Query 014589
Match_columns 422
No_of_seqs 114 out of 131
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxa_A CGMP-dependent protein 92.2 0.14 4.7E-06 40.3 4.1 45 106-150 9-53 (67)
2 3nmd_A CGMP dependent protein 90.8 0.3 1E-05 38.8 4.8 31 118-148 36-66 (72)
3 1t6f_A Geminin; coiled-coil, c 83.3 1.4 4.9E-05 30.5 4.0 26 124-149 9-34 (37)
4 3a6m_A Protein GRPE, HSP-70 co 82.4 1.8 6.3E-05 39.4 5.7 55 360-420 116-171 (177)
5 1dkg_A Nucleotide exchange fac 80.6 2.3 7.8E-05 39.4 5.7 56 359-417 138-194 (197)
6 3nmd_A CGMP dependent protein 78.2 3.9 0.00013 32.5 5.5 45 117-161 21-65 (72)
7 3a7o_A Autophagy protein 16; c 72.7 6.3 0.00022 31.2 5.3 24 123-146 19-42 (75)
8 2no2_A HIP-I, huntingtin-inter 70.8 13 0.00043 31.3 7.2 37 124-160 56-92 (107)
9 3hnw_A Uncharacterized protein 67.2 53 0.0018 28.5 10.7 23 137-159 111-133 (138)
10 1m1j_C Fibrinogen gamma chain; 66.9 10 0.00035 38.9 6.9 43 106-148 89-131 (409)
11 3hnw_A Uncharacterized protein 66.7 16 0.00055 31.9 7.3 38 123-160 90-127 (138)
12 1lwu_C Fibrinogen gamma chain; 64.2 11 0.00036 37.6 6.3 50 104-153 8-57 (323)
13 3a7p_A Autophagy protein 16; c 63.4 21 0.00072 32.0 7.4 56 106-161 66-121 (152)
14 3efg_A Protein SLYX homolog; x 62.9 15 0.00053 29.1 5.9 55 101-155 7-61 (78)
15 4fla_A Regulation of nuclear P 61.6 58 0.002 28.9 10.0 57 104-160 89-145 (152)
16 4ani_A Protein GRPE; chaperone 61.6 3.5 0.00012 38.8 2.2 48 367-416 164-212 (213)
17 3oja_B Anopheles plasmodium-re 61.5 1.1E+02 0.0038 31.2 13.7 40 122-161 544-583 (597)
18 3oja_B Anopheles plasmodium-re 58.2 64 0.0022 33.0 11.2 47 104-150 505-551 (597)
19 3swk_A Vimentin; cytoskeleton, 57.8 20 0.0007 28.8 5.8 55 103-160 16-73 (86)
20 2yy0_A C-MYC-binding protein; 57.4 9.8 0.00034 28.2 3.6 24 138-161 28-51 (53)
21 1l8d_A DNA double-strand break 56.2 65 0.0022 26.1 8.9 71 77-160 31-102 (112)
22 2v4h_A NF-kappa-B essential mo 55.9 67 0.0023 27.3 8.9 75 68-156 33-110 (110)
23 1m1j_B Fibrinogen beta chain; 54.5 39 0.0013 35.1 8.8 53 109-161 136-193 (464)
24 3na7_A HP0958; flagellar bioge 53.4 1.4E+02 0.0049 27.7 12.6 24 36-59 31-54 (256)
25 2xdj_A Uncharacterized protein 53.4 47 0.0016 26.7 7.3 38 124-161 22-59 (83)
26 3ghg_C Fibrinogen gamma chain; 52.6 20 0.00068 36.8 6.1 69 83-151 62-134 (411)
27 1zxa_A CGMP-dependent protein 52.0 9.9 0.00034 29.7 2.9 39 123-161 12-50 (67)
28 2eqb_B RAB guanine nucleotide 51.1 43 0.0015 27.9 6.8 61 124-198 14-74 (97)
29 3twe_A Alpha4H; unknown functi 49.3 17 0.00058 23.1 3.1 24 138-161 3-26 (27)
30 3a7o_A Autophagy protein 16; c 48.7 74 0.0025 25.2 7.4 60 102-161 12-71 (75)
31 3ol1_A Vimentin; structural ge 47.6 57 0.002 27.5 7.3 53 104-159 37-92 (119)
32 4h22_A Leucine-rich repeat fli 47.4 69 0.0024 26.9 7.6 80 80-163 2-85 (103)
33 1wt6_A Myotonin-protein kinase 47.1 50 0.0017 26.7 6.4 15 104-118 17-31 (81)
34 4emc_A Monopolin complex subun 46.4 16 0.00056 33.8 3.9 36 124-159 29-64 (190)
35 3s4r_A Vimentin; alpha-helix, 44.7 68 0.0023 26.0 7.1 21 136-156 56-76 (93)
36 1m1j_C Fibrinogen gamma chain; 44.6 95 0.0032 31.7 9.7 35 125-159 94-128 (409)
37 2ocy_A RAB guanine nucleotide 43.3 80 0.0027 28.2 7.8 75 109-197 28-105 (154)
38 4dnd_A Syntaxin-10, SYN10; str 43.2 1.4E+02 0.0046 25.7 9.1 104 49-159 15-128 (130)
39 3e21_A HFAF1, FAS-associated f 41.8 14 0.00048 26.6 2.2 20 207-226 25-44 (45)
40 3qh9_A Liprin-beta-2; coiled-c 41.1 52 0.0018 26.6 5.6 22 137-158 55-76 (81)
41 1wt6_A Myotonin-protein kinase 41.0 44 0.0015 27.0 5.2 17 115-131 45-61 (81)
42 3ol1_A Vimentin; structural ge 40.3 97 0.0033 26.0 7.6 57 103-159 15-71 (119)
43 1gmj_A ATPase inhibitor; coile 40.0 54 0.0018 26.6 5.6 35 123-157 45-79 (84)
44 3gpv_A Transcriptional regulat 39.8 91 0.0031 26.8 7.6 40 121-160 94-133 (148)
45 2dfs_A Myosin-5A; myosin-V, in 39.5 2.1E+02 0.0072 32.6 12.4 46 40-90 956-1001(1080)
46 1wlq_A Geminin; coiled-coil; 2 37.6 53 0.0018 26.6 5.2 27 124-150 40-66 (83)
47 2k48_A Nucleoprotein; viral pr 36.3 1.1E+02 0.0038 25.8 7.1 50 106-155 33-101 (107)
48 2v71_A Nuclear distribution pr 36.1 95 0.0033 28.6 7.4 38 123-160 89-126 (189)
49 2yy0_A C-MYC-binding protein; 36.0 36 0.0012 25.1 3.7 29 125-153 22-50 (53)
50 4fla_A Regulation of nuclear P 35.7 89 0.003 27.6 6.9 54 103-159 70-123 (152)
51 1kd8_A GABH AIV, GCN4 acid bas 35.7 50 0.0017 22.8 4.0 32 118-149 4-35 (36)
52 1gd2_E Transcription factor PA 35.7 57 0.0019 25.4 5.0 39 117-155 31-69 (70)
53 2w83_C C-JUN-amino-terminal ki 35.5 1E+02 0.0035 24.6 6.4 56 106-161 11-69 (77)
54 3a7p_A Autophagy protein 16; c 35.0 2.2E+02 0.0074 25.4 9.2 49 106-161 87-135 (152)
55 1i84_S Smooth muscle myosin he 34.8 59 0.002 37.1 7.0 24 127-150 946-969 (1184)
56 3m91_A Proteasome-associated A 34.7 96 0.0033 22.8 5.8 42 107-148 8-49 (51)
57 3hho_A CO-chaperone protein HS 34.0 2.4E+02 0.0084 24.8 11.0 17 46-62 20-36 (174)
58 3ajw_A Flagellar FLIJ protein; 33.9 2E+02 0.0069 23.8 11.3 79 74-156 37-115 (150)
59 3na7_A HP0958; flagellar bioge 33.4 99 0.0034 28.9 7.3 55 107-161 31-85 (256)
60 2v66_B Nuclear distribution pr 33.3 1.4E+02 0.0047 25.3 7.4 58 103-160 12-73 (111)
61 3nr7_A DNA-binding protein H-N 33.3 1.4E+02 0.0047 24.1 7.1 44 118-161 27-70 (86)
62 1kd8_B GABH BLL, GCN4 acid bas 33.3 69 0.0024 22.1 4.4 31 118-148 4-34 (36)
63 4etp_A Kinesin-like protein KA 32.6 57 0.0019 32.9 5.8 52 103-161 5-56 (403)
64 2oa5_A Hypothetical protein BQ 32.6 1.5E+02 0.0053 25.1 7.4 62 135-210 7-68 (110)
65 1ic2_A Tropomyosin alpha chain 32.6 1.5E+02 0.0051 23.1 7.1 36 125-160 30-65 (81)
66 2e7s_A RAB guanine nucleotide 32.0 61 0.0021 28.4 5.1 81 104-198 11-94 (135)
67 1ykh_A RNA polymerase II media 31.8 50 0.0017 27.9 4.4 33 119-151 73-105 (108)
68 1nkp_B MAX protein, MYC proto- 31.4 44 0.0015 26.1 3.8 32 124-155 49-80 (83)
69 3s4r_A Vimentin; alpha-helix, 31.4 1.1E+02 0.0036 24.9 6.2 18 120-137 54-71 (93)
70 2akf_A Coronin-1A; coiled coil 31.1 82 0.0028 20.9 4.3 12 105-116 3-14 (32)
71 1fzc_C Fibrin; blood coagulati 31.1 25 0.00086 34.8 2.8 44 110-153 6-49 (319)
72 1t2k_D Cyclic-AMP-dependent tr 30.7 87 0.003 23.1 5.2 25 124-148 31-55 (61)
73 2zqm_A Prefoldin beta subunit 30.6 54 0.0018 26.6 4.4 41 121-161 69-109 (117)
74 2dfs_A Myosin-5A; myosin-V, in 30.5 79 0.0027 36.0 7.0 36 126-161 981-1016(1080)
75 1ci6_A Transcription factor AT 30.0 1E+02 0.0036 23.1 5.5 36 110-145 25-60 (63)
76 3vem_A Helicase protein MOM1; 29.3 1.1E+02 0.0036 26.3 6.0 73 60-145 29-102 (115)
77 2w6b_A RHO guanine nucleotide 27.7 1.2E+02 0.0042 22.7 5.3 36 126-161 14-49 (56)
78 1gd2_E Transcription factor PA 27.7 1.2E+02 0.004 23.6 5.6 39 108-146 29-67 (70)
79 3u06_A Protein claret segregat 27.5 82 0.0028 31.9 6.0 51 104-161 6-56 (412)
80 3swk_A Vimentin; cytoskeleton, 27.4 97 0.0033 24.7 5.2 51 110-160 2-52 (86)
81 3u1c_A Tropomyosin alpha-1 cha 27.4 1.9E+02 0.0064 23.6 7.1 37 124-160 32-68 (101)
82 3gp4_A Transcriptional regulat 26.4 3E+02 0.01 23.4 8.8 29 125-153 84-112 (142)
83 3vkg_A Dynein heavy chain, cyt 26.2 2.7E+02 0.0094 35.7 11.1 77 80-160 1990-2066(3245)
84 3oja_A Leucine-rich immune mol 26.1 1.1E+02 0.0038 30.6 6.6 49 113-161 412-460 (487)
85 1j1d_C Troponin I, TNI; THIN f 25.5 3.3E+02 0.011 23.6 9.6 75 70-150 26-107 (133)
86 2ic6_A Nucleocapsid protein; h 25.5 1.5E+02 0.0052 23.7 5.9 24 132-155 48-71 (78)
87 3vmx_A Voltage-gated hydrogen 25.4 1.3E+02 0.0045 22.0 5.0 21 125-145 21-41 (48)
88 2lw1_A ABC transporter ATP-bin 25.2 2.4E+02 0.008 22.2 7.2 52 107-158 21-78 (89)
89 1a93_B MAX protein, coiled coi 24.9 72 0.0025 21.8 3.3 25 137-161 8-32 (34)
90 3u59_A Tropomyosin beta chain; 24.8 2.3E+02 0.0079 22.8 7.2 51 109-159 45-95 (101)
91 2l5g_B Putative uncharacterize 24.6 85 0.0029 22.4 3.8 31 124-154 11-41 (42)
92 1uii_A Geminin; human, DNA rep 24.5 1.5E+02 0.005 24.0 5.7 28 124-151 48-75 (83)
93 1q08_A Zn(II)-responsive regul 24.3 1.6E+02 0.0054 22.8 6.0 27 123-149 40-66 (99)
94 3mq7_A Bone marrow stromal ant 24.2 3.3E+02 0.011 23.3 8.1 86 59-157 8-99 (121)
95 2w6a_A ARF GTPase-activating p 24.1 2E+02 0.0067 22.0 6.0 49 108-156 13-61 (63)
96 3m9b_A Proteasome-associated A 23.9 44 0.0015 32.2 2.9 24 110-133 56-79 (251)
97 1fxk_A Prefoldin; archaeal pro 23.6 1E+02 0.0034 24.5 4.7 37 124-160 67-103 (107)
98 2q6q_A Spindle POLE BODY compo 23.3 95 0.0033 24.4 4.2 37 125-161 6-45 (74)
99 1j1e_C Troponin I, TNI; THIN f 23.1 3.7E+02 0.013 24.5 8.8 75 69-150 25-107 (180)
100 3u1c_A Tropomyosin alpha-1 cha 22.9 2.7E+02 0.0091 22.6 7.2 53 107-159 43-95 (101)
101 2zxx_A Geminin; coiled-coil, c 22.8 2.7E+02 0.0093 22.2 6.9 21 124-144 36-56 (79)
102 2efk_A CDC42-interacting prote 22.5 2.2E+02 0.0075 26.2 7.5 116 39-159 26-153 (301)
103 1lwu_C Fibrinogen gamma chain; 22.5 1.6E+02 0.0054 29.1 6.8 39 120-158 17-55 (323)
104 2fxo_A Myosin heavy chain, car 22.2 1.8E+02 0.006 24.6 6.2 44 106-149 81-124 (129)
105 2jee_A YIIU; FTSZ, septum, coi 22.1 2.7E+02 0.0093 22.3 6.8 51 104-157 9-62 (81)
106 3bas_A Myosin heavy chain, str 22.1 77 0.0026 25.3 3.7 34 128-161 13-46 (89)
107 4fi5_A Nucleoprotein; structur 22.0 2E+02 0.007 24.4 6.3 54 110-163 24-96 (113)
108 2oqq_A Transcription factor HY 21.9 78 0.0027 22.6 3.1 15 145-159 12-26 (42)
109 2l2l_A Transcriptional repress 21.8 68 0.0023 22.8 2.8 26 137-163 9-34 (43)
110 3lay_A Zinc resistance-associa 21.7 2.3E+02 0.0078 25.5 7.1 16 77-92 71-86 (175)
111 1x8y_A Lamin A/C; structural p 21.3 2.5E+02 0.0086 22.2 6.6 37 106-145 15-51 (86)
112 4ghu_A TNF receptor-associated 21.2 90 0.0031 28.1 4.4 29 121-149 6-34 (198)
113 3iv1_A Tumor susceptibility ge 21.0 2.9E+02 0.01 22.0 6.8 31 127-157 44-74 (78)
114 3tnu_B Keratin, type II cytosk 21.0 62 0.0021 27.4 3.1 13 147-159 54-66 (129)
115 2dgc_A Protein (GCN4); basic d 20.7 95 0.0032 23.4 3.7 23 121-143 36-58 (63)
116 4gkw_A Spindle assembly abnorm 20.7 2.9E+02 0.01 24.3 7.3 56 106-161 23-85 (167)
117 3ghg_A Fibrinogen alpha chain; 20.6 2.8E+02 0.0095 29.5 8.3 30 31-60 47-80 (562)
118 2xv5_A Lamin-A/C; structural p 20.5 2.2E+02 0.0075 22.2 5.9 27 106-132 3-29 (74)
119 2elu_A Zinc finger protein 406 20.2 8.4 0.00029 26.3 -2.0 11 296-306 12-22 (37)
120 3tnu_A Keratin, type I cytoske 20.1 62 0.0021 27.5 2.9 15 145-159 54-68 (131)
No 1
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=92.23 E-value=0.14 Score=40.26 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 014589 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
+..-.++.+..++.-+..++.||.+++.||.||.+||.+|+...+
T Consensus 9 ~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 9 TSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788888888999999999999999999999985443
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.83 E-value=0.3 Score=38.82 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014589 118 KTYEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 118 ~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
+.-+..++.|+.+++.||++|..|+.+|+..
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344447777778888888888887777644
No 3
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=83.27 E-value=1.4 Score=30.49 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=21.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHH
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDAN 149 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~ 149 (422)
.++|..+|..||.||..||++=.++.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 47888899999999999998766553
No 4
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=82.42 E-value=1.8 Score=39.44 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=41.1
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeeccCC
Q 014589 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSGVKV 420 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~~~~ 420 (422)
+..+.. .|..|||.+.|-|.... . .+..|.-.+-+|++++++||+ ++|-++....
T Consensus 116 v~~i~~-~Ge~FDP~~HeAv~~~~---~--~~gtVv~v~qkGY~l~dRvLRpA~V~V~~~~~ 171 (177)
T 3a6m_A 116 VEEVPG-EGEAFDPRYHEAVGLLP---G--EPGKVAKVFQRGFRMGEALVRPARVAVGEEKR 171 (177)
T ss_dssp CEECCC-TTSBCCTTTEEEEEEEE---S--STTBEEEEEECCEEETTEEEECEEEEEEECCC
T ss_pred CEEeCC-CCCCCCHHHhhhhhccc---C--CcCeEEEEeecCeeeCCEEecCeEEEEeCCCC
Confidence 344443 59999999999886432 1 456788899999999999998 5887776443
No 5
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=80.58 E-value=2.3 Score=39.37 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=40.9
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeec
Q 014589 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSG 417 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~ 417 (422)
.+..+.. .|..|||.+.|-|..... + +..+..|.-.+-+|++++++||+ ++|-++.
T Consensus 138 Gv~~i~~-~G~~FDP~~HeAv~~~~~-~-~~~~~tVv~v~qkGY~l~dRvLRpA~V~V~~ 194 (197)
T 1dkg_A 138 GVEVIAE-TNVPLDPNVHQAIAMVES-D-DVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_dssp TEEEECC-CSSBCCTTSEEEEEEEEC-S-SSCTTBEEEEEECEEEETTEEEECEEEEEEE
T ss_pred CCEEeCC-CCCCCCHHHhheeeeecC-C-CCCcCeEEEEeeCCeeeCCEEecceEEEecC
Confidence 3444543 599999999998864321 2 22456788899999999999998 5777665
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=78.23 E-value=3.9 Score=32.45 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 117 LKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 117 l~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
++.++.++++--.||+.||.-|..|...|++.+.....|...|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555578888889999999999999999999988888877754
No 7
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=72.72 E-value=6.3 Score=31.22 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccchHHHHHHHHHH
Q 014589 123 MVKKFQSEIQNKDSEIHQLQQHIE 146 (422)
Q Consensus 123 ~~~kL~~e~~~kDsEi~~Lr~~L~ 146 (422)
++..|++++..||.||..|++.+.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776654
No 8
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=70.82 E-value=13 Score=31.31 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=33.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+..|+.+|..|+.|+..|+..|+.....+..+..++.
T Consensus 56 le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~ 92 (107)
T 2no2_A 56 LESLKQELATSQRELQVLQGSLETSAQSEANWAAEFA 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998888887764
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.17 E-value=53 Score=28.55 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 014589 137 EIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 137 Ei~~Lr~~L~e~~~~n~~Lek~l 159 (422)
++..|++++.++...+.+||..+
T Consensus 111 e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 10
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.88 E-value=10 Score=38.86 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014589 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
|..++.+.+.++...+..++.|+..+...++.|..|+.++.++
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455555555566666666666666655555555555544444
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.70 E-value=16 Score=31.93 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=19.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 123 MVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 123 ~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
-+..|+.++...+-++..+++++.++...+..|++++.
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555543
No 12
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=64.21 E-value=11 Score=37.56 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 014589 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRV 153 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~ 153 (422)
+-|..||.+.+.++...+..++.|+..++.-++.|..|+.+|.++...+.
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44777888888888888888888888887777777777777766655443
No 13
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.42 E-value=21 Score=31.97 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
....|...++-+...+.-++.|+.+++.|...+..|+.++..++..+..+|++++.
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666677777777777776777777776666666666666543
No 14
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=62.86 E-value=15 Score=29.11 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=39.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014589 101 PQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 101 p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
.....+.+.|.+.+..+.=-|-+++.|-..+-...-+|+.|+.+|..+..+...+
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456688889998888888888899998888887777777777776555444333
No 15
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=61.61 E-value=58 Score=28.86 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.+|.+|+.+...|++..+....-.+.++....-...+-|.+++.+..-+++|...+.
T Consensus 89 ~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 89 GRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 447777777777777777666666666666666677777777777777777776654
No 16
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=61.61 E-value=3.5 Score=38.76 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=36.0
Q ss_pred CCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEee
Q 014589 367 KGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLS 416 (422)
Q Consensus 367 rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs 416 (422)
.|..|||.+.|-|.... +.+..+..|.-.+-+|++++++||+ ++|-++
T Consensus 164 ~Ge~FDP~~HeAv~~v~--~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va 212 (213)
T 4ani_A 164 VGKPFDPYLHQAVMQAE--AEGYEPNTVVEELQKGYKLKDRVLRPAMVKVS 212 (213)
T ss_dssp SSSCCCTTTEEEEEEEC--CSSSCSSSEEEEEECCCEETTSCCSCEEEEEE
T ss_pred CCCCCCHHHceeeeeec--CCCCCCCcEEEEEeCCeEECCEEeeceEEEeC
Confidence 49999999999986532 1223456788899999999999986 556543
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.54 E-value=1.1e+02 Score=31.18 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 122 VMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 122 ~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.-..+++.+++.+...+.+|++++..+..+.+.|++++..
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555555666666666666666666666666666543
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.19 E-value=64 Score=32.97 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 014589 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
..+..+++..+...+..+...++++.+++.+..+...++++.++++.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 44555555555555555555555555554444444433333333333
No 19
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=57.82 E-value=20 Score=28.78 Aligned_cols=55 Identities=18% Similarity=0.401 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 103 DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDS---EIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDs---Ei~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.+.+..|+...+..+.+| -.|.+.|+..|.+ +|..||+-++++.-....||.++.
T Consensus 16 ~~~l~~e~dn~~~~~edf---k~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRL---REKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455777777766665444 4677778766655 899999999999999999998864
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.41 E-value=9.8 Score=28.21 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 138 IHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 138 i~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
...||.++++|...+.+|..+|.+
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666666666666553
No 21
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.24 E-value=65 Score=26.08 Aligned_cols=71 Identities=13% Similarity=0.303 Sum_probs=32.1
Q ss_pred HHhhhhHHHHHHHhh-CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014589 77 SELKNLSELKHFYRE-NNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 77 seL~~ls~LK~~y~~-~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
+++..+...-..+.. ..+=|.|.+|....-. ..++ .+.+.++..-..+|..|+.++.++......|
T Consensus 31 ~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~------~~~i-------~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 31 NKIGDLKTAIEELKKAKGKCPVCGRELTDEHR------EELL-------SKYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHTTCSEECTTTCCEECHHHH------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHH------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 3445777776543111 1132 3333333333444555555555555555555
Q ss_pred hhhhh
Q 014589 156 EKNLK 160 (422)
Q Consensus 156 ek~l~ 160 (422)
+.+++
T Consensus 98 ~~~~~ 102 (112)
T 1l8d_A 98 DMEIK 102 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 22
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=55.86 E-value=67 Score=27.29 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=42.0
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---HHHHHHHH
Q 014589 68 IQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDS---EIHQLQQH 144 (422)
Q Consensus 68 I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDs---Ei~~Lr~~ 144 (422)
+.+|.+++.+--..+.+||+.-.+ +...++.++-|=..-+|--...++|-.+|.- |+..|...
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q--------------~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~q 98 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQ--------------HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHH
Confidence 445555555555555555552222 2222333333333334445666666655543 78888888
Q ss_pred HHHHHHHHHhhh
Q 014589 145 IEDANQKRVKLE 156 (422)
Q Consensus 145 L~e~~~~n~~Le 156 (422)
|+.+.+.+.+|+
T Consensus 99 l~~Lq~q~~~l~ 110 (110)
T 2v4h_A 99 LEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcC
Confidence 888888887763
No 23
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.48 E-value=39 Score=35.13 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 109 EIQEQQSLLKTYEVMVKKFQSEIQNK-----DSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 109 ei~E~q~ll~~ye~~~~kL~~e~~~k-----DsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
++.++...++.|...+++.+..++.. .+.|..|+..|+.+..+..+||..+.+
T Consensus 136 Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 136 QRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777877777777766532 346778888888888888888877654
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=53.41 E-value=1.4e+02 Score=27.73 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh
Q 014589 36 EALVSKIFSNISSLKSAYIELQAA 59 (422)
Q Consensus 36 eali~~lFa~vSslK~AY~qLQ~A 59 (422)
.+-|..+=+.+..++..+..++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~ 54 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEE 54 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666655543
No 25
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=53.40 E-value=47 Score=26.68 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=31.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.-.|+.+++.-..||..||..++++.-....+.++-+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46688888888889999999999999988888877554
No 26
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=52.62 E-value=20 Score=36.82 Aligned_cols=69 Identities=10% Similarity=0.234 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCCCCCCC---Cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 014589 83 SELKHFYRENNPKPACIS---PQ-DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQK 151 (422)
Q Consensus 83 s~LK~~y~~~~~~~~~~~---p~-~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~ 151 (422)
..||..|...++.....- -+ ..-|..|+...+.++...+..++.||+.+...++.|..|+.++..+...
T Consensus 62 ~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 62 KAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777776654221100 00 1125556666666666667777777777777666666666666554443
No 27
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=51.96 E-value=9.9 Score=29.72 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 123 MVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 123 ~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.+++|.+.+..||.-|.+|...|++-......|...|.+
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999888776
No 28
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.11 E-value=43 Score=27.86 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=45.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAAYKA 198 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A~~s 198 (422)
+..|+.++...|.|+..|+..|.+....+...|+...+-. . -+ ..+|.++|..+=..+..+
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie----~---------El-EeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN----K---------EV-EDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---------HH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---------HH-HHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999998888887765410 0 11 278999999875544444
No 29
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=49.33 E-value=17 Score=23.15 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 138 IHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 138 i~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.++|-.+|++++....+|.|+|+.
T Consensus 3 adelykeledlqerlrklrkklrs 26 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456777888888888888888864
No 30
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=48.74 E-value=74 Score=25.17 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 102 QDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 102 ~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
..+.+..-+.-.|+-|+.-+--+.+|+..+.-|--...+|..+|-.++-.|.-|.+||..
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 345566666667777777788889999998887778889999999999999999999853
No 31
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.63 E-value=57 Score=27.47 Aligned_cols=53 Identities=19% Similarity=0.425 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKD---SEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kD---sEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
+.+..++...+..+.+|- .|.+.|+..|. ++|..||+.++++.-....||.++
T Consensus 37 a~l~leldn~~~~~edfk---~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~i 92 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLR---EKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKV 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 345555555554444432 33444443332 366677777777666666666554
No 32
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=47.42 E-value=69 Score=26.92 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=51.2
Q ss_pred hhhHHHHHHHhhCCCCCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014589 80 KNLSELKHFYRENNPKPACISP----QDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 80 ~~ls~LK~~y~~~~~~~~~~~p----~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
.+|+++...|++-=- ++. .-+.+.-+|+=..-.|.+.+...-.|+++.+.|-.++..+|.....+......|
T Consensus 2 dsL~EvEEKyrKAMV----snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 2 DSLAEVEEKYKKAMV----SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp ------CCTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667677766400 000 122344445544445555555678888899999999999999999999999999
Q ss_pred hhhhhhcC
Q 014589 156 EKNLKLRG 163 (422)
Q Consensus 156 ek~l~~~~ 163 (422)
...|+++.
T Consensus 78 k~~L~qRD 85 (103)
T 4h22_A 78 KEALKQRE 85 (103)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 99998863
No 33
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=47.15 E-value=50 Score=26.68 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHH
Q 014589 104 SRLAAEIQEQQSLLK 118 (422)
Q Consensus 104 ~~l~aei~E~q~ll~ 118 (422)
+.|.+||+-+|++..
T Consensus 17 SALeaEIqAKQ~i~E 31 (81)
T 1wt6_A 17 EALEEEVLTRQSLSR 31 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346667776666643
No 34
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=46.43 E-value=16 Score=33.77 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=27.1
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
...|-.+++.|+.||..|+++|+.+..........+
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 345555888999999999999998887775555444
No 35
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=44.75 E-value=68 Score=26.04 Aligned_cols=21 Identities=14% Similarity=0.555 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 014589 136 SEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 136 sEi~~Lr~~L~e~~~~n~~Le 156 (422)
++|..||.+|+++...+..|+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666665555
No 36
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.57 E-value=95 Score=31.69 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=16.1
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
.+||+-+...+++|..|+..|..+..+...|+.++
T Consensus 94 ~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 94 IRYENTILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444455555555544444444444433
No 37
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.33 E-value=80 Score=28.21 Aligned_cols=75 Identities=24% Similarity=0.416 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCH
Q 014589 109 EIQEQQSLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTP 185 (422)
Q Consensus 109 ei~E~q~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp 185 (422)
++...+.-++.||.. .++|+.+....|.|+..|...|.+....+...|+...+-. . -+ ..+|.
T Consensus 28 el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie----~---------El-EeLTa 93 (154)
T 2ocy_A 28 TIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN----K---------EV-EDLTA 93 (154)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH----H---------HH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---------HH-HHHHH
Confidence 333334444444443 4556667778889999999999999988888887765410 0 11 17899
Q ss_pred HHHHHHHHHHHH
Q 014589 186 DLFTQAVEAAYK 197 (422)
Q Consensus 186 ~~F~~~~~~A~~ 197 (422)
++|..+=..+..
T Consensus 94 sLFeEAN~MVa~ 105 (154)
T 2ocy_A 94 SLFDEANNMVAD 105 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999987444433
No 38
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=43.23 E-value=1.4e+02 Score=25.69 Aligned_cols=104 Identities=12% Similarity=0.167 Sum_probs=50.1
Q ss_pred hHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014589 49 LKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQ 128 (422)
Q Consensus 49 lK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~ 128 (422)
-|.-|++=..+.=||.. ++|+ |-+-|.++..|-+.|.+-...+ ..|....+..-..|.+..+++-+..++.|+
T Consensus 15 ~~~~~~~~ms~~DPF~~----Vk~E-Vq~sl~~l~~l~~~w~~l~~~~--~~~s~~E~~~~~~EL~~~l~sie~dLeDLe 87 (130)
T 4dnd_A 15 TENLYFQSMSLEDPFFV----VRGE-VQKAVNTARGLYQRWCELLQES--AAVGREELDWTTNELRNGLRSIEWDLEDLE 87 (130)
T ss_dssp ------------CCHHH----HHHH-HHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeecCCCCCCcHH----HHHH-HHHHHHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668877778888853 3333 2445666666666665432111 112222233333444447777788888888
Q ss_pred HHHhc------c----chHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 129 SEIQN------K----DSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 129 ~e~~~------k----DsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
.-|.. | +.||.+=|.-+.++......+++.|
T Consensus 88 ~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 88 ETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77752 2 4467776666777777666666655
No 39
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=41.84 E-value=14 Score=26.57 Aligned_cols=20 Identities=35% Similarity=0.768 Sum_probs=15.2
Q ss_pred HHHHHhcCCChHHhhhccCC
Q 014589 207 INMMKAAGWDLDSAANSIEP 226 (422)
Q Consensus 207 i~~M~~agwdl~~a~~~i~~ 226 (422)
...+++++|||..|++..-|
T Consensus 25 ~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 25 ITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHcCCcHHHHHHHHcC
Confidence 35678999999999987644
No 40
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.07 E-value=52 Score=26.56 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 014589 137 EIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 137 Ei~~Lr~~L~e~~~~n~~Lek~ 158 (422)
||..|++.|..-+...+.|..+
T Consensus 55 El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 55 EVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555554444444444333
No 41
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=41.03 E-value=44 Score=27.01 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014589 115 SLLKTYEVMVKKFQSEI 131 (422)
Q Consensus 115 ~ll~~ye~~~~kL~~e~ 131 (422)
+-|++++.-.+.|+.++
T Consensus 45 skL~eae~rn~eL~~e~ 61 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHV 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.29 E-value=97 Score=26.02 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=42.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 103 DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
.+.-.++|.+.+..+.+-..--.+|+.|+..-..++..+|.|.++....+..+|.-+
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di 71 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL 71 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455677888888887777766778888888877888888888887777776666443
No 43
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=40.00 E-value=54 Score=26.64 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=24.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Q 014589 123 MVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEK 157 (422)
Q Consensus 123 ~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek 157 (422)
+-++|+.||.....+|..|...|+.......+|++
T Consensus 45 LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 45 LKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666677777777777777777766666666654
No 44
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=39.81 E-value=91 Score=26.77 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 121 EVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+....-|+.+++.-+.+|..|++.++.+......++..+.
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555656665566666666666666666666655443
No 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.45 E-value=2.1e+02 Score=32.59 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=22.2
Q ss_pred HHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHh
Q 014589 40 SKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYR 90 (422)
Q Consensus 40 ~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~ 90 (422)
.++-+.++.||..-.+|+.. ...+..++.-|-+--+.+.+|+..+.
T Consensus 956 ~~~~~e~~~L~~~l~~le~~-----~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMS-----EEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665566554 23333444333333334445544443
No 46
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.60 E-value=53 Score=26.63 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=22.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHH
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
.++|..++..||.||..|++++.++..
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888999999999999988876654
No 47
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.34 E-value=1.1e+02 Score=25.83 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHH---------------hccchHHHHHHHHHHHHHHHHHhh
Q 014589 106 LAAEIQEQQSLLKTYEVM----VKKFQSEI---------------QNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~----~~kL~~e~---------------~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
.-+.|+|.|.-++.-|.. .+||+.+. +.|.+++..|+.||+++.+..+.+
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555554433 46666554 557778889999999888876653
No 48
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.12 E-value=95 Score=28.58 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=24.3
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 123 MVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 123 ~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.+..|+.++..-..+...|+..|.+++..|-.||.+.+
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35666666666666666666666666666666665544
No 49
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.97 E-value=36 Score=25.13 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=14.1
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 014589 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRV 153 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~ 153 (422)
.+|+.|+..-..++..|+++++++.++..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555555555443
No 50
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=35.73 E-value=89 Score=27.63 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 103 DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
+..+..+++|-..+|..| .++|++|++.|..=+.-|+.-.........+.++++
T Consensus 70 ~e~l~~~veeA~~~L~eY---n~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~l 123 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEY---NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKL 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888877777776 678888998877655555444443333444444443
No 51
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.71 E-value=50 Score=22.82 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 014589 118 KTYEVMVKKFQSEIQNKDSEIHQLQQHIEDAN 149 (422)
Q Consensus 118 ~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~ 149 (422)
+..|.-+++|-.+...-..|+.+||.-|.+.+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 34455566666666666667888888777654
No 52
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.71 E-value=57 Score=25.44 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014589 117 LKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 117 l~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
++..|..+..|+.....-..|...||..+..+...+..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444445555444444456666676666666655543
No 53
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.52 E-value=1e+02 Score=24.62 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 106 LAAEIQEQQSLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+..=|.|+..|+.|-.++ -+.|=+.++.--+|-.-|+.+|..+.....+++.|++.
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777787776443 57777777777778888888888888888888888764
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.04 E-value=2.2e+02 Score=25.44 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+..+++|...+ +..|+.|+..-..+...+..++..++..|..|=+|+-.
T Consensus 87 Leeel~eK~K~-------~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 87 LKEVIALKNKN-------TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444 67788888887788888888888888888777766543
No 55
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=34.75 E-value=59 Score=37.10 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=0.0
Q ss_pred HHHHHhccchHHHHHHHHHHHHHH
Q 014589 127 FQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 127 L~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
|+.+++.-+.++..|+.+++++..
T Consensus 946 l~~e~~~le~el~~L~~eleele~ 969 (1184)
T 1i84_S 946 LQAEKKKMQQQMLDLEEQLEEEEA 969 (1184)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444433333
No 56
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.70 E-value=96 Score=22.81 Aligned_cols=42 Identities=10% Similarity=0.278 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014589 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
+..+.+.+.-+.....-..+|...++.-..+|..|++.|+.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666777888888887778888888888765
No 57
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=34.04 E-value=2.4e+02 Score=24.79 Aligned_cols=17 Identities=35% Similarity=0.340 Sum_probs=15.3
Q ss_pred HhhhHHHHHHHHhhcCC
Q 014589 46 ISSLKSAYIELQAAHTP 62 (422)
Q Consensus 46 vSslK~AY~qLQ~Ah~P 62 (422)
...||.||-+||.-+||
T Consensus 20 ~~eIk~aYr~l~~~~HP 36 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHP 36 (174)
T ss_dssp HHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHCc
Confidence 45699999999999998
No 58
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=33.95 E-value=2e+02 Score=23.80 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=56.0
Q ss_pred HHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 014589 74 LVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRV 153 (422)
Q Consensus 74 ~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~ 153 (422)
..-..|..|...+..|...-.... ....-..++...++.+...+..+...+.++..-..++...+..|.+.....+
T Consensus 37 ~~~~~L~~L~~~~~~y~~~~~~~~----~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 112 (150)
T 3ajw_A 37 QAEEQLKMLIDYQNEYRSNLNTDM----GNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQ 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--C----CSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888887522111 1112245677778888888888888888888888888888888888887777
Q ss_pred hhh
Q 014589 154 KLE 156 (422)
Q Consensus 154 ~Le 156 (422)
.+|
T Consensus 113 ~~e 115 (150)
T 3ajw_A 113 AWQ 115 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 59
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.35 E-value=99 Score=28.88 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
-+++++.+.-+......+.+++.++..-+.++..+...++++..+..+.++++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555556666666666666666666666666666666666654
No 60
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.34 E-value=1.4e+02 Score=25.31 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHH----HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 103 DSRLAAEIQEQQSLLKTYEV----MVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~----~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
...|..|+++-+..++.-.. .+..||.++..-..+=..|+..|.+++..|-.||.+-+
T Consensus 12 ~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
No 61
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=33.30 E-value=1.4e+02 Score=24.09 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 118 KTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 118 ~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.+.+.+.+||..=+..|..|....++...+-..+..++-+.|.+
T Consensus 27 e~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 27 ETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777777666666666666666666666666666665
No 62
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.29 E-value=69 Score=22.11 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014589 118 KTYEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 118 ~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
+..|.-+++|-.+...-..|+.+||..|.++
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 3345555555555555566777777777654
No 63
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.63 E-value=57 Score=32.93 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 103 DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
...+..++++.+.- .++|+.+++.-..++..|+++|.+.+..+++|...+..
T Consensus 5 ~~~~~~~~~~l~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 5 IAALKEKIAALKEK-------IAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665555 45666666665666667777777777777766655433
No 64
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=32.57 E-value=1.5e+02 Score=25.09 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014589 135 DSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAAYKAIHDFSKPLINMM 210 (422)
Q Consensus 135 DsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A~~si~~FaK~Li~~M 210 (422)
|.-+.+|-.+|..|...|+.|.++|+++|-.. +-+..+||..=...+..+ +..|++.-...+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~-----------p~d~~LTp~qKea~I~s~---~~~Lss~A~~KI 68 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVS-----------SDDSILTAAKRESIIVSS---SRALGAVAMRKI 68 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC--------------------CCBCCHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----------CCCccCCHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44556677778889999999999997633111 111368887766666554 344555444444
No 65
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.55 E-value=1.5e+02 Score=23.08 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+..+......+.||..|..++.-++......+.+|.
T Consensus 30 ~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 30 KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455566666666555555555554443
No 66
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.01 E-value=61 Score=28.43 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCC
Q 014589 104 SRLAAEIQEQQSLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFP 180 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s 180 (422)
.....+|..++..++.|+.. .++|+.++...|.|+..|...|.+....+...|+...+-. . -+
T Consensus 11 ~~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie-----~--------El- 76 (135)
T 2e7s_A 11 NKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-----K--------EV- 76 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHH-----H--------HH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--------HH-
Confidence 34556677777788888875 5667778888999999999999998888888887655410 0 11
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 014589 181 VDLTPDLFTQAVEAAYKA 198 (422)
Q Consensus 181 ~~~sp~~F~~~~~~A~~s 198 (422)
..+|.++|..+=..+..+
T Consensus 77 E~LTasLFeEAN~MVa~a 94 (135)
T 2e7s_A 77 EDLTASLFDEANNLVADA 94 (135)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 278999999875554444
No 67
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=31.77 E-value=50 Score=27.90 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 014589 119 TYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQK 151 (422)
Q Consensus 119 ~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~ 151 (422)
.+|++..-|+.|++.|..||..+++..+++...
T Consensus 73 ARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~ 105 (108)
T 1ykh_A 73 SRESLIMLLEEQLEYKRGEIREIEQVCKQVHDK 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999988877654
No 68
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.41 E-value=44 Score=26.09 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=17.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
++.|+.+++.-..|+..|+.+...|......|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666655555555555555554444433
No 69
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=31.37 E-value=1.1e+02 Score=24.85 Aligned_cols=18 Identities=11% Similarity=0.449 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhccchH
Q 014589 120 YEVMVKKFQSEIQNKDSE 137 (422)
Q Consensus 120 ye~~~~kL~~e~~~kDsE 137 (422)
|+..+..|..+|..--.|
T Consensus 54 ye~~i~~Lr~~i~~~~~e 71 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTND 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666543333
No 70
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.11 E-value=82 Score=20.91 Aligned_cols=12 Identities=17% Similarity=0.554 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHH
Q 014589 105 RLAAEIQEQQSL 116 (422)
Q Consensus 105 ~l~aei~E~q~l 116 (422)
+|+.+++..+.+
T Consensus 3 rlee~~r~l~~i 14 (32)
T 2akf_A 3 RLEEDVRNLNAI 14 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 455555554444
No 71
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=31.09 E-value=25 Score=34.81 Aligned_cols=44 Identities=11% Similarity=0.210 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 014589 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRV 153 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~ 153 (422)
|...+..+..++..++.|+..++..+++|..|+.++..++.++.
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344455555666666666656666666666665555443
No 72
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.75 E-value=87 Score=23.12 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=11.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHH
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
++.|+.+...-.++|..|+.++..|
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444454444443
No 73
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.62 E-value=54 Score=26.57 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 121 EVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+.+...|+..++.-+.+|..|..++.++.....++++.|..
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555556666666666666666666655554
No 74
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.52 E-value=79 Score=36.03 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 126 KFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 126 kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+++.++...+.|+..|+++++.+...+..||+++.+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666666666543
No 75
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.97 E-value=1e+02 Score=23.09 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 014589 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHI 145 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L 145 (422)
+++.+.-++..+.-...|+.++..-..|+..|+.-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433334444444444444444444444443
No 76
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=29.30 E-value=1.1e+02 Score=26.28 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred cCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhccchHH
Q 014589 60 HTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQ-EQQSLLKTYEVMVKKFQSEIQNKDSEI 138 (422)
Q Consensus 60 h~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~-E~q~ll~~ye~~~~kL~~e~~~kDsEi 138 (422)
|+|+++|=+ --||.+|....+.-.+.-- -....|-+|++ |+..+-+.|+..+++++++.-.|..++
T Consensus 29 ~~~~~sDPL-------~~ELeRLr~~~d~~~K~HE------~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~l 95 (115)
T 3vem_A 29 PFPVFNDPF-------LHELEKLRRESENSKKTFE------EKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKI 95 (115)
T ss_dssp ----CCSHH-------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchH-------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 014589 139 HQLQQHI 145 (422)
Q Consensus 139 ~~Lr~~L 145 (422)
+.++.+.
T Consensus 96 e~~~~kV 102 (115)
T 3vem_A 96 EKDKNLV 102 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 77
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.69 E-value=1.2e+02 Score=22.72 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=24.6
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 126 KFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 126 kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.|.-|+..-..|...|++.|++..+..+.||+-++.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444446667888898888888888876654
No 78
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.67 E-value=1.2e+02 Score=23.59 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 014589 108 AEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIE 146 (422)
Q Consensus 108 aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~ 146 (422)
+.|.+.+.-+..++.....|..|+..-..+|..|..+|.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555544
No 79
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.54 E-value=82 Score=31.95 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
..|..|+++.+.. .++|+.+++....|+..++++|.+.+..+++|...+-.
T Consensus 6 ~~l~~el~~~~~~-------~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 6 AALSTEVVHLRQR-------TEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777776665 57777777777778888888888888888777766544
No 80
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.44 E-value=97 Score=24.74 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
|++.+.-+..-..--.+|+.|++.-...+..+|.|.++....+..+|.-+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~ 52 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQ 52 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444456778888888888888889998888888887775543
No 81
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.40 E-value=1.9e+02 Score=23.58 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
++.++......+.||..|..++.-++......+.+|.
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555566665555544444444444443
No 82
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.35 E-value=3e+02 Score=23.35 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=11.9
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 014589 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRV 153 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~ 153 (422)
.-|+.++..-+.+|..|...++.+.....
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333
No 83
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.21 E-value=2.7e+02 Score=35.68 Aligned_cols=77 Identities=10% Similarity=0.156 Sum_probs=47.1
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 80 KNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 80 ~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
+.+.+.|...-+. ++.+ -|. .-+.+++++.+.-++.-+..+++.+++++.-+.+|..|+.+++++.+....|+..+
T Consensus 1990 ~ei~~~k~~~e~d-L~~A--~Pa-~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 1990 KEIAVQKVKAYAD-LEKA--EPT-GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHC-C----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-Hhhc--CCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555543 2211 011 22666666666666666666777777888888888888888888777777776554
Q ss_pred h
Q 014589 160 K 160 (422)
Q Consensus 160 ~ 160 (422)
.
T Consensus 2066 ~ 2066 (3245)
T 3vkg_A 2066 S 2066 (3245)
T ss_dssp H
T ss_pred H
Confidence 3
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.08 E-value=1.1e+02 Score=30.60 Aligned_cols=49 Identities=20% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 113 QQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 113 ~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
..+..+.||.+..++|.+......+....+++.+.+...+.++++-+..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 4456677777777777777666666666666666666666666655443
No 85
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=25.54 E-value=3.3e+02 Score=23.62 Aligned_cols=75 Identities=23% Similarity=0.191 Sum_probs=45.9
Q ss_pred HhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccchHHHHHH
Q 014589 70 AADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSE-------IQNKDSEIHQLQ 142 (422)
Q Consensus 70 aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e-------~~~kDsEi~~Lr 142 (422)
.|=+.+-.|-....+=|+.|..-...|...+ ..-.++++ .+.+.|+..+.+|++| +...|-||..|+
T Consensus 26 kA~e~l~kE~e~k~eeKkkiLaER~~pL~id---~ls~~~L~---e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~ 99 (133)
T 1j1d_C 26 IAKQELEREAEERRGEKGRALSTRAQPLELA---GLGFAELQ---DLARQLHARVDKVDEERYDIEAKVTKNITEIADLT 99 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCT---TCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHH
Confidence 3444556677777888888887644332111 11133344 4777777776666655 466677888888
Q ss_pred HHHHHHHH
Q 014589 143 QHIEDANQ 150 (422)
Q Consensus 143 ~~L~e~~~ 150 (422)
.++.++..
T Consensus 100 ~rV~Dl~g 107 (133)
T 1j1d_C 100 QKIFDLRG 107 (133)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHc
Confidence 88877643
No 86
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=25.50 E-value=1.5e+02 Score=23.69 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=18.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHhh
Q 014589 132 QNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 132 ~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
+.|.+++..|+.||.++.+..+.+
T Consensus 48 ~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 48 QSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888999998888776654
No 87
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=25.41 E-value=1.3e+02 Score=21.99 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=10.9
Q ss_pred HHHHHHHhccchHHHHHHHHH
Q 014589 125 KKFQSEIQNKDSEIHQLQQHI 145 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L 145 (422)
..||..-..++-||.+|+.-|
T Consensus 21 ~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 21 QHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHH
Confidence 334444444555666666544
No 88
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.19 E-value=2.4e+02 Score=22.22 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----cch-HHHHHHHHHHHHHHHHHhhhhh
Q 014589 107 AAEIQEQQSLLKTYEVMVKKFQSEIQN-----KDS-EIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~-----kDs-Ei~~Lr~~L~e~~~~n~~Lek~ 158 (422)
..|++.....|...|.-+..|+.++.. .|. .+..|-.+|+++......+..|
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777778888888854 343 4555656665555555444433
No 89
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.87 E-value=72 Score=21.80 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 137 EIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 137 Ei~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
++....+.++++.++|..|+..++.
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3455566777778888888877653
No 90
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.84 E-value=2.3e+02 Score=22.84 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 109 EIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 109 ei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
+|...+.-++..+.-+.+.+..+..-...+..-.....+++.....|.+||
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344434343333333333333333222223333344444444555555554
No 91
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.63 E-value=85 Score=22.39 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
+.+.-+||..-...|..|+.+|.+|+....+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~a~k 41 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEEAAK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 92
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.49 E-value=1.5e+02 Score=24.02 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=22.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHH
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQK 151 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~ 151 (422)
.++|..+|..++.||..||+.++++..-
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888899999998888777553
No 93
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.29 E-value=1.6e+02 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=11.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHH
Q 014589 123 MVKKFQSEIQNKDSEIHQLQQHIEDAN 149 (422)
Q Consensus 123 ~~~kL~~e~~~kDsEi~~Lr~~L~e~~ 149 (422)
+..-|+.+++.-+.+|..|+..++.+.
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444444444443333
No 94
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.16 E-value=3.3e+02 Score=23.34 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=0.0
Q ss_pred hcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHH--HHHHHHHHHHHHHHHHHH----Hh
Q 014589 59 AHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQE--QQSLLKTYEVMVKKFQSE----IQ 132 (422)
Q Consensus 59 Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E--~q~ll~~ye~~~~kL~~e----~~ 132 (422)
||++=--|++++ ..|.+++..|=+.-+.. ++......|.|- =-+-+.|.-+.+++.+++ ++
T Consensus 8 ANSeAC~dGLrA-----q~ECrN~T~lLq~qLTq--------AQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vq 74 (121)
T 3mq7_A 8 ANSEAARDGLRA-----VMEARNVTHLLQQELTE--------AQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE 74 (121)
T ss_dssp ---CHHHHHHHH-----HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHH-----HHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhh
Q 014589 133 NKDSEIHQLQQHIEDANQKRVKLEK 157 (422)
Q Consensus 133 ~kDsEi~~Lr~~L~e~~~~n~~Lek 157 (422)
.-.-||..|+++|.++.....+|.+
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
No 95
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.10 E-value=2e+02 Score=22.03 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014589 108 AEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 108 aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
.|-=|....|.+-|+-+..|=.-...--.|+..|..+|..+.+.|..|.
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4444556667777777766666566666678888888999988888764
No 96
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.92 E-value=44 Score=32.19 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 014589 110 IQEQQSLLKTYEVMVKKFQSEIQN 133 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~ 133 (422)
+++.+.-+....+..++|+.+++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ 79 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKE 79 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444333
No 97
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.60 E-value=1e+02 Score=24.53 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=19.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014589 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
...|+..++.-+.+|..|..++.++.....++++.|.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555554
No 98
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.30 E-value=95 Score=24.40 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHH---Hhhhhhhhh
Q 014589 125 KKFQSEIQNKDSEIHQLQQHIEDANQKR---VKLEKNLKL 161 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n---~~Lek~l~~ 161 (422)
++|...+..|+.||.+|.--.+.+..+. ..|.|+|..
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~ 45 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLED 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 99
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=23.09 E-value=3.7e+02 Score=24.52 Aligned_cols=75 Identities=24% Similarity=0.197 Sum_probs=46.9
Q ss_pred HHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHH-------HhccchHHHH
Q 014589 69 QAADKLVISELKNLSELKHFYRENNPKPACISPQDSR-LAAEIQEQQSLLKTYEVMVKKFQSE-------IQNKDSEIHQ 140 (422)
Q Consensus 69 ~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~-l~aei~E~q~ll~~ye~~~~kL~~e-------~~~kDsEi~~ 140 (422)
+.|=+-+-.|-....+=|+.|..-...|. ..+. -.+++ +.+.+.|+..+..|+.| +...|-||..
T Consensus 25 ~kA~e~L~~E~e~k~eEKkkiLaER~kPL----nid~Lse~~L---~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~d 97 (180)
T 1j1e_C 25 QIAKQELEREAEERRGEKGRALSTRAQPL----ELAGLGFAEL---QDLARQLHARVDKVDEERYDIEAKVTKNITEIAD 97 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCC----CGGGCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCCCCHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHH
Confidence 33445556677777888888887544332 1222 23334 44778887777776666 4556778888
Q ss_pred HHHHHHHHHH
Q 014589 141 LQQHIEDANQ 150 (422)
Q Consensus 141 Lr~~L~e~~~ 150 (422)
|+.++.++..
T Consensus 98 L~~rV~DLrG 107 (180)
T 1j1e_C 98 LTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 8888877643
No 100
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.88 E-value=2.7e+02 Score=22.63 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
..+|...++-+...|.-+.+++..+..-...+..-.....+++..+..|.+|+
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444444444444433222222233333344444555555554
No 101
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.75 E-value=2.7e+02 Score=22.21 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=17.9
Q ss_pred HHHHHHHHhccchHHHHHHHH
Q 014589 124 VKKFQSEIQNKDSEIHQLQQH 144 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~ 144 (422)
.++|-.+|..|+.||..|+++
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999888876
No 102
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=22.53 E-value=2.2e+02 Score=26.19 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhHHHHHH-HHh---hcCCC-----Ch---hhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhH
Q 014589 39 VSKIFSNISSLKSAYIE-LQA---AHTPY-----DP---DKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRL 106 (422)
Q Consensus 39 i~~lFa~vSslK~AY~q-LQ~---Ah~Py-----dp---d~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l 106 (422)
|...|-.=+.|...|++ |+. --.|- ++ -.+..|=..++.|+++++.....+... . .+.....|
T Consensus 26 l~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~~~~~~~t~~~~w~~~l~~~e~~a~~h~~~a~~-L----~~~v~~~l 100 (301)
T 2efk_A 26 YVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQRELVAEN-L----SVRVCLEL 100 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHH
Confidence 44556666677777764 221 11111 11 156667778889999999998877765 1 00112224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014589 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
..=+.++....|.+.....+++.++...-.++...|.+.+.+-....++..+.
T Consensus 101 ~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~ 153 (301)
T 2efk_A 101 TKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTA 153 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677778888888888888777777777777765555444444443
No 103
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.52 E-value=1.6e+02 Score=29.11 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Q 014589 120 YEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 120 ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~ 158 (422)
||..+...+.+|+.-...+..++.+|+++......|+.+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444455444444444444
No 104
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.17 E-value=1.8e+02 Score=24.61 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 014589 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDAN 149 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~ 149 (422)
|...|.+.+.-+...+-....|.++-+.-..++..|+..|++++
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566666665555556666666666554
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.09 E-value=2.7e+02 Score=22.30 Aligned_cols=51 Identities=16% Similarity=0.381 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Q 014589 104 SRLAAEIQEQQSLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEK 157 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek 157 (422)
+-|.+.|+. ++.|...+ +++|+.+...--.+...++..-+.+...|..|..
T Consensus 9 eqLE~KIq~---avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 9 EKLEAKVQQ---AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
No 106
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=22.06 E-value=77 Score=25.34 Aligned_cols=34 Identities=9% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 128 QSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 128 ~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+.++..++.++..|+..|.........|+.+..+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~ 46 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVT 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 107
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.00 E-value=2e+02 Score=24.42 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHH---------------hccchHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 014589 110 IQEQQSLLKTYEVM----VKKFQSEI---------------QNKDSEIHQLQQHIEDANQKRVKLEKNLKLRG 163 (422)
Q Consensus 110 i~E~q~ll~~ye~~----~~kL~~e~---------------~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ 163 (422)
|+|.|.-+..-|.. .+||+.+. +.|.+++..|+.||+++.+..+..-...+.++
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~~ 96 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNLG 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
No 108
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.90 E-value=78 Score=22.57 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhhhh
Q 014589 145 IEDANQKRVKLEKNL 159 (422)
Q Consensus 145 L~e~~~~n~~Lek~l 159 (422)
-.+++.+|++||.|+
T Consensus 12 ~k~le~~naeLEerv 26 (42)
T 2oqq_A 12 VKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445555443
No 109
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=21.82 E-value=68 Score=22.82 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 014589 137 EIHQLQQHIEDANQKRVKLEKNLKLRG 163 (422)
Q Consensus 137 Ei~~Lr~~L~e~~~~n~~Lek~l~~~~ 163 (422)
=|..||++|.-.+.+..-| |+|+++-
T Consensus 9 ~i~~LreeLR~EEaKLvLL-KKlrqSQ 34 (43)
T 2l2l_A 9 MIKQLKEELRLEEAKLVLL-KKLRQSQ 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3445555565444444444 6777754
No 110
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.66 E-value=2.3e+02 Score=25.52 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=9.8
Q ss_pred HHhhhhHHHHHHHhhC
Q 014589 77 SELKNLSELKHFYREN 92 (422)
Q Consensus 77 seL~~ls~LK~~y~~~ 92 (422)
++-..+.+|++.|+..
T Consensus 71 EQq~ql~~I~~e~r~~ 86 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQ 86 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666676666654
No 111
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.26 E-value=2.5e+02 Score=22.15 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 014589 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHI 145 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L 145 (422)
|.+.+.+.+. .|+..++.++..|...++++..+|..+
T Consensus 15 Le~~l~e~E~---~~~~~l~~~q~~i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 15 KEAKLRDLED---SLARERDTSRRLLAEKEREMAEMRARM 51 (86)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555333 344444444444444444444444433
No 112
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.20 E-value=90 Score=28.08 Aligned_cols=29 Identities=7% Similarity=0.174 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 014589 121 EVMVKKFQSEIQNKDSEIHQLQQHIEDAN 149 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~Lr~~L~e~~ 149 (422)
|.-+++|+.++..+|.+|..|++++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 6 ESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456777777777776666666655443
No 113
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.99 E-value=2.9e+02 Score=21.96 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=12.5
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Q 014589 127 FQSEIQNKDSEIHQLQQHIEDANQKRVKLEK 157 (422)
Q Consensus 127 L~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek 157 (422)
|+.=+..-+.|-..|...++-+..++.+|++
T Consensus 44 L~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 44 LEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444443
No 114
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.96 E-value=62 Score=27.38 Aligned_cols=13 Identities=8% Similarity=0.355 Sum_probs=4.9
Q ss_pred HHHHHHHhhhhhh
Q 014589 147 DANQKRVKLEKNL 159 (422)
Q Consensus 147 e~~~~n~~Lek~l 159 (422)
.+...+..||..|
T Consensus 54 ~l~~~~~~LE~~l 66 (129)
T 3tnu_B 54 NVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 3333333444333
No 115
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.73 E-value=95 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhccchHHHHHHH
Q 014589 121 EVMVKKFQSEIQNKDSEIHQLQQ 143 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~Lr~ 143 (422)
+.-+..|+.+...-.++|..|++
T Consensus 36 e~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 36 EDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333334444433
No 116
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=20.71 E-value=2.9e+02 Score=24.29 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014589 106 LAAEIQEQQSLLKTYEVM-------VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~-------~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+-.|++|+|.-|..-+-| +..||...-...-||..||.++.-+.+...+-++-|..
T Consensus 23 ~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 23 LQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 334555555544333333 33344444445569999999998887777666555544
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.61 E-value=2.8e+02 Score=29.48 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=21.5
Q ss_pred ChHHHHHHHHH----HHHHHhhhHHHHHHHHhhc
Q 014589 31 NPEALEALVSK----IFSNISSLKSAYIELQAAH 60 (422)
Q Consensus 31 ~~~~~eali~~----lFa~vSslK~AY~qLQ~Ah 60 (422)
.=|.|..+|.+ |=..|--||..|-+||+.+
T Consensus 47 SGCrLQglLdkqErDltkrINELKnqLEdlsKns 80 (562)
T 3ghg_A 47 SGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNN 80 (562)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhc
Confidence 45666666654 5567788899999998766
No 118
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.51 E-value=2.2e+02 Score=22.22 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014589 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQ 132 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~ 132 (422)
+..|.+..|..+..+|..+.+++.++.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777775555555555444443
No 119
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.22 E-value=8.4 Score=26.32 Aligned_cols=11 Identities=45% Similarity=1.029 Sum_probs=9.2
Q ss_pred hHHHHHHhhhc
Q 014589 296 GKFCRSKYLAV 306 (422)
Q Consensus 296 ~rFC~~Kyl~l 306 (422)
-|||.+||..+
T Consensus 12 crfckkkysdv 22 (37)
T 2elu_A 12 CRFCKKKYSDV 22 (37)
T ss_dssp ETTTTEECSSH
T ss_pred HHHHHHHHHHH
Confidence 47999999876
No 120
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.09 E-value=62 Score=27.48 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhhhh
Q 014589 145 IEDANQKRVKLEKNL 159 (422)
Q Consensus 145 L~e~~~~n~~Lek~l 159 (422)
|+.+...+..||..|
T Consensus 54 l~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 54 LQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH
Confidence 333333344444433
Done!