+|++|+++|||+|++..+ ++.+|+.++++++ | ||+|+||....
T Consensus 169 ~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~--g-~PvVvKp~~g~ 245 (554)
T 1w96_A 169 RSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRI--G-FPVMIKASEGG 245 (554)
T ss_dssp HHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHH--C-SSEEEEETTCC
T ss_pred HHHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHc--C-CCEEEEECCCC
Confidence 34568889999999999999998764 7899999999999 8 89999997533
Q ss_pred CCCCCCCccCCCcceEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceee
Q 014588 81 GGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIII 159 (422)
Q Consensus 81 g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~ 159 (422)
| || ||.+. |++++.++++.+.... . ...++||+|+++++|+.+.+..|.. |.++.
T Consensus 246 g--g~---------Gv~~v~~~~el~~a~~~~~~~~--------~---~~~vlvEe~i~g~~e~sv~vl~d~~--G~vv~ 301 (554)
T 1w96_A 246 G--GK---------GIRQVEREEDFIALYHQAANEI--------P---GSPIFIMKLAGRARHLEVQLLADQY--GTNIS 301 (554)
T ss_dssp T--TT---------TEEEECSHHHHHHHHHHHHHHS--------T---TCCEEEEECCCSCEEEEEEEEECTT--SCEEE
T ss_pred C--Cc---------eEEEECCHHHHHHHHHHHHhhc--------c---CCCEEEEEecCCCcEEEEEEEEcCC--CCEEE
Confidence 2 33 58888 9999999999886542 1 1479999999977999999999863 56654
Q ss_pred e
Q 014588 160 G 160 (422)
Q Consensus 160 ~ 160 (422)
+
T Consensus 302 l 302 (554)
T 1w96_A 302 L 302 (554)
T ss_dssp E
T ss_pred E
Confidence 4
No 24
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.98 E-value=1.4e-09 Score=108.63 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=79.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-C--HHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K--KEEV 104 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~--~ee~ 104 (422)
..-++...|++|+++|||+|++..+++.+|+.++++++ | ||+|+||... |+.|| ||.+. | ++++
T Consensus 76 ~~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~--G-~P~VvKp~~~-G~~Gk---------Gv~~v~~~~~~el 142 (355)
T 3eth_A 76 IIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRL--G-ELAIVKRRTG-GYDGR---------GQWRLRANETEQL 142 (355)
T ss_dssp HHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHH--C-SEEEEEESSS-CCTTT---------TEEEEETTCGGGS
T ss_pred HhcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHHHHc--C-CCEEEEecCC-CCCCC---------eEEEEcCCCHHHH
Confidence 34578889999999999999999999999999999999 9 8999999642 23344 47777 8 8887
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
.+++ . + .++||+|++.++|+.+.+.+|.. |-+..+.
T Consensus 143 ~~a~------~---------~----~vivEe~I~~~~Eisv~v~~~~~--G~~~~~p 178 (355)
T 3eth_A 143 PAEC------Y---------G----ECIVEQGINFSGEVSLVGARGFD--GSTVFYP 178 (355)
T ss_dssp CGGG------T---------T----TEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred HHHh------h---------C----CEEEEEccCCCcEEEEEEEEcCC--CCEEEEC
Confidence 6631 1 2 49999999988999999999865 4554443
No 25
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.92 E-value=1.5e-08 Score=101.64 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=84.5
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCC-CCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~-rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..-+++..|++|+++|||+|++..+++.+|+.++++++ | ||+|+||.. ++ .|| ||.+. |++++.
T Consensus 107 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~~--gg~~g~---------Gv~~v~~~~el~ 172 (377)
T 3orq_A 107 LLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETL--G-YPFIVKTRF--GGYDGK---------GQVLINNEKDLQ 172 (377)
T ss_dssp HHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHT--C-SSEEEEESS--SCCTTT---------TEEEECSTTSHH
T ss_pred HhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHc--C-CCEEEEeCC--CCCCCC---------CeEEECCHHHHH
Confidence 44678899999999999999999999999999999999 8 899999964 22 243 57778 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++.+.. ..++||+|+++..|+.+.+.+|.. |.+..++
T Consensus 173 ~a~~~~~~---------------~~~ivEe~i~g~~E~sv~~~~~~~--g~~~~~~ 211 (377)
T 3orq_A 173 EGFKLIET---------------SECVAEKYLNIKKEVSLTVTRGNN--NQITFFP 211 (377)
T ss_dssp HHHHHHTT---------------SCEEEEECCCEEEEEEEEEEECGG--GCEEECC
T ss_pred HHHHhcCC---------------CcEEEEccCCCCEEEEEEEEEeCC--CCEEEEC
Confidence 98887631 369999999965999999998863 5555554
No 26
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.92 E-value=3.9e-09 Score=109.23 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=81.4
Q ss_pred hcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHH
Q 014588 25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (422)
Q Consensus 25 ~~~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee 103 (422)
.-+...+++.+|++|+++|||+|++..+++.+|+.++++++ | ||+|+||....| |+ ||.+. |+++
T Consensus 133 ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~l--g-~PvVVKP~~g~g--g~---------Gv~iv~~~ee 198 (474)
T 3vmm_A 133 AAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEI--G-TPLILKPTYLAS--SI---------GVTLITDTET 198 (474)
T ss_dssp HHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHS--C-SSEEEEESSCCT--TT---------TCEEECCTTS
T ss_pred HHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHc--C-CCEEEEECCCCc--Cc---------eEEEECCHHH
Confidence 33456789999999999999999999999999999999999 8 899999975322 33 46677 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeecCCCce------------EEE-EEEecCCC
Q 014588 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE------------MYF-AIMLDRKT 153 (422)
Q Consensus 104 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~E------------l~v-gv~~D~~f 153 (422)
+.++++++............. .....++||+|++ |.| +.+ ++..|..+
T Consensus 199 l~~a~~~~~~~~~~~~~~~a~-~~~~~vlVEe~I~-G~e~~~~q~~~~~~e~sv~~v~~dg~~ 259 (474)
T 3vmm_A 199 AEDEFNRVNDYLKSINVPKAV-TFEAPFIAEEFLQ-GEYGDWYQTEGYSDYISIEGIMADGEY 259 (474)
T ss_dssp HHHHHHHHHHHHTTSCCCTTC-CCSCSEEEEECCC-BCHHHHCSSSSSCSEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhhccccccc-cCCCeEEEEeCCC-CceeeeeecccccceeEEEEEEECCeE
Confidence 999998876532100000000 0125899999999 444 655 46666554
No 27
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.91 E-value=7.9e-09 Score=104.82 Aligned_cols=104 Identities=27% Similarity=0.337 Sum_probs=84.1
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
+..-+++..|++|+++|||+|++..+++.+|+.++++++ | ||+|+||....+ | .||.+. |++++.
T Consensus 102 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~~~~~~--g-~PvvvKp~~~~g--g---------~Gv~~v~~~~el~ 167 (412)
T 1vkz_A 102 RLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKF--S-PPYVIKADGLAR--G---------KGVLILDSKEETI 167 (412)
T ss_dssp HHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTS--C-SSEEEEESSCCS--S---------CCEEEESSHHHHH
T ss_pred HHhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHhc--C-CCEEEEeCCCCC--C---------CCEEEECCHHHHH
Confidence 345688899999999999999999999999999999999 8 899999975332 3 368888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+++++++.... ..|. ...++||||++ |.|+.+.+..|..
T Consensus 168 ~a~~~~~~~~~------~~g~-~~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 168 EKGSKLIIGEL------IKGV-KGPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp HHHHHHHHTSS------STTC-CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHHHHhhcc------ccCC-CCeEEEEECCc-CcEEEEEEEECCC
Confidence 99998864310 0121 13799999999 8999999998754
No 28
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.90 E-value=7e-09 Score=103.28 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHH---HHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDE---VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~e---a~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
.+++.+|++|+++|||+|++..+++.++ +.++++++ | ||+|+||.. ++.|+ ||.+. |.+++.
T Consensus 138 ~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~~--gg~s~---------Gv~~v~~~~el~ 203 (357)
T 4fu0_A 138 MDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANL--T-YPLFIKPVR--AGSSF---------GITKVIEKQELD 203 (357)
T ss_dssp HCHHHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHHC--C-SSEEEEETT--CSSST---------TCEEESSHHHHH
T ss_pred hCHHHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHhc--C-CCEEEEECC--CCCCC---------ceEEeccHHhHH
Confidence 6788999999999999999998866433 45667788 8 899999963 33333 57777 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++++..... -..+++|++++ |+|+.+++..|..
T Consensus 204 ~~~~~a~~~-------------~~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 204 AAIELAFEH-------------DTEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp HHHHHHTTT-------------CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHhcc-------------CCeEEEEEecC-CEEEEEEEEecCC
Confidence 988876432 14799999998 8999999998754
No 29
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.89 E-value=3.1e-08 Score=99.79 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHcC-CCCCCeeeeCCH----HHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 29 NIHEYQGAELMAKYG-INVPKGLAVASV----DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 29 ~L~e~~ak~lL~~~G-Ipvp~~~~~~s~----~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
..+++..|++|+++| ||+|++..+++. +++.++++.+ | ||+|+||... +.+ -||.+. |++
T Consensus 159 ~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~~g--gss---------~GV~~v~~~~ 224 (383)
T 3k3p_A 159 AMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKL--I-YPVFVKPANM--GSS---------VGISKAENRT 224 (383)
T ss_dssp HHCHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHC--C-SSEEEEECC-----------------CEEESSHH
T ss_pred HhCHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHHHHHhc--C-CCEEEEeCCC--CCC---------CCEEEECCHH
Confidence 357889999999999 999999999876 5777888898 8 8999999642 222 357777 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++.++++..+... ..++||+|++ |+|+.+++..|.
T Consensus 225 el~~al~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~d~ 259 (383)
T 3k3p_A 225 DLKQAIALALKYD-------------SRVLIEQGVD-AREIEVGILGNT 259 (383)
T ss_dssp HHHHHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHHHHHhCC-------------CeEEEEcCCC-CeEEEEEEEeCC
Confidence 9999998875321 4799999999 899999999874
No 30
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.89 E-value=1e-08 Score=103.92 Aligned_cols=102 Identities=25% Similarity=0.303 Sum_probs=83.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-+++..|++|+++|||+|++..+++.+|+.++++.+ + ||+|+||....+ || ||.+. |++++.+
T Consensus 99 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~P~vvKp~~~~~--g~---------Gv~~v~~~~el~~ 164 (422)
T 2xcl_A 99 IEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEK--G-APIVIKADGLAA--GK---------GVTVAMTEEEAIA 164 (422)
T ss_dssp HHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHH--C-SSEEEEESSCGG--GT---------CEEEESSHHHHHH
T ss_pred HhcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhc--C-CCEEEEeCCCCC--CC---------cEEEECCHHHHHH
Confidence 34588899999999999999999999999999999999 8 899999975332 33 58888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++++++... ..|.....++||||++ |.|+.+.+..|.
T Consensus 165 ~~~~~~~~~-------~~g~~~~~~lvEe~i~-g~E~sv~~~~dG 201 (422)
T 2xcl_A 165 CLHDFLEDE-------KFGDASASVVIEEYLS-GEEFSLMAFVKG 201 (422)
T ss_dssp HHHHHHTSC-------TTGGGGSSEEEEECCC-SEEEEEEEEEET
T ss_pred HHHHHHhhh-------hccCCCCeEEEEECCc-CcEEEEEEEEcC
Confidence 999887532 1122125799999999 899999998874
No 31
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.87 E-value=1.6e-09 Score=116.81 Aligned_cols=111 Identities=13% Similarity=0.193 Sum_probs=39.2
Q ss_pred cCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
..-++..+|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||... +.| .||.+. |++++
T Consensus 112 ~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~i--g-yPvVvKp~~g--ggg---------kGv~iv~~~~el 177 (681)
T 3n6r_A 112 AMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQI--G-YPVMIKASAG--GGG---------KGMRIAWNDQEA 177 (681)
T ss_dssp HTTSHHHHHHHHHTTTCCCCCC----------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhc--C-CcEEEEECCC--CCC---------CCEEEECCHHHH
Confidence 45689999999999999999985 788999999999999 8 8999999743 223 358888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
.++++.+..... ...|. ..++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 178 ~~a~~~~~~ea~-----~~fg~--~~vlvEe~I~g~rei~V~v~~d~~--G~vv~l~ 225 (681)
T 3n6r_A 178 REGFQSSKNEAA-----NSFGD--DRIFIEKFVTQPRHIEIQVLCDSH--GNGIYLG 225 (681)
T ss_dssp --------------------------------CCSCEEEEEEEECCSS--SCCEEEE
T ss_pred HHHHHHHHHHHH-----HhCCC--CcEEEEeccCCCcEEEEEEEEeCC--CCEEEEe
Confidence 999988765431 01122 579999999966999999999974 6777776
No 32
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.87 E-value=1.3e-08 Score=104.36 Aligned_cols=103 Identities=29% Similarity=0.322 Sum_probs=82.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
...+++..|++|+++|||+|++..+++.+|+.++++.+ + ||+|+||....+ || ||.+. |++++.+
T Consensus 120 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~PvVvKp~~~~g--g~---------Gv~~v~~~~el~~ 185 (451)
T 2yrx_A 120 IEGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQK--G-APIVIKADGLAA--GK---------GVTVAQTVEEALA 185 (451)
T ss_dssp HHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHH--C-SSEEEEECC------C---------CEEEESSHHHHHH
T ss_pred HhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhc--C-CcEEEEeCCCCC--CC---------cEEEECCHHHHHH
Confidence 34578889999999999999999999999999999999 8 899999975432 33 58888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++++++... ..|.....++||||++ |.|+.+.+..|..
T Consensus 186 ~~~~~~~~~-------~~g~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 186 AAKAALVDG-------QFGTAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp HHHHHHHHS-------CCBTTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHHHhcc-------ccCCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 999886532 0121125799999999 8999999988743
No 33
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.87 E-value=1.5e-08 Score=102.72 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
.-+++..|++|+++|||+|++..+++.+|+.++++++ + ||+|+||....+ || ||.+. |++++.++
T Consensus 100 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~ 165 (424)
T 2yw2_A 100 EGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKV--G-APIVVKADGLAA--GK---------GAVVCETVEKAIET 165 (424)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHH--C-SSEEEEESSCCT--TC---------SEEEESSHHHHHHH
T ss_pred HhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHc--C-CcEEEEeCCCCC--CC---------CEEEECCHHHHHHH
Confidence 3588899999999999999999999999999999999 8 899999965332 33 58888 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++++... ..|.....++||||++ |.|+.+.+..|.
T Consensus 166 ~~~~~~~~-------~~g~~~~~~lvEe~i~-g~E~sv~~~~~G 201 (424)
T 2yw2_A 166 LDRFLNKK-------IFGKSSERVVIEEFLE-GEEASYIVMING 201 (424)
T ss_dssp HHHHHTSC-------TTGGGGSSEEEEECCC-SEEEEEEEEEET
T ss_pred HHHHHhhh-------hccCCCCeEEEEECCC-CcEEEEEEEEcC
Confidence 99887532 1122125799999999 899999998864
No 34
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.84 E-value=1.8e-08 Score=103.11 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
.-+++..|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||....+ |+ ||.+. |.+++.
T Consensus 112 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--g-~PvvvKp~~g~g--g~---------Gv~~v~~~~el~ 177 (451)
T 1ulz_A 112 MGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREI--G-YPVLLKATAGGG--GR---------GIRICRNEEELV 177 (451)
T ss_dssp HHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHH--C-SSEEEEECSSSS--CC---------SCEEESSHHHHH
T ss_pred hcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHc--C-CCEEEEECCCCC--Cc---------cEEEeCCHHHHH
Confidence 3578889999999999999998 889999999999999 8 899999975332 33 57778 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++++..... . ..|. ..++||+|++++.|+.+.+..|.. |.++.++
T Consensus 178 ~~~~~~~~~~~---~--~~~~--~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~~ 224 (451)
T 1ulz_A 178 KNYEQASREAE---K--AFGR--GDLLLEKFIENPKHIEYQVLGDKH--GNVIHLG 224 (451)
T ss_dssp HHHHHHHHHHH---H--TTSC--CCEEEEECCCSCEEEEEEEEECTT--SCEEEEE
T ss_pred HHHHHHHHHHH---H--hcCC--CeEEEEEcccCCeEEEEEEEEcCC--CCEEEEe
Confidence 99988765320 0 1121 479999999976899999999863 5666554
No 35
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.84 E-value=4.8e-08 Score=97.97 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHH----HHHHHhHhCCCCCe-EEEEEeeccCCCCCCCccCCCcceEEEC-CHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE 102 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~e----a~~~a~~l~~g~~P-vVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~e 102 (422)
..+++.+|++|+++|||+|++..+++.++ +..+.+.+ | || +|+||.. ++.+ -||.+. |.+
T Consensus 138 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~l--g-~P~vvVKP~~--ggss---------~Gv~~v~~~~ 203 (372)
T 3tqt_A 138 CMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRW--G-TSELFVKAVS--LGSS---------VATLPVKTET 203 (372)
T ss_dssp HHSHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHHHHHHHC------CEEEEESS--CCSG---------GGEEEECSHH
T ss_pred HhCHHHHHHHHHHCCcCCCCEEEEechhhhhhHHHHHHHhc--C-CCeEEEEECC--CCCC---------CCEEEECCHH
Confidence 46788999999999999999999987664 45677788 8 89 9999964 2223 468888 999
Q ss_pred HHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 103 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++.+++++.+.. -..++||+|++ |+|+.+++..|.
T Consensus 204 eL~~a~~~a~~~-------------~~~vlVEe~I~-G~E~~v~vl~~~ 238 (372)
T 3tqt_A 204 EFTKAVKEVFRY-------------DDRLMVEPRIR-GREIECAVLGNG 238 (372)
T ss_dssp HHHHHHHHHTTT-------------CSCEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHHHHHhc-------------CCCEEEECCCC-CEEEEEEEEeCC
Confidence 999998876432 14799999999 899999999886
No 36
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.83 E-value=4e-09 Score=104.84 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=53.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeecc-CCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILA-GGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~-g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..-+++..|++|+++|||+|++..++ .+|+.++++++ + ||+|+||.... + |+ ||.+. |.+++.
T Consensus 89 ~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~~~~--~-~P~vvKp~~~~~~--g~---------Gv~~v~~~~el~ 153 (365)
T 2z04_A 89 VKKSRIREKLFLKKHGFPVPEFLVIK-RDEIIDALKSF--K-LPVVIKAEKLGYD--GK---------GQYRIKKLEDAN 153 (365)
T ss_dssp HHTCHHHHHHHHHTTTCCCCCEEEC------------------CEEEECC------------------------------
T ss_pred HhhCHHHHHHHHHHcCCCCCCEEEEc-HHHHHHHHHhc--C-CCEEEEEcCCCcC--CC---------CeEEECCHHHHH
Confidence 45789999999999999999999998 89998888888 8 89999997532 2 33 57778 999998
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+++++++.. ..++||+|++.|.|+.+.+..|.. |.++.++
T Consensus 154 ~~~~~~~~~--------------~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~ 193 (365)
T 2z04_A 154 QVVKNHDKE--------------ESFIIEEFVKFEAEISCIGVRDRE--GKTYFYP 193 (365)
T ss_dssp -------------------------CEEEECCCCSEEEEEEEEECTT--CCEEECC
T ss_pred HHHHHhccC--------------CCEEEEccCCCCEEEEEEEEECCC--CCEEEEC
Confidence 888776421 379999999988999999999864 5666555
No 37
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.82 E-value=2.7e-08 Score=112.49 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~ 108 (422)
-+++..+++|+++|||+|++..+++.+|+.++++++ | ||+|+||....| | -||.+. |++++.+++
T Consensus 673 ~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~~~~~i--g-~PvvVKP~~~~g--G---------~Gv~iv~~~~el~~~~ 738 (1073)
T 1a9x_A 673 EDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEI--G-YPLVVRASYVLG--G---------RAMEIVYDEADLRRYF 738 (1073)
T ss_dssp HSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHH--C-SSEEEEC------------------CEEEECSHHHHHHHH
T ss_pred hCHHHHHHHHHHcCcCCCCceEECCHHHHHHHHHHc--C-CCEEEEECCCCC--C---------CCeEEECCHHHHHHHH
Confidence 567888999999999999999999999999999999 8 899999975433 2 258888 999999998
Q ss_pred HHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 109 ~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+++.... + ...++||+|+++..|+.+.+..|..
T Consensus 739 ~~a~~~~---------~--~~~vlvEefI~g~~E~~V~~l~d~~ 771 (1073)
T 1a9x_A 739 QTAVSVS---------N--DAPVLLDHFLDDAVEVDVDAICDGE 771 (1073)
T ss_dssp HHCC-------------------EEEBCCTTCEEEEEEEEECSS
T ss_pred HHHHhhC---------C--CCcEEEEEccCCCcEEEEEEEEECC
Confidence 8765321 1 2479999999966699999999863
No 38
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.81 E-value=2.5e-08 Score=102.00 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
.-+++..|++|+++|||+|++. .+++.+|+.++++.+ | ||+|+||....+ |+ ||.+. |++++.
T Consensus 112 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~--g-~PvvvKp~~g~g--g~---------Gv~~v~~~~el~ 177 (451)
T 2vpq_A 112 MGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKI--G-YPVIIKATAGGG--GK---------GIRVARDEKELE 177 (451)
T ss_dssp HHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHH--C-SSEEEEETTCCT--TC---------SEEEESSHHHHH
T ss_pred hcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhc--C-CcEEEEECCCCC--CC---------CEEEeCCHHHHH
Confidence 4578899999999999999987 889999999999999 8 899999975332 33 58888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++.+..... .. .+ -..++||+|+++..|+.+.+..|.. |.++.++
T Consensus 178 ~~~~~~~~~~~--~~---~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~~ 224 (451)
T 2vpq_A 178 TGFRMTEQEAQ--TA---FG--NGGLYMEKFIENFRHIEIQIVGDSY--GNVIHLG 224 (451)
T ss_dssp HHHHHHHHHHH--HH---HS--CCCEEEEECCCSEEEEEEEEEECTT--SCEEEEE
T ss_pred HHHHHHHHHHH--hh---cC--CCcEEEEEecCCCeEEEEEEEEcCC--CCEEEEe
Confidence 99988765320 00 01 1479999999966899999999864 5666554
No 39
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.81 E-value=3.8e-09 Score=119.92 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=37.3
Q ss_pred cCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
..-+++.+|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||....| |+ ||.+. |++++
T Consensus 131 ~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~i--g-yPvVVKp~~g~G--G~---------Gv~iv~s~eEL 196 (1165)
T 2qf7_A 131 QLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAI--G-YPVMLKASWGGG--GR---------GMRVIRSEADL 196 (1165)
T ss_dssp HHHSHHHHHHHHHHTTCCBC------------------------------------------------------------
T ss_pred HHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhc--C-CCEEEEeCCCCC--CC---------CEEEECCHHHH
Confidence 34578899999999999999998 788999999999999 8 899999975332 33 58888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeee
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~ 160 (422)
.++++.+..... ...| ...++||+|+++++|+.+.+..|.. |.++.+
T Consensus 197 ~~a~~~~~~~a~-----~~fg--~~~vlVEefI~gg~EisV~vl~D~~--G~vv~l 243 (1165)
T 2qf7_A 197 AKEVTEAKREAM-----AAFG--KDEVYLEKLVERARHVESQILGDTH--GNVVHL 243 (1165)
T ss_dssp ------------------------------CCCSSEEEEEEEEEECTT--SCEEEE
T ss_pred HHHHHHHHHHHH-----hhcC--CCcEEEEEeccCCcEEEEEEEEcCC--CcEEEE
Confidence 999888765321 0112 1479999999988999999999975 566544
No 40
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.81 E-value=4.8e-09 Score=114.03 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH-hHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEE--C--CHHHHH
Q 014588 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAI-QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI--V--KKEEVE 105 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a-~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l--~--~~ee~~ 105 (422)
++..+|++|+++|||+|++.++++.+++.+++ +.+ | +|+|+||.. |+.|+ ||.+ + +.+++.
T Consensus 484 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~--g-~PvVVKP~~--G~~G~---------GV~iv~~~~s~eel~ 549 (750)
T 3ln6_A 484 NKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQ--D-KPIVVKPKS--TNFGL---------GISIFKTSANLASYE 549 (750)
T ss_dssp TSHHHHHHHHHTTCCCCCCCCEETTTTHHHHHHHSS--S-SCEEEEETT--CCSSS---------SCEEESSCCCHHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhc--C-CcEEEEeCC--CCCCC---------CEEEEeCCCCHHHHH
Confidence 78899999999999999999999999998777 667 8 899999964 44454 4665 3 799999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCc-----eeeeccCCCceeeecc
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGP-----IIIGCSKGGTSIEDLA 172 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gp-----vi~~g~~GGi~iE~~~ 172 (422)
++++.++.. ...++||+|++ |.|+++.+..|+.+ ++ ..+.| -|+..|+.+-
T Consensus 550 ~a~~~~~~~-------------~~~vlVEefI~-G~E~~v~Vvgg~vv-aa~~r~p~~v~G-dG~~tI~eLI 605 (750)
T 3ln6_A 550 KAIDIAFTE-------------DSAILVEEYIE-GTEYRFFVLEGDCI-AVLLRVAANVVG-DGIHTISQLV 605 (750)
T ss_dssp HHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEETTEEE-EEEEEECCEEEC-CTTCCHHHHH
T ss_pred HHHHHHHhh-------------CCcEEEEeccC-CCEEEEEEECCEEE-EEEEEecceEec-CCccCHHHHH
Confidence 999887632 24799999999 89999999887665 32 23456 7888777644
No 41
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.81 E-value=2.6e-08 Score=102.13 Aligned_cols=102 Identities=26% Similarity=0.253 Sum_probs=80.6
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCe-EEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~P-vVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..-+++..|++|+++|||+|++..+++.+|+.++++.+ | || +|+||....+ || ||.+. |++++.
T Consensus 125 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvvKp~~~~g--g~---------Gv~~v~~~~el~ 190 (452)
T 2qk4_A 125 LESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSA--D-FPALVVKASGLAA--GK---------GVIVAKSKEEAC 190 (452)
T ss_dssp HHHBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHC--S-SCEEEEEESBC-----C---------CEEECSSHHHHH
T ss_pred HhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhC--C-CCeEEEEeCCCCC--CC---------CEEEeCCHHHHH
Confidence 34678899999999999999999999999999999999 8 89 9999965332 33 58888 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++++++.... .|.....++||||++ |.|+.+.+..|.
T Consensus 191 ~~~~~~~~~~~-------~g~~~~~~lvEe~i~-G~E~sv~~~~dG 228 (452)
T 2qk4_A 191 KAVQEIMQEKA-------FGAAGETIVIEELLD-GEEVSCLCFTDG 228 (452)
T ss_dssp HHHHHHTTC--------------CCEEEEECCC-SEEEEEEEEECS
T ss_pred HHHHHHHhhhh-------ccCCCCeEEEEECCC-CCeEEEEEEECC
Confidence 99998865320 121125799999999 899999998864
No 42
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.80 E-value=2.4e-08 Score=101.14 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=81.4
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-+++..|++|+++|||+|++..+++.+|+.++++.+ + ||+|+||....+ || ||.+. |++++.+
T Consensus 98 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~--~-~P~vvKp~~~~g--g~---------Gv~~v~~~~el~~ 163 (417)
T 2ip4_A 98 IEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEV--G-VPVVVKDSGLAA--GK---------GVTVAFDLHQAKQ 163 (417)
T ss_dssp HHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHH--C-SSEEEECTTSCS--ST---------TCEEESCHHHHHH
T ss_pred HHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHc--C-CCEEEEECCCCC--CC---------CEEEeCCHHHHHH
Confidence 34588899999999999999999999999999999999 8 899999964322 33 57888 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++++++... .+ ..++||||++ |.|+.+.+..|.
T Consensus 164 ~~~~~~~~~--------~~---~~~lvEe~i~-g~E~sv~~~~~G 196 (417)
T 2ip4_A 164 AVANILNRA--------EG---GEVVVEEYLE-GEEATVLALTDG 196 (417)
T ss_dssp HHHHHTTSS--------SC---CCEEEEECCC-SCEEEEEEEESS
T ss_pred HHHHHHhhc--------cC---CeEEEEECcc-CcEEEEEEEEeC
Confidence 999886322 12 4799999999 889999998864
No 43
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.78 E-value=3.1e-08 Score=101.70 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=86.6
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE 103 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee 103 (422)
+..-+++..|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||....+ |+ ||.+. |.++
T Consensus 116 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~--g-~PvvvKp~~g~g--g~---------Gv~~v~~~~e 181 (461)
T 2dzd_A 116 DMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAH--G-YPIIIKAALGGG--GR---------GMRIVRSKSE 181 (461)
T ss_dssp HHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHH--C-SCEEEEESTTCS--SS---------SEEEECCGGG
T ss_pred HHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhc--C-CcEEEEeCCCCC--CC---------CEEEeCCHHH
Confidence 345788999999999999999997 789999999999999 8 899999975332 33 58888 9999
Q ss_pred HHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceee
Q 014588 104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIII 159 (422)
Q Consensus 104 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~ 159 (422)
+.++++++..... . ..|. ..++||+|++++.|+.+.+..|.. |.++.
T Consensus 182 l~~~~~~~~~~~~---~--~~~~--~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~ 228 (461)
T 2dzd_A 182 VKEAFERAKSEAK---A--AFGS--DEVYVEKLIENPKHIEVQILGDYE--GNIVH 228 (461)
T ss_dssp HHHHHHHHHHHHH---H--HTSC--CCEEEEECCCSCEEEEEEEEECTT--CCEEE
T ss_pred HHHHHHHHHHHHH---h--hcCC--CcEEEEECCCCCeEEEEEEEEcCC--CCEEE
Confidence 9999988765320 0 0121 479999999976899999998864 55553
No 44
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.78 E-value=2.4e-08 Score=102.17 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHH-HHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEV-KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea-~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
.-+++..|++|+++|||+|++. .+++.+|+ .++++++ | ||+|+||....+ |+ ||.+. |.+++
T Consensus 113 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~--g-~PvvvKp~~g~g--g~---------Gv~~v~~~~el 178 (449)
T 2w70_A 113 MGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRI--G-YPVIIKASGGGG--GR---------GMRVVRGDAEL 178 (449)
T ss_dssp HHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHH--C-SSEEEEETTCCT--TT---------TCEEECSHHHH
T ss_pred hcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHh--C-CcEEEEECCCCC--CC---------CEEEeCCHHHH
Confidence 4578889999999999999997 88999999 9999999 8 899999975332 33 57778 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
.+++++++.... . ..| -..++||||++++.|+.+.+..|.. |.++.++
T Consensus 179 ~~~~~~~~~~~~--~---~~~--~~~~lvEe~i~g~~e~~v~~~~~~~--G~~~~~~ 226 (449)
T 2w70_A 179 AQSISMTRAEAK--A---AFS--NDMVYMEKYLENPRHVEIQVLADGQ--GNAIYLA 226 (449)
T ss_dssp HHHHHHHHHHHH--H---HHS--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEEE
T ss_pred HHHHHHHHHHHH--h---hcC--CCcEEEEeccCCCeEEEEEEEEcCC--CCEEEEe
Confidence 999988765320 0 001 1479999999976899999999863 5665544
No 45
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.77 E-value=1.9e-08 Score=100.71 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=81.8
Q ss_pred cCCCHHHHHHHH-HHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL-~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..-+++..|++| +++|||+|++..+++.+|+.++++++ | ||+|+||.... .|+ ||.+. |++++.
T Consensus 109 ~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~~g~--gg~---------Gv~~v~~~~el~ 174 (391)
T 1kjq_A 109 LTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADI--G-YPCIVKPVMSS--SGK---------GQTFIRSAEQLA 174 (391)
T ss_dssp HHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHH--C-SSEEEEESCC-----C---------CCEEECSGGGHH
T ss_pred HhhCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhc--C-CCEEEEeCCCC--CCC---------CeEEECCHHHHH
Confidence 345778899998 89999999999999999999999999 8 89999997432 233 57777 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++++++..... + ....++||+|++++.|+.+.+.+|..
T Consensus 175 ~~~~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 175 QAWKYAQQGGR--------A-GAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp HHHHHHHHHSG--------G-GCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred HHHHHHHhhcc--------c-CCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 99988765421 1 12479999999988999999988854
No 46
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.76 E-value=4.5e-08 Score=96.87 Aligned_cols=94 Identities=21% Similarity=0.176 Sum_probs=74.9
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
...+++..|++|+++|||+|++..+++.+ ....+.+ + ||+|+||... +.+ -||.+. |++++.+
T Consensus 129 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~--~~~~~~l--g-~PvvvKP~~~--~~s---------~Gv~~v~~~~el~~ 192 (346)
T 3se7_A 129 LCMDKSLTYLVARSAGIATPNFWTVTADE--KIPTDQL--T-YPVFVKPARS--GSS---------FGVSKVAREEDLQG 192 (346)
T ss_dssp HHHSHHHHHHHHHHTTCBCCCEEEEETTS--CCCTTTC--C-SSEEEEESSC--CTT---------TTCEEECSHHHHHH
T ss_pred HHhCHHHHHHHHHHcCcCcCCEEEEcCcH--HHHHHhc--C-CCEEEEeCCC--CCC---------cCEEEECCHHHHHH
Confidence 34688899999999999999999998765 3345567 8 8999999642 223 246777 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++.+... -..++||+|++ |.|+.+++..|.
T Consensus 193 a~~~~~~~-------------~~~vlvEe~I~-G~E~~v~vl~~~ 223 (346)
T 3se7_A 193 AVEAAREY-------------DSKVLIEEAVI-GTEIGCAVMGNG 223 (346)
T ss_dssp HHHHHTTT-------------CSEEEEEECCC-SEEEEEEEEEET
T ss_pred HHHHHHhC-------------CCcEEEEeCcC-CEEEEEEEEecC
Confidence 99887532 14799999999 899999999885
No 47
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.75 E-value=3.6e-08 Score=98.92 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHH----HHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~e----a~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
.+++..|++|+++|||+|++..+++.++ +.++++.+ | ||+|+||... +.+ -||.+. |.+++
T Consensus 134 ~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~--g-~PvvVKP~~~--~~s---------~Gv~~v~~~~el 199 (377)
T 1ehi_A 134 FDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAEL--G-NIVFVKAANQ--GSS---------VGISRVTNAEEY 199 (377)
T ss_dssp HSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHH--C-SCEEEEESSC--CTT---------TTEEEECSHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCEEEEeccccchHHHHHHHHhc--C-CCEEEEeCCC--CCC---------cCEEEeCCHHHH
Confidence 5788999999999999999999988765 66777889 8 8999999753 223 358888 99999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
.++++..+.. -..++||+|+++.+|+.+++..|.
T Consensus 200 ~~a~~~~~~~-------------~~~vlvEe~I~G~~E~~v~vl~~~ 233 (377)
T 1ehi_A 200 TEALSDSFQY-------------DYKVLIEEAVNGARELEVGVIGND 233 (377)
T ss_dssp HHHHHHHTTT-------------CSCEEEEECCCCSCEEEEEEEESS
T ss_pred HHHHHHHHhc-------------CCcEEEEcCCCCCceEEEEEEcCC
Confidence 9998886432 147999999994399999999885
No 48
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.74 E-value=1.5e-08 Score=98.10 Aligned_cols=97 Identities=18% Similarity=0.266 Sum_probs=76.7
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHH-HHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKK-AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~-~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
...++...|++|+++|||+|++.++++.+++.. +++.+ + ||+|+||....+ + -||.+. +.+++.
T Consensus 94 ~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~--~-~P~vvKP~~~~~--s---------~Gv~~v~~~~el~ 159 (307)
T 3r5x_A 94 ICMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKL--G-FPLVVKPNSGGS--S---------VGVKIVYDKDELI 159 (307)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHHHHHHH--C-SSEEEEECC---------------CCCEEECSHHHHH
T ss_pred HHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHHHHHhc--C-CCEEEEeCCCCC--C---------CCEEEeCCHHHHH
Confidence 346788999999999999999999988777654 67788 8 899999975322 2 257777 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+++++++... ..++||+|++ |.|+.+.+..+..
T Consensus 160 ~~~~~~~~~~-------------~~~lvee~i~-G~e~~v~v~~g~~ 192 (307)
T 3r5x_A 160 SMLETVFEWD-------------SEVVIEKYIK-GEEITCSIFDGKQ 192 (307)
T ss_dssp HHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEETTEE
T ss_pred HHHHHHHhcC-------------CCEEEECCcC-CEEEEEEEECCEE
Confidence 9998876431 4799999999 7999999965543
No 49
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.74 E-value=6.1e-09 Score=118.46 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHcCCCCCCe-eeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKG-LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~-~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
-+++.+|++|+++|||+|++ .++++.+|+.++++++ | ||+|+||....+ || ||.+. |++++.++
T Consensus 143 ~DK~~ak~ll~~aGIPvpp~~~~v~s~eea~~~a~~i--G-yPvVVKP~~GgG--Gk---------GV~iv~s~eEL~~a 208 (1236)
T 3va7_A 143 GLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKL--E-YPVMVKSTAGGG--GI---------GLQKVDSEDDIERV 208 (1236)
T ss_dssp HSTTHHHHHHHHTTCCCCC-------------------------------------------------------------
T ss_pred cCHHHHHHHHHHcCCCCCCeeEecCCHHHHHHHHHHc--C-CCEEEEeCCCCC--CC---------CEEEECCHHHHHHH
Confidence 35778999999999999885 7889999999999999 8 899999975332 33 58888 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++.+..... . ..+ -..++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 209 ~~~~~~~a~---~--~~~--~~~vlVEeyI~G~rEisV~vl~Dg~--g~vv~l~ 253 (1236)
T 3va7_A 209 FETVQHQGK---S--YFG--DAGVFMERFVNNARHVEIQMMGDGF--GKAIAIG 253 (1236)
T ss_dssp -------------------------------CCEEEEEEEEEESS--SCEEEEE
T ss_pred HHHHHHHHH---h--ccC--CCcEEEeeccCCCeEEEEEEEecCC--ceEEEEe
Confidence 988764321 0 112 2479999999976999999999974 6777765
No 50
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.73 E-value=1.2e-08 Score=109.85 Aligned_cols=110 Identities=13% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCeee--eCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~--~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
.-+++.+|++|+++|||+|+++. +++.+|+.++++++ | ||+|+||.... -| .||.+. |++++.
T Consensus 139 ~~DK~~~k~~l~~~GVpvpp~~~~~~~s~~e~~~~a~~i--g-yPvvvKp~~G~--Gg---------~Gv~iv~~~~el~ 204 (675)
T 3u9t_A 139 MGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRI--G-YPVLLKAAAGG--GG---------KGMKVVEREAELA 204 (675)
T ss_dssp HTSHHHHHHHHHHTTCCBCCCCCSCCCCTTHHHHHHHHS--C-SSBCCBCCC-----------------CCCBCCTTTHH
T ss_pred hchHHHHHHHHHHcCcCcCCccccCCCCHHHHHHHHHhC--C-CcEEEEECCCC--CC---------ccEEEECCHHHHH
Confidence 35788999999999999999875 78999999999999 8 89999997432 23 357788 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++.+..... ...| ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 205 ~a~~~~~~ea~-----~~fg--~~~vlvEeyI~g~reiev~v~~d~~--G~vv~l~ 251 (675)
T 3u9t_A 205 EALSSAQREAK-----AAFG--DARMLVEKYLLKPRHVEIQVFADRH--GHCLYLN 251 (675)
T ss_dssp HHHSCCCC---------------CCCBCCBCCSSCBCEEEEEEECSS--SCEEEEE
T ss_pred HHHHHHHHHHH-----HhcC--CCcEEEEeecCCCcEEEEEEEEcCC--CCEEEEe
Confidence 98877654321 0112 2479999999977999999999974 6777765
No 51
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.72 E-value=4.3e-08 Score=98.61 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=79.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-+++..|++|+++|||+|++..+++.+|+.++++++ | ||+|+||....| | -||.+. |++++.+
T Consensus 106 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~~g~g--g---------~Gv~~v~~~~el~~ 171 (403)
T 4dim_A 106 MCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENL--K-LPVIVKATDLQG--S---------KGIYIAKKEEEAID 171 (403)
T ss_dssp HHHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTS--C-SSEEEECSCC----------------CEEESSHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcC--C-CCEEEEECCCCC--C---------CCEEEECCHHHHHH
Confidence 44678899999999999999999999999999999999 8 899999965322 2 357788 9999999
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
+++++.... . ...++||+|++ |.|+.+.+..+
T Consensus 172 ~~~~~~~~~---------~--~~~~lvEe~i~-g~e~sv~~~~~ 203 (403)
T 4dim_A 172 GFNETMNLT---------K--RDYCIVEEFIE-GYEFGAQAFVY 203 (403)
T ss_dssp HHHHHHHHC---------S--SSCCEEEECCC-SEEEEEEEEEE
T ss_pred HHHHHHhcC---------c--CCcEEEEEccC-CcEEEEEEEEE
Confidence 999887543 0 14799999999 78999988764
No 52
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.70 E-value=3.9e-08 Score=100.04 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=76.1
Q ss_pred cCCCHHHHHHHH-HHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 28 ~~L~e~~ak~lL-~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..-+++..|++| +++|||+|++..+++.+|+.++++++ | ||+|+||.... .|+ ||.+. |++++.
T Consensus 117 ~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~--g-~P~vvKp~~g~--gg~---------Gv~~v~~~~el~ 182 (433)
T 2dwc_A 117 IAMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKI--G-YPCHTKAIMSS--SGK---------GSYFVKGPEDIP 182 (433)
T ss_dssp HHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHH--C-SSEEEEECCC-----------------EEECSGGGHH
T ss_pred HhhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhc--C-CCEEEEECCCc--CCC---------CeEEECCHHHHH
Confidence 345788899999 89999999999999999999999999 8 89999997432 233 57788 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++++++..... + ....++||+|++.+.|+.+.+.++.
T Consensus 183 ~~~~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~ 219 (433)
T 2dwc_A 183 KAWEEAKTKAR--------G-SAEKIIVEEHIDFDVEVTELAVRHF 219 (433)
T ss_dssp HHHHC------------------CCEEEEECCCCSEEEEECCEEEE
T ss_pred HHHHHHHhhcc--------c-CCCCEEEEccCCCCeeEEEEEEecc
Confidence 99887764320 0 1247999999998899999988864
No 53
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.68 E-value=5.7e-09 Score=118.26 Aligned_cols=110 Identities=21% Similarity=0.239 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~--~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
.-+++.+|++|+++|||+|++. .+++.+|+.++++++ | ||+|+||....| |+ ||.+. |++++.
T Consensus 116 ~~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~i--G-yPvVVKP~~GgG--g~---------Gv~vv~s~eeL~ 181 (1150)
T 3hbl_A 116 FGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEA--G-FPLMIKATSGGG--GK---------GMRIVREESELE 181 (1150)
T ss_dssp HHSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGT--C-SSEEEECCC------------------CEECCSSSCT
T ss_pred hCCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHc--C-CCEEEEeCCCCC--CC---------CEEEECCHHHHH
Confidence 3578999999999999999998 789999999999999 8 899999974322 33 57777 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++.+..... ...| ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 182 ~a~~~a~~~a~-----~~fg--~~~vlVEeyI~G~reieV~vl~d~~--G~vv~l~ 228 (1150)
T 3hbl_A 182 DAFHRAKSEAE-----KSFG--NSEVYIERYIDNPKHIEVQVIGDEH--GNIVHLF 228 (1150)
T ss_dssp HHHHSSSSSCC-------------CBEEECCCSSCEEEEEEEEECSS--SCEEEEE
T ss_pred HHHHHHHHHHH-----hhcC--CCcEEEEEccCCCcEEEEEEEEeCC--CCEEEEE
Confidence 98887654321 0112 2579999999966899999999974 6777654
No 54
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.67 E-value=1.3e-07 Score=95.87 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=75.0
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-+++..|++|+++|||+|++..+++.+|+.+ ..+ | ||+|+||.... .|+ ||.+. |++++.+
T Consensus 109 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~--~~~--g-~P~vvKp~~g~--gs~---------Gv~~v~~~~el~~ 172 (425)
T 3vot_A 109 NCRNKNKTRSILQQNGLNTPVFHEFHTLADLEN--RKL--S-YPLVVKPVNGF--SSQ---------GVVRVDDRKELEE 172 (425)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEESSGGGGTT--CCC--C-SSEEEEESCC----------------CEEECSHHHHHH
T ss_pred HhhCHHHHHHHHHHCCCCCCceeccCcHHHHHH--hhc--C-CcEEEEECCCC--CCC---------CceEechHHHHHH
Confidence 345788999999999999999999999988753 567 8 89999996422 233 58888 9999999
Q ss_pred HHHHHhccccc-ccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 107 LAGKMLGQILV-TKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 107 a~~~l~~~~~~-~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++++...... .... ...-..+++|+|++ |.|+.+.+..+.
T Consensus 173 a~~~~~~~~~~~~~~~---~~~~~~~lvEe~i~-G~e~sv~~~~~~ 214 (425)
T 3vot_A 173 AVRKVEAVNQRDLNRF---VHGKTGIVAEQFID-GPEFAIETLSIQ 214 (425)
T ss_dssp HHHHHHHHTTSSHHHH---HTTCCCEEEEECCC-SCEEEEEEEEET
T ss_pred HHHHHHhhhhhhhhhh---ccCCCcEEEEEEec-CcEEEEEEEEeC
Confidence 99987643200 0000 00125799999998 789998877653
No 55
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.66 E-value=1e-07 Score=95.00 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHH-------HHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVD-------EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK 101 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~-------ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ 101 (422)
.+++..|++|+++|||+|++..+++.+ ++.++++.+ | ||+|+||.... .++ ||.+. +.
T Consensus 128 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~--g-~PvvvKP~~g~--~s~---------Gv~~v~~~ 193 (364)
T 2i87_A 128 MDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKL--N-YPVFVKPANLG--SSV---------GISKCNNE 193 (364)
T ss_dssp HSHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHC--C-SSEEEEESSCS--SCT---------TCEEESSH
T ss_pred cCHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHHHHHhc--C-CCEEEEeCCCC--CCC---------CEEEECCH
Confidence 577888999999999999999998776 466777888 8 89999996432 232 57778 99
Q ss_pred HHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 102 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++.++++.+... -..++||+|++ |.|+.+.+..|.
T Consensus 194 ~el~~a~~~~~~~-------------~~~~lvEe~I~-G~E~~v~vl~~~ 229 (364)
T 2i87_A 194 AELKEGIKEAFQF-------------DRKLVIEQGVN-AREIEVAVLGND 229 (364)
T ss_dssp HHHHHHHHHHHTT-------------CSEEEEEECCC-CEEEEEEEEESS
T ss_pred HHHHHHHHHHHhc-------------CCeEEEEeCcc-CeEEEEEEEcCC
Confidence 9999998876532 14799999999 799999999885
No 56
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.61 E-value=1.2e-07 Score=91.21 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHH--------HHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKK--------AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV- 99 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~--------~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~- 99 (422)
..+++..|++|+++|||+|++..+++. ++.+ +.+.+ + ||+|+||.... .| -||.+.
T Consensus 94 ~~dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~--~-~p~vvKP~~g~--~~---------~gv~~v~ 158 (306)
T 1iow_A 94 SMDKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQLAEISAL--G-LPVIVKPSREG--SS---------VGMSKVV 158 (306)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTT--C-SSEEEEETTCC--TT---------TTCEEES
T ss_pred HcCHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhhhhHHhcc--C-CCEEEEeCCCC--CC---------CCEEEeC
Confidence 357888999999999999999999888 7766 67788 8 89999996432 23 357777
Q ss_pred CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEec
Q 014588 100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD 150 (422)
Q Consensus 100 ~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D 150 (422)
+.+++.++++++... ...++||+|++ |.|+.+.+..+
T Consensus 159 ~~~el~~~~~~~~~~-------------~~~~lvee~i~-g~e~~v~~~~g 195 (306)
T 1iow_A 159 AENALQDALRLAFQH-------------DEEVLIEKWLS-GPEFTVAILGE 195 (306)
T ss_dssp SGGGHHHHHHHHTTT-------------CSEEEEEECCC-CCEEEEEEETT
T ss_pred CHHHHHHHHHHHHhh-------------CCCEEEEeCcC-CEEEEEEEECC
Confidence 999999988876421 14799999999 89999999844
No 57
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.57 E-value=8e-08 Score=96.36 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHH--HHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDE--VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~e--a~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..++...|++|+++|||+|++..+++.++ .....+.+ | ||+|+||... +.+ -||.+. |++++.
T Consensus 149 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~l--g-~PvvVKP~~g--gss---------~GV~~v~~~~eL~ 214 (373)
T 3lwb_A 149 GMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERL--G-LPVFVKPARG--GSS---------IGVSRVSSWDQLP 214 (373)
T ss_dssp HHBHHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHH--C-SCEEEEESBC--STT---------TTCEEECSGGGHH
T ss_pred HcCHHHHHHHHHHcCcCCCCEEEEECcccchhHHHHHhc--C-CCEEEEeCCC--CCC---------CCEEEeCCHHHHH
Confidence 35788999999999999999999988764 23446788 8 8999999642 223 357777 999999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++++...... ..++||+|++ |+|+.+++..|..
T Consensus 215 ~a~~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~~~~ 247 (373)
T 3lwb_A 215 AAVARARRHD-------------PKVIVEAAIS-GRELECGVLEMPD 247 (373)
T ss_dssp HHHHHHHTTC-------------SSEEEEECCE-EEEEEEEEEECTT
T ss_pred HHHHHHHhcC-------------CCEEEeCCCC-CeEEEEEEEECCC
Confidence 9988876321 4799999999 8999999998864
No 58
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.54 E-value=5.8e-08 Score=92.03 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
..+++..+++|+++|||+|++..+++.+++.++++++ + ||+|+||....+ | .||.+. +.+++.++
T Consensus 86 ~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~--~-~p~vvKp~~g~~--~---------~gv~~v~~~~el~~~ 151 (280)
T 1uc8_A 86 CGDKWATSVALAKAGLPQPKTALATDREEALRLMEAF--G-YPVVLKPVIGSW--G---------RLLAXXXXXXXXXXX 151 (280)
T ss_dssp HHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--C-SSEEEECSBCCB--C---------SHHHHHHHHHC----
T ss_pred hCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHh--C-CCEEEEECCCCC--c---------ccceecccccccchh
Confidence 4578889999999999999999999999999999999 8 899999965322 2 357677 88888887
Q ss_pred HHHH--hcccccccccCCCCcccceEEEEeecCC-CceEEEEEEecC
Q 014588 108 AGKM--LGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDR 151 (422)
Q Consensus 108 ~~~l--~~~~~~~~~~~~~g~~~~~vlVee~i~~-g~El~vgv~~D~ 151 (422)
++++ +... + ...++||+|+++ +.|+.+.+..+.
T Consensus 152 ~~~~~~~~~~---------~--~~~~lvqe~i~~~~~e~~v~v~~~~ 187 (280)
T 1uc8_A 152 XXXKEVLGGF---------Q--HQLFYIQEYVEKPGRDIRVFVVGER 187 (280)
T ss_dssp --------CT---------T--TTCEEEEECCCCSSCCEEEEEETTE
T ss_pred hhhHhhhccc---------C--CCcEEEEeccCCCCceEEEEEECCE
Confidence 7765 2110 0 247999999996 789988887554
No 59
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.51 E-value=1.8e-07 Score=101.64 Aligned_cols=95 Identities=19% Similarity=0.311 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH-hHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEE-----CCHHHH
Q 014588 31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAI-QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-----VKKEEV 104 (422)
Q Consensus 31 ~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a-~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l-----~~~ee~ 104 (422)
++..+|++|+++|||+|++..+++.+++.+++ +.+ | ||+|+||... +.|| ||.+ .|.+++
T Consensus 489 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~--g-~PvVVKP~~g--~~G~---------GV~iv~~~v~~~eel 554 (757)
T 3ln7_A 489 NKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFE--N-RAVVIKPKST--NYGL---------GITIFQQGVQNREDF 554 (757)
T ss_dssp HSHHHHHHHHHHTCCCCCEEEESCHHHHHHGGGGSS--S-SCEEEEESSC--STTT---------TCEECSSCCCCHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhc--C-CCEEEEeCCC--CCCC---------CeEEecCCCCCHHHH
Confidence 56678999999999999999999999997776 778 8 8999999753 3344 3544 288999
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCC
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT 153 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f 153 (422)
.++++..+.. -..++||+|++ |.|+.+.+..|...
T Consensus 555 ~~al~~a~~~-------------~~~vlVEefI~-G~Ei~v~Vlggkvv 589 (757)
T 3ln7_A 555 AKALEIAFRE-------------DKEVMVEDYLV-GTEYRFFVLGDETL 589 (757)
T ss_dssp HHHHHHHHHH-------------CSSEEEEECCC-SEEEEEEEETTEEE
T ss_pred HHHHHHHHhc-------------CCcEEEEEcCC-CcEEEEEEECCEEE
Confidence 9988876532 13699999998 79999999866544
No 60
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.49 E-value=1.3e-07 Score=93.37 Aligned_cols=93 Identities=16% Similarity=0.089 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~ 108 (422)
.+++..|++|+++|||+|++..+++.+++.. +.+ + ||+|+||.... .+ -||.+. +++++.+++
T Consensus 131 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~--~~~--~-~PvvvKP~~~~--~s---------~Gv~~v~~~~el~~a~ 194 (343)
T 1e4e_A 131 MDKSLTYIVAKNAGIATPAFWVINKDDRPVA--ATF--T-YPVFVKPARSG--SS---------FGVKKVNSADELDYAI 194 (343)
T ss_dssp HSHHHHHHHHHHTTCBCCCEEEECTTCCCCG--GGS--C-SCEEEEESSCC--TT---------TTCEEECSGGGHHHHH
T ss_pred hCHHHHHHHHHHCCCCcCCEEEEechhhhhh--hcc--C-CCEEEEeCCCC--CC---------CCEEEeCCHHHHHHHH
Confidence 5788899999999999999999988766532 677 8 89999996532 22 257778 999999988
Q ss_pred HHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 109 ~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
+++... -..++||+|++ |.|+.+.+..|..
T Consensus 195 ~~~~~~-------------~~~~lvEe~I~-G~E~~v~vl~~~~ 224 (343)
T 1e4e_A 195 ESARQY-------------DSKILIEQAVS-GCEVGCAVLGNSA 224 (343)
T ss_dssp HHHTTT-------------CSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHhc-------------CCcEEEEeCcC-CeEEEEEEEeCCC
Confidence 876432 14799999998 8999999998863
No 61
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.41 E-value=2.7e-07 Score=92.12 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=72.5
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
+..-+++..|++|+++|||+|++..+++.+| +++++ + ||+|+||.... +.|+ ||.+. |.+++.
T Consensus 96 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~~~~--~-~P~vvKp~~~~-y~g~---------Gv~~v~~~~el~ 159 (380)
T 3ax6_A 96 EIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREF--G-FPVVQKARKGG-YDGR---------GVFIIKNEKDLE 159 (380)
T ss_dssp HHHHSHHHHHHHHHHTTCCCCCEEECSSHHH---HHHTT--C-SSEEEEESCCC---------------EEEECSGGGGG
T ss_pred HHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HHHhc--C-CCEEEEecCCC-CCCC---------CeEEECCHHHHH
Confidence 3446788999999999999999999999887 56678 8 89999997532 0233 57777 877654
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
++++ ..++||||++.|.|+.+.+..|.. |-+..++
T Consensus 160 ~~~~-------------------~~~lvEe~i~~g~e~sv~~~~~~~--G~~~~~~ 194 (380)
T 3ax6_A 160 NAIK-------------------GETYLEEFVEIEKELAVMVARNEK--GEIACYP 194 (380)
T ss_dssp GCCC-------------------SSEEEEECCCEEEEEEEEEEECSS--CCEEEEE
T ss_pred HHhc-------------------CCEEEEeccCCCeeEEEEEEECCC--CCEEEEC
Confidence 3221 479999999878999999999854 4444444
No 62
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.41 E-value=2.7e-07 Score=90.36 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
..+++..|++|+++|||+|++..+++.++. +. .+ | ||+|+||... +.++ ||.+. |.+++.++
T Consensus 116 ~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~--~~-~~--g-~PvvvKP~~g--~~s~---------Gv~~v~~~~el~~a 178 (322)
T 2fb9_A 116 CMDKDLSKRVLAQAGVPVVPWVAVRKGEPP--VV-PF--D-PPFFVKPANT--GSSV---------GISRVERFQDLEAA 178 (322)
T ss_dssp HHCHHHHHHHHHHTTCCCCCEEEEETTSCC--CC-CS--C-SCEEEEETTC--CTTT---------TCEEESSHHHHHHH
T ss_pred HcCHHHHHHHHHHCCCCCCCEEEEECchhh--hh-cc--C-CCEEEEeCCC--CCCC---------CEEEECCHHHHHHH
Confidence 357888999999999999999999877642 22 67 8 8999999642 2233 57777 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
++..+.. ...++||+++++.+|+.+++..|.
T Consensus 179 ~~~~~~~-------------~~~vlvEe~I~G~~E~~v~vl~~~ 209 (322)
T 2fb9_A 179 LALAFRY-------------DEKAVVEKALSPVRELEVGVLGNV 209 (322)
T ss_dssp HHHHTTT-------------CSEEEEEECCSSCEEEEEEEESSS
T ss_pred HHHHHhc-------------CCeEEEEeCCCCCeeEEEEEEeCC
Confidence 8876532 147999999993399999999875
No 63
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.40 E-value=3.4e-07 Score=91.59 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHH--HHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVD--EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~--ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..++...|++|+++|||+|++..+++.+ ++.+ ++.+ | ||+|+||... +.++ ||.+. |.+++.
T Consensus 147 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~l--g-~PvvVKP~~g--~ss~---------Gv~~v~~~~el~ 211 (367)
T 2pvp_A 147 SYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALD-LMNF--N-FPFIVKPSNA--GSSL---------GVNVVKEEKELI 211 (367)
T ss_dssp HHSHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH-HCCS--C-SCEEEEESSC--CTTT---------TCEEESSTTSHH
T ss_pred HcCHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH-Hhcc--C-CCEEEEECCC--CCCC---------CEEEECCHHHHH
Confidence 3578889999999999999999998876 6766 6778 8 8999999642 2232 46677 889999
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCce---EEEEE
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE---MYFAI 147 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~E---l~vgv 147 (422)
++++..+.. -..++||+|+++.+| +.+++
T Consensus 212 ~a~~~~~~~-------------~~~vlVEe~I~G~~E~svi~v~v 243 (367)
T 2pvp_A 212 YALDSAFEY-------------SKEVLIEPFIQGVKEYNLAGCKI 243 (367)
T ss_dssp HHHHHHTTT-------------CSCEEEEECCTTCEEEEEEEEEE
T ss_pred HHHHHHHhc-------------CCcEEEEeCCCCCceeeEEEEEE
Confidence 988876532 147999999993399 44555
No 64
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.39 E-value=7.8e-07 Score=86.77 Aligned_cols=98 Identities=22% Similarity=0.226 Sum_probs=60.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHH--hHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAI--QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV 104 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a--~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~ 104 (422)
..-+++..|++|+++|||+|++.. +.+++.++. +.+ + ||+|+||....+ | .||.+. |++++
T Consensus 111 ~~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~--~-~P~vvKp~~g~g--~---------~gv~~v~~~~el 174 (331)
T 2pn1_A 111 LCFDKYTMYEYCLRQGIAHARTYA--TMASFEEALAAGEV--Q-LPVFVKPRNGSA--S---------IEVRRVETVEEV 174 (331)
T ss_dssp HHHBHHHHHHHHHHHTCCCCCEES--SHHHHHHHHHTTSS--C-SCEEEEESBC--------------------------
T ss_pred HhhCHHHHHHHHHHcCCCCCcEEe--cHHHhhhhhhcccC--C-CCEEEEeCCCCC--C---------CCeEEeCCHHHH
Confidence 346788999999999999999865 567776665 467 7 899999965322 2 368788 88888
Q ss_pred HHHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeee
Q 014588 105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG 160 (422)
Q Consensus 105 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~ 160 (422)
.++++. ...++||||++ |.|+.+.+..|+.. |.++.+
T Consensus 175 ~~~~~~-----------------~~~~lvee~i~-G~e~~v~~~~d~~~-G~~~~~ 211 (331)
T 2pn1_A 175 EQLFSK-----------------NTDLIVQELLV-GQELGVDAYVDLIS-GKVTSI 211 (331)
T ss_dssp -------------------------CEEEEECCC-SEEEEEEEEECTTT-CCEEEE
T ss_pred HHHHHh-----------------CCCeEEEecCC-CcEEEEEEEEecCC-CeEEEE
Confidence 766432 13799999999 69999999998333 555543
No 65
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.14 E-value=7.2e-06 Score=81.76 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
.-+....|++|+++|||+|++ +++++| + + +|+|+||....+ || ||.+. |++|+.++
T Consensus 122 e~~k~~~k~~l~~~GIptp~~--~~~~~e-------~--~-~PvVVK~~~~a~--Gk---------Gv~v~~s~ee~~~a 178 (361)
T 2r7k_A 122 ESERSLEGKLLREAGLRVPKK--YESPED-------I--D-GTVIVKFPGARG--GR---------GYFIASSTEEFYKK 178 (361)
T ss_dssp TTCHHHHHHHHHHTTCCCCCE--ESSGGG-------C--C-SCEEEECSCCCC--------------EEEESSHHHHHHH
T ss_pred hhhHHHHHHHHHHcCcCCCCE--eCCHHH-------c--C-CCEEEeeCCCCC--CC---------CEEEECCHHHHHHH
Confidence 445567889999999999975 666654 3 5 799999976443 44 58888 99999999
Q ss_pred HHHHhcccccccccCCCCcc-cceEEEEeecCCCceEEEEEEecC
Q 014588 108 AGKMLGQILVTKQTGPQGKI-VSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~-~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+++++.... .|.. ...++||||++ |.|+++.....+
T Consensus 179 ~~~~~~~~~-------~~~~~~~~viIEEfl~-G~e~s~~~f~~~ 215 (361)
T 2r7k_A 179 AEDLKKRGI-------LTDEDIANAHIEEYVV-GTNFCIHYFYSP 215 (361)
T ss_dssp HHHHHHTTS-------CCHHHHHHCEEEECCC-SEEEEEEEEEET
T ss_pred HHHHHhccc-------cccCCCCeEEEEeccc-eEEeeEEEEecc
Confidence 998875421 1211 14699999999 788864444443
No 66
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=98.11 E-value=7.5e-06 Score=84.33 Aligned_cols=121 Identities=22% Similarity=0.244 Sum_probs=94.2
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCC-----CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN-----ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~-----~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
.+|+||+||-||+++....|.+...|+-....+-+|++ ...-.+.+.++.+.+||++++|++++-+. .+.++
T Consensus 111 ~~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~---~e~~~ 187 (480)
T 3dmy_A 111 PEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP---AEAVR 187 (480)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC---CHHHH
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC---CcHHH
Confidence 37899999999999999999999999866666666666 35556999999999999999999876542 35566
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 365 SGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
+.+++++++ ..|||++...|..... +++.|+. ..+++++...+...|+.
T Consensus 188 ~~f~~~ar~--~~KPVV~~k~Grs~~g----~r~~Gvi--rv~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 188 LKIVNAMKA--TGKPTVALFLGYTPAV----ARDENVW--FASSLDEAARLACLLSR 236 (480)
T ss_dssp HHHHHHHHH--HCSCEEEEETTCCCSS----SEETTEE--EESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCEEEEEeCCCCcc----cccCCEE--EECCHHHHHHHHHHHhc
Confidence 677776655 4899999866652221 7788988 88888888877766543
No 67
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=98.08 E-value=2.2e-05 Score=77.32 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=88.8
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEE--ccCCCCChHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVN--IFGGIMKCDVIASG 366 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~--i~~~~~~~~~~a~~ 366 (422)
.+|+||++|-||+++....|.+...|+-..-.+-++++...+ .+.+.++.+.+||++++|++. +.+ . .+ +.
T Consensus 167 ~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g-~--~e---~~ 240 (334)
T 3mwd_B 167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGG-T--EE---YK 240 (334)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSS-S--HH---HH
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCC-h--HH---HH
Confidence 578999999999999999999999999777788888873222 388999999999999999986 332 2 22 44
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCHH-----------------------HHHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 367 IVNAAKQVALKVPVVVRLEGTNVD-----------------------QGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~~~-----------------------~~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
..+++++....|||+++..|.... .-...|+++|+. +-+++++-..++.+
T Consensus 241 ~~~~~r~~~~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~--~v~~~~el~~~~~~ 313 (334)
T 3mwd_B 241 ICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVF--VPRSFDELGEIIQS 313 (334)
T ss_dssp HHHHHHTTSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCB--CCSSGGGHHHHHHH
T ss_pred HHHHHHhhcCCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCCe--EcCCHHHHHHHHHH
Confidence 555555533589999874443111 224579999998 77777766555444
No 68
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=98.02 E-value=1.3e-05 Score=77.98 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCC-HHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~-~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+||++|-||+++...+|.+...|+-..-.+-+++++. .-.+.+.++.+.+||++++|++..-+. .+.+..+..++
T Consensus 151 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~-g~~e~~~~~f~ 229 (305)
T 2fp4_A 151 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIG-GNAEENAAEFL 229 (305)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESS-SSHHHHHHHHH
T ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecC-CchhhHHHHHH
Confidence 4689999999999999999999999998888888888875 335889999999999999999866532 13334556666
Q ss_pred HHHHhcCCCCcEEEEeCCC-C-------------------HHHHHHHHHHcCCCcccccCHHHHHHHHH
Q 014588 369 NAAKQVALKVPVVVRLEGT-N-------------------VDQGKRILKESGMTLITAEDLDDAAEKAV 417 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~-~-------------------~~~~~~~L~~~Gip~~vf~~~e~Av~al~ 417 (422)
++.++....|||++...|. . ...-...|+++|+. +-+++++-..++.
T Consensus 230 ~~~~~~~~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~--~v~~~~el~~~~~ 296 (305)
T 2fp4_A 230 KQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVV--VSMSPAQLGTTIY 296 (305)
T ss_dssp HHHSCSTTCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCE--ECSSTTCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHHHCCCe--EeCCHHHHHHHHH
Confidence 6554322489999864332 1 11224589999997 6666554444433
No 69
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.01 E-value=1.9e-05 Score=76.61 Aligned_cols=92 Identities=22% Similarity=0.260 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL 107 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a 107 (422)
..++...|++|+++|||+|++ +++.+ .+ + +|+|+||....+ |+ ||.+. |.+++.++
T Consensus 98 ~~dK~~~~~~l~~~gip~p~~--~~~~~-------~l--~-~P~vvKP~~g~~--s~---------Gv~~v~~~~el~~~ 154 (334)
T 2r85_A 98 ESDRNLERKWLKKAGIRVPEV--YEDPD-------DI--E-KPVIVKPHGAKG--GK---------GYFLAKDPEDFWRK 154 (334)
T ss_dssp HHSHHHHHHHHHHTTCCCCCB--CSCGG-------GC--C-SCEEEEECC------T---------TCEEESSHHHHHHH
T ss_pred HHhHHHHHHHHHHcCCCCCCc--cCChH-------Hc--C-CCEEEEeCCCCC--CC---------CEEEECCHHHHHHH
Confidence 346788899999999999998 56654 36 6 899999975322 33 57788 99999999
Q ss_pred HHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 108 ~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
++.+..... .+ ....++||||++ |.|+.+.+..+..
T Consensus 155 ~~~~~~~~~-------~~-~~~~~lvee~i~-G~e~~~~~~~~~~ 190 (334)
T 2r85_A 155 AEKFLGIKR-------KE-DLKNIQIQEYVL-GVPVYPHYFYSKV 190 (334)
T ss_dssp HHHHHCCCS-------GG-GCCSEEEEECCC-CEEEEEEEEEETT
T ss_pred HHHHHhhcc-------cC-CCCcEEEEeccC-CceeEEEEeecCc
Confidence 888764310 00 014799999999 7898766665543
No 70
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=98.00 E-value=7.8e-06 Score=80.93 Aligned_cols=77 Identities=12% Similarity=0.254 Sum_probs=54.1
Q ss_pred cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 28 ~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
..-++...|++|+++|||+|++. .+ | ||+|+||....+ ++ ||.+. |.+++..
T Consensus 100 ~~~dK~~~k~~l~~~gip~~~~~-------------~i--g-~P~vvKp~~g~g--~~---------gv~~v~~~~~~~~ 152 (363)
T 4ffl_A 100 ISRDKKKSKDYFKSIGVPTPQDR-------------PS--K-PPYFVKPPCESS--SV---------GARIIYDDKDLEG 152 (363)
T ss_dssp HHTSHHHHHHHHHHTTCCCCCBS-------------CS--S-SCEEEECSSCCT--TT---------TCEEEC------C
T ss_pred HhhCHHHHHHHHHhcCCCCCCce-------------ec--C-CCEEEEECCCCC--Cc---------CeEEeccHHHhhh
Confidence 34578899999999999999874 35 7 899999964222 33 46666 7665321
Q ss_pred HHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecCC
Q 014588 107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK 152 (422)
Q Consensus 107 a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~ 152 (422)
. ...+++|+|++ |.|+.+.+..|..
T Consensus 153 --------~------------~~~~~~ee~i~-g~e~sv~~~~d~~ 177 (363)
T 4ffl_A 153 --------L------------EPDTLVEEYVE-GEVVSLEVVGDGS 177 (363)
T ss_dssp --------C------------CTTCEEEECCC-SEEEEEEEEEESS
T ss_pred --------h------------ccchhhhhhcc-CcEEEEEEEEECC
Confidence 1 24678999998 8899999999864
No 71
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=97.97 E-value=7.1e-05 Score=72.25 Aligned_cols=123 Identities=20% Similarity=0.290 Sum_probs=93.0
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE-GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~-~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+||++|-||+++....|.+...|+-..-.+-++++++. -.+.+.++.+.+||++++|++..-+.. +.+..+...+
T Consensus 143 ~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~-~~~~~~~~~~ 221 (288)
T 1oi7_A 143 KRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGG-SDEEEAAAWV 221 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSS-SHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC-CHHHHHHHHH
Confidence 46899999999999999999999999988888888888753 358899999999999999998665432 3334344444
Q ss_pred HHHHhcCCCCcEEEEeCCCCH--------------------HHHHHHHHHcCCCcccccCHHHHHHHHHHH
Q 014588 369 NAAKQVALKVPVVVRLEGTNV--------------------DQGKRILKESGMTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~~~--------------------~~~~~~L~~~Gip~~vf~~~e~Av~al~~~ 419 (422)
++ . ..|||++...|... ..-...|+++|+. .-+++++-..++.++
T Consensus 222 ~~--~--~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~--~~~~~~el~~~~~~~ 286 (288)
T 1oi7_A 222 KD--H--MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIP--VADTIDEIVELVKKA 286 (288)
T ss_dssp HH--H--CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCC--BCSSHHHHHHHHHHH
T ss_pred Hh--c--CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCe--EeCCHHHHHHHHHHH
Confidence 43 2 58999987554321 1124479999999 999999887777654
No 72
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=97.88 E-value=4.9e-05 Score=73.69 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=91.5
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE-GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~-~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+||++|-||+++....|.+...|+-..-.+-+++++.. -.+.+.++.+.+||++++|++..-.. .+.+..+....
T Consensus 150 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~-~~~~~~~~~~~ 228 (297)
T 2yv2_A 150 KEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIG-GDMEERAAEMI 228 (297)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSS-SSHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHH
Confidence 46899999999999999999999999988888888888753 24889999999999999999866532 23333344443
Q ss_pred HHHHhcCCCCcEEEEeCCCCH-------------------HH-HHHHHHHcCCCcccccCHHHHHHHHHHH
Q 014588 369 NAAKQVALKVPVVVRLEGTNV-------------------DQ-GKRILKESGMTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~~~-------------------~~-~~~~L~~~Gip~~vf~~~e~Av~al~~~ 419 (422)
+. ....|||++...|... .+ -...|+++|+. .-+++++-..++.++
T Consensus 229 ~~---~~~~KPVv~~k~G~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~--~v~~~~el~~~~~~~ 294 (297)
T 2yv2_A 229 KK---GEFTKPVIAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVE--VAETPFEVPELVRKA 294 (297)
T ss_dssp HT---TSCCSCEEEEESCCC------------------CSHHHHHHHHHTTTCE--EESSGGGHHHHHHHH
T ss_pred Hh---ccCCCCEEEEEeCCCCccccccCCccccccCCCCCHHHHHHHHHHcCCe--EeCCHHHHHHHHHHH
Confidence 32 2258999987554322 11 24478999998 888888776666554
No 73
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=97.87 E-value=4.6e-05 Score=73.94 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhH--hCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 29 ~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~--l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
..++...+++|+++|||+|++..+++.+++.++.+. + + ||+|+||..-.| |.+ ..||.+. +.+++.
T Consensus 96 ~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~~--~-~P~vvKP~~g~g--~~~------s~gv~~v~~~~~l~ 164 (324)
T 1z2n_X 96 MSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQL--I-LPFIVKPENAQG--TFN------AHQMKIVLEQEGID 164 (324)
T ss_dssp HTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTCS--C-SSEEEEESBCSS--SSG------GGEEEEECSGGGGT
T ss_pred HhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcCC--C-CCEEEeeCCCCC--Ccc------ceeeEEEeCHHHHh
Confidence 457888999999999999999999999999887776 4 5 799999975222 211 1467777 765532
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCC-CceEEEEEEecC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDR 151 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~-g~El~vgv~~D~ 151 (422)
. . -..+++|+|+++ +.|+.+.+..+.
T Consensus 165 ~--------~------------~~~~lvqe~i~~~g~~~~v~v~g~~ 191 (324)
T 1z2n_X 165 D--------I------------HFPCLCQHYINHNNKIVKVFCIGNT 191 (324)
T ss_dssp T--------C------------CSSEEEEECCCCTTCEEEEEEETTE
T ss_pred h--------c------------CCCEEEEEccCCCCcEEEEEEECCE
Confidence 1 1 136999999984 789888876443
No 74
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=97.78 E-value=8.8e-05 Score=71.81 Aligned_cols=123 Identities=19% Similarity=0.280 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE-GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~-~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+||++|-||+++....|.+...|+-..-.+-+++++.. -.+.+.++.+.+||++++|++..-+.. +.+..+ .
T Consensus 149 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g-~~~~~~---~ 224 (294)
T 2yv1_A 149 KEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGG-GAEEEA---A 224 (294)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSS-SHHHHH---H
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC-CHHHHH---H
Confidence 46899999999999999999999999988888888888753 348899999999999999998665432 222222 3
Q ss_pred HHHHhcCCCCcEEEEeCCCCH--------------------HHHHHHHHHcCCCcccccCHHHHHHHHHHHh
Q 014588 369 NAAKQVALKVPVVVRLEGTNV--------------------DQGKRILKESGMTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~~~--------------------~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~ 420 (422)
+.+++ ..|||++...|... ..-...|+++|+. .-+++++-..++.++.
T Consensus 225 ~~~~~--~~KPVv~~k~G~~~~~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv~--~~~~~~el~~~~~~~~ 292 (294)
T 2yv1_A 225 KFIEK--MKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAY--VAKNISDIPKLLAGIL 292 (294)
T ss_dssp HHHTT--CSSCEEEEEECC-------------------CCHHHHHHHHHHHTCE--ECSSTTHHHHHHHHHH
T ss_pred HHHHh--CCCCEEEEEecCCCCccccCCchhhhccCCCCCHHHHHHHHHHCCCe--EeCCHHHHHHHHHHHh
Confidence 33333 48999986433211 1124479999998 8888888777766554
No 75
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=97.76 E-value=0.00019 Score=69.24 Aligned_cols=123 Identities=18% Similarity=0.279 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE-GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~-~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+||++|-||+++....|.+...|+-..-.+-++++++. -.+.+.++.+.+||++++|++..-+.. +.+..+...+
T Consensus 143 ~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~-~~~~~~~~~~ 221 (288)
T 2nu8_A 143 KPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG-SAEEEAAAYI 221 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSS-SHHHHHHHHH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC-CHHHHHHHHH
Confidence 46899999999999999999999999987778888887753 348899999999999999998665332 3444555555
Q ss_pred HHHHhcCCCCcEEEEeCCC-C-------------------HHHHHHHHHHcCCCcccccCHHHHHHHHHHH
Q 014588 369 NAAKQVALKVPVVVRLEGT-N-------------------VDQGKRILKESGMTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~-~-------------------~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~ 419 (422)
++ . ..|||++...|. . ...-...|+++|+. +-+++++-..++.+.
T Consensus 222 ~~--~--~~KPVv~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~--~~~~~~el~~~~~~~ 286 (288)
T 2nu8_A 222 KE--H--VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVK--TVRSLADIGEALKTV 286 (288)
T ss_dssp HH--H--CCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCE--ECSSGGGHHHHHHHH
T ss_pred Hh--c--CCCCEEEEEeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCCe--EeCCHHHHHHHHHHH
Confidence 54 2 589999863332 1 11234589999998 888888777666543
No 76
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=97.41 E-value=0.00042 Score=75.55 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
.+|+||++|-||+++....|.+...|+-..-.+-+|+++..+ .+.++++.+.+||++++|++..-.+..... ..+
T Consensus 653 ~~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~Ei~g~~f~----~aA 728 (829)
T 3pff_A 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY----KIC 728 (829)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHH----HHH
T ss_pred CCCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEEecCchHHH----HHH
Confidence 578999999999999999999999998777788888875322 488999999999999999986542211112 222
Q ss_pred HHHHhcCCCCcEEEEeCCCCHH-----------------------HHHHHHHHcCCCcccccCHHHHHHHHHHH
Q 014588 369 NAAKQVALKVPVVVRLEGTNVD-----------------------QGKRILKESGMTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 369 ~~~~~~~~~kpivv~~~g~~~~-----------------------~~~~~L~~~Gip~~vf~~~e~Av~al~~~ 419 (422)
+..++....|||+++..|.... .-...|+++|+. +-+++++-..++.++
T Consensus 729 ~~~~~~~~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi--~v~~~~el~~~~~~~ 800 (829)
T 3pff_A 729 RGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVF--VPRSFDELGEIIQSV 800 (829)
T ss_dssp HHHHTTSCCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCB--CCSSGGGHHHHHHHH
T ss_pred HHHHhccCCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCe--EcCCHHHHHHHHHHH
Confidence 2333212579999874443111 224579999998 777777666655443
No 77
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=97.20 E-value=0.0005 Score=66.90 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=60.8
Q ss_pred HHHHHHHHcCC---CCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHH
Q 014588 34 QGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (422)
Q Consensus 34 ~ak~lL~~~GI---pvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~ 109 (422)
....+|++.|+ |.|+.....+..+ +.+.+ | ||+|+|+-. |+.|+ ||.+. |.+++++..+
T Consensus 120 ~~~~~l~~~gi~~~P~~~~~~~~~~~~---~~~~~--g-~PvVvK~~~--Gs~G~---------GV~lv~~~~~~~~~~~ 182 (309)
T 1i7n_A 120 QMVAIFKTLGGEKFPLIEQTYYPNHRE---MLTLP--T-FPVVVKIGH--AHSGM---------GKVKVENHYDFQDIAS 182 (309)
T ss_dssp HHHHHHHHHCTTTSCBCCCEEESSGGG---GSSCC--C-SSEEEEESS--CSTTT---------TEEEECSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCEEeeCChhh---hhhcc--C-CCEEEEeCC--CCcee---------CeEEECCHHHHHHHHH
Confidence 45677888898 8555544555443 34456 8 899999953 43343 58888 9998887766
Q ss_pred HHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 110 ~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
.+.... ..+++|||++.+..+.+.+..+.
T Consensus 183 ~~~~~~-------------~~~~vQefI~~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 183 VVALTQ-------------TYATAEPFIDAKYDIRVQKIGNN 211 (309)
T ss_dssp HHHHHT-------------CCEEEEECCCEEEEEEEEEETTE
T ss_pred HHhccC-------------CeEEEEeecCCCceEEEEEECCE
Confidence 543221 36889999998888888887554
No 78
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=97.19 E-value=0.0031 Score=64.64 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=83.5
Q ss_pred CeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHH
Q 014588 292 GEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAA 371 (422)
Q Consensus 292 g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~ 371 (422)
|+|+++|-||+++....|.+...|+-....+-++++++ -.+.+.++.+.+||++++|+++.-+ +.+.....+....+
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~-~~~~d~l~~~~~D~~t~~I~l~~E~-i~~~~~f~~~a~~~- 226 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD-VDFAELMEYLADTEEDKAIALYIEG-VRNGKKFMEVAKRV- 226 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCS-SCHHHHHHHHTTCSSCCEEEEEESC-CSCHHHHHHHHHHH-
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCC-CCHHHHHHHHhcCCCCCEEEEEEec-CCCHHHHHHHHHHh-
Confidence 99999999999999999999999998778888888764 3488999999999999999986653 12233332322222
Q ss_pred HhcCCCCcEEEEeCCCCH-----------------HHHHHHHHHcCCCcccccCHHHHHHH
Q 014588 372 KQVALKVPVVVRLEGTNV-----------------DQGKRILKESGMTLITAEDLDDAAEK 415 (422)
Q Consensus 372 ~~~~~~kpivv~~~g~~~-----------------~~~~~~L~~~Gip~~vf~~~e~Av~a 415 (422)
. ..|||++...|... ..-...|++.|+. ..+++++-...
T Consensus 227 ~---~~KPVv~~k~G~~~~g~~aa~~Htgalag~~~~~~AafRqaGv~--~v~~~~El~~~ 282 (457)
T 2csu_A 227 T---KKKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVL--VANTIDEMLSM 282 (457)
T ss_dssp H---HHSCEEEEECC------------------CHHHHHHHHHHTTCE--EESSHHHHHHH
T ss_pred c---CCCCEEEEEcCCCccccchhhcccCccCCcHHHHHHHHHhCCCe--EECCHHHHHHH
Confidence 2 26999987554311 1123368889998 88888765543
No 79
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.13 E-value=0.00045 Score=66.02 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~ 108 (422)
.+++..+++|+ |+|++..+++.+++.++.+.+ | |+|+||.. |+.|+ |=.++. +.+++..++
T Consensus 123 ~dK~~~~~~l~----~~P~t~~~~~~~~~~~~~~~~--~--p~vvKP~~--g~~g~--------Gv~~v~~~~~~l~~~~ 184 (316)
T 1gsa_A 123 NEKLFTAWFSD----LTPETLVTRNKAQLKAFWEKH--S--DIILKPLD--GMGGA--------SIFRVKEGDPNLGVIA 184 (316)
T ss_dssp CTTGGGGGGTT----TSCCEEEESCHHHHHHHHHHH--S--SEEEECSS--CCTTT--------TCEEECTTCTTHHHHH
T ss_pred hhHHHHHhhhh----cCCCeEEeCCHHHHHHHHHHc--C--CEEEEECC--CCCcc--------cEEEecCChHHHHHHH
Confidence 34445556665 999999999999999988888 5 99999965 33343 223344 777777776
Q ss_pred HHHhcccccccccCCCCcccceEEEEeecCC--CceEEEEEEec
Q 014588 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLD 150 (422)
Q Consensus 109 ~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~--g~El~vgv~~D 150 (422)
+.+... + ...+++|+|+++ +.|+.+.+..+
T Consensus 185 ~~~~~~----------~--~~~~lvqe~i~~~~~~~~~v~~~~g 216 (316)
T 1gsa_A 185 ETLTEH----------G--TRYCMAQNYLPAIKDGDKRVLVVDG 216 (316)
T ss_dssp HHHTTT----------T--TSCEEEEECCGGGGGCEEEEEEETT
T ss_pred HHHHhc----------C--CceEEEecccCCCCCCCEEEEEECC
Confidence 654321 1 147999999996 67888777543
No 80
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=96.94 E-value=0.001 Score=65.63 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCC---CCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHH
Q 014588 33 YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA 108 (422)
Q Consensus 33 ~~ak~lL~~~GI---pvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~ 108 (422)
.....+|.+.|+ |.++...+.+..+ +.+.+ | ||+|+|+-. |+.|+ ||.+. |.+++++..
T Consensus 136 ~~~l~~l~~~gi~~~P~~~~t~~~~~~~---~~~~~--g-~PvVvK~~~--Gs~G~---------GV~lve~~~~~~~~~ 198 (344)
T 2p0a_A 136 SQLIKIFHSLGPEKFPLVEQTFFPNHKP---MVTAP--H-FPVVVKLGH--AHAGM---------GKIKVENQLDFQDIT 198 (344)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSSTT---CCCCS--S-SSEEEEESS--CCTTT---------TEEEECSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCEEecCchhh---hhhcc--C-CCEEEEeCC--CCcee---------CeEEECCHHHHHHHH
Confidence 445677788888 8555444554433 34456 8 899999953 43343 58888 998888766
Q ss_pred HHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 109 ~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
+.+.... ..+++|||++.++.+.+.+..+.
T Consensus 199 ~~~~~~~-------------~~~~vQefI~~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 199 SVVAMAK-------------TYATTEAFIDSKYDIRIQKIGSN 228 (344)
T ss_dssp HHHHHHT-------------CCEEEEECCCEEEEEEEEEETTE
T ss_pred HHHhccC-------------CeEEEEeccCCCccEEEEEECCE
Confidence 5443211 36889999997888888887554
No 81
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.89 E-value=0.00011 Score=72.06 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHHHHh
Q 014588 34 QGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML 112 (422)
Q Consensus 34 ~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~~l~ 112 (422)
.-|++|++.|||+|+++. ++|+ ++ + +|+++||.... .|| |+.+. | +++..+++++
T Consensus 101 ~~~~~l~~~Gip~P~~~~---~ee~-----~i--~-~PviVKp~~g~--ggk---------G~~~v~~-eel~~~~~~~- 156 (320)
T 2pbz_A 101 LQDKALEGAGIPRVEVVE---PEDA-----KP--D-ELYFVRIEGPR--GGS---------GHFIVEG-SELEERLSTL- 156 (320)
T ss_dssp HHHHHHHHHTCCBCCBCC---SCCC-----CS--S-CCEEEECC-----------------------C-EECSCCCC---
T ss_pred HHHHHHHHCCcCCCCeeC---HhHc-----Cc--C-CcEEEEECCCC--CCC---------CEEEECh-HHHHHHHHhc-
Confidence 446899999999999873 3443 47 8 89999996432 244 47777 8 7765443222
Q ss_pred cccccccccCCCCcccceEEEEeecCCCceEEEEEEecCCCCCceeeec
Q 014588 113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC 161 (422)
Q Consensus 113 ~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~~f~gpvi~~g 161 (422)
+ ..++||||++ |.+++..+..++.. |-+.+++
T Consensus 157 ------------~---~~~IiEEfI~-g~~~~~~~f~~~~~-g~~e~~~ 188 (320)
T 2pbz_A 157 ------------E---EPYRVERFIP-GVYLYVHFFYSPIL-ERLELLG 188 (320)
T ss_dssp -----------------CCEEEECCC-SCEEEEEEEEETTT-TEEEEEE
T ss_pred ------------C---CCEEEEeeec-eEecceeEEecccc-CceeEEE
Confidence 0 3689999998 78877556666654 4445444
No 82
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=96.83 E-value=0.00091 Score=66.10 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHc-------CCCCCCeeeeCC--HHHHHHHHh--HhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEE
Q 014588 30 IHEYQGAELMAKY-------GINVPKGLAVAS--VDEVKKAIQ--DAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI 98 (422)
Q Consensus 30 L~e~~ak~lL~~~-------GIpvp~~~~~~s--~~ea~~~a~--~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l 98 (422)
.+....-++|.+. |||+|++.++.+ .+++.+..+ .+ | +|+|+||..-.|+.+ -||.+
T Consensus 115 ~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~l--g-~P~VvKP~~g~Gs~s---------~~v~~ 182 (346)
T 2q7d_A 115 LDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGL--T-FPFICKTRVAHGTNS---------HEMAI 182 (346)
T ss_dssp TBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTC--C-SSEEEECSBCSSTTC---------CEEEE
T ss_pred hhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCC--C-CCEEEEecCCCccee---------eeeEE
Confidence 4666777788886 999999999976 345555543 46 7 899999964222211 46777
Q ss_pred C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeecC-CCceEEEEEEecC
Q 014588 99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS-LVNEMYFAIMLDR 151 (422)
Q Consensus 99 ~-~~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~-~g~El~vgv~~D~ 151 (422)
. +.++++.. -..++||||++ +|.|+.+.+..|.
T Consensus 183 v~~~~~l~~~--------------------~~~~lvQefI~~~G~dirv~VvG~~ 217 (346)
T 2q7d_A 183 VFNQEGLNAI--------------------QPPCVVQNFINHNAVLYKVFVVGES 217 (346)
T ss_dssp ECSGGGTTC----------------------CCEEEEECCCCTTEEEEEEEETTE
T ss_pred ecCHHHHHhc--------------------CCCEEEEEeeCCCCeEEEEEEECCE
Confidence 7 87665420 13599999997 4889999997654
No 83
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=96.76 E-value=0.0017 Score=65.52 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=59.7
Q ss_pred HHHHHHHHcCC---CCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHHHHH
Q 014588 34 QGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG 109 (422)
Q Consensus 34 ~ak~lL~~~GI---pvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~a~~ 109 (422)
....+|++.|+ |.++.....+..+ +.+.+ | ||+|+|+-. |+.|+ ||.+. |.++++...+
T Consensus 232 ~~l~ll~~~gi~~iP~t~~t~~~~~~~---~i~~~--g-~PvVvKp~~--GS~G~---------GV~lve~~~~l~~ii~ 294 (422)
T 1pk8_A 232 QMVRLHKKLGTEEFPLIDQTFYPNHKE---MLSST--T-YPVVVKMGH--AHSGM---------GKVKVDNQHDFQDIAS 294 (422)
T ss_dssp HHHHHHHHHCTTTSCBCCCEEESSGGG---CCCCS--S-SSEEEEESS--CCTTT---------TEEEECSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCceEecCchhh---hhhcc--C-CCEEEEeCC--CCcee---------CeEEeCCHHHHHHHHH
Confidence 45667788888 8544444444433 33456 7 899999953 44444 58888 9998887776
Q ss_pred HHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 110 ~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
.+.... ..+++|||++.++.+.+.+..+.
T Consensus 295 ~~~~~~-------------~~~~vQEfI~~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 295 VVALTK-------------TYATAEPFIDAKYDVRVQKIGQN 323 (422)
T ss_dssp HHHHHT-------------SCEEEEECCCEEEEEEEEEETTE
T ss_pred HHhccC-------------ceEEEEeecCCCceEEEEEECCE
Confidence 543221 36899999997888888887554
No 84
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.0013 Score=63.53 Aligned_cols=72 Identities=10% Similarity=0.180 Sum_probs=53.2
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHH
Q 014588 27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE 105 (422)
Q Consensus 27 ~~~L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~ 105 (422)
+..-+++..|++|++ |||+|++.+ ..+ + +|+|+||..-. .|+ ||.+. +
T Consensus 106 ~~~~dK~~~~~~l~~-Gip~p~~~~-----------~~~--~-~P~vvKP~~g~--gs~---------Gv~~v~~----- 154 (305)
T 3df7_A 106 AVTSDKWELYKKLRG-EVQVPQTSL-----------RPL--D-CKFIIKPRTAC--AGE---------GIGFSDE----- 154 (305)
T ss_dssp HHHTSHHHHHHHHTT-TSCCCCEES-----------SCC--S-SSEEEEESSCC---------------CBCCSS-----
T ss_pred HHhcCHHHHHHHHHh-CCCCCCEec-----------ccC--C-CCEEEEeCCCC--CCC---------CEEEEec-----
Confidence 345688899999999 999999985 246 7 89999996422 222 45555 5
Q ss_pred HHHHHHhcccccccccCCCCcccceEEEEeecCCCceEEEEEEecC
Q 014588 106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR 151 (422)
Q Consensus 106 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g~El~vgv~~D~ 151 (422)
. ...+++|+|++ |.|+.+.+..+.
T Consensus 155 ---------~------------~~~~lvEe~I~-G~e~sv~v~~g~ 178 (305)
T 3df7_A 155 ---------V------------PDGHIAQEFIE-GINLSVSLAVGE 178 (305)
T ss_dssp ---------C------------CTTEEEEECCC-SEEEEEEEEESS
T ss_pred ---------C------------CCCEEEEeccC-CcEEEEEEEeCC
Confidence 1 13699999999 899999998753
No 85
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=87.57 E-value=3.8 Score=35.34 Aligned_cols=120 Identities=20% Similarity=0.239 Sum_probs=73.7
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEE--cc-CCCCC----
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN--IF-GGIMK---- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~--i~-~~~~~---- 359 (422)
||+|+... ..+---+.|.+.++|.+ .| +|+---+-.--+.-+.+.+.+..++|+++.. +. |++..
T Consensus 15 ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~-~~-i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~V 92 (156)
T 1c2y_A 15 RFAIVVARFNEFVTRRLMEGALDTFKKYSVN-ED-IDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAV 92 (156)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHTTCC-SC-CEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHH
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCC-Cc-eEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHH
Confidence 78877643 24555567999999987 43 3333222233366777888888899999972 33 44442
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 360 CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
|.+++++|.+..-+ .++||... +..++.+++ +.++|.. .-.--.+|+.+.+++++
T Consensus 93 a~~v~~gl~~v~L~--~~vPV~~GVLT~~~~eQA---~~Rag~~--~~nKG~eaA~aAlem~~ 148 (156)
T 1c2y_A 93 VNSASSGVLSAGLN--SGVPCVFGVLTCDNMDQA---INRAGGK--AGNKGAESALTAIEMAS 148 (156)
T ss_dssp HHHHHHHHHHHHHH--HTSCEEEEEECCSSHHHH---HHHEEET--TEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHH---HHHcCCc--ccchHHHHHHHHHHHHH
Confidence 45566777776544 48999876 544455544 4445543 33345667777666543
No 86
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=86.71 E-value=3.5 Score=37.52 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=66.2
Q ss_pred eEEEEEcCccHHHH--HHHHHHHCCCC--------------CCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 293 EIGCMVNGAGLAMA--TMDIIKLHGGT--------------PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 293 ~vaiitngGG~gv~--~~D~l~~~G~~--------------~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
++.+||-||+.|+| +++.+.+.|+. +.|++.-.--...-.-++.+-.-. .|++++ ++|+
T Consensus 41 g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~----sda~I~-lpGG 115 (216)
T 1ydh_A 41 KIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQE----AEAFIA-LPGG 115 (216)
T ss_dssp TCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCCSEEEEESSHHHHHHHHHHH----CSEEEE-CSCS
T ss_pred CCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccccCCCCcccccCCHHHHHHHHHHh----CCEEEE-eCCC
Confidence 56778777755777 55888888873 233321000011112233333323 356554 7787
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEEe-CCCCHHHH---HHHHHHcCC-------CcccccCHHHHHHHHHH
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVRL-EGTNVDQG---KRILKESGM-------TLITAEDLDDAAEKAVK 418 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~~-~g~~~~~~---~~~L~~~Gi-------p~~vf~~~e~Av~al~~ 418 (422)
....+++.+.+.-..-.. ++|||++.- .|- ...- .+.+.+.|. -+++.+|++++++.+..
T Consensus 116 ~GTLdElfE~lt~~qlg~-~~kPvvll~~~gf-w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~ 186 (216)
T 1ydh_A 116 YGTMEELLEMITWSQLGI-HKKTVGLLNVDGY-YNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEE 186 (216)
T ss_dssp HHHHHHHHHHHHHHHHTS-CCCEEEEECGGGT-THHHHHHHHHHHHTTSSCHHHHTTEEEESSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcc-cCCCEEEecCCcc-chHHHHHHHHHHHCCCCChHHcCeEEEeCCHHHHHHHHHH
Confidence 766778777664332222 589998763 332 2222 234455554 24588999999998854
No 87
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=86.18 E-value=5.2 Score=34.53 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=74.8
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCC-CCCCCe--eeccCCCCHHHHHHHHHHHHcCCCccEEEEE---ccCCCCC-
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHG-GTPANF--LDVGGNASEGQVVEAFKILTSDEKVKAILVN---IFGGIMK- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G-~~~~NP--lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~---i~~~~~~- 359 (422)
||+|+..- -.+---+.|.+.++| .+..|. +.+.|... +.-+.+.+.+..++|+|+.. +-|++..
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafE---iP~aa~~la~~~~yDavIaLG~VIrG~T~Hf 90 (156)
T 3nq4_A 14 RVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYE---LPLATEALAKSGKYDAVVALGTVIRGGTAHF 90 (156)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTT---HHHHHHHHHHHCSCSEEEEEEEEECCSSTHH
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHH---HHHHHHHHHhcCCCCEEEEeeeeecCCchHH
Confidence 77777642 245556779999999 876655 33444432 44666777777889999972 3344442
Q ss_pred ---hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 360 ---CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 360 ---~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
|.+++++|.+..-+ .++||... +..++.+++ ++++|.- .-.--.+|+.+.+++++
T Consensus 91 d~Va~~v~~Gl~~v~L~--~~vPV~~GVLT~~~~eQA---~~Rag~~--~~nKG~eaA~aalem~~ 149 (156)
T 3nq4_A 91 EYVAGGASNGLASVAQD--SGVPVAFGVLTTESIEQA---IERAGTK--AGNKGAEAALTALEMIN 149 (156)
T ss_dssp HHHHHHHHHHHHHHHHH--HCCCEEEEEEEESCHHHH---HHHBTST--TCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--cCCCEEEEEeCCCCHHHH---HHHhCCc--ccccHHHHHHHHHHHHH
Confidence 45566777776544 58999875 444455554 4556654 34446677777766653
No 88
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=84.41 E-value=5 Score=34.56 Aligned_cols=119 Identities=20% Similarity=0.329 Sum_probs=74.5
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCe--eeccCCCCHHHHHHHHHHHHcCCCccEEEEE---ccCCCCC--
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANF--LDVGGNASEGQVVEAFKILTSDEKVKAILVN---IFGGIMK-- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NP--lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~---i~~~~~~-- 359 (422)
||+|+... ..+---+.|.+.++|.+..|. +.+.|. --+.-+.+.+.+..++|+++.. +-|++..
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa---fEiP~aa~~la~~~~yDavIalG~VIrG~T~Hfd 90 (154)
T 1hqk_A 14 RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGS---WEIPVAAGELARKEDIDAVIAIGVLIRGATPHFD 90 (154)
T ss_dssp CEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSG---GGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHHH
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---HHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHH
Confidence 78877643 245556779999999876544 233343 2255677888888899999972 3345442
Q ss_pred --hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 360 --CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 360 --~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
|.+++++|.+..-+ .++||... +...+.+++. .++|.. .-+--.+|+.+.+++++
T Consensus 91 ~Va~~vs~gl~~v~l~--~~vPV~~GVLT~~~~eQA~---~Rag~~--~~nkG~eaA~aalem~~ 148 (154)
T 1hqk_A 91 YIASEVSKGLANLSLE--LRKPITFGVITADTLEQAI---ERAGTK--HGNKGWEAALSAIEMAN 148 (154)
T ss_dssp HHHHHHHHHHHHHHHH--HTSCEEEEEEEESSHHHHH---HHEEET--TEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHH---HHhccc--ccchHHHHHHHHHHHHH
Confidence 45566777776544 48999865 4334455543 445554 33446677777666653
No 89
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=83.83 E-value=4.6 Score=34.75 Aligned_cols=119 Identities=26% Similarity=0.355 Sum_probs=74.4
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCe--eeccCCCCHHHHHHHHHHHHcCCCccEEEEE---ccCCCCC--
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANF--LDVGGNASEGQVVEAFKILTSDEKVKAILVN---IFGGIMK-- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NP--lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~---i~~~~~~-- 359 (422)
||+|+..- ..+---+.|.+.++|.+..|. +.+.|.. -+.-+.+.+.+..++|+++.. +-|++..
T Consensus 14 ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGaf---EiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd 90 (154)
T 1rvv_A 14 KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAF---EIPFAAKKMAETKKYDAIITLGTVIRGATTHYD 90 (154)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGG---GHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHH
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHH---HHHHHHHHHHhcCCCCEEEEeeeeecCCchHHH
Confidence 78877643 245556779999999876544 2333432 255667888888899999972 3345442
Q ss_pred --hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 360 --CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 360 --~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
|.+++++|.+..-+ .++||... +...+.+++ +.++|.. .-+--.+|+.+.+++++
T Consensus 91 ~V~~~vs~Gl~~v~l~--~~vPV~~GVLT~~~~eQA---~~Rag~~--~~nkG~eaA~aalem~~ 148 (154)
T 1rvv_A 91 YVCNEAAKGIAQAANT--TGVPVIFGIVTTENIEQA---IERAGTK--AGNKGVDCAVSAIEMAN 148 (154)
T ss_dssp HHHHHHHHHHHHHHHH--HCSCEEEEEEEESSHHHH---HHTEEET--TEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--hCCCEEEEecCCCCHHHH---HHHhccc--ccchHHHHHHHHHHHHH
Confidence 45566777777544 58999865 433345554 3445554 33446677777766653
No 90
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=81.70 E-value=8.7 Score=33.19 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=74.3
Q ss_pred eEEEEEcC------ccHHHHHHHHHHH-CCCCCCC--eeeccCCCCHHHHHHHHHHHHcCCCccEEEEE---ccCCCCC-
Q 014588 293 EIGCMVNG------AGLAMATMDIIKL-HGGTPAN--FLDVGGNASEGQVVEAFKILTSDEKVKAILVN---IFGGIMK- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~-~G~~~~N--PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~---i~~~~~~- 359 (422)
||+|+..- ..+---+.|.+.+ +|.+..| -+.+.|.. -+.-+.+.+.+..++|+|+.. +-|++..
T Consensus 19 riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGaf---EiP~aa~~la~~~~yDavIaLG~VIrG~T~Hf 95 (159)
T 1kz1_A 19 RILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSW---ELPQGIRASIARNTYDAVIGIGVLIKGSTMHF 95 (159)
T ss_dssp CEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGG---GHHHHHHHHHHHSCCSEEEEEEEEECCSSSHH
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHH---HHHHHHHHHHhcCCCCEEEEecccccCCchHH
Confidence 78888654 2455556799999 8987666 34444432 245566777777889999972 3355442
Q ss_pred ---hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 360 ---CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 360 ---~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
|.+++++|.+..-+ .++||... +..++.+++. +++|.. ..-.--.+|+.+.+++++
T Consensus 96 d~Va~~v~~Gl~~v~L~--~~vPV~~GVLT~~~~eQA~---~Rag~~-~~~nKG~eaA~aalem~~ 155 (159)
T 1kz1_A 96 EYISEAVVHGLMRVGLD--SGVPVILGLLTVLNEEQAL---YRAGLN-GGHNHGNDWGSAAVEMGL 155 (159)
T ss_dssp HHHHHHHHHHHHHHHHH--HCCCEEEEEEEESSHHHHH---HHBTCT-TCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHH---HHhCCc-cccchHHHHHHHHHHHHH
Confidence 45566777776544 58999875 4444455544 445642 013446677777776653
No 91
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=79.58 E-value=11 Score=32.49 Aligned_cols=118 Identities=12% Similarity=0.067 Sum_probs=68.9
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcC-----CCccEEEEE---ccCCCC
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSD-----EKVKAILVN---IFGGIM 358 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d-----~~vd~ilv~---i~~~~~ 358 (422)
||+|+..- -.+---+.|.+.++| .| +|+---+-.--+.-+++.+.+. .++|+|+.. +-|++.
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~~G---~~-i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~ 89 (157)
T 2i0f_A 14 HLLIVEARFYDDLADALLDGAKAALDEAG---AT-YDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETY 89 (157)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHTT---CE-EEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSS
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcC---CC-eEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCch
Confidence 67777643 244555678999999 23 2432111112244555666665 789999972 335554
Q ss_pred C----hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 359 K----CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 359 ~----~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
. |.+++++|.+..-+ .++||... +..++.+++.+ ++|.. .-.--.+|+.+.+++++
T Consensus 90 Hfd~Va~~v~~gl~~vsl~--~~vPV~~GVLT~~~~eQA~~---Rag~~--~~nkG~eaA~aAlem~~ 150 (157)
T 2i0f_A 90 HFDIVSNESCRALTDLSVE--ESIAIGNGILTVENEEQAWV---HARRE--DKDKGGFAARAALTMIG 150 (157)
T ss_dssp TTHHHHHHHHHHHHHHHHH--TTCCEEEEEEEESSHHHHHH---HHCTT--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHHH---HhCcc--ccccHHHHHHHHHHHHH
Confidence 3 45566777776555 58999875 44445565544 33532 23346677777766653
No 92
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=78.40 E-value=0.34 Score=46.79 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHH------------HHHH-HHhHhCCCCCeEEEEEee
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVD------------EVKK-AIQDAFPDHKELVVKSQI 78 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~------------ea~~-~a~~l~~g~~PvVlK~~~ 78 (422)
.+...+.++|+++|||+|++.++.... ++.. ..+.+ + +|+|.||..
T Consensus 96 ~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l--~-kPfVeKPv~ 154 (330)
T 3t7a_A 96 QDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVF--Q-KPFVEKPVS 154 (330)
T ss_dssp TBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEE--E-SSEEEEESB
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchhhhhccccc--c-CCeeEcccc
Confidence 345678999999999999999987521 1111 23556 7 899999953
No 93
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=75.15 E-value=19 Score=31.38 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=72.8
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCee--eccCCCCHHHHHHHHHHHHc-----CCCccEEEEE---ccCC
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANFL--DVGGNASEGQVVEAFKILTS-----DEKVKAILVN---IFGG 356 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NPl--Dl~g~~~~~~~~~al~~ll~-----d~~vd~ilv~---i~~~ 356 (422)
||+|+..- -.+---+.|.+.++|.+..|.. .+.|.. | +.-+++.|.+ ...+|+|+.. +-|+
T Consensus 18 ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGaf--E-iP~aak~la~~~~~~~~~yDavIaLG~VIrG~ 94 (168)
T 1ejb_A 18 RVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSY--E-LPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGS 94 (168)
T ss_dssp CEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGG--G-HHHHHHHHHHHHHHTTCCCSEEEEEEEEECCS
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHH--H-HHHHHHHHHhhccccCCCcCEEEEecccccCC
Confidence 78888643 2455567799999998766654 344432 2 4445566655 6789999972 3345
Q ss_pred CCC----hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCc--ccccCHHHHHHHHHHHh
Q 014588 357 IMK----CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTL--ITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 357 ~~~----~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~--~vf~~~e~Av~al~~~~ 420 (422)
+.. |.+++++|.+..-+ .++||... +...+.+++. .++|..- ..-+--.+|+.+.++++
T Consensus 95 T~Hfd~Va~~vs~Gl~~vsL~--~~vPV~~GVLT~~~~eQA~---~Rag~~~~~~~~nkG~eaA~aAlem~ 160 (168)
T 1ejb_A 95 TMHFEYISDSTTHALMNLQEK--VDMPVIFGLLTCMTEEQAL---ARAGIDEAHSMHNHGEDWGAAAVEMA 160 (168)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH--HTSCBCCEEEEESSHHHHH---HHBTCSTTCCSCBHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh--cCCCEEEEEecCCCHHHHH---HhcCccccccccchHHHHHHHHHHHH
Confidence 442 45566777777544 48999854 5444455543 4456630 01234567777777665
No 94
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=73.60 E-value=31 Score=32.45 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=60.2
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
=|.| -|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++.
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~---~grvpviaGvg~~~t~~ai 85 (294)
T 2ehh_A 11 TPFK-EGEVDYEALGNLIEFHVD-NGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRA---AGRIKVIAGTGGNATHEAV 85 (294)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHT-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSEEEEECCCSCHHHHH
T ss_pred cCcC-CCCcCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEecCCCCHHHHH
Confidence 4777 788999999999999986 589999974333211 2233 233333332 2368999888877666665
Q ss_pred HH---HHHcC-------CCcccccCHHHHHHHHHHHhh
Q 014588 394 RI---LKESG-------MTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 394 ~~---L~~~G-------ip~~vf~~~e~Av~al~~~~~ 421 (422)
+. .++.| -|++.-.+.+..++.+.+++.
T Consensus 86 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 123 (294)
T 2ehh_A 86 HLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQ 123 (294)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 53 34455 262222466666666655543
No 95
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=73.11 E-value=28 Score=30.79 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=61.9
Q ss_pred eEEEEEcCccHHHH--HHHHHHHCCCC-------------CCCe-eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 293 EIGCMVNGAGLAMA--TMDIIKLHGGT-------------PANF-LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 293 ~vaiitngGG~gv~--~~D~l~~~G~~-------------~~NP-lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
++.++|-||..|+| ++|.+.+.|+. ..|| +|..-....-.-++.+-+-. .|+++ .++|+
T Consensus 44 g~~lv~GGG~~GlM~a~~~ga~~~GG~viGv~p~~l~~~e~~~~~~~~~i~~~~~~~Rk~~m~~~----sda~I-alPGG 118 (189)
T 3sbx_A 44 GWTLVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVMEDR----ANAFI-TLPGG 118 (189)
T ss_dssp TCEEEECCBCSHHHHHHHHHHHTTTCCEEEEEETTTTTTTTBCTTCSEEEEESSHHHHHHHHHHH----CSEEE-ECSCC
T ss_pred CCEEEECCCccCHHHHHHHHHHHcCCcEEEEcCchhhhcccCCCCCCeeEEcCCHHHHHHHHHHH----CCEEE-EeCCC
Confidence 56777766533555 55888888873 1222 11110001111233332222 35555 47787
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEEeC-CCCHHHHH---HHHHHcCC-------CcccccCHHHHHHHH
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVRLE-GTNVDQGK---RILKESGM-------TLITAEDLDDAAEKA 416 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~~~-g~~~~~~~---~~L~~~Gi-------p~~vf~~~e~Av~al 416 (422)
....+++.+.+.-..-. .++|||++.-. |- ...-. +.+.+.|. -+++.+|++++++.+
T Consensus 119 ~GTLdElfe~lt~~qlg-~~~kPvvlln~~gf-w~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~ee~~~~l 187 (189)
T 3sbx_A 119 VGTLDELLDVWTEGYLG-MHDKSIVVLDPWGH-FDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQAC 187 (189)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCCCEEEECTTCT-THHHHHHHHHHHHTTSSCHHHHHHEEEESSHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhc-ccCCCEEEecCCcc-chHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHh
Confidence 76677777766433212 15799987633 43 23222 34445552 145788999998865
No 96
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=72.68 E-value=16 Score=33.06 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=61.9
Q ss_pred eEEEEEcCccHHHH--HHHHHHHCCCCC--------------CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 293 EIGCMVNGAGLAMA--TMDIIKLHGGTP--------------ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 293 ~vaiitngGG~gv~--~~D~l~~~G~~~--------------~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
++.|+|-||..|+| +++.+.+.|+.. .|+++-.-....=.-++.+ +.. ..|++++ ++|+
T Consensus 45 G~~vVsGGg~~GiM~aa~~gAl~~GG~tiGVlP~~~~~~e~~~~~~~~~~~~~~f~~Rk~~--~~~--~sda~Vv-lpGG 119 (215)
T 2a33_A 45 NIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAE--MAK--HSDAFIA-LPGG 119 (215)
T ss_dssp TCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEESSCC--------CCEEEEESSHHHHHHH--HHH--TCSEEEE-CSCC
T ss_pred CCEEEECCChhhHhHHHHHHHHHcCCcEEEEcchHhcchhhccCCCCceeecCCHHHHHHH--HHH--hCCEEEE-eCCC
Confidence 57777766634666 558888888731 1221100000101112222 222 2467665 6777
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEEe-CCCCHHHHH---HHHHHcCC-------CcccccCHHHHHHHHHH
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVRL-EGTNVDQGK---RILKESGM-------TLITAEDLDDAAEKAVK 418 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~~-~g~~~~~~~---~~L~~~Gi-------p~~vf~~~e~Av~al~~ 418 (422)
....+++.+.+.-..-. .++|||++.- .|- ...-. +.+.+.|. .+++.+||+++++.+..
T Consensus 120 ~GTLdElfE~lt~~qlg-~~~kPvvll~~~g~-w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~ 190 (215)
T 2a33_A 120 YGTLEELLEVITWAQLG-IHDKPVGLLNVDGY-YNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLEE 190 (215)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCCCEEEECGGGT-THHHHHHHHHHHHHTSSCHHHHTTEEEESSHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHhC-CCCCCeEEecCcch-hHHHHHHHHHHHHcCCCCHHHCCeEEEeCCHHHHHHHHHH
Confidence 66677777765433212 2589998763 332 22222 23344443 24588899999988753
No 97
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=72.27 E-value=44 Score=31.62 Aligned_cols=101 Identities=9% Similarity=0.033 Sum_probs=62.3
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHH-hcCCCCcEEEEeCCCCHHHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAK-QVALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~-~~~~~kpivv~~~g~~~~~~~~ 394 (422)
--|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++- ..+++... ..+...||++..++++..++.+
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~gi~v~GttGE~~~Lt~~Er-~~v~~~~~~~~~grvpviaGvg~~~t~~ai~ 101 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVD-QGCDGLVVSGTTGESPTTTDGEK-IELLRAVLEAVGDRARVIAGAGTYDTAHSIR 101 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTTSEEEEECCCSCHHHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccchhhCCHHHH-HHHHHHHHHHhCCCCeEEEeCCCCCHHHHHH
Confidence 456666788999999999999987 589999975433322 22332 22333222 2224689999887776666655
Q ss_pred ---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 395 ---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 ---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
..++.|. |++.-.+.+..++.+.+++.
T Consensus 102 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 138 (304)
T 3l21_A 102 LAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVAD 138 (304)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 3444553 63333466776666666654
No 98
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=71.99 E-value=27 Score=33.17 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=60.9
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQG 392 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~ 392 (422)
-=|.| -|..+.+.+.+-++.+.+. ++|+++++-..| .. ..++ +.+..++.. +...||++..++++..++
T Consensus 22 vTPf~-dg~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~---~grvpViaGvg~~st~~a 96 (306)
T 1o5k_A 22 VTPFK-NGELDLESYERLVRYQLEN-GVNALIVLGTTGESPTVNEDEREKLVSRTLEIV---DGKIPVIVGAGTNSTEKT 96 (306)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHHT-TCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHH---TTSSCEEEECCCSCHHHH
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHHc-CCCEEEeCccccchhhCCHHHHHHHHHHHHHHh---CCCCeEEEcCCCccHHHH
Confidence 45788 8899999999999999874 899999743322 11 2233 233333333 236899988888766666
Q ss_pred HHH---HHHcC-------CCcccccCHHHHHHHHHHHhh
Q 014588 393 KRI---LKESG-------MTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 393 ~~~---L~~~G-------ip~~vf~~~e~Av~al~~~~~ 421 (422)
.+. .++.| -|++.-.+.+..++-+.+++.
T Consensus 97 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 135 (306)
T 1o5k_A 97 LKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISE 135 (306)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 553 33445 252222366666666655554
No 99
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=71.15 E-value=56 Score=30.80 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=59.7
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
-|.|=-|..+.+.+.+-++.+.+. ++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++.
T Consensus 22 TPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~---~grvpViaGvg~~~t~~ai 97 (301)
T 1xky_A 22 TPFDINGNIDFAKTTKLVNYLIDN-GTTAIVVGGTTGESPTLTSEEKVALYRHVVSVV---DKRVPVIAGTGSNNTHASI 97 (301)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHT-TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSCEEEECCCSCHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCceEEeCCCCCCHHHHH
Confidence 355545788889999999999874 89999974333211 2233 233333333 2468999888887666665
Q ss_pred HH---HHHcC-------CCcccccCHHHHHHHHHHHhh
Q 014588 394 RI---LKESG-------MTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 394 ~~---L~~~G-------ip~~vf~~~e~Av~al~~~~~ 421 (422)
+. .++.| -|++.-.+.+..++-+.+++.
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 135 (301)
T 1xky_A 98 DLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAE 135 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 53 44455 262222366666666655554
No 100
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=71.08 E-value=39 Score=28.75 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=69.7
Q ss_pred CCeEEEEEcCc---cHH-HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 291 DGEIGCMVNGA---GLA-MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 291 ~g~vaiitngG---G~g-v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
+++|.+.|.+| -.| .+.+.+++..|..+ +|++.+.+.+.+.+++.. -+.|.|.+..... ........
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eV---i~lG~~~p~e~lv~aa~~----~~~diV~lS~~~~--~~~~~~~~ 88 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEV---VYTGLRQTPEQVAMAAVQ----EDVDVIGVSILNG--AHLHLMKR 88 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEE---ECCCSBCCHHHHHHHHHH----TTCSEEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEE---EECCCCCCHHHHHHHHHh----cCCCEEEEEeech--hhHHHHHH
Confidence 34666666544 123 45567888888764 567777787765554432 3567777644432 34556677
Q ss_pred HHHHHHhcCC-CCcEEEEeCCCCHHHHHHHHHHcCCCccccc---CHHHHHHHHHHHh
Q 014588 367 IVNAAKQVAL-KVPVVVRLEGTNVDQGKRILKESGMTLITAE---DLDDAAEKAVKAI 420 (422)
Q Consensus 367 i~~~~~~~~~-~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~---~~e~Av~al~~~~ 420 (422)
+++.+++.+. +.||++ ||.-..+....+++.|+.- +|. ++++++..+..+.
T Consensus 89 ~i~~L~~~g~~~i~v~v--GG~~~~~~~~~l~~~G~d~-v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 89 LMAKLRELGADDIPVVL--GGTIPIPDLEPLRSLGIRE-IFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp HHHHHHHTTCTTSCEEE--EECCCHHHHHHHHHTTCCE-EECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEE--eCCCchhcHHHHHHCCCcE-EECCCCCHHHHHHHHHHHH
Confidence 7777776432 345544 4543334445688899971 242 3467887776654
No 101
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=70.23 E-value=9.3 Score=34.67 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=61.3
Q ss_pred eEEEEEcCccHHHHHH--HHHHHCCCC------------CCCeeeccCCCCHHHH--HHHHHHHHcCCCccEEEEEccCC
Q 014588 293 EIGCMVNGAGLAMATM--DIIKLHGGT------------PANFLDVGGNASEGQV--VEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 293 ~vaiitngGG~gv~~~--D~l~~~G~~------------~~NPlDl~g~~~~~~~--~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
++.++|-|| .|+|.+ +.+.+.|+. ..||. ++-......+ ++.+ +.+ ..|++++ ++|+
T Consensus 69 g~~lVsGGg-~GiM~aa~~gAl~~gG~~iGV~~~~P~~~~~~~~-~t~~~~~~~f~~Rk~~--m~~--~sda~Iv-lpGG 141 (217)
T 1wek_A 69 GFGVVTGGG-PGVMEAVNRGAYEAGGVSVGLNIELPHEQKPNPY-QTHALSLRYFFVRKVL--FVR--YAVGFVF-LPGG 141 (217)
T ss_dssp TCEEEECSC-SHHHHHHHHHHHHTTCCEEEEEECCTTCCCCCSC-CSEEEEESCHHHHHHH--HHH--TEEEEEE-CSCC
T ss_pred CCEEEeCCh-hhHHHHHHHHHHHcCCCEEEEeeCCcchhhcccc-CCcCcccCCHHHHHHH--HHH--hCCEEEE-eCCC
Confidence 466776544 888855 777777763 13331 1000111112 2222 222 2366665 6777
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH---HHHHHcCC-------CcccccCHHHHHHHHHH
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGK---RILKESGM-------TLITAEDLDDAAEKAVK 418 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~---~~L~~~Gi-------p~~vf~~~e~Av~al~~ 418 (422)
....+++.+.+.-..-...++|||++.-.+ ....-. +.+.+.|. -+++.+||+++++.+..
T Consensus 142 ~GTL~El~e~lt~~qlg~~~~kPvvll~~~-~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~~ 212 (217)
T 1wek_A 142 FGTLDELSEVLVLLQTEKVHRFPVFLLDRG-YWEGLVRWLAFLRDQKAVGPEDLQLFRLTDEPEEVVQALKA 212 (217)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCEEEECHH-HHHHHHHHHHHHHHTTSSCTTGGGGSEEESCHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhhCCCCCCCEEEeCcc-cchhHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 666677766654322111146999876222 222222 44555553 13588899999998754
No 102
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=69.47 E-value=18 Score=35.45 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCeEEEEEcCccHHH-------HHHHHHHHCCCCCC---Ce---eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC
Q 014588 291 DGEIGCMVNGAGLAM-------ATMDIIKLHGGTPA---NF---LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (422)
Q Consensus 291 ~g~vaiitngGG~gv-------~~~D~l~~~G~~~~---NP---lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~ 357 (422)
+.+|+|++.|+|... .+...++..|+++. |- -....+.+.++. +-|..++.||+||+|+....| .
T Consensus 43 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra-~dL~~af~Dp~i~aI~~~rGG-y 120 (371)
T 3tla_A 43 GDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERA-QEFNELVYNPDITCIMSTIGG-D 120 (371)
T ss_dssp TCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHH-HHHHHHHTCTTEEEEEESCCC-S
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHH-HHHHHHhhCCCCCEEEEcccc-c
Confidence 339999999998742 45678889998641 11 112222333343 445556689999999964433 2
Q ss_pred CChHHHHHHH-HHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCH
Q 014588 358 MKCDVIASGI-VNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDL 409 (422)
Q Consensus 358 ~~~~~~a~~i-~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~ 409 (422)
. +..+...| -+..++ .+|+++- .... ..--..++.+.|++ +|-.|
T Consensus 121 g-a~rlLp~LD~~~i~~--~PK~fiG-ySDi-TaL~~ai~~k~Gl~--T~hGP 166 (371)
T 3tla_A 121 N-SNSLLPFLDYDAIIA--NPKIIIG-YSDT-TALLAGIYAKTGLI--TFYGP 166 (371)
T ss_dssp C-GGGGGGGSCHHHHHH--SCCEEEE-CGGG-HHHHHHHHHHHCBC--EEECC
T ss_pred c-HHHHHhhcChhhHHh--CCcEEEE-echH-HHHHHHHHHHcCCE--EEECc
Confidence 2 11111111 122333 3564432 2111 11123356678988 76544
No 103
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=68.38 E-value=32 Score=32.25 Aligned_cols=97 Identities=10% Similarity=0.108 Sum_probs=59.9
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQG 392 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~ 392 (422)
--|.| -|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~---~gr~pviaGvg~~~t~~a 84 (289)
T 2yxg_A 10 ITPFK-NKEVDFDGLEENINFLIE-NGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVV---NGRVQVIAGAGSNCTEEA 84 (289)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSEEEEECCCSSHHHH
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEeCCCCCHHHH
Confidence 35788 889999999999999987 589999974333222 2233 233333332 236899988887766666
Q ss_pred HHH---HHHcC-------CCcccccCHHHHHHHHHHHh
Q 014588 393 KRI---LKESG-------MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 393 ~~~---L~~~G-------ip~~vf~~~e~Av~al~~~~ 420 (422)
.+. .++.| -|++.-.+.+..++.+.+++
T Consensus 85 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia 122 (289)
T 2yxg_A 85 IELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVA 122 (289)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 543 34445 26222246666666655554
No 104
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=68.07 E-value=56 Score=30.81 Aligned_cols=97 Identities=6% Similarity=0.056 Sum_probs=59.3
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
=|.|=-|..+.+.+.+-++.+.+. ++|+++++-..| .. ..++ +.+..++.. +...||++..++++..++.
T Consensus 26 TPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~---~grvpviaGvg~~st~~ai 101 (304)
T 3cpr_A 26 TPFTESGDIDIAAGREVAAYLVDK-GLDSLVLAGTTGESPTTTAAEKLELLKAVREEV---GDRAKLIAGVGTNNTRTSV 101 (304)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHT-TCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHH---TTTSEEEEECCCSCHHHHH
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEecCCCCCHHHHH
Confidence 455556888999999999999875 899999754332 21 2233 233333333 2368999888887666665
Q ss_pred HH---HHHcC-------CCcccccCHHHHHHHHHHHh
Q 014588 394 RI---LKESG-------MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 394 ~~---L~~~G-------ip~~vf~~~e~Av~al~~~~ 420 (422)
+. .++.| -|++.-.+.+..++.+.+++
T Consensus 102 ~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia 138 (304)
T 3cpr_A 102 ELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIA 138 (304)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 53 34455 26222246666666655554
No 105
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=67.11 E-value=61 Score=30.43 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=60.5
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
=|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++.
T Consensus 17 TPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~---~grvpviaGvg~~~t~~ai 92 (297)
T 3flu_A 17 TPMNQDGSIHYEQLRDLIDWHIE-NGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHV---AKRVPVIAGTGANNTVEAI 92 (297)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSCEEEECCCSSHHHHH
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHh---CCCCcEEEeCCCcCHHHHH
Confidence 45665688888999999999986 689999975433322 2233 333333333 2468999988877666665
Q ss_pred H---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 394 R---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 394 ~---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
+ ..++.|. |++.-.+.+..++.+.+++.
T Consensus 93 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~ 130 (297)
T 3flu_A 93 ALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAE 130 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 5 3445552 63333466666666655543
No 106
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=67.08 E-value=62 Score=30.30 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=59.8
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHH
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~ 394 (422)
|.|=-|..+.+.+.+-++.+.+. ++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++.+
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~---~gr~pviaGvg~~~t~~ai~ 87 (292)
T 2ojp_A 12 PMDEKGNVCRASLKKLIDYHVAS-GTSAIVSVGTTGESATLNHDEHADVVMMTLDLA---DGRIPVIAGTGANATAEAIS 87 (292)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHH-TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSCEEEECCCSSHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccchhhCCHHHHHHHHHHHHHHh---CCCCcEEEecCCccHHHHHH
Confidence 45445788889999999999874 89999975433322 2233 233333332 23689998888877777766
Q ss_pred HHHH---cC-------CCcccccCHHHHHHHHHHHhh
Q 014588 395 ILKE---SG-------MTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 ~L~~---~G-------ip~~vf~~~e~Av~al~~~~~ 421 (422)
..+. .| -|++.-.+.+..++.+.+++.
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~ 124 (292)
T 2ojp_A 88 LTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAE 124 (292)
T ss_dssp HHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 5443 34 262222466666666666554
No 107
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=67.08 E-value=3.8 Score=36.72 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=59.3
Q ss_pred CeEEEEEcCccHHHHHH--HHHHHCCCC---------CCCee-eccCCC-CHHHHHHHHHHHHcCCCccEEEEEccCCCC
Q 014588 292 GEIGCMVNGAGLAMATM--DIIKLHGGT---------PANFL-DVGGNA-SEGQVVEAFKILTSDEKVKAILVNIFGGIM 358 (422)
Q Consensus 292 g~vaiitngGG~gv~~~--D~l~~~G~~---------~~NPl-Dl~g~~-~~~~~~~al~~ll~d~~vd~ilv~i~~~~~ 358 (422)
.++.|+| ||+.|+|.+ +.+.+.|+. ..|+. |+.-.. ..-.-++.+ +.+ ..|++++ ++++..
T Consensus 57 ~G~~vVs-Gg~~GiM~aa~~gAl~~GG~~iGVlP~e~~~~~~~~~~~~~~~~f~~Rk~~--m~~--~sda~Iv-lpGG~G 130 (195)
T 1rcu_A 57 KGYLVFN-GGRDGVMELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQMRSFV--LLR--NADVVVS-IGGEIG 130 (195)
T ss_dssp TTCEEEE-CCSSHHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHH--HHT--TCSEEEE-ESCCHH
T ss_pred CCCEEEe-CCHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCcceeeecCCCHHHHHHH--HHH--hCCEEEE-ecCCCc
Confidence 3577888 788998855 777777863 12332 211000 001112222 222 3467665 566644
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcC-C-------CcccccCHHHHHHHHHH
Q 014588 359 KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESG-M-------TLITAEDLDDAAEKAVK 418 (422)
Q Consensus 359 ~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~G-i-------p~~vf~~~e~Av~al~~ 418 (422)
..+++.+.+ . .+|||++..+........+.+.+.| . -+++.+||+++++.+..
T Consensus 131 TL~E~~eal----~---~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~ 191 (195)
T 1rcu_A 131 TAIEILGAY----A---LGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191 (195)
T ss_dssp HHHHHHHHH----H---TTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHH----h---cCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 444444433 2 3799987733222222222222344 1 24588899999998754
No 108
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=66.54 E-value=16 Score=32.29 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=61.9
Q ss_pred eEEEEEcCc--cHHHHHHHHHHHCCCCC-------------CCe-eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 293 EIGCMVNGA--GLAMATMDIIKLHGGTP-------------ANF-LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 293 ~vaiitngG--G~gv~~~D~l~~~G~~~-------------~NP-lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
++.++|-|| |.--.+++.+.+.|+.. .|+ ++-.-....-..++.+-.-+ .|++++ ++|+
T Consensus 33 g~~lV~GGg~~GiM~aa~~gA~~~gG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~----sda~Iv-lPGG 107 (191)
T 1t35_A 33 GIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSEL----ADGFIS-MPGG 107 (191)
T ss_dssp TCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHHHHTTCCCSEEEEESHHHHHHHHHHHH----CSEEEE-CSCC
T ss_pred CCEEEECCCcccHHHHHHHHHHHcCCeEEEEeCchhcccccccCCCCccccCCCHHHHHHHHHHH----CCEEEE-eCCC
Confidence 466777665 44444568888888731 222 11100001112233332222 356665 7777
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEEeC-CCCHHHH---HHHHHHcCC-------CcccccCHHHHHHHHHH
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVRLE-GTNVDQG---KRILKESGM-------TLITAEDLDDAAEKAVK 418 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~~~-g~~~~~~---~~~L~~~Gi-------p~~vf~~~e~Av~al~~ 418 (422)
....+++.+.+.-..-. .++|||++.-. |- ...- .+.+.+.|. -+++.+||+++++.+..
T Consensus 108 ~GTl~El~e~lt~~q~g-~~~kPvvll~~~g~-~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~~ 178 (191)
T 1t35_A 108 FGTYEELFEVLCWAQIG-IHQKPIGLYNVNGY-FEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQN 178 (191)
T ss_dssp HHHHHHHHHHHHTTSCS-SCCCCEEEECGGGT-THHHHHHHHHHHHTTSSCTTHHHHEEEESSHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhC-CCCCCEEEecCCcc-cchHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 66666666655322111 14799987632 32 2222 244555552 14588999999998754
No 109
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=66.46 E-value=8.8 Score=35.17 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEc--cCCCC-ChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 327 NASEGQVVEAFKILTSDEKVKAILVNI--FGGIM-KCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 327 ~~~~~~~~~al~~ll~d~~vd~ilv~i--~~~~~-~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
..+.+.+.++++.+.+|+++++|++.+ +|+.. ....+.+.+.++.++ .+|||++.+.|
T Consensus 28 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~--~~kPVia~v~g 88 (240)
T 3rst_A 28 GYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKE--TKKPIYVSMGS 88 (240)
T ss_dssp CCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHH--HCCCEEEEEEE
T ss_pred CcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEEECC
Confidence 345678999999999999999999843 33322 234444544444331 37999875433
No 110
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=66.38 E-value=54 Score=31.10 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=62.8
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHHh-cCCCCcEEEEeCCCCHHHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAKQ-VALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~~-~~~~kpivv~~~g~~~~~~~~ 394 (422)
--|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++- ..+++...+ .+...||++..++++..++.+
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er-~~v~~~~~~~~~grvpViaGvg~~~t~~ai~ 93 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLA-HHTDGILLAGTTAESPTLTHDEE-LELFAAVQKVVNGRVPLIAGVGTNDTRDSIE 93 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHH-TTCCCEEESSTTTTGGGSCHHHH-HHHHHHHHHHSCSSSCEEEECCCSSHHHHHH
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEeCCCcCHHHHHH
Confidence 346665688888889999999986 689999985433322 23332 333333333 234689999887776666554
Q ss_pred ---HHHHcCC--------CcccccCHHHHHHHHHHHhh
Q 014588 395 ---ILKESGM--------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 ---~L~~~Gi--------p~~vf~~~e~Av~al~~~~~ 421 (422)
..++.|. |++.-.+.+..++.+.+++.
T Consensus 94 la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~ 131 (311)
T 3h5d_A 94 FVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIAD 131 (311)
T ss_dssp HHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 3445553 63333466777776666654
No 111
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=65.63 E-value=41 Score=31.58 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=59.4
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC-C--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI-M--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~-~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
=|.|=-|..+.+.+.+-++.+.++.++|+++++-..|- . ..++ +.+..++.. +...||++..++++..++.
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~---~grvpviaGvg~~~t~~ai 89 (293)
T 1f6k_A 13 VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEA---KDQIALIAQVGSVNLKEAV 89 (293)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSEEEEECCCSCHHHHH
T ss_pred cCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHh---CCCCeEEEecCCCCHHHHH
Confidence 35555678888999999999988568999997433221 1 2233 233333332 2468999888887666665
Q ss_pred HH---HHHcC-------CCcccccCHHHHHHHHHHHh
Q 014588 394 RI---LKESG-------MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 394 ~~---L~~~G-------ip~~vf~~~e~Av~al~~~~ 420 (422)
+. .++.| -|++.-.+.+..++.+..++
T Consensus 90 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va 126 (293)
T 1f6k_A 90 ELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTII 126 (293)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 53 34445 26222246666666555554
No 112
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=65.50 E-value=66 Score=30.14 Aligned_cols=100 Identities=7% Similarity=-0.041 Sum_probs=61.1
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHHh-cCCCCcEEEEeCCCCHHHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAKQ-VALKVPVVVRLEGTNVDQGKRI 395 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~~-~~~~kpivv~~~g~~~~~~~~~ 395 (422)
=|.|=-|..+.+.+.+-++.+.+. ++|+++++-..|-. ..++- ..+++...+ .+...||++..++++..++.+.
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~l 90 (294)
T 3b4u_A 13 TPFKTDGTVDIDAMIAHARRCLSN-GCDSVTLFGTTGEGCSVGSRER-QAILSSFIAAGIAPSRIVTGVLVDSIEDAADQ 90 (294)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHT-TCSEEEESSTTTTGGGSCHHHH-HHHHHHHHHTTCCGGGEEEEECCSSHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEeCCCccHHHHHHH
Confidence 355555888899999999999874 89999975433321 22332 344444333 2246899988888766666553
Q ss_pred ---HHHcC-------CCcccc-cCHHHHHHHHHHHhh
Q 014588 396 ---LKESG-------MTLITA-EDLDDAAEKAVKAIA 421 (422)
Q Consensus 396 ---L~~~G-------ip~~vf-~~~e~Av~al~~~~~ 421 (422)
.++.| -|++.- .+.+..++.+.+++.
T Consensus 91 a~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 127 (294)
T 3b4u_A 91 SAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFS 127 (294)
T ss_dssp HHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHH
Confidence 34455 252222 466766666665553
No 113
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=65.04 E-value=56 Score=31.85 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=66.9
Q ss_pred HHHHHHHHCCC--CCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCC
Q 014588 306 ATMDIIKLHGG--TPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALK 377 (422)
Q Consensus 306 ~~~D~l~~~G~--~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~ 377 (422)
++.|-....|. .+--|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +..
T Consensus 53 ~~~~~~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~-~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~---~gr 128 (360)
T 4dpp_A 53 TNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQ-NGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCF---GGS 128 (360)
T ss_dssp -CHHHHHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTT
T ss_pred cChhhcccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHH-cCCCEEEecccccChhhCCHHHHHHHHHHHHHHh---CCC
Confidence 34455555554 23457777788999999999999886 689999985433322 2233 233333332 246
Q ss_pred CcEEEEeCCCCHHHHHH---HHHHcCC-------CcccccCHHHHHHHHHHHh
Q 014588 378 VPVVVRLEGTNVDQGKR---ILKESGM-------TLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 378 kpivv~~~g~~~~~~~~---~L~~~Gi-------p~~vf~~~e~Av~al~~~~ 420 (422)
.||++..++++..++.+ ..++.|. |++.-.+.+..++.+.+++
T Consensus 129 vpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA 181 (360)
T 4dpp_A 129 IKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVL 181 (360)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTG
T ss_pred CeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Confidence 89998887776666655 3445664 6333335666666555544
No 114
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=63.81 E-value=23 Score=31.99 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=47.7
Q ss_pred CeEEEEEcCccHH------HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~g------v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+.. --..+++..+|+......-..++.+.+...++++.+++ .+++|+|+. ..+.+|
T Consensus 127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 199 (289)
T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-------GGDIMA 199 (289)
T ss_dssp CSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-------SCHHHH
T ss_pred CeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-------CCcHHH
Confidence 4899887543321 11347788888764322223455566655555555554 588999884 236788
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
.++++++++.+..
T Consensus 200 ~g~~~al~~~G~~ 212 (289)
T 1dbq_A 200 MGALCAADEMGLR 212 (289)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 8999998886543
No 115
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=63.35 E-value=51 Score=31.23 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=61.4
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQG 392 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~ 392 (422)
-=|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~---~grvpviaGvg~~~t~~a 92 (309)
T 3fkr_A 17 PTTFADTGDLDLASQKRAVDFMID-AGSDGLCILANFSEQFAITDDERDVLTRTILEHV---AGRVPVIVTTSHYSTQVC 92 (309)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-TTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSCEEEECCCSSHHHH
T ss_pred eCCCCcCCCcCHHHHHHHHHHHHH-cCCCEEEECccccCcccCCHHHHHHHHHHHHHHh---CCCCcEEEecCCchHHHH
Confidence 346666688999999999999986 689999984332211 2233 333333333 246899998887766666
Q ss_pred HH---HHHHcC-------CCcccc-----cCHHHHHHHHHHHhh
Q 014588 393 KR---ILKESG-------MTLITA-----EDLDDAAEKAVKAIA 421 (422)
Q Consensus 393 ~~---~L~~~G-------ip~~vf-----~~~e~Av~al~~~~~ 421 (422)
.+ ..++.| -| .| .+.+..++.+..++.
T Consensus 93 i~la~~A~~~Gadavlv~~P--yy~~~~~~s~~~l~~~f~~va~ 134 (309)
T 3fkr_A 93 AARSLRAQQLGAAMVMAMPP--YHGATFRVPEAQIFEFYARVSD 134 (309)
T ss_dssp HHHHHHHHHTTCSEEEECCS--CBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCC--CCccCCCCCHHHHHHHHHHHHH
Confidence 55 344455 26 44 367777776666654
No 116
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=63.29 E-value=48 Score=29.50 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=60.9
Q ss_pred eEEEEEcCc--cHHHHHHHHHHHCCCCC-------------CCe-eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 293 EIGCMVNGA--GLAMATMDIIKLHGGTP-------------ANF-LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 293 ~vaiitngG--G~gv~~~D~l~~~G~~~-------------~NP-lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
++.++|-|| |+.-.++|.+.+.|+.. .|| +|-.-....-..++.+-+-. .|+++ .++|+
T Consensus 53 g~~lV~GGG~~GlM~a~~~gA~~~GG~viGv~p~~l~~~e~~~~~~~~~i~~~~~~~Rk~~m~~~----sda~I-alPGG 127 (199)
T 3qua_A 53 GWTLVSGGGNVSAMGAVAQAARAKGGHTVGVIPKALVHRELADVDAAELIVTDTMRERKREMEHR----SDAFI-ALPGG 127 (199)
T ss_dssp TCEEEECCBCSHHHHHHHHHHHHTTCCEEEEEEGGGTTTTTBCTTSSEEEEESSHHHHHHHHHHH----CSEEE-ECSCC
T ss_pred CCEEEECCCccCHHHHHHHHHHHcCCcEEEEeCchhhhccccCCCCCeeEEcCCHHHHHHHHHHh----cCccE-EeCCC
Confidence 466777665 44444568888888731 221 11100000111233332222 35644 47888
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH---HHHcCC-------CcccccCHHHHHHHH
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI---LKESGM-------TLITAEDLDDAAEKA 416 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~---L~~~Gi-------p~~vf~~~e~Av~al 416 (422)
....+++.+.+.-..-. .++|||++.-.......-.+. +.+.|. -+++.+||+++++.+
T Consensus 128 ~GTldEl~e~lt~~qlg-~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~~e~~~~l 196 (199)
T 3qua_A 128 IGTLEEFFEAWTAGYLG-MHDKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDNVEAALEAC 196 (199)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhc-cCCCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHHHH
Confidence 76677777766433212 157999876432223333332 233342 145788999998876
No 117
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=62.89 E-value=41 Score=31.38 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=52.6
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++..-+... -..+++..+|+......-..++.+.+.-.++++.++ ..|++++|+. ..|.+|
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nd~~A 254 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-------SNDDMA 254 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEE-------SSHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-------CChHHH
Confidence 38999976533222 134788888886543333456677776555555555 6789999984 247888
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
-++++++++.+..
T Consensus 255 ~g~~~al~~~G~~ 267 (338)
T 3dbi_A 255 IGAMKALHERGVA 267 (338)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999886543
No 118
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=62.65 E-value=37 Score=29.25 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=68.2
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEE---ccCCCCC----
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN---IFGGIMK---- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~---i~~~~~~---- 359 (422)
||+|+..- -.+---+.|.+.++|.+--.-+.+.|. .. +.-+.+.+.+ ++|+|+.. +-|++..
T Consensus 19 ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGa-fE--iP~aak~la~--~yDavIaLG~VIrG~T~Hfd~V 93 (160)
T 2c92_A 19 RLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGA-IE--IPVVAQELAR--NHDAVVALGVVIRGQTPHFDYV 93 (160)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSG-GG--HHHHHHHHHT--SCSEEEEEEEEECCSSTHHHHH
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCceEEEECCcH-HH--HHHHHHHHHh--cCCEEEEEeeeecCCchHHHHH
Confidence 78887643 245556779999999761122333343 22 3345566665 59999972 3345442
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 360 CDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
|.+++++|.+..-+ .++||... +...+.+++. .++|.+-+.-+--.+|+.+.+++++
T Consensus 94 a~~vs~Gl~~v~L~--~~vPV~~GVLT~~~~eQA~---~Rag~~~~~~nKG~eaA~aalem~~ 151 (160)
T 2c92_A 94 CDAVTQGLTRVSLD--SSTPIANGVLTTNTEEQAL---DRAGLPTSAEDKGAQATVAALATAL 151 (160)
T ss_dssp HHHHHHHHHHHHHH--HTCCEEEEEEEESSHHHHH---TTBTCTTCSCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--cCCCEEEEEcCCCCHHHHH---HHhccccccchhHHHHHHHHHHHHH
Confidence 45566777777544 48999865 4333455543 4556521122335667777666653
No 119
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=62.13 E-value=60 Score=30.88 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=60.7
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQG 392 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~ 392 (422)
--|.|=-|..+.+.+.+-++-+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++
T Consensus 31 vTPf~~dg~iD~~~l~~li~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~---~grvpViaGvg~~st~~a 106 (315)
T 3si9_A 31 ITPFDDNGAIDEKAFCNFVEWQIT-QGINGVSPVGTTGESPTLTHEEHKRIIELCVEQV---AKRVPVVAGAGSNSTSEA 106 (315)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-TTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSCBEEECCCSSHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccCccccCHHHHHHHHHHHHHHh---CCCCcEEEeCCCCCHHHH
Confidence 345665688999999999999986 689999974332211 2233 233333333 246899998887766666
Q ss_pred HH---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 393 KR---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 393 ~~---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
.+ ..++.|. |++.-.+.+..++-+.+++.
T Consensus 107 i~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~ 145 (315)
T 3si9_A 107 VELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAK 145 (315)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 55 3444553 63333466666666555543
No 120
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=62.12 E-value=68 Score=30.29 Aligned_cols=99 Identities=9% Similarity=0.058 Sum_probs=62.3
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHHh-cCCCCcEEEEeCCCCHHHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAKQ-VALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~~-~~~~kpivv~~~g~~~~~~~~ 394 (422)
-=|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++- ..+++...+ .+...||++..++++..++.+
T Consensus 23 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er-~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~ 100 (307)
T 3s5o_A 23 TTPFTATAEVDYGKLEENLHKLGT-FPFRGFVVQGSNGEFPFLTSSER-LEVVSRVRQAMPKNRLLLAGSGCESTQATVE 100 (307)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHTT-SCCSEEEESSGGGTGGGSCHHHH-HHHHHHHHHTSCTTSEEEEECCCSSHHHHHH
T ss_pred EccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHH-HHHHHHHHHHcCCCCcEEEecCCCCHHHHHH
Confidence 456666788999999999999875 579999985433211 23332 334444333 234688988887776666654
Q ss_pred ---HHHHcCC-------Ccccc----cCHHHHHHHHHHHhh
Q 014588 395 ---ILKESGM-------TLITA----EDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 ---~L~~~Gi-------p~~vf----~~~e~Av~al~~~~~ 421 (422)
..++.|. | .| .+.+..++.+.+++.
T Consensus 101 la~~A~~~Gadavlv~~P--~y~~~~~s~~~l~~~f~~ia~ 139 (307)
T 3s5o_A 101 MTVSMAQVGADAAMVVTP--CYYRGRMSSAALIHHYTKVAD 139 (307)
T ss_dssp HHHHHHHTTCSEEEEECC--CTTGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCC--CcCCCCCCHHHHHHHHHHHHh
Confidence 3445563 6 34 367777776666553
No 121
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=62.07 E-value=48 Score=35.66 Aligned_cols=119 Identities=14% Similarity=0.061 Sum_probs=72.6
Q ss_pred CCeEEEEEcCc-cH---HHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 291 DGEIGCMVNGA-GL---AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 291 ~g~vaiitngG-G~---gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
+++|.+-|.+| +. .-+.+.+++..|..+ +|++.+.+++.+.++. .+ .++|.|.++.... ........
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeV---i~lG~~v~~eeiv~aA---~e-~~adiVglSsl~~--~~~~~~~~ 674 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDV---DIGPLFQTPREVAQQA---VD-ADVHAVGVSTLAA--GHKTLVPE 674 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEE---EECCTTCCHHHHHHHH---HH-TTCSEEEEEECSS--CHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEE---eeCCCCCCHHHHHHHH---HH-cCCCEEEEeeecH--HHHHHHHH
Confidence 45777777666 11 135667888889886 6788888888654444 33 4678887754432 34455677
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCccccc---CHHHHHHHHHHHh
Q 014588 367 IVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAE---DLDDAAEKAVKAI 420 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~---~~e~Av~al~~~~ 420 (422)
+++.+++.+... |.+..||..+......+++.|+. .+|. +..+++..+..+.
T Consensus 675 vi~~Lr~~G~~d-v~VivGG~~P~~d~~~l~~~GaD-~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 675 LIKELNSLGRPD-ILVMCGGVIPPQDYEFLFEVGVS-NVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp HHHHHHHTTCTT-SEEEEEESCCGGGHHHHHHHTCC-EEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC-CEEEEeCCCCcccHHHHHhCCCC-EEeCCCCCHHHHHHHHHHHH
Confidence 888787754322 33344542122223457888985 2344 7888887777654
No 122
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=61.92 E-value=34 Score=33.01 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=39.3
Q ss_pred CCeEEEEEcCccHHH-------HHHHHHHHCCCCCCCe---e---eccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAM-------ATMDIIKLHGGTPANF---L---DVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv-------~~~D~l~~~G~~~~NP---l---Dl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
+.+|+|++-|+|... .+...++..|+++... . ......+.++. +-|..++.||+||+|+....
T Consensus 13 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra-~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 13 GDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERA-KELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp TCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHH-HHHHHHHHCTTEEEEEESCC
T ss_pred CCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHH-HHHHHHhhCCCCCEEEEccc
Confidence 348999999998742 4567888999864211 1 11122233333 34555567999999996443
No 123
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=61.63 E-value=61 Score=30.32 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=59.0
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCee-eccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFL-DVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPl-Dl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++..-+... -..+++..+|. . ... -..++.+.+. +..+.+.+.+.|++++|+. ..+.+
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~-------~~d~~ 216 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-V-HLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWS-------ANDEM 216 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-E-EEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEE-------SSHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-e-EEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEE-------CChHH
Confidence 47888875533221 23467777776 2 222 2346666665 4455555557789999884 24788
Q ss_pred HHHHHHHHHhcCCCCc--EE-EEeCCCCHHHHHHHHHHcCCC
Q 014588 364 ASGIVNAAKQVALKVP--VV-VRLEGTNVDQGKRILKESGMT 402 (422)
Q Consensus 364 a~~i~~~~~~~~~~kp--iv-v~~~g~~~~~~~~~L~~~Gip 402 (422)
|.++++++++.+...| |. +...+ ...+.+.+....+.
T Consensus 217 a~g~~~al~~~G~~vP~di~vvg~d~--~~~~l~~~~~~~lt 256 (350)
T 3h75_A 217 ALGAMQAARELGRKPGTDLLFSGVNS--SPEALQALIDGKLS 256 (350)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEEEESC--CHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHcCCCCCCCeEEEecCC--CHHHHHHHHcCCee
Confidence 8999999988654322 33 33544 34555556655554
No 124
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=61.43 E-value=59 Score=30.89 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC-C--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI-M--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQG 392 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~-~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~ 392 (422)
-=|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|- . ..++ +.+..++.. +...||++..++++..++
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~---~grvpViaGvg~~st~ea 107 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQ-EGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQV---KGRIPVIAGTGANSTREA 107 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-HTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHH---TTSSCEEEECCCSSHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEeCCCcCHHHH
Confidence 346666688999999999999886 58999998433221 1 2233 333333333 236899998887766666
Q ss_pred HH---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 393 KR---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 393 ~~---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
.+ ..++.|. |++.-.+.+..++-+.+++.
T Consensus 108 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 146 (314)
T 3qze_A 108 VALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAE 146 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 55 3444553 63333466666666555543
No 125
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=61.18 E-value=67 Score=30.04 Aligned_cols=98 Identities=8% Similarity=0.083 Sum_probs=59.8
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
=|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++.
T Consensus 11 TPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~---~gr~pviaGvg~~~t~~ai 86 (291)
T 3tak_A 11 TPMLKDGGVDWKSLEKLVEWHIE-QGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVA---NKRIPIIAGTGANSTREAI 86 (291)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-HTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSCEEEECCCSSHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-CCCCEEEECccccccccCCHHHHHHHHHHHHHHh---CCCCeEEEeCCCCCHHHHH
Confidence 35555688888999999999886 689999875433321 2233 233333333 2368999988877666665
Q ss_pred H---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 394 R---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 394 ~---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
+ ..++.|. |++.-.+.+..++.+.+++.
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~ 124 (291)
T 3tak_A 87 ELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAE 124 (291)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 5 3444553 63333466666666655543
No 126
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=60.98 E-value=9.1 Score=33.03 Aligned_cols=86 Identities=19% Similarity=0.270 Sum_probs=55.6
Q ss_pred eEEEEEcC------ccHHHHHHHHHHHCCCCCCCe--eeccCCCCHHHHHHHHHHHHcCCCccEEEEE--c-cCCCCC--
Q 014588 293 EIGCMVNG------AGLAMATMDIIKLHGGTPANF--LDVGGNASEGQVVEAFKILTSDEKVKAILVN--I-FGGIMK-- 359 (422)
Q Consensus 293 ~vaiitng------GG~gv~~~D~l~~~G~~~~NP--lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~--i-~~~~~~-- 359 (422)
||+|+..- ..+---+.|.+.++|.+..|. +.+.|. --+.-+.+.+.+..++|+|+.. + -|++..
T Consensus 12 ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGa---fEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd 88 (158)
T 1di0_A 12 KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGA---YEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHD 88 (158)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSG---GGHHHHHHHHHHTSCCSEEEEEEECCCCSSBCCH
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---HHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHH
Confidence 67777543 245556678999999875443 233343 2255677888888899999972 3 245443
Q ss_pred --hHHHHHHHHHHHHhcCCCCcEEEE
Q 014588 360 --CDVIASGIVNAAKQVALKVPVVVR 383 (422)
Q Consensus 360 --~~~~a~~i~~~~~~~~~~kpivv~ 383 (422)
|.+++++|.+..-+ .++||...
T Consensus 89 ~Va~~vs~Gl~~v~L~--~~vPV~~G 112 (158)
T 1di0_A 89 FVATAVINGMMQVQLE--TEVPVLSV 112 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCCCEEEE
T ss_pred HHHHHHHHHHHHHHhh--cCCCEEEE
Confidence 55666777777544 58999875
No 127
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=60.82 E-value=54 Score=30.79 Aligned_cols=102 Identities=14% Similarity=0.007 Sum_probs=55.0
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccC--------------CCCHHHHHHHHHHHH-cCCCccEEEEEccCCC
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG--------------NASEGQVVEAFKILT-SDEKVKAILVNIFGGI 357 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g--------------~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~ 357 (422)
|||||..||-.|-.-+.++...+....--+|... ..+.+.+.+.++.+. +|+++|+|+|..+..
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~- 83 (312)
T 3o9z_A 5 RFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH- 83 (312)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG-
T ss_pred EEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch-
Confidence 7999998877788888888887653211111111 011222222223333 789999999754422
Q ss_pred CChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCC
Q 014588 358 MKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMT 402 (422)
Q Consensus 358 ~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip 402 (422)
.-++-+..+++. +|+|++= ....+.+++.+ .-++.|+.
T Consensus 84 ----~H~~~~~~al~a---GkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 125 (312)
T 3o9z_A 84 ----LHYPQIRMALRL---GANALSEKPLVLWPEEIARLKELEARTGRR 125 (312)
T ss_dssp ----GHHHHHHHHHHT---TCEEEECSSSCSCHHHHHHHHHHHHHHCCC
T ss_pred ----hhHHHHHHHHHC---CCeEEEECCCCCCHHHHHHHHHHHHHcCCE
Confidence 223333344443 6777652 33334445444 44567776
No 128
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=60.60 E-value=37 Score=30.92 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=51.3
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
.||++++...+.... ..+++..+|+......-..++.+.+.-.++++.++ +.+.+++|+. ..|.+|
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~nd~~A 199 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIIT-------DCNMLG 199 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEE-------SSHHHH
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEE-------CCHHHH
Confidence 389999866443221 33678888876543333445566666444555444 5689999984 247889
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
-++++++++.+..
T Consensus 200 ~g~~~al~~~G~~ 212 (294)
T 3qk7_A 200 DGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCC
Confidence 9999999886543
No 129
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=60.10 E-value=73 Score=28.30 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=52.9
Q ss_pred CeEEEEEcCc-c-----HHH-----HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCC
Q 014588 292 GEIGCMVNGA-G-----LAM-----ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMK 359 (422)
Q Consensus 292 g~vaiitngG-G-----~gv-----~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~ 359 (422)
++|++++... + ... -..+++..+|++...-.-..++.+.+.-.++++.++ +.|++++|+. .
T Consensus 115 ~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~ 187 (276)
T 2h0a_A 115 PIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVFA-------G 187 (276)
T ss_dssp CEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEEC-------S
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEEE-------C
Confidence 3899998654 3 111 134788888876432111234455665555555555 4578999883 2
Q ss_pred hHHHHHHHHHHHHhcCCCCc--EE-EEeCCC
Q 014588 360 CDVIASGIVNAAKQVALKVP--VV-VRLEGT 387 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kp--iv-v~~~g~ 387 (422)
.+.+|.++++++++.+...| +. +...+.
T Consensus 188 ~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 218 (276)
T 2h0a_A 188 ADQVALGVLEEAVRLGLTPGRDVRVLGFDGH 218 (276)
T ss_dssp SHHHHHHHHHHHHTTSCTTTTSEEEEEESCC
T ss_pred CcHHHHHHHHHHHHcCCCCCCCeEEEEeCCC
Confidence 47888899999888654333 43 345444
No 130
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=59.82 E-value=79 Score=28.02 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=51.0
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -..+++..+|++...-.-..++.+.+...++++.++ +.|.+++|+. ..+.+|
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 193 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVC-------SHEEIA 193 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEE-------SSHHHH
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-------cCcHHH
Confidence 48999986543221 124778888876533222345566666555555555 4578999884 247788
Q ss_pred HHHHHHHHhcCCCCc
Q 014588 365 SGIVNAAKQVALKVP 379 (422)
Q Consensus 365 ~~i~~~~~~~~~~kp 379 (422)
.++++++++.+...|
T Consensus 194 ~g~~~al~~~g~~vP 208 (275)
T 3d8u_A 194 IGALFECHRRVLKVP 208 (275)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999888654434
No 131
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=59.42 E-value=88 Score=28.32 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=60.9
Q ss_pred CeEEEEEcCccH-HHHHHHHHHHCCCCCCCeeecc-------CCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHH
Q 014588 292 GEIGCMVNGAGL-AMATMDIIKLHGGTPANFLDVG-------GNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDV 362 (422)
Q Consensus 292 g~vaiitngGG~-gv~~~D~l~~~G~~~~NPlDl~-------g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~ 362 (422)
+||+++|.-.-. .-...+.++..|..+..|-..+ |..+.+.+.++++.++ .++++|+|++. +.......
T Consensus 118 ~rvglltpy~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~-CT~l~~l~- 195 (240)
T 3ixl_A 118 RRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLS-SGGLLTLD- 195 (240)
T ss_dssp SEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEE-CTTSCCTT-
T ss_pred CEEEEEeCChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEe-CCCCchhh-
Confidence 489999985433 2345588889998654443221 3456677888888844 78999999984 33322211
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCC
Q 014588 363 IASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMT 402 (422)
Q Consensus 363 ~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip 402 (422)
+++.+-+ + .++|++- .+..-.+..|+..|++
T Consensus 196 ~i~~le~---~--lg~PVid----s~~a~~w~~lr~~g~~ 226 (240)
T 3ixl_A 196 AIPEVER---R--LGVPVVS----SSPAGFWDAVRLAGGG 226 (240)
T ss_dssp HHHHHHH---H--HSSCEEE----HHHHHHHHHHHHTTSC
T ss_pred hHHHHHH---H--hCCCEEe----HHHHHHHHHHHHcCCC
Confidence 2233322 2 3688863 1234467778888876
No 132
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=59.34 E-value=59 Score=30.91 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=61.1
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQG 392 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~ 392 (422)
-=|.|=-|..+.+.+.+-++-+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~---~grvpViaGvg~~~t~~a 108 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLID-GGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTV---AHRVPTIVSVSDLTTAKT 108 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-TTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSCBEEECCCSSHHHH
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEecCCCCHHHH
Confidence 456666688999999999999986 689999974332211 2233 333333333 246899988877766666
Q ss_pred HH---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 393 KR---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 393 ~~---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
.+ ..++.|. |++.-.+.+..++-+.+++.
T Consensus 109 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 147 (315)
T 3na8_A 109 VRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGE 147 (315)
T ss_dssp HHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 55 3445563 63333466666666655543
No 133
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=58.58 E-value=44 Score=30.24 Aligned_cols=79 Identities=14% Similarity=0.070 Sum_probs=50.4
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
.+|++++...+.... ..+++..+|+......-..++.+.+...++++.++ ..|.+++|+. ..+.+|
T Consensus 128 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~A 200 (288)
T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVS-------ISGSST 200 (288)
T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEE-------SCHHHH
T ss_pred CeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEEE-------cCcHHH
Confidence 389999765443221 23677788775433222345566666555555555 4678999884 247888
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
.++++++++.+..
T Consensus 201 ~g~~~al~~~g~~ 213 (288)
T 3gv0_A 201 IALVAGFEAAGVK 213 (288)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999886543
No 134
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=57.52 E-value=73 Score=25.54 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=54.5
Q ss_pred eeccCCCCHHH---HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcC-CCCcEEEEeCCCCHHHHHHHHH
Q 014588 322 LDVGGNASEGQ---VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA-LKVPVVVRLEGTNVDQGKRILK 397 (422)
Q Consensus 322 lDl~g~~~~~~---~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~-~~kpivv~~~g~~~~~~~~~L~ 397 (422)
+.+.|..+.+. +.+.+.-.....+++.+++.+.+-..-....+..+....+..+ .+..++++ |- .++..+.|.
T Consensus 16 v~l~G~lD~~~a~~l~~~ll~~i~~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~--Gi-~p~va~~l~ 92 (123)
T 3zxn_A 16 VAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLT--GI-KPAVAITLT 92 (123)
T ss_dssp EECCCCC-CHHHHHHHHHHHHHHTSSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEE--CC-CHHHHHHHH
T ss_pred EEEeEeeCHHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEE--cC-CHHHHHHHH
Confidence 45667777665 3333333334567788888765433322334455544433321 23333322 32 245566777
Q ss_pred HcCCC---cccccCHHHHHHHHHHHhh
Q 014588 398 ESGMT---LITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 398 ~~Gip---~~vf~~~e~Av~al~~~~~ 421 (422)
..|+. +.+|.+.++|++.+.+.++
T Consensus 93 ~~G~~l~~i~~~~~l~~Al~~l~~~~~ 119 (123)
T 3zxn_A 93 EMGLDLRGMATALNLQKGLDKLKNLAR 119 (123)
T ss_dssp HTTCCSTTSEEESSHHHHHHHHHHHHT
T ss_pred HhCCCccceEEECCHHHHHHHHHHhhh
Confidence 77763 3589999999999887765
No 135
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=56.85 E-value=9.4 Score=32.89 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=57.6
Q ss_pred cCCC-eEEEEEcC------ccHHHHHHHHHHHCCCCCCCe--eeccCCCCHHHHHHHHHHHHcCCCccEEEEE--c-cCC
Q 014588 289 GLDG-EIGCMVNG------AGLAMATMDIIKLHGGTPANF--LDVGGNASEGQVVEAFKILTSDEKVKAILVN--I-FGG 356 (422)
Q Consensus 289 ~~~g-~vaiitng------GG~gv~~~D~l~~~G~~~~NP--lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~--i-~~~ 356 (422)
..++ ||+|+..- -.+---+.|.+.++|.+..|. +.+.|. . -+.-+.+.|.+..++|+|+.. + -|+
T Consensus 8 ~~~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGa-f--EiP~aa~~la~~~~yDavIaLG~VIrG~ 84 (157)
T 2obx_A 8 DYETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGA-Y--EIPLHARTLAETGRYGAVLGTAFVVNGG 84 (157)
T ss_dssp SCCCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSG-G--GHHHHHHHHHHHTCCSEEEEEEECCCCS
T ss_pred CCCCCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH-H--HHHHHHHHHHhcCCCCEEEEeeccccCC
Confidence 3445 78887643 245556778999999875443 233343 2 245566777777889999972 3 245
Q ss_pred CCC----hHHHHHHHHHHHHhcCCCCcEEEE
Q 014588 357 IMK----CDVIASGIVNAAKQVALKVPVVVR 383 (422)
Q Consensus 357 ~~~----~~~~a~~i~~~~~~~~~~kpivv~ 383 (422)
+.. |.+++++|.+..-+ .++||...
T Consensus 85 T~Hfd~Va~~vs~Gl~~v~L~--~~vPV~~G 113 (157)
T 2obx_A 85 IYRHEFVASAVIDGMMNVQLS--TGVPVLSA 113 (157)
T ss_dssp SBCCHHHHHHHHHHHHHHHHH--HCCCEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHhh--cCCCEEEE
Confidence 443 56666777777554 48999865
No 136
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=56.84 E-value=56 Score=30.79 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=54.5
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccC--------------CCCHHHHHHHHHHHH--cCCCccEEEEEccCC
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG--------------NASEGQVVEAFKILT--SDEKVKAILVNIFGG 356 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g--------------~~~~~~~~~al~~ll--~d~~vd~ilv~i~~~ 356 (422)
|+|||..||-.|-.-+.++...|....--.|... ..+.+.+.+.++.+. +++++|+|+|..+..
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~ 84 (318)
T 3oa2_A 5 NFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNY 84 (318)
T ss_dssp EEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGG
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcH
Confidence 7999988777788888888887653211111110 012222333334444 489999999754421
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCC
Q 014588 357 IMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMT 402 (422)
Q Consensus 357 ~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip 402 (422)
.-++-+..+++. +|+|++= ....+.+++.+ .-++.|+.
T Consensus 85 -----~H~~~~~~al~a---GkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 126 (318)
T 3oa2_A 85 -----LHYPHIAAGLRL---GCDVICEKPLVPTPEMLDQLAVIERETDKR 126 (318)
T ss_dssp -----GHHHHHHHHHHT---TCEEEECSSCCSCHHHHHHHHHHHHHHTCC
T ss_pred -----HHHHHHHHHHHC---CCeEEEECCCcCCHHHHHHHHHHHHHhCCE
Confidence 223333344432 6776652 32334444443 44556776
No 137
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=56.64 E-value=81 Score=29.66 Aligned_cols=97 Identities=8% Similarity=0.113 Sum_probs=58.4
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
-|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++.
T Consensus 21 TPF~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~---~grvpViaGvg~~~t~~ai 96 (303)
T 2wkj_A 21 TPFDQQQALDKASLRRLVQFNIQ-QGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEA---KGKIKLIAHVGCVSTAESQ 96 (303)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTTSEEEEECCCSSHHHHH
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECeeccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEecCCCCHHHHH
Confidence 35555588888999999999987 589999975333211 2233 233333332 2468999888877666665
Q ss_pred HH---HHHcC-------CCcccccCHHHHHHHHHHHh
Q 014588 394 RI---LKESG-------MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 394 ~~---L~~~G-------ip~~vf~~~e~Av~al~~~~ 420 (422)
+. .++.| -|++.-.+.+..++-+..++
T Consensus 97 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va 133 (303)
T 2wkj_A 97 QLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAII 133 (303)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 43 34445 26222246666666555554
No 138
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=56.19 E-value=18 Score=34.70 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=39.5
Q ss_pred CCeEEEEEcCccHHH-------HHHHHHHHCCCCC---CCeee---ccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAM-------ATMDIIKLHGGTP---ANFLD---VGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv-------~~~D~l~~~G~~~---~NPlD---l~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
+.+|||++.|+|.+. .+...++..|+++ .|... .-+..+.++. +-|..++.||+||+|+....|
T Consensus 12 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra-~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 12 GDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRV-ADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHH-HHHHHHHHCTTEEEEEESCCC
T ss_pred CCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHH-HHHHHHhhCCCCCEEEEcCCc
Confidence 349999999988642 3567889999854 11111 1222223333 334556689999999964443
No 139
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=55.95 E-value=75 Score=30.08 Aligned_cols=99 Identities=9% Similarity=0.058 Sum_probs=60.8
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH-
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI- 395 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~- 395 (422)
=|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++- ..+++...+.....||++..++++..++.+.
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Lt~~Er-~~v~~~~v~~~grvpViaGvg~~~t~~ai~la 95 (313)
T 3dz1_A 18 TPFHDDGKIDDVSIDRLTDFYAE-VGCEGVTVLGILGEAPKLDAAEA-EAVATRFIKRAKSMQVIVGVSAPGFAAMRRLA 95 (313)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-TTCSEEEESTGGGTGGGSCHHHH-HHHHHHHHHHCTTSEEEEECCCSSHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-CCCCEEEeCccCcChhhCCHHHH-HHHHHHHHHHcCCCcEEEecCCCCHHHHHHHH
Confidence 45655688899999999999987 689999975332211 23332 2333332221136899988877766666553
Q ss_pred --HHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 396 --LKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 396 --L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
.++.|. |+ .+.+.+..++-+.+++.
T Consensus 96 ~~A~~~Gadavlv~~P~-~~~s~~~l~~~f~~va~ 129 (313)
T 3dz1_A 96 RLSMDAGAAGVMIAPPP-SLRTDEQITTYFRQATE 129 (313)
T ss_dssp HHHHHHTCSEEEECCCT-TCCSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHH
Confidence 444453 53 44566776666666553
No 140
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=55.07 E-value=82 Score=25.40 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=65.5
Q ss_pred cCCCeEEEEEcCccHHHHHHHHHHHCCCCC----C-----------CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEc
Q 014588 289 GLDGEIGCMVNGAGLAMATMDIIKLHGGTP----A-----------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNI 353 (422)
Q Consensus 289 ~~~g~vaiitngGG~gv~~~D~l~~~G~~~----~-----------NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i 353 (422)
.++++|.|+.. |-.|...+..+...|... . +.--+.|+++.... ++.. .-.+.|.+++..
T Consensus 5 ~~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~---l~~a-~i~~ad~vi~~~ 79 (140)
T 3fwz_A 5 DICNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEI---MQLA-HLECAKWLILTI 79 (140)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHH---HHHT-TGGGCSEEEECC
T ss_pred cCCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHH---HHhc-CcccCCEEEEEC
Confidence 35678888864 669999999999999742 1 11124456554432 2211 113567777533
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHH
Q 014588 354 FGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 354 ~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~ 419 (422)
. .+.....++..+++.++..+|+++... .+..+.|++.|+-. ++.....++..+.+.
T Consensus 80 ~-----~~~~n~~~~~~a~~~~~~~~iiar~~~---~~~~~~l~~~G~d~-vi~p~~~~a~~i~~~ 136 (140)
T 3fwz_A 80 P-----NGYEAGEIVASARAKNPDIEIIARAHY---DDEVAYITERGANQ-VVMGEREIARTMLEL 136 (140)
T ss_dssp S-----CHHHHHHHHHHHHHHCSSSEEEEEESS---HHHHHHHHHTTCSE-EEEHHHHHHHHHHHH
T ss_pred C-----ChHHHHHHHHHHHHHCCCCeEEEEECC---HHHHHHHHHCCCCE-EECchHHHHHHHHHH
Confidence 3 223333344455554456677776644 34456888999972 333333444545444
No 141
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=54.85 E-value=94 Score=29.87 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=59.6
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHH
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~ 393 (422)
=|.|=-|..+.+.+.+-++.+.+ .++|+|+++-..|-. ..++ +.+..++.. +...||++..++++..++.
T Consensus 41 TPF~~dg~ID~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~---~grvpViaGvg~~st~eai 116 (343)
T 2v9d_A 41 TIFTADGQLDKPGTAALIDDLIK-AGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHV---DRRVPVLIGTGGTNARETI 116 (343)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-TTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSCEEEECCSSCHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEecCCCCHHHHH
Confidence 45555578888999999999987 589999975333221 2233 233333333 2368999888877666665
Q ss_pred HH---HHHcC-------CCcccccCHHHHHHHHHHHhh
Q 014588 394 RI---LKESG-------MTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 394 ~~---L~~~G-------ip~~vf~~~e~Av~al~~~~~ 421 (422)
+. .++.| -|++.-.+.+..++-+.+++.
T Consensus 117 ~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~ 154 (343)
T 2v9d_A 117 ELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVAD 154 (343)
T ss_dssp HHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 53 33445 252222466666666666554
No 142
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=54.68 E-value=60 Score=30.78 Aligned_cols=98 Identities=9% Similarity=-0.029 Sum_probs=61.0
Q ss_pred CCeeec-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC-C--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHH
Q 014588 319 ANFLDV-GGNASEGQVVEAFKILTSDEKVKAILVNIFGGI-M--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQ 391 (422)
Q Consensus 319 ~NPlDl-~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~-~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~ 391 (422)
-=|.|= -|..+.+.+.+-++-+.+ .++|+++++-..|- . ..++ +.+..++.. +...||++..+. +..+
T Consensus 20 vTPf~~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~---~grvpViaGvg~-~t~~ 94 (316)
T 3e96_A 20 ITPFRKSDGSIDWHHYKETVDRIVD-NGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYV---HGRALVVAGIGY-ATST 94 (316)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHT-TTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSEEEEEECS-SHHH
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHh---CCCCcEEEEeCc-CHHH
Confidence 456666 688999999999999986 68999996432221 1 2233 333333333 236899987765 5666
Q ss_pred HHH---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 392 GKR---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 392 ~~~---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
+.+ ..++.|. |++...+.+..++-+.+++.
T Consensus 95 ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 134 (316)
T 3e96_A 95 AIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIE 134 (316)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 555 3444553 74444577777777666654
No 143
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=54.67 E-value=79 Score=28.54 Aligned_cols=78 Identities=23% Similarity=0.202 Sum_probs=50.5
Q ss_pred CeEEEEEcCc-cHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGA-GLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngG-G~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++... +... -..+++..+|++...-.-..++.+.+.-.++++.+++ .|++++|+. ..|.+
T Consensus 134 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~ 206 (289)
T 2fep_A 134 TDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS-------ATDEM 206 (289)
T ss_dssp SSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE-------SSHHH
T ss_pred CeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE-------CCHHH
Confidence 4899998664 3322 2347788888765322122455666665556665554 578999884 24778
Q ss_pred HHHHHHHHHhcCC
Q 014588 364 ASGIVNAAKQVAL 376 (422)
Q Consensus 364 a~~i~~~~~~~~~ 376 (422)
|.++++++++.+.
T Consensus 207 A~g~~~al~~~G~ 219 (289)
T 2fep_A 207 ALGIIHAAQDQGL 219 (289)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 8899999888653
No 144
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=54.63 E-value=67 Score=29.92 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=51.1
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -..+++..+|+......-..++.+.+.-.++++.+++ .+.+++|+. ..|.+|
T Consensus 178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nd~~A 250 (340)
T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-------GGDIMA 250 (340)
T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-------SSHHHH
T ss_pred CEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-------CCHHHH
Confidence 48999975433211 1347788888764322223455666665556655555 578999884 247788
Q ss_pred HHHHHHHHhcCCCCc
Q 014588 365 SGIVNAAKQVALKVP 379 (422)
Q Consensus 365 ~~i~~~~~~~~~~kp 379 (422)
.++++++++.+...|
T Consensus 251 ~g~~~al~~~G~~vP 265 (340)
T 1qpz_A 251 MGALCAADEMGLRVP 265 (340)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999888654333
No 145
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=54.57 E-value=32 Score=31.02 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=47.8
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -..+++..+|++...-.-..++.+.+...++++.+++ .+++|+|++ ..+.+|
T Consensus 140 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 212 (296)
T 3brq_A 140 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-------SNDDMA 212 (296)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE-------SSHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-------CChHHH
Confidence 48999976533211 1347788888764322123455666655555555554 588999884 236788
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
.++++++++.+..
T Consensus 213 ~g~~~al~~~g~~ 225 (296)
T 3brq_A 213 IGAMKALHERGVA 225 (296)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 8888888876533
No 146
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=54.51 E-value=68 Score=29.23 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=51.6
Q ss_pred eEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHH-----H-cCCCccEEEEEccCCCCCh
Q 014588 293 EIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-----T-SDEKVKAILVNIFGGIMKC 360 (422)
Q Consensus 293 ~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~l-----l-~d~~vd~ilv~i~~~~~~~ 360 (422)
+|++++...+... -..+++..+|+......-..++.+.+.-.++++.+ + +.|.+++|+. ..
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-------~n 205 (303)
T 3kke_A 133 RIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVV-------AS 205 (303)
T ss_dssp SEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-------SS
T ss_pred eEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEE-------CC
Confidence 8999986544222 13467888888754333344666666655555555 4 4688999984 24
Q ss_pred HHHHHHHHHHHHhcCCC
Q 014588 361 DVIASGIVNAAKQVALK 377 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~~~ 377 (422)
|.+|-++++++++.+..
T Consensus 206 d~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 206 VNAAVGALSTALRLGLR 222 (303)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 78899999999886543
No 147
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=53.45 E-value=80 Score=28.44 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=50.1
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc--CC-CccEEEEEccCCCCChHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS--DE-KVKAILVNIFGGIMKCDV 362 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~--d~-~vd~ilv~i~~~~~~~~~ 362 (422)
++|++++...+... -..+++..+|++.....-..++.+.+.-.++++.+++ .| ++++|+. ..|.
T Consensus 126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-------~~d~ 198 (287)
T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-------LNDT 198 (287)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-------SSHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-------CCcH
Confidence 48999986543221 1347788888764322112455666665566666655 56 8999884 2477
Q ss_pred HHHHHHHHHHhcCCC
Q 014588 363 IASGIVNAAKQVALK 377 (422)
Q Consensus 363 ~a~~i~~~~~~~~~~ 377 (422)
+|.++++++++.+..
T Consensus 199 ~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 199 MAIGAMAAARERGLT 213 (287)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 888999998886543
No 148
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=53.26 E-value=77 Score=28.40 Aligned_cols=78 Identities=19% Similarity=0.179 Sum_probs=50.5
Q ss_pred eEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHH
Q 014588 293 EIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 293 ~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
+|++++...+... -..+++..+|+......-..++.+.+...++++.++ +.|.+++|+. ..+.+|.
T Consensus 133 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~ 205 (292)
T 3k4h_A 133 QIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMA-------TDDLIGL 205 (292)
T ss_dssp CEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEE-------SSHHHHH
T ss_pred eEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEE-------cChHHHH
Confidence 8999986644322 234778888876543322345566666455555444 5689999984 2477888
Q ss_pred HHHHHHHhcCCC
Q 014588 366 GIVNAAKQVALK 377 (422)
Q Consensus 366 ~i~~~~~~~~~~ 377 (422)
++++++++.+..
T Consensus 206 g~~~al~~~g~~ 217 (292)
T 3k4h_A 206 GVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHhCCC
Confidence 999999886543
No 149
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=53.18 E-value=23 Score=35.99 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=50.8
Q ss_pred HHHHHHHHc-CCCCCCeeeeCCHHHHHHHHhHhCCCCCeEEEEEeeccCCCCCCCccCCCcceEEEC---CHHHHHHHHH
Q 014588 34 QGAELMAKY-GINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV---KKEEVEDLAG 109 (422)
Q Consensus 34 ~ak~lL~~~-GIpvp~~~~~~s~~ea~~~a~~l~~g~~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~---~~ee~~~a~~ 109 (422)
..+.+|.+- =+|..+++.+.++++.....+.+ . .+|+||...++ | .||.++ +.++..+..+
T Consensus 330 l~~~~lgEe~il~~VpT~~c~~~~~~~~vl~~l--~--~lViKp~~g~g--g---------~gv~iG~~~s~~e~~~~~~ 394 (474)
T 3n6x_A 330 MIRFYLGEEPILSNVPTYQLSKADDLKYVLDNL--A--ELVVKEVQGSG--G---------YGMLVGPAASKQELEDFRQ 394 (474)
T ss_dssp HHHHHHCSCCSSEECCCEETTSHHHHHHHHHSG--G--GEEEEECCCE----------------EEGGGCCHHHHHHHHH
T ss_pred HHHHhCCHhhhccCCCceecCCHHHHHHHHhch--h--heEEEecCCCC--C---------CceEECCcCCHHHHHHHHH
Confidence 344444442 23445567778899998888888 3 79999965332 2 368887 8888887777
Q ss_pred HHhcccccccccCCCCcccceEEEEeecCCC
Q 014588 110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLV 140 (422)
Q Consensus 110 ~l~~~~~~~~~~~~~g~~~~~vlVee~i~~g 140 (422)
++..+. ..++.||+++..
T Consensus 395 ~i~~~p-------------~~yIaQe~v~ls 412 (474)
T 3n6x_A 395 RILANP-------------ANYIAQPTLALS 412 (474)
T ss_dssp HHHHSG-------------GGEEEEECCCCC
T ss_pred HHHhCC-------------CCEEEeeccCCc
Confidence 775432 368888888643
No 150
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=50.99 E-value=69 Score=28.76 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=50.8
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
.+|++++...+... -..+++..+|+......-..++.+.+...++++.++ ..|.+++|+. ..+.+|
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 200 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFC-------NSDSIA 200 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEE-------SSHHHH
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEE-------cCCHHH
Confidence 37999986544322 134778888876543233355666666444444444 5688999984 247888
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
.++++++++.+..
T Consensus 201 ~g~~~al~~~g~~ 213 (289)
T 3g85_A 201 LGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999886543
No 151
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=50.19 E-value=60 Score=31.34 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=39.6
Q ss_pred CCCeEEEEEcCccHH---------HHHHHHHHHCCCCCCCe---ee---ccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 290 LDGEIGCMVNGAGLA---------MATMDIIKLHGGTPANF---LD---VGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 290 ~~g~vaiitngGG~g---------v~~~D~l~~~G~~~~NP---lD---l~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
+..+|+|++-|+|.. -.+...++..|+++... .. .-...+.++ .+-|..++.||+||+|+....
T Consensus 4 ~~D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~R-a~dL~~a~~Dp~i~aI~~~rG 82 (346)
T 4eys_A 4 MVSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEAR-AEDLIHAFSDDSIDMILCAIG 82 (346)
T ss_dssp CCCEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHH-HHHHHHHHHCTTCCEEEECCC
T ss_pred cCcEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHH-HHHHHHHhhCCCCCEEEEccc
Confidence 346899999999863 34567899999865221 11 111112222 233555668999999996443
No 152
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=49.90 E-value=58 Score=31.00 Aligned_cols=98 Identities=7% Similarity=0.001 Sum_probs=60.1
Q ss_pred CCeee-ccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHH
Q 014588 319 ANFLD-VGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQ 391 (422)
Q Consensus 319 ~NPlD-l~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~ 391 (422)
-=|.| =-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..+
T Consensus 19 vTPf~~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~---~grvpviaGvg~~~t~~ 94 (318)
T 3qfe_A 19 VTFFDSKTDTLDLASQERYYAYLAR-SGLTGLVILGTNAEAFLLTREERAQLIATARKAV---GPDFPIMAGVGAHSTRQ 94 (318)
T ss_dssp CCCEETTTTEECHHHHHHHHHHHHT-TTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHH---CTTSCEEEECCCSSHHH
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHH-cCCCEEEeCccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEeCCCCCHHH
Confidence 34666 5678888999999999986 589999985333211 2233 233333332 34689999888776666
Q ss_pred HHH---HHHHcCC-------Ccccc---cCHHHHHHHHHHHhh
Q 014588 392 GKR---ILKESGM-------TLITA---EDLDDAAEKAVKAIA 421 (422)
Q Consensus 392 ~~~---~L~~~Gi-------p~~vf---~~~e~Av~al~~~~~ 421 (422)
+.+ ..++.|. | +.| .+.+..++.+..++.
T Consensus 95 ai~la~~a~~~Gadavlv~~P-~y~~kp~~~~~l~~~f~~ia~ 136 (318)
T 3qfe_A 95 VLEHINDASVAGANYVLVLPP-AYFGKATTPPVIKSFFDDVSC 136 (318)
T ss_dssp HHHHHHHHHHHTCSEEEECCC-CC---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCC-cccCCCCCHHHHHHHHHHHHh
Confidence 655 3444552 5 123 256666666666553
No 153
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=49.90 E-value=30 Score=29.72 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=59.0
Q ss_pred HHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEcc--CCCCChHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 308 MDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIF--GGIMKCDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 308 ~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~--~~~~~~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
.+.|+.+|..+-+|.|-... ..+. |..-++.+.+ .|.+++++- .+.....-.+-.+.-+.. .+|||++..
T Consensus 33 ~~~l~~~G~~v~~P~~~~~~-~~~~i~~~d~~~i~~---aD~vVA~ldpf~g~~~D~GTafEiGyA~A---lgKPVi~l~ 105 (161)
T 2f62_A 33 RELLKKENVMPLIPTDNEAT-EALDIRQKNIQMIKD---CDAVIADLSPFRGHEPDCGTAFEVGCAAA---LNKMVLTFT 105 (161)
T ss_dssp HHHHHTTTCEEECTTTTCCS-SHHHHHHHHHHHHHH---CSEEEEECCCCSSSSCCHHHHHHHHHHHH---TTCEEEEEC
T ss_pred HHHHHHCCCEEECCCccCcc-hHHHHHHHHHHHHHh---CCEEEEEecCCCCCCCCCcHHHHHHHHHH---CCCEEEEEE
Confidence 46677777766667664332 2333 5666666654 588888753 333333334444443332 489999864
Q ss_pred CCCCH-H---------------H---HHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 385 EGTNV-D---------------Q---GKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 385 ~g~~~-~---------------~---~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
..... . + ..-.+...++- ++.++++|++++.+...
T Consensus 106 ~d~r~~~~~~~~~~d~~g~~vedf~~~~NLMl~~~~~--~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 106 SDRRNMREKYGSGVDKDNLRVEGFGLPFNLMLYDGVE--VFDSFESAFKYFLANFP 159 (161)
T ss_dssp SCCSCHHHHHTSSBCTTSCBCCCSSCSSCGGGCCSSC--EESSHHHHHHHHHHHSC
T ss_pred cCchhhhhhcccccccccccccccCCcchhhhhhhhe--eeCCHHHHHHHHHHhhc
Confidence 32110 0 0 11133334555 88999999999887653
No 154
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=49.18 E-value=86 Score=28.25 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=48.3
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHH-HcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~l-l~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -..+++..+|++...-.=..++.+.+.-.++++.+ .+.|++++|+. ..|.+|
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~A 201 (290)
T 2rgy_A 129 RKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFC-------ANDTMA 201 (290)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEE-------SSHHHH
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEE-------CCcHHH
Confidence 48999986533211 13467777787542211123555666544444444 45688999884 247788
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
.++++++++.+..
T Consensus 202 ~g~~~al~~~G~~ 214 (290)
T 2rgy_A 202 VSALARFQQLGIS 214 (290)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 8999998886543
No 155
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=49.15 E-value=1.4e+02 Score=28.36 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=59.4
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQG 392 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~ 392 (422)
-=|.|=-|..+.+.+.+-++-+.+ .++|+|+++-..|-. ..++ +.+..++.. +...||++..++++..++
T Consensus 43 vTPF~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~---~grvpViaGvg~~st~ea 118 (332)
T 2r8w_A 43 ITPADEAGRVDIEAFSALIARLDA-AEVDSVGILGSTGIYMYLTREERRRAIEAAATIL---RGRRTLMAGIGALRTDEA 118 (332)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHHH-HTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHH---TTSSEEEEEECCSSHHHH
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEecCCCCHHHH
Confidence 456655688999999999999987 589999975433211 2233 233333333 236899988888766666
Q ss_pred HHH---HHHcC-------CCcccccCHHHHHHHHHHHh
Q 014588 393 KRI---LKESG-------MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 393 ~~~---L~~~G-------ip~~vf~~~e~Av~al~~~~ 420 (422)
.+. .++.| -|++.-.+.+..++-+.+++
T Consensus 119 i~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA 156 (332)
T 2r8w_A 119 VALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVA 156 (332)
T ss_dssp HHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 543 34445 25222235666665555554
No 156
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=49.14 E-value=83 Score=28.03 Aligned_cols=77 Identities=26% Similarity=0.327 Sum_probs=50.8
Q ss_pred CeEEEEEcCccH----HHHHHHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 292 GEIGCMVNGAGL----AMATMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 292 g~vaiitngGG~----gv~~~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
++|++++...+. ---..+++..+|+.....+ ..++.+.+. +..+-+.+.+.|.+++|+. ..+.+|.+
T Consensus 119 ~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g 190 (280)
T 3gyb_A 119 THIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFS-------SNDITAIG 190 (280)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEE-------CChHHHHH
Confidence 389999877664 0112367777887654333 556666665 4444555556789999984 24778889
Q ss_pred HHHHHHhcCC
Q 014588 367 IVNAAKQVAL 376 (422)
Q Consensus 367 i~~~~~~~~~ 376 (422)
+++++++.+.
T Consensus 191 ~~~al~~~g~ 200 (280)
T 3gyb_A 191 ALGAARELGL 200 (280)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCC
Confidence 9999888654
No 157
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=48.87 E-value=75 Score=29.02 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=58.1
Q ss_pred eEEEEEcCccHHHHHHHHHHHC-CCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHH
Q 014588 293 EIGCMVNGAGLAMATMDIIKLH-GGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAA 371 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~-G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~ 371 (422)
||+|+...|.+|-..+.++... |.++.--+|...+ ++.++. .+.|.++- +. .... . ...+..+
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~d---------l~~~~~-~~~DvvID-fT-~p~a---~-~~~~~~a 65 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDP---------LSLLTD-GNTEVVID-FT-HPDV---V-MGNLEFL 65 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCC---------THHHHH-TTCCEEEE-CS-CTTT---H-HHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCC---------HHHHhc-cCCcEEEE-cc-ChHH---H-HHHHHHH
Confidence 6888888899999999998765 5544333333211 222232 24675542 22 2111 1 2333333
Q ss_pred HhcCCCCcEEEEeCCCCHHHHHHHHHH----c-CCCcccccCHHHHHHHHHHHhh
Q 014588 372 KQVALKVPVVVRLEGTNVDQGKRILKE----S-GMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 372 ~~~~~~kpivv~~~g~~~~~~~~~L~~----~-Gip~~vf~~~e~Av~al~~~~~ 421 (422)
.+ .++|+|++..|-..+ ..+.|++ + ++|+..-++..-.+..+.++++
T Consensus 66 ~~--~g~~~VigTTG~~~e-~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~ 117 (245)
T 1p9l_A 66 ID--NGIHAVVGTTGFTAE-RFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAK 117 (245)
T ss_dssp HH--TTCEEEECCCCCCHH-HHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHH
T ss_pred HH--cCCCEEEcCCCCCHH-HHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHH
Confidence 33 479998875554333 2233333 3 8884444455555555555543
No 158
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=48.35 E-value=33 Score=30.53 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=37.2
Q ss_pred eeccCCCCHH---HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 322 LDVGGNASEG---QVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 322 lDl~g~~~~~---~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
+-+.|..+.. .+.+.|..+.++++++.|++ |.+||.. .-+..|.+.++. .++||++.+.|
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v---~a~~~I~~~i~~--~~~pV~~~v~g 94 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSI---SAGMAIYDTMVL--APCDIATYAMG 94 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHH--CSSCEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCH---HHHHHHHHHHHh--cCCCEEEEECc
Confidence 4455555543 45666666677777777665 6777633 335667777776 46888765444
No 159
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=48.25 E-value=45 Score=26.76 Aligned_cols=83 Identities=6% Similarity=0.001 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCC--CccEEEEEccCCCC-Ch--HHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCC--
Q 014588 330 EGQVVEAFKILTSDE--KVKAILVNIFGGIM-KC--DVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMT-- 402 (422)
Q Consensus 330 ~~~~~~al~~ll~d~--~vd~ilv~i~~~~~-~~--~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip-- 402 (422)
.+.+.+.+..+..+. +.+.+++.+.+-.. ++ -..-..+.+.+++ .+..++++ +. .+..++.|+..|+.
T Consensus 30 a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~--~g~~l~l~--~~-~~~v~~~l~~~gl~~~ 104 (130)
T 2kln_A 30 AEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLR--RGIVFAMA--RV-KQDLRESLRAASLLDK 104 (130)
T ss_dssp HHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHT--TTEEEEEE--CC-SSHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHH--CCCEEEEE--cC-CHHHHHHHHHcCChhh
Confidence 456777777666542 66777775543211 11 1122233333333 34444443 22 13456778887761
Q ss_pred c---ccccCHHHHHHHHH
Q 014588 403 L---ITAEDLDDAAEKAV 417 (422)
Q Consensus 403 ~---~vf~~~e~Av~al~ 417 (422)
+ .+|+|.++|+.++-
T Consensus 105 ~~~~~i~~t~~~Al~~~~ 122 (130)
T 2kln_A 105 IGEDHIFMTLPTAVQAFR 122 (130)
T ss_dssp HCTTEEESCHHHHHHHHT
T ss_pred cCcceeECCHHHHHHHHH
Confidence 1 38999999998753
No 160
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=47.08 E-value=55 Score=32.95 Aligned_cols=122 Identities=10% Similarity=0.016 Sum_probs=62.2
Q ss_pred CeEEEEEcCccHHHH---HHHHHHH------CCCC-------------CCCe-eeccCCCCHHHHHHHHHHHHcCCCccE
Q 014588 292 GEIGCMVNGAGLAMA---TMDIIKL------HGGT-------------PANF-LDVGGNASEGQVVEAFKILTSDEKVKA 348 (422)
Q Consensus 292 g~vaiitngGG~gv~---~~D~l~~------~G~~-------------~~NP-lDl~g~~~~~~~~~al~~ll~d~~vd~ 348 (422)
.++.++|-||+ |+| .+++... .|+. ..|| +|..--...-.-++.+-+-. .|+
T Consensus 174 ~G~~LVtGGG~-GlMEaa~aGA~~a~s~qr~~GG~vIGIiP~~L~~~E~~N~~vtelIiv~~m~eRK~~mv~~----SDA 248 (460)
T 3bq9_A 174 RGLNICTGCGP-GAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRC----AHG 248 (460)
T ss_dssp TTCEEEECCSS-GGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTTSCCCTTCSEEEECSSHHHHHHHHHHH----CSE
T ss_pred CCCEEEeCCcH-HHhhHHHhhHHhhcccccCCCCEEEEEeChhhhhhhhcCCCCCeEEEECCHHHHHHHHHHh----CCE
Confidence 35778887775 877 6688877 4652 2344 22110000011123332222 356
Q ss_pred EEEEccCCCCChHHHHHHHHHHHH-h-cCCCCcEEEEeC---CCCHHHHHHHHHH------cCCCcccccCHHHHHHHHH
Q 014588 349 ILVNIFGGIMKCDVIASGIVNAAK-Q-VALKVPVVVRLE---GTNVDQGKRILKE------SGMTLITAEDLDDAAEKAV 417 (422)
Q Consensus 349 ilv~i~~~~~~~~~~a~~i~~~~~-~-~~~~kpivv~~~---g~~~~~~~~~L~~------~Gip~~vf~~~e~Av~al~ 417 (422)
++ .++||....+++.+.+.-..- . ...+|||++.-. ......-...+.. ..--+++.+||+++++.+.
T Consensus 249 fI-aLPGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~~~~~~iiv~ddpeEal~~l~ 327 (460)
T 3bq9_A 249 IV-IFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMH 327 (460)
T ss_dssp EE-ECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTTGGGGCEEEESCHHHHHHHHH
T ss_pred EE-EcCCCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcchhhcCcEEEeCCHHHHHHHHH
Confidence 54 478887777777776653321 1 114799987631 1112222222221 1111236799999999886
Q ss_pred HH
Q 014588 418 KA 419 (422)
Q Consensus 418 ~~ 419 (422)
..
T Consensus 328 ~~ 329 (460)
T 3bq9_A 328 AG 329 (460)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 161
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=46.65 E-value=37 Score=32.68 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=39.8
Q ss_pred CCeEEEEEcCccHH-------HHHHHHHHHCCCCCC---Cee---eccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLA-------MATMDIIKLHGGTPA---NFL---DVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~g-------v~~~D~l~~~G~~~~---NPl---Dl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
+.+|+|++-|++.. -.+...++..|+++. |-. ......+.++ .+-|..++.||+||+|+....|
T Consensus 12 GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~R-a~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 12 GDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSR-VQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHH-HHHHHHHHHCTTEEEEEESCCC
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHH-HHHHHHHhhCCCCCEEEEcccc
Confidence 34999999999965 245678889998642 111 1222223333 3445556689999999964443
No 162
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=46.18 E-value=1.8e+02 Score=26.65 Aligned_cols=117 Identities=9% Similarity=0.053 Sum_probs=61.0
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeee-ccCCCCHHHHHHHHH-HHHcCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLD-VGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlD-l~g~~~~~~~~~al~-~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++..-+... -..+++...+... ..+. ..++.+.+...+.++ ++.+.|++++|+. ..+.+
T Consensus 129 ~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~-------~nD~~ 200 (316)
T 1tjy_A 129 AKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGW-EIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIA-------PDANA 200 (316)
T ss_dssp EEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTE-EEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEE-------CSTTH
T ss_pred CEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCc-EEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEEE-------CCCcc
Confidence 48999975433221 1235555443211 1122 235666666444444 4555788999884 23567
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 364 ASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 364 a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
|.++++++++.+.++..++...+ ..+..+.+...-+.-.++.++.+..+..++
T Consensus 201 A~g~~~al~~~G~~dv~VvG~D~--~~~~~~~i~~g~l~ttv~~~~~~~g~~a~~ 253 (316)
T 1tjy_A 201 LPAAAQAAENLKRNNLAIVGFST--PNVMRPYVQRGTVKEFGLWDVVQQGKISVY 253 (316)
T ss_dssp HHHHHHHHHHTTCCSCEEEEBCC--HHHHHHHHHHTSCSEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEEeCC--CHHHHHHHHCCCccEEEecCHHHHHHHHHH
Confidence 88888888875422333333322 344455554432422355666654444443
No 163
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=46.10 E-value=99 Score=29.25 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCee-eccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHH
Q 014588 319 ANFL-DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQ 391 (422)
Q Consensus 319 ~NPl-Dl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~ 391 (422)
-=|. |=-|..+.+.+.+-++.+.+ .++|+++++-..| .. ..++ +.+..++.. +...||++..++ +..+
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~---~grvpViaGvg~-st~~ 94 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQ-NGIEVIVPNGNTGEFYALTIEEAKQVATRVTELV---NGRATVVAGIGY-SVDT 94 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHH-TTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSEEEEEECS-SHHH
T ss_pred eccccCCCCCCCHHHHHHHHHHHHH-cCCCEEEECcccCChhhCCHHHHHHHHHHHHHHh---CCCCeEEecCCc-CHHH
Confidence 3455 54588999999999999987 4899998642222 11 2233 233333333 246899988877 6777
Q ss_pred HHHH---HHHcC-------CCcccccCHHHHHHHHHHHhh
Q 014588 392 GKRI---LKESG-------MTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 392 ~~~~---L~~~G-------ip~~vf~~~e~Av~al~~~~~ 421 (422)
+.+. .++.| -|++.-.+.+..++-+.+++.
T Consensus 95 ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 134 (314)
T 3d0c_A 95 AIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIE 134 (314)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 6553 34455 262222466666666655553
No 164
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=45.46 E-value=31 Score=31.30 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=48.9
Q ss_pred CeEEEEEcCccH--H----HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q 014588 292 GEIGCMVNGAGL--A----MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 292 g~vaiitngGG~--g----v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
++|++++...+. . --..+++..+|++.....-..++.+.+.-.++++.+++.+++|+|++ ..+.+|.
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-------~~d~~a~ 198 (290)
T 3clk_A 126 RQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-------ASDMTAI 198 (290)
T ss_dssp CSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-------SSHHHHH
T ss_pred CEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-------CCcHHHH
Confidence 378888654221 1 12346788888765332223455666655555555555778999884 2477888
Q ss_pred HHHHHHHhcCCC
Q 014588 366 GIVNAAKQVALK 377 (422)
Q Consensus 366 ~i~~~~~~~~~~ 377 (422)
++++++++.+..
T Consensus 199 g~~~al~~~g~~ 210 (290)
T 3clk_A 199 GILNQASSFGIE 210 (290)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999998886543
No 165
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=45.40 E-value=1.5e+02 Score=27.82 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=56.6
Q ss_pred cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHH-hcCC-CCcEEEEeCCCCHHHHHH---HH
Q 014588 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAK-QVAL-KVPVVVRLEGTNVDQGKR---IL 396 (422)
Q Consensus 325 ~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~-~~~~-~kpivv~~~g~~~~~~~~---~L 396 (422)
-|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++- ..+++... ..+. +.||++..++++..++.+ ..
T Consensus 22 dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er-~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a 99 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIE-NGIDAVVPVGTTGESATLTHEEH-RTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFA 99 (301)
T ss_dssp TTEECHHHHHHHHHHHHH-TTCCEEECSSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 577888889999999886 689999974333211 22332 22333322 2223 689998887776666655 34
Q ss_pred HHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 397 KESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 397 ~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
++.|. |++.-.+.+..++.+.+++.
T Consensus 100 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 131 (301)
T 3m5v_A 100 KEHGADGILSVAPYYNKPTQQGLYEHYKAIAQ 131 (301)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 44563 63333466666666655543
No 166
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=45.33 E-value=35 Score=29.43 Aligned_cols=115 Identities=14% Similarity=-0.014 Sum_probs=56.6
Q ss_pred eEEEEEcCccHHHHHH--HHHHHCCCC--------------CCCe-eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 293 EIGCMVNGAGLAMATM--DIIKLHGGT--------------PANF-LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 293 ~vaiitngGG~gv~~~--D~l~~~G~~--------------~~NP-lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
++.++|-||. |+|.+ +.+.+.|+. ..|| ++..-....-+-++.+-.-+ .|++++ +++
T Consensus 33 g~~lV~Ggg~-GiM~aa~~gAl~~gG~tiGV~~~~~~p~e~~~~~~~~~~~~~~~f~~Rk~~~~~~----sda~iv-lpG 106 (171)
T 1weh_A 33 GFGLACGGYQ-GGMEALARGVKAKGGLVVGVTAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDL----GAGYLA-LPG 106 (171)
T ss_dssp TEEEEECCSS-THHHHHHHHHHHTTCCEEECCCGGGCTTSCSSCTTCSEECCCSSHHHHHHHHHHH----EEEEEE-CSC
T ss_pred CCEEEeCChh-hHHHHHHHHHHHcCCcEEEEeccccCcccccccCCCceeeecCCHHHHHHHHHHh----CCEEEE-eCC
Confidence 5777776654 87765 777777762 2344 22111111111223322222 356554 677
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHH----HH--HHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 356 GIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVD----QG--KRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 356 ~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~----~~--~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
+....+++.+.+.-..-...++|| ++.- |.... ++ ...-. .- +++.+||+++++.+..
T Consensus 107 G~GTl~El~e~lt~~q~g~~~~kP-vll~-g~~~~l~~~~gfi~~~~~-~~--~~~~~~~~e~~~~l~~ 170 (171)
T 1weh_A 107 GVGTLAELVLAWNLLYLRRGVGRP-LAVD-PYWLGLLKAHGEIAPEDV-GL--LRVVADEEDLRRFLRS 170 (171)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCSCC-EEEC-GGGGGTCCCBTTBCHHHH-TT--SEECCSHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhCccCCCe-EEEC-cchhhhHhhcCCCChhhc-Ce--EEEeCCHHHHHHHHHh
Confidence 766667777666433211114699 5443 21110 00 00111 11 4588999999988754
No 167
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=45.18 E-value=1.7e+02 Score=27.86 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=55.4
Q ss_pred ceecC-CC-eEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHH------------HHHHHHHHHcCCCccEEEE
Q 014588 286 NYIGL-DG-EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQ------------VVEAFKILTSDEKVKAILV 351 (422)
Q Consensus 286 ~~~~~-~g-~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~------------~~~al~~ll~d~~vd~ilv 351 (422)
+|..+ +. |||||..|..........+...|..+.--.| .+.++ ...-++-+++++++|+|+|
T Consensus 19 ~~~~Mm~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d----~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I 94 (361)
T 3u3x_A 19 YFQSMMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHE----KDDALAAEFSAVYADARRIATAEEILEDENIGLIVS 94 (361)
T ss_dssp -------CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEEC----SCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEE
T ss_pred hhhhhccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEc----CCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEE
Confidence 34444 33 8999998764434455566555543221122 22221 1133677788999999997
Q ss_pred EccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCCc
Q 014588 352 NIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMTL 403 (422)
Q Consensus 352 ~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip~ 403 (422)
..+ ...-++-+..+++. +|+|++= ....+.+++.+ ..+++|+.+
T Consensus 95 ~tp-----~~~H~~~~~~al~a---GkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 95 AAV-----SSERAELAIRAMQH---GKDVLVDKPGMTSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp CCC-----HHHHHHHHHHHHHT---TCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred eCC-----hHHHHHHHHHHHHC---CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 433 23334444555543 7888774 33434455444 455678873
No 168
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=44.33 E-value=74 Score=24.27 Aligned_cols=69 Identities=10% Similarity=-0.094 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHhHhCCCC--CeEEEEEeeccCCCCCCCccCCCcceEEEC-CHHHHHH
Q 014588 30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDH--KELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED 106 (422)
Q Consensus 30 L~e~~ak~lL~~~GIpvp~~~~~~s~~ea~~~a~~l~~g~--~PvVlK~~~~~g~rgk~~~~s~~~GGV~l~-~~ee~~~ 106 (422)
.+=..+|++|++.|||.-..-+-.+++ +.+...++..|. -|+|+=. . |-+..+ +++++++
T Consensus 15 p~C~~aK~~L~~~gi~y~~idi~~d~~-~~~~~~~~~~G~~tVP~I~i~--------D--------g~~l~~~~~~el~~ 77 (92)
T 2lqo_A 15 GYCLRLKTALTANRIAYDEVDIEHNRA-AAEFVGSVNGGNRTVPTVKFA--------D--------GSTLTNPSADEVKA 77 (92)
T ss_dssp SSHHHHHHHHHHTTCCCEEEETTTCHH-HHHHHHHHSSSSSCSCEEEET--------T--------SCEEESCCHHHHHH
T ss_pred HhHHHHHHHHHhcCCceEEEEcCCCHH-HHHHHHHHcCCCCEeCEEEEe--------C--------CEEEeCCCHHHHHH
Confidence 444579999999999975444444554 333333331021 3665311 1 336778 9999999
Q ss_pred HHHHHhccc
Q 014588 107 LAGKMLGQI 115 (422)
Q Consensus 107 a~~~l~~~~ 115 (422)
+.+++.+..
T Consensus 78 ~L~el~gL~ 86 (92)
T 2lqo_A 78 KLVKIAGLE 86 (92)
T ss_dssp HHHHHHCCS
T ss_pred HHHHhcCCc
Confidence 999887654
No 169
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=44.29 E-value=1.3e+02 Score=27.72 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=57.8
Q ss_pred CeEEEEEcCccHHH-HHHHHHHHCCCCCCCeeecc-------CCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAM-ATMDIIKLHGGTPANFLDVG-------GNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv-~~~D~l~~~G~~~~NPlDl~-------g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
.||+|+|...-.-- ...+.++..|..+..|.... |..+.+.+.++++.+ .+++.|+|++-.+.++... .+
T Consensus 147 ~rvgvltp~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l-~~~gadaIvLg~CT~l~~~-~~ 224 (273)
T 2xed_A 147 QRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSL-DLSEVDALVISCAVQMPSL-PL 224 (273)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHS-CCTTCSEEEEESSSSSCCT-TH
T ss_pred CeEEEEcCChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHH-hhCCCCEEEEcCCCCcchH-Hh
Confidence 48999997665433 77799999998754332221 234556677888777 6788999997523333321 12
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCC
Q 014588 364 ASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMT 402 (422)
Q Consensus 364 a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip 402 (422)
.+.+-+ . .++||+- .+..-.+..++..|+.
T Consensus 225 ~~~le~---~--lg~PVid----s~~a~a~~~l~~~g~~ 254 (273)
T 2xed_A 225 VETAER---E--FGIPVLS----AATAGAYSILRSLDLP 254 (273)
T ss_dssp HHHHHH---H--HSSCEEE----HHHHHHHHHHHHTTCC
T ss_pred HHHHHH---H--hCCCEEc----HHHHHHHHHHHHcCCC
Confidence 222222 1 2578752 1122344556666654
No 170
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=44.08 E-value=1.2e+02 Score=28.28 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=51.1
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCH---HH-----HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE---GQ-----VVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~---~~-----~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
|||||..|.......+..+...|.++.--.|....... +. ...-++.+++++++|+|++..+. ...+
T Consensus 6 rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~-----~~h~ 80 (336)
T 2p2s_A 6 RFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIP-----CDRA 80 (336)
T ss_dssp EEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCG-----GGHH
T ss_pred EEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCCh-----hhHH
Confidence 79999876432223345555445432212222211110 01 12335677889999999975442 2223
Q ss_pred HHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCCc
Q 014588 365 SGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMTL 403 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip~ 403 (422)
+-+..+++. +|+|++- ....+.+++.+ ..++.|+.+
T Consensus 81 ~~~~~al~a---GkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (336)
T 2p2s_A 81 ELALRTLDA---GKDFFTAKPPLTTLEQLDAVQRRVAETGRKF 120 (336)
T ss_dssp HHHHHHHHT---TCEEEECSSCCSCHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 344444443 6777653 22333444433 445678773
No 171
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=44.00 E-value=1.1e+02 Score=28.17 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=51.1
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
++|++++...+... -..+++..+|++.....-..++.+.+.-.++++.+++. ++++|+. ..|.+|.
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ai~~-------~~d~~A~ 252 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLER-GATSAVV-------SHDTVAV 252 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHT-TCCEEEE-------SCHHHHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhcc-CCCEEEE-------CChHHHH
Confidence 48999976533221 13478888887653222234566666655666666665 7889884 2477888
Q ss_pred HHHHHHHhcCCCCc
Q 014588 366 GIVNAAKQVALKVP 379 (422)
Q Consensus 366 ~i~~~~~~~~~~kp 379 (422)
++++++++.+...|
T Consensus 253 g~~~al~~~G~~vP 266 (332)
T 2o20_A 253 GLLSAMMDKGVKVP 266 (332)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCc
Confidence 99999888654333
No 172
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=43.86 E-value=76 Score=29.45 Aligned_cols=66 Identities=11% Similarity=0.319 Sum_probs=44.8
Q ss_pred cCCCeEEEEEcC-ccHHHHHHHHHHHCCCCC------------------CCeeeccCCCCH-HHHHHHHHHHHcC-CCcc
Q 014588 289 GLDGEIGCMVNG-AGLAMATMDIIKLHGGTP------------------ANFLDVGGNASE-GQVVEAFKILTSD-EKVK 347 (422)
Q Consensus 289 ~~~g~vaiitng-GG~gv~~~D~l~~~G~~~------------------~NPlDl~g~~~~-~~~~~al~~ll~d-~~vd 347 (422)
+|+|++++||-+ +|.|-.++-.+...|.++ .+-+-+..+.+. +.+.++++.+.+. ..+|
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 105 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID 105 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 478999999875 689999999999999731 233444445443 4466666665543 6788
Q ss_pred EEEEEcc
Q 014588 348 AILVNIF 354 (422)
Q Consensus 348 ~ilv~i~ 354 (422)
.++-|..
T Consensus 106 iLVNNAG 112 (273)
T 4fgs_A 106 VLFVNAG 112 (273)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 7776543
No 173
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=43.45 E-value=1.1e+02 Score=28.31 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=50.5
Q ss_pred CeEEEEEcCc-cHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGA-GLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngG-G~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++... +... -..+++..+|++.....-..++.+.+.-.++++.++ ..|.+++|+. ..|.+
T Consensus 178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nd~~ 250 (332)
T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-------GTDEM 250 (332)
T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEE-------SSHHH
T ss_pred CEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-------CChHH
Confidence 4899998654 3221 234788888876533222345566665455555555 4678999884 24778
Q ss_pred HHHHHHHHHhcCCC
Q 014588 364 ASGIVNAAKQVALK 377 (422)
Q Consensus 364 a~~i~~~~~~~~~~ 377 (422)
|-++++++++.+..
T Consensus 251 A~g~~~al~~~G~~ 264 (332)
T 2hsg_A 251 ALGVIHGAQDRGLN 264 (332)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 88999998886543
No 174
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=43.30 E-value=1.8e+02 Score=26.94 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH-
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI- 395 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~- 395 (422)
=|.| -|..+.+.+.+-++.+.+ .++|+++++-..|-. ..++- ..+++...+. ... |++..++++..++.+.
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er-~~v~~~~~~~-~~g-vi~Gvg~~~t~~ai~la 83 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITS-KGVDVVFVAGTTGLGPALSLQEK-MELTDAATSA-ARR-VIVQVASLNADEAIALA 83 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHH-TTCCEEEETSTTTTGGGSCHHHH-HHHHHHHHHH-CSS-EEEECCCSSHHHHHHHH
T ss_pred cCcC-CCccCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHH-HHHHHHHHHH-hCC-EEEeeCCCCHHHHHHHH
Confidence 4778 788999999999999987 589999974333221 22332 3444444332 122 6666777666666553
Q ss_pred --HHHcC-------CCcccc-cCHHHHHHHHHHHhh
Q 014588 396 --LKESG-------MTLITA-EDLDDAAEKAVKAIA 421 (422)
Q Consensus 396 --L~~~G-------ip~~vf-~~~e~Av~al~~~~~ 421 (422)
.++.| -|++.- .+.+..++.+..++.
T Consensus 84 ~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 119 (286)
T 2r91_A 84 KYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCS 119 (286)
T ss_dssp HHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHH
Confidence 44455 252222 466666666655543
No 175
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=43.28 E-value=91 Score=29.06 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=46.7
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHH
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~ 394 (422)
|.|=-| .+.+.+.+-++.+.+ .++|+++++-..| .. ..++ +.+..++.. +...||++..++++..++.+
T Consensus 13 Pf~~dg-iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~---~gr~pvi~Gvg~~~t~~ai~ 87 (291)
T 3a5f_A 13 PFTNTG-VDFDKLSELIEWHIK-SKTDAIIVCGTTGEATTMTETERKETIKFVIDKV---NKRIPVIAGTGSNNTAASIA 87 (291)
T ss_dssp CBCSSS-BCHHHHHHHHHHHHH-TTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSCEEEECCCSSHHHHHH
T ss_pred CcCCCC-cCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEeCCcccHHHHHH
Confidence 454446 888889999999987 5899999743322 11 2333 233333332 23689998888876666655
Q ss_pred H---HHHcC
Q 014588 395 I---LKESG 400 (422)
Q Consensus 395 ~---L~~~G 400 (422)
. .++.|
T Consensus 88 la~~a~~~G 96 (291)
T 3a5f_A 88 MSKWAESIG 96 (291)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 3 34455
No 176
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=42.94 E-value=60 Score=30.55 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=59.9
Q ss_pred CCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC-C--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHH
Q 014588 319 ANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGI-M--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQG 392 (422)
Q Consensus 319 ~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~-~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~ 392 (422)
-=|.|=-|..+.+.+.+-++-+.+ .++|+++++-..|- . ..++ +.+..++.. +...||++..++++..++
T Consensus 13 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~---~grvpviaGvg~~~t~~a 88 (300)
T 3eb2_A 13 VSPVDAEGRVRADVMGRLCDDLIQ-AGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAA---QRRVPVVAGVASTSVADA 88 (300)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-TTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHH---TTSSCBEEEEEESSHHHH
T ss_pred eccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccCccccCHHHHHHHHHHHHHHh---CCCCcEEEeCCCCCHHHH
Confidence 346666688899999999999986 68999986432221 1 2233 333333333 246899988777666665
Q ss_pred HH---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 393 KR---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 393 ~~---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
.+ ..++.|. |++.-.+.+..++-+..++.
T Consensus 89 i~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~ 127 (300)
T 3eb2_A 89 VAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIAD 127 (300)
T ss_dssp HHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 55 3444553 63333466766666655553
No 177
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=42.76 E-value=1.9e+02 Score=25.97 Aligned_cols=98 Identities=9% Similarity=0.063 Sum_probs=55.9
Q ss_pred eEEEEEcCccHHHH-----HHHHHHHCCCCCCCeee-ccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q 014588 293 EIGCMVNGAGLAMA-----TMDIIKLHGGTPANFLD-VGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS 365 (422)
Q Consensus 293 ~vaiitngGG~gv~-----~~D~l~~~G~~~~NPlD-l~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~ 365 (422)
+|++++..+..... ..+++...|.... ++. ..++.+.+. +..+.+.+.+.|++++|+. ..+.+|.
T Consensus 129 ~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~ 200 (305)
T 3g1w_A 129 EVAVITLPNQLNHQERTTGFKETLEAEFPAIE-VIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFA-------TEANGGV 200 (305)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHHCTTEE-EEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEE-------SSHHHHH
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhhCCCCE-EEEEecCCCCHHHHHHHHHHHHHhCCCceEEEE-------CCCcchh
Confidence 89999865432211 2356666665432 222 245666665 4444555556789999884 2477888
Q ss_pred HHHHHHHhcCCC-CcEEEEeCCCCHHHHHHHHHHcC
Q 014588 366 GIVNAAKQVALK-VPVVVRLEGTNVDQGKRILKESG 400 (422)
Q Consensus 366 ~i~~~~~~~~~~-kpivv~~~g~~~~~~~~~L~~~G 400 (422)
++++++++.+.. ..-++...+. .+....+....
T Consensus 201 g~~~al~~~g~~~di~vig~d~~--~~~~~~~~~~~ 234 (305)
T 3g1w_A 201 GVGDAVRLESRAGEIQIISFDTD--KGTLDLVDEGI 234 (305)
T ss_dssp HHHHHHHHTTCTTTSEEEEESCC--HHHHHHHHTTS
T ss_pred hHHHHHHhcCCCCCeEEEEeCCC--HHHHHHHHcCc
Confidence 999998886532 2233445443 33444554443
No 178
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=42.18 E-value=43 Score=29.32 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 330 EGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 330 ~~~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
.+.+...|..+..+++.+.|++ |.+||.. .-+..|.+.++. .++|+++.++|.
T Consensus 40 a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v---~a~~~I~~~i~~--~~~pV~~~v~g~ 94 (193)
T 1yg6_A 40 ANLIVAQMLFLEAENPEKDIYLYINSPGGVI---TAGMSIYDTMQF--IKPDVSTICMGQ 94 (193)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHH--SSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcCCCH---HHHHHHHHHHHh--cCCCEEEEEeee
Confidence 3446666766666666776665 6777743 334667777776 467888765443
No 179
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=41.74 E-value=1.3e+02 Score=28.11 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=57.0
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHH
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGKR 394 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~ 394 (422)
|.|=- ..+.+.+.+-++.+.+ .++|+++++-..|-. ..++ +.+..++.. +...||++..++++..++.+
T Consensus 14 Pf~~d-~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~---~grvpviaGvg~~~t~~ai~ 88 (292)
T 3daq_A 14 PFTNN-KVNLEALKAHVNFLLE-NNAQAIIVNGTTAESPTLTTDEKELILKTVIDLV---DKRVPVIAGTGTNDTEKSIQ 88 (292)
T ss_dssp CEETT-EECHHHHHHHHHHHHH-TTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSCEEEECCCSCHHHHHH
T ss_pred CcCCC-CcCHHHHHHHHHHHHH-cCCCEEEECccccccccCCHHHHHHHHHHHHHHh---CCCCcEEEeCCcccHHHHHH
Confidence 45444 6777889999999885 689999975332211 2233 333333333 24689999887776666655
Q ss_pred ---HHHHcCC-------CcccccCHHHHHHHHHHHhh
Q 014588 395 ---ILKESGM-------TLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 395 ---~L~~~Gi-------p~~vf~~~e~Av~al~~~~~ 421 (422)
..++.|. |++.-.+.+..++.+..++.
T Consensus 89 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~ 125 (292)
T 3daq_A 89 ASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIAD 125 (292)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 3444552 63333456666666555543
No 180
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=41.56 E-value=2e+02 Score=25.85 Aligned_cols=75 Identities=7% Similarity=-0.057 Sum_probs=47.3
Q ss_pred CCeEEEEEcCccHHHH------HHHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q 014588 291 DGEIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 291 ~g~vaiitngGG~gv~------~~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
.++|++++..-+.... ..+++..+|++.. +..+..+.+. +..+-+.+.+.|++++|+. ..+.+
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~ 199 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFE---ELDVGTDPNQVQSRVKSYFKIHPETNIIFC-------LTSQA 199 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEE---EEECCSCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHH
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEE---EeecCCChHHHHHHHHHHHHhCCCCCEEEE-------cCCcc
Confidence 4589999755443222 3477888877542 2223444555 4444455667899999884 23778
Q ss_pred HHHHHHHHHhcC
Q 014588 364 ASGIVNAAKQVA 375 (422)
Q Consensus 364 a~~i~~~~~~~~ 375 (422)
|.++++++++.+
T Consensus 200 A~g~~~al~~~g 211 (297)
T 3rot_A 200 LDPLGQMLLHPD 211 (297)
T ss_dssp HHHHHHHHHSHH
T ss_pred hHHHHHHHHhcC
Confidence 888888887654
No 181
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=41.53 E-value=54 Score=29.62 Aligned_cols=117 Identities=7% Similarity=-0.021 Sum_probs=59.5
Q ss_pred eEEEEEcCccHHHH------HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 293 EIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 293 ~vaiitngGG~gv~------~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
+|++++...+.... ..+++...|++... ...++.+.+...++++.+++.|++++ ++ . .+.+|.+
T Consensus 138 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~a-i~--~-----~d~~a~g 207 (304)
T 3o1i_D 138 NIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVD--SFWADNDKELQRNLVQRVIDMGNIDY-IV--G-----SAVAIEA 207 (304)
T ss_dssp EEEEECCCC-----CHHHHHHHHTTTTBTEEEEE--CCCCCSCHHHHHHHHHHHHHHSCCSE-EE--E-----CHHHHHH
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEE--eecCCCcHHHHHHHHHHHHcCCCCCE-EE--e-----cCcchHH
Confidence 68887654332211 12344444433211 22455566654444444448899999 53 1 3678889
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCH----HHHHHHHHHHh
Q 014588 367 IVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDL----DDAAEKAVKAI 420 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~----e~Av~al~~~~ 420 (422)
+++++++.+....|.+. +....+...+.+.+..+...+...| ..|++.+..+.
T Consensus 208 ~~~al~~~g~~~di~vv-g~d~~p~~~~~i~~g~~~~~~~~~~~~~g~~av~~l~~~i 264 (304)
T 3o1i_D 208 AISELRSADKTHDIGLV-SVYLSHGVYRGLLRNKVLFAPTDKMVQQGRLSVMQAAHYL 264 (304)
T ss_dssp HHHHHTTTTCGGGSEEB-CSSCCHHHHHHHTTTSCCBCCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEE-EeCCCHHHHHHHHcCcceEEEecCHHHHHHHHHHHHHHHH
Confidence 99998875432223221 2223355555665544433355555 45555555443
No 182
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=41.51 E-value=75 Score=28.57 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=44.6
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -..+++..+|+......-..++.+.+. +..+.+.+.+.|++++|+. ..+.+|
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 198 (291)
T 3egc_A 126 TRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLT-------SSHRIT 198 (291)
T ss_dssp CSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEE-------SSHHHH
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEE-------CCcHHH
Confidence 38999976654322 123677888876433222234444444 4444445546789999884 247788
Q ss_pred HHHHHHHHhcCC
Q 014588 365 SGIVNAAKQVAL 376 (422)
Q Consensus 365 ~~i~~~~~~~~~ 376 (422)
.++++++++.+.
T Consensus 199 ~g~~~al~~~g~ 210 (291)
T 3egc_A 199 EGAMQALNVLGL 210 (291)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 899999888653
No 183
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=40.43 E-value=47 Score=31.63 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=49.4
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
...+++|-.|--++... .-+|++.|+. ..-+++..+.+.+.+.+.++.+-+||+|++|+|..+.
T Consensus 53 ~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~-s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPL 121 (303)
T 4b4u_A 53 TPILATILVGDDGASATYVRMKGNACRRVGMD-SLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPV 121 (303)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSC
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCC
Confidence 34677777666666543 3578888886 4456788888999999999999999999999996553
No 184
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=40.12 E-value=1.3e+02 Score=28.07 Aligned_cols=92 Identities=8% Similarity=0.025 Sum_probs=54.4
Q ss_pred cCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH---
Q 014588 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI--- 395 (422)
Q Consensus 325 ~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~--- 395 (422)
-|..+.+.+.+-++.+.+. ++|+++++-..| .. ..++ +.+..++.. +...||++..++++..++.+.
T Consensus 15 dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~---~gr~pviaGvg~~~t~~ai~la~~ 90 (292)
T 2vc6_A 15 DDRIDEVALHDLVEWQIEE-GSFGLVPCGTTGESPTLSKSEHEQVVEITIKTA---NGRVPVIAGAGSNSTAEAIAFVRH 90 (292)
T ss_dssp TTEECHHHHHHHHHHHHHT-TCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSCBEEECCCSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEecCCccHHHHHHHHHH
Confidence 4678888899999999874 899998632222 11 2233 233333332 236899988887766666543
Q ss_pred HHHcC-------CCcccccCHHHHHHHHHHHh
Q 014588 396 LKESG-------MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 396 L~~~G-------ip~~vf~~~e~Av~al~~~~ 420 (422)
.++.| -|++.-.+.+..++.+.+++
T Consensus 91 A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia 122 (292)
T 2vc6_A 91 AQNAGADGVLIVSPYYNKPTQEGIYQHFKAID 122 (292)
T ss_dssp HHHTTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Confidence 34455 25222236666666555554
No 185
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=39.59 E-value=36 Score=29.17 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=53.4
Q ss_pred eEEEEEc---CccHHHHHHHHHHHCCCCCCCeee---ccCCCCHHHHHHHHHHHHcCCCccEEEEE-ccCCCCC----hH
Q 014588 293 EIGCMVN---GAGLAMATMDIIKLHGGTPANFLD---VGGNASEGQVVEAFKILTSDEKVKAILVN-IFGGIMK----CD 361 (422)
Q Consensus 293 ~vaiitn---gGG~gv~~~D~l~~~G~~~~NPlD---l~g~~~~~~~~~al~~ll~d~~vd~ilv~-i~~~~~~----~~ 361 (422)
||+|+.. .-.+.--+.|.+.++|.+.. ++ +.|. . -+.-+.+.+.+..++|+|+.. ..|++.. |.
T Consensus 4 ri~IV~arfn~~~Ll~gA~~~L~~~G~~~~--i~~~~VPGa-f--EiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va~ 78 (156)
T 2b99_A 4 KVGIVDTTFARVDMASIAIKKLKELSPNIK--IIRKTVPGI-K--DLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCAH 78 (156)
T ss_dssp EEEEEEESSCSSCCHHHHHHHHHHHCTTCE--EEEEEESSG-G--GHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHHH
T ss_pred EEEEEEEecchHHHHHHHHHHHHHcCCCCe--EEEEECCcH-H--HHHHHHHHHHhcCCCCEEEEecccCCcchhHHHHH
Confidence 4555442 25566677899999997653 43 3343 2 244566777777889999973 2244432 45
Q ss_pred HHHHHHHHHHHhcCCCCcEEEE
Q 014588 362 VIASGIVNAAKQVALKVPVVVR 383 (422)
Q Consensus 362 ~~a~~i~~~~~~~~~~kpivv~ 383 (422)
+++++|.+..-+ .++||...
T Consensus 79 ~vs~Gl~~v~L~--~~vPV~~g 98 (156)
T 2b99_A 79 EASLGLMLAQLM--TNKHIIEV 98 (156)
T ss_dssp HHHHHHHHHHHH--HTCCEEEE
T ss_pred HHHHHHHHHHhh--hCCCEEEE
Confidence 566777777544 58999876
No 186
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=39.32 E-value=1e+02 Score=28.68 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=52.0
Q ss_pred eEEEEEcCc--cHHH-----HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHH-HHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 293 EIGCMVNGA--GLAM-----ATMDIIKLHGGTPANFLDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 293 ~vaiitngG--G~gv-----~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al-~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
+|++++... .... -..+++..+|+......-..++.+.+.-.+++ +.+.+.|++++|+. ..|.+|
T Consensus 187 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nd~~A 259 (344)
T 3kjx_A 187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLYY-------SNDMIA 259 (344)
T ss_dssp SCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEE-------SSHHHH
T ss_pred eEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEEE-------CCHHHH
Confidence 788887653 2111 13478888888765444445667766644444 44556789999884 247889
Q ss_pred HHHHHHHHhcCCCCc
Q 014588 365 SGIVNAAKQVALKVP 379 (422)
Q Consensus 365 ~~i~~~~~~~~~~kp 379 (422)
-++++++++.+...|
T Consensus 260 ~g~~~al~~~g~~vP 274 (344)
T 3kjx_A 260 AGGLLYLLEQGIDIP 274 (344)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999888654433
No 187
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=39.15 E-value=1.1e+02 Score=27.12 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=49.2
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc--CCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS--DEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~--d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++...+... -..+++..+|++.. -+.++.+.+.-.++++.+++ .|++++|+. ..+.+
T Consensus 119 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-------~~d~~ 188 (277)
T 3cs3_A 119 KKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQGDFTEPSGYAAAKKILSQPQTEPVDVFA-------FNDEM 188 (277)
T ss_dssp SCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEECCSSHHHHHHHHHHHTTSCCCSSEEEEE-------SSHHH
T ss_pred ceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeCCCChhHHHHHHHHHHhcCCCCCcEEEE-------cChHH
Confidence 48999986543221 12367777887543 23455666665566666665 588999884 24778
Q ss_pred HHHHHHHHHhcCCC
Q 014588 364 ASGIVNAAKQVALK 377 (422)
Q Consensus 364 a~~i~~~~~~~~~~ 377 (422)
|.++++++++.+..
T Consensus 189 a~g~~~al~~~g~~ 202 (277)
T 3cs3_A 189 AIGVYKYVAETNYQ 202 (277)
T ss_dssp HHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHcCCC
Confidence 88999998876543
No 188
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=38.87 E-value=25 Score=36.74 Aligned_cols=57 Identities=30% Similarity=0.444 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEc--cCCCC-ChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 327 NASEGQVVEAFKILTSDEKVKAILVNI--FGGIM-KCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 327 ~~~~~~~~~al~~ll~d~~vd~ilv~i--~~~~~-~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
....+.+.++++.+.+|+++++|++.+ +|+.. ....+.+.+.+ +++ .+|||++.+.|
T Consensus 321 ~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~-l~~--~~kPVia~v~g 380 (593)
T 3bf0_A 321 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAA-ARA--AGKPVVVSMGG 380 (593)
T ss_dssp SEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHH-HHH--TTCCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHHHH-HHh--CCCCEEEEECC
Confidence 345677999999999999999999843 44322 22333333333 333 47999976544
No 189
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=38.09 E-value=1.7e+02 Score=27.07 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=49.2
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHCCCCCCCeeecc-CCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVG-GNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~G~~~~NPlDl~-g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++...+.... ..+++..+|+. ..+. ++.+.+.-.++++.++ ..+ +++|+. ..|.+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~----~~~~~~~~~~~~~~~~~~~ll~~~~-~~ai~~-------~nd~~ 242 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIYGAE----VTFHFGHYSVESGEEMAQVVFNNGL-PDALIV-------ASPRL 242 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE----EEEEECCSSHHHHHHHHHHHHHTCC-CSEEEE-------CCHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC----EEEecCCCCHHHHHHHHHHHhcCCC-CcEEEE-------CCHHH
Confidence 389999876443221 34778888876 3333 6667776555555555 556 999884 24788
Q ss_pred HHHHHHHHHhcCCC
Q 014588 364 ASGIVNAAKQVALK 377 (422)
Q Consensus 364 a~~i~~~~~~~~~~ 377 (422)
|-++++++++.+..
T Consensus 243 A~g~~~al~~~G~~ 256 (333)
T 3jvd_A 243 MAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999886643
No 190
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=38.06 E-value=44 Score=31.44 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=48.6
Q ss_pred CeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 292 GEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 292 g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..+++|-.|--++..+ .-+|+..|+. .--.++..+.+.+.+...++.+.+||+|++|+|..+
T Consensus 33 P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlP 99 (281)
T 2c2x_A 33 PGLGTILVGDDPGSQAYVRGKHADCAKVGIT-SIRRDLPADISTATLNETIDELNANPDCTGYIVQLP 99 (281)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEEeCCChhhHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCC
Confidence 5788887776555443 3568888886 344678888899999999999999999999999654
No 191
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=37.92 E-value=29 Score=32.99 Aligned_cols=107 Identities=7% Similarity=0.065 Sum_probs=54.1
Q ss_pred eecCCC-eEEEEEcCccHHH-HHHHHHHHCC-CCCCCeeeccCCCCHHHHHHHHHHHHcC-CCccEEEEEccCCCCChHH
Q 014588 287 YIGLDG-EIGCMVNGAGLAM-ATMDIIKLHG-GTPANFLDVGGNASEGQVVEAFKILTSD-EKVKAILVNIFGGIMKCDV 362 (422)
Q Consensus 287 ~~~~~g-~vaiitngGG~gv-~~~D~l~~~G-~~~~NPlDl~g~~~~~~~~~al~~ll~d-~~vd~ilv~i~~~~~~~~~ 362 (422)
...++. |||||..| ..|- ..+.++.... ..+.--.|.......-+...-++.++++ |++|+|++..+ ...
T Consensus 20 ~~~M~~~rvgiiG~G-~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp-----~~~ 93 (330)
T 4ew6_A 20 FQSMSPINLAIVGVG-KIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMP-----PQY 93 (330)
T ss_dssp CCCCCCEEEEEECCS-HHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSC-----HHH
T ss_pred cccCCCceEEEEecC-HHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCC-----cHH
Confidence 334555 99999864 4555 5667777653 2211111111110000122335556666 99999997433 233
Q ss_pred HHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCC
Q 014588 363 IASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMT 402 (422)
Q Consensus 363 ~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip 402 (422)
-++-+..+++. +|+|++= ....+.+++.+ ..+++|+.
T Consensus 94 H~~~~~~al~a---GkhVl~EKP~a~~~~e~~~l~~~a~~~g~~ 134 (330)
T 4ew6_A 94 RYEAAYKALVA---GKHVFLEKPPGATLSEVADLEALANKQGAS 134 (330)
T ss_dssp HHHHHHHHHHT---TCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHc---CCcEEEeCCCCCCHHHHHHHHHHHHhcCCe
Confidence 34444455543 6777753 33334444433 45566776
No 192
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=37.70 E-value=2.1e+02 Score=26.27 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=50.1
Q ss_pred CeEEEEEcCccHHH-----HHHHHHHHCCCCCCCe-eeccCCCCHHHHHHHH-HHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM-----ATMDIIKLHGGTPANF-LDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv-----~~~D~l~~~G~~~~NP-lDl~g~~~~~~~~~al-~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
.+|++++....... -..+++..+|+...++ +-..+..+.+.-.+++ +++...|++++|+. ..|.+|
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nD~~A 251 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFC-------CNDDLA 251 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-------CChHHH
Confidence 38999975543221 1346778888743332 2234556666544444 44455688999884 247889
Q ss_pred HHHHHHHHhcCCCCc
Q 014588 365 SGIVNAAKQVALKVP 379 (422)
Q Consensus 365 ~~i~~~~~~~~~~kp 379 (422)
-++++++++.+...|
T Consensus 252 ~g~~~al~~~G~~vP 266 (339)
T 3h5o_A 252 IGALARSQQLGIAVP 266 (339)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999988654433
No 193
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=37.50 E-value=32 Score=32.31 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 290 LDGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
....+++|-.|--++..+ .-+|++.|+ .--.++..+.+.+.+...++.+-+||++++|+|..+
T Consensus 26 ~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi--~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlP 93 (276)
T 3ngx_A 26 LEPSLKLIQIGDNEAASIYARAKIRRGKKIGI--AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENP 93 (276)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe--EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCC
Confidence 445788888776665443 357888899 677888899999999999999999999999999654
No 194
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=37.45 E-value=51 Score=31.05 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=50.7
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCC-CC-----CC------eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCCh
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGG-TP-----AN------FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~-~~-----~N------PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~ 360 (422)
|||||..| ..|-..+..+...+. .. .| ..+-.|-. .....++-+++|+++|+|++..+..
T Consensus 7 rigiiG~G-~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~~D~V~i~tp~~---- 78 (329)
T 3evn_A 7 RYGVVSTA-KVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLP---KAYDKLEDMLADESIDVIYVATINQ---- 78 (329)
T ss_dssp EEEEEBCC-TTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCS---CEESCHHHHHTCTTCCEEEECSCGG----
T ss_pred EEEEEech-HHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEEEECCCcH----
Confidence 78999874 456556666665542 11 01 11111110 1123456677899999999744421
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCCc
Q 014588 361 DVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMTL 403 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip~ 403 (422)
..++-+..+++ .+|+|++= ....+.+++.+ ..+++|+.+
T Consensus 79 -~h~~~~~~al~---aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~ 121 (329)
T 3evn_A 79 -DHYKVAKAALL---AGKHVLVEKPFTLTYDQANELFALAESCNLFL 121 (329)
T ss_dssp -GHHHHHHHHHH---TTCEEEEESSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred -HHHHHHHHHHH---CCCeEEEccCCcCCHHHHHHHHHHHHHcCCEE
Confidence 22333334443 36777763 33333444433 455678763
No 195
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=37.18 E-value=70 Score=30.35 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHH------HHHcCCCc
Q 014588 337 FKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRI------LKESGMTL 403 (422)
Q Consensus 337 l~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~------L~~~Gip~ 403 (422)
++-|++||++|+|+|..+. ..-++-...+++. +|+|++= ....+.+++.++ -+++|+.+
T Consensus 67 ~~~ll~~~~iDaV~I~tP~-----~~H~~~~~~al~a---GkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~ 132 (390)
T 4h3v_A 67 WRTLLERDDVQLVDVCTPG-----DSHAEIAIAALEA---GKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS 132 (390)
T ss_dssp HHHHTTCTTCSEEEECSCG-----GGHHHHHHHHHHT---TCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHhcCCCCCEEEEeCCh-----HHHHHHHHHHHHc---CCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence 6788899999999975442 2233444444443 7888763 444456666554 33367763
No 196
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=36.71 E-value=68 Score=32.23 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=40.4
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHH-Hhc-CCCCcEEEEeC---CCCHHHHHHHHHH---cC---CCcccccCHHHHHH
Q 014588 346 VKAILVNIFGGIMKCDVIASGIVNAA-KQV-ALKVPVVVRLE---GTNVDQGKRILKE---SG---MTLITAEDLDDAAE 414 (422)
Q Consensus 346 vd~ilv~i~~~~~~~~~~a~~i~~~~-~~~-~~~kpivv~~~---g~~~~~~~~~L~~---~G---ip~~vf~~~e~Av~ 414 (422)
.|++ |.++||....+++.+.+.-.. ... .++|||++.-. ......-...++. .| .-+.+-+||+++++
T Consensus 248 SDAf-IaLPGG~GTLEELfE~LTw~qLgtgk~h~kPIVLln~~~~~gYwd~Ll~fL~~~v~eg~~~~~~iv~DdpeEvl~ 326 (462)
T 3gh1_A 248 AHGI-IIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIAIDNPAEAAR 326 (462)
T ss_dssp CSEE-EECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHHCGGGGGGCEEEESCHHHHHH
T ss_pred CCEE-EEcCCCcchHHHHHHHHHHHhcccCcCCCCCEEEEcCCCcccHHHHHHHHHHHHhhhhhhhccEEEcCCHHHHHH
Confidence 3664 458888777788877765331 111 15799987632 1122222222222 11 11236789999998
Q ss_pred HHHHH
Q 014588 415 KAVKA 419 (422)
Q Consensus 415 al~~~ 419 (422)
.+...
T Consensus 327 ~i~~~ 331 (462)
T 3gh1_A 327 IMSNA 331 (462)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 197
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=36.60 E-value=2e+02 Score=28.14 Aligned_cols=24 Identities=13% Similarity=-0.087 Sum_probs=18.7
Q ss_pred CeEEEEEcCccHHHHHHHHHHHCCC
Q 014588 292 GEIGCMVNGAGLAMATMDIIKLHGG 316 (422)
Q Consensus 292 g~vaiitngGG~gv~~~D~l~~~G~ 316 (422)
=|+++|..|| .|--.+|.+...+.
T Consensus 16 ~ki~vIGvGg-aG~~ivd~~~~~~~ 39 (389)
T 4ei7_A 16 LKFGFLGLGM-GGCAIAAECANKET 39 (389)
T ss_dssp SCEEEEEEHH-HHHHHHHHHHTCCC
T ss_pred ceEEEEEECC-chHHHHHHHHhccc
Confidence 3899999887 56677899987664
No 198
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=36.46 E-value=59 Score=29.12 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 331 GQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 331 ~~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
+.+...|+.+.+|++++.|++ |.+||.. .-...|.+.++. .++|+++.+.|
T Consensus 60 ~~i~~~L~~l~~~~~~k~I~l~InSPGG~v---~ag~~I~~~i~~--~~~pV~t~v~G 112 (218)
T 1y7o_A 60 NSVIAQLLFLDAQDSTKDIYLYVNTPGGSV---SAGLAIVDTMNF--IKADVQTIVMG 112 (218)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEEECCBCH---HHHHHHHHHHHH--SSSCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcCCCH---HHHHHHHHHHHh--cCCCEEEEEcc
Confidence 446677777777777777665 5666632 234566666666 46888875544
No 199
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=36.35 E-value=1.1e+02 Score=25.91 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=42.2
Q ss_pred eEEEEEcCcc--------------HHHHHHHHHHHCCCCCCCeeeccCCC-CHHHHHHHHHHHHcCCCccEEEEEccCCC
Q 014588 293 EIGCMVNGAG--------------LAMATMDIIKLHGGTPANFLDVGGNA-SEGQVVEAFKILTSDEKVKAILVNIFGGI 357 (422)
Q Consensus 293 ~vaiitngGG--------------~gv~~~D~l~~~G~~~~NPlDl~g~~-~~~~~~~al~~ll~d~~vd~ilv~i~~~~ 357 (422)
|++|||.|=. -|-+.+..+...|..+ ++.+--. +.+...+++.......++|.|+..-..+.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v---~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKI---IGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEE---EEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEE---EEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 8999997731 2446678888888754 3333222 24568888888888888999887544444
Q ss_pred CC
Q 014588 358 MK 359 (422)
Q Consensus 358 ~~ 359 (422)
+.
T Consensus 94 ~~ 95 (178)
T 3iwt_A 94 SP 95 (178)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 200
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=36.17 E-value=1.9e+02 Score=26.10 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=45.1
Q ss_pred eEEEEEcCccHHH------HHHHHHHHCCCCCCCee---eccCCCCHHHHHHHHHH-HHcC-CCccEEEEEccCCCCChH
Q 014588 293 EIGCMVNGAGLAM------ATMDIIKLHGGTPANFL---DVGGNASEGQVVEAFKI-LTSD-EKVKAILVNIFGGIMKCD 361 (422)
Q Consensus 293 ~vaiitngGG~gv------~~~D~l~~~G~~~~NPl---Dl~g~~~~~~~~~al~~-ll~d-~~vd~ilv~i~~~~~~~~ 361 (422)
+|++++..-+... -..+++..+|..+.-++ ...++.+.+.-.++++. +.+. |++++|+. ..+
T Consensus 125 ~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-------~~d 197 (313)
T 3m9w_A 125 NYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVA-------SND 197 (313)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEEE-------SSH
T ss_pred cEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEEE-------CCC
Confidence 8999976544321 12356666632221111 12445566654444444 4455 89999884 247
Q ss_pred HHHHHHHHHHHhcCC
Q 014588 362 VIASGIVNAAKQVAL 376 (422)
Q Consensus 362 ~~a~~i~~~~~~~~~ 376 (422)
.+|.++++++++.+.
T Consensus 198 ~~a~g~~~al~~~G~ 212 (313)
T 3m9w_A 198 ATAGGAIQALSAQGL 212 (313)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHcCC
Confidence 788899999888543
No 201
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=35.68 E-value=50 Score=31.43 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=33.4
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCC
Q 014588 337 FKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMT 402 (422)
Q Consensus 337 l~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip 402 (422)
++-|++|+++|+|+|..+.. .-++-...+++. +|+|++= ....+.+++.+ .-+++|+.
T Consensus 86 ~~ell~~~~iDaV~IatP~~-----~H~~~a~~al~a---GkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 147 (393)
T 4fb5_A 86 WRALIADPEVDVVSVTTPNQ-----FHAEMAIAALEA---GKHVWCEKPMAPAYADAERMLATAERSGKV 147 (393)
T ss_dssp HHHHHHCTTCCEEEECSCGG-----GHHHHHHHHHHT---TCEEEECSCSCSSHHHHHHHHHHHHHSSSC
T ss_pred HHHHhcCCCCcEEEECCChH-----HHHHHHHHHHhc---CCeEEEccCCcccHHHHHHhhhhHHhcCCc
Confidence 67788999999999754421 223333444443 6777662 33334455444 44556765
No 202
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=35.42 E-value=54 Score=30.90 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=49.7
Q ss_pred CCeEEEEEcCccHHHH-----HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLAMA-----TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~gv~-----~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
...+++|-.|--++.. -.-+|+..|+. .-.+.+..+.+.+.+...++.+.+||++++|+|..+.
T Consensus 34 ~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPl 102 (285)
T 3l07_A 34 TPKLVAIIVGNDPASKTYVASKEKACAQVGID-SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPL 102 (285)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSC
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCC
Confidence 4578888777666554 33577888886 4556777788889999999999999999999996553
No 203
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=35.17 E-value=2.2e+02 Score=26.39 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=49.0
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -..+++..+|+.+.. + ..++.+.+. +..+.+++...+.+++|+. ..|.+|
T Consensus 180 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~-~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nD~~A 250 (349)
T 1jye_A 180 QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIA-E-REGDWSAMSGFQQTMQMLNEGIVPTAMLV-------ANDQMA 250 (349)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSE-E-EECCSSHHHHHHHHHHHHHTTCCCSEEEE-------SSHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc-c-ccCCCChHHHHHHHHHHHhCCCCCCEEEE-------CChHHH
Confidence 48999986533211 134788888886422 2 245556555 4444455555678999884 247889
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
-++++++++.+..
T Consensus 251 ~g~~~al~~~G~~ 263 (349)
T 1jye_A 251 LGAMRAITESGLR 263 (349)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999886543
No 204
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.98 E-value=1.7e+02 Score=26.05 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=47.7
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHH--HH-cCCCccEEEEEccCCCCChHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI--LT-SDEKVKAILVNIFGGIMKCDV 362 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~--ll-~d~~vd~ilv~i~~~~~~~~~ 362 (422)
++|++++..-+... -..+++..+|++.. .+ .++.+.+.-.++++. ++ +.|++++|++ ..+.
T Consensus 125 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~ 194 (285)
T 3c3k_A 125 KRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS-RI--SYAENLDYMAGKLATFSLLKSAVKPDAIFA-------ISDV 194 (285)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-EE--EECSSSSHHHHHHHHHHHHSSSSCCSEEEE-------SSHH
T ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce-Ee--ecCCChHHHHHHHHHHHHHcCCCCCeEEEE-------CCHH
Confidence 48999986543211 13467788887654 22 234444444445554 44 4578999884 2477
Q ss_pred HHHHHHHHHHhcCCCCc
Q 014588 363 IASGIVNAAKQVALKVP 379 (422)
Q Consensus 363 ~a~~i~~~~~~~~~~kp 379 (422)
+|.++++++++.+...|
T Consensus 195 ~A~g~~~al~~~g~~vP 211 (285)
T 3c3k_A 195 LAAGAIQALTESGLSIP 211 (285)
T ss_dssp HHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 88899999888654333
No 205
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=34.81 E-value=2.1e+02 Score=25.41 Aligned_cols=87 Identities=10% Similarity=-0.082 Sum_probs=48.1
Q ss_pred CeEEEEEcC--c--cH-H-----HHHHHHHHHCCCCCCCeeec-cCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCC
Q 014588 292 GEIGCMVNG--A--GL-A-----MATMDIIKLHGGTPANFLDV-GGNASEG-QVVEAFKILTSDEKVKAILVNIFGGIMK 359 (422)
Q Consensus 292 g~vaiitng--G--G~-g-----v~~~D~l~~~G~~~~NPlDl-~g~~~~~-~~~~al~~ll~d~~vd~ilv~i~~~~~~ 359 (422)
++|++++.. | +. . --..+++..+|.... ...+ .+..+.+ .+..+.+.+.+.|++++|+..
T Consensus 136 ~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------- 207 (304)
T 3gbv_A 136 REIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACN-ILELNLHADLNIEDSRMLDDFFREHPDVKHGITF------- 207 (304)
T ss_dssp SEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSE-EEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEES-------
T ss_pred CeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcE-EEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEc-------
Confidence 689999832 1 11 1 123477888887542 2222 2333333 355555666678899999851
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 360 CDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
.+. |.++++++++.+.+...++...+.
T Consensus 208 ~d~-a~g~~~al~~~g~~di~vig~d~~ 234 (304)
T 3gbv_A 208 NSK-VYIIGEYLQQRRKSDFSLIGYDLL 234 (304)
T ss_dssp SSC-THHHHHHHHHTTCCSCEEEEESCC
T ss_pred Ccc-hHHHHHHHHHcCCCCcEEEEeCCC
Confidence 233 567888887754423334445443
No 206
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=34.79 E-value=54 Score=31.14 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=48.5
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
...+++|-.|--++..+ .-+|+..|+. .-.+++..+.+.+.+...++.+.+||++++|+|..+
T Consensus 37 ~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlP 104 (300)
T 4a26_A 37 VPGLASIIVGQRMDSKKYVQLKHKAAAEVGMA-SFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLP 104 (300)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSC
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence 34677777776655443 3578888886 455677778888999999999999999999999654
No 207
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=34.59 E-value=43 Score=31.65 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=48.8
Q ss_pred CeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 292 GEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 292 g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..+++|-.|--++.... -+|+..|+. .--.++..+.+.+.+...++.+.+||+|++|+|..+
T Consensus 34 P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlP 100 (288)
T 1b0a_A 34 PGLAVVLVGSNPASQIYVASKRKACEEVGFV-SRSYDLPETTSEAELLELIDTLNADNTIDGILVQLP 100 (288)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-ECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSS
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 57888887765554433 578888886 344678888999999999999999999999999654
No 208
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=34.54 E-value=56 Score=30.82 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=48.6
Q ss_pred CeEEEEEcCccHHHH-----HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 292 GEIGCMVNGAGLAMA-----TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 292 g~vaiitngGG~gv~-----~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..+++|-.|--++.. -.-+|+..|+. .-.+.+..+.+.+.+...++.+.+||++++|+|..+
T Consensus 36 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlP 102 (286)
T 4a5o_A 36 PGLAVILVGTDPASQVYVAHKRKDCEEVGFL-SQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLP 102 (286)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSS
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 467887777665553 33678888886 455677778888999999999999999999999655
No 209
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=32.76 E-value=60 Score=30.57 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=49.0
Q ss_pred CCeEEEEEcCccHHHHH-----HHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMAT-----MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~-----~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
...+++|-.|--++..+ .-+|++.|+. .-.+.+..+.+.+.+...++.+.+||++++|+|..+
T Consensus 33 ~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlP 100 (285)
T 3p2o_A 33 ESCLAVILVGDNPASQTYVKSKAKACEECGIK-SLVYHLNENITQNELLALINTLNHDDSVHGILVQLP 100 (285)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCC
Confidence 45788887776665533 3577888886 455677778888999999999999999999999655
No 210
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=32.57 E-value=2.6e+02 Score=24.69 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=46.2
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHC-CCCCCCeeeccCCCCHHHHHHH-HHHHHcCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLH-GGTPANFLDVGGNASEGQVVEA-FKILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~-G~~~~NPlDl~g~~~~~~~~~a-l~~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++..-+... -..+++..+ |++... ...++.+.+...++ -+.+.+.|++++|+. ..+.+
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~ 206 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVD--SVSGNYDPVTSERVMRQVIDSGIPFDAVYC-------HNDDI 206 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEE--EEECTTCHHHHHHHHHHHHHTTCCCSEEEE-------SSHHH
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEee--eccCCCCHHHHHHHHHHHHHhCCCCCEEEE-------CCchH
Confidence 58999975433221 123566666 543211 14456666654444 444555689999884 24778
Q ss_pred HHHHHHHHHhcCC
Q 014588 364 ASGIVNAAKQVAL 376 (422)
Q Consensus 364 a~~i~~~~~~~~~ 376 (422)
|.++++++++.+.
T Consensus 207 a~g~~~al~~~g~ 219 (293)
T 3l6u_A 207 AMGVLEALKKAKI 219 (293)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 8899999988654
No 211
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=32.48 E-value=1.2e+02 Score=26.95 Aligned_cols=74 Identities=19% Similarity=0.083 Sum_probs=44.9
Q ss_pred eEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 293 EIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 293 ~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
+|++++..-+... -..+++..+|++.... -..++.+ +..+.+.+.+.|.+++|+. ..|.+|.+
T Consensus 124 ~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~~---~~~~~~~l~~~~~~~ai~~-------~~d~~A~g 192 (277)
T 3hs3_A 124 KVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPENNP---YISAQSALNKSNQFDAIIT-------VNDLYAAE 192 (277)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSCH---HHHHHHHHHTGGGCSEEEC-------SSHHHHHH
T ss_pred EEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCch---HHHHHHHHcCCCCCCEEEE-------CCHHHHHH
Confidence 8999976643321 1236777887753221 1223322 4444444445688999883 24788999
Q ss_pred HHHHHHhcCCC
Q 014588 367 IVNAAKQVALK 377 (422)
Q Consensus 367 i~~~~~~~~~~ 377 (422)
+++++++.+..
T Consensus 193 ~~~al~~~g~~ 203 (277)
T 3hs3_A 193 IIKEAKRRNLK 203 (277)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999886543
No 212
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=32.05 E-value=2.2e+02 Score=25.88 Aligned_cols=44 Identities=27% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHc----CCCccEEEEEccCCCCChHHHHHHHHHHHHhcCC
Q 014588 326 GNASEGQVVEAFKILTS----DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 376 (422)
Q Consensus 326 g~~~~~~~~~al~~ll~----d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~ 376 (422)
++.+.+.-.++++.+++ +|++++|+. ..|.+|-++++++++.+.
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-------~nd~~A~g~~~al~~~g~ 228 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDAVLS-------PYDGLSIGIISSLKGVGY 228 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCEEEC-------SSHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEEEEE-------CCCchHHHHHHHHHHcCC
Confidence 44555554455555554 589999883 247889999999988653
No 213
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=32.05 E-value=2e+02 Score=23.27 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=66.6
Q ss_pred CeEEEEEcCc---cH-HHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q 014588 292 GEIGCMVNGA---GL-AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGI 367 (422)
Q Consensus 292 g~vaiitngG---G~-gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i 367 (422)
++|.+-|.+| -. ..+.+..++..|..+ +|++.+.+.+.+.+++.. .+.|.|.+.... +........+
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~V---i~lG~~~p~e~~v~~a~~----~~~d~v~lS~~~--~~~~~~~~~~ 74 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNV---VNIGVLSPQELFIKAAIE----TKADAILVSSLY--GQGEIDCKGL 74 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEE---EEEEEEECHHHHHHHHHH----HTCSEEEEEECS--STHHHHHTTH
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEE---EECCCCCCHHHHHHHHHh----cCCCEEEEEecC--cCcHHHHHHH
Confidence 3555555443 02 235567888888764 678888888876655543 256777765443 2334455666
Q ss_pred HHHHHhcCC-CCcEEEEeCCC------CHHHHHHHHHHcCCCccccc---CHHHHHHHHHHH
Q 014588 368 VNAAKQVAL-KVPVVVRLEGT------NVDQGKRILKESGMTLITAE---DLDDAAEKAVKA 419 (422)
Q Consensus 368 ~~~~~~~~~-~kpivv~~~g~------~~~~~~~~L~~~Gip~~vf~---~~e~Av~al~~~ 419 (422)
++.+++.+. +.+|++ ||. ..++..+.+++.|+- .+|. ++.+.++.+...
T Consensus 75 i~~l~~~g~~~i~v~v--GG~~~~~~~~~~~~~~~~~~~G~d-~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 75 RQKCDEAGLEGILLYV--GGNIVVGKQHWPDVEKRFKDMGYD-RVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp HHHHHHTTCTTCEEEE--EESCSSSSCCHHHHHHHHHHTTCS-EECCTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEE--ECCCcCchHhhhhhHHHHHHCCCC-EEECCCCCHHHHHHHHHHH
Confidence 666666433 345544 332 123335678999995 2333 566666666544
No 214
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=32.04 E-value=71 Score=30.37 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=39.8
Q ss_pred CCeEEEEEcCccHH----HHHHHHHHHCCCCCCC---e---eeccCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q 014588 291 DGEIGCMVNGAGLA----MATMDIIKLHGGTPAN---F---LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFG 355 (422)
Q Consensus 291 ~g~vaiitngGG~g----v~~~D~l~~~G~~~~N---P---lDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~ 355 (422)
..+|+|++.|++.. -.+...++..|+++.. - -..-...+.++.. -|..++.||+||+|+....|
T Consensus 17 Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~-dL~~a~~Dp~i~aI~~~rGG 90 (311)
T 1zl0_A 17 DGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLE-DLHNAFDMPDITAVWCLRGG 90 (311)
T ss_dssp CSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHH-HHHHHHHSTTEEEEEESCCS
T ss_pred cCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHH-HHHHHHhCCCCCEEEEccCC
Confidence 34899999999863 2445778888986421 1 1112223333443 45566689999999974443
No 215
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=31.44 E-value=3e+02 Score=25.07 Aligned_cols=107 Identities=10% Similarity=0.055 Sum_probs=57.9
Q ss_pred CeEEEEEcCccHHH-----HHHHHHHHCCCCCCCeeec-cCCCCHHHHHHHHHH-HHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM-----ATMDIIKLHGGTPANFLDV-GGNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv-----~~~D~l~~~G~~~~NPlDl-~g~~~~~~~~~al~~-ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -..+++..+|+ . ++..+ .++.+.+.-.++++. +.+.|++++|+. ..+.+|
T Consensus 176 ~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~nd~~A 246 (342)
T 1jx6_A 176 TYYSVLYFSEGYISDVRGDTFIHQVNRDNN-F-ELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA-------CSTDVA 246 (342)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHHHHHHHC-C-EEEEEECCCSSHHHHHHHHHHHHHHCCCCSEEEE-------SSHHHH
T ss_pred ceEEEEEcCCcchhhHHHHHHHHHHHhCCC-c-EEEEEecCCCCHHHHHHHHHHHHHhCCCccEEEE-------CCChhH
Confidence 58999986554311 12256666665 2 33322 355566654444444 445788999884 247788
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCH
Q 014588 365 SGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDL 409 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~ 409 (422)
-++++++++.+.+...++... +..+....+.....++.+...|
T Consensus 247 ~g~~~al~~~g~~di~vvg~D--~~~~~~~~~~~g~p~lttv~~~ 289 (342)
T 1jx6_A 247 LGAVDALAELGREDIMINGWG--GGSAELDAIQKGDLDITVMRMN 289 (342)
T ss_dssp HHHHHHHHHHTCTTSEEBCSB--CCHHHHHHHHHTSSCEEEEECT
T ss_pred HHHHHHHHHcCCCCcEEEEeC--CCHHHHHHHHcCCceEEEecCh
Confidence 899998887544222222232 2343344454422344355544
No 216
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=31.32 E-value=1.8e+02 Score=26.12 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=25.3
Q ss_pred cCCCeEEEEEcCc---cHHHHHHHHHHHCCCC
Q 014588 289 GLDGEIGCMVNGA---GLAMATMDIIKLHGGT 317 (422)
Q Consensus 289 ~~~g~vaiitngG---G~gv~~~D~l~~~G~~ 317 (422)
.++|++++||-++ |.|-..+-.+...|.+
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~ 34 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAK 34 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE
Confidence 4789999999843 8999999999999975
No 217
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=31.07 E-value=2.4e+02 Score=26.19 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=54.5
Q ss_pred cCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CC--ChHH---HHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH---
Q 014588 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGG-IM--KCDV---IASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI--- 395 (422)
Q Consensus 325 ~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~-~~--~~~~---~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~--- 395 (422)
-|..+.+.+.+-++.+.+ .++|+++++-..| .. ..++ +.+..++.. +...||++..++++..++.+.
T Consensus 15 dg~iD~~~l~~lv~~li~-~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~---~grvpviaGvg~~~t~~ai~la~~ 90 (297)
T 2rfg_A 15 NGQVDEKALAGLVDWQIK-HGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQA---QGRVPVIAGAGSNNPVEAVRYAQH 90 (297)
T ss_dssp TTEECHHHHHHHHHHHHH-TTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHH---TTSSCBEEECCCSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHHHHHHHHHHHHh---CCCCeEEEccCCCCHHHHHHHHHH
Confidence 467888889999999887 5899999743222 11 2233 233333333 236899988888766666553
Q ss_pred HHHcC-------CCcccccCHHHHHHHHHHHh
Q 014588 396 LKESG-------MTLITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 396 L~~~G-------ip~~vf~~~e~Av~al~~~~ 420 (422)
.++.| -|++.-.+.+..++-+.+++
T Consensus 91 A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va 122 (297)
T 2rfg_A 91 AQQAGADAVLCVAGYYNRPSQEGLYQHFKMVH 122 (297)
T ss_dssp HHHHTCSEEEECCCTTTCCCHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Confidence 34445 25222246666666555554
No 218
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=30.33 E-value=2.6e+02 Score=23.96 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=43.5
Q ss_pred eEEEEEcCc---------cHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q 014588 293 EIGCMVNGA---------GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 293 ~vaiitngG---------G~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
+++|||.|= .-+-+.+..+...|..+... -+.++ +.+.+.++++.++++ +|.|++.-..+.+..|..
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~-~iv~D-d~~~I~~~l~~a~~~--~DlVittGG~g~~~~D~T 80 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRG-FVVMD-DLDEIGWAFRVALEV--SDLVVSSGGLGPTFDDMT 80 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEE-EEECS-CHHHHHHHHHHHHHH--CSEEEEESCCSSSTTCCH
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEE-EEeCC-CHHHHHHHHHHHHhc--CCEEEEcCCCcCCcccch
Confidence 677777763 24455667777777653221 12233 345677777777653 787776433344455555
Q ss_pred HHHHHHHH
Q 014588 364 ASGIVNAA 371 (422)
Q Consensus 364 a~~i~~~~ 371 (422)
.+.+.++.
T Consensus 81 ~ea~a~~~ 88 (172)
T 3kbq_A 81 VEGFAKCI 88 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 56665554
No 219
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=30.30 E-value=50 Score=31.26 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCH---HHHHHHHHHcCCCc
Q 014588 336 AFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNV---DQGKRILKESGMTL 403 (422)
Q Consensus 336 al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~---~~~~~~L~~~Gip~ 403 (422)
-++-|++++++|+|+|..+.. .-++-..++++. +|+|++= ....+. .+..+.-++.|+.+
T Consensus 77 d~~ell~~~~iDaV~I~tP~~-----~H~~~~~~al~a---GkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 140 (350)
T 4had_A 77 SYEEMLASDVIDAVYIPLPTS-----QHIEWSIKAADA---GKHVVCEKPLALKAGDIDAVIAARDRNKVVV 140 (350)
T ss_dssp SHHHHHHCSSCSEEEECSCGG-----GHHHHHHHHHHT---TCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred CHHHHhcCCCCCEEEEeCCCc-----hhHHHHHHHHhc---CCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence 367788899999999854422 223333444443 6777662 223223 33344555677763
No 220
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=30.19 E-value=2.9e+02 Score=24.53 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=48.0
Q ss_pred eEEEEEcCccHHH------HHHHHHHHCCCCCCCeee-ccCCCCHHHHHHHHHHHHcC-C--CccEEEEEccCCCCChHH
Q 014588 293 EIGCMVNGAGLAM------ATMDIIKLHGGTPANFLD-VGGNASEGQVVEAFKILTSD-E--KVKAILVNIFGGIMKCDV 362 (422)
Q Consensus 293 ~vaiitngGG~gv------~~~D~l~~~G~~~~NPlD-l~g~~~~~~~~~al~~ll~d-~--~vd~ilv~i~~~~~~~~~ 362 (422)
+|++++...+... -..+++..+|+.. ++.. ..++.+.+.-.++++.+++. | ++++|+. ..+.
T Consensus 142 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-------~~d~ 213 (309)
T 2fvy_A 142 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKT-EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-------NNDA 213 (309)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHHHTTCCE-EEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-------SSHH
T ss_pred EEEEEEcCCCCccHHHHHHHHHHHHHhcCCce-EEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-------CCch
Confidence 6888876533221 1347778877653 2222 24566666666666666664 4 8999884 2477
Q ss_pred HHHHHHHHHHhcC
Q 014588 363 IASGIVNAAKQVA 375 (422)
Q Consensus 363 ~a~~i~~~~~~~~ 375 (422)
+|.++++++++.+
T Consensus 214 ~a~g~~~al~~~g 226 (309)
T 2fvy_A 214 MAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcC
Confidence 8889999988865
No 221
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=30.00 E-value=73 Score=38.35 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=55.3
Q ss_pred cCCCCHHHHHHHHHHHHcCCC-ccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcE--EEEeCCC-CHHHHHHHHHHcC
Q 014588 325 GGNASEGQVVEAFKILTSDEK-VKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPV--VVRLEGT-NVDQGKRILKESG 400 (422)
Q Consensus 325 ~g~~~~~~~~~al~~ll~d~~-vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpi--vv~~~g~-~~~~~~~~L~~~G 400 (422)
.|..+.+.+.+.++.+.+.-. -..+.+|+.............+++.+.+ .+.|+ +....|. ..++..+.+++.|
T Consensus 615 ~g~~~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~--~gv~i~gv~~~~G~p~~e~~~~~l~~~g 692 (2060)
T 2uva_G 615 GGYYNAQKMSDAISKIEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRA--DGVPIEGLTIGAGVPSIEVANEYIQTLG 692 (2060)
T ss_dssp GGCCSHHHHHHHHHHHGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHT--TTCCEEEEEEESSCCCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhhcccCCCeEecccccCcccchhHHHHHHHHHH--cCCCcceEeecCCCCCHHHHHHHHHHcC
Confidence 345678888888887765321 1345566554322222122344555555 46788 6665554 4556888999999
Q ss_pred CCcc-cccCHHHHHHHHHHHh
Q 014588 401 MTLI-TAEDLDDAAEKAVKAI 420 (422)
Q Consensus 401 ip~~-vf~~~e~Av~al~~~~ 420 (422)
+++. .-.+..+|.++..+++
T Consensus 693 i~~i~~v~~~~~a~~~v~~l~ 713 (2060)
T 2uva_G 693 IRHISFKPGSVDAIQQVINIA 713 (2060)
T ss_dssp CSEEEECCCSHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHH
Confidence 9842 2336777777655544
No 222
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=29.81 E-value=82 Score=30.31 Aligned_cols=78 Identities=19% Similarity=0.091 Sum_probs=44.8
Q ss_pred HHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE---eCCCCHHHHHHHHHHcCCCccccc-CHHH
Q 014588 336 AFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR---LEGTNVDQGKRILKESGMTLITAE-DLDD 411 (422)
Q Consensus 336 al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~---~~g~~~~~~~~~L~~~Gip~~vf~-~~e~ 411 (422)
.++.+++ +++++|++-.+|...-...+.+.|.++.+ .+.|||.+ ..|.- .. ...+.+.|+- ..++ +|+.
T Consensus 237 ~l~a~~~-~g~~GiVle~~G~Gn~p~~~~~~l~~a~~---~Gi~VV~~Src~~G~V-~~-~~~l~~~Gvi-~~~dlt~ek 309 (334)
T 3nxk_A 237 AAKALFE-HGTKGIVVAGSGAGSIHKNQKDVLKELLK---KGLKVVVSSRVVAGCV-AV-SDSDEKLGFI-SAEDLNPQK 309 (334)
T ss_dssp HHHHHHH-TTCCEEEEEEBTTTBCCHHHHHHHHHHHT---TTCEEEEEESSSBSCC-CC-CHHHHHHTEE-ECTTCCHHH
T ss_pred HHHHHHh-CCCCEEEEeeECCCCCcHHHHHHHHHHHH---CCCEEEEeCCCCCCcc-Cc-ccccccCCEE-ECCCCCHHH
Confidence 3444444 67899998666544433566667766654 37888864 22321 11 1245667762 2333 6777
Q ss_pred HHHHHHHHh
Q 014588 412 AAEKAVKAI 420 (422)
Q Consensus 412 Av~al~~~~ 420 (422)
|.-.|+.+.
T Consensus 310 ArikL~~~L 318 (334)
T 3nxk_A 310 ARVLLMLAL 318 (334)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777666554
No 223
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=29.78 E-value=2.1e+02 Score=22.60 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCccEEEEEccCCCCChHH-HHHHHHHHHHhcC-CCCcEEEEeCCCCHHHHHHHHHHcCCC-----ccc
Q 014588 333 VVEAFKILTSDEKVKAILVNIFGGIMKCDV-IASGIVNAAKQVA-LKVPVVVRLEGTNVDQGKRILKESGMT-----LIT 405 (422)
Q Consensus 333 ~~~al~~ll~d~~vd~ilv~i~~~~~~~~~-~a~~i~~~~~~~~-~~kpivv~~~g~~~~~~~~~L~~~Gip-----~~v 405 (422)
+.+.++.+ .++.+.+++.+.. ....|. -...+.+..++.. .+..++++ +. .+..++.|+..|+. .++
T Consensus 38 ~~~~l~~~--~~~~~~vvlDls~-v~~iDssgl~~L~~~~~~~~~~g~~l~l~--~~-~~~v~~~l~~~gl~~~~~~~~i 111 (130)
T 4dgh_A 38 FERVMGSI--QETPQILILRLKW-VPFMDITGIQTLEEMIQSFHKRGIKVLIS--GA-NSRVSQKLVKAGIVKLVGEQNV 111 (130)
T ss_dssp HHHHHHHS--SSCCSEEEEECTT-CCCCCHHHHHHHHHHHHHHHTTTCEEEEE--CC-CHHHHHHHHHTTHHHHHCGGGE
T ss_pred HHHHHHHh--ccCCCEEEEECCC-CCcccHHHHHHHHHHHHHHHHCCCEEEEE--cC-CHHHHHHHHHcCChhhcCcccc
Confidence 44455443 2455677765543 222222 2344444443321 34555443 32 24456677777751 248
Q ss_pred ccCHHHHHHHHHHHh
Q 014588 406 AEDLDDAAEKAVKAI 420 (422)
Q Consensus 406 f~~~e~Av~al~~~~ 420 (422)
|+|.++|+.++....
T Consensus 112 ~~s~~~Al~~~~~~~ 126 (130)
T 4dgh_A 112 YPVFEGALSAALTEI 126 (130)
T ss_dssp ESSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999876654
No 224
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=29.73 E-value=3.1e+02 Score=24.93 Aligned_cols=74 Identities=20% Similarity=0.143 Sum_probs=43.5
Q ss_pred eEEEEEcCccHHH------HHHHHHHHC-CCCCCCeeeccCCCCHHHHHHHH-HHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 293 EIGCMVNGAGLAM------ATMDIIKLH-GGTPANFLDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 293 ~vaiitngGG~gv------~~~D~l~~~-G~~~~NPlDl~g~~~~~~~~~al-~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
+|++++...+... -..+++..+ |++.. ++ ..++.+.+.-.+++ +++.+.|++++|+. ..+.+|
T Consensus 130 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~-~~-~~~~~~~~~~~~~~~~ll~~~~~~~aI~~-------~nd~~A 200 (325)
T 2x7x_A 130 NIVELTGLSGSTPAMERHQGFMAAISKFPDIKLI-DK-ADAAWERGPAEIEMDSMLRRHPKIDAVYA-------HNDRIA 200 (325)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEE-EE-EECTTSHHHHHHHHHHHHHHCSCCCEEEE-------SSTTHH
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEE-ee-ecCCCCHHHHHHHHHHHHHhCCCCCEEEE-------CCCchH
Confidence 8999986533221 123566666 55432 11 23555555544444 44445788999884 135678
Q ss_pred HHHHHHHHhcC
Q 014588 365 SGIVNAAKQVA 375 (422)
Q Consensus 365 ~~i~~~~~~~~ 375 (422)
-++++++++.+
T Consensus 201 ~g~~~al~~~G 211 (325)
T 2x7x_A 201 PGAYQAAKMAG 211 (325)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 88888888754
No 225
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=29.51 E-value=1.3e+02 Score=27.52 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=44.4
Q ss_pred ceecCCCeEEEEEcC-ccHHHHHHHHHHHCCCCC---------------------CCeeeccCCCC-HHHHHHHHHHHHc
Q 014588 286 NYIGLDGEIGCMVNG-AGLAMATMDIIKLHGGTP---------------------ANFLDVGGNAS-EGQVVEAFKILTS 342 (422)
Q Consensus 286 ~~~~~~g~vaiitng-GG~gv~~~D~l~~~G~~~---------------------~NPlDl~g~~~-~~~~~~al~~ll~ 342 (422)
+|-.|+|++++||-| +|.|-.++-.+...|..+ .+..=+..+.+ .+.+.++++.+.+
T Consensus 1 Sy~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp CCGGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 366789999999865 678999999999999631 22222333433 3446666665554
Q ss_pred C-CCccEEEEEc
Q 014588 343 D-EKVKAILVNI 353 (422)
Q Consensus 343 d-~~vd~ilv~i 353 (422)
. ..+|.++-|.
T Consensus 81 ~~G~iDiLVNNA 92 (254)
T 4fn4_A 81 TYSRIDVLCNNA 92 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 3 6788766554
No 226
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=29.16 E-value=2.4e+02 Score=24.63 Aligned_cols=64 Identities=13% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCC-CCcEEEEeCCCCHHHHHHHHHH
Q 014588 326 GNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL-KVPVVVRLEGTNVDQGKRILKE 398 (422)
Q Consensus 326 g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~-~kpivv~~~g~~~~~~~~~L~~ 398 (422)
++.+.+. +..+-+.+.+.|++++|+. ..+.+|.++++++++.+. +...++...+. ..+.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~al~~~g~p~di~vig~d~~--~~~~~~~~~ 232 (276)
T 3ksm_A 167 AGDDRGAARSEMLRLLKETPTIDGLFT-------PNESTTIGALVAIRQSGMSKQFGFIGFDQT--EELEAAMYA 232 (276)
T ss_dssp CCSSHHHHHHHHHHHHHHCSCCCEEEC-------CSHHHHHHHHHHHHHTTCTTSSEEEEESCC--HHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhCCCceEEEE-------CCchhhhHHHHHHHHcCCCCCeEEEEeCCC--HHHHHHHHc
Confidence 4455555 4455555556789999883 247888999999888653 22234445443 334444544
No 227
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=29.02 E-value=1.6e+02 Score=26.48 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEe---CCC
Q 014588 331 GQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL---EGT 387 (422)
Q Consensus 331 ~~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~---~g~ 387 (422)
+.+.++++.+.+ ++++.|++ |.+|+. ..-...|.+..+. .++|+++.. .|.
T Consensus 25 ~~l~~~l~~a~~-~~~~~Ivl~inspGG~---v~~~~~i~~~i~~--~~~PVia~v~p~~G~ 80 (230)
T 3viv_A 25 DQFDRYITIAEQ-DNAEAIIIELDTPGGR---ADAMMNIVQRIQQ--SKIPVIIYVYPPGAS 80 (230)
T ss_dssp HHHHHHHHHHHH-TTCSEEEEEEEBSCEE---HHHHHHHHHHHHT--CSSCEEEEECSTTCE
T ss_pred HHHHHHHHHHhc-CCCCEEEEEEeCCCcC---HHHHHHHHHHHHh--CCCCEEEEEecCCCE
Confidence 345677777665 46888887 455542 2233566666665 689999877 554
No 228
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=28.77 E-value=2.6e+02 Score=26.79 Aligned_cols=72 Identities=7% Similarity=-0.007 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEccCCCC-------ChHHHHHHHHHHHHhcCCCCcEEEEeCCC-CHHHHHHHHHHc
Q 014588 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIM-------KCDVIASGIVNAAKQVALKVPVVVRLEGT-NVDQGKRILKES 399 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~-------~~~~~a~~i~~~~~~~~~~kpivv~~~g~-~~~~~~~~L~~~ 399 (422)
.+.+.|.++++.+.+.+-.|.|-+|+.-+.. ...+....++++.++. .++||.+.+..+ +..+..+++++.
T Consensus 138 ~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~-~~~PV~vKi~p~~~~~~~a~~~~~a 216 (345)
T 3oix_A 138 MSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTY-FTKPLGIKLPPYFDIVHFDQAAAIF 216 (345)
T ss_dssp SSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTT-CCSCEEEEECCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHh
Confidence 3578899999998754444588888753211 1234556777776653 479999986543 455555566554
Q ss_pred C
Q 014588 400 G 400 (422)
Q Consensus 400 G 400 (422)
|
T Consensus 217 g 217 (345)
T 3oix_A 217 N 217 (345)
T ss_dssp T
T ss_pred C
Confidence 4
No 229
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=28.66 E-value=56 Score=31.04 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=48.2
Q ss_pred CeEEEEEcCccHHHHHH-----HHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 292 GEIGCMVNGAGLAMATM-----DIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 292 g~vaiitngGG~gv~~~-----D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
..+++|-.|-=++..+. -+|+..|+. .--.++..+.+.+.+...++.+.+||+|++|+|..+
T Consensus 36 P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlP 102 (301)
T 1a4i_A 36 PRLAILQVGNRDDSNLYINVKLKAAEEIGIK-ATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLP 102 (301)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred CEEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEecc
Confidence 57888877755544332 468888886 445678888898999999999999999999999654
No 230
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=28.55 E-value=2.7e+02 Score=24.58 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=50.9
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeec--cCCC----CHHHHHHHHHHHHcCCCccEEEEEccCCCCC
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDV--GGNA----SEGQVVEAFKILTSDEKVKAILVNIFGGIMK 359 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl--~g~~----~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~ 359 (422)
++|++++...+... -..+++..+|++...-.=. .++. +.+.-.++++.+++. ++|+|+. .
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~-------~ 194 (288)
T 2qu7_A 123 KEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVA-------T 194 (288)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEE-------C
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEEE-------C
Confidence 48999986533211 1236788888764311111 3444 444445566666665 7888884 2
Q ss_pred hHHHHHHHHHHHHhcCCCCc--E-EEEeCCC
Q 014588 360 CDVIASGIVNAAKQVALKVP--V-VVRLEGT 387 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kp--i-vv~~~g~ 387 (422)
.+.+|.++++++++.+...| | ++...+.
T Consensus 195 ~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 225 (288)
T 2qu7_A 195 NHLLLLGALQAIKESEKEIKKDVIIVGFDDS 225 (288)
T ss_dssp SHHHHHHHHHHHHHSSCCBTTTBEEEEESCC
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEeCCh
Confidence 36788899999888653323 3 3445443
No 231
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=28.48 E-value=2.4e+02 Score=22.86 Aligned_cols=116 Identities=21% Similarity=0.068 Sum_probs=63.8
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCCC----CCe-----------ee-ccCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGTP----ANF-----------LD-VGGNASEGQVVEAFKILTSDEKVKAILVNIF 354 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~~----~NP-----------lD-l~g~~~~~~~~~al~~ll~d~~vd~ilv~i~ 354 (422)
+.+|.|+. +|..|...+..+...|..+ .|| .+ +.++.... ..++.. .-.+.|.+++...
T Consensus 19 ~~~v~IiG-~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~---~~l~~~-~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 19 SKYIVIFG-CGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEF---ETLKEC-GMEKADMVFAFTN 93 (155)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSH---HHHHTT-TGGGCSEEEECSS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCH---HHHHHc-CcccCCEEEEEeC
Confidence 34788875 6889999999999998621 010 11 12333322 122211 0135788776433
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccccCHHHHHHHHHHHhh
Q 014588 355 GGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 355 ~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~~~ 421 (422)
.+.....+....+.......+++...+... .+.|++.|+. ++...+.++..+..+..
T Consensus 94 -----~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~---~~~l~~~G~~--vi~p~~~~a~~l~~~l~ 150 (155)
T 2g1u_A 94 -----DDSTNFFISMNARYMFNVENVIARVYDPEK---IKIFEENGIK--TICPAVLMIEKVKEFII 150 (155)
T ss_dssp -----CHHHHHHHHHHHHHTSCCSEEEEECSSGGG---HHHHHTTTCE--EECHHHHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHHHHCCCCeEEEEECCHHH---HHHHHHCCCc--EEcHHHHHHHHHHHHHh
Confidence 233344455555542234455555544422 3467788988 77666677777666543
No 232
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=28.43 E-value=67 Score=29.89 Aligned_cols=93 Identities=17% Similarity=0.035 Sum_probs=56.2
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC--ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH---
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM--KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI--- 395 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~--~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~--- 395 (422)
|.|=-|..+.+.+.+-++.+.+. +|+++++-..|-. -+.+--..+++...+ +.||++..++++..++.+.
T Consensus 9 Pf~~dg~iD~~~l~~lv~~li~~--v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~---rvpviaGvg~~~t~~ai~la~~ 83 (283)
T 2pcq_A 9 PFDREGRLDEEAFRELAQALEPL--VDGLLVYGSNGEGVHLTPEERARGLRALRP---RKPFLVGLMEETLPQAEGALLE 83 (283)
T ss_dssp CBCTTCCBCHHHHHHHHHHHGGG--SSCCEETCTTTTGGGSCHHHHHHHHHTCCC---SSCCEEEECCSSHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHhh--CCEEEECCcCcCchhcCHHHHHHHHHHHHh---CCcEEEeCCCCCHHHHHHHHHH
Confidence 44445788889999999999886 9999974332212 222222344444433 6899988888766666553
Q ss_pred HHHcC-------CCccccc---CHHHHHHHHHHHh
Q 014588 396 LKESG-------MTLITAE---DLDDAAEKAVKAI 420 (422)
Q Consensus 396 L~~~G-------ip~~vf~---~~e~Av~al~~~~ 420 (422)
.++.| -| .|. +.+..++.+..++
T Consensus 84 A~~~Gadavlv~~P--~y~~~~~~~~l~~~f~~va 116 (283)
T 2pcq_A 84 AKAAGAMALLATPP--RYYHGSLGAGLLRYYEALA 116 (283)
T ss_dssp HHHHTCSEEEECCC--CTTGGGTTTHHHHHHHHHH
T ss_pred HHhcCCCEEEecCC--cCCCCCCHHHHHHHHHHHh
Confidence 34445 26 443 4455555554443
No 233
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=28.35 E-value=35 Score=27.00 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcC--CCCcEEEEeCCC
Q 014588 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA--LKVPVVVRLEGT 387 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~--~~kpivv~~~g~ 387 (422)
.+.+...++++.+++++++..|+++-. +|+.+-+...++. ...|+++-..+.
T Consensus 36 ~~~ee~~~~~~~l~~~~digIIlIte~--------ia~~i~~~i~~~~~~~~~P~IieIPs~ 89 (102)
T 2i4r_A 36 TSDEEIVKAVEDVLKRDDVGVVIMKQE--------YLKKLPPVLRREIDEKVEPTFVSVGGT 89 (102)
T ss_dssp CSHHHHHHHHHHHHHCSSEEEEEEEGG--------GSTTSCHHHHTTTTTCCSSEEEEEC--
T ss_pred CCHHHHHHHHHHHhhCCCeEEEEEeHH--------HHHHHHHHHHHHHhCCCccEEEEECCC
Confidence 345679999999999999999998432 2222222222222 368998876554
No 234
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=28.29 E-value=1.8e+02 Score=26.32 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=61.1
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHCCCCCCCeee-ccCCCCHHHHHHHHHHHHc-C---CCccEEEEEccCCCCCh
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLHGGTPANFLD-VGGNASEGQVVEAFKILTS-D---EKVKAILVNIFGGIMKC 360 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~G~~~~NPlD-l~g~~~~~~~~~al~~ll~-d---~~vd~ilv~i~~~~~~~ 360 (422)
++|++++...+.... ..+++..+|. .+++. ..++.+.+.-.++++.+++ . |++++|++ ..
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~-------~n 199 (306)
T 2vk2_A 129 CNVVELQGTVGASVAIDRKKGFAEAIKNAPN--IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA-------HN 199 (306)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHTTTCTT--EEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEEE-------SS
T ss_pred CeEEEEEcCCCChhHHHHHHHHHHHHhhCCC--eEEEEeccCCCcHHHHHHHHHHHHHhCCCCCCeeEEEE-------CC
Confidence 479999765332211 2244444443 12333 2456666655555555554 4 78999884 24
Q ss_pred HHHHHHHHHHHHhcCCCCc--E-EEEeCCCCHHHHHHHHHHcCCCcc---cccCHHHHHHHHHHH
Q 014588 361 DVIASGIVNAAKQVALKVP--V-VVRLEGTNVDQGKRILKESGMTLI---TAEDLDDAAEKAVKA 419 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~~~kp--i-vv~~~g~~~~~~~~~L~~~Gip~~---vf~~~e~Av~al~~~ 419 (422)
+.+|.++++++++.+...| | ++...+. ..+...+..-.+... .+.--..|++.+..+
T Consensus 200 d~~A~g~~~al~~~G~~vP~di~vig~D~~--~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~~ 262 (306)
T 2vk2_A 200 DDMVIGAIQAIKEAGLKPGKDILTGSIDGV--PDIYKAMMDGEANASVELTPNMAGPAFDALEKY 262 (306)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTBEEEEEECC--HHHHHHHHTTCCCEEEECCSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCCCCeEEEeecCC--HHHHHHHHcCCceEEEecCHHHHHHHHHHHHHH
Confidence 7788899999888654333 3 3334332 333333443333211 333345666666554
No 235
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=28.06 E-value=1.8e+02 Score=23.35 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=56.3
Q ss_pred CCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHH-HHHHHHH
Q 014588 291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDV-IASGIVN 369 (422)
Q Consensus 291 ~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~-~a~~i~~ 369 (422)
.+.+.|+...|.+-..+++.+...=.... +. -..+....+++.+.. ....|. -...+..
T Consensus 28 ~~~v~v~~~~G~L~f~~a~~~~~~l~~~~------~~-------------~~~~~~~~vvlDls~-v~~iDssgl~~L~~ 87 (143)
T 3llo_A 28 IPGIKIFQINAPIYYANSDLYSSALKRKT------GV-------------NGSENIHTVILDFTQ-VNFMDSVGVKTLAG 87 (143)
T ss_dssp CTTEEEEEECSCHHHHHHHHHHHC------------------------------CCSEEEEECTT-CCCCCHHHHHHHHH
T ss_pred CCCeEEEEeCCCeEechHHHHHHHHHHHH------cc-------------CCCCCceEEEEECCC-CccccHHHHHHHHH
Confidence 35688998888888777777765321110 00 012466777775543 222222 2234444
Q ss_pred HHHhcC-CCCcEEEEeCCCCHHHHHHHHHHcCCC------cccccCHHHHHHHH
Q 014588 370 AAKQVA-LKVPVVVRLEGTNVDQGKRILKESGMT------LITAEDLDDAAEKA 416 (422)
Q Consensus 370 ~~~~~~-~~kpivv~~~g~~~~~~~~~L~~~Gip------~~vf~~~e~Av~al 416 (422)
..++.. .+..++++ +. .+..++.|+..|+. .++|+|.++|+.++
T Consensus 88 ~~~~~~~~g~~l~l~--~~-~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~ 138 (143)
T 3llo_A 88 IVKEYGDVGIYVYLA--GC-SAQVVNDLTSNRFFENPALKELLFHSIHDAVLGS 138 (143)
T ss_dssp HHHHHHTTTCEEEEE--SC-CHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHT
T ss_pred HHHHHHHCCCEEEEE--eC-CHHHHHHHHhCCCeeccCccceEECcHHHHHHHH
Confidence 443321 34555443 32 24567788888863 25899999999864
No 236
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=27.84 E-value=3.3e+02 Score=25.99 Aligned_cols=98 Identities=11% Similarity=0.031 Sum_probs=59.1
Q ss_pred CeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC---ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH-
Q 014588 320 NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM---KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI- 395 (422)
Q Consensus 320 NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~---~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~- 395 (422)
=|.|=-|..+.+.+.+-++.+.+ .++|+|+++-..|-. ..++- ..+++.... ...||++..++++..++.+.
T Consensus 36 TPF~~dg~ID~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr-~~vi~~~~~--grvpViaGvg~~st~eai~la 111 (344)
T 2hmc_A 36 TPCRQDRTPDFDALVRKGKELIA-DGMSAVVYCGSMGDWPLLTDEQR-MEGVERLVK--AGIPVIVGTGAVNTASAVAHA 111 (344)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-TTCCCEEESSGGGTGGGSCHHHH-HHHHHHHHH--TTCCEEEECCCSSHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccCcChhhCCHHHH-HHHHHHHhC--CCCcEEEecCCCCHHHHHHHH
Confidence 35555588999999999999987 589999975332211 22332 233333222 46899988887766666553
Q ss_pred --HHHcC-------CCcccc-cCHHHHHHHHHHHhh
Q 014588 396 --LKESG-------MTLITA-EDLDDAAEKAVKAIA 421 (422)
Q Consensus 396 --L~~~G-------ip~~vf-~~~e~Av~al~~~~~ 421 (422)
.++.| -|++.- .+.+..++-+.+++.
T Consensus 112 ~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 112 VHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILS 147 (344)
T ss_dssp HHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHh
Confidence 34445 252222 466666666666554
No 237
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=27.69 E-value=1.6e+02 Score=25.22 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=42.7
Q ss_pred CCeEEEEEcCc---------c-----HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q 014588 291 DGEIGCMVNGA---------G-----LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGG 356 (422)
Q Consensus 291 ~g~vaiitngG---------G-----~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~ 356 (422)
+-|++|||.|= | -+-+.+..+...|..+... .+..+ +.+.+.++++..+++.++|.|++.-..+
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~-~iv~D-d~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGY-SLVPD-DKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEE-EEECS-CHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEE-EEeCC-CHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 34899999983 3 4566778888888753221 12232 3566888998888766789888643333
Q ss_pred CC
Q 014588 357 IM 358 (422)
Q Consensus 357 ~~ 358 (422)
..
T Consensus 93 ~g 94 (178)
T 2pjk_A 93 YS 94 (178)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 238
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=27.52 E-value=2.4e+02 Score=28.67 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE
Q 014588 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv 382 (422)
.+...++.+.+.|+.++=.-=++|... ++-+.|+++|.||.|.. .| +..+.+.|.+...+ +-||++.
T Consensus 203 t~~~l~~l~~eaGlP~gvv~vv~g~~~-----~~g~~L~~~p~vd~I~F--TG----S~~~G~~i~~~aa~--~lk~v~l 269 (528)
T 3u4j_A 203 TSIRLAELAREAGIPDGVFNVVTGYGD-----PAGQVLAEDPNVDMVAF--TG----SVRVGTKLGEIAAR--TVKRVGL 269 (528)
T ss_dssp HHHHHHHHHHHHTCCTTSEEECCCSST-----THHHHHHHCTTCCEEEE--ES----CHHHHHHHHHHHHT--TTCEEEE
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCCcH-----HHHHHHHhCCCcCEEEE--eC----CHHHHHHHHHHHHh--cCCceEE
Confidence 456677888888876432222334211 24567788999998873 33 24566677666654 4577766
Q ss_pred EeCCC
Q 014588 383 RLEGT 387 (422)
Q Consensus 383 ~~~g~ 387 (422)
-+||.
T Consensus 270 ELGGk 274 (528)
T 3u4j_A 270 ELGGK 274 (528)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 66664
No 239
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=27.29 E-value=2.9e+02 Score=23.44 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=61.5
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcC------------CCccEEEEEccCCCCCh
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSD------------EKVKAILVNIFGGIMKC 360 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d------------~~vd~ilv~i~~~~~~~ 360 (422)
+|.|+-..--..-.....+...|.. -+... .+ ..++++.+.+. ..+|.||+-+..+..+.
T Consensus 63 ~ILiVdDd~~~~~~l~~~L~~~g~~---~v~~a--~~---~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G 134 (206)
T 3mm4_A 63 RVLVVDDNFISRKVATGKLKKMGVS---EVEQC--DS---GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDG 134 (206)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCS---EEEEE--SS---HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC---eeeee--CC---HHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCH
Confidence 8999999999999999999988753 12222 22 23556655542 46899998765544455
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCC-CHHHHHHHHHHcCC
Q 014588 361 DVIASGIVNAAKQVALKVPVVVRLEGT-NVDQGKRILKESGM 401 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~~~kpivv~~~g~-~~~~~~~~L~~~Gi 401 (422)
.++++.|.+.........||++..+.. ......+.+ +.|+
T Consensus 135 ~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~-~~Ga 175 (206)
T 3mm4_A 135 YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI-QAGM 175 (206)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHH-HHTC
T ss_pred HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHH-hCCC
Confidence 556666554322223567888876654 334433433 4454
No 240
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=27.07 E-value=1.2e+02 Score=28.78 Aligned_cols=61 Identities=28% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCCc
Q 014588 335 EAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMTL 403 (422)
Q Consensus 335 ~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip~ 403 (422)
.-++-+++++++|+|++..+. ..-++-+..+++ .+|+|++= ....+.+++.+ ..+++|+.+
T Consensus 55 ~~~~~ll~~~~vD~V~i~tp~-----~~H~~~~~~al~---aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 119 (362)
T 3fhl_A 55 RSFKELTEDPEIDLIVVNTPD-----NTHYEYAGMALE---AGKNVVVEKPFTSTTKQGEELIALAKKKGLML 119 (362)
T ss_dssp SCSHHHHTCTTCCEEEECSCG-----GGHHHHHHHHHH---TTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred CCHHHHhcCCCCCEEEEeCCh-----HHHHHHHHHHHH---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 346677789999999975442 122333344444 36888764 33334455444 455678774
No 241
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=26.94 E-value=1.4e+02 Score=28.01 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHCCCCCCC-eeeccCCCCHHHHH-HHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCC
Q 014588 307 TMDIIKLHGGTPAN-FLDVGGNASEGQVV-EAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 377 (422)
Q Consensus 307 ~~D~l~~~G~~~~N-PlDl~g~~~~~~~~-~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~ 377 (422)
..+++..+|+.... ++-..+..+.+.-. .+-+++...|.+++|+. ..|.+|-++++++++.+..
T Consensus 228 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nD~~A~g~~~al~~~G~~ 293 (366)
T 3h5t_A 228 AMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLC-------TVDALAFGVLEYLKSVGKS 293 (366)
T ss_dssp HHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEE-------CCcHHHHHHHHHHHHcCCC
Confidence 45788888887543 33334566666544 44444556788999984 2478899999999886543
No 242
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=26.86 E-value=2e+02 Score=30.70 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=67.9
Q ss_pred CCeEEEEEcCccH----HHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 291 DGEIGCMVNGAGL----AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 291 ~g~vaiitngGG~----gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
+++|.+-|.+|=. .-+.+.+++..|..+ +|++.+.+++.+.++. .+ .++|.|.++.... ........
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeV---i~lG~~v~~eeiv~aA---~e-~~adiVglSsl~~--~~~~~~~~ 666 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDV---DVGPLFQTPEETARQA---VE-ADVHVVGVSSLAG--GHLTLVPA 666 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEE---EECCTTBCHHHHHHHH---HH-TTCSEEEEEECSS--CHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEE---EeCCCCCCHHHHHHHH---HH-cCCCEEEEeeecH--hHHHHHHH
Confidence 4577766665421 135677888889886 6788888888654444 33 4678877754432 34455677
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCCcccc--cCHHHHHHHHHHH
Q 014588 367 IVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITA--EDLDDAAEKAVKA 419 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip~~vf--~~~e~Av~al~~~ 419 (422)
+++.+++.+... |.+..||.........+++.|+.-+.. .+..+.++.+...
T Consensus 667 vi~~L~~~G~~~-i~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~ 720 (727)
T 1req_A 667 LRKELDKLGRPD-ILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKK 720 (727)
T ss_dssp HHHHHHHTTCTT-SEEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC-CEEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHH
Confidence 777777754322 333445422222335678888852122 2455555555443
No 243
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=26.62 E-value=3e+02 Score=27.87 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE
Q 014588 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv 382 (422)
.+...++.+.+.|+.++=.-=++|+ . ...+.|+++|.+|.|.. .| +..+.+.|.+...+ +-||+..
T Consensus 204 t~~~l~~l~~eaGlP~gvv~vv~g~--~----~~~~~L~~~p~vd~I~F--TG----S~~vG~~i~~~aa~--~lkpv~l 269 (521)
T 4e4g_A 204 VPIRLAELMIEAGLPAGILNVVNGD--K----GAVDAILTHPDIAAVSF--VG----STPIARYVYGTAAM--NGKRAQC 269 (521)
T ss_dssp HHHHHHHHHHHTTCCTTSEEECCCC--H----HHHHHHHTCTTCCEEEE--ES----CHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHHHHHHHHHhCCCcCeEEEEeCC--h----HHHHHHHhCCCcCEEEE--EC----CHHHHHHHHHHHhh--cCCCeee
Confidence 4667788999999875422223442 2 23477889999999873 33 24566666666555 3577766
Q ss_pred EeCCC
Q 014588 383 RLEGT 387 (422)
Q Consensus 383 ~~~g~ 387 (422)
-++|.
T Consensus 270 ELGGk 274 (521)
T 4e4g_A 270 FGGAK 274 (521)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 66663
No 244
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=26.54 E-value=2e+02 Score=30.84 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=49.4
Q ss_pred ceecCCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCH---HHHHHHHHHHHcCCCccEEEEEccC-----CC
Q 014588 286 NYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE---GQVVEAFKILTSDEKVKAILVNIFG-----GI 357 (422)
Q Consensus 286 ~~~~~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~---~~~~~al~~ll~d~~vd~ilv~i~~-----~~ 357 (422)
.|.+++++||+||- +|| .+ -..+. +.+..+++.+.+|+++.+|++.-.+ |.
T Consensus 23 ~~~~~~~~Va~itl-------------------nrP-~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGa 81 (742)
T 3zwc_A 23 EYLRLPHSLAMIRL-------------------CNP-PV-NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGA 81 (742)
T ss_dssp EEEECSTTEEEEEE-------------------CCT-TT-TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCB
T ss_pred eEEEeeCCEEEEEe-------------------CCC-cc-cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCc
Confidence 57788999999983 455 33 22222 2477889999999999999984221 11
Q ss_pred C-------ChHHHHHHHHHHHHhcCCCCcEEEEeCCC
Q 014588 358 M-------KCDVIASGIVNAAKQVALKVPVVVRLEGT 387 (422)
Q Consensus 358 ~-------~~~~~a~~i~~~~~~~~~~kpivv~~~g~ 387 (422)
. ........+.+.+.. .+||+++.+.|.
T Consensus 82 Dl~~~~~~~~~~~~~~~~~~i~~--~~kPvIAai~G~ 116 (742)
T 3zwc_A 82 DIHGFSAFTPGLALGSLVDEIQR--YQKPVLAAIQGV 116 (742)
T ss_dssp CSSSCCSSCSCSHHHHHHHHHHH--CSSCEEEEECSE
T ss_pred ChHhhhccChhHHHHHHHHHHHh--CCCCEEEEECcc
Confidence 0 111122445555555 589999766554
No 245
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.13 E-value=1.4e+02 Score=26.83 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred eEEEEEcCccHHH-----HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHHH
Q 014588 293 EIGCMVNGAGLAM-----ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 293 ~vaiitngGG~gv-----~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll-~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
+|++++...+... -..+++..+|+.... .-+.++.+.+.-.++++.++ ..|++++|+. ..|.+|-+
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~A~g 199 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHGLSASA-TVVTGGTTETEGAEGMHTLLEMPTPPTAVVA-------FNDRCATG 199 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGE-EEECCCSSHHHHHHHHHHHHTSSSCCSEEEE-------SSHHHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCc-cEEECCCCHHHHHHHHHHHHcCCCCCCEEEE-------CChHHHHH
Confidence 7888876554311 133677888876432 22346666666555555555 4689999884 24788999
Q ss_pred HHHHHHhcCCC
Q 014588 367 IVNAAKQVALK 377 (422)
Q Consensus 367 i~~~~~~~~~~ 377 (422)
+++++++.+..
T Consensus 200 ~~~al~~~g~~ 210 (289)
T 3k9c_A 200 VLDLLVRSGRD 210 (289)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999886543
No 246
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=26.00 E-value=2.6e+02 Score=28.05 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE
Q 014588 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv 382 (422)
.+...++.+.+.|+.++-.-=++|... .+-+.|+++|.+|.|.. .| +..+.+.|.+...+ +-||++.
T Consensus 190 t~~~l~~ll~~aGlP~gvv~vv~g~~~-----~~g~~L~~~p~vd~I~f--TG----S~~~G~~i~~~aa~--~l~pv~l 256 (497)
T 3k2w_A 190 ATTELGRIAKEAGLPDGVLNVINGTGS-----VVGQTLCESPITKMITM--TG----STVAGKQIYKTSAE--YMTPVML 256 (497)
T ss_dssp HHHHHHHHHHHTTCCTTSEEECCSCTT-----THHHHHHHCSSEEEEEE--ES----CHHHHHHHHHHHTT--TTCCEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEeCCch-----HHHHHHHhCCCcCEEEE--EC----cHHHHHHHHHHhhh--cCCCeEE
Confidence 456677888888887542222334221 34456778999998873 33 24566677666544 3577776
Q ss_pred EeCCC
Q 014588 383 RLEGT 387 (422)
Q Consensus 383 ~~~g~ 387 (422)
-++|.
T Consensus 257 ElGGk 261 (497)
T 3k2w_A 257 ELGGK 261 (497)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 66664
No 247
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=25.98 E-value=94 Score=28.12 Aligned_cols=80 Identities=24% Similarity=0.208 Sum_probs=48.2
Q ss_pred eEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccC---CCCHHH-H--HHHHHHHHcCCCccEEEEEccCCCCCh
Q 014588 293 EIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGG---NASEGQ-V--VEAFKILTSDEKVKAILVNIFGGIMKC 360 (422)
Q Consensus 293 ~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g---~~~~~~-~--~~al~~ll~d~~vd~ilv~i~~~~~~~ 360 (422)
+|++++...+... -..+++..+|+......-..+ +.+.+. + ..+.+.+...|.+++|+. ..
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~ 205 (301)
T 3miz_A 133 RIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMS-------GN 205 (301)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEE-------SS
T ss_pred eEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEE-------CC
Confidence 8999986544321 133678888876433222233 333332 3 344444545689999984 24
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 014588 361 DVIASGIVNAAKQVALKVP 379 (422)
Q Consensus 361 ~~~a~~i~~~~~~~~~~kp 379 (422)
|.+|.++++++++.+...|
T Consensus 206 d~~A~g~~~al~~~g~~vP 224 (301)
T 3miz_A 206 DEMAIQIYIAAMALGLRIP 224 (301)
T ss_dssp HHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 7789999999988654433
No 248
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=25.97 E-value=1.2e+02 Score=29.45 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=53.5
Q ss_pred CceecCCC--eEEEEEcCccHHHHHHHHHHHCCCC---CCCeeeccC--CCCHHHH------------HHHHHHHHcCCC
Q 014588 285 LNYIGLDG--EIGCMVNGAGLAMATMDIIKLHGGT---PANFLDVGG--NASEGQV------------VEAFKILTSDEK 345 (422)
Q Consensus 285 ~~~~~~~g--~vaiitngGG~gv~~~D~l~~~G~~---~~NPlDl~g--~~~~~~~------------~~al~~ll~d~~ 345 (422)
+.+..+.. |||||..| ..|-.-+.++...+.. ...-+++.+ +.+.++. +.-++-|++||+
T Consensus 18 ~~~~~Ms~klrvgiIG~G-~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~ 96 (412)
T 4gqa_A 18 LYFQSMSARLNIGLIGSG-FMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQ 96 (412)
T ss_dssp -------CEEEEEEECCS-HHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTT
T ss_pred CccccccccceEEEEcCc-HHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCC
Confidence 45566755 89999754 4555556666554321 111233332 3333321 123677889999
Q ss_pred ccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHH---HHHcCCC
Q 014588 346 VKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRI---LKESGMT 402 (422)
Q Consensus 346 vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~---L~~~Gip 402 (422)
+|+|+|..+. ..-++-...+++. +|+|++= ....+.+++.++ -++.|+.
T Consensus 97 vD~V~I~tp~-----~~H~~~~~~al~a---GkhVl~EKP~a~~~~ea~~l~~~a~~~g~~ 149 (412)
T 4gqa_A 97 VDVVDITSPN-----HLHYTMAMAAIAA---GKHVYCEKPLAVNEQQAQEMAQAARRAGVK 149 (412)
T ss_dssp CCEEEECSCG-----GGHHHHHHHHHHT---TCEEEEESCSCSSHHHHHHHHHHHHHHTCC
T ss_pred CCEEEECCCc-----HHHHHHHHHHHHc---CCCeEeecCCcCCHHHHHHHHHHHHHhCCe
Confidence 9999974442 2223333444443 6777763 334345555443 3456765
No 249
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=25.95 E-value=3e+02 Score=27.86 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE
Q 014588 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv 382 (422)
.+...++.+.+.|+.++=.-=++|+. .+-+.|+++|.+|.|.. .| +..+.+.|.+...+ +-||++.
T Consensus 192 t~~~l~~ll~eaGlP~gvv~vv~g~~------~~g~~L~~~p~vd~I~F--TG----S~~~G~~i~~~aa~--~lk~v~l 257 (517)
T 3r31_A 192 GALKIAEILIEAGLPKGLFNVIQGDR------DTGPLLVNHPDVAKVSL--TG----SVPTGRKVAAAAAG--HLKHVTM 257 (517)
T ss_dssp HHHHHHHHHHHTTCCTTSEEECCCCT------THHHHHHTCTTEEEEEE--ES----CHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEECCH------HHHHHHHhCCCcCEEec--cC----CHHHHHHHHHHhhc--CCCcEEE
Confidence 46677788888888654222234422 24567789999998873 33 24566777766655 4577776
Q ss_pred EeCCC
Q 014588 383 RLEGT 387 (422)
Q Consensus 383 ~~~g~ 387 (422)
-+||.
T Consensus 258 ElGGk 262 (517)
T 3r31_A 258 ELGGK 262 (517)
T ss_dssp ECCCC
T ss_pred EcCCc
Confidence 66664
No 250
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=25.85 E-value=2e+02 Score=25.63 Aligned_cols=74 Identities=7% Similarity=0.008 Sum_probs=45.8
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeee-ccCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLD-VGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlD-l~g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++...+... -..+++..+|. ++.- ..++.+.+.-.++++.+++ .|.+++|+. ..|.+
T Consensus 139 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~ 208 (293)
T 2iks_A 139 ETVLYLGALPELSVSFLREQGFRTAWKDDPR---EVHFLYANSYEREAAAQLFEKWLETHPMPQALFT-------TSFAL 208 (293)
T ss_dssp SSEEEEEECTTSHHHHHHHHHHHHHHTTCCC---CEEEEEESSSCHHHHHHHHHHHTTTSCCCSEEEE-------SSHHH
T ss_pred CEEEEEecCcccccHHHHHHHHHHHHHHcCC---CccEEEcCCCChhhHHHHHHHHHhcCCCCCEEEE-------CChHH
Confidence 48999986533221 12356666775 2221 2456666665555555554 578999884 24778
Q ss_pred HHHHHHHHHhcC
Q 014588 364 ASGIVNAAKQVA 375 (422)
Q Consensus 364 a~~i~~~~~~~~ 375 (422)
|.++++++++.+
T Consensus 209 a~g~~~al~~~g 220 (293)
T 2iks_A 209 LQGVMDVTLRRD 220 (293)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 888888887754
No 251
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=25.79 E-value=2.3e+02 Score=21.93 Aligned_cols=79 Identities=10% Similarity=0.088 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCccEEEEEccCCCC-ChHHHHHHHHHHHHhcC--CCCcEEEEeCCCCHHHHHHHHHHcC----CCcc
Q 014588 332 QVVEAFKILTSDEKVKAILVNIFGGIM-KCDVIASGIVNAAKQVA--LKVPVVVRLEGTNVDQGKRILKESG----MTLI 404 (422)
Q Consensus 332 ~~~~al~~ll~d~~vd~ilv~i~~~~~-~~~~~a~~i~~~~~~~~--~~kpivv~~~g~~~~~~~~~L~~~G----ip~~ 404 (422)
.+.+.+...+.+.+...+++...+-.. ++ .-...++...++.. .+.++.++ +. .+..++.|+..| ++
T Consensus 34 ~l~~~l~~~l~~~~~~~vvlDls~v~~iDS-sGl~~L~~~~~~~~~~~g~~l~l~--~~-~~~v~~~l~~~gl~~~~~-- 107 (121)
T 3t6o_A 34 QIASTFLAAMQGAQPRKVLIDLEGVEFFGS-SFIELLVRGWKRIKEDQQGVFALC--SV-SPYCVEVLQVTHIDEVWP-- 107 (121)
T ss_dssp HHHHHHHHTTCCSSSCEEEEECTTCCEECH-HHHHHHHHHHHHHTTSTTCEEEEE--SC-CHHHHHHHTTCSGGGGSC--
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCCEEcH-HHHHHHHHHHHHHHHhcCCEEEEE--eC-CHHHHHHHHHhCccceec--
Confidence 355666555544556777775543211 22 22344455544432 24555443 22 245667777766 46
Q ss_pred cccCHHHHHHHH
Q 014588 405 TAEDLDDAAEKA 416 (422)
Q Consensus 405 vf~~~e~Av~al 416 (422)
+|++.++|++++
T Consensus 108 i~~~~~~Al~~~ 119 (121)
T 3t6o_A 108 RYSTKQEALLAM 119 (121)
T ss_dssp EESSHHHHHHHT
T ss_pred ccCCHHHHHHHh
Confidence 999999999875
No 252
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.08 E-value=1.4e+02 Score=27.07 Aligned_cols=76 Identities=8% Similarity=-0.025 Sum_probs=44.0
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHH-HHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~-ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+.... ..+++..+|+.... + +.++.+. .+..+-+. +...+.+++|+. ..|.+|
T Consensus 145 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~-~-~~~~~~~-~~~~~~~~~l~~~~~~~ai~~-------~nd~~A 214 (305)
T 3huu_A 145 RHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC-V-VIKSMND-LRDFIKQYCIDASHMPSVIIT-------SDVMLN 214 (305)
T ss_dssp CSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE-E-EECSHHH-HHHHC--------CCCSEEEE-------SSHHHH
T ss_pred CeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc-E-EecCcHH-HHHHHHHhhhcCCCCCCEEEE-------CChHHH
Confidence 389999865543222 34788888876543 2 2333333 33333334 445789999984 247889
Q ss_pred HHHHHHHHhcCCC
Q 014588 365 SGIVNAAKQVALK 377 (422)
Q Consensus 365 ~~i~~~~~~~~~~ 377 (422)
-++++++++.+..
T Consensus 215 ~g~~~al~~~g~~ 227 (305)
T 3huu_A 215 MQLLNVLYEYQLR 227 (305)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999886543
No 253
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=25.02 E-value=4.1e+02 Score=24.45 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=57.4
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC--ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH---
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM--KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRI--- 395 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~--~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~--- 395 (422)
|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. -+.+--..+++...+.. .. |++..++++..++.+.
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~-~g-ViaGvg~~~t~~ai~la~~ 86 (288)
T 2nuw_A 10 PFDKQGKVNVDALKTHAKNLLE-KGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVT-HK-LIFQVGSLNLNDVMELVKF 86 (288)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-TTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTC-SC-EEEECCCSCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-CC-eEEeeCCCCHHHHHHHHHH
Confidence 5554578888899999999887 589999974333221 22222344555554421 22 6666777666666553
Q ss_pred HHHcC-------CCcccc-cCHHHHHHHHHHHhh
Q 014588 396 LKESG-------MTLITA-EDLDDAAEKAVKAIA 421 (422)
Q Consensus 396 L~~~G-------ip~~vf-~~~e~Av~al~~~~~ 421 (422)
.++.| -|++.- .+.+..++.+.+++.
T Consensus 87 A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 120 (288)
T 2nuw_A 87 SNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIAR 120 (288)
T ss_dssp HHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHH
Confidence 34445 252222 466666666655553
No 254
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=24.31 E-value=1.4e+02 Score=26.47 Aligned_cols=98 Identities=12% Similarity=0.175 Sum_probs=50.5
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHH
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAK 372 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~ 372 (422)
||++|.. |.+|-..+..+...|.+..--.|....+.. ....++.+++ +++|.+++..+ .+...+.+..+++
T Consensus 2 ~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~--~~~~~~~l~~-~~~DvVv~~~~-----~~~~~~~~~~~l~ 72 (236)
T 2dc1_A 2 LVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRGEHEK--MVRGIDEFLQ-REMDVAVEAAS-----QQAVKDYAEKILK 72 (236)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCCCTT--EESSHHHHTT-SCCSEEEECSC-----HHHHHHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCcchhh--hcCCHHHHhc-CCCCEEEECCC-----HHHHHHHHHHHHH
Confidence 6888876 667777777777767653223333321110 1112333444 67899887443 2233333334443
Q ss_pred hcCCCCcEEEEeCCC-C-H---HHHHHHHHHcCCC
Q 014588 373 QVALKVPVVVRLEGT-N-V---DQGKRILKESGMT 402 (422)
Q Consensus 373 ~~~~~kpivv~~~g~-~-~---~~~~~~L~~~Gip 402 (422)
.++++++...+. . . .+..+..++.|+.
T Consensus 73 ---~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~ 104 (236)
T 2dc1_A 73 ---AGIDLIVLSTGAFADRDFLSRVREVCRKTGRR 104 (236)
T ss_dssp ---TTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred ---CCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence 367776643222 2 2 2333445667887
No 255
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=24.21 E-value=1.4e+02 Score=26.34 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=34.1
Q ss_pred eccCCCCHH---HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 323 DVGGNASEG---QVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 323 Dl~g~~~~~---~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
-++|..++. .+...|..+..++..+.|++ |.+||.. .-+..|.+..+. .++||++...|
T Consensus 31 ~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v---~~~~~I~~~i~~--~~~~V~t~~~G 94 (203)
T 3qwd_A 31 MLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSV---TAGFAIYDTIQH--IKPDVQTICIG 94 (203)
T ss_dssp EECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHH--SSSCEEEEEEE
T ss_pred EEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---HHHHHHHHHHHH--hcCCcEEEEee
Confidence 344444443 45556666666555665554 6777642 334667777776 46788765434
No 256
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=24.11 E-value=3.8e+02 Score=23.75 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=45.9
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHC-CCCCCCeeeccCCCCHHHHHHHHH-HHHcCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLH-GGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~-G~~~~NPlDl~g~~~~~~~~~al~-~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++..-+.... ..+++..+ |++.. + ...++.+.+.-.++++ ++...|++++|+. ..|.+
T Consensus 134 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~-~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nD~~ 204 (288)
T 1gud_A 134 GEVAIIEGKAGNASGEARRNGATEAFKKASQIKLV-A-SQPADWDRIKALDVATNVLQRNPNIKAIYC-------ANDTM 204 (288)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEE-E-EEECTTCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHH
T ss_pred CEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEE-E-eecCCccHHHHHHHHHHHHHhCCCceEEEE-------CCCch
Confidence 489999754332211 23566655 55321 1 1345666666444444 4445688999884 24788
Q ss_pred HHHHHHHHHhcC
Q 014588 364 ASGIVNAAKQVA 375 (422)
Q Consensus 364 a~~i~~~~~~~~ 375 (422)
|-++++++++.+
T Consensus 205 A~g~~~al~~~G 216 (288)
T 1gud_A 205 AMGVAQAVANAG 216 (288)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC
Confidence 999999998854
No 257
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=23.54 E-value=1.7e+02 Score=26.79 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEeCCC-----CHHHHHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 360 CDVIASGIVNAAKQVALKVPVVVRLEGT-----NVDQGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kpivv~~~g~-----~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
.+++++.+++.+++ ++.|++...|+ ...+-.+.+.+.|+++.+.+.+..+..+++.
T Consensus 62 ~~~~~~~i~~~~~~---G~~Va~L~~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~ 122 (264)
T 3ndc_A 62 LDAIIDTIAEAHAA---GQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAAT 122 (264)
T ss_dssp HHHHHHHHHHHHHH---TCCEEEEESBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCeEEEEeCCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHH
Confidence 45666666666554 45566544443 1233455677778887777776665555544
No 258
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Probab=29.27 E-value=17 Score=32.52 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=39.7
Q ss_pred CCCccEEEEE---ccCCCC----ChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHHcCCCcccccCHHHHHH
Q 014588 343 DEKVKAILVN---IFGGIM----KCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKRILKESGMTLITAEDLDDAAE 414 (422)
Q Consensus 343 d~~vd~ilv~---i~~~~~----~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~~L~~~Gip~~vf~~~e~Av~ 414 (422)
...+|+|+.. |-|... -|+.++++|.+..-+ .++||+.. +...+.+++. .++|.+-...+--++|+.
T Consensus 108 ~~~~DAVIaLG~VIrGeT~HfeyVa~~vs~GLm~v~L~--~~vPVifGVLT~~t~eQA~---~RAg~~~k~~NkG~eaA~ 182 (200)
T 1c41_A 108 TGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLD--TGVPVIFGVLTVLTDDQAK---ARAGVIEGSHNHGEDWGL 182 (200)
Confidence 4569999862 223333 356666777776544 58999865 4443445443 334541002333455666
Q ss_pred HHHHHh
Q 014588 415 KAVKAI 420 (422)
Q Consensus 415 al~~~~ 420 (422)
+.++++
T Consensus 183 aAvem~ 188 (200)
T 1c41_A 183 AAVEMG 188 (200)
Confidence 666554
No 259
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=23.48 E-value=43 Score=31.35 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=55.3
Q ss_pred CeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccC--CC-CHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q 014588 292 GEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG--NA-SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV 368 (422)
Q Consensus 292 g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g--~~-~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~ 368 (422)
-||+|+..+|-.|-..+..+.++|.+.--|+|-.. +. ..-+.+..++-+.+++.+|.+++..+. ....+.+.
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~-----~~~~~~~~ 82 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPA-----PFCKDSIL 82 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCG-----GGHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCH-----HHHHHHHH
Confidence 38999999888998888888888865322333221 10 001112223333344568888864442 22333333
Q ss_pred HHHHhcCCCCcEEEE-eCCCCHH---HHHHHHHHcCCC
Q 014588 369 NAAKQVALKVPVVVR-LEGTNVD---QGKRILKESGMT 402 (422)
Q Consensus 369 ~~~~~~~~~kpivv~-~~g~~~~---~~~~~L~~~Gip 402 (422)
++.+ .+++++++ ..|...+ +..+..++.|+.
T Consensus 83 ea~~---~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~ 117 (288)
T 2nu8_A 83 EAID---AGIKLIITITEGIPTLDMLTVKVKLDEAGVR 117 (288)
T ss_dssp HHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 3333 36777655 4443333 344556667774
No 260
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=23.34 E-value=4e+02 Score=23.84 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=44.2
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHH-HHHHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al-~~ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++..-+... -..+++...|++... ...++.+.+...+++ +++.+.|++++|+. ..+.+|
T Consensus 124 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a 194 (313)
T 2h3h_A 124 GKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILNDEEDGARAVSLAEAALNAHPDLDAFFG-------VYAYNG 194 (313)
T ss_dssp SEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEECSSCHHHHHHHHHHHHHHCTTCCEEEE-------CSTTHH
T ss_pred CEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eecCCCCHHHHHHHHHHHHHHCcCceEEEE-------cCCCcc
Confidence 48999986533211 123556666654321 123555666544444 45555789999885 124577
Q ss_pred HHHHHHHHhcC
Q 014588 365 SGIVNAAKQVA 375 (422)
Q Consensus 365 ~~i~~~~~~~~ 375 (422)
.++++++++.+
T Consensus 195 ~g~~~al~~~G 205 (313)
T 2h3h_A 195 PAQALVVKNAG 205 (313)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 78888888754
No 261
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=23.30 E-value=2.7e+02 Score=21.80 Aligned_cols=95 Identities=12% Similarity=0.066 Sum_probs=56.2
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHH
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAK 372 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~ 372 (422)
+|.|+....-..-...+.+...|..+ ... .+ ..++++.+.+. .+|.|++....+..+..++.+.+ +
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~g~~v----~~~--~~---~~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l----~ 74 (154)
T 2rjn_A 9 TVMLVDDEQPILNSLKRLIKRLGCNI----ITF--TS---PLDALEALKGT-SVQLVISDMRMPEMGGEVFLEQV----A 74 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEE----EEE--SC---HHHHHHHHTTS-CCSEEEEESSCSSSCHHHHHHHH----H
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCeE----EEe--CC---HHHHHHHHhcC-CCCEEEEecCCCCCCHHHHHHHH----H
Confidence 79999999888888889998866532 221 22 34666666554 58999986654433433344433 3
Q ss_pred hcCCCCcEEEEeCCCCHHHHHHHHHHcCC
Q 014588 373 QVALKVPVVVRLEGTNVDQGKRILKESGM 401 (422)
Q Consensus 373 ~~~~~kpivv~~~g~~~~~~~~~L~~~Gi 401 (422)
+..+..||++...........+.++..|+
T Consensus 75 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 103 (154)
T 2rjn_A 75 KSYPDIERVVISGYADAQATIDAVNRGKI 103 (154)
T ss_dssp HHCTTSEEEEEECGGGHHHHHHHHHTTCC
T ss_pred HhCCCCcEEEEecCCCHHHHHHHHhccch
Confidence 32246788776554433444444444334
No 262
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=23.30 E-value=97 Score=30.63 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=60.0
Q ss_pred eEEEEEcCccHHHHHHHHHHHCCC------CCCCee----eccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHH
Q 014588 293 EIGCMVNGAGLAMATMDIIKLHGG------TPANFL----DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDV 362 (422)
Q Consensus 293 ~vaiitngGG~gv~~~D~l~~~G~------~~~NPl----Dl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~ 362 (422)
+|.|+.+|| -....+-.+...+. .|.||- +-.-..+.......++.+ +..++|.+++ + ..+.
T Consensus 23 ~ilvlG~gg-re~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a-~~~~id~vv~---g---~E~~ 94 (442)
T 3lp8_A 23 NVLVIGSGG-REHSMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVC-KKEKIELVVI---G---PETP 94 (442)
T ss_dssp EEEEEECSH-HHHHHHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHH-HHTTCCEEEE---C---SHHH
T ss_pred EEEEECCCh-HHHHHHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHH-HHhCCCEEEE---C---CcHH
Confidence 788887664 44555556655542 245651 000111222344445544 4457898875 1 1233
Q ss_pred HHHHHHHHHHhcCCCCcEEEE------eCCCCHHHHHHHHHHcCCCc---ccccCHHHHHHHHH
Q 014588 363 IASGIVNAAKQVALKVPVVVR------LEGTNVDQGKRILKESGMTL---ITAEDLDDAAEKAV 417 (422)
Q Consensus 363 ~a~~i~~~~~~~~~~kpivv~------~~g~~~~~~~~~L~~~Gip~---~vf~~~e~Av~al~ 417 (422)
...++.+.+.+ .+.|++.- ... +-...++.|++.|||. .++.+++++.+.+-
T Consensus 95 l~~~~~~~l~~--~Gi~~~Gp~~~a~~~~~-dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~ 155 (442)
T 3lp8_A 95 LMNGLSDALTE--EGILVFGPSKAAARLES-SKGFTKELCMRYGIPTAKYGYFVDTNSAYKFID 155 (442)
T ss_dssp HHTTHHHHHHH--TTCEEESCCHHHHHHHH-CHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCcEecCCHHHHHHhh-CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHH
Confidence 44566666665 35665510 011 1233566788899984 23567777766543
No 263
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=23.29 E-value=70 Score=33.26 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEc--cC-C-CCChHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 328 ASEGQVVEAFKILTSDEKVKAILVNI--FG-G-IMKCDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 328 ~~~~~~~~al~~ll~d~~vd~ilv~i--~~-~-~~~~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
.+.+.+...|+.+.+|+++++|++.+ +| + .....++.+.|.++.+ .+||+++..
T Consensus 70 ~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~~~I~~~i~~~k~---~gkpvva~~ 127 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRD---SGKPVYAVG 127 (593)
T ss_dssp EEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred cCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHHHHHHHHHHHHHHh---cCCeEEEEE
Confidence 34567888999999999999999854 44 3 2244556666655532 369998764
No 264
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=23.10 E-value=3.8e+02 Score=24.32 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=46.1
Q ss_pred eEEEEEcCccHHHH------HHHHHHHC-CCCCCCeeeccCCCCHHHHHHHHHHHH-c-CCCccEEEEEccCCCCChHHH
Q 014588 293 EIGCMVNGAGLAMA------TMDIIKLH-GGTPANFLDVGGNASEGQVVEAFKILT-S-DEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 293 ~vaiitngGG~gv~------~~D~l~~~-G~~~~NPlDl~g~~~~~~~~~al~~ll-~-d~~vd~ilv~i~~~~~~~~~~ 363 (422)
+|++++..-+.... ..+++..+ |++... + ..++.+.+...++++.++ + .|++++|+. ..+.+
T Consensus 138 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~-~-~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~-------~nd~~ 208 (332)
T 2rjo_A 138 GVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLD-F-QVADWNSQKAFPIMQAWMTRFNSKIKGVWA-------ANDDM 208 (332)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEE-E-EECTTCHHHHHHHHHHHHHHHGGGEEEEEE-------SSHHH
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEe-e-ccCCCCHHHHHHHHHHHHHhcCCCeeEEEE-------CCCch
Confidence 89999865332211 23677776 665321 2 345666665555555554 4 678999884 24778
Q ss_pred HHHHHHHHHhcC
Q 014588 364 ASGIVNAAKQVA 375 (422)
Q Consensus 364 a~~i~~~~~~~~ 375 (422)
|.++++++++.+
T Consensus 209 A~g~~~al~~~G 220 (332)
T 2rjo_A 209 ALGAIEALRAEG 220 (332)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 889999988854
No 265
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=23.05 E-value=40 Score=27.94 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=53.6
Q ss_pred CCeEEEEEcC---ccHHHHHHHHHHHCCCCCCCeeeccCC-CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 291 DGEIGCMVNG---AGLAMATMDIIKLHGGTPANFLDVGGN-ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 291 ~g~vaiitng---GG~gv~~~D~l~~~G~~~~NPlDl~g~-~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
..+|+|+..| |-+|-..+..+...|.+. =|++-.++ ....+.+..++-+- ..+|.+++..+ . ..+..
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v-~~Vnp~~~~i~G~~~y~sl~~l~--~~vDlvvi~vp-----~-~~~~~ 92 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDV-YPVNPKYEEVLGRKCYPSVLDIP--DKIEVVDLFVK-----P-KLTME 92 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEE-EEECTTCSEETTEECBSSGGGCS--SCCSEEEECSC-----H-HHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEE-EEECCCCCeECCeeccCCHHHcC--CCCCEEEEEeC-----H-HHHHH
Confidence 3589999887 667778888899888741 11111111 00001111122121 25888776443 2 23333
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCC
Q 014588 367 IVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMT 402 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip 402 (422)
+++.+.+. +.+.++...|....+..+..+++|+.
T Consensus 93 vv~~~~~~--gi~~i~~~~g~~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 93 YVEQAIKK--GAKVVWFQYNTYNREASKKADEAGLI 126 (144)
T ss_dssp HHHHHHHH--TCSEEEECTTCCCHHHHHHHHHTTCE
T ss_pred HHHHHHHc--CCCEEEECCCchHHHHHHHHHHcCCE
Confidence 33333231 34455454454567778888999987
No 266
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=22.87 E-value=3e+02 Score=23.42 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=41.7
Q ss_pred CeEEEEEcCcc---------HHHHHHHHHH---HCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCC
Q 014588 292 GEIGCMVNGAG---------LAMATMDIIK---LHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMK 359 (422)
Q Consensus 292 g~vaiitngGG---------~gv~~~D~l~---~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~ 359 (422)
-+++|||.|-- -+-+.+..+. ..|..+ . ..+.++ +.+.+.++++..+++.++|.|++.-..+.+.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~-~~iv~D-d~~~I~~~l~~~~~~~~~DlVittGG~g~g~ 82 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-E-YRVIPD-ERDLIEKTLIELADEKGCSLILTTGGTGPAP 82 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-E-EEEECS-CHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-E-EEEcCC-CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 37888887643 2345667777 788876 3 334444 4566888888888765789887643333443
No 267
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.82 E-value=3.9e+02 Score=23.50 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=44.7
Q ss_pred CeEEEEEcCccHHHH------HHHHHHHC-CCCCCCeeeccCCCCHHHHHHHHH-HHHcCCCccEEEEEccCCCCChHHH
Q 014588 292 GEIGCMVNGAGLAMA------TMDIIKLH-GGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 292 g~vaiitngGG~gv~------~~D~l~~~-G~~~~NPlDl~g~~~~~~~~~al~-~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
++|++++...+.... ..+++..+ |++... ...++.+.+.-.++++ ++...|++++|+. ..|.+
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nD~~ 194 (283)
T 2ioy_A 124 GNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA--KQAADFDRSKGLSVMENILQAQPKIDAVFA-------QNDEM 194 (283)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--EEECTTCHHHHHHHHHHHHHHCSCCCEEEE-------SSHHH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--eccCCCCHHHHHHHHHHHHHhCCCccEEEE-------CCchH
Confidence 389999854332211 23555554 443211 1245566665444444 4445788999884 24788
Q ss_pred HHHHHHHHHhcCC
Q 014588 364 ASGIVNAAKQVAL 376 (422)
Q Consensus 364 a~~i~~~~~~~~~ 376 (422)
|-++++++++.+.
T Consensus 195 A~g~~~al~~~G~ 207 (283)
T 2ioy_A 195 ALGAIKAIEAANR 207 (283)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999888654
No 268
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=22.73 E-value=2.2e+02 Score=28.83 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE
Q 014588 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv 382 (422)
.+...++.+.+.|+.++-.-=++|. . ..+-+.|+++|.+|.|.. .| +..+.+.|.+...+ +-||+..
T Consensus 189 t~~~l~~l~~eaGlP~gvv~vv~g~--~---~~~g~~L~~~p~vd~I~F--TG----S~~vG~~i~~~aa~--~l~~v~l 255 (506)
T 3rh9_A 189 TMIAFFSVMDKLDLPDGMVNLVMGK--A---SVIGKVLCEHKDVPMLSF--TG----STEVGRKLIVDTAE--QVKKLAL 255 (506)
T ss_dssp HHHHHHHHHTTTTCCTTSEEECCSC--H---HHHHHHHHHCTTCCEEEE--ES----CHHHHHHHHHHTTT--TTCEEEE
T ss_pred HHHHHHHHHHHhCcChhhEEEEeCC--C---hHHHHHHHhCCCCCEEEE--EC----CHHHHHHHHHHhhh--cCCceEE
Confidence 4566677787777764322223342 1 245667888999998873 33 24566666665543 3577766
Q ss_pred EeCCC
Q 014588 383 RLEGT 387 (422)
Q Consensus 383 ~~~g~ 387 (422)
-+||.
T Consensus 256 ElGGk 260 (506)
T 3rh9_A 256 ELGGN 260 (506)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 66664
No 269
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=22.56 E-value=3.1e+02 Score=27.42 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEE
Q 014588 303 LAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382 (422)
Q Consensus 303 ~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv 382 (422)
.+.+.++.+.+.|+.++=.-=+.|+ . .+.+.|+++|++|.|.. .| +..+.+.|.+...+ +.+|++.
T Consensus 181 t~~~l~~l~~~aGlP~gvv~vv~g~--~----~~~~~L~~~~~v~~V~f--TG----S~~~g~~i~~~aa~--~~~~v~~ 246 (490)
T 3ju8_A 181 VAELTLKAWIQAGLPAGVLNLVQGG--R----ETGVALAAHRGLDGLFF--TG----SSRTGNLLHSQFGG--QPQKILA 246 (490)
T ss_dssp HHHHHHHHHHHTTCCTTTEEECCCS--H----HHHHHHHTCTTCSEEEE--ES----CHHHHHHHHHHTTT--CTTSEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEeCC--H----HHHHHHHhCCCcCEEEE--EC----cHHHHHHHHHHhhc--cCCCcEE
Confidence 4566778888988865322223442 2 45678889999999873 33 24556666555443 4678743
Q ss_pred -EeCCC
Q 014588 383 -RLEGT 387 (422)
Q Consensus 383 -~~~g~ 387 (422)
-+||.
T Consensus 247 lElGGk 252 (490)
T 3ju8_A 247 LEMGGN 252 (490)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 36653
No 270
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=22.34 E-value=4e+02 Score=23.39 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCeEEEEEcCc---cHH-HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHH
Q 014588 291 DGEIGCMVNGA---GLA-MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIA 364 (422)
Q Consensus 291 ~g~vaiitngG---G~g-v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a 364 (422)
+++|.+-|..| -.| .+.+..++..|..+ +|++-+.+.+.+.+++.. -+.|.|.+ .... +......
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~V---i~LG~~vp~e~iv~~~~~----~~~d~v~l~~S~l~--~~~~~~~ 162 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQI---VDLGVDVLNENVVEEAAK----HKGEKVLLVGSALM--TTSMLGQ 162 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEE---EECCSSCCHHHHHHHHHH----TTTSCEEEEEECSS--HHHHTHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeE---EEcCCCCCHHHHHHHHHH----cCCCEEEEEchhcc--cCcHHHH
Confidence 45777766554 233 35567888888754 689999998876555533 34577776 3332 2223335
Q ss_pred HHHHHHHHhcCC--CCcEEEEeCCC-CHHHHHHHHHHcCCCcccccCHHHHHHHHHHH
Q 014588 365 SGIVNAAKQVAL--KVPVVVRLEGT-NVDQGKRILKESGMTLITAEDLDDAAEKAVKA 419 (422)
Q Consensus 365 ~~i~~~~~~~~~--~kpivv~~~g~-~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~~ 419 (422)
..+++.+++.+. +.||++ ||. ..++..+ +-|-- ..-.|..+|++.+-++
T Consensus 163 ~~~i~~l~~~~~~~~v~v~v--GG~~~~~~~a~---~iGad-~~~~dA~~av~~a~~l 214 (215)
T 3ezx_A 163 KDLMDRLNEEKLRDSVKCMF--GGAPVSDKWIE---EIGAD-ATAENAAEAAKVALEV 214 (215)
T ss_dssp HHHHHHHHHTTCGGGSEEEE--ESSSCCHHHHH---HHTCC-BCCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCEEEE--ECCCCCHHHHH---HhCCe-EEECCHHHHHHHHHHh
Confidence 566666666433 344443 443 2233222 33654 1345788888766554
No 271
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=22.00 E-value=2.6e+02 Score=22.25 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=54.9
Q ss_pred CCCeEEEEEcCccHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHH-HHHHHH
Q 014588 290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDV-IASGIV 368 (422)
Q Consensus 290 ~~g~vaiitngGG~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~-~a~~i~ 368 (422)
.++++.|+...|.+=..+++.+... ++.+ .++.+.+++.+.. ....|. -...+.
T Consensus 20 ~~~~i~v~~l~G~L~f~~a~~~~~~----------------------l~~~--~~~~~~vvlDls~-v~~iDssgl~~L~ 74 (135)
T 4dgf_A 20 VPLGVEIYEINGPFFFGVADRLKGV----------------------LDVI--EETPKVFILRMRR-VPVIDATGMHALW 74 (135)
T ss_dssp CCTTEEEEECCSSBSHHHHHHHTTG----------------------GGGC--SSCCSEEEEECTT-CSCBCHHHHHHHH
T ss_pred CCCCEEEEEeeceEEehhHHHHHHH----------------------HHHh--cCCCcEEEEEcCC-CCccCHHHHHHHH
Confidence 3457778877777666666666432 1111 1345677765543 222222 223333
Q ss_pred HHHHhcC-CCCcEEEEeCCCCHHHHHHHHHHcCCC-----cccccCHHHHHHHHHHHh
Q 014588 369 NAAKQVA-LKVPVVVRLEGTNVDQGKRILKESGMT-----LITAEDLDDAAEKAVKAI 420 (422)
Q Consensus 369 ~~~~~~~-~~kpivv~~~g~~~~~~~~~L~~~Gip-----~~vf~~~e~Av~al~~~~ 420 (422)
...++.. .+..++++ +. .+..++.|+..|+. .++|++.++|+.++....
T Consensus 75 ~~~~~~~~~g~~l~l~--~~-~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~ 129 (135)
T 4dgf_A 75 EFQESCEKRGTILLLS--GV-SDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLV 129 (135)
T ss_dssp HHHHHHHHHTCEEEEE--SC-CHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEE--cC-CHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHHHH
Confidence 3333211 24555443 22 23455677776641 148999999999876654
No 272
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.97 E-value=2.5e+02 Score=26.07 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=50.2
Q ss_pred eEEEEEcCccHH-------HHHHHHHHHCCCCCCCeeec-cCCCCHHHHHHHH-HHHHcCCCccEEEEEccCCCCChHHH
Q 014588 293 EIGCMVNGAGLA-------MATMDIIKLHGGTPANFLDV-GGNASEGQVVEAF-KILTSDEKVKAILVNIFGGIMKCDVI 363 (422)
Q Consensus 293 ~vaiitngGG~g-------v~~~D~l~~~G~~~~NPlDl-~g~~~~~~~~~al-~~ll~d~~vd~ilv~i~~~~~~~~~~ 363 (422)
+|++++...+.. --..+++..+|+.....+.+ .+..+.+.-.+++ +++.+.|.+++|+. ..|.+
T Consensus 189 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nD~~ 261 (355)
T 3e3m_A 189 KIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFC-------VSDMP 261 (355)
T ss_dssp SEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHH
T ss_pred eEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-------CChHH
Confidence 899998644321 12447888888876533333 3455556544444 44445688999884 24788
Q ss_pred HHHHHHHHHhcCCC
Q 014588 364 ASGIVNAAKQVALK 377 (422)
Q Consensus 364 a~~i~~~~~~~~~~ 377 (422)
|-++++++++.+..
T Consensus 262 A~g~~~al~~~G~~ 275 (355)
T 3e3m_A 262 AFGLLSRLKSIGVA 275 (355)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 88999998886543
No 273
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=21.89 E-value=4e+02 Score=23.26 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=51.1
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHH-HHcCCCccEEEEEccCCCCChHHHH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI-LTSDEKVKAILVNIFGGIMKCDVIA 364 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~-ll~d~~vd~ilv~i~~~~~~~~~~a 364 (422)
++|++++...+... -..+++...|++.. +. ..++.+.+.-.++++. +...|.+++|+. ..|.+|
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~-~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~nD~~A 194 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVL-AS-QPADFDRIKGLNVMQNLLTAHPDVQAVFA-------QNDEMA 194 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEE-EE-EECTTCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEE-Ee-cCCCCCHHHHHHHHHHHHHhCCCccEEEE-------CCCcHH
Confidence 48999975433221 13467777776532 11 2455666654444444 445788999884 247889
Q ss_pred HHHHHHHHhcCCCCcEEEEeCC
Q 014588 365 SGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 365 ~~i~~~~~~~~~~kpivv~~~g 386 (422)
-++++++++.+.+.--++...+
T Consensus 195 ~g~~~al~~~g~~dv~vvGfD~ 216 (271)
T 2dri_A 195 LGALRALQTAGKSDVMVVGFDG 216 (271)
T ss_dssp HHHHHHHHHHTCCSCEEEEEEC
T ss_pred HHHHHHHHHcCCCCcEEEEecC
Confidence 9999998886543323333433
No 274
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=21.86 E-value=52 Score=31.24 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=20.3
Q ss_pred CCeEEEEEc---CccHHHHHHHHHHHCCC
Q 014588 291 DGEIGCMVN---GAGLAMATMDIIKLHGG 316 (422)
Q Consensus 291 ~g~vaiitn---gGG~gv~~~D~l~~~G~ 316 (422)
.|+|.+|.- +||.|+++.=..-..|.
T Consensus 44 ~G~vlvIaGsd~~~GA~ilA~~aal~~Ga 72 (310)
T 2r3b_A 44 FGRVVLIGGNRQYGGAIIMSTEACINSGA 72 (310)
T ss_dssp GCEEEEECCCSSSHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCcHHHHHHHHHHHhCc
Confidence 467888875 58899998877777775
No 275
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=21.86 E-value=3.3e+02 Score=27.56 Aligned_cols=70 Identities=9% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE
Q 014588 307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR 383 (422)
Q Consensus 307 ~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~ 383 (422)
.++.|...|.=|..-++-+--.+++...++++.+..++++|+|++....-. +. ...++.++. .+|||+..
T Consensus 34 ~~~~l~~~~~l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs-~a----~~~i~~l~~--l~~PvL~~ 103 (500)
T 4f2d_A 34 VVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFS-PA----KMWINGLTM--LNKPLLQF 103 (500)
T ss_dssp HHHHHHHHTCCSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCC-CT----HHHHHHHHH--CCSCEEEE
T ss_pred HHHHhccccCCCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCc-cH----HHHHHHHHh--cCCCEEEE
Confidence 345555554434455555555567778899988878899999998543221 11 344444555 47999875
No 276
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=21.61 E-value=2.9e+02 Score=25.87 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCccEEEEEccCCCCC------hHHHHHHHHHHHHhc--------CCCCcEEEEeCCC-CH---HH
Q 014588 330 EGQVVEAFKILTSDEKVKAILVNIFGGIMK------CDVIASGIVNAAKQV--------ALKVPVVVRLEGT-NV---DQ 391 (422)
Q Consensus 330 ~~~~~~al~~ll~d~~vd~ilv~i~~~~~~------~~~~a~~i~~~~~~~--------~~~kpivv~~~g~-~~---~~ 391 (422)
.+.|.++++.+.. .+|+|-+|+....++ .......+++..++. +.++||++.+... .. .+
T Consensus 152 ~~~~~~aa~~~~~--g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~ 229 (336)
T 1f76_A 152 KDDYLICMEKIYA--YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQ 229 (336)
T ss_dssp HHHHHHHHHHHGG--GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHH
Confidence 5678898887753 789999987543321 122333444444332 2378999986544 22 23
Q ss_pred HHHHHHHcCCC
Q 014588 392 GKRILKESGMT 402 (422)
Q Consensus 392 ~~~~L~~~Gip 402 (422)
..+.+.+.|+-
T Consensus 230 ~a~~l~~~Gvd 240 (336)
T 1f76_A 230 VADSLVRHNID 240 (336)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHHHcCCc
Confidence 35678888865
No 277
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.61 E-value=2.6e+02 Score=21.02 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeCCCC---HHHHHHHHHHcCCCccccc--CHHHHHHHHHHH
Q 014588 363 IASGIVNAAKQVALKVPVVVRLEGTN---VDQGKRILKESGMTLITAE--DLDDAAEKAVKA 419 (422)
Q Consensus 363 ~a~~i~~~~~~~~~~kpivv~~~g~~---~~~~~~~L~~~Gip~~vf~--~~e~Av~al~~~ 419 (422)
-.+.|+.-+++ .+||++++..|.. ..+....-++.|+.+.+.. +||+.-+...+.
T Consensus 39 dirdiiksmkd--ngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvref 98 (112)
T 2lnd_A 39 DIRDIIKSMKD--NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHTT--CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHh--cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHH
Confidence 34555555555 6899998876653 2334445566788654543 677766555443
No 278
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=21.50 E-value=1.5e+02 Score=27.70 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=33.1
Q ss_pred eeeccCCCCHHH---HHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 321 FLDVGGNASEGQ---VVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 321 PlDl~g~~~~~~---~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
-+-++|..+.+. +...|..+..++..+.|++ |.+||.. .-...|.+.++. .++||++.+.|
T Consensus 84 II~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV---~ag~aIyd~I~~--~k~pV~t~v~G 149 (277)
T 1tg6_A 84 IVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVV---TAGLAIYDTMQY--ILNPICTWCVG 149 (277)
T ss_dssp EEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHH--SCSCEEEEEEE
T ss_pred EEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCH---HHHHHHHHHHHh--cCCCEEEEEcc
Confidence 344555555544 3344444433333455554 7777743 334667777776 46788765544
No 279
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=21.41 E-value=4e+02 Score=26.75 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEEe
Q 014588 305 MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL 384 (422)
Q Consensus 305 v~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~ 384 (422)
.+.++.+.+.|+.++-.-=+.|+.. .+-+.|+++|.+|.|.. .|+ ..+.+.|.+...+.++.||++.-+
T Consensus 193 ~~l~~ll~~aGlP~gvv~vv~g~~~-----~~g~~L~~~p~vd~I~f--TGS----~~~g~~i~~~aa~~~~l~~v~lEl 261 (508)
T 3r64_A 193 VIPARIFEEAGVPAGVISTVAGAGS-----EIGDHFVTHAVPKLISF--TGS----TPVGRRVGELAINGGPMKTVALEL 261 (508)
T ss_dssp HHHHHHHHTTTCCTTTEEECCCCTT-----TTHHHHHHCSSCSEEEE--ESC----HHHHHHHHHHHHSSSSCCEEEEEC
T ss_pred HHHHHHHHHhCcCcCeEEEEeCCCH-----HHHHHHhhCCCccEEEE--ECC----HHHHHHHHHHhhcccCCCceEeec
Confidence 5667889999986532222334311 34566778999999874 332 455666666554311346666556
Q ss_pred CCC
Q 014588 385 EGT 387 (422)
Q Consensus 385 ~g~ 387 (422)
||.
T Consensus 262 GGk 264 (508)
T 3r64_A 262 GGN 264 (508)
T ss_dssp CCC
T ss_pred CCc
Confidence 663
No 280
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=21.34 E-value=2e+02 Score=21.73 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCccEEEEEccCC-CCChHHHHHHHHHHHHhcC-CCCcEEEEeCCCCHHHHHHHHHHcCCC--ccccc
Q 014588 332 QVVEAFKILTSDEKVKAILVNIFGG-IMKCDVIASGIVNAAKQVA-LKVPVVVRLEGTNVDQGKRILKESGMT--LITAE 407 (422)
Q Consensus 332 ~~~~al~~ll~d~~vd~ilv~i~~~-~~~~~~~a~~i~~~~~~~~-~~kpivv~~~g~~~~~~~~~L~~~Gip--~~vf~ 407 (422)
.+.+.+..+..+++...+++...+- ..++ .-+..+....++.. .+..+.++ +. .+..++.|+..|+. +.+|+
T Consensus 29 ~l~~~l~~~~~~~~~~~vvlDls~v~~iDs-sgl~~L~~~~~~~~~~g~~l~l~--~~-~~~v~~~l~~~gl~~~~~i~~ 104 (116)
T 1th8_B 29 ELREQVTDVLENRAIRHIVLNLGQLTFMDS-SGLGVILGRYKQIKNVGGQMVVC--AV-SPAVKRLFDMSGLFKIIRVEA 104 (116)
T ss_dssp HHHHHHHHHHHSSCCCEEEEEEEEEEEECH-HHHHHHHHHHHHHHHTTCCEEEE--SC-CHHHHHHHHHHTGGGTSEEES
T ss_pred HHHHHHHHHHhcCCCcEEEEECCCCcEEcc-HHHHHHHHHHHHHHHhCCeEEEE--eC-CHHHHHHHHHhCCceeEEEeC
Confidence 3555565555544456676654321 1122 12233333332211 35556543 22 24556677776631 23899
Q ss_pred CHHHHHHHH
Q 014588 408 DLDDAAEKA 416 (422)
Q Consensus 408 ~~e~Av~al 416 (422)
+.++|++++
T Consensus 105 ~~~~Al~~~ 113 (116)
T 1th8_B 105 DEQFALQAL 113 (116)
T ss_dssp SHHHHHHHT
T ss_pred CHHHHHHhc
Confidence 999998765
No 281
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=21.28 E-value=2.8e+02 Score=23.00 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCC-ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHH-HHHHHHHHcCCC
Q 014588 326 GNASEGQVVEAFKILTS-DEKVKAILVNIFGGIM-KCDVIASGIVNAAKQVALKVPVVVRLEGTNVD-QGKRILKESGMT 402 (422)
Q Consensus 326 g~~~~~~~~~al~~ll~-d~~vd~ilv~i~~~~~-~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~-~~~~~L~~~Gip 402 (422)
....++.+..+++.+.+ -|+=..++|.-+++.. ........+.+..+. .+ -+++ .+..... ...+..+..+.+
T Consensus 43 yaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~r~k~~~~~~~~~~~~--aD-~vi~-~~~~~~~~~~~~~~~~~~~~ 118 (163)
T 3mvn_A 43 FAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELATSLQD--AD-SVFI-YQPPTIEWQVSEVLANLAQP 118 (163)
T ss_dssp CCCSHHHHHHHHHHHHHHHTTSCEEEEECCC---------CHHHHHHHTT--CS-EEEE-ECC----CCHHHHHTTCCSC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcchhhHHHHHHHHHHHhc--CC-EEEE-ECCCCcccCHHHHHhhCCCC
Confidence 56677878888887764 2432344443233222 112222344444322 12 2332 2211111 122333344456
Q ss_pred cccccCHHHHHHHHHHHhh
Q 014588 403 LITAEDLDDAAEKAVKAIA 421 (422)
Q Consensus 403 ~~vf~~~e~Av~al~~~~~ 421 (422)
++++++.++|++.+...++
T Consensus 119 ~~~~~d~~eai~~~~~~~~ 137 (163)
T 3mvn_A 119 AISADDVDELVMRIVQQAK 137 (163)
T ss_dssp EEEESSHHHHHHHHHHHCC
T ss_pred eEEECCHHHHHHHHHHhCC
Confidence 6788999999999887654
No 282
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=21.27 E-value=1.6e+02 Score=26.74 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=41.4
Q ss_pred CCCeEEEEEcC-ccHHHHHHHHHHHCCCCC---------------------CCeeeccCCCC-HHHHHHHHHHHHcCCCc
Q 014588 290 LDGEIGCMVNG-AGLAMATMDIIKLHGGTP---------------------ANFLDVGGNAS-EGQVVEAFKILTSDEKV 346 (422)
Q Consensus 290 ~~g~vaiitng-GG~gv~~~D~l~~~G~~~---------------------~NPlDl~g~~~-~~~~~~al~~ll~d~~v 346 (422)
++|++++||.+ +|+|-..+..+...|.++ .+..-+..+.+ .+....+++.+.+...+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i 110 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV 110 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 57888888864 789999999999999631 11122223332 23355566655555789
Q ss_pred cEEEEEcc
Q 014588 347 KAILVNIF 354 (422)
Q Consensus 347 d~ilv~i~ 354 (422)
|.++-|..
T Consensus 111 D~lvnnAg 118 (275)
T 4imr_A 111 DILVINAS 118 (275)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 98776543
No 283
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.25 E-value=2e+02 Score=25.84 Aligned_cols=78 Identities=8% Similarity=0.103 Sum_probs=48.9
Q ss_pred CeEEEEEcCccHHH------HHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHc-C---CCccEEEEEccCCCCChH
Q 014588 292 GEIGCMVNGAGLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-D---EKVKAILVNIFGGIMKCD 361 (422)
Q Consensus 292 g~vaiitngGG~gv------~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~-d---~~vd~ilv~i~~~~~~~~ 361 (422)
.||++++...+... -..+++..+|+.+. -+.++.+.+...++++.+++ . +.+++|+. ..+
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-------~~d 201 (295)
T 3hcw_A 132 DELIFITEKGNFEVSKDRIQGFETVASQFNLDYQ---IIETSNEREVILNYMQNLHTRLKDPNIKQAIIS-------LDA 201 (295)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEE---EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEE-------SSH
T ss_pred ccEEEEcCCccchhHHHHHHHHHHHHHHcCCCee---EEeccCCHHHHHHHHHHHHhhcccCCCCcEEEE-------CCh
Confidence 38999986544321 13367888887543 22345566665555555554 2 37888874 247
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 014588 362 VIASGIVNAAKQVALKVP 379 (422)
Q Consensus 362 ~~a~~i~~~~~~~~~~kp 379 (422)
.+|.++++++++.+...|
T Consensus 202 ~~A~g~~~al~~~g~~vP 219 (295)
T 3hcw_A 202 MLHLAILSVLYELNIEIP 219 (295)
T ss_dssp HHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 789999999988664433
No 284
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=21.24 E-value=1.7e+02 Score=26.01 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q 014588 332 QVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386 (422)
Q Consensus 332 ~~~~al~~ll~d~~vd~ilv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~~~g 386 (422)
.+...|..+..++. +.|++ |.+||.. .-+..|.+.++. .++|+++.+.|
T Consensus 55 ~i~~~L~~l~~~~~-k~I~l~INSPGGsv---~a~~~I~~~i~~--~~~pV~t~v~g 105 (215)
T 2f6i_A 55 ELISQLLYLDNINH-NDIKIYINSPGGSI---NEGLAILDIFNY--IKSDIQTISFG 105 (215)
T ss_dssp HHHHHHHHHHHHCC-SCEEEEEEECCBCH---HHHHHHHHHHHH--SSSCEEEEEEE
T ss_pred HHHHHHHHHHhCCC-CcEEEEEECCCCCH---HHHHHHHHHHHh--cCCCEEEEEee
Confidence 45555555544433 55554 6777643 334667777766 35677765434
No 285
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=21.17 E-value=1.5e+02 Score=24.19 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=52.3
Q ss_pred CCeEEEEEcC---ccHHHHHHHHHHHCCCCCCCeeeccCCCC-HHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q 014588 291 DGEIGCMVNG---AGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASG 366 (422)
Q Consensus 291 ~g~vaiitng---GG~gv~~~D~l~~~G~~~~NPlDl~g~~~-~~~~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~ 366 (422)
..+|++|..| |-+|-..+..+...|.+. -|+|-.+... ..+.+..++-+. ..+|.+++..+ +..+..
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V-~~vnp~~~~i~G~~~~~s~~el~--~~vDlvii~vp------~~~v~~ 84 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEV-LPVNPNYDEIEGLKCYRSVRELP--KDVDVIVFVVP------PKVGLQ 84 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEE-EEECTTCSEETTEECBSSGGGSC--TTCCEEEECSC------HHHHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEE-EEeCCCCCeECCeeecCCHHHhC--CCCCEEEEEeC------HHHHHH
Confidence 3479999876 667778888888888741 1122111100 001111122221 25788776444 122233
Q ss_pred HHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHcCCC
Q 014588 367 IVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMT 402 (422)
Q Consensus 367 i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~~Gip 402 (422)
+++.+.+ .+.+.++...+....+..+..++.|+.
T Consensus 85 v~~~~~~--~g~~~i~~~~~~~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 85 VAKEAVE--AGFKKLWFQPGAESEEIRRFLEKAGVE 118 (138)
T ss_dssp HHHHHHH--TTCCEEEECTTSCCHHHHHHHHHHTCE
T ss_pred HHHHHHH--cCCCEEEEcCccHHHHHHHHHHHCCCE
Confidence 3332223 234444444444567777888888987
No 286
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=21.00 E-value=1.7e+02 Score=22.29 Aligned_cols=84 Identities=8% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCccEEEEEccCC-CCChHHHHHHHHHHHHhcC-CCCcEEEEeCCCCHHHHHHHHHHcCCC-cccccCH
Q 014588 333 VVEAFKILTSDEKVKAILVNIFGG-IMKCDVIASGIVNAAKQVA-LKVPVVVRLEGTNVDQGKRILKESGMT-LITAEDL 409 (422)
Q Consensus 333 ~~~al~~ll~d~~vd~ilv~i~~~-~~~~~~~a~~i~~~~~~~~-~~kpivv~~~g~~~~~~~~~L~~~Gip-~~vf~~~ 409 (422)
+.+.+..+..+++.+.+++...+- ..++. -+..+....++.. .+..+.++ +. .+..++.|+..|+. +++|++.
T Consensus 29 l~~~l~~~~~~~~~~~vvlDls~v~~iDss-gl~~L~~~~~~~~~~g~~l~l~--~~-~~~v~~~l~~~gl~~~~i~~~~ 104 (117)
T 1h4x_A 29 IRAKISTAIFQGAVTTIIWNFERLSFMDSS-GVGLVLGRMRELEAVAGRTILL--NP-SPTMRKVFQFSGLGPWMMDATE 104 (117)
T ss_dssp HHHHHHHHHHHTSCSEEEEEEEEEEEECTH-HHHHHHHHHHHHHTTTCEEEEE--SC-CHHHHHHHHHTTCGGGEECSCH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCcEechH-HHHHHHHHHHHHHHcCCEEEEE--eC-CHHHHHHHHHhCCceEEEeCCH
Confidence 555565555434456666644321 11221 2233344333221 34555433 22 24567788888862 2278999
Q ss_pred HHHHHHHHHHh
Q 014588 410 DDAAEKAVKAI 420 (422)
Q Consensus 410 e~Av~al~~~~ 420 (422)
++|+.++...+
T Consensus 105 ~~Al~~~~~~~ 115 (117)
T 1h4x_A 105 EEAIDRVRGIV 115 (117)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHHhh
Confidence 99998765543
No 287
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=20.89 E-value=72 Score=24.20 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=18.3
Q ss_pred CCcEEEEeCCC-CHHHHHHHHHHcCCCcccccCHH
Q 014588 377 KVPVVVRLEGT-NVDQGKRILKESGMTLITAEDLD 410 (422)
Q Consensus 377 ~kpivv~~~g~-~~~~~~~~L~~~Gip~~vf~~~e 410 (422)
+-|+|+.-|-+ -....+++-+++||| +++++.
T Consensus 16 ~aP~VvAKG~~~~A~~I~~~A~e~~VP--i~e~~~ 48 (83)
T 3bzy_B 16 PLPLVIETGKDAKALQIIKLAELYDIP--VIEDIP 48 (83)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHHTTCC--EEECHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcCCC--EEeCHH
Confidence 45666554332 344455566667777 666664
No 288
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=20.76 E-value=2e+02 Score=26.10 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=43.6
Q ss_pred ceecCCCeEEEEEcC-ccHHHHHHHHHHHCCCCC-----------CCeeeccCCCC-HHHHHHHHHHHHc-CCCccEEEE
Q 014588 286 NYIGLDGEIGCMVNG-AGLAMATMDIIKLHGGTP-----------ANFLDVGGNAS-EGQVVEAFKILTS-DEKVKAILV 351 (422)
Q Consensus 286 ~~~~~~g~vaiitng-GG~gv~~~D~l~~~G~~~-----------~NPlDl~g~~~-~~~~~~al~~ll~-d~~vd~ilv 351 (422)
.+..++|++++||-+ +|.|-.++-.+.+.|.++ ..-+=+..+.+ .+....+++.+.+ -..+|.++-
T Consensus 5 dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVn 84 (261)
T 4h15_A 5 EFLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVH 84 (261)
T ss_dssp CCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEE
T ss_pred hccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 345689999999864 589999999999999732 11111223333 3446666666554 367897765
Q ss_pred Ec
Q 014588 352 NI 353 (422)
Q Consensus 352 ~i 353 (422)
|.
T Consensus 85 nA 86 (261)
T 4h15_A 85 ML 86 (261)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 289
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=20.57 E-value=2.3e+02 Score=23.98 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=41.4
Q ss_pred eEEEEEcCc-------cHHHHHHHHHHHCCCCCCCeeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC
Q 014588 293 EIGCMVNGA-------GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM 358 (422)
Q Consensus 293 ~vaiitngG-------G~gv~~~D~l~~~G~~~~NPlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~ 358 (422)
+++|||.|= .-+-+.+..+...|..+.. ..+.++ +.+.+.++++..+++.++|.|++.-..+.+
T Consensus 12 ~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~-~~iv~D-d~~~i~~~l~~a~~~~~~DlVittGG~g~~ 82 (172)
T 1mkz_A 12 RIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVD-KAIVKE-NRYAIRAQVSAWIASDDVQVVLITGGTGLT 82 (172)
T ss_dssp EEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEE-EEEECS-CHHHHHHHHHHHHHSSSCCEEEEESCCSSS
T ss_pred EEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeE-EEEeCC-CHHHHHHHHHHHHhcCCCCEEEeCCCCCCC
Confidence 788888763 2346677889998875432 222333 356688899888876678988764333333
No 290
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=20.43 E-value=61 Score=30.76 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=20.6
Q ss_pred CCeEEEEEc---CccHHHHHHHHHHHCCC
Q 014588 291 DGEIGCMVN---GAGLAMATMDIIKLHGG 316 (422)
Q Consensus 291 ~g~vaiitn---gGG~gv~~~D~l~~~G~ 316 (422)
.|+|.+|.- +||.++++.=..-..|.
T Consensus 58 ~G~vlvIaGsd~~~GAgilA~~aal~~Ga 86 (311)
T 3bgk_A 58 FGRVLLIGGNYPYGGAIIMAALACVNSGA 86 (311)
T ss_dssp TCEEEEECCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhCc
Confidence 468888875 68899998877777775
No 291
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=20.20 E-value=1.8e+02 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=33.5
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHcCCC
Q 014588 337 FKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR-LEGTNVDQGKR---ILKESGMT 402 (422)
Q Consensus 337 l~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~~kpivv~-~~g~~~~~~~~---~L~~~Gip 402 (422)
++-+++|+++|+|++..+.. .-++-+..+++ .+|+|++= ....+.+++.+ ..+++|+.
T Consensus 58 ~~~ll~~~~vD~V~i~tp~~-----~H~~~~~~al~---~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~ 119 (334)
T 3ohs_X 58 YEELAKDPNVEVAYVGTQHP-----QHKAAVMLCLA---AGKAVLCEKPMGVNAAEVREMVTEARSRGLF 119 (334)
T ss_dssp HHHHHHCTTCCEEEECCCGG-----GHHHHHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCCCEEEECCCcH-----HHHHHHHHHHh---cCCEEEEECCCCCCHHHHHHHHHHHHHhCCE
Confidence 56778899999999754422 22333334444 36787764 33334445444 45567876
No 292
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=20.15 E-value=5.1e+02 Score=23.81 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=57.6
Q ss_pred eeeccCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC--ChHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHH
Q 014588 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIM--KCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKE 398 (422)
Q Consensus 321 PlDl~g~~~~~~~~~al~~ll~d~~vd~ilv~i~~~~~--~~~~~a~~i~~~~~~~~~~kpivv~~~g~~~~~~~~~L~~ 398 (422)
|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|-. -+.+--..+++...+.. .. |++..++++..++.+..+.
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~-~g-viaGvg~~~t~~ai~la~~ 86 (293)
T 1w3i_A 10 PFTKDNRIDKEKLKIHAENLIR-KGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVT-NK-IIFQVGGLNLDDAIRLAKL 86 (293)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTC-SC-EEEECCCSCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHc-CC-EEEecCCCCHHHHHHHHHH
Confidence 4554578888889999999887 589999974333221 22222344555554422 22 6666777667776664443
Q ss_pred ---cC-------CCcccc-cCHHHHHHHHHHHhh
Q 014588 399 ---SG-------MTLITA-EDLDDAAEKAVKAIA 421 (422)
Q Consensus 399 ---~G-------ip~~vf-~~~e~Av~al~~~~~ 421 (422)
.| -|++.- .+.+..++.+..++.
T Consensus 87 A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 120 (293)
T 1w3i_A 87 SKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCE 120 (293)
T ss_dssp GGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHh
Confidence 45 252222 466666666655553
No 293
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.10 E-value=4.5e+02 Score=23.22 Aligned_cols=64 Identities=22% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHHHCCCCCCCeeec-cCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHhcCC
Q 014588 308 MDIIKLHGGTPANFLDV-GGNASEGQ-VVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 376 (422)
Q Consensus 308 ~D~l~~~G~~~~NPlDl-~g~~~~~~-~~~al~~ll~d~~vd~ilv~i~~~~~~~~~~a~~i~~~~~~~~~ 376 (422)
.+++..+|.+..+.+.. .++.+.+. +..+.+.+.+.|+++++++... .|.+|-++++++++.+.
T Consensus 156 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~-----nD~~A~g~~~al~~~g~ 221 (306)
T 8abp_A 156 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM-----NDSTVLGGVRATEGQGF 221 (306)
T ss_dssp HHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECS-----SHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCcEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeC-----CcHHHHHHHHHHHHcCC
Confidence 46777777643333332 45566665 4455555556799999443222 47889999999988643
No 294
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=20.06 E-value=1.9e+02 Score=26.10 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEeCCC-----CHHHHHHHHHHcCCCcccccCHHHHHHHHHH
Q 014588 360 CDVIASGIVNAAKQVALKVPVVVRLEGT-----NVDQGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
Q Consensus 360 ~~~~a~~i~~~~~~~~~~kpivv~~~g~-----~~~~~~~~L~~~Gip~~vf~~~e~Av~al~~ 418 (422)
.+++++.|.+.+++ ++.|++...|+ ...+-.+.+.+.|+++++.+.+..+..+++.
T Consensus 63 ~~~~~~~i~~~~~~---g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~ 123 (253)
T 4e16_A 63 LQEIIDVMREGIEN---NKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASS 123 (253)
T ss_dssp HHHHHHHHHHHHHT---TCCEEEEESBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCcEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Confidence 34455555554443 44555443443 1223344555666766666665555444443
Done!