RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014588
(422 letters)
>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta;
Provisional.
Length = 422
Score = 808 bits (2088), Expect = 0.0
Identities = 368/422 (87%), Positives = 399/422 (94%)
Query: 1 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60
M+RGLLNKL SRSL+VAG+WQ QQLRRLNIHEYQGAELM+KYG+NVPKG A +S+DEVKK
Sbjct: 1 MLRGLLNKLASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKK 60
Query: 61 AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQ 120
A++ FPD E+VVKSQILAGGRGLGTFK+GLKGGVHIVKK++ E+LAGKMLGQILVTKQ
Sbjct: 61 ALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKKDKAEELAGKMLGQILVTKQ 120
Query: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180
TGP GK V+KVYLCEK+SLVNEMYFAI+LDR +AGP+II CSKGGTSIEDLAEK+P I+
Sbjct: 121 TGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKII 180
Query: 181 KVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 240
KVPID+F GITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFC+ DCT++EINPLAET+
Sbjct: 181 KVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETA 240
Query: 241 GKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNG 300
QLVAADAKLNFDDNAAFRQKEIFALRD +QEDPREVAAAKADLNYIGLDGEIGCMVNG
Sbjct: 241 DGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNG 300
Query: 301 AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360
AGLAMATMDIIKLHGG+PANFLDVGGNASE QVVEAFKILTSD+KVKAILVNIFGGIMKC
Sbjct: 301 AGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKC 360
Query: 361 DVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
DVIASGIVNAAKQV LKVP+VVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKA+
Sbjct: 361 DVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAL 420
Query: 421 AS 422
A
Sbjct: 421 AI 422
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional.
Length = 388
Score = 526 bits (1357), Expect = 0.0
Identities = 202/399 (50%), Positives = 261/399 (65%), Gaps = 20/399 (5%)
Query: 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKEL-----VVKSQILAGGR 83
N+HEYQ EL AKYG+ VP+G+ + +E +A +EL VVK+Q+ AGGR
Sbjct: 2 NLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAA-------EELGGGVWVVKAQVHAGGR 54
Query: 84 GLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142
G GGV + K EE + A ++LG LVT QTGP+G+ V+KV + E + E
Sbjct: 55 GKA-------GGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKE 107
Query: 143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 202
Y +I+LDR T + + ++GG IE++AE+ P I KV ID G+ A ++ L
Sbjct: 108 YYLSIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLTGLQPFQAREIAFKL 167
Query: 203 APKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 262
+ + LYK F E D +L+EINPL T L+A DAK+NFDDNA FR
Sbjct: 168 GLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHP 227
Query: 263 EIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFL 322
++ LRD ++EDP E A+K LNY+ LDG IGCMVNGAGLAMATMDIIKL+GG PANFL
Sbjct: 228 DLAELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPANFL 287
Query: 323 DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382
DVGG A+ +V EAFKI+ SD VKAILVNIFGGI +CDVIA GI+ A K+V + VP+VV
Sbjct: 288 DVGGGATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVV 347
Query: 383 RLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421
RLEGTNV+ GK+IL ESG+ +I A+ LDDAA+KAV+A
Sbjct: 348 RLEGTNVELGKKILAESGLNIIAADTLDDAAQKAVEAAK 386
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 464 bits (1197), Expect = e-163
Identities = 196/400 (49%), Positives = 266/400 (66%), Gaps = 19/400 (4%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+HEYQ EL AKYGI VP G S +E ++A ++ +VVK+Q+ AGGRG
Sbjct: 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKEL--GGGPVVVKAQVHAGGRGKA- 57
Query: 88 FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYF 145
GGV + K EE ++ A ++LG+ QT +G+ V+KV + E + + E Y
Sbjct: 58 ------GGVKLAKSPEEAKEAAEEILGK---NYQTDIKGEPVNKVLVEEAVDIIKKEYYL 108
Query: 146 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLA 203
+I+LDR + P+++ ++GG IE++AEK P IVKV +D G+ A ++ GL
Sbjct: 109 SIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQARELAFKLGLE 168
Query: 204 PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS-GKQLVAADAKLNFDDNAAFRQK 262
++ + +KKLYKLF E D TL+EINPL T G ++A DAK+ DDNA FR
Sbjct: 169 GELV--KQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHP 226
Query: 263 EIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFL 322
++ LRD ++EDPRE A+ LNY+ LDG IGC+VNGAGLAMATMDI+KL+GG PANFL
Sbjct: 227 DLAELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFL 286
Query: 323 DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVV 382
DVGG A+ +V EAFK++ SD VKAI VNIFGGI +CD +A GI+ A K+V + VP+VV
Sbjct: 287 DVGGGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVV 346
Query: 383 RLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIAS 422
RLEGTNV++GKRIL ESG+ +I A+DLD+AAEKAV+
Sbjct: 347 RLEGTNVEEGKRILAESGLNIIAADDLDEAAEKAVELAKG 386
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This
model is designated subfamily because it does not
discriminate the ADP-forming enzyme ((EC 6.2.1.5) from
the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half
is described by the CoA-ligases model (pfam00549). The
C-terminal half is described by the ATP-grasp model
(pfam02222). This family contains a split seen both in a
maximum parsimony tree (which ignores gaps) and in the
gap pattern near position 85 of the seed alignment.
Eukaryotic and most bacterial sequences are longer and
contain a region similar to TXQTXXXG. Sequences from
Deinococcus radiodurans, Mycobacterium tuberculosis,
Streptomyces coelicolor, and the Archaea are 6 amino
acids shorter in that region and contain a motif
resembling [KR]G [Energy metabolism, TCA cycle].
Length = 386
Score = 429 bits (1106), Expect = e-150
Identities = 195/396 (49%), Positives = 264/396 (66%), Gaps = 14/396 (3%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+HEYQ ++ AKYGI VP+G SV+E ++ +VVK+Q+ AGGRG
Sbjct: 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKL--GAGPVVVKAQVHAGGRGKA- 57
Query: 88 FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
GGV + K KEE A K+LG+ LVT QT P G+ V+K+ + E + E Y +
Sbjct: 58 ------GGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLS 111
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAP 204
I++DR P+I+ ++GG IE++AEK P I+K ID G+ A ++ GL
Sbjct: 112 IVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAKKLGLEG 171
Query: 205 KVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI 264
++ + I +KKLY++F E D +L+EINPL T L+A DAKL DDNA FR ++
Sbjct: 172 ELVKQVADI--IKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDL 229
Query: 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDV 324
+RD +QEDPREV A + LNY+ LDG IGCMVNGAGLAMATMDIIKL+GG PANFLDV
Sbjct: 230 EEMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDV 289
Query: 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL 384
GG AS +V EA K++ SD+ VK + +NIFGGI +CD++A G+V A K+V + VPVVVRL
Sbjct: 290 GGGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRL 349
Query: 385 EGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
EGTNV++GK+IL ESG+ +I A +++AAEKAV+A
Sbjct: 350 EGTNVEEGKKILAESGLNIIFATSMEEAAEKAVEAA 385
>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional.
Length = 392
Score = 408 bits (1051), Expect = e-141
Identities = 185/393 (47%), Positives = 264/393 (67%), Gaps = 10/393 (2%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
++IHEYQ EL+A +G+ VP+G S ++ ++ H VVK+QI +G RG
Sbjct: 1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWH--WVVKAQIHSGARGKA- 57
Query: 88 FKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
GG+ + + EV D A +LG+ LVT QTGP+GK V +VY+ + E+Y
Sbjct: 58 ------GGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLG 111
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
+LDRK+ +I ++GG IE++A K P I++V ++ G+ A ++ GL +
Sbjct: 112 FVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVGLQQFQAREIAFGLGLDI 171
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
+ A++ + Y+ F + D T+LEINPL T +++A DAK++FDDNA FR+ I
Sbjct: 172 KQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIAE 231
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
+RDP+QEDPRE AA+ L+Y+GLDG+IGC+VNGAGLAMATMD+IKL GG PANFLDVGG
Sbjct: 232 MRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGG 291
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386
AS +V +AF+++ SD VKAILVNIF GI +CD +A G+V AA++V + VP+VVRL G
Sbjct: 292 GASPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAG 351
Query: 387 TNVDQGKRILKESGMTLITAEDLDDAAEKAVKA 419
TNV++G++IL ESG+ +ITA+ L +AAEKAV+A
Sbjct: 352 TNVEEGRKILAESGLPIITADTLAEAAEKAVEA 384
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain.
Length = 202
Score = 207 bits (530), Expect = 1e-65
Identities = 97/213 (45%), Positives = 135/213 (63%), Gaps = 14/213 (6%)
Query: 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTF 88
N+HEYQ EL+AKYG+ VP+G S +E ++A + K VVK+Q+LAGGRG
Sbjct: 1 NLHEYQAKELLAKYGVPVPRGEVAFSPEEAEEAAKKL--GGKVWVVKAQVLAGGRGKA-- 56
Query: 89 KSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147
GGV + K EE ++ A +MLG+ LVTKQTGP+GK V+KV + E + + E Y +I
Sbjct: 57 -----GGVKLAKSPEEAKEAAKEMLGKNLVTKQTGPEGKPVNKVLVEEAVDIAREYYLSI 111
Query: 148 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPK 205
+LDR + GP++I ++GG IE++A K P I KVPID G+T A ++ GL +
Sbjct: 112 VLDRASRGPVLIASTEGGVDIEEVAAKNPEAIHKVPIDPATGLTPYQAREIAFKLGLEGE 171
Query: 206 VADRNDAIEQVKKLYKLFCESDCTLLEINPLAE 238
+ + A + +KKLYKLF E D TL+EINPL E
Sbjct: 172 LVKQ--AADIIKKLYKLFVERDATLVEINPLVE 202
>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase. This family includes the CoA
ligases Succinyl-CoA synthetase alpha and beta chains,
malate CoA ligase and ATP-citrate lyase. Some members of
the family utilise ATP others use GTP.
Length = 128
Score = 130 bits (329), Expect = 8e-37
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 7/128 (5%)
Query: 297 MVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVV-EAFKILTSDEKVKAILVNIFG 355
+VNG LAM MD+IKL GG P NF+D+GG+A +A K+ +D +VK IL++I
Sbjct: 1 LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60
Query: 356 GIMKCDVIASGIVNAAKQV-ALKVPVVVRLEGTNVD-----QGKRILKESGMTLITAEDL 409
G C+ A G++ A K+ A ++PVV R+ GT D + + L ESG+ + ++ +
Sbjct: 61 GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGREEQAKALAESGVLIASSNNQ 120
Query: 410 DDAAEKAV 417
A AV
Sbjct: 121 ALRAAGAV 128
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase.
Length = 423
Score = 50.9 bits (122), Expect = 6e-07
Identities = 105/441 (23%), Positives = 181/441 (41%), Gaps = 83/441 (18%)
Query: 27 RLNIHEYQGAELMAKY-----GINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQIL 79
R I EY L+ ++ GI++P A S D + A ++ + +LVVK +L
Sbjct: 3 RKKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDML 62
Query: 80 AGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLG-QILVTKQTGPQGKIVSKVYLCEKLS 138
G RG KSGL + +V + LG ++ + GP + + ++
Sbjct: 63 FGKRG----KSGLVA--LNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHD-- 114
Query: 139 LVNEMYFAIMLDRKTAGPIIIGCS-----KGGTSIEDLAEKYPNMIVKVPIDVFNGITDE 193
E Y +I+ DR +GCS GG IE+ +K + + +T E
Sbjct: 115 --QEFYLSIVSDR-------LGCSISFSECGGIEIEENWDKVKTIFLPTE----APLTSE 161
Query: 194 DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNF 253
A ++ L ++ R E +K ++ +F + D T LE+NP G+ D +
Sbjct: 162 ICAPLIATLPLEI--RGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPY-PLDMRGEL 218
Query: 254 DDNAAFRQKEIFA----------LRDPTQEDPREV-AAAKADLNYIGLD--GEIGCMVNG 300
DD AAF+ + + + PT+ + A L + L+ G I MV G
Sbjct: 219 DDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAG 278
Query: 301 AGLAMATMDIIKLHGGTP--ANFLDVGGNASEGQVVEAFKIL------TSDEKVKAILVN 352
G ++ D + G N+ + G +E +V++ +++ D + +A+L
Sbjct: 279 GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALL-- 336
Query: 353 IFGGIMK-CDVIA--SGIVNA-----AKQVALKVPVVVRLEGTNVDQGKRILK------- 397
I GGI DV A +GI+ A +K A ++ + VR G N +G ++
Sbjct: 337 IGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIG 396
Query: 398 --------ESGMTLITAEDLD 410
E+ MT I + +D
Sbjct: 397 VPIEVYGPEATMTGICKQAID 417
>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP
forming), alpha domain. Although technically
reversible, it is believed that this group of
ADP-dependent acetyl-CoA synthetases (ACS) act in the
direction of acetate and ATP production in the organisms
in which it has been characterized. In most species this
protein exists as a fused alpha-beta domain polypeptide.
In Pyrococcus and related species, however the domains
exist as separate polypeptides. This model represents
the alpha (N-terminal) domain. In Pyrococcus and related
species there appears to have been the development of a
paralogous family such that four other proteins are
close relatives. In reference , one of these (along with
its beta-domain partner) was characterized as ACS-II
showing specificity for phenylacetyl-CoA. This model has
been constructed to exclude these non-ACS-I paralogs.
This may result in new, authentic ACS-I sequences
falling below the trusted cutoff.
Length = 447
Score = 44.2 bits (105), Expect = 8e-05
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 301 AGLAMATMDIIKLH---GGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNI-FGG 356
A L+ AT + ++ + N +DV G+A+ + +A K + DE V ++V +
Sbjct: 323 AELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTA 382
Query: 357 IMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKA 416
+ + +A GI+ AK+ K V + G +VD KRIL+E+G+ T E+A
Sbjct: 383 MTDPEEVAKGIIEGAKKSNEKPVVAGFMGGKSVDPAKRILEENGIPNYT------FPERA 436
Query: 417 VKAIA 421
VKA++
Sbjct: 437 VKALS 441
>gnl|CDD|216282 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp
(A) domain. Phosphoribosylglycinamide synthetase
catalyzes the second step in the de novo biosynthesis of
purine. The reaction catalyzed by
Phosphoribosylglycinamide synthetase is the ATP-
dependent addition of 5-phosphoribosylamine to glycine
to form 5'phosphoribosylglycinamide. This domain is
related to the ATP-grasp domain of biotin
carboxylase/carbamoyl phosphate synthetase (see
pfam02786).
Length = 193
Score = 35.7 bits (83), Expect = 0.021
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGV 96
+ M ++GI + +E K I++A VVK+ LA G+ GV
Sbjct: 8 DFMKRHGIPTAEYETFTDPEEAKSYIREAGF---PAVVKADGLAAGK-----------GV 53
Query: 97 HIVKKEEVEDLAGKMLGQILVTKQTGPQGKIV 128
+ E A K + +IL K+ G G+ V
Sbjct: 54 IVAMDNEE---AIKAVDEILEQKKFGEAGEPV 82
>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy
production and conversion].
Length = 598
Score = 36.6 bits (85), Expect = 0.028
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIASGIVNAAKQVAL 376
N +D+ G+A + + +IL DE V A+LV + + A I+ A +
Sbjct: 347 VKNPVDLTGDADAERYKKTLEILLRDENVDALLVIVLPPASADPEETAEAIIRATAKKRG 406
Query: 377 KVPVVVRLEGTNVDQGKRILKESGM-TLITAEDLDDAAEKAVK 418
K VV + G + ++ +R+L+E+G+ T T E A +
Sbjct: 407 KPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVKALSALAR 449
Score = 28.5 bits (64), Expect = 8.6
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA-----IQDAFPDHK 70
+ E + EL+ YGI VP +A + V A ++ DHK
Sbjct: 466 GGGTTLDEPEAKELLEAYGIPVPATIASTLDEAVHIAESIGKLRSPDIDHK 516
>gnl|CDD|233164 TIGR00877, purD, phosphoribosylamine--glycine ligase. Alternate
name: glycinamide ribonucleotide synthetase (GARS). This
enzyme appears as a monofunctional protein in
prokaryotes but as part of a larger, multidomain protein
in eukaryotes [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 422
Score = 34.2 bits (79), Expect = 0.12
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 17/97 (17%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGV 96
+ M +YGI + +E K IQ+ +VVK+ LA G+ GV
Sbjct: 110 DFMKRYGIPTAEYEVFTDPEEAKSYIQEKGA---PIVVKADGLAAGK-----------GV 155
Query: 97 HIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYL 133
+ K E A K + IL K ++V + +L
Sbjct: 156 IVAKTNEE---AIKAVEDILEQKFGDAGERVVIEEFL 189
>gnl|CDD|217645 pfam03629, DUF303, Domain of unknown function (DUF303).
Distribution of this domain seems limited to prokaryotes
and viruses.
Length = 257
Score = 33.1 bits (76), Expect = 0.19
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 142 EMYFAIMLDRKTAGPI-IIGCSKGGTSIED 170
+FA L ++ PI +I C+ GGT IE
Sbjct: 70 GYFFARKLQQELNVPIGLIPCAWGGTPIEA 99
>gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 31.8 bits (73), Expect = 0.71
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRG 84
+ M KYGI + +E K I + +VVK+ LA G+G
Sbjct: 109 DFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAP---IVVKADGLAAGKG 153
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 32.0 bits (74), Expect = 0.80
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFKSGLKGG 95
E M K G+ VP+ S++E + ++ +P ++++ GG G GG
Sbjct: 134 EAMKKIGLPVPRSGIAHSMEEALEVAEEIGYP----VIIRPSFTLGGTG---------GG 180
Query: 96 VHIVKKEEVEDLAGKML-----GQILVTK 119
+ +EE+E++ + L ++L+ +
Sbjct: 181 I-AYNEEELEEIVERGLDLSPVTEVLIEE 208
>gnl|CDD|222215 pfam13549, ATP-grasp_5, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 222
Score = 30.1 bits (69), Expect = 1.9
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA 61
R + E + L+A YGI V S +E A
Sbjct: 6 GRTVLTEPEAKALLAAYGIPVVPTRLARSPEEAVAA 41
>gnl|CDD|236454 PRK09288, purT, phosphoribosylglycinamide formyltransferase 2;
Validated.
Length = 395
Score = 29.7 bits (68), Expect = 3.0
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 375 ALKVP-VVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421
AL VP VRL G +G R + G+ L T ED+++A EKA +A +
Sbjct: 344 ALAVPGTDVRLFGKPEIRGGRRM---GVALATGEDVEEAREKAKEAAS 388
>gnl|CDD|223106 COG0027, PurT, Formate-dependent phosphoribosylglycinamide
formyltransferase (GAR transformylase) [Nucleotide
transport and metabolism].
Length = 394
Score = 29.6 bits (67), Expect = 3.1
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 375 ALKVP-VVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKA 419
AL VP VRL G G R L G+ L TAE +++A E+A KA
Sbjct: 344 ALGVPDTQVRLFGKPEADGGRRL---GVALATAESVEEARERARKA 386
>gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein;
Provisional.
Length = 326
Score = 29.5 bits (67), Expect = 3.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 33 YQGAELMAKYGINVPKGLAVASVDEVKKAI---QDAFPDHKELVVKSQILAGGRGLGTFK 89
+ E + + GI PK S+++ K A+ + FP L VK + G +G FK
Sbjct: 113 WLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQFP----LFVKPRD--GSASIGVFK 166
Query: 90 SGLKGGVHIVKKEEVEDLAGKMLGQIL 116
+ KEE+E L + I+
Sbjct: 167 --------VNDKEELEFLLEYVPNLII 185
>gnl|CDD|221924 pfam13103, TonB_2, TonB C terminal. This family contains TonB
members that are not captured by pfam03544.
Length = 83
Score = 27.7 bits (62), Expect = 3.6
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 376 LKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
L+ V + ++ RILK SG E D+A ++A++
Sbjct: 25 LEAVVRITIDPDGTIVSVRILKSSGN-----EAFDEAVKRALERA 64
>gnl|CDD|221251 pfam11832, DUF3352, Protein of unknown function (DUF3352). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 538 to 575
amino acids in length.
Length = 541
Score = 29.7 bits (67), Expect = 3.8
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 20 WQQQQLRRLNIH--EYQGAELMAKYGINVPKGLAVASVDE 57
WQ + L ++ YQG +++ G + + LA A +D+
Sbjct: 144 WQTRSLAGTDLQISTYQGIGIISGQGALLGRPLATALLDD 183
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 28.4 bits (64), Expect = 4.6
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRG 84
EL+ G+ VP V +++ A ++ FP +V+K + AG G
Sbjct: 10 ELLRAAGLPVPPFFLVDDEEDLDAAAEEIGFP----VVLKPRDGAGSLG 54
>gnl|CDD|240805 cd12359, RRM2_VICKZ, RNA recognition motif 2 in the VICKZ family
proteins. This subfamily corresponds to the RRM2 of
IGF-II mRNA-binding proteins (IGF2BPs or IMPs) in the
VICKZ family that have been implicated in the
post-transcriptional regulation of several different
RNAs and in subcytoplasmic localization of mRNAs during
embryogenesis. IGF2BPs are composed of two RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains),
and four hnRNP K homology (KH) domains. .
Length = 76
Score = 26.9 bits (60), Expect = 5.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 22 QQQLRRLNIHEYQGAELMAKY 42
QQ + +LN HEY+G++L Y
Sbjct: 53 QQAVNKLNGHEYEGSKLKVSY 73
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 28.2 bits (63), Expect = 6.0
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 32/148 (21%)
Query: 148 MLDRKTAGPII-IGCSKGGTSIEDLAEKYPNMIVKV-----PIDVFNGITDEDAAKVVDG 201
+LD GP++ +G S GG A + P + + P+ + DAA ++
Sbjct: 58 LLDALGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLAADAAALLAL 117
Query: 202 LAPKVADRN--DAIEQVKK--LYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA 257
L + D + +A+ ++ L + E D + + ++L
Sbjct: 118 LRAALLDADLREALARLTVPVLV-IHGEDD------PLVPPEAARRLA-----------E 159
Query: 258 AFRQKEIFALRD----PTQEDPREVAAA 281
A E+ L P E P EVA A
Sbjct: 160 ALPGAELVVLPGAGHLPHLEHPEEVAEA 187
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. Carbamoyl-phosphate synthase (CPSase)
catalyzes the first committed step in pyrimidine,
arginine, and urea biosynthesis. In general, it is a
glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II
in eukaryotes. An exception is the mammalian
mitochondrial urea-cycle form, CPSase I, in which the
glutamine amidotransferase domain active site Cys on the
small subunit has been lost, and the enzyme is
ammonia-dependent. In both CPSase I and the closely
related, glutamine-dependent CPSase III (allosterically
activated by acetyl-glutamate) demonstrated in some
other vertebrates, the small and large chain regions are
fused in a single polypeptide chain. This model
represents the large chain of glutamine-hydrolysing
carbamoyl-phosphate synthases, or the corresponding
regions of larger, multifunctional proteins, as found in
all domains of life, and CPSase I forms are considered
exceptions within the family. In several thermophilic
species (Methanobacterium thermoautotrophicum,
Methanococcus jannaschii, Aquifex aeolicus), the large
subunit appears split, at different points, into two
separate genes [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 1050
Score = 28.8 bits (65), Expect = 6.4
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 36 AELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLG 86
E M + G VP+ SV+E A ++ +P ++V+ GG G G
Sbjct: 132 REAMKEIGEPVPESEIAHSVEEALAAAKEIGYP----VIVRPAFTLGGTGGG 179
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 28.6 bits (65), Expect = 7.1
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 332 QVVEAFK-----ILTSDEKVK---AILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR 383
+V K L +EK K A+ + GG + D++ A+ ++VP +
Sbjct: 253 EVRAELKRRGAYFLNEEEKEKLEKALFDD--GGTLNPDIVGKSAQKIAELAGIEVPEDTK 310
Query: 384 L---EGTNVDQGKRILKES---GMTLITAEDLDDAAEKAVK 418
+ E T V + + +E + AED ++A EKA +
Sbjct: 311 VLVAEETGVGPEEPLSREKLSPVLAFYRAEDFEEALEKARE 351
>gnl|CDD|233813 TIGR02291, rimK_rel_E_lig, alpha-L-glutamate ligase-related
protein. Members of this protein family contain a
region of homology to the RimK family of
alpha-L-glutamate ligases (TIGR00768), various members
of which modify the Glu-Glu C-terminus of ribosomal
protein S6, or tetrahydromethanopterin, or a form of
coenzyme F420 derivative. Members of this family are
found so far in various Vibrio and Pseudomonas species
and some other gamma and beta Proteobacteria. The
function is unknown.
Length = 317
Score = 28.3 bits (63), Expect = 7.4
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 43 GINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVH----- 97
GI VP+ V K I + DH + V+K +GG+G+ S G
Sbjct: 49 GITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKDGRYRKPSGA 108
Query: 98 IVKKEEVE 105
+ KEE+E
Sbjct: 109 TINKEEIE 116
>gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine
ligase/glutathione synthetase; Provisional.
Length = 752
Score = 28.7 bits (65), Expect = 7.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 38 LMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK 89
++A+ G VP G S++E F D K +VVK + G G+ FK
Sbjct: 495 ILAEAGFPVPAGDEFTSLEEALADY-SLFAD-KAIVVKPKSTNFGLGISIFK 544
>gnl|CDD|185712 cd07902, Adenylation_DNA_ligase_III, Adenylation domain of DNA
Ligase III. ATP-dependent polynucleotide ligases
catalyze phosphodiester bond formation using nicked
nucleic acid substrates with the high energy nucleotide
of ATP as a cofactor in a three-step reaction
mechanism. DNA ligases play a vital role in the diverse
processes of DNA replication, recombination and repair.
ATP-dependent ligases are present in many organisms
such as viruses, bacteriophages, eukarya, archaea and
bacteria. There are three classes of ATP-dependent DNA
ligases in eukaryotic cells (I, III and IV). DNA ligase
III is not found in lower eukaryotes and is present
both in the nucleus and mitochondria. It has several
isoforms; two splice forms, III-alpha and III-beta,
differ in their carboxy-terminal sequences. DNA ligase
III-beta is believed to play a role in homologous
recombination during meiotic prophase. DNA ligase
III-alpha interacts with X-ray Cross Complementing
factor 1 (XRCC1) and functions in single nucleotide
Base Excision Repair (BER). The mitochondrial form of
DNA ligase III originates from the nucleolus and is
involved in the mitochondrial DNA repair pathway. This
isoform is expressed by a second start site on the DNA
ligase III gene. DNA ligases have a highly modular
architecture consisting of a unique arrangement of two
or more discrete domains. The adenylation and
C-terminal oligonucleotide/oligosaccharide binding
(OB)-fold domains comprise a catalytic core unit that
is common to most members of the ATP-dependent DNA
ligase family. The adenylation domain binds ATP and
contains many active site residues. The common
catalytic core unit comprises six conserved sequence
motifs (I, III, IIIa, IV, V and VI) that define this
family of related nucleotidyltransferases.
Length = 213
Score = 28.1 bits (63), Expect = 7.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 VDEVKKAIQDAFPDHKELVVKSQIL 79
V K I AFP +++ S++L
Sbjct: 71 VAHFKDYIPKAFPHGHSMILDSEVL 95
>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
Provisional.
Length = 420
Score = 28.5 bits (65), Expect = 7.6
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRG 84
+ MA+YGI +E + + +VVK+ LA G+G
Sbjct: 108 DFMARYGIPTAAYETFTDAEEALAYLDEKGAP---IVVKADGLAAGKG 152
>gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine
protease, has catalytic Ser-Lys dyad. Signal peptide
peptidase A (SppA; Peptidase S49; Protease IV): SppA is
found in all three domains of life and is involved in
the cleavage of signal peptides after their removal from
the precursor proteins by signal peptidases. This
subfamily contains members with either a single domain
(sometimes referred to as 36K type), such as sohB
peptidase, protein C and archaeal signal peptide
peptidase, or an amino-terminal domain in addition to
the carboxyl-terminal protease domain that is conserved
in all the S49 family members (sometimes referred to as
67K type), similar to E. coli and Arabidopsis thaliana
SppA peptidases. Site-directed mutagenesis and sequence
analysis have shown these SppAs to be serine proteases.
The predicted active site serine for members in this
family occurs in a transmembrane domain. Mutagenesis
studies also suggest that the catalytic center comprises
a Ser-Lys dyad and not the usual Ser-His-Asp catalytic
triad found in the majority of serine proteases.
Interestingly, the single membrane spanning E. coli SppA
carries out catalysis using a Ser-Lys dyad with the
serine located in the conserved carboxy-terminal
protease domain and the lysine in the non-conserved
amino-terminal domain.
Length = 208
Score = 27.8 bits (63), Expect = 7.9
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 325 GGNASEGQVVEAFKILTSDEKVKAILVNIF--GGIMKCDVIASGIVNAA-KQVA-LKVPV 380
GG ++E + D+ VKA+++ I GG V+AS + +++ K PV
Sbjct: 14 GGGIGADSLIEQLRKAREDDSVKAVVLRINSPGG----SVVASEEIYREIRRLRKAKKPV 69
Query: 381 VV 382
V
Sbjct: 70 VA 71
>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed.
Length = 282
Score = 28.1 bits (63), Expect = 7.9
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 15/62 (24%)
Query: 153 TAGPIIIGCSKGGTSIEDLAEKYPNMIV-----KVPIDVF----NGITDEDAAKVVDGLA 203
AGP+++G + S+ DL P + P +VF N + D D D L
Sbjct: 23 LAGPVVVGVAYAADSVADLFS--PAAVALFAYFLFPANVFLYGVNDVFDAD----TDELN 76
Query: 204 PK 205
PK
Sbjct: 77 PK 78
>gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional.
Length = 275
Score = 28.1 bits (63), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 167 SIEDLAEKYPNMIVKVPIDVFNGITDEDAA 196
++ DLAEKY + ++ + +DV TD A
Sbjct: 39 TLADLAEKYGDRLLPLALDV----TDRAAV 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0868 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,548,426
Number of extensions: 2188845
Number of successful extensions: 2627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2603
Number of HSP's successfully gapped: 74
Length of query: 422
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 323
Effective length of database: 6,546,556
Effective search space: 2114537588
Effective search space used: 2114537588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.6 bits)