RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014588
(422 letters)
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 647 bits (1671), Expect = 0.0
Identities = 201/394 (51%), Positives = 270/394 (68%), Gaps = 3/394 (0%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58
Query: 88 FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K E V LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 59 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
+N A +Q+KKLY LF + D T +E+NP ET Q+V DAK+NFDDNA FRQK+IFA
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 238
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
+ D ++ +P E AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 239 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 298
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386
E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI A +++ LKVP+VVRLEG
Sbjct: 299 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEG 358
Query: 387 TNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
TNV + + IL SG+ + +A DL+DAA+KAV ++
Sbjct: 359 TNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 392
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 620 bits (1601), Expect = 0.0
Identities = 174/394 (44%), Positives = 242/394 (61%), Gaps = 10/394 (2%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+HEYQ +L A+YG+ P G A + E ++A VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKI--GAGPWVVKCQVHAGGRGKA- 57
Query: 88 FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
GGV +V KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 58 ------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
++DR + + + ++GG IE +AE+ P++I KV +D G ++ L +
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEG 171
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
+ L +F E D L+EINPL T L+ D KL D NA FRQ ++
Sbjct: 172 KLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLRE 231
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
+RD +QEDPRE AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG
Sbjct: 232 MRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGG 291
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEG 386
A++ +V EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A +V + VPVVVRLEG
Sbjct: 292 GATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEG 351
Query: 387 TNVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
N + G + L +SG+ +I A+ L DAA++ V A+
Sbjct: 352 NNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV 385
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 533 bits (1375), Expect = 0.0
Identities = 134/393 (34%), Positives = 210/393 (53%), Gaps = 21/393 (5%)
Query: 29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTF 88
N+HEYQ E++A+YG+ VP G + +E K+ ++ K +V+K+Q+ GGRG
Sbjct: 2 NLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEF---GKRVVIKAQVHVGGRGKA-- 56
Query: 89 KSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147
GGV + +E + A +LG + +G V KV + E + + E Y +
Sbjct: 57 -----GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGL 104
Query: 148 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVA 207
+LDR +++ +GG IE++A + P I K ID G +A ++V +
Sbjct: 105 ILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLE-G 163
Query: 208 DRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFAL 267
+ N + + LY+ + D ++ EINPL T+ +VAADAK+ DDNA FR ++ L
Sbjct: 164 NLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAEL 223
Query: 268 RDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN 327
R+ E P EV A+ Y+ LDG IG + NGAGL M T+D++ GG PANFLD+GG
Sbjct: 224 REVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGG 283
Query: 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGT 387
A V A K++ D VK + +NIFGGI + D +A G++ A ++ L PVV+R+ GT
Sbjct: 284 AKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGT 343
Query: 388 NVDQGKRILKESGMTLITAEDLDDAAEKAVKAI 420
++ K++L+ + +AA+ V
Sbjct: 344 AEEEAKKLLEGKP--VYMYPTSIEAAKVTVAMK 374
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 428 bits (1102), Expect = e-149
Identities = 89/411 (21%), Positives = 140/411 (34%), Gaps = 55/411 (13%)
Query: 30 IHEYQGAELMAKYGINVPKG------LAVASVDEVKKAIQDA-FPDHKELVVKSQILAGG 82
I E G EL+ K+ V + + +QD + + LVVK L
Sbjct: 6 ISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKR 65
Query: 83 RGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL--SL 139
RG G V + + V+ LGQ G + + + S
Sbjct: 66 RGKL-------GLVGVNLTLDGVKSWLKPRLGQ---EATVGKATGFLKNFLIEPFVPHSQ 115
Query: 140 VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 199
E Y I R G ++ +GG + D+ K ++V +D D +V
Sbjct: 116 AEEFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLV--GVDEKLNPEDIKKHLLV 171
Query: 200 DGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAF 259
+ + L+ + + T LEINPL T + D D A +
Sbjct: 172 HAPE---DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADY 227
Query: 260 RQKEIFAL-------------RDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMA 306
K + + D + A L + G I MV G G ++
Sbjct: 228 ICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVV 287
Query: 307 TMDIIKLHGGT--PANFLDVGGNASEGQVVEAFKI----LTSDEKVKAILVNIFGGIMKC 360
D I GG AN+ + G SE Q + K +T ++ ++ I G I
Sbjct: 288 YSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANF 347
Query: 361 DVIAS---GIVNAAKQVA-----LKVPVVVRLEGTNVDQGKRILKESGMTL 403
+A+ GIV A + +V + VR G N +G R++ E G T
Sbjct: 348 TNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTT 398
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 164 bits (417), Expect = 1e-44
Identities = 100/412 (24%), Positives = 154/412 (37%), Gaps = 57/412 (13%)
Query: 30 IHEYQGAELMAKY-----GINVPKGLAVASVDEVKKAIQDAFP--DHKELVVKSQILAGG 82
I E G EL+ K+ I A + D + P + LVVK L
Sbjct: 6 ISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKR 65
Query: 83 RGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLG-QILVTKQTGPQGKIVSKVYLCEKLSLV 140
RG K GL V + + V+ LG + V K TG + + ++ +
Sbjct: 66 RG----KLGL---VGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQA-- 116
Query: 141 NEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 200
E Y I R+ G ++ +GG + D+ K K+ + V + ED K +
Sbjct: 117 EEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAK----AQKLLVGVDEKLNPEDIKKHLL 170
Query: 201 GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
AP+ + + L+ + + T LEINPL T V D D A +
Sbjct: 171 VHAPE-DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVL-DLAAKVDATADYI 228
Query: 261 QKEIFAL--------RDPTQE-------DPREVAAAKADLNYIGLDGEIGCMVNGAGLAM 305
K + R+ E D + A+ K L + G I MV G G ++
Sbjct: 229 CKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLK--LTLLNPKGRIWTMVAGGGASV 286
Query: 306 ATMDIIKLHGGTP--ANFLDVGGNASEGQVVE----AFKILTSDEKVKAILVNIFGGIMK 359
D I GG AN+ + G SE Q + ++T ++ ++ I G I
Sbjct: 287 VYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIAN 346
Query: 360 C-DVIA--SGIVNAAKQVAL-----KVPVVVRLEGTNVDQGKRILKESGMTL 403
+V A GIV A + +V + VR G N +G R++ E G T
Sbjct: 347 FTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTT 398
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 74/437 (16%), Positives = 143/437 (32%), Gaps = 128/437 (29%)
Query: 25 LRRLNIHEYQGAELMAKYGINVPKGL-AVASV--DEVKKAI--------QDAFPDHK-EL 72
R L + G+ ++ + VP +AS ++ K + D P EL
Sbjct: 6 TRPLTLS--HGS---LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 73 VVK------SQILAGGRG---------LGTFKSG-LKGG-VHIVKKEEVEDLAGKMLGQI 115
V K S + G L F++ L+G +H LA K+L +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH--------ALAAKLLQE- 111
Query: 116 LVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY 175
T + K + K Y A ++ ++ P K S L
Sbjct: 112 --NDTTLVKTKELIKNY-----------ITARIMAKR---PF----DKKSNSA--LFRAV 149
Query: 176 PNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINP 235
++ + +F G G + +D E+++ LY+ + L+
Sbjct: 150 GEGNAQL-VAIFGG----------QG------NTDDYFEELRDLYQTYH----VLVG--D 186
Query: 236 LAETSGKQLVAADAKLNFDDNAAFRQK-EIFA-LRDPTQEDPRE-VAAAKADLNYIGLDG 292
L + S + L + + D F Q I L +P+ ++ + + IG+
Sbjct: 187 LIKFSAETL-SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV-- 243
Query: 293 EIGCMVNGAGLAMAT-MDIIKLHGGTPANFLD-VGGNASEGQ-VVEAFKILTSD------ 343
+ +A + KL G TP + G Q +V A I +D
Sbjct: 244 ----------IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 344 EKVKAILVNIF--GGIMKC------DVIASGIVNAAKQVALKVP---VVVRLEGTNVDQG 392
V+ + +F G ++C + I+ + + VP + + +Q
Sbjct: 294 VSVRKAITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS--NLTQEQV 349
Query: 393 KRILKESGMTLITAEDL 409
+ + ++ L + +
Sbjct: 350 QDYVNKTNSHLPAGKQV 366
Score = 51.6 bits (123), Expect = 4e-07
Identities = 54/288 (18%), Positives = 88/288 (30%), Gaps = 97/288 (33%)
Query: 142 EMY-FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID-------VFNGITDE 193
+ Y F+I LD P+ + GG + + E Y MI + +D +F I +E
Sbjct: 1655 DTYGFSI-LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI-NE 1712
Query: 194 DAAKVVDGLAPK-----------------VADRNDAIEQVKKLYKLFCESDCTL----L- 231
+ + K A A E +K K +D T L
Sbjct: 1713 HSTSYTFR-SEKGLLSATQFTQPALTLMEKA----AFEDLKS--KGLIPADATFAGHSLG 1765
Query: 232 EINPLAETSGKQLVA-ADAKLNFDDNAAFRQKEIFALR-------DPTQEDPREVAAAKA 283
E A L + AD ++ + E+ R P E R A
Sbjct: 1766 EYA--A------LASLADV-MSIES-LV----EVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 284 DLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGT--PANFLDVGGNASEGQVVEAFKILT 341
+N G + + L + K G N+ N Q V A
Sbjct: 1812 -IN----PGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-----NVENQQYVAA----- 1856
Query: 342 SDEKVKAI--LVNI--FGGIMKCDVIASGIVNAAKQVALKVPVVVRLE 385
++A+ + N+ F + K D+I ++ + LE
Sbjct: 1857 --GDLRALDTVTNVLNFIKLQKIDII-------------ELQKSLSLE 1889
Score = 43.9 bits (103), Expect = 1e-04
Identities = 49/293 (16%), Positives = 93/293 (31%), Gaps = 109/293 (37%)
Query: 50 LAVASVDE-------VKKAI----------QDAFPDHK-ELVVKSQILAGGRGLGTFKSG 91
+A+A D V+KAI +A+P+ + L G+ +
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 92 LKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN---------- 141
+ + +E+V+D K T P GK V +SLVN
Sbjct: 341 ISN----LTQEQVQDYVNK-------TNSHLPAGKQVE-------ISLVNGAKNLVVSGP 382
Query: 142 --EMY-FAIMLDRKTAGPIIIGCSKGGTS-----------------------------IE 169
+Y + L RK P + S+ S +
Sbjct: 383 PQSLYGLNLTL-RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 170 DLAEK---YPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAI--EQV--KKLYKL 222
DL + + +++P V++ D + ++ ++ D I V +
Sbjct: 442 DLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISERIV---DCIIRLPVKWETT--- 493
Query: 223 FCESDCT-LLEINP------------LAETSGKQLV-AADAKLNFDDNAAFRQ 261
+ T +L+ P + +G +++ A +N DD+ F+Q
Sbjct: 494 -TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 42.0 bits (98), Expect = 4e-04
Identities = 47/279 (16%), Positives = 74/279 (26%), Gaps = 111/279 (39%)
Query: 34 QGAEL--MAK--YGINVPKGLAVASV-DEVKKAIQDAF-----------PDHKELVV--- 74
QG++ M Y A V + +D + P L +
Sbjct: 1624 QGSQEQGMGMDLYK-TSK---AAQDVWNRADNHFKDTYGFSILDIVINNP--VNLTIHFG 1677
Query: 75 --KSQILAGGRGLGTFKSGLKGGVHIVK--KEEVEDLAGKMLGQILVTKQTGPQGKIVSK 130
K + + F++ + G + K KE E +G +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR--------SEKGLL--- 1726
Query: 131 VYLCEK----LSLVNEMYFAIMLDRKTAGPII---------IG-----CSKGGT-SIEDL 171
+ L+L+ + F + K+ G I +G S SIE L
Sbjct: 1727 -SATQFTQPALTLMEKAAFEDL---KSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 172 AE--KY---------PN---------MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRND 211
E Y P MI P V + E VV+ + +
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW--- 1839
Query: 212 AIEQVKKLYKLFCESDCTLLEI---NPLAETSGKQLVAA 247
L+EI N +Q VAA
Sbjct: 1840 ------------------LVEIVNYN----VENQQYVAA 1856
Score = 39.6 bits (92), Expect = 0.002
Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 58/222 (26%)
Query: 241 GKQL-----VAADAKLNFDD-NAAFRQKEIFALRDPTQEDPREVA-------AAKADLNY 287
G L A D ++ + F+ F++ D +P + + NY
Sbjct: 1632 GMDLYKTSKAAQDV---WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 288 IGLDGEI---GCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQ----VVE--AFK 338
+ E G + + L Q ++E AF+
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT---QPALTLMEKAAFE 1745
Query: 339 ILTSDEKVKAILVNIFGGIMKCDVIA-------SGIVNAAK----QVALKVPVVVR--LE 385
L S G I A + + + A + ++V V R
Sbjct: 1746 DLKSK-----------GLIPADATFAGHSLGEYAALASLADVMSIESLVEV-VFYRGMTM 1793
Query: 386 GTNVDQGKRILKESGM-----TLITAEDLDDAAEKAVKAIAS 422
V + + GM + A +A + V+ +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 1e-05
Identities = 57/358 (15%), Positives = 100/358 (27%), Gaps = 102/358 (28%)
Query: 98 IVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVY-----LCEKLSLVNEMYFAIMLDRK 152
I+ KEE++ I+++K VS L K + + + +L
Sbjct: 45 ILSKEEIDH--------IIMSKDA------VSGTLRLFWTLLSKQEEMVQKFVEEVLR-- 88
Query: 153 TAGPIIIGCSKGGTSIEDLAEKY------PNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
+ + L P+M+ ++ I+ + + ++ A
Sbjct: 89 -------------INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-----NQVFAKYN 130
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAET-------SGKQLVAADAKLNFDDNAAF 259
R ++++ LLE+ P SGK VA D L++
Sbjct: 131 VSRLQPYLKLRQ----------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 260 RQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIK------L 313
+IF L P V L Y +D + + + I+ L
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 314 HGGTPANFLDVGGNASEGQVVEAF----KIL--TSDEKVKAILVNIFGGIMKCDVIASGI 367
N L V N + AF KIL T ++V L
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--------------- 283
Query: 368 VNAAKQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEK----AVKAIA 421
+ + D+ K +L +DL + IA
Sbjct: 284 -----ATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIA 334
Score = 43.7 bits (102), Expect = 1e-04
Identities = 52/349 (14%), Positives = 105/349 (30%), Gaps = 130/349 (37%)
Query: 7 NKLVSRSLTVAGQWQ-QQQLRRLNIHEYQGAELMAKYGINVPKG-----------LAVAS 54
K V+ L+ A + + + L+ KY ++ ++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSI 332
Query: 55 V-------------------DEVKKAIQDAF-----PDHKELVVKSQILAGGRGLGTFKS 90
+ D++ I+ + +++++ + L F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---------LSVFPP 383
Query: 91 GLKGGVHI-----------VKKEEVEDLAGKMLGQILVTKQTGPQGKIVS--KVYLCEKL 137
HI V K +V + K+ LV KQ P+ +S +YL K+
Sbjct: 384 S----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKV 437
Query: 138 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY-PNMIVKVPID--VFNGI---- 190
L NE L R I+ + + + + ++ +D ++ I
Sbjct: 438 KLENEYA----LHRS-----IVDHYN-------IPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 191 -----TDEDA-------------AKVV-DGLA-PKVADRNDAIEQVKKLYKLF-CESD-- 227
+ K+ D A + ++Q+K YK + C++D
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPK 540
Query: 228 -----CTLLEINPLAETSGKQLVAADAK------LNFDDNA----AFRQ 261
+L+ P E L+ + L +D A A +Q
Sbjct: 541 YERLVNAILDFLPKIEE---NLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 38.7 bits (89), Expect = 0.004
Identities = 42/259 (16%), Positives = 71/259 (27%), Gaps = 91/259 (35%)
Query: 2 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA 61
V ++NKL SL V Q ++ + I E+K
Sbjct: 404 VMVVVNKLHKYSL-VEKQPKESTIS---IPSIY---------------------LELKVK 438
Query: 62 IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKG------GVHIVKKEEVEDLAGKMLGQI 115
+++ + H+ +V I L G H+ E E +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT------- 491
Query: 116 LVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK--TAGPIIIGCSKGGTSIEDLAE 173
+ V+L + F L++K +++ L +
Sbjct: 492 -----------LFRMVFL--------DFRF---LEQKIRHDSTAWNASGSILNTLQQL-K 528
Query: 174 KYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQ-VKKL-YKLFCESDCTLL 231
Y I D D PK +AI + K+ L C LL
Sbjct: 529 FYKPY-----------ICDND---------PKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 232 EI------NPLAETSGKQL 244
I + E + KQ+
Sbjct: 569 RIALMAEDEAIFEEAHKQV 587
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 44.5 bits (106), Expect = 4e-05
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 20/134 (14%)
Query: 301 AGLAMATMD---IIKLH-----GGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVN 352
GL +AT++ I +L N +D+ +A K+L D V ++
Sbjct: 316 RGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAI 375
Query: 353 IFGGIM---KCDVIASGIVNAAKQVALKVPVVV-RLEGTNVDQGKRILKESGM-TLITAE 407
A GI+ A K+V + PV+ + G ++ K +L+++G+ T E
Sbjct: 376 CVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPTYERPE 435
Query: 408 DLDDAAEKAVKAIA 421
D A
Sbjct: 436 D-------VASAAY 442
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 40.0 bits (94), Expect = 0.001
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRG 84
E KY +N + V + +E+K A+++ P ++VK+ L G +G
Sbjct: 115 EAFKKYNVNTARHFVVRNENELKNALENLKLP----VIVKATDLQGSKG 159
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national
on protein structural and functional analyses; 2.00A
{Pyrococcus horikoshii}
Length = 238
Score = 37.6 bits (88), Expect = 0.005
Identities = 48/245 (19%), Positives = 101/245 (41%), Gaps = 47/245 (19%)
Query: 26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDE-VKKAIQDAFPDHKELVVKSQILAGGRG 84
R + EY+ +++ YG+ VP+ ++DE ++ A + +P +V+K
Sbjct: 16 GRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYP----VVLK----LMSPQ 67
Query: 85 LGTFKSGLKGGVH--IVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142
+ KS V I +EE++ ++ K+ P +I+ V + L E
Sbjct: 68 I-LHKSDA-KVVMLNIKNEEELKKKWEEIHENA---KKYRPDAEILG-VLVAPMLKPGRE 121
Query: 143 MYFAIMLDRKTAGPIIIGCSKGGTSIE---DLAEKYPNMIVKVPIDVFNGITDEDAAKVV 199
+ + D G I+ GG +E D+ ++ IT++DA K++
Sbjct: 122 VIIGVTED-PQFGHAIM-FGLGGIFVEILKDVT-------FRLV-----PITEKDARKMI 167
Query: 200 DGL--AP--------KVADRNDAIEQVKKLYKLFCESDCTL--LEINPL-AETSGKQLVA 246
+ P + AD + ++ + K+ KL + + +++NP+ G+ V
Sbjct: 168 QEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVI 227
Query: 247 ADAKL 251
D+++
Sbjct: 228 VDSRI 232
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 35.3 bits (81), Expect = 0.045
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 38 LMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLK 93
++ K G NVP+ + S+++ + A +++ +V+K + G G+ F+ G++
Sbjct: 496 VLQKAGFNVPQSVEFTSLEKAVASY--ALFENRAVVIKPKSTNYGLGITIFQQGVQ 549
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 34.5 bits (79), Expect = 0.080
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 38 LMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK 89
++ + P G E K +VVK + G G+ FK
Sbjct: 491 ILDEKHFPTPFGDEFTDRKEALNYFSQI--QDKPIVVKPKSTNFGLGISIFK 540
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.088
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 10/38 (26%)
Query: 21 QQQQLRRLNIHEYQGAELMAKYGIN-VPKGLAV-ASVD 56
++Q L++L Q + + Y + P LA+ A+++
Sbjct: 18 EKQALKKL-----QAS--LKLYADDSAP-ALAIKATME 47
Score = 31.8 bits (71), Expect = 0.20
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 214 EQVKKL---YKLFCESDCTLLEINPLAE 238
+ +KKL KL+ + L I E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 24/49 (48%)
Query: 372 KQVALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEK-AVKA 419
KQ ALK +L+ + LK + A DD+A A+KA
Sbjct: 19 KQ-ALK-----KLQAS--------LK------LYA---DDSAPALAIKA 44
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 33.4 bits (76), Expect = 0.15
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRG 84
+ K G+ K V ++++ + A+++ P L++K LA G
Sbjct: 145 DAFNKAGVKSIKNKRVTTLEDFRAALEEIGTP----LILKPTYLASSIG 189
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.26
Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 32/132 (24%)
Query: 257 AAFRQKEIFALRDPTQEDPREVAAAKADLNYI--GLDGEIGCM---VNGAGLAMATMDII 311
R +EI E ++ AA+ D I + + GL + + +
Sbjct: 1287 LLERTREIHN------EAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVA 1340
Query: 312 KLHG-GTPAN-----------FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMK 359
HG T AN +G + + K LT K A G M
Sbjct: 1341 SFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAA------GAWMM 1394
Query: 360 ---CDVIASGIV 368
++ SGI+
Sbjct: 1395 NGALQILNSGII 1406
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural
genomics, protein structure initiative; HET: XLF; 1.41A
{Alkaliphilus metalliredigens}
Length = 330
Score = 32.1 bits (74), Expect = 0.33
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 316 GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVA 375
+F++ + + E + I F D+ A+ ++ A K+
Sbjct: 202 DLEIDFIEFQHDFQVKMLEEDINSMKDIVNYDGI----FVF---NDIAAATVMRALKKRG 254
Query: 376 LKVP 379
+ +P
Sbjct: 255 VSIP 258
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 31.0 bits (70), Expect = 0.79
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRG 84
E + GI + A + E A + VK + +
Sbjct: 120 EYCLRQGIAHARTYATMASFE---EALAAGEVQLPVFVKPRNGSASIE 164
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural
genomics, protein structure initiative; 2.08A
{Lactobacillus plantarum WCFS1}
Length = 290
Score = 29.8 bits (68), Expect = 1.4
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 335 EAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVP 379
+A K + + I+ D+ A GI+N A ++VP
Sbjct: 175 QAMKAFGKNTDLTGIIAA-------SDMTAIGILNQASSFGIEVP 212
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal
peptide digestion, bacterial membrane, hydrolase; 2.37A
{Bacillus subtilis}
Length = 240
Score = 29.5 bits (67), Expect = 1.9
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 310 IIKLHG----GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF---GGIMKCDV 362
++++ G ++ L + ++ + D+ VK I++ + GG+ +
Sbjct: 7 VLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAE 66
Query: 363 IASGIVNAAKQVALKVPVVV 382
I + K+ K P+ V
Sbjct: 67 IHKKLEEIKKET--KKPIYV 84
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge
domai dimerization, DNA binding, cell cycle; 1.70A
{Pyrococcus furiosus}
Length = 189
Score = 29.1 bits (66), Expect = 2.0
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 304 AMATMDIIKLHGGTPANF--LDV--GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMK 359
A + +K H F L+ + + A ++ D+K++ + G +
Sbjct: 74 AEKAIKYLKEHKLGRLTFLPLNKIKPKHVDSSVGLPAVDVIEYDQKIENAVKFALGDTVI 133
Query: 360 CDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG 392
+ + A+ KV +V +EG ++
Sbjct: 134 VNSM-----EEARPHIGKVRMVT-IEGELYERS 160
>3l51_A Structural maintenance of chromosomes protein 2; structural
maintenance of chromosomes (SMC), hinge domain, C cycle,
cell division, cytoplasm; 1.51A {Mus musculus}
Length = 161
Score = 28.7 bits (65), Expect = 2.0
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGI 367
++ I P V A ++ +++ + +FG C+ +
Sbjct: 73 LNKISARCIAPETLRVAQNLVGPDNVHVALSLVDYKPELQKGMEFVFGTTFVCNNM---- 128
Query: 368 VNAAKQVALKVPVVVR---LEGTNVDQG 392
+ AK+VA ++ R L G D
Sbjct: 129 -DNAKKVAFDKRIMTRTVTLGGDVFDPH 155
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.61A
{Clostridium acetobutylicum} SCOP: c.23.10.7
Length = 290
Score = 29.0 bits (64), Expect = 2.7
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 141 NEMYFAIMLDRKTAGPII--IGCSKGGTSIEDL---AEKYPNMIVKVPIDVFNG 189
FA +K II I C++GG+SI++ + + + + + +
Sbjct: 56 LAGSFADAWSQKNQEDIIGLIPCAEGGSSIDEWALDGVLFRHALTEAKFAMESS 109
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 29.0 bits (66), Expect = 3.0
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 19 QWQQQQLRRLNIHEYQG---AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVV 74
Q + N E+ + +G G +V ++ A+Q A D + +
Sbjct: 486 TLMNHQFGQNNWTEFMNPDWVGIAKAFGA---YGESVRETGDIAGALQRAI-DSGKPAL 540
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 29.3 bits (66), Expect = 3.1
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 332 QVVEAFK-----ILTSDEKVK-AILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRL- 384
V+ F+ L+ E V+ + G M ++ + + A L VP R+
Sbjct: 266 AVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIANLAGLTVPADARVL 325
Query: 385 --EGTNVDQGKRILKESGM---TLITAEDLDDAAEKAVK 418
E T V +E TAE +A E ++
Sbjct: 326 IAEETKVGAKIPYSREKLAPILAFYTAETWQEACELSMD 364
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A
{Pseudomonas aeruginosa} SCOP: d.212.1.1
Length = 129
Score = 27.7 bits (61), Expect = 4.4
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 376 LKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421
+ V V++ + + + SG + D +A AV+ +
Sbjct: 52 MSVEVLIEMLPDGTITNASVSRSSGD-----KPFDSSAVAAVRNVG 92
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 28.3 bits (64), Expect = 5.7
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 12 RSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE 71
S + +Q + ++ +++ A++ A G G+ V + E+K A+ AF
Sbjct: 477 ASWEMLRTFQPES-AFNDLDDWRFADMAAGMGG---DGVRVRTRAELKAALDKAFATRGR 532
Query: 72 LVV 74
+
Sbjct: 533 FQL 535
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding
protein, structural genomics, protein structure
initiative; 1.60A {Lactobacillus acidophilus}
Length = 277
Score = 27.9 bits (63), Expect = 6.0
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 322 LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVP 379
+ + A L + AI+ D+ A+ I+ AK+ LK+P
Sbjct: 155 YLLEETPENNPYISAQSALNKSNQFDAIITV-------NDLYAAEIIKEAKRRNLKIP 205
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 27.8 bits (62), Expect = 6.5
Identities = 6/42 (14%), Positives = 22/42 (52%)
Query: 177 NMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK 218
N++V + +D + ++ ++D + + N+ I ++++
Sbjct: 229 NLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLRE 270
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L*
1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K*
3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O
1voy_O 1vp0_O
Length = 116
Score = 26.7 bits (60), Expect = 7.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 186 VFNGITDEDA-AKVVDGLAPKVADRN 210
V I D+D KV+D +APK A+R
Sbjct: 66 VAQDIHDKDVVRKVMDEVAPKYAERP 91
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 27.8 bits (62), Expect = 7.5
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 38 LMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTF 88
+AK G+ PK +E + ++ +P +V+K + G G
Sbjct: 95 ALAKAGLPQPKTALATDREEALRLMEAFGYP----VVLKP--VIGSWGRLLA 140
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Length = 205
Score = 27.5 bits (61), Expect = 7.5
Identities = 3/26 (11%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 186 VFNGITDEDA-AKVVDGLAPKVADRN 210
I ++ + + + +RN
Sbjct: 155 ALGFIYEKQIVHALFAEVPDRYGERN 180
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like
domain, Trp repressor-like domain, helix-turn-helix
motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB:
1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q
2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R
2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Length = 118
Score = 26.7 bits (60), Expect = 8.0
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 186 VFNGITDEDA-AKVVDGLAPKVADRN 210
V + D K+ D +AP+ DR
Sbjct: 66 VLRDLQDVKLVRKLFDEIAPRYRDRQ 91
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N*
3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N
1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N ...
Length = 120
Score = 26.7 bits (60), Expect = 8.3
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 186 VFNGITDEDA-AKVVDGLAPKVADRN 210
F D + AK+ + L P+ A R
Sbjct: 66 AFARTRDNEIVAKLFNELGPRFASRA 91
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 27.5 bits (62), Expect = 8.8
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGL-KG 94
+ M GI++ V+ V + + + + +LA GR T GL +
Sbjct: 239 NDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERA 298
Query: 95 GVHIVKKEEVE 105
GV + + V
Sbjct: 299 GVKVNEFGAVV 309
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI
hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Length = 330
Score = 27.4 bits (61), Expect = 10.0
Identities = 4/33 (12%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 389 VDQG-KRILKESGMTLITAEDLDDAAEKAVKAI 420
+Q + +++E + L + + + + ++ V+
Sbjct: 187 TEQSERDVIRELQIPLFSVDAIRENMQEVVQKT 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,537,475
Number of extensions: 436523
Number of successful extensions: 1659
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1618
Number of HSP's successfully gapped: 90
Length of query: 422
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 326
Effective length of database: 4,021,377
Effective search space: 1310968902
Effective search space used: 1310968902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)