BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014591
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQK 151
AAE Q+ + ++ + V + Q E++ KDSE +LQ+ +EDA +K
Sbjct: 404 AAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448
>pdb|2GTT|A Chain A, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|B Chain B, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|C Chain C, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|D Chain D, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|E Chain E, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|F Chain F, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|G Chain G, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|H Chain H, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|I Chain I, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|J Chain J, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|K Chain K, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|L Chain L, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|M Chain M, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|N Chain N, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|O Chain O, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|P Chain P, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|Q Chain Q, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|R Chain R, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|S Chain S, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|T Chain T, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|U Chain U, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|V Chain V, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
Length = 450
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 181 VDLTPDLFTQAVEAAYKAIHDFSKPLINMMKAAGWDLDSAANSIEPNVVYAK 232
V L P++ E Y AI D KP I + KA DL+ A S+ + AK
Sbjct: 15 VSLKPEIIVDQHEYKYPAIKDLKKPCITLGKAP--DLNKAYKSVLSGMSAAK 64
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 26/97 (26%)
Query: 21 PQPMEEAMNQNPEA----------LEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQA 70
P P++ A+ PE +EAL+ F++ + ++ + LQ+
Sbjct: 73 PSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL----------- 121
Query: 71 ADKLVISELKNLSELKHFYRENNPKPACISPQDSRLA 107
+ ++ EL +LK F RE P+P+ Q S LA
Sbjct: 122 -PRFILMELMAGGDLKSFLRETRPRPS----QPSSLA 153
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 26/97 (26%)
Query: 21 PQPMEEAMNQNPEA----------LEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQA 70
P P++ A+ PE +EAL+ F++ + ++ + LQ+
Sbjct: 58 PSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL----------- 106
Query: 71 ADKLVISELKNLSELKHFYRENNPKPACISPQDSRLA 107
+ ++ EL +LK F RE P+P+ Q S LA
Sbjct: 107 -PRFILMELMAGGDLKSFLRETRPRPS----QPSSLA 138
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 251 GFQQEDFSVKSENLIVNKESFFHQFLALRE----IDPLDVLGQNPDSNFGKFCRSKYL 304
G ++D K L V KESF QFLA E + + L QNP + + K ++ L
Sbjct: 196 GLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLL 253
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 251 GFQQEDFSVKSENLIVNKESFFHQFLALRE----IDPLDVLGQNPDSNFGKFCRSKYL 304
G ++D K L V KESF QFLA E + + L QNP + + K ++ L
Sbjct: 212 GLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLL 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,009,724
Number of Sequences: 62578
Number of extensions: 475907
Number of successful extensions: 1528
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1520
Number of HSP's gapped (non-prelim): 22
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)