RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014588
(422 letters)
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 189 bits (482), Expect = 8e-60
Identities = 93/147 (63%), Positives = 118/147 (80%)
Query: 274 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQV 333
DPRE AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V
Sbjct: 1 DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERV 60
Query: 334 VEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393
EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A +V + VPVVVRLEG N + G
Sbjct: 61 TEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGA 120
Query: 394 RILKESGMTLITAEDLDDAAEKAVKAI 420
+ L +SG+ +I A+ L DAA++ V A+
Sbjct: 121 KKLADSGLNIIAAKGLTDAAQQVVAAV 147
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 189 bits (481), Expect = 1e-59
Identities = 92/147 (62%), Positives = 115/147 (78%)
Query: 274 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQV 333
+P E AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG E QV
Sbjct: 1 EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQV 60
Query: 334 VEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGK 393
+AFK+LT+D KV+AILVNIFGGI+ C +IA+GI A +++ LKVP+VVRLEGTNV + +
Sbjct: 61 YQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQ 120
Query: 394 RILKESGMTLITAEDLDDAAEKAVKAI 420
IL SG+ + +A DL+DAA+KAV ++
Sbjct: 121 NILTNSGLPITSAVDLEDAAKKAVASV 147
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 182 bits (462), Expect = 1e-55
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 8/246 (3%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+HEYQ +L A+YG+ P G A + E ++A VVK Q+ AGGRG
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASK--IGAGPWVVKCQVHAGGRGKA- 57
Query: 88 FKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147
G + KE++ A LG+ LVT QT G+ V+++ + + E+Y
Sbjct: 58 -----GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112
Query: 148 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVA 207
++DR + + + ++GG IE +AE+ P++I KV +D G ++ L +
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172
Query: 208 DRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFAL 267
+ L +F E D L+EINPL T L+ D KL D NA FRQ ++ +
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREM 232
Query: 268 RDPTQE 273
RD +QE
Sbjct: 233 RDQSQE 238
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 172 bits (435), Expect = 1e-51
Identities = 109/246 (44%), Positives = 155/246 (63%), Gaps = 3/246 (1%)
Query: 28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
+N+ EYQ +LM+ G+ V + + +E +A + + KE+V+K+QILAGGRG G
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKR--LNAKEIVLKAQILAGGRGKGV 59
Query: 88 FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
F SGLKGGVH+ K E V LA +M+G L TKQT +G V+KV + E L + E Y A
Sbjct: 60 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
I++DR GP+++G +GG IE++A P +I K ID+ GI D A ++ + L
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
+N A +Q+KKLY LF + D T +E+NP ET Q+V DAK+NFDDNA FRQK+IFA
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 239
Query: 267 LRDPTQ 272
+ D ++
Sbjct: 240 MDDKSE 245
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 75.5 bits (185), Expect = 8e-17
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 28/153 (18%)
Query: 294 IGCMVNGAGLAMATMDIIKLHGGTPA---------------------NFLDVGGNASEGQ 332
+ M N G + T D + G A N +D+ +A
Sbjct: 6 VAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGED 65
Query: 333 VVEAFKILTSDEKVKAILVNIF---GGIMKCDVIASGIVNAAKQVALKVP-VVVRLEGTN 388
K+L D V ++ M A GI+ A K+V + P + + + G
Sbjct: 66 YYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV 125
Query: 389 VDQGKRILKESGMTLITAEDLDDAAEKAVKAIA 421
++ K +L+++G + T E +D A A A+
Sbjct: 126 SEKAKELLEKNG--IPTYERPEDVA-SAAYALV 155
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase
(CPS), large subunit ATP-binding domains {Escherichia
coli [TaxId: 562]}
Length = 275
Score = 36.1 bits (83), Expect = 0.005
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLG 86
M K G+ + +++E D FP +++ GG G G
Sbjct: 7 VAMKKIGLETARSGIAHTMEEALAVAADVGFP----CIIRPSFTMGGSGGG 53
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase
(CPS), large subunit ATP-binding domains {Escherichia
coli [TaxId: 562]}
Length = 259
Score = 36.2 bits (83), Expect = 0.005
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFKS 90
+ + + P V +++ + ++ +P LVV++ + GGR +
Sbjct: 4 HAVERLKLKQPANATVTAIEMAVEKAKEIGYP----LVVRASYVLGGRAMEIVYD 54
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 32.6 bits (73), Expect = 0.045
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQD 64
+AK G+ PK +E + ++
Sbjct: 6 VALAKAGLPQPKTALATDREEALRLMEA 33
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide
synthetase (GAR-syn), domain 2 {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 32.6 bits (73), Expect = 0.067
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGR 83
+ +A++ I + V+ +++ P +V+K+ LA G+
Sbjct: 7 DFLARHKIPTAEYQNFTEVEPALAYLREKGAP----IVIKADGLAAGK 50
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide
synthetase (GAR-syn), domain 2 {Thermotoga maritima
[TaxId: 2336]}
Length = 220
Score = 31.2 bits (69), Expect = 0.20
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVK 75
M KYGI + + +E+++ I+ P V+K
Sbjct: 7 RFMKKYGIRTARFEVAETPEELREKIKKFSPP----YVIK 42
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 27.7 bits (62), Expect = 0.53
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 381 VVRLEGTNVDQGKRILKESGMTLITAEDL 409
V + +N+D+ +LKE + L+ A DL
Sbjct: 40 NVVIRPSNMDKCIEVLKEKKVDLLAASDL 68
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId:
1245]}
Length = 228
Score = 29.2 bits (64), Expect = 0.67
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDH-KELVVKSQILAGGR 83
EL+ GI K + V + + + VK+
Sbjct: 7 ELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSV 54
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 28.1 bits (62), Expect = 1.5
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 281 AKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL 340
A+A +G+ G + ++G A + + G P F V + E +
Sbjct: 142 ARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT-GKPIYFAGV------SEKPEGLEPF 194
Query: 341 TSDEKVKAIL 350
+ IL
Sbjct: 195 YPERLAGRIL 204
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 28.3 bits (62), Expect = 1.6
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRG 84
+ + K GI VP+ D+++ P ++VK GG+G
Sbjct: 7 KWLKKAGIRVPE--VYEDPDDIE------KP----VIVKPHGAKGGKG 42
>d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide
transformylase PurT, C-domain {Escherichia coli [TaxId:
562]}
Length = 74
Score = 25.9 bits (57), Expect = 2.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 375 ALKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKA 419
A+ + +RL G G R L G+ L TAE + DA E+A A
Sbjct: 25 AVGADLQIRLFGKPEIDGSRRL---GVALATAESVVDAIERAKHA 66
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 27.8 bits (61), Expect = 2.3
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRG 84
+L+ + G+ VPK +++ ++VK GGRG
Sbjct: 7 KLLREAGLRVPKKYESP--EDID------GT----VIVKFPGARGGRG 42
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 27.8 bits (60), Expect = 2.3
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVK 75
+ GI P + D+ A +P + VK
Sbjct: 7 IVAKNAGIATPAFWVINK-DDRPVAATFTYP----VFVK 40
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 364
Score = 27.4 bits (60), Expect = 3.4
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 56 DEVKKAIQDAFPDHKELVVKS-QILAGGRGLGTFKSGLKGGVHIV 99
+ +Q FPD K + V + +++ GG G +H +
Sbjct: 324 RLALEQVQTMFPDKKIVGVNTVEVVYGG-----------GNIHXI 357
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
{Chlorobium tepidum [TaxId: 1097]}
Length = 353
Score = 27.0 bits (59), Expect = 4.8
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 56 DEVKKAIQDAFPDHKELVVK-SQILAGGRGLGTFKSGLKGGVH 97
+ +Q FP + + + S ++ G G +H
Sbjct: 306 QQAIDILQQCFPKREVVGIDCSDLIWGL-----------GAIH 337
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 26.6 bits (57), Expect = 5.3
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKEL----VVKSQILAGGR 83
L G+ V +A+ + K + L +VK
Sbjct: 6 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSV 56
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus
mutans [TaxId: 1309]}
Length = 369
Score = 26.6 bits (58), Expect = 5.6
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 12/43 (27%)
Query: 56 DEVKKAIQDAFPDHKELVVKSQ-ILAGGRGLGTFKSGLKGGVH 97
K+ +Q+ FPD K + V+++ I GG G +H
Sbjct: 328 QLAKQQVQEMFPDRKVVGVRTEEIAYGG-----------GNIH 359
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas
caviae [TaxId: 648]}
Length = 132
Score = 25.1 bits (54), Expect = 9.7
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 7/121 (5%)
Query: 268 RDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN 327
+ + AA D N + LD + M + L G L G+
Sbjct: 14 KRFGAAEVAAFAALSEDFNPLHLDPAFAATTAFERPIVHGMLLASLFSGLLGQQLPGKGS 73
Query: 328 ASEGQVVEAFKILTSDEKVKAIL----VNIFGGIMKCDVIASGIVNAAKQVALKVPVVVR 383
GQ + + ++V A + + I I +A+ VV+
Sbjct: 74 IYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTR---IFTQGGALAVTGEAVVK 130
Query: 384 L 384
L
Sbjct: 131 L 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,510,164
Number of extensions: 73129
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 29
Length of query: 422
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,199,356
Effective search space: 400584904
Effective search space used: 400584904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)