BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014591
         (422 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P02566|MYO4_CAEEL Myosin-4 OS=Caenorhabditis elegans GN=unc-54 PE=4 SV=1
          Length = 1966

 Score = 39.3 bits (90), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 17/174 (9%)

Query: 40   SKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACI 99
            + +F+N+ S K+   + +      +  +  A+        K LSEL     +N  + A +
Sbjct: 897  TSLFTNLESTKTQLSDAEERLAKLEAQQKDAS--------KQLSELNDQLADNEDRTADV 948

Query: 100  SPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159
                 ++ AE++  +  ++  E+ ++K +SE Q+KD +I  LQ  ++  ++   KL K  
Sbjct: 949  QRAKKKIEAEVEALKKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKEK 1008

Query: 160  K---------LRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAAYKAIHDFSK 204
            K         +  L ++E +G+        ++ T D    ++E   +A  D  K
Sbjct: 1009 KHQEEINRKLMEDLQSEEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDK 1062


>sp|Q6WRU0|BST2_CRIGR Bone marrow stromal antigen 2 OS=Cricetulus griseus GN=Bst2 PE=1
           SV=1
          Length = 203

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 48/77 (62%), Gaps = 7/77 (9%)

Query: 99  ISPQDS--RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156
           ++ QDS  +  ++IQE+Q+L++  E  +K+ +++I+ ++++I + + HI++   +  KLE
Sbjct: 97  VTLQDSLEKKVSQIQEKQALIQEQEAQIKEQEAQIKEQEAQIKEQKAHIQEQQVRIQKLE 156

Query: 157 KNL-----KLRGLSTKE 168
             +     KL+ L T E
Sbjct: 157 GEVEEFEQKLKKLRTAE 173


>sp|Q9H8K7|CJ088_HUMAN Uncharacterized protein C10orf88 OS=Homo sapiens GN=C10orf88 PE=1
           SV=2
          Length = 445

 Score = 32.7 bits (73), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 21/109 (19%)

Query: 55  ELQAAHTPYDPDKIQAADKLVISEL----KNL-SELKHFYRENNPKPAC---ISPQDSRL 106
           +L+ A   + P K+     +  SEL    +NL S++ H +  N  K  C   I+    R+
Sbjct: 307 DLKNAMASFLPKKVSDNSNIPNSELLPFLQNLCSQVNHLHVGN--KTECQENITKHGERI 364

Query: 107 AAEIQEQQSLL--------KTYEVMVKKFQSEIQNKDSEIHQLQQHIED 147
                E+QS+         K  E+M KK    I   D  IH+LQ+HI+D
Sbjct: 365 LGVGMEEQSICSYLEKILSKNMELMEKKLMDYI---DQRIHELQEHIDD 410


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,280,260
Number of Sequences: 539616
Number of extensions: 6551645
Number of successful extensions: 22355
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 21769
Number of HSP's gapped (non-prelim): 825
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)