Query 014591
Match_columns 422
No_of_seqs 114 out of 131
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04859 DUF641: Plant protein 100.0 1.4E-46 3E-51 332.5 13.9 130 27-159 2-131 (131)
2 PF01025 GrpE: GrpE; InterPro 90.2 0.38 8.3E-06 43.6 4.2 55 358-415 108-163 (165)
3 PF08614 ATG16: Autophagy prot 88.3 1.2 2.5E-05 42.1 6.1 122 40-161 27-169 (194)
4 PF12329 TMF_DNA_bd: TATA elem 87.8 2.5 5.4E-05 34.5 6.9 59 103-161 14-72 (74)
5 PF08317 Spc7: Spc7 kinetochor 86.6 9 0.0002 39.0 11.8 124 32-161 144-269 (325)
6 PF10205 KLRAQ: Predicted coil 86.0 3.5 7.6E-05 36.0 7.2 56 106-161 10-65 (102)
7 COG0497 RecN ATPase involved i 85.1 9.7 0.00021 42.0 11.7 89 46-145 268-365 (557)
8 COG0576 GrpE Molecular chapero 83.4 1.4 3E-05 42.1 4.0 50 359-411 135-184 (193)
9 PRK09039 hypothetical protein; 82.4 25 0.00054 36.3 12.9 65 80-151 123-187 (343)
10 PRK10869 recombination and rep 81.4 17 0.00036 39.9 11.8 12 79-90 305-316 (553)
11 PF15290 Syntaphilin: Golgi-lo 81.4 12 0.00026 38.1 9.7 80 106-213 59-139 (305)
12 PF08317 Spc7: Spc7 kinetochor 80.0 12 0.00026 38.2 9.5 113 35-161 116-248 (325)
13 COG2433 Uncharacterized conser 79.6 5.3 0.00012 44.3 7.2 56 106-161 434-506 (652)
14 PRK14150 heat shock protein Gr 78.0 2.6 5.5E-05 40.3 3.8 54 360-416 138-192 (193)
15 cd00446 GrpE GrpE is the adeni 77.9 2.6 5.7E-05 37.5 3.7 50 359-411 83-132 (137)
16 TIGR00634 recN DNA repair prot 77.7 38 0.00083 37.0 13.2 135 46-215 250-393 (563)
17 smart00787 Spc7 Spc7 kinetocho 77.1 19 0.00041 36.9 10.0 37 124-160 206-242 (312)
18 PRK14151 heat shock protein Gr 76.6 3.6 7.8E-05 38.9 4.3 55 359-416 119-174 (176)
19 PRK14140 heat shock protein Gr 75.0 3.5 7.6E-05 39.5 3.9 53 360-415 136-189 (191)
20 PRK11637 AmiB activator; Provi 74.8 50 0.0011 34.7 12.7 51 106-156 189-239 (428)
21 PRK14158 heat shock protein Gr 74.0 4.6 0.0001 38.8 4.4 54 360-415 138-192 (194)
22 smart00787 Spc7 Spc7 kinetocho 73.6 65 0.0014 33.1 12.8 117 31-161 138-264 (312)
23 KOG2264 Exostosin EXT1L [Signa 73.6 9.1 0.0002 42.5 6.9 61 100-160 92-152 (907)
24 PF06785 UPF0242: Uncharacteri 72.6 3.5 7.6E-05 42.8 3.4 148 81-259 149-299 (401)
25 PF12325 TMF_TATA_bd: TATA ele 72.3 6.1 0.00013 35.2 4.5 36 124-159 18-53 (120)
26 PRK14144 heat shock protein Gr 72.3 4.4 9.5E-05 39.1 3.8 54 360-416 143-197 (199)
27 COG4026 Uncharacterized protei 71.8 22 0.00048 35.4 8.4 103 35-161 71-188 (290)
28 PF09726 Macoilin: Transmembra 71.4 15 0.00033 41.5 8.3 45 106-150 610-657 (697)
29 PRK14154 heat shock protein Gr 71.3 5.9 0.00013 38.5 4.5 55 359-415 151-206 (208)
30 PRK14161 heat shock protein Gr 71.3 6 0.00013 37.4 4.4 55 360-416 120-175 (178)
31 PRK14145 heat shock protein Gr 71.3 4.8 0.0001 38.8 3.8 53 360-415 141-194 (196)
32 PRK14148 heat shock protein Gr 70.5 5.2 0.00011 38.5 3.9 55 359-416 138-193 (195)
33 PRK14162 heat shock protein Gr 70.0 5.5 0.00012 38.3 3.9 54 360-415 138-192 (194)
34 PRK14160 heat shock protein Gr 69.8 6.4 0.00014 38.3 4.3 52 360-415 157-209 (211)
35 PRK14147 heat shock protein Gr 69.2 5.2 0.00011 37.6 3.5 54 359-415 114-168 (172)
36 PF10211 Ax_dynein_light: Axon 67.7 83 0.0018 29.9 11.3 36 36-71 83-118 (189)
37 PRK14141 heat shock protein Gr 67.7 6.1 0.00013 38.4 3.7 55 360-417 136-191 (209)
38 PF07106 TBPIP: Tat binding pr 67.4 22 0.00049 32.5 7.3 60 102-161 73-134 (169)
39 PRK10325 heat shock protein Gr 66.6 6.3 0.00014 37.8 3.6 56 359-417 138-194 (197)
40 PF04102 SlyX: SlyX; InterPro 66.3 21 0.00046 28.5 6.0 49 106-154 2-50 (69)
41 PF11500 Cut12: Spindle pole b 65.6 18 0.00038 33.8 6.1 30 132-161 101-130 (152)
42 COG3883 Uncharacterized protei 65.6 22 0.00048 35.9 7.2 107 104-220 55-163 (265)
43 PRK14155 heat shock protein Gr 65.4 9.3 0.0002 37.1 4.5 58 359-418 114-172 (208)
44 PRK11448 hsdR type I restricti 63.8 76 0.0017 38.1 12.3 103 35-147 105-209 (1123)
45 PRK14139 heat shock protein Gr 63.2 9.1 0.0002 36.5 3.9 55 359-417 128-183 (185)
46 COG5185 HEC1 Protein involved 62.8 26 0.00056 38.2 7.5 98 36-152 263-360 (622)
47 PF12718 Tropomyosin_1: Tropom 62.6 29 0.00064 31.5 6.9 58 105-162 4-61 (143)
48 TIGR00634 recN DNA repair prot 62.2 1.7E+02 0.0037 32.0 13.9 26 61-90 296-321 (563)
49 PRK10869 recombination and rep 61.3 2.6E+02 0.0056 30.8 16.2 135 49-215 246-388 (553)
50 PRK14163 heat shock protein Gr 60.9 13 0.00029 36.3 4.6 56 360-418 132-188 (214)
51 PRK14157 heat shock protein Gr 59.2 10 0.00022 37.3 3.6 49 367-417 175-224 (227)
52 PRK14153 heat shock protein Gr 58.9 21 0.00046 34.3 5.6 56 359-417 131-187 (194)
53 PF11559 ADIP: Afadin- and alp 58.2 1.4E+02 0.003 26.7 11.2 71 66-146 80-150 (151)
54 KOG4552 Vitamin-D-receptor int 57.3 35 0.00076 33.6 6.7 31 121-151 73-103 (272)
55 PF10234 Cluap1: Clusterin-ass 57.1 97 0.0021 31.4 10.1 38 56-93 61-98 (267)
56 TIGR02338 gimC_beta prefoldin, 57.1 25 0.00054 30.3 5.3 69 74-161 38-106 (110)
57 KOG0980 Actin-binding protein 57.0 1.5E+02 0.0033 34.8 12.5 91 120-210 524-645 (980)
58 PRK00295 hypothetical protein; 56.5 56 0.0012 26.2 6.8 50 106-155 3-52 (68)
59 PRK02793 phi X174 lysis protei 55.7 59 0.0013 26.4 6.9 51 105-155 5-55 (72)
60 PF08826 DMPK_coil: DMPK coile 55.4 40 0.00086 26.8 5.6 13 104-116 4-16 (61)
61 PF05984 Cytomega_UL20A: Cytom 55.0 4.5 9.7E-05 34.4 0.3 16 342-357 1-16 (100)
62 PHA02562 46 endonuclease subun 54.7 1.6E+02 0.0035 31.4 12.1 13 78-90 270-282 (562)
63 PF11365 DUF3166: Protein of u 54.5 1.1E+02 0.0025 26.4 8.7 84 125-210 4-89 (96)
64 COG2433 Uncharacterized conser 54.2 27 0.00059 39.0 6.1 46 115-160 422-467 (652)
65 TIGR02231 conserved hypothetic 53.9 1.6E+02 0.0035 31.8 11.9 101 45-156 72-172 (525)
66 PRK14143 heat shock protein Gr 53.8 14 0.0003 36.6 3.5 56 359-417 166-222 (238)
67 PRK11637 AmiB activator; Provi 53.2 1.1E+02 0.0024 32.1 10.4 52 109-160 76-127 (428)
68 PRK04406 hypothetical protein; 53.1 64 0.0014 26.5 6.7 47 106-152 9-55 (75)
69 COG3883 Uncharacterized protei 52.9 47 0.001 33.6 7.1 49 114-162 51-99 (265)
70 PRK04325 hypothetical protein; 52.6 66 0.0014 26.2 6.7 49 106-154 7-55 (74)
71 PRK00736 hypothetical protein; 52.0 71 0.0015 25.6 6.7 49 106-154 3-51 (68)
72 COG1579 Zn-ribbon protein, pos 51.8 2.6E+02 0.0056 27.9 12.8 52 36-92 30-81 (239)
73 PRK13729 conjugal transfer pil 51.8 38 0.00083 36.8 6.6 21 140-160 101-121 (475)
74 PRK14159 heat shock protein Gr 51.4 22 0.00047 33.7 4.3 45 368-415 129-174 (176)
75 PF12709 Kinetocho_Slk19: Cent 51.1 1.6E+02 0.0034 25.2 9.2 69 68-152 6-79 (87)
76 PF05377 FlaC_arch: Flagella a 50.8 29 0.00063 27.2 4.1 37 124-160 2-38 (55)
77 PRK14146 heat shock protein Gr 50.7 17 0.00038 35.4 3.6 49 367-417 159-212 (215)
78 PHA02562 46 endonuclease subun 50.7 2.5E+02 0.0054 30.1 12.7 107 29-161 298-404 (562)
79 PRK04778 septation ring format 50.5 1.4E+02 0.003 32.9 10.8 34 184-221 442-475 (569)
80 PRK10884 SH3 domain-containing 50.1 52 0.0011 31.8 6.7 51 111-161 121-171 (206)
81 PRK00846 hypothetical protein; 50.1 77 0.0017 26.4 6.7 52 105-156 10-61 (77)
82 PF11559 ADIP: Afadin- and alp 49.7 64 0.0014 28.9 6.9 43 118-160 55-97 (151)
83 PRK02119 hypothetical protein; 49.7 84 0.0018 25.6 6.9 49 105-153 6-54 (73)
84 PF06818 Fez1: Fez1; InterPro 49.6 23 0.00049 34.4 4.2 38 124-161 19-56 (202)
85 PF10805 DUF2730: Protein of u 49.3 74 0.0016 27.4 6.9 52 110-161 37-90 (106)
86 PF15066 CAGE1: Cancer-associa 49.1 98 0.0021 33.8 9.0 85 46-152 420-508 (527)
87 PRK14164 heat shock protein Gr 48.8 17 0.00037 35.6 3.2 47 367-417 169-216 (218)
88 PF04201 TPD52: Tumour protein 48.4 30 0.00065 32.6 4.6 36 125-160 32-67 (162)
89 KOG0250 DNA repair protein RAD 48.0 38 0.00082 40.1 6.3 58 104-161 333-390 (1074)
90 COG4942 Membrane-bound metallo 47.4 55 0.0012 35.1 6.9 66 80-159 38-110 (420)
91 PF01920 Prefoldin_2: Prefoldi 46.9 37 0.00079 28.0 4.6 43 119-161 59-101 (106)
92 PF05266 DUF724: Protein of un 46.7 73 0.0016 30.5 7.1 28 131-158 154-181 (190)
93 PRK14142 heat shock protein Gr 46.5 23 0.00049 34.9 3.7 51 367-418 132-183 (223)
94 PF05008 V-SNARE: Vesicle tran 46.0 1.2E+02 0.0026 24.0 7.3 55 106-160 23-78 (79)
95 PF09738 DUF2051: Double stran 45.9 92 0.002 32.0 8.1 83 75-162 78-166 (302)
96 PRK14149 heat shock protein Gr 45.7 33 0.00072 33.0 4.6 53 360-416 135-188 (191)
97 PF05983 Med7: MED7 protein; 45.0 38 0.00082 31.5 4.8 32 120-151 129-160 (162)
98 PF07889 DUF1664: Protein of u 44.7 1.5E+02 0.0032 26.8 8.3 80 68-160 41-120 (126)
99 PF07851 TMPIT: TMPIT-like pro 44.1 76 0.0016 33.1 7.2 87 44-159 4-91 (330)
100 PF15290 Syntaphilin: Golgi-lo 43.8 62 0.0013 33.2 6.3 23 124-146 110-134 (305)
101 KOG3647 Predicted coiled-coil 43.2 3.9E+02 0.0085 27.5 13.2 131 56-219 2-137 (338)
102 KOG4643 Uncharacterized coiled 43.1 91 0.002 37.0 8.2 85 71-156 133-218 (1195)
103 KOG0804 Cytoplasmic Zn-finger 43.0 70 0.0015 34.7 6.8 48 112-160 411-458 (493)
104 PF04859 DUF641: Plant protein 42.9 2.1E+02 0.0045 26.1 9.0 94 67-160 6-118 (131)
105 COG3937 Uncharacterized conser 42.8 70 0.0015 28.3 5.7 29 132-160 79-107 (108)
106 PF06818 Fez1: Fez1; InterPro 42.3 61 0.0013 31.6 5.8 57 106-162 50-106 (202)
107 PRK11546 zraP zinc resistance 42.3 1.2E+02 0.0027 27.9 7.5 32 57-88 38-69 (143)
108 PF04871 Uso1_p115_C: Uso1 / p 42.0 1.4E+02 0.003 27.0 7.8 55 115-169 62-117 (136)
109 COG4942 Membrane-bound metallo 41.7 2.4E+02 0.0053 30.4 10.6 46 106-151 64-109 (420)
110 PF11932 DUF3450: Protein of u 41.4 91 0.002 30.4 7.0 50 106-155 54-103 (251)
111 KOG2189 Vacuolar H+-ATPase V0 41.2 1E+02 0.0022 35.7 8.1 88 67-157 43-134 (829)
112 PF14584 DUF4446: Protein of u 41.1 91 0.002 28.8 6.6 18 75-92 18-35 (151)
113 PF05600 DUF773: Protein of un 41.1 1.8E+02 0.0039 31.9 9.8 92 63-161 397-492 (507)
114 PF10018 Med4: Vitamin-D-recep 40.9 1.1E+02 0.0025 28.7 7.4 32 124-155 31-62 (188)
115 PF08614 ATG16: Autophagy prot 40.8 1.9E+02 0.0042 27.1 8.9 51 110-160 132-182 (194)
116 PF12808 Mto2_bdg: Micro-tubul 40.7 68 0.0015 24.9 4.7 40 122-161 8-47 (52)
117 PRK10803 tol-pal system protei 40.5 74 0.0016 31.6 6.4 35 124-158 56-90 (263)
118 TIGR03185 DNA_S_dndD DNA sulfu 39.6 2.5E+02 0.0054 31.3 10.9 24 186-209 479-502 (650)
119 PHA03011 hypothetical protein; 39.3 1.2E+02 0.0026 26.8 6.5 91 60-155 25-118 (120)
120 KOG4571 Activating transcripti 39.0 71 0.0015 32.8 5.9 40 109-148 249-288 (294)
121 PF06005 DUF904: Protein of un 38.9 1.6E+02 0.0035 24.0 7.0 45 115-159 15-62 (72)
122 PF14257 DUF4349: Domain of un 37.7 4E+02 0.0086 26.0 11.4 58 106-163 130-196 (262)
123 KOG0993 Rab5 GTPase effector R 37.2 5.9E+02 0.013 27.8 13.0 119 32-160 340-465 (542)
124 PF04977 DivIC: Septum formati 37.2 70 0.0015 25.0 4.6 37 124-160 26-62 (80)
125 TIGR02209 ftsL_broad cell divi 37.0 1E+02 0.0022 24.7 5.6 45 121-166 30-75 (85)
126 PF00038 Filament: Intermediat 37.0 1.1E+02 0.0024 30.3 7.0 26 136-161 223-248 (312)
127 PRK04863 mukB cell division pr 36.9 5.3E+02 0.012 32.2 13.7 129 32-165 906-1049(1486)
128 KOG2391 Vacuolar sorting prote 36.6 2E+02 0.0044 30.3 8.8 27 121-147 252-278 (365)
129 PF05565 Sipho_Gp157: Siphovir 36.6 1.3E+02 0.0029 27.7 7.0 46 116-161 41-86 (162)
130 TIGR02894 DNA_bind_RsfA transc 36.5 93 0.002 29.4 5.9 46 115-160 87-135 (161)
131 KOG4603 TBP-1 interacting prot 36.5 1.9E+02 0.0041 27.9 7.9 21 140-160 120-140 (201)
132 PF12018 DUF3508: Domain of un 36.0 2E+02 0.0044 28.8 8.7 94 65-162 4-99 (281)
133 PF07106 TBPIP: Tat binding pr 35.7 1.3E+02 0.0028 27.5 6.8 78 53-131 59-139 (169)
134 PF10779 XhlA: Haemolysin XhlA 34.7 1.7E+02 0.0037 23.3 6.5 46 108-153 6-51 (71)
135 PF08581 Tup_N: Tup N-terminal 34.6 2.4E+02 0.0051 23.5 7.4 39 117-155 20-58 (79)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.4 3.3E+02 0.0071 24.1 11.8 106 36-160 20-129 (132)
137 PRK10884 SH3 domain-containing 34.4 1.2E+02 0.0026 29.4 6.5 35 124-158 120-154 (206)
138 PF05812 Herpes_BLRF2: Herpesv 34.2 2.8E+02 0.006 25.0 8.2 65 134-210 1-65 (118)
139 PF00170 bZIP_1: bZIP transcri 34.1 1.5E+02 0.0032 22.9 5.8 32 125-156 29-60 (64)
140 PF03962 Mnd1: Mnd1 family; I 34.0 2.1E+02 0.0045 27.2 8.0 15 234-248 155-169 (188)
141 COG2900 SlyX Uncharacterized p 34.0 2.1E+02 0.0046 23.6 6.8 53 105-157 5-57 (72)
142 PF05278 PEARLI-4: Arabidopsis 34.0 3.7E+02 0.0079 27.4 10.0 19 31-49 120-138 (269)
143 TIGR03007 pepcterm_ChnLen poly 33.7 6E+02 0.013 27.0 12.2 73 81-160 262-348 (498)
144 cd00632 Prefoldin_beta Prefold 33.0 89 0.0019 26.5 4.9 37 124-160 65-101 (105)
145 PF04880 NUDE_C: NUDE protein, 32.9 27 0.00059 32.9 1.8 38 103-145 16-53 (166)
146 COG0216 PrfA Protein chain rel 32.8 2.2E+02 0.0048 30.1 8.4 29 134-162 73-102 (363)
147 PF00170 bZIP_1: bZIP transcri 32.2 1E+02 0.0022 23.8 4.7 38 115-152 26-63 (64)
148 KOG1899 LAR transmembrane tyro 32.2 1.3E+02 0.0027 34.3 6.9 62 101-162 125-207 (861)
149 PF04380 BMFP: Membrane fusoge 32.1 1.7E+02 0.0037 24.0 6.2 21 137-157 58-78 (79)
150 PF08172 CASP_C: CASP C termin 32.0 78 0.0017 31.5 4.9 40 122-161 93-132 (248)
151 KOG4010 Coiled-coil protein TP 32.0 76 0.0017 30.8 4.6 36 125-160 47-82 (208)
152 COG4839 FtsL Protein required 31.9 3.5E+02 0.0075 24.5 8.4 105 53-166 3-110 (120)
153 TIGR03185 DNA_S_dndD DNA sulfu 31.9 1.6E+02 0.0034 32.9 7.8 47 104-150 205-251 (650)
154 PF09849 DUF2076: Uncharacteri 31.9 1.7E+02 0.0036 29.3 7.2 32 36-80 6-37 (247)
155 PF04880 NUDE_C: NUDE protein, 31.7 18 0.00038 34.2 0.3 32 127-159 19-53 (166)
156 TIGR02169 SMC_prok_A chromosom 31.5 8.3E+02 0.018 28.4 13.8 6 393-398 1146-1151(1164)
157 PF15188 CCDC-167: Coiled-coil 31.4 1.1E+02 0.0025 25.9 5.1 12 75-86 3-14 (85)
158 PF09726 Macoilin: Transmembra 31.3 3.6E+02 0.0079 30.9 10.6 33 118-150 548-580 (697)
159 KOG0250 DNA repair protein RAD 30.8 4.3E+02 0.0093 31.9 11.1 27 66-92 337-363 (1074)
160 PF01486 K-box: K-box region; 30.8 2.7E+02 0.0058 23.4 7.4 51 110-160 48-99 (100)
161 PF10805 DUF2730: Protein of u 30.7 1.6E+02 0.0035 25.3 6.1 27 66-92 35-61 (106)
162 PF04977 DivIC: Septum formati 30.7 65 0.0014 25.1 3.4 30 132-161 20-49 (80)
163 PRK14156 heat shock protein Gr 30.5 61 0.0013 30.8 3.7 45 370-415 130-175 (177)
164 PF15233 SYCE1: Synaptonemal c 30.3 1.4E+02 0.0029 27.4 5.7 55 100-161 5-59 (134)
165 PF05667 DUF812: Protein of un 30.2 1.4E+02 0.003 33.5 6.9 54 107-160 327-380 (594)
166 PHA03155 hypothetical protein; 30.2 3.2E+02 0.007 24.5 7.8 49 135-196 7-55 (115)
167 TIGR01843 type_I_hlyD type I s 30.2 1.8E+02 0.0038 29.6 7.3 54 107-160 129-182 (423)
168 PF05529 Bap31: B-cell recepto 30.0 1.6E+02 0.0034 27.5 6.4 28 132-159 157-184 (192)
169 PRK15422 septal ring assembly 30.0 97 0.0021 26.0 4.3 37 124-160 6-42 (79)
170 COG4904 Uncharacterized protei 29.7 4.9E+02 0.011 24.6 9.2 39 40-80 6-48 (174)
171 PF12777 MT: Microtubule-bindi 29.6 2.3E+02 0.005 29.1 8.1 52 107-158 220-271 (344)
172 TIGR02680 conserved hypothetic 29.6 8.2E+02 0.018 30.2 13.7 34 42-75 816-853 (1353)
173 PF14555 UBA_4: UBA-like domai 29.2 36 0.00079 24.5 1.6 20 205-224 17-36 (43)
174 PRK11546 zraP zinc resistance 28.4 4E+02 0.0087 24.6 8.5 27 110-136 49-75 (143)
175 PF15456 Uds1: Up-regulated Du 28.1 4E+02 0.0087 23.9 8.3 80 119-207 15-98 (124)
176 PF13874 Nup54: Nucleoporin co 28.0 1.4E+02 0.003 26.9 5.4 69 91-159 16-88 (141)
177 smart00338 BRLZ basic region l 27.7 1.1E+02 0.0024 23.6 4.2 33 125-157 29-61 (65)
178 PF02050 FliJ: Flagellar FliJ 27.5 3.3E+02 0.0072 22.0 10.8 77 75-156 17-93 (123)
179 cd07686 F-BAR_Fer The F-BAR (F 27.5 2.9E+02 0.0063 27.4 8.0 86 71-161 66-152 (234)
180 PF05529 Bap31: B-cell recepto 27.4 80 0.0017 29.5 4.0 33 118-150 157-189 (192)
181 TIGR00606 rad50 rad50. This fa 27.4 1.8E+02 0.0038 35.4 7.7 55 105-159 826-880 (1311)
182 PF05266 DUF724: Protein of un 27.1 2.4E+02 0.0051 27.0 7.1 51 106-156 91-151 (190)
183 KOG0996 Structural maintenance 27.0 5E+02 0.011 31.7 10.8 45 34-78 462-506 (1293)
184 PF09766 FimP: Fms-interacting 27.0 2E+02 0.0044 29.9 7.2 57 103-159 93-152 (355)
185 PF04645 DUF603: Protein of un 26.8 2.1E+02 0.0045 27.5 6.5 41 119-159 116-161 (181)
186 PF10046 BLOC1_2: Biogenesis o 26.6 3E+02 0.0066 23.3 7.0 30 132-161 69-98 (99)
187 PF04156 IncA: IncA protein; 26.4 5.1E+02 0.011 23.8 11.1 41 115-155 123-163 (191)
188 KOG0978 E3 ubiquitin ligase in 26.4 4E+02 0.0086 30.7 9.6 77 75-161 543-619 (698)
189 TIGR02473 flagell_FliJ flagell 26.2 4.1E+02 0.0089 22.8 8.0 76 74-156 31-109 (141)
190 PF13863 DUF4200: Domain of un 26.0 2.4E+02 0.0051 24.2 6.4 52 110-161 55-106 (126)
191 PF11932 DUF3450: Protein of u 25.8 2.4E+02 0.0051 27.5 7.1 33 124-156 65-97 (251)
192 PF07798 DUF1640: Protein of u 25.8 2.1E+02 0.0045 26.6 6.4 43 119-161 55-98 (177)
193 PF14193 DUF4315: Domain of un 25.4 3.1E+02 0.0068 23.0 6.7 15 182-196 47-61 (83)
194 KOG0243 Kinesin-like protein [ 25.3 2.4E+02 0.0052 33.7 7.9 11 106-116 439-449 (1041)
195 PF10267 Tmemb_cc2: Predicted 25.2 2.4E+02 0.0051 30.2 7.3 54 105-161 216-269 (395)
196 PF03112 DUF244: Uncharacteriz 25.1 87 0.0019 29.3 3.6 41 121-161 62-102 (158)
197 KOG0161 Myosin class II heavy 25.0 1.6E+02 0.0035 37.5 6.8 51 106-156 934-984 (1930)
198 PF05700 BCAS2: Breast carcino 25.0 5.7E+02 0.012 24.6 9.4 40 115-154 124-168 (221)
199 KOG0993 Rab5 GTPase effector R 24.8 2.1E+02 0.0046 31.0 6.8 36 125-160 151-186 (542)
200 PF05596 Taeniidae_ag: Taeniid 24.7 2.9E+02 0.0062 22.3 6.0 40 79-133 13-52 (64)
201 PF10146 zf-C4H2: Zinc finger- 24.7 2.2E+02 0.0047 28.2 6.5 12 267-280 196-207 (230)
202 PF10475 DUF2450: Protein of u 24.4 2.9E+02 0.0063 27.6 7.5 55 108-162 31-93 (291)
203 PF04156 IncA: IncA protein; 24.3 2.4E+02 0.0053 25.9 6.5 17 54-70 60-76 (191)
204 PRK09343 prefoldin subunit bet 24.3 1.5E+02 0.0033 26.1 4.9 39 123-161 72-110 (121)
205 COG4026 Uncharacterized protei 24.2 1.7E+02 0.0036 29.4 5.5 48 105-152 160-207 (290)
206 PF13747 DUF4164: Domain of un 24.1 3.4E+02 0.0073 22.9 6.7 32 125-156 35-66 (89)
207 PF09738 DUF2051: Double stran 24.0 4E+02 0.0086 27.4 8.5 62 103-164 114-175 (302)
208 COG5124 Protein predicted to b 23.9 4.1E+02 0.0089 25.8 7.9 28 233-260 171-200 (209)
209 PF09755 DUF2046: Uncharacteri 23.8 8.1E+02 0.018 25.5 10.6 51 112-162 132-204 (310)
210 PRK04863 mukB cell division pr 23.6 1E+03 0.022 29.9 13.1 23 192-214 465-487 (1486)
211 PF04912 Dynamitin: Dynamitin 23.5 3E+02 0.0066 28.7 7.7 45 106-160 341-385 (388)
212 PF00769 ERM: Ezrin/radixin/mo 23.4 1.9E+02 0.0042 28.5 6.0 44 116-159 83-126 (246)
213 KOG4657 Uncharacterized conser 23.4 7.7E+02 0.017 24.8 11.0 95 35-161 31-125 (246)
214 KOG0977 Nuclear envelope prote 23.2 44 0.00095 37.0 1.5 33 129-161 296-328 (546)
215 KOG0971 Microtubule-associated 23.2 3.2E+02 0.007 32.5 8.2 49 112-160 998-1050(1243)
216 PF15619 Lebercilin: Ciliary p 23.0 2.4E+02 0.0052 27.1 6.3 50 101-150 60-110 (194)
217 KOG3091 Nuclear pore complex, 23.0 2.1E+02 0.0045 31.5 6.5 54 105-161 338-394 (508)
218 COG1196 Smc Chromosome segrega 23.0 7.8E+02 0.017 29.7 11.8 20 36-55 764-783 (1163)
219 PF13815 Dzip-like_N: Iguana/D 22.8 1.9E+02 0.0041 25.2 5.2 34 124-157 82-115 (118)
220 KOG4348 Adaptor protein CMS/SE 22.8 1.9E+02 0.004 31.7 5.9 44 103-156 571-614 (627)
221 PF00261 Tropomyosin: Tropomyo 22.7 3.3E+02 0.0072 26.4 7.4 55 106-160 146-200 (237)
222 PF07160 DUF1395: Protein of u 22.6 4.4E+02 0.0096 26.1 8.3 60 76-148 2-62 (243)
223 PF14584 DUF4446: Protein of u 22.4 1.7E+02 0.0036 27.1 4.9 50 113-162 25-79 (151)
224 PF09730 BicD: Microtubule-ass 22.3 3.2E+02 0.0068 31.5 8.0 44 111-154 110-153 (717)
225 PF13094 CENP-Q: CENP-Q, a CEN 22.2 4.9E+02 0.011 23.5 8.0 43 119-161 38-87 (160)
226 PF00038 Filament: Intermediat 22.2 3.3E+02 0.0071 27.0 7.4 53 106-158 73-125 (312)
227 PF07888 CALCOCO1: Calcium bin 22.2 2.6E+02 0.0057 31.1 7.2 51 106-156 169-226 (546)
228 PF00458 WHEP-TRS: WHEP-TRS do 22.0 2.5E+02 0.0053 21.9 5.1 36 106-149 1-36 (56)
229 PRK01156 chromosome segregatio 21.9 1.3E+03 0.027 26.7 13.4 31 32-63 148-178 (895)
230 PF06156 DUF972: Protein of un 21.4 1.6E+02 0.0034 25.8 4.3 33 124-156 10-42 (107)
231 cd00632 Prefoldin_beta Prefold 21.4 3.3E+02 0.0072 23.0 6.3 29 120-148 75-103 (105)
232 PRK13182 racA polar chromosome 21.4 3.6E+02 0.0079 25.5 7.1 39 123-161 100-143 (175)
233 TIGR02977 phageshock_pspA phag 21.3 3.1E+02 0.0068 26.3 6.8 52 110-161 94-145 (219)
234 PF05278 PEARLI-4: Arabidopsis 21.1 3.1E+02 0.0067 27.9 6.9 28 28-55 91-129 (269)
235 KOG4603 TBP-1 interacting prot 21.1 3E+02 0.0065 26.6 6.4 29 56-84 16-51 (201)
236 PRK03598 putative efflux pump 21.1 8.3E+02 0.018 24.3 13.2 27 135-161 177-203 (331)
237 KOG0614 cGMP-dependent protein 21.0 2E+02 0.0044 32.3 5.9 47 110-156 19-65 (732)
238 TIGR00019 prfA peptide chain r 20.9 1E+03 0.022 25.2 12.2 25 194-218 125-149 (360)
239 PF10473 CENP-F_leu_zip: Leuci 20.9 5.7E+02 0.012 23.5 8.0 55 106-160 29-90 (140)
240 PF01166 TSC22: TSC-22/dip/bun 20.9 97 0.0021 24.7 2.6 20 137-156 15-34 (59)
241 PF11488 Lge1: Transcriptional 20.9 3.9E+02 0.0084 21.9 6.3 42 106-148 35-77 (80)
242 PF15070 GOLGA2L5: Putative go 20.9 6.4E+02 0.014 28.5 10.0 85 72-159 48-138 (617)
243 PF06730 FAM92: FAM92 protein; 20.7 2.6E+02 0.0057 27.6 6.1 45 104-152 89-137 (219)
244 TIGR00606 rad50 rad50. This fa 20.6 4.3E+02 0.0093 32.2 9.1 54 109-162 971-1024(1311)
245 PF05911 DUF869: Plant protein 20.5 1E+03 0.022 27.7 11.6 83 79-161 560-642 (769)
246 PF11598 COMP: Cartilage oligo 20.4 2.2E+02 0.0048 21.4 4.3 38 105-149 5-42 (45)
247 KOG4848 Extracellular matrix-a 20.4 8.1E+02 0.018 24.1 9.2 79 65-149 95-173 (225)
248 PF07445 priB_priC: Primosomal 20.4 7.1E+02 0.015 23.3 10.5 60 102-161 103-170 (173)
249 COG1508 RpoN DNA-directed RNA 20.4 4.7E+02 0.01 28.5 8.4 38 116-158 265-302 (444)
250 KOG3850 Predicted membrane pro 20.2 3.8E+02 0.0083 28.9 7.5 55 104-161 263-317 (455)
251 PF13166 AAA_13: AAA domain 20.1 7.5E+02 0.016 27.4 10.4 21 190-210 499-519 (712)
252 KOG0995 Centromere-associated 20.0 2.1E+02 0.0045 32.1 5.8 45 110-154 282-326 (581)
No 1
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=100.00 E-value=1.4e-46 Score=332.52 Aligned_cols=130 Identities=55% Similarity=0.858 Sum_probs=125.6
Q ss_pred hhccChHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhH
Q 014591 27 AMNQNPEALEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRL 106 (422)
Q Consensus 27 ~~~~~~~~~eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l 106 (422)
.+.++.++++++|++|||+||+||+||+|||+||+|||||+|++||++||+||++||+||++|++++++++ |+.+++
T Consensus 2 ~~~~~~~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~---~~~~~l 78 (131)
T PF04859_consen 2 EEAQRAAAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPS---PQVARL 78 (131)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---cccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999988655 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
.++++|+|++++|||+++++||+|++.||+||.+||++|+++.+.|++|||||
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999996
No 2
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=90.18 E-value=0.38 Score=43.58 Aligned_cols=55 Identities=25% Similarity=0.374 Sum_probs=36.7
Q ss_pred CcceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEe
Q 014591 358 PNVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYL 415 (422)
Q Consensus 358 p~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyL 415 (422)
-.+..+.+. |..|||.+||-|..... + +..+..|.=.+.|||+++++||+ ++|-+
T Consensus 108 ~Gv~~i~~~-G~~FDp~~heav~~~~~-~-~~~~~~I~~v~~~GY~~~~rvlRpA~V~V 163 (165)
T PF01025_consen 108 NGVEEIEPV-GEPFDPNLHEAVETVPD-P-DKEPGTIVEVVRPGYRLGGRVLRPAEVVV 163 (165)
T ss_dssp TTEEEE--T-SSB--TTTEEEEEEECS-S-SS-CTBEEEECC-EEEETTEEEE-EEEEE
T ss_pred CCCEecCCC-CCCCCHHHheeheecCc-C-CCCcCeEEEEEecCEEECCEEeeeeEEEe
Confidence 356677777 99999999999876432 2 23567788899999999999886 44543
No 3
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.30 E-value=1.2 Score=42.10 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=28.5
Q ss_pred HHHHHHHhhhHHHHHHHHhh-------c-------CCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchh
Q 014591 40 SKIFSNISSLKSAYIELQAA-------H-------TPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSR 105 (422)
Q Consensus 40 ~~lFa~vSslK~AY~qLQ~A-------h-------~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~ 105 (422)
.+|++.++.++..=..||.. | .|-.+..|..-+..++.--..|+++++.--...-.-...+-....
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~ 106 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQE 106 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 78889999999988888862 1 122333344444444433344555444222221100011222333
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVK-------KFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~-------kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+.+++.+.+..++.++..+. .|+.+++.|+.-+..|+.++..++-.+..+|+++..
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444 444444555555566666666666666667766653
No 4
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.78 E-value=2.5 Score=34.45 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 103 DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+..|..|.+....---....++++|.+++..-+.+|..|+.+++++......|+.++..
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566666665555566777899999999999999999999999999999999988764
No 5
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.56 E-value=9 Score=39.00 Aligned_cols=124 Identities=20% Similarity=0.272 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCh--hhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHH
Q 014591 32 PEALEALVSKIFSNISSLKSAYIELQAAHTPYDP--DKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAE 109 (422)
Q Consensus 32 ~~~~eali~~lFa~vSslK~AY~qLQ~Ah~Pydp--d~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~ae 109 (422)
....+.+...|-..+..|+.-|..|...-.=-|+ +++.+--..+-.|+.+|-.+....-. +..-....+.++
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~------~D~~eL~~lr~e 217 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES------CDQEELEALRQE 217 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------cCHHHHHHHHHH
Confidence 3344667888888888888888777632211110 12222223333344444333332111 111123445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+.++..-+......+.+|+.+++..+.+|..+..+..++.....++++.+..
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555666777777777777777777777777777777766553
No 6
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.03 E-value=3.5 Score=35.95 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
|.|........+-+...-..+|+.+++.||.+|-.+.++++.+.-.|..|+||+-.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~ 65 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEV 65 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666678999999999999999999999999999999999754
No 7
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.07 E-value=9.7 Score=42.02 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=52.9
Q ss_pred HhhhHHHHHHHHhh---------cCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHH
Q 014591 46 ISSLKSAYIELQAA---------HTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSL 116 (422)
Q Consensus 46 vSslK~AY~qLQ~A---------h~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~l 116 (422)
+..+-.||.+|+.| .++|||+.+..- -+=|..|..|+|.|... + +..-...+++++.-.-
T Consensus 268 ~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~v----e~Rl~~L~~l~RKY~~~-~------~~l~~~~~~~~~el~~ 336 (557)
T COG0497 268 AELLEEALYELEEASEELRAYLDELEFDPNRLEEV----EERLFALKSLARKYGVT-I------EDLLEYLDKIKEELAQ 336 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH----HHHHHHHHHHHHHhCCC-H------HHHHHHHHHHHHHHHH
Confidence 44556689998877 469999998653 23355566666666543 1 2233455566665555
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 014591 117 LKTYEVMVKKFQSEIQNKDSEIHQLQQHI 145 (422)
Q Consensus 117 l~~ye~~~~kL~~e~~~kDsEi~~Lr~~L 145 (422)
|...+.-.+.|+.++..-..+....-++|
T Consensus 337 L~~~~~~~~~Le~~~~~l~~~~~~~A~~L 365 (557)
T COG0497 337 LDNSEESLEALEKEVKKLKAELLEAAEAL 365 (557)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655444444333333
No 8
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=1.4 Score=42.07 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=39.6
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEEE
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQS 411 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vikc 411 (422)
.+..+.+ .|..|||.++|-|.... +.+..+..|.-.+-.||+++++||+-
T Consensus 135 Gv~~i~~-~Ge~FDP~~HeAv~~~~--~~~~~~~tVv~v~qkGY~l~dRVLRp 184 (193)
T COG0576 135 GVEEIGP-EGEKFDPNLHEAVQRVE--SEDVEPNTVVEVLQKGYKLNDRVLRP 184 (193)
T ss_pred CCEEeCC-CCCCCCHHHhhheeeec--CCCCCCCeEEEEeecCeeeCCEeccc
Confidence 4666777 89999999999987642 23345677888899999999999973
No 9
>PRK09039 hypothetical protein; Validated
Probab=82.37 E-value=25 Score=36.34 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=50.5
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 014591 80 KNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQK 151 (422)
Q Consensus 80 ~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~ 151 (422)
+.|.++|..|... .|++..|.++|...+.-+...+..+..+|.+.+..+..|..|+++|+.+...
T Consensus 123 ~~L~~~k~~~se~-------~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 123 QELDSEKQVSARA-------LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888875 3678888888888887787778888888888877777888888777766533
No 10
>PRK10869 recombination and repair protein; Provisional
Probab=81.44 E-value=17 Score=39.91 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=5.4
Q ss_pred hhhhHHHHHHHh
Q 014591 79 LKNLSELKHFYR 90 (422)
Q Consensus 79 L~~ls~LK~~y~ 90 (422)
|..|..|||.|.
T Consensus 305 l~~l~~L~rKyg 316 (553)
T PRK10869 305 LSKQISLARKHH 316 (553)
T ss_pred HHHHHHHHHHhC
Confidence 334444444444
No 11
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=81.37 E-value=12 Score=38.11 Aligned_cols=80 Identities=16% Similarity=0.384 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh-hhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE-KNLKLRGLSTKESEGSGGENGFFPVDLT 184 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le-k~l~~~~ls~~~~~~~~~~~~~~s~~~s 184 (422)
-+-.+|...-.+|-..+-+++-+..+..||+||.+||.+|......=-+=| +|+-.
T Consensus 59 YLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEA----------------------- 115 (305)
T PF15290_consen 59 YLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEA----------------------- 115 (305)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 334456555666667777788888888999999999999975433221111 22110
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Q 014591 185 PDLFTQAVEAAYKAIHDFSKPLINMMKAA 213 (422)
Q Consensus 185 p~~F~~~~~~A~~si~~FaK~Li~~M~~a 213 (422)
.-+|.+||+-|+++ |-.|.-||++
T Consensus 116 ----QLALKEARkEIkQL-kQvieTmrss 139 (305)
T PF15290_consen 116 ----QLALKEARKEIKQL-KQVIETMRSS 139 (305)
T ss_pred ----HHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 23688899999886 6667777776
No 12
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.00 E-value=12 Score=38.17 Aligned_cols=113 Identities=19% Similarity=0.347 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhcCCCC----------------hhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCC
Q 014591 35 LEALVSKIFSNISSLKSAYIELQAAHTPYD----------------PDKIQAADKLVISELKNLSELKHFYRENNPKPAC 98 (422)
Q Consensus 35 ~eali~~lFa~vSslK~AY~qLQ~Ah~Pyd----------------pd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~ 98 (422)
+.++|..=|..| ..|+.||.-+.=|+ -+.++.-.+.+...+..|.++.......
T Consensus 116 ~r~~m~~q~~~v----K~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~------ 185 (325)
T PF08317_consen 116 MRLLMDNQFQLV----KTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRER------ 185 (325)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 344555545444 23666665555443 2445555556666666666666555443
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHH----HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 99 ISPQDSRLAAEIQEQQSLLKTYEVM----VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 99 ~~p~~~~l~aei~E~q~ll~~ye~~----~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
...|..++...+.+....+.. ++.|+.++..-+.+|..+|++|.+++.....++.++..
T Consensus 186 ----~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 186 ----KAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred ----HHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234667777777666665533 67778888888888888888888877777777766654
No 13
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.58 E-value=5.3 Score=44.33 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEI-----------------QNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~-----------------~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
|..|+++.+..+..+...+.+|++++ +.+|.+|..|+.+|.+..+....|+++|++
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443 446667777777777777777777777766
No 14
>PRK14150 heat shock protein GrpE; Provisional
Probab=78.05 E-value=2.6 Score=40.33 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=39.1
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEee
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLS 416 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs 416 (422)
+..+.+ .|..|||.++|-|..... + +..+-.|--.+-||++++++||+ ++|.++
T Consensus 138 v~~i~~-~G~~FDP~~HeAv~~~~~-~-~~~~gtI~~v~q~GY~l~drvLRpA~V~Vs 192 (193)
T PRK14150 138 VEVVGP-VGEPFNPEVHQAISMQES-E-DHEPNTVMMVMQKGYTLNGRLLRPAMVMVS 192 (193)
T ss_pred CeeeCC-CCCCCCHhHcceeeeeCC-C-CCCcCEEEEEeeCCeEeCCEEecceEEEeC
Confidence 455554 599999999999965321 2 22456677889999999999997 456543
No 15
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=77.85 E-value=2.6 Score=37.51 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=37.1
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEEE
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQS 411 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vikc 411 (422)
.+..+.+. |..|||.++|-|..... .+..+..|.=.+.|||++++.||+-
T Consensus 83 Gv~~i~~~-g~~FDp~~Heav~~~~~--~~~~~~~I~~v~~~GY~~~~rvlRp 132 (137)
T cd00446 83 GVEKIEPE-GEPFDPNLHEAVMQVPS--PDVEPGTVVEVLQKGYKLGDRVLRP 132 (137)
T ss_pred CCEEECCC-CCCCCHHHheeeeeecC--CCCCcCEEEEEeecCeEECCEEecc
Confidence 45555553 77999999999865432 2234667888999999999999873
No 16
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.74 E-value=38 Score=36.98 Aligned_cols=135 Identities=18% Similarity=0.256 Sum_probs=67.8
Q ss_pred HhhhHHHHHHHHhhcCCCChhhHHHhHHH---HHHHhhhhHHHHHHHhhC-CCCCCCCCCc-chhHHHHHHHHHHHHHHH
Q 014591 46 ISSLKSAYIELQAAHTPYDPDKIQAADKL---VISELKNLSELKHFYREN-NPKPACISPQ-DSRLAAEIQEQQSLLKTY 120 (422)
Q Consensus 46 vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~---vVseL~~ls~LK~~y~~~-~~~~~~~~p~-~~~l~aei~E~q~ll~~y 120 (422)
++.+..+--.|+.. |||.- ...-+. +..+|+.++.--+.|... +.| |. ...+..++...+++.+.|
T Consensus 250 ~~~l~~~~~~l~~~---~d~~~-~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~d-----p~~L~ele~RL~~l~~LkrKy 320 (563)
T TIGR00634 250 LEGLGEAQLALASV---IDGSL-RELAEQVGNALTEVEEATRELQNYLDELEFD-----PERLNEIEERLAQIKRLKRKY 320 (563)
T ss_pred HHHHHHHHHHHHHh---hhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHh
Confidence 34555555556655 66543 222222 233444444444444443 222 32 455666666777777777
Q ss_pred HHHHHHHHHHHhccchHHHHH---HHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-H
Q 014591 121 EVMVKKFQSEIQNKDSEIHQL---QQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAA-Y 196 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~L---r~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A-~ 196 (422)
+....++-...+....++..+ ...++++.....++++++... -..++.. +
T Consensus 321 g~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~--------------------------a~~Ls~~R~ 374 (563)
T TIGR00634 321 GASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA--------------------------AVALSLIRR 374 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHH
Confidence 655544444443333332222 223444444444444443321 1223333 4
Q ss_pred HHHHHhHHHHHHHHHhcCC
Q 014591 197 KAIHDFSKPLINMMKAAGW 215 (422)
Q Consensus 197 ~si~~FaK~Li~~M~~agw 215 (422)
++...|++.+..+|+.-|+
T Consensus 375 ~~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 375 KAAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 6678888999888887766
No 17
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.09 E-value=19 Score=36.92 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=16.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.++++.++..-+.+|...+.+|.+++.....++.++.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 18
>PRK14151 heat shock protein GrpE; Provisional
Probab=76.62 E-value=3.6 Score=38.85 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=40.0
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEee
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLS 416 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs 416 (422)
.+..+.. .|..|||.+.|-|..... + +-.+-.|.=.+-+|++++++||+ ++|-++
T Consensus 119 Gv~~i~~-~G~~FDP~~HEAv~~~~~-~-~~~~gtI~~v~qkGY~l~dRvLRpA~V~Va 174 (176)
T PRK14151 119 QLEAVDP-HGEPFNPEHHQAMAMQES-A-DVEPNSVLKVFQKGYLLNGRLLRPAMVVVS 174 (176)
T ss_pred CCEEeCC-CCCCCCHHHhhcceeeCC-C-CCCcCeEEEEeeCCcEECCEEecCcEEEec
Confidence 4555555 699999999999975431 2 22456677888999999999997 456554
No 19
>PRK14140 heat shock protein GrpE; Provisional
Probab=75.04 E-value=3.5 Score=39.49 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=37.8
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEe
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYL 415 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyL 415 (422)
+..+- ..|..|||.++|-|.... +.+-.+-.|.-.+-+|++++++||+ ++|-+
T Consensus 136 V~~i~-~~Ge~FDP~~HEAv~~~~--~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 189 (191)
T PRK14140 136 VEVIE-AVGEQFDPNLHQAVMQDE--DEDFESNEVVEELQKGYKLKDRVIRPSMVKV 189 (191)
T ss_pred CEeeC-CCCCCCChHHhccceeeC--CCCCCcCeEEEEeeCCeEeCCEEecCcEEEe
Confidence 34443 469999999999986432 1223456777889999999999997 45544
No 20
>PRK11637 AmiB activator; Provisional
Probab=74.82 E-value=50 Score=34.67 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
+..+..+++.+++..+....+|+.+...++.++..|+.++.+......+|+
T Consensus 189 le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~ 239 (428)
T PRK11637 189 LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR 239 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666666666666666666666655555444444443
No 21
>PRK14158 heat shock protein GrpE; Provisional
Probab=74.04 E-value=4.6 Score=38.78 Aligned_cols=54 Identities=17% Similarity=0.350 Sum_probs=38.5
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEe
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYL 415 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyL 415 (422)
+..+....|..|||.+.|-|.... +.+..+-.|.=.+-||++++++||+ ++|-+
T Consensus 138 v~~I~~~~G~~FDP~~HEAv~~~~--~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14158 138 VTPVEAEKGTPFDPAYHQAMCQVE--SAEQEPNTVVAVFQKGYLLNERLLRPAMVSV 192 (194)
T ss_pred CEEecCCCCCCCChHHhhhheeec--CCCCCcCEEEEEeeCCcEeCCEEeecceeEe
Confidence 444444469999999999886532 1222456788899999999999997 45544
No 22
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.59 E-value=65 Score=33.06 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHH----------HHHhhhhHHHHHHHhhCCCCCCCCC
Q 014591 31 NPEALEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLV----------ISELKNLSELKHFYRENNPKPACIS 100 (422)
Q Consensus 31 ~~~~~eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~v----------VseL~~ls~LK~~y~~~~~~~~~~~ 100 (422)
+....+.|...|-..+..|+..|..|= ..++.+|.++ -.|+..|-.++.-.... ..
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~--------~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~------d~ 203 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLM--------KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC------DP 203 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC------CH
Confidence 345567788888888888888887763 2334444333 23444443333332222 11
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 101 PQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 101 p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
-....+..+|.++..-+...-.-+..++.++...++.|.....+..++.....++++.+.+
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233334444443333333333466777777777777777777777777777777766554
No 23
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=73.55 E-value=9.1 Score=42.49 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=52.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 100 SPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 100 ~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+-..+.+++..||.++-+..|...+++|+..|..+..|+..|+.+++..+...++|-.+-+
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 3456778888999999999999999999999999999999999999988888877765543
No 24
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.55 E-value=3.5 Score=42.80 Aligned_cols=148 Identities=19% Similarity=0.334 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 81 NLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 81 ~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.|-++++.++++..... --+..|...+.-||-|...|.++...=-.=++.|.+-|..|+.|.+++.-..+.|
T Consensus 149 qL~~l~~e~~Ekeeesq---~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL----- 220 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQ---TLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL----- 220 (401)
T ss_pred hHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhc--CCChHHhhhcc-CCCccccccccch
Q 014591 161 LRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAAYKAIHDFSKPLINMMKAA--GWDLDSAANSI-EPNVVYAKRAHKK 237 (422)
Q Consensus 161 ~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A~~si~~FaK~Li~~M~~a--gwdl~~a~~~i-~~~v~~~k~~h~k 237 (422)
..+.-+.=+.+-..++-+.++-.+-|++++|.. ...-..+++++ ..+-..+..+-.-
T Consensus 221 --------------------LQle~~~~e~~p~~~~~~s~~v~~ql~selkkivf~~enie~A~slTasry~~~e~svhn 280 (401)
T PF06785_consen 221 --------------------LQLESDMKESMPSTPSPSSQDVPKQLVSELKKIVFKVENIEAASSLTASRYINSESSVHN 280 (401)
T ss_pred --------------------HHhhhhhhhcCCCCCcchhhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHhhhccCCcccc
Q ss_pred hhHHHHhHHHHhcCCCCCCcCC
Q 014591 238 YAFESHICQRMFTGFQQEDFSV 259 (422)
Q Consensus 238 yalEA~v~~~MF~gFe~~~F~~ 259 (422)
|++| ||.+|++-.+++-++
T Consensus 281 ysLd---cRrLfDsLreEnlgm 299 (401)
T PF06785_consen 281 YSLD---CRRLFDSLREENLGM 299 (401)
T ss_pred chHH---HHHHHhhhcccccce
No 25
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.34 E-value=6.1 Score=35.21 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=24.1
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
+++|+++|+.+|.|+..|+.+|..+......+..-|
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777776666666555444
No 26
>PRK14144 heat shock protein GrpE; Provisional
Probab=72.27 E-value=4.4 Score=39.13 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=39.2
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEee
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLS 416 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs 416 (422)
+..+.. -|..|||.++|-|..... .+..+-.|.=.+-+|++++++||+ ++|-++
T Consensus 143 V~~I~~-~G~~FDP~~HEAv~~~~~--~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vs 197 (199)
T PRK14144 143 VEQIDP-LGQTFDPQQHEAMSMQPA--PGAPPNSVITVFQKGYKLSDRVIRPARVIVS 197 (199)
T ss_pred CEEeCC-CCCCCChhHhceeeeeCC--CCCCcCeEEEEeeCCcEECCEEecccEEEec
Confidence 444443 599999999999865321 223466788899999999999997 455553
No 27
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.76 E-value=22 Score=35.36 Aligned_cols=103 Identities=23% Similarity=0.401 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhcCCC-------ChhhHHH--hHHHHHHHhhhhH------HHHHHHhhCCCCCCCC
Q 014591 35 LEALVSKIFSNISSLKSAYIELQAAHTPY-------DPDKIQA--ADKLVISELKNLS------ELKHFYRENNPKPACI 99 (422)
Q Consensus 35 ~eali~~lFa~vSslK~AY~qLQ~Ah~Py-------dpd~I~a--AD~~vVseL~~ls------~LK~~y~~~~~~~~~~ 99 (422)
...|-.++|...+++-- ..-.--.|| |+|-|+. -.++|-+=|+.|. +||+.|..-
T Consensus 71 GReLA~kf~eeLrg~VG---hiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~------- 140 (290)
T COG4026 71 GRELAEKFFEELRGMVG---HIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEEL------- 140 (290)
T ss_pred hHHHHHHHHHHHHHhhh---hhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH-------
Confidence 34577788887777642 333445677 4444432 2345555566555 777766542
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 100 SPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 100 ~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
...++| +.+. -..|-.++..+++|...+++.|.++...|+.||+.++.
T Consensus 141 -------kekl~E---~~~E----keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 141 -------KEKLEE---LQKE----KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred -------HHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111222 1111 23333345555666667777777777777777766554
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.45 E-value=15 Score=41.54 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHH
Q 014591 106 LAAEIQEQQSLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
|.||=+-.+.|...++.+ ++-++.+++.||.||.+||.||.++..
T Consensus 610 LsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 610 LSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667778888898888887 455677899999999999999998765
No 29
>PRK14154 heat shock protein GrpE; Provisional
Probab=71.31 E-value=5.9 Score=38.49 Aligned_cols=55 Identities=24% Similarity=0.435 Sum_probs=39.5
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEe
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYL 415 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyL 415 (422)
.+..+.+..|..|||.+.|-|..... .+..+-.|.=.+-+||+++++||+ ++|-+
T Consensus 151 GVe~I~~~~G~~FDP~~HEAv~~~~~--~~~~~gtVveV~qkGY~l~dRVLRPA~V~V 206 (208)
T PRK14154 151 GVQVINPNPGDPFDPALHEAMSVQAV--PDAKPDTIIQVLQKGYQLNGRVLRAARVIV 206 (208)
T ss_pred CCEEecCCCCCCCChhHhheeeeeCC--CCCCcCEEEEEeeCCcEeCCEEecceEEEe
Confidence 34445555699999999999965321 122345788899999999999997 45544
No 30
>PRK14161 heat shock protein GrpE; Provisional
Probab=71.31 E-value=6 Score=37.44 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=39.5
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEee
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLS 416 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs 416 (422)
+..+....|..|||.+.|-|..... + +..+-.|.=.+-+|++++++||+ ++|-++
T Consensus 120 v~~I~~~~G~~FDP~~HEAv~~~~~-~-~~~~gtVi~v~q~GY~l~dRVLRpA~V~Va 175 (178)
T PRK14161 120 IEEIKPEIGSMFDYNLHNAISQIEH-P-DHAPNSIITLMQSGYKIRDRLLRPATVQVV 175 (178)
T ss_pred CEEecCCCCCCCChHHhhhheeeCC-C-CCCcCEEEEEeeCCcEeCCEeecCceEEeC
Confidence 3444444599999999999876421 2 23456788889999999999997 455544
No 31
>PRK14145 heat shock protein GrpE; Provisional
Probab=71.28 E-value=4.8 Score=38.76 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=37.7
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEEE-EEEe
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQS-RVYL 415 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vikc-~VyL 415 (422)
+..+.. .|..|||.+.|-|..... + +..+-.|.=.+-+|++++++||+- +|-+
T Consensus 141 Ve~I~~-~Ge~FDP~~HEAv~~~~~-~-~~~~gtVv~V~qkGY~l~dRVLRPA~V~V 194 (196)
T PRK14145 141 VKEIEA-EGQIFDPYKHHAVMQEEV-E-GKQPNEIIEVFQKGYYLKDKVIRPSLVKV 194 (196)
T ss_pred CEEeCC-CCCCCCchhhheeeeeCC-C-CCCcCEEEEEeeCCcEeCCEeeccceEEe
Confidence 344443 599999999999875321 2 234567778899999999999974 4443
No 32
>PRK14148 heat shock protein GrpE; Provisional
Probab=70.51 E-value=5.2 Score=38.45 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=39.1
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEee
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLS 416 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs 416 (422)
.+..+.. .|..|||.+.|-|..... + +-.+-.|.=.+-||+++|++||+ ++|.++
T Consensus 138 Gv~~I~~-~G~~FDP~~HEAv~~~~~-~-~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va 193 (195)
T PRK14148 138 GVEELDP-KGEKFDPNLHEAMAMIPN-P-EFEDNTIFDVFQKGYMLNGRIVRAAKVVIV 193 (195)
T ss_pred CCEEeCC-CCCCCChhHhheeeeeCC-C-CCCcCEEEEEeeCCcEeCCEeeeccEEEeC
Confidence 3444544 499999999999976432 2 22456677889999999999997 455543
No 33
>PRK14162 heat shock protein GrpE; Provisional
Probab=70.01 E-value=5.5 Score=38.25 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=37.6
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEEE-EEEe
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQS-RVYL 415 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vikc-~VyL 415 (422)
+..+.. .|..|||.+.|-|..... +.+..+-.|.=.+-+|+++|+.||+. +|-+
T Consensus 138 V~~I~~-~G~~FDP~~HEAv~~~~~-~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14162 138 VTEIKA-DGEKFDPTLHQAVQTVAA-ENDDQKDHVVQVLQKGYQYKDRTLRPAMVVV 192 (194)
T ss_pred CEEeCC-CCCCCChhHhhhheeecC-CCCCCcCEEEEEeeCCcEeCCEeeecceEEe
Confidence 344444 599999999999864321 11223566778889999999999984 4544
No 34
>PRK14160 heat shock protein GrpE; Provisional
Probab=69.81 E-value=6.4 Score=38.34 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=36.1
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEEE-EEEe
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQS-RVYL 415 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vikc-~VyL 415 (422)
+..+.. .| .|||.+.|-|..... + +..+..|.-.+-||+++|++||+. +|-+
T Consensus 157 Ve~I~~-~G-~FDP~~HEAv~~~~~-~-e~~~gtVveV~qkGY~l~dRVLRpA~V~V 209 (211)
T PRK14160 157 VEEIST-EG-EFDPNLHNAVMHVED-E-NYGENEIVEVFQKGYKRGDKVIRYSMVKV 209 (211)
T ss_pred CEEeCC-CC-CCChHHhceeeeeCC-C-CCCcCeEEEEeeCCcEeCCEeeecceEEe
Confidence 333443 36 899999998875422 2 223556778899999999999984 4544
No 35
>PRK14147 heat shock protein GrpE; Provisional
Probab=69.15 E-value=5.2 Score=37.62 Aligned_cols=54 Identities=9% Similarity=0.197 Sum_probs=38.7
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEEE-EEEe
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQS-RVYL 415 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vikc-~VyL 415 (422)
.+..+.. .|..|||.+.|-|..... + +..+..|.=.+-+|+++++.||+. +|-+
T Consensus 114 Gv~~i~~-~G~~FDP~~HeAv~~~~~-~-~~~~g~Vv~v~qkGY~l~~RvLRpA~V~V 168 (172)
T PRK14147 114 GLTLLDP-VGQPFNPEHHQAISQGEA-E-GVAPGHVVQVFQKGYLLNERLLRPALVVV 168 (172)
T ss_pred CCEEeCC-CCCCCChHHhceeeeecC-C-CCCcCEEEEEeeCCcEeCCEeccCceEEe
Confidence 3455554 599999999999865321 2 224557888999999999999974 4444
No 36
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.72 E-value=83 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHh
Q 014591 36 EALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAA 71 (422)
Q Consensus 36 eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aA 71 (422)
..|+.+|.+....+=+||..|....+-|.-.+...+
T Consensus 83 GlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~ 118 (189)
T PF10211_consen 83 GLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQA 118 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999887766655444333
No 37
>PRK14141 heat shock protein GrpE; Provisional
Probab=67.65 E-value=6.1 Score=38.41 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=40.1
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeec
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSG 417 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~ 417 (422)
+..+.. .|..|||.+.|-|.... .+ +-.+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 136 V~~I~~-~Ge~FDP~~HEAv~~~~-~~-~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk 191 (209)
T PRK14141 136 VKKLDP-EGQKFDPNFHQAMFEVP-NP-DVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 191 (209)
T ss_pred CEEECC-CCCCCChHHhceeeeec-CC-CCCcCEEEEEeeCCcEeCCEeecccEEEECC
Confidence 444443 59999999999886432 12 22456788889999999999997 5777765
No 38
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.44 E-value=22 Score=32.54 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=49.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 102 QDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSE--IHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 102 ~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsE--i~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
....|..+|.+.+.=++......+.|++|+..-.++ ...|+..+.++...+..|+.||..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888888888889999888876664 578899999999999999999875
No 39
>PRK10325 heat shock protein GrpE; Provisional
Probab=66.62 E-value=6.3 Score=37.80 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=39.6
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeec
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSG 417 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~ 417 (422)
.+..+. ..|..|||.+.|-|..... + +-.+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 138 Gv~~i~-~~G~~FDP~~HEAv~~~~~-~-~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk 194 (197)
T PRK10325 138 GVEVIA-ETNVPLDPNVHQAIAMVES-D-DVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_pred cCeeeC-CCCCCCChhHhceeeeeCC-C-CCCcCeEEEEeeCCcEeCCEeccCceEEeCC
Confidence 344444 3699999999999875321 2 22345566788999999999997 5676654
No 40
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.30 E-value=21 Score=28.49 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
+.+.|.+.+..+.--|-++++|-..+-...-+|..|++.|..+..+...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777778888777766666666666666544443333
No 41
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=65.58 E-value=18 Score=33.75 Aligned_cols=30 Identities=20% Similarity=0.461 Sum_probs=28.0
Q ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 132 QNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 132 ~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+.||.|..+|..+|.+.+.+...+|++|.+
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME~~v~e 130 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEMERHVTE 130 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999887
No 42
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.56 E-value=22 Score=35.88 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCC
Q 014591 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDL 183 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~ 183 (422)
..|.++|++.++-++.-..-+.++++++..-..+|..|++.+. .++..|++|+|.. - .+|+..+|+.+.+
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~---~r~~~l~~raRAm----q---~nG~~t~Yidvil 124 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV---ERQELLKKRARAM----Q---VNGTATSYIDVIL 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----H---HcCChhHHHHHHH
Confidence 3466666666666444444444444444444444444444333 3445566666542 1 1223345777788
Q ss_pred CHHHHHHHHHH--HHHHHHHhHHHHHHHHHhcCCChHHh
Q 014591 184 TPDLFTQAVEA--AYKAIHDFSKPLINMMKAAGWDLDSA 220 (422)
Q Consensus 184 sp~~F~~~~~~--A~~si~~FaK~Li~~M~~agwdl~~a 220 (422)
+...|-..+.+ |...|-++=|-++...+.-.-+|...
T Consensus 125 ~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~k 163 (265)
T COG3883 125 NSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEK 163 (265)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88888777775 45667777788887776665555443
No 43
>PRK14155 heat shock protein GrpE; Provisional
Probab=65.36 E-value=9.3 Score=37.10 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=42.3
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeecc
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSGV 418 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~~ 418 (422)
.+..+.+..|..|||.+.|-|..... .+-.+-.|.=.+-+|++++++||+ ++|-++..
T Consensus 114 GV~~I~~~~G~~FDP~~HEAv~~~~~--~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 172 (208)
T PRK14155 114 GLKKIDPAKGDKFDPHLHQAMMEQPS--TEVAAGGVLQVMQAGYELMGRLVRPAMVAVAAK 172 (208)
T ss_pred CCceecCCCCCCCChhHhceeeeecC--CCCCcCeEEEEeeCCeEeCCEeeccceEEECCC
Confidence 45555555799999999998865321 223456788889999999999997 56766653
No 44
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=63.85 E-value=76 Score=38.05 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-HHhhcCCCChhhHHHh-HHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHH
Q 014591 35 LEALVSKIFSNISSLKSAYIE-LQAAHTPYDPDKIQAA-DKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQE 112 (422)
Q Consensus 35 ~eali~~lFa~vSslK~AY~q-LQ~Ah~Pydpd~I~aA-D~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E 112 (422)
....+..+|.-..=+-..|.. -.-.--||||..+..+ ..+...||..| ++..... .-......+.++.
T Consensus 105 Al~~Lk~lf~l~~Wf~~~Y~~~~~~~~~~F~~p~~p~~~~~~~~~~~~~l---~~~~~~~-------~~~~~~~~~~~~~ 174 (1123)
T PRK11448 105 ALMGLKLAFRLAVWFHRTYGKDWDFKPGPFVPPEDPENLLHALQQEVLTL---KQQLELQ-------AREKAQSQALAEA 174 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCcchhhhhHHHHHHH---HHHHHHh-------hhhhhhhhhhHHH
Confidence 333445555544444444433 1122346777766422 33345555533 3322100 0001112333344
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 014591 113 QQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIED 147 (422)
Q Consensus 113 ~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e 147 (422)
+..-++.++....++++++.+-+.++..|+++...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 175 QQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666665555556656555544
No 45
>PRK14139 heat shock protein GrpE; Provisional
Probab=63.18 E-value=9.1 Score=36.54 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=40.5
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeec
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSG 417 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~ 417 (422)
.+..+.. .|..|||.++|-|..... + ..+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 128 Gv~~I~~-~G~~FDP~~HEAv~~~~~--~-~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak 183 (185)
T PRK14139 128 RVVEINP-VGEKFDPHQHQAISMVPA--E-QEPNTVVAVLQKGYTIADRVLRPALVTVAA 183 (185)
T ss_pred CCceeCC-CCCCCChHHhheeeeecC--C-CCcCEEEEEeeCCcEeCCEeccCceEEeCC
Confidence 3445555 599999999999875432 2 2456788889999999999997 4565543
No 46
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.78 E-value=26 Score=38.24 Aligned_cols=98 Identities=24% Similarity=0.368 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHH
Q 014591 36 EALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQS 115 (422)
Q Consensus 36 eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ 115 (422)
+..+--||.-|-.+|.---.|= ++|+.|-++- +.+-.|.++|+....|.+ .+.+-..-+.+
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~--------e~i~ea~k~s----~~i~~l~ek~r~l~~D~n-------k~~~~~~~mk~ 323 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLY--------EKIQEAMKIS----QKIKTLREKWRALKSDSN-------KYENYVNAMKQ 323 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----HHHHHHHHHHHHHhhhHH-------HHHHHHHHHHH
Confidence 4456667777777765433331 4455544321 234566777776544322 12233334556
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 014591 116 LLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKR 152 (422)
Q Consensus 116 ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n 152 (422)
..+.|--.+++|+.++..|++||..|+++.++|....
T Consensus 324 K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 324 KSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6667777789999999999999999999998887654
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.59 E-value=29 Score=31.54 Aligned_cols=58 Identities=29% Similarity=0.351 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~ 162 (422)
.|.+|..+-+.-...++.-++.|+.+...++.||..|..++.-++.....++.+|...
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777888899999999999999999999998888888888887764
No 48
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.18 E-value=1.7e+02 Score=31.99 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=12.1
Q ss_pred CCCChhhHHHhHHHHHHHhhhhHHHHHHHh
Q 014591 61 TPYDPDKIQAADKLVISELKNLSELKHFYR 90 (422)
Q Consensus 61 ~Pydpd~I~aAD~~vVseL~~ls~LK~~y~ 90 (422)
.=|||+.+.. +-+.|..+..||+.|.
T Consensus 296 l~~dp~~L~e----le~RL~~l~~LkrKyg 321 (563)
T TIGR00634 296 LEFDPERLNE----IEERLAQIKRLKRKYG 321 (563)
T ss_pred CCCCHHHHHH----HHHHHHHHHHHHHHhC
Confidence 3455555443 3334444444555444
No 49
>PRK10869 recombination and repair protein; Provisional
Probab=61.30 E-value=2.6e+02 Score=30.82 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=71.5
Q ss_pred hHHHHHHHHhhcCCCChhhHHHhH--HHHHHHhhhhHHHHHHHhhC-CCCCCCCCCc-chhHHHHHHHHHHHHHHHHHHH
Q 014591 49 LKSAYIELQAAHTPYDPDKIQAAD--KLVISELKNLSELKHFYREN-NPKPACISPQ-DSRLAAEIQEQQSLLKTYEVMV 124 (422)
Q Consensus 49 lK~AY~qLQ~Ah~Pydpd~I~aAD--~~vVseL~~ls~LK~~y~~~-~~~~~~~~p~-~~~l~aei~E~q~ll~~ye~~~ 124 (422)
+..+.-.|+.. .=|||+-=..++ .-+..+|+.++.-=+.|... .. .|. ...+...+...+.|-|-|+..+
T Consensus 246 l~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~-----dp~~l~~ie~Rl~~l~~L~rKyg~~~ 319 (553)
T PRK10869 246 LYSAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDL-----DPNRLAELEQRLSKQISLARKHHVSP 319 (553)
T ss_pred HHHHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 44444455544 455654311222 22334455544444455543 22 233 5667788888999999998665
Q ss_pred HHHHHHHhccchH---HHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHH
Q 014591 125 KKFQSEIQNKDSE---IHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAAY-KAIH 200 (422)
Q Consensus 125 ~kL~~e~~~kDsE---i~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A~-~si~ 200 (422)
+.+-.-.+....| +......+++++....++++++... -..++.+| ++..
T Consensus 320 ~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~--------------------------A~~LS~~R~~aA~ 373 (553)
T PRK10869 320 EELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALET--------------------------AQKLHQSRQRYAK 373 (553)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHH
Confidence 4443333332222 2233344555555555555554331 12233333 5688
Q ss_pred HhHHHHHHHHHhcCC
Q 014591 201 DFSKPLINMMKAAGW 215 (422)
Q Consensus 201 ~FaK~Li~~M~~agw 215 (422)
.|++.+..+|+.-|-
T Consensus 374 ~l~~~v~~~L~~L~m 388 (553)
T PRK10869 374 ELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999987765
No 50
>PRK14163 heat shock protein GrpE; Provisional
Probab=60.95 E-value=13 Score=36.29 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=40.8
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeecc
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSGV 418 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~~ 418 (422)
+..+.. .|..|||.+-|-|..... ++ -.+-.|.=.+-+|++++++||+ ++|-++..
T Consensus 132 v~~I~~-~G~~FDP~~HEAv~~~~~-~~-~~~gtVv~v~qkGY~l~~RVLRPA~V~Vsk~ 188 (214)
T PRK14163 132 LQQFGK-EGEPFDPTIHEALMHSYA-PD-VTETTCVAILQPGYRIGERTIRPARVAVAEP 188 (214)
T ss_pred CEEeCC-CCCCCChhHhceeeeecC-CC-CCcCEEEEEeeCCcCcCCEeccCceEEECCC
Confidence 444443 699999999998865321 22 2356677889999999999997 57777764
No 51
>PRK14157 heat shock protein GrpE; Provisional
Probab=59.19 E-value=10 Score=37.34 Aligned_cols=49 Identities=33% Similarity=0.592 Sum_probs=37.2
Q ss_pred CCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeec
Q 014591 367 KGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSG 417 (422)
Q Consensus 367 rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~ 417 (422)
.|..|||.+-|-|.... +.+-.+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 175 ~Ge~FDP~~HEAV~~~~--~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Vak 224 (227)
T PRK14157 175 KGEDFDPTKHDAILHKP--DPDAEKETVDTVVEAGYRIGDRVIRAARVVVAS 224 (227)
T ss_pred CCCCCChhhhceeeeec--CCCCCcCEEEEEeeCCceeCCEeccCceEEeCC
Confidence 59999999999886532 1223467788899999999999998 4665553
No 52
>PRK14153 heat shock protein GrpE; Provisional
Probab=58.90 E-value=21 Score=34.32 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=41.1
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeec
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSG 417 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~ 417 (422)
.+..+.+. |..|||.+.|-|.... +.+-.+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 131 Gv~~I~~~-G~~FDP~~HEAv~~~~--~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak 187 (194)
T PRK14153 131 GLERIECE-GEEFDPHRHEAMMHVE--TSEVPDNTIVDVCKPGYALNSKVIRPAMVSVAR 187 (194)
T ss_pred CCeeeCCC-CCCCChhHhceeeeeC--CCCCCcCEEEEEeeCCcEeCCEEeeCcEEEECC
Confidence 45566654 9999999999886532 1222456777888999999999997 5676665
No 53
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.20 E-value=1.4e+02 Score=26.75 Aligned_cols=71 Identities=17% Similarity=0.356 Sum_probs=44.9
Q ss_pred hhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 014591 66 DKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHI 145 (422)
Q Consensus 66 d~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L 145 (422)
+++..+..-+.+--.+...|+...+.- ...+..+-+|.+.+-..........+-|++.||-||..|+++|
T Consensus 80 ~~~~~~ere~~~~~~~~~~l~~~~~~~----------~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 80 EQLEELERELASAEEKERQLQKQLKSL----------EAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666655555555555555544432 1224445556666655556666777788899999999999887
Q ss_pred H
Q 014591 146 E 146 (422)
Q Consensus 146 ~ 146 (422)
.
T Consensus 150 ~ 150 (151)
T PF11559_consen 150 N 150 (151)
T ss_pred c
Confidence 4
No 54
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=57.26 E-value=35 Score=33.64 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 014591 121 EVMVKKFQSEIQNKDSEIHQLQQHIEDANQK 151 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~ 151 (422)
|-.++.|+++++.||.+|..|...|.+++.-
T Consensus 73 e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~i 103 (272)
T KOG4552|consen 73 EQLMRTLEAHVEKRDEVIQQLQKNLKSAEVI 103 (272)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4447889999999999999999999887643
No 55
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.14 E-value=97 Score=31.37 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=32.7
Q ss_pred HHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCC
Q 014591 56 LQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENN 93 (422)
Q Consensus 56 LQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~ 93 (422)
++.||+=-||-++=+||-.-|.||-+++.+=....+..
T Consensus 61 ~tKa~IKLN~KkLY~ADGyAVkELLKia~lLy~A~~~~ 98 (267)
T PF10234_consen 61 ATKARIKLNPKKLYQADGYAVKELLKIASLLYSAMKSA 98 (267)
T ss_pred HHHhheeecHHHHHHhhHHHHHHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999998866665553
No 56
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.07 E-value=25 Score=30.25 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=46.6
Q ss_pred HHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 014591 74 LVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRV 153 (422)
Q Consensus 74 ~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~ 153 (422)
.|..||..|.+=..+|+.-++-- +.++.+.+...|+..++.-+..|..|..+++.+.....
T Consensus 38 ~v~~eL~~l~~d~~vyk~VG~vl-------------------v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 38 KALEELERLPDDTPVYKSVGNLL-------------------VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHcCCCcchhHHHhchhh-------------------heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888877677777653310 22445555666777777777777788888888888777
Q ss_pred hhhhhhhh
Q 014591 154 KLEKNLKL 161 (422)
Q Consensus 154 ~Lek~l~~ 161 (422)
+++++|+.
T Consensus 99 e~q~~l~~ 106 (110)
T TIGR02338 99 ELQEKIQE 106 (110)
T ss_pred HHHHHHHH
Confidence 77777764
No 57
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=57.03 E-value=1.5e+02 Score=34.78 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCC------------------------------
Q 014591 120 YEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKES------------------------------ 169 (422)
Q Consensus 120 ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~------------------------------ 169 (422)
|-..+..|+..+..||.+..+++.+++|......++++-+++.++...++
T Consensus 524 ~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ~~~~~~~~il~~~~~~~~q~lq~ 603 (980)
T KOG0980|consen 524 HNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQLQDDLNDPILDGSLASGIQALQN 603 (980)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34446777888889999999999999877666667766655543221100
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014591 170 -EGSGGENGFFPVDLTPDLFTQAVEAAYKAIHDFSKPLINMM 210 (422)
Q Consensus 170 -~~~~~~~~~~s~~~sp~~F~~~~~~A~~si~~FaK~Li~~M 210 (422)
...-+.+.+..-.-+|++++.+...+..++-+|.+.+-+.+
T Consensus 604 al~~ld~P~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yl 645 (980)
T KOG0980|consen 604 ALYQLDSPLHWRCLTSPDFLLSTAENASVNATQFETSFNNYL 645 (980)
T ss_pred HHHhcCCCcccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00001122333366899999999999999999999776555
No 58
>PRK00295 hypothetical protein; Provisional
Probab=56.52 E-value=56 Score=26.21 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
+.+.|.+.+..+.--|-++..|-..+-....+|..|+.+|..+..+...+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777788888887777777777777776665554444
No 59
>PRK02793 phi X174 lysis protein; Provisional
Probab=55.71 E-value=59 Score=26.37 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
.+.+.|.+.+..+.=-|-++.+|-..+-....+|..|+++|..+..+...+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367778888888877788888888888877778887777776665544443
No 60
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.38 E-value=40 Score=26.83 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHH
Q 014591 104 SRLAAEIQEQQSL 116 (422)
Q Consensus 104 ~~l~aei~E~q~l 116 (422)
+.|.+||+-.|.+
T Consensus 4 saL~~EirakQ~~ 16 (61)
T PF08826_consen 4 SALEAEIRAKQAI 16 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3577888876666
No 61
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=54.97 E-value=4.5 Score=34.36 Aligned_cols=16 Identities=31% Similarity=0.746 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhheeC
Q 014591 342 LAKLIWLLHRLAYSFE 357 (422)
Q Consensus 342 ~Ak~VWlLH~LAfSf~ 357 (422)
||+++|+|-+||.++-
T Consensus 1 MaRRlwiLslLAVtLt 16 (100)
T PF05984_consen 1 MARRLWILSLLAVTLT 16 (100)
T ss_pred CchhhHHHHHHHHHHH
Confidence 7999999999998764
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.73 E-value=1.6e+02 Score=31.45 Aligned_cols=13 Identities=8% Similarity=0.498 Sum_probs=5.6
Q ss_pred HhhhhHHHHHHHh
Q 014591 78 ELKNLSELKHFYR 90 (422)
Q Consensus 78 eL~~ls~LK~~y~ 90 (422)
++..+-.....|.
T Consensus 270 ~l~~~~~~~~~~~ 282 (562)
T PHA02562 270 KIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHhc
Confidence 3344444444443
No 63
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=54.50 E-value=1.1e+02 Score=26.41 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=52.5
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 014591 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRG--LSTKESEGSGGENGFFPVDLTPDLFTQAVEAAYKAIHDF 202 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~--ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A~~si~~F 202 (422)
-+|+.+++-=..|..-||++|.++...|..|..-|++-. ....+.. +....|..+++- ......-++.|+.=|.-.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~-~~~~~g~~~~~~-~~~l~~eLk~a~~qi~~L 81 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSL-AKLSEGGSPSGR-EAELQEELKLAREQINEL 81 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-ccCCCCCCCccc-cHHHHHHHHHHHHHHHHH
Confidence 457777777778999999999999999999998777632 2111211 111111111122 234466677777777777
Q ss_pred HHHHHHHH
Q 014591 203 SKPLINMM 210 (422)
Q Consensus 203 aK~Li~~M 210 (422)
..-++.+.
T Consensus 82 s~kv~eLq 89 (96)
T PF11365_consen 82 SGKVMELQ 89 (96)
T ss_pred hhHHHHHh
Confidence 77766654
No 64
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.18 E-value=27 Score=39.03 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 115 SLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 115 ~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.-++.++.++++|+.|++.-+.++.+|+.++..|.+++.++.++++
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555555555555555555555555554444443
No 65
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.93 E-value=1.6e+02 Score=31.76 Aligned_cols=101 Identities=12% Similarity=0.184 Sum_probs=55.1
Q ss_pred HHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 014591 45 NISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMV 124 (422)
Q Consensus 45 ~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~ 124 (422)
.|..++....+|+... .++++.-.++-++++-|..+.........+. +. .. ...+.+...++..|....
T Consensus 72 ~~~~l~~~l~~l~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~ 140 (525)
T TIGR02231 72 RLAELRKQIRELEAEL-----RDLEDRGDALKALAKFLEDIREGLTEPIKDS-AK-RN----EPDLKEWFQAFDFNGSEI 140 (525)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhccccccc-cc-cC----CCCHHHHHHHHHHHHHHH
Confidence 4445555555555433 3444555555556655555543221111100 00 00 011344555888888888
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
.+|..+++.-+.++..|+++|+++......|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88887777777777777777777766665554
No 66
>PRK14143 heat shock protein GrpE; Provisional
Probab=53.79 E-value=14 Score=36.64 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=40.1
Q ss_pred cceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeec
Q 014591 359 NVKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSG 417 (422)
Q Consensus 359 ~~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~ 417 (422)
.+..+.+ .|..|||.+.|-|.... .++ -.+-.|.=.+-+|++++++||+ ++|-++.
T Consensus 166 GV~~i~~-~G~~FDP~~HEAv~~~~-~~~-~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk 222 (238)
T PRK14143 166 GVSPMRV-VGQEFDPNLHEAVLREP-SDE-HPEDVVLEELQRGYHLGGRVLRHAMVKVSM 222 (238)
T ss_pred CCeeeCC-CCCCCChHHhheeeeec-CCC-CCcCeEEEEeeCCceeCCEecccceEEECC
Confidence 3445554 59999999999886532 122 2355677789999999999997 5676664
No 67
>PRK11637 AmiB activator; Provisional
Probab=53.21 E-value=1.1e+02 Score=32.10 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 109 EIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 109 ei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
++...+.-+...+..++.++.++...+.+|..|..+|.+++.....+++.|.
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344445555555555555555555555555444444443
No 68
>PRK04406 hypothetical protein; Provisional
Probab=53.12 E-value=64 Score=26.48 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKR 152 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n 152 (422)
+.+.|.+.+..+.=-|-+++.|-..+-...-+|..|+++|..+..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777778888888877777777777777766554433
No 69
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.94 E-value=47 Score=33.58 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014591 114 QSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 114 q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~ 162 (422)
|.-+.....-+.+++.+++..+.+|..++.++..++.....++.+|+.+
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444566666666677777777777777777777777777654
No 70
>PRK04325 hypothetical protein; Provisional
Probab=52.62 E-value=66 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
+.+.|.+.+..+.=-|-+++.|-..+-...-+|..|+.+|.-+..+...
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888887877778888888888777777777777766655444433
No 71
>PRK00736 hypothetical protein; Provisional
Probab=51.95 E-value=71 Score=25.62 Aligned_cols=49 Identities=6% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
+.+.|.+.+..+.--|-+++.|-..+-...-+|..|+++|..+..+...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666776667778888877777777777777777655554443
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.82 E-value=2.6e+02 Score=27.93 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhC
Q 014591 36 EALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYREN 92 (422)
Q Consensus 36 eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~ 92 (422)
...+.++=+-.++++.+|+.+|.+- +.+.-=....-+||+.+++=+..-..+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~-----e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIEL-----EDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666778888888888774 666666666777777776654444443
No 73
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.80 E-value=38 Score=36.84 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 014591 140 QLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 140 ~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.+.++|++++..+..|++++.
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555553
No 74
>PRK14159 heat shock protein GrpE; Provisional
Probab=51.39 E-value=22 Score=33.73 Aligned_cols=45 Identities=24% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEEE-EEEe
Q 014591 368 GSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQS-RVYL 415 (422)
Q Consensus 368 g~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vikc-~VyL 415 (422)
| .|||.+.|-|..... .+-.+-.|.-.+-+|++++++||+. +|-+
T Consensus 129 G-~FDP~~HEAv~~~~~--~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 174 (176)
T PRK14159 129 K-EFDPNLHEAMFHVDS--ENHQSGEVVQVLQKGYKIADRVIRPTKVSV 174 (176)
T ss_pred C-CCChHHhhhhheeCC--CCCCcCeEEEEeeCCcEeCCEeeecceeEe
Confidence 6 699999999865421 2234567888899999999999974 4443
No 75
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.12 E-value=1.6e+02 Score=25.20 Aligned_cols=69 Identities=17% Similarity=0.349 Sum_probs=43.3
Q ss_pred HHHhHHHHHHHhhhhH-HHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhccchHHHHHH
Q 014591 68 IQAADKLVISELKNLS-ELKHFYRENNPKPACISPQDSRLAAEIQEQQSLL----KTYEVMVKKFQSEIQNKDSEIHQLQ 142 (422)
Q Consensus 68 I~aAD~~vVseL~~ls-~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll----~~ye~~~~kL~~e~~~kDsEi~~Lr 142 (422)
+...++-|-..+++++ +|--.|..+. -+...-|= ..|+.-+++|+.++..--.|+..|+
T Consensus 6 ~~~~~~ev~~~ve~vA~eLh~~YssKH----------------E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~ 69 (87)
T PF12709_consen 6 LEESQKEVEKAVEKVARELHALYSSKH----------------ETKVKALKKSYEARWEKKVDELENENKALKRENEQLK 69 (87)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhHH----------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666665 4666777651 12222233 3455668899999888888999999
Q ss_pred HHHHHHHHHH
Q 014591 143 QHIEDANQKR 152 (422)
Q Consensus 143 ~~L~e~~~~n 152 (422)
.+|+-.....
T Consensus 70 ~~l~~e~~Ek 79 (87)
T PF12709_consen 70 KKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHH
Confidence 9887554433
No 76
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=50.81 E-value=29 Score=27.20 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=25.1
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+.+||.++...++.|..+|.+++++.....++++.++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777667666653
No 77
>PRK14146 heat shock protein GrpE; Provisional
Probab=50.73 E-value=17 Score=35.39 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=36.5
Q ss_pred CCCccccccccccccccccCCCCCCCeeEEEeeCCeeecC----eEEE-EEEEeec
Q 014591 367 KGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGG----SVIQ-SRVYLSG 417 (422)
Q Consensus 367 rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~----~vik-c~VyLs~ 417 (422)
.|..|||.+.|-|..... + +-.+..|.-.+-+|+++++ .||+ ++|-++.
T Consensus 159 ~G~~FDP~~HeAv~~~~~-~-~~~~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Vak 212 (215)
T PRK14146 159 KGEPFDPMSMEALSSEEG-D-QYSEETVIDVYQAGYYYKENEDKFTLRPARVRIGK 212 (215)
T ss_pred CCCCCChhHhceeeeecC-C-CCCcCEEEEEeeCCeEeCCccCCeeccCceEEeCC
Confidence 699999999999975421 2 2245667788999999998 5776 5676654
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=50.67 E-value=2.5e+02 Score=30.08 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=66.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHH
Q 014591 29 NQNPEALEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAA 108 (422)
Q Consensus 29 ~~~~~~~eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~a 108 (422)
..........+..|=..+..+..+..++|.... . .++ -.+++.++++..... ..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~-----~---~~~----~~~~i~el~~~i~~~--------------~~ 351 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD-----E---FNE----QSKKLLELKNKISTN--------------KQ 351 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---HHH----HHHHHHHHHHHHHHH--------------HH
Confidence 334455566777777777777777776666542 1 111 134455555544433 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 109 EIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 109 ei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.+.+...-.+..+.-+.+|+.+......++..|..+|+++.....++++....
T Consensus 352 ~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333334455566678888887777778888899999998888888877554
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.50 E-value=1.4e+02 Score=32.93 Aligned_cols=34 Identities=6% Similarity=0.197 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChHHhh
Q 014591 184 TPDLFTQAVEAAYKAIHDFSKPLINMMKAAGWDLDSAA 221 (422)
Q Consensus 184 sp~~F~~~~~~A~~si~~FaK~Li~~M~~agwdl~~a~ 221 (422)
-|+.|+..+..+...|+...+ .|.....++++.-
T Consensus 442 ip~~y~~~~~~~~~~i~~l~~----~L~~g~VNm~ai~ 475 (569)
T PRK04778 442 LPEDYLEMFFEVSDEIEALAE----ELEEKPINMEAVN 475 (569)
T ss_pred CcHHHHHHHHHHHHHHHHHHH----HhccCCCCHHHHH
Confidence 489999999999999988544 5555566665543
No 80
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.09 E-value=52 Score=31.84 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 111 QEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 111 ~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.|+|..++.-+..+.+|+.+.+.-..|+..++.+++.++..|..+.+.+..
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555567777787777777888888888888888877766543
No 81
>PRK00846 hypothetical protein; Provisional
Probab=50.07 E-value=77 Score=26.37 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
.+.+.|.+.+..+.--|.++..|-..+-....+|..|+++|.-+..+.+.++
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677788888888777888888888887777777777777766655555444
No 82
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.69 E-value=64 Score=28.92 Aligned_cols=43 Identities=12% Similarity=0.376 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 118 KTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 118 ~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.++...+.+|.+++..-...+..|+.+++++++.....+.+.+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~ 97 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKER 97 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555554444433
No 83
>PRK02119 hypothetical protein; Provisional
Probab=49.67 E-value=84 Score=25.57 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRV 153 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~ 153 (422)
.+.+.|.+.+..+.--|-++..|-..+-....+|..|+++|..+..+..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777666777777777777766677777766665544333
No 84
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=49.60 E-value=23 Score=34.44 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=31.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+++.++|+-.|++||..||..|.++...+...+.++..
T Consensus 19 Lke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~ 56 (202)
T PF06818_consen 19 LKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQE 56 (202)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 58889999999999999999999888888777766553
No 85
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.33 E-value=74 Score=27.45 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEIQNK--DSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~k--DsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+.+.+.-+...+..+.++|.++++. ..++..|+-.|.++....+.++.++.+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444445555567777777776 446777777777776666666666643
No 86
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=49.10 E-value=98 Score=33.83 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=52.0
Q ss_pred HhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHH---
Q 014591 46 ISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEV--- 122 (422)
Q Consensus 46 vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~--- 122 (422)
+--+|+-|+.||.-|. -.||--|+.| ..|..++. ..+-...||+..|.+-...|-
T Consensus 420 lkK~k~nyv~LQEry~----~eiQqKnksv-----------sqclEmdk-------~LskKeeeverLQ~lkgelEkat~ 477 (527)
T PF15066_consen 420 LKKIKANYVHLQERYM----TEIQQKNKSV-----------SQCLEMDK-------TLSKKEEEVERLQQLKGELEKATT 477 (527)
T ss_pred HHHHhhhHHHHHHHHH----HHHHHhhhHH-----------HHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999886 3344333332 33333321 112234566666665444443
Q ss_pred -HHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 014591 123 -MVKKFQSEIQNKDSEIHQLQQHIEDANQKR 152 (422)
Q Consensus 123 -~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n 152 (422)
.+..|++|-+.++-|...|.++++.-+..|
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367788888888888888888777555444
No 87
>PRK14164 heat shock protein GrpE; Provisional
Probab=48.82 E-value=17 Score=35.61 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=34.6
Q ss_pred CCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeec
Q 014591 367 KGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSG 417 (422)
Q Consensus 367 rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~ 417 (422)
.|..|||..-|-|..... + + ...|+=.+-+||++|++||+ ++|-++.
T Consensus 169 ~Ge~FDP~~HEAV~~~~~-~--~-~~~V~~V~qkGY~l~dRVLRPA~V~Vak 216 (218)
T PRK14164 169 EGDAFDPEIHEAVQDLSS-G--D-EKVLGTVLRKGYRMGDRVLRTAMVIIAD 216 (218)
T ss_pred CCCCCChhHhheeeeecC-C--C-CCEeeEEeeCCcEECCEeccCceEEeCC
Confidence 599999999998864321 1 1 33577778999999999997 4666553
No 88
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=48.41 E-value=30 Score=32.56 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=30.7
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
++|++|+..-+.||.-||+-|..-+++..+|.++|.
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLG 67 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLG 67 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 567778888888999999999999999999988873
No 89
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=48.03 E-value=38 Score=40.12 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+....||++..+.++++---+.+++.++....+.|..++...+.+......+++..++
T Consensus 333 ~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~ 390 (1074)
T KOG0250|consen 333 DAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNN 390 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666666666666666666666666666666666666666666666665543
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.44 E-value=55 Score=35.14 Aligned_cols=66 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccchHHHHHHHHHHHHHHHH
Q 014591 80 KNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEI-------QNKDSEIHQLQQHIEDANQKR 152 (422)
Q Consensus 80 ~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~-------~~kDsEi~~Lr~~L~e~~~~n 152 (422)
++|...++-+-.. ..+|.+++.-....+..+++|+.++ ..=..++..+++.|++++...
T Consensus 38 ~~l~q~q~ei~~~--------------~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAAL--------------EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 5666666554443 3344444444444444444444444 333334556666666666666
Q ss_pred Hhhhhhh
Q 014591 153 VKLEKNL 159 (422)
Q Consensus 153 ~~Lek~l 159 (422)
..|+..-
T Consensus 104 ~~l~~q~ 110 (420)
T COG4942 104 NALEVQE 110 (420)
T ss_pred HHHHHHH
Confidence 6655443
No 91
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.92 E-value=37 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 119 TYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 119 ~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+.+.+...|+.+++.-+.+|..|+.++.++.....++++.|..
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777778888888888888888888888888765
No 92
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=46.68 E-value=73 Score=30.48 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=15.2
Q ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhh
Q 014591 131 IQNKDSEIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 131 ~~~kDsEi~~Lr~~L~e~~~~n~~Lek~ 158 (422)
.+.+|+||.+|+.....++......|-+
T Consensus 154 ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666665555555555544433
No 93
>PRK14142 heat shock protein GrpE; Provisional
Probab=46.47 E-value=23 Score=34.93 Aligned_cols=51 Identities=24% Similarity=0.426 Sum_probs=37.0
Q ss_pred CCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEeecc
Q 014591 367 KGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLSGV 418 (422)
Q Consensus 367 rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs~~ 418 (422)
.|..|||.+-|-|.... .++......|.-.+-+|+++++.||+ ++|-++..
T Consensus 132 ~Ge~FDP~~HEAv~~ve-~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~ 183 (223)
T PRK14142 132 EGEDFDPVLHEAVQHEG-DGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDT 183 (223)
T ss_pred CCCCCChhhhceeeeec-CCCCCCCCEEEEEecCCcEeCCEeccCceEEECCC
Confidence 59999999999885422 11112234688888999999999997 57777653
No 94
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=45.98 E-value=1.2e+02 Score=24.03 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKD-SEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kD-sEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
-.+.|++.+..+..-+..++.++-|++.-. ++-..+..+|........+|++.|+
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566777777777777888888887776 4667788888888888777777664
No 95
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.95 E-value=92 Score=31.99 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=56.2
Q ss_pred HHHHhh-hhHHHHHHHhhC-----CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014591 75 VISELK-NLSELKHFYREN-----NPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 75 vVseL~-~ls~LK~~y~~~-----~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
-+.+|+ .|+++-..|++- ++| ...+.|.-+|+-..-.|-+.+-++-.|+.+++.|-.++.++|..++.+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLD-----Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L 152 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLD-----NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL 152 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 788899999886 222 123445666666666666666667788888887777777777777777
Q ss_pred HHHHHhhhhhhhhc
Q 014591 149 NQKRVKLEKNLKLR 162 (422)
Q Consensus 149 ~~~n~~Lek~l~~~ 162 (422)
......|...|.++
T Consensus 153 ~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 153 REELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666655
No 96
>PRK14149 heat shock protein GrpE; Provisional
Probab=45.72 E-value=33 Score=32.97 Aligned_cols=53 Identities=11% Similarity=0.307 Sum_probs=36.2
Q ss_pred ceeEEecCCCccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEE-EEEEee
Q 014591 360 VKVFQVNKGSEFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQ-SRVYLS 416 (422)
Q Consensus 360 ~~if~v~rg~~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vik-c~VyLs 416 (422)
+..+.. -| .|||.+.|-|..... + +..+-.|.=.+-||++++++||+ ++|-++
T Consensus 135 V~~I~~-~G-~FDP~~HEAv~~v~~-~-~~~~gtVv~V~QkGY~l~dRVLRPA~V~Va 188 (191)
T PRK14149 135 IEGIEC-LE-EFDPNFHNAIMQVKS-E-EKENGKIVQVLQQGYKYKGRVLRPAMVSIA 188 (191)
T ss_pred CEEeCC-CC-CCChHHhheeeeecC-C-CCCcCEEEEEeeCCcEeCCEEeeccEEEeC
Confidence 344443 36 599999998865321 2 23456677889999999999997 455544
No 97
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=44.97 E-value=38 Score=31.49 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 014591 120 YEVMVKKFQSEIQNKDSEIHQLQQHIEDANQK 151 (422)
Q Consensus 120 ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~ 151 (422)
+|.++.-|+.|++.|..+|..+|+.++++.+.
T Consensus 129 RetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~ 160 (162)
T PF05983_consen 129 RETLIMMMEEQLEEKREEIEEIRKVCEKAREV 160 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999887664
No 98
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.75 E-value=1.5e+02 Score=26.79 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=38.0
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 014591 68 IQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIED 147 (422)
Q Consensus 68 I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e 147 (422)
++.|=..|-.+|+.+++==..-++. .+.....+...++|+..+. +..+.++..-..++...+..++.
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkh------LsqRId~vd~klDe~~ei~-------~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKH------LSQRIDRVDDKLDEQKEIS-------KQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455566667777666543322222 0112334555555555553 33333443333344455555555
Q ss_pred HHHHHHhhhhhhh
Q 014591 148 ANQKRVKLEKNLK 160 (422)
Q Consensus 148 ~~~~n~~Lek~l~ 160 (422)
....-..||.+|.
T Consensus 108 v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 108 VQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 99
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.07 E-value=76 Score=33.07 Aligned_cols=87 Identities=22% Similarity=0.349 Sum_probs=51.4
Q ss_pred HHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 014591 44 SNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVM 123 (422)
Q Consensus 44 a~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~ 123 (422)
..+..+..-|-+||..|.= ...-|+.++++.+.+.+. |.-|..-++..-..
T Consensus 4 eEW~eL~~efq~Lqethr~------------Y~qKleel~~lQ~~C~ss-----------------I~~QkkrLk~L~~s 54 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRS------------YKQKLEELSKLQDKCSSS-----------------ISHQKKRLKELKKS 54 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 3455677778888877753 355666666666655543 33333344444445
Q ss_pred HHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 124 VKKFQSEIQNKD-SEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 124 ~~kL~~e~~~kD-sEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
+++++......+ ..|..|++++.+.......+|.-|
T Consensus 55 Lk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 55 LKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 566655433322 256777777777777777777554
No 100
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.80 E-value=62 Score=33.16 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=15.5
Q ss_pred HHHHHHHHhccch--HHHHHHHHHH
Q 014591 124 VKKFQSEIQNKDS--EIHQLQQHIE 146 (422)
Q Consensus 124 ~~kL~~e~~~kDs--Ei~~Lr~~L~ 146 (422)
--+.|+|+..|++ ||..||+-++
T Consensus 110 CHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 110 CHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667766766 7777777665
No 101
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=43.25 E-value=3.9e+02 Score=27.55 Aligned_cols=131 Identities=14% Similarity=0.156 Sum_probs=77.3
Q ss_pred HHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCC-CCCCc----chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014591 56 LQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPA-CISPQ----DSRLAAEIQEQQSLLKTYEVMVKKFQSE 130 (422)
Q Consensus 56 LQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~-~~~p~----~~~l~aei~E~q~ll~~ye~~~~kL~~e 130 (422)
||.|-+--+|-|+=+||..-|+||.+...| +|.-++-++. ..+|+ .+.+...|+|.+.. +.|-.+
T Consensus 2 ~~~a~i~~np~kly~a~~~~~~el~~~~~l--l~~~~~~~~~~d~~~~~~q~~~~i~~k~~e~r~~--------r~lat~ 71 (338)
T KOG3647|consen 2 VTKAAIRINPRKLYAAAAVTAAELQKVTRL--LTSPGQNEADNDEEDQRDQYRSLIGDKIEELRKA--------RELATD 71 (338)
T ss_pred CcchhhccCHHHHHHHhHHHHHHHHHHHHH--HhCcCcCCCCCCcchHHHHHHHHHHHHHHHHHHH--------HHHHhh
Confidence 467778899999999999999999987666 4444432222 23555 33456667775544 778888
Q ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014591 131 IQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAAYKAIHDFSKPLINMM 210 (422)
Q Consensus 131 ~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A~~si~~FaK~Li~~M 210 (422)
+-.+-+-|-+|-.+- ++.+ ..++..... ++. .-.-+.++..|..+|..=....-.++
T Consensus 72 l~~~g~~i~e~ls~~-~~~~--~~~~~aa~R----------------ple----l~e~Ekvlk~aIq~i~~~~q~~~~~L 128 (338)
T KOG3647|consen 72 LTQRGTTICEMLSKE-LLHK--ESLMSAAQR----------------PLE----LLEVEKVLKSAIQAIQVRLQSSRAQL 128 (338)
T ss_pred ccccchHHHHHHHHH-HHHH--HHHHHHHcC----------------Ccc----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777766653221 1111 111111110 111 22334566667777766666666677
Q ss_pred HhcCCChHH
Q 014591 211 KAAGWDLDS 219 (422)
Q Consensus 211 ~~agwdl~~ 219 (422)
.+...|..+
T Consensus 129 nnvasdea~ 137 (338)
T KOG3647|consen 129 NNVASDEAA 137 (338)
T ss_pred HHHhhHHHH
Confidence 666666544
No 102
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=43.15 E-value=91 Score=37.05 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=46.7
Q ss_pred hHHHHHHHhhhhHHHHHHHhhCCCC-CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 014591 71 ADKLVISELKNLSELKHFYRENNPK-PACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDAN 149 (422)
Q Consensus 71 AD~~vVseL~~ls~LK~~y~~~~~~-~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~ 149 (422)
|-+.+.+.+..+..|-..|+....+ ..+.+|..... .+-..+.--+.+.+.-+++|+.|++.|-.-..+||.+|+.++
T Consensus 133 ~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~-~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddle 211 (1195)
T KOG4643|consen 133 ASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVV-KKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLE 211 (1195)
T ss_pred HHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666677777765322 22234432110 111112223455566677788888777777777777777777
Q ss_pred HHHHhhh
Q 014591 150 QKRVKLE 156 (422)
Q Consensus 150 ~~n~~Le 156 (422)
..+.+|.
T Consensus 212 ae~~klr 218 (1195)
T KOG4643|consen 212 AEISKLR 218 (1195)
T ss_pred HHHHHHH
Confidence 6666543
No 103
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.97 E-value=70 Score=34.75 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 112 EQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 112 E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+|+.....++..-+.++.++.++|..|..|.++|.++.-.... +.+|+
T Consensus 411 nq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~-qqklk 458 (493)
T KOG0804|consen 411 NQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA-QQKLK 458 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh-hhhhh
Confidence 3444555666667777888899999999999999998876654 34443
No 104
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.92 E-value=2.1e+02 Score=26.09 Aligned_cols=94 Identities=18% Similarity=0.319 Sum_probs=52.7
Q ss_pred hHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCc-----chhHHHHHHHHHHHHHHHH--------------HHHHHH
Q 014591 67 KIQAADKLVISELKNLSELKHFYRENNPKPACISPQ-----DSRLAAEIQEQQSLLKTYE--------------VMVKKF 127 (422)
Q Consensus 67 ~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~-----~~~l~aei~E~q~ll~~ye--------------~~~~kL 127 (422)
.....+.+|..=...+|.||.-|..=+-...+-.|. ...+-+|++....+=+-|- +.+.++
T Consensus 6 ~~~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~ 85 (131)
T PF04859_consen 6 RAAAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQ 85 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHH
Confidence 344455555555689999999999876544433333 3334556665544444332 224555
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 128 QSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 128 ~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
++.++..+.-+..|+.+++.=.+....|.++|.
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~ 118 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREKLD 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666655555555555554443
No 105
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=42.83 E-value=70 Score=28.30 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=24.6
Q ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 132 QNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 132 ~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
-.+.+++..|+.++++|.+....||.++.
T Consensus 79 ~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 79 VARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778899999999999999999987764
No 106
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=42.28 E-value=61 Score=31.56 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~ 162 (422)
....+.+.+.-+.+-..-++.++.|+..+.+|+..||.++..++..+..|...+...
T Consensus 50 ~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 50 KESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 344566666666666667889999999999999999999999999999998887764
No 107
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.27 E-value=1.2e+02 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=24.1
Q ss_pred HhhcCCCChhhHHHhHHHHHHHhhhhHHHHHH
Q 014591 57 QAAHTPYDPDKIQAADKLVISELKNLSELKHF 88 (422)
Q Consensus 57 Q~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~ 88 (422)
|....|..||+.+.+|.+.=.=-.+...||+.
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqq 69 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQ 69 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999998877666666666653
No 108
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=42.00 E-value=1.4e+02 Score=27.01 Aligned_cols=55 Identities=27% Similarity=0.345 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCC
Q 014591 115 SLLKTYEVMVKKFQSEI-QNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKES 169 (422)
Q Consensus 115 ~ll~~ye~~~~kL~~e~-~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~ 169 (422)
+.++..+....+|+.+. ..-.+|+.-|=--|.++..++.+..+||+.-|..+.+.
T Consensus 62 ~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSdd 117 (136)
T PF04871_consen 62 SEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSDD 117 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccCC
Confidence 33344445566676665 45566888888889999999999999999998766543
No 109
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.66 E-value=2.4e+02 Score=30.40 Aligned_cols=46 Identities=9% Similarity=0.246 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQK 151 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~ 151 (422)
|..+|.++..-+++-+..+.+.+..+...+..|..+...|..+...
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555444433
No 110
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.40 E-value=91 Score=30.41 Aligned_cols=50 Identities=24% Similarity=0.453 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
|.++++....-+...+.-.++|++.+.....+|..|.++++++..-...|
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333344455555555555555555555555555444443
No 111
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=41.17 E-value=1e+02 Score=35.67 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=53.3
Q ss_pred hHHHhHHHHHHHhhhhHHHHHH--HhhCC--CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 014591 67 KIQAADKLVISELKNLSELKHF--YRENN--PKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQ 142 (422)
Q Consensus 67 ~I~aAD~~vVseL~~ls~LK~~--y~~~~--~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr 142 (422)
++.+=-+-.|.|+|++-|+-|. |...+ .+.....+-...+. -++.+-+-++|..++|||+|++.-++--..||
T Consensus 43 ~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~---~p~~~~i~dle~~l~klE~el~eln~n~~~L~ 119 (829)
T KOG2189|consen 43 DVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPP---APPPREIIDLEEQLEKLESELRELNANKEALK 119 (829)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCC---CCCchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444455668899999998664 44331 11111100000000 11334566777888999999988888888888
Q ss_pred HHHHHHHHHHHhhhh
Q 014591 143 QHIEDANQKRVKLEK 157 (422)
Q Consensus 143 ~~L~e~~~~n~~Lek 157 (422)
.++-++.....-|+|
T Consensus 120 ~n~~eL~E~~~vl~~ 134 (829)
T KOG2189|consen 120 ANYNELLELKYVLEK 134 (829)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888777766654
No 112
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=41.12 E-value=91 Score=28.83 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=14.4
Q ss_pred HHHHhhhhHHHHHHHhhC
Q 014591 75 VISELKNLSELKHFYREN 92 (422)
Q Consensus 75 vVseL~~ls~LK~~y~~~ 92 (422)
++.-..+++.|+++|..-
T Consensus 18 ~~~~~~kl~kl~r~Y~~l 35 (151)
T PF14584_consen 18 IIILNIKLRKLKRRYDAL 35 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678899999999876
No 113
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=41.11 E-value=1.8e+02 Score=31.93 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=66.7
Q ss_pred CChhhHHHhH---HHHHHHhhhhHHHHHHHhhCCCCCCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Q 014591 63 YDPDKIQAAD---KLVISELKNLSELKHFYRENNPKPACISPQ-DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEI 138 (422)
Q Consensus 63 ydpd~I~aAD---~~vVseL~~ls~LK~~y~~~~~~~~~~~p~-~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi 138 (422)
++++.|..== ..+++.|.. +.+++++.=+ .||. +++|.+.++...+...-|....+.++.....=-.++
T Consensus 397 ~t~~~i~~ml~~V~~ii~~Lt~-~~~~~L~~Ik------~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~ 469 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIISQLTN-PRTQHLFMIK------SSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQ 469 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888776543 334444443 3445555533 3466 888999999999998888888877777777767789
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh
Q 014591 139 HQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 139 ~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
..|+.+|+.+....+.|.+-+-.
T Consensus 470 ~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 470 QELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765543
No 114
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.87 E-value=1.1e+02 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=21.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
+..|+.++..+|..|..+-.+|.++......+
T Consensus 31 I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 31 IQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788888877777766666665554444
No 115
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.77 E-value=1.9e+02 Score=27.12 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
|.....-++.-...+..|+.|+..-..+..-|.+++..++..|..|=+|+-
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334446777777777777888888888888888888877754
No 116
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=40.68 E-value=68 Score=24.86 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 122 VMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 122 ~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
-+..+|++|-+.+.-+-...+..|.++...|..|...|..
T Consensus 8 ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 8 ELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred HHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888898888888889999999999999999887764
No 117
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.54 E-value=74 Score=31.59 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=21.9
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~ 158 (422)
.-.|+.+|+.-..||.+||..++++.-....+.+|
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566666666666777777666666666555543
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.63 E-value=2.5e+02 Score=31.33 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 014591 186 DLFTQAVEAAYKAIHDFSKPLINM 209 (422)
Q Consensus 186 ~~F~~~~~~A~~si~~FaK~Li~~ 209 (422)
.........++..+..|-..+...
T Consensus 479 ~~~~~~~~~~~~~l~~~~~~l~~~ 502 (650)
T TIGR03185 479 ERAITIADKAKKTLKEFREKLLER 502 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444443
No 119
>PHA03011 hypothetical protein; Provisional
Probab=39.28 E-value=1.2e+02 Score=26.81 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=55.3
Q ss_pred cCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH---HHHHHHHHhccch
Q 014591 60 HTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVM---VKKFQSEIQNKDS 136 (422)
Q Consensus 60 h~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~---~~kL~~e~~~kDs 136 (422)
-.||....+..-|.--.+-|.--.+----|... |-++.-.+.+.|.++-.| |+..|.-. .+.|+-=++..|.
T Consensus 25 ~p~y~sN~LnkfddEYLanL~f~P~qi~dfk~G--D~Nai~e~ldeL~~qYN~---L~dEYn~i~Ne~k~~~~iIQdn~d 99 (120)
T PHA03011 25 IPPYESNILNKFDDEYLANLIFEPEQIFDFKEG--DINAIIEILDELIAQYNE---LLDEYNLIENEIKDLEIIIQDNDD 99 (120)
T ss_pred CCcccchHHHhccHHHHHhhhcCHHHHhhcccc--cHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchH
Confidence 357777777777766666666555443333332 211111223344444444 66666444 5667777788999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 014591 137 EIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 137 Ei~~Lr~~L~e~~~~n~~L 155 (422)
||..||.+++.+......+
T Consensus 100 ~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 100 EIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999887765543
No 120
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=39.00 E-value=71 Score=32.77 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014591 109 EIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 109 ei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
|-+..-+-+...+...++|+.++....-||..||+-+.|-
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445557777778877777888888766543
No 121
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.90 E-value=1.6e+02 Score=23.98 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 115 SLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 115 ~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
+++.|+..+ +.+|+.+...-..+...|+.+...+......-..||
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666555 455555555544555555555554444444444444
No 122
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.75 E-value=4e+02 Score=26.01 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKD---------SEIHQLQQHIEDANQKRVKLEKNLKLRG 163 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kD---------sEi~~Lr~~L~e~~~~n~~Lek~l~~~~ 163 (422)
+..+....+.-++..++..++|.+-++.-+ .|+.+.+.+|+.++.....|+++..-+.
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~st 196 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYST 196 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEE
Confidence 445555555566666666666666554322 2566667777777777777777776665
No 123
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.25 E-value=5.9e+02 Score=27.83 Aligned_cols=119 Identities=20% Similarity=0.260 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCc---chhHHH
Q 014591 32 PEALEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQ---DSRLAA 108 (422)
Q Consensus 32 ~~~~eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~---~~~l~a 108 (422)
++.-|.++..|=++||-.++ -+|+|+| .+..|-+-|-.|+.+|-+..+..+....- ..+|+ .-.+-+
T Consensus 340 ~q~sE~ll~tlq~~iSqaq~-~vq~qma-------~lv~a~e~i~~e~~rl~q~nd~l~~~~~l--~t~~Qq~e~~~lp~ 409 (542)
T KOG0993|consen 340 RQHSEDLLVTLQAEISQAQS-EVQKQMA-------RLVVASETIADEDSRLRQINDLLTTVGEL--ETQVQQAEVQNLPA 409 (542)
T ss_pred HHhhHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccchhHhhhhcchh
Confidence 44557788889999998886 5899998 46777888889999999999988876331 12233 223444
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHH---hccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 109 EIQEQQSLLKTYE-VMVKKFQSEI---QNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 109 ei~E~q~ll~~ye-~~~~kL~~e~---~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
-+.+.+.+++.|- .....|.+.- +.--.||..|+..|++..-...+||..|.
T Consensus 410 ave~l~ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~ 465 (542)
T KOG0993|consen 410 AVEQLAQLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLD 465 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665553 2233333321 11123788999999988888888887765
No 124
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.20 E-value=70 Score=24.98 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=20.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+.+|+.+++.-..+...|+.+++.+......+|+..+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3555556666566666666666665344444555444
No 125
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.04 E-value=1e+02 Score=24.70 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhc-CCCC
Q 014591 121 EVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLR-GLST 166 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~-~ls~ 166 (422)
...+.+++.+++..++|...|+.++..+.+ ...+|+.-+.. ||..
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~~lgM~~ 75 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKKQLGMKL 75 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhcCCCC
Confidence 334566777777777777777777776665 34456555543 5543
No 126
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=37.02 E-value=1.1e+02 Score=30.35 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 136 SEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 136 sEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
..|..|+.+|+.+...|..|+++|..
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHH
Confidence 34556666666666777777777654
No 127
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.92 E-value=5.3e+02 Score=32.25 Aligned_cols=129 Identities=15% Similarity=0.188 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHH----------hhhhHHHHHH-----HhhCCCCC
Q 014591 32 PEALEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISE----------LKNLSELKHF-----YRENNPKP 96 (422)
Q Consensus 32 ~~~~eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVse----------L~~ls~LK~~-----y~~~~~~~ 96 (422)
....+..+.+..+.+..|..-+..|+ |||+.+..+-.-+-.- +..|++|-++ |-+....-
T Consensus 906 ~~~a~~y~~~~~~~L~qLE~~l~~L~-----~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l 980 (1486)
T PRK04863 906 AEEAKRFVQQHGNALAQLEPIVSVLQ-----SDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEML 980 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHh
Confidence 33445678888888888888777776 7887776554443332 2334444221 11111100
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCC
Q 014591 97 ACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLS 165 (422)
Q Consensus 97 ~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls 165 (422)
...+--+..+..+|...++.-+......++.+.+.....+++..++.+++.++....+++..|..-|++
T Consensus 981 ~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~ 1049 (1486)
T PRK04863 981 AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVP 1049 (1486)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 111222444555555555555555555677777777777777888888887777777777777766543
No 128
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.57 E-value=2e+02 Score=30.27 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHH
Q 014591 121 EVMVKKFQSEIQNKDSEIHQLQQHIED 147 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~Lr~~L~e 147 (422)
+++.++||.|+..-+..|+-|+.+.+|
T Consensus 252 ~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 252 VAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444445555544444444455555444
No 129
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=36.56 E-value=1.3e+02 Score=27.66 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 116 LLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 116 ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.+..|-.+++.++++++..+.|+.+|...-...+.+..+|..-|..
T Consensus 41 K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 41 KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666778888888888888888877777777777766655443
No 130
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.55 E-value=93 Score=29.36 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=33.4
Q ss_pred HHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 115 SLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 115 ~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
..|.+|... .+.|+.|.+....|+..|+.++..|+..+.+|++++.
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455443 5667777777777888888888888888888887764
No 131
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.49 E-value=1.9e+02 Score=27.91 Aligned_cols=21 Identities=19% Similarity=0.416 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 014591 140 QLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 140 ~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+|.+++.+|...++..++||.
T Consensus 120 emQe~i~~L~kev~~~~erl~ 140 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445455555555554
No 132
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=36.01 E-value=2e+02 Score=28.81 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=63.0
Q ss_pred hhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCc-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 014591 65 PDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQ-DSRL-AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQ 142 (422)
Q Consensus 65 pd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~-~~~l-~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr 142 (422)
.++|.+.-+.+-.||+..-++-.+|..---+.. .+|. .+.+ ..-+.|.=--++.||+.++.|.+++..-..+|..+.
T Consensus 4 ~~a~~~t~~~i~~eL~~~~~l~~~yta~l~~~~-~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~ 82 (281)
T PF12018_consen 4 QEAIPATTEHIDTELEEAQELCYRYTAVLEKQS-QSPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELI 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999888876411110 0122 1111 122344344468899999999999999888888888
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 014591 143 QHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 143 ~~L~e~~~~n~~Lek~l~~~ 162 (422)
.+++ ....+|..-+..+
T Consensus 83 ~~~~---~~l~~L~~tv~~r 99 (281)
T PF12018_consen 83 KRFE---AQLEKLKETVKSR 99 (281)
T ss_pred HHHH---HHHHHHHHHHhcc
Confidence 8776 4445555556554
No 133
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.73 E-value=1.3e+02 Score=27.52 Aligned_cols=78 Identities=24% Similarity=0.328 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCChhhHHHhHHHHHHHhh-hhHHHHHHHhhC--CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014591 53 YIELQAAHTPYDPDKIQAADKLVISELK-NLSELKHFYREN--NPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQS 129 (422)
Q Consensus 53 Y~qLQ~Ah~Pydpd~I~aAD~~vVseL~-~ls~LK~~y~~~--~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~ 129 (422)
|.-.|..=---+++.+..-|.- +.+|+ .|.+|+..+..- ........|....|..+|.+.+.-++.++.-+..|++
T Consensus 59 Y~~~Q~~~~~~s~eel~~ld~e-i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 59 YFANQDELEVPSPEELAELDAE-IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred EeeCccccCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556654333467777777766 44553 445554444332 1111123466666777777766666666666666665
Q ss_pred HH
Q 014591 130 EI 131 (422)
Q Consensus 130 e~ 131 (422)
..
T Consensus 138 ~~ 139 (169)
T PF07106_consen 138 GS 139 (169)
T ss_pred CC
Confidence 43
No 134
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.74 E-value=1.7e+02 Score=23.26 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 014591 108 AEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRV 153 (422)
Q Consensus 108 aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~ 153 (422)
.++.+...-++..+..+.+||.....-+.+|..+.++|+++...+.
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556666777766667777777777776665543
No 135
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=34.64 E-value=2.4e+02 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014591 117 LKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 117 l~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
+..|..--..++..+...=+|+..+|.++-+++..-.++
T Consensus 20 ~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 20 ANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444333
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.41 E-value=3.3e+02 Score=24.09 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHH
Q 014591 36 EALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQS 115 (422)
Q Consensus 36 eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ 115 (422)
+....++-....-++.=-...+.||-=|.-+-+.-|+. ++.|+.||.-+-.. ..+|.+.+.
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-----~~~L~~lr~e~~~~--------------~~~~~~l~~ 80 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-----IKELQQLREELQEL--------------QQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 33444555555556666667778888888888877765 34555555544432 222333222
Q ss_pred HHHHHHHHHHHHHH----HHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 116 LLKTYEVMVKKFQS----EIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 116 ll~~ye~~~~kL~~----e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
-..+-...+...+. +-..-+.||..++.++++|...|.-|-..|-
T Consensus 81 ~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 81 EAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222222222 2222334788899999999999998877663
No 137
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.35 E-value=1.2e+02 Score=29.42 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~ 158 (422)
..+|+..+...+.+|..|+++.+++...+..+..+
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555554444444444433
No 138
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=34.16 E-value=2.8e+02 Score=25.01 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014591 134 KDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAAYKAIHDFSKPLINMM 210 (422)
Q Consensus 134 kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A~~si~~FaK~Li~~M 210 (422)
||.-+.+|-.+|..|...|+.|.++|++++=+. .. +-+..+||..=...+..+ +..|++.-...+
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~-------~~--p~~~~LTp~qKe~~I~s~---~~~Lss~A~~KI 65 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPG-------PS--PDDEVLTPAQKEAMITSA---VSKLSSQASKKI 65 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT----------S---TT--B--HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCC-------CC--CCccccChHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344566677778899999999999999853100 00 111367787666666554 444555444444
No 139
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.12 E-value=1.5e+02 Score=22.92 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=14.8
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
..|+.++..-.++...|+..+..+...+..|.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555444444
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.04 E-value=2.1e+02 Score=27.20 Aligned_cols=15 Identities=7% Similarity=0.332 Sum_probs=12.2
Q ss_pred ccchhhHHHHhHHHH
Q 014591 234 AHKKYAFESHICQRM 248 (422)
Q Consensus 234 ~h~kyalEA~v~~~M 248 (422)
.+.-|.+++|+++.+
T Consensus 155 TDNI~~l~~~~~~k~ 169 (188)
T PF03962_consen 155 TDNIFSLKSYLKKKF 169 (188)
T ss_pred HhhHHHHHHHHHHhc
Confidence 456799999999974
No 141
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.04 E-value=2.1e+02 Score=23.65 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEK 157 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek 157 (422)
.+.+.|.|...-+.-=|.++.+|-..+-...-.|+.++.+|+.+..+...++.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35566666666666666777777777777777788888888877776665543
No 142
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.03 E-value=3.7e+02 Score=27.43 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHHHhhh
Q 014591 31 NPEALEALVSKIFSNISSL 49 (422)
Q Consensus 31 ~~~~~eali~~lFa~vSsl 49 (422)
+...-.++|.-|-+-|+-|
T Consensus 120 S~~~RS~yLe~Lc~IIqeL 138 (269)
T PF05278_consen 120 SQQFRSYYLECLCDIIQEL 138 (269)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4555566777777776665
No 143
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.68 E-value=6e+02 Score=26.96 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=44.8
Q ss_pred hhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhccchHHHHHHHHHH
Q 014591 81 NLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEV--------------MVKKFQSEIQNKDSEIHQLQQHIE 146 (422)
Q Consensus 81 ~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~--------------~~~kL~~e~~~kDsEi~~Lr~~L~ 146 (422)
.+.+|..+|..+ +|..-.+.++|++.+..++.... ....|+.++..-++++..|+.++.
T Consensus 262 ~l~~l~~~y~~~-------hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 334 (498)
T TIGR03007 262 QLDALRLRYTDK-------HPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVA 334 (498)
T ss_pred HHHHHHHHhccc-------ChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788765 46666677777776665543311 123355555555666667777777
Q ss_pred HHHHHHHhhhhhhh
Q 014591 147 DANQKRVKLEKNLK 160 (422)
Q Consensus 147 e~~~~n~~Lek~l~ 160 (422)
.+.....+++.++.
T Consensus 335 ~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 335 ELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666654
No 144
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.03 E-value=89 Score=26.51 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=17.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
...|+..+..-+.+|..|..+++++.....+++.+|+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445554444444444443
No 145
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=32.90 E-value=27 Score=32.89 Aligned_cols=38 Identities=21% Similarity=0.493 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 014591 103 DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHI 145 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L 145 (422)
+..|+.||+|...| .+.+++|+.|++.-..|+ .+++++
T Consensus 16 nalLE~ELdEKE~L----~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 16 NALLESELDEKENL----REEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHH----HHCH---------------------
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 35677888886655 344555555555444444 444444
No 146
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=32.82 E-value=2.2e+02 Score=30.05 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=24.1
Q ss_pred cchHHHHH-HHHHHHHHHHHHhhhhhhhhc
Q 014591 134 KDSEIHQL-QQHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 134 kDsEi~~L-r~~L~e~~~~n~~Lek~l~~~ 162 (422)
+|.|+..| +++|.+++.+...||++|.--
T Consensus 73 ~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 73 KDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68887776 888999999999999998764
No 147
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.24 E-value=1e+02 Score=23.80 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 014591 115 SLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKR 152 (422)
Q Consensus 115 ~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n 152 (422)
..+...+..+..|+.+...-..++..|+.++..|...|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555666666666666667777777777666554
No 148
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=32.16 E-value=1.3e+02 Score=34.30 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=46.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHh--------ccc--hHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 101 PQDSRLAAEIQEQQSLLKTYEVMVKK-----------FQSEIQ--------NKD--SEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 101 p~~~~l~aei~E~q~ll~~ye~~~~k-----------L~~e~~--------~kD--sEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
=|++.|..++.+|...+++.|..+.. ||.|+= +.| +||.+||-+|..+++...+-||++
T Consensus 125 LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~ 204 (861)
T KOG1899|consen 125 LQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKL 204 (861)
T ss_pred ehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 46888999999999999999887533 343332 222 288899999999988888888887
Q ss_pred hhc
Q 014591 160 KLR 162 (422)
Q Consensus 160 ~~~ 162 (422)
+.+
T Consensus 205 R~s 207 (861)
T KOG1899|consen 205 RLS 207 (861)
T ss_pred HhH
Confidence 753
No 149
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=32.10 E-value=1.7e+02 Score=23.97 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 014591 137 EIHQLQQHIEDANQKRVKLEK 157 (422)
Q Consensus 137 Ei~~Lr~~L~e~~~~n~~Lek 157 (422)
.+..+|++|+.|+.+...||+
T Consensus 58 ~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666666654
No 150
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.00 E-value=78 Score=31.53 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 122 VMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 122 ~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.-..+||.|++.-..+|..||.+++.+...|-+|=+|++-
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3378899999999999999999999999999999999886
No 151
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=31.97 E-value=76 Score=30.76 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=32.1
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
++|..|+..-+.||.-||+-|..-++.+.+|+.||.
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578888888889999999999999999999998873
No 152
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=31.95 E-value=3.5e+02 Score=24.48 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=66.7
Q ss_pred HHHHHhhcCC-CChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH--HHHHHH
Q 014591 53 YIELQAAHTP-YDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVM--VKKFQS 129 (422)
Q Consensus 53 Y~qLQ~Ah~P-ydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~--~~kL~~ 129 (422)
|+.-|.+|.| +.+++++-.-.+......+++..-.-|.-. . .++.|.--+-=.---.+.|..- +.+|++
T Consensus 3 n~a~~~~~~~~q~~~a~q~~~~vl~k~~~~~t~~EKvly~~-~-------~va~L~vai~ii~~q~~~yqvq~ei~~Le~ 74 (120)
T COG4839 3 NVAYQAAKPDKQQRQAEQPKKQVLRKKRKKFTKVEKVLYTT-L-------AVAALVVAISIISVQTKAYQVQGEITDLES 74 (120)
T ss_pred hHHHhhcCcccccccccCccchHHHHHHHHhhhHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445666655 677888888888888888888764433322 0 1111211122222233445444 578999
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC
Q 014591 130 EIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLST 166 (422)
Q Consensus 130 e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~ 166 (422)
.|.....|.+.|+.+..||.+.-+-|+.. +..||+-
T Consensus 75 kIs~q~~e~~dlkqeV~dLss~eRIldiA-kk~gLkl 110 (120)
T COG4839 75 KISEQKTENDDLKQEVKDLSSPERILDIA-KKAGLKL 110 (120)
T ss_pred HHHHHHhhhhhHHHHHHHhccHHHHHHHH-HHccccC
Confidence 99999999999999999998887776544 3456653
No 153
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.89 E-value=1.6e+02 Score=32.86 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 014591 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
..+..++++.+.-++..+.-.++++.++...+.++..+..+++++..
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677766666666666666666665555555555555544433
No 154
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=31.87 E-value=1.7e+02 Score=29.34 Aligned_cols=32 Identities=28% Similarity=0.627 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhh
Q 014591 36 EALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELK 80 (422)
Q Consensus 36 eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~ 80 (422)
.-||..||+.+...... |=||| ||.+|-..|+
T Consensus 6 ~qLI~~lf~RL~~ae~~---------prD~e----Ae~lI~~~~~ 37 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ---------PRDPE----AEALIAQALA 37 (247)
T ss_pred HHHHHHHHHHHHhccCC---------CCCHH----HHHHHHHHHH
Confidence 46888999887766544 77776 5666655543
No 155
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.67 E-value=18 Score=34.16 Aligned_cols=32 Identities=25% Similarity=0.560 Sum_probs=9.8
Q ss_pred HHHHHhccch---HHHHHHHHHHHHHHHHHhhhhhh
Q 014591 127 FQSEIQNKDS---EIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 127 L~~e~~~kDs---Ei~~Lr~~L~e~~~~n~~Lek~l 159 (422)
||.||+.|+. ++.+||.+|.+|.... .+.+|+
T Consensus 19 LE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 19 LESELDEKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 7888888886 7888999998888877 444443
No 156
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=31.52 E-value=8.3e+02 Score=28.38 Aligned_cols=6 Identities=17% Similarity=0.728 Sum_probs=2.5
Q ss_pred eeEEEe
Q 014591 393 TVGLMV 398 (422)
Q Consensus 393 ~V~ftV 398 (422)
.+|++-
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 344443
No 157
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.39 E-value=1.1e+02 Score=25.85 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=5.6
Q ss_pred HHHHhhhhHHHH
Q 014591 75 VISELKNLSELK 86 (422)
Q Consensus 75 vVseL~~ls~LK 86 (422)
|+.|+++|-+--
T Consensus 3 V~~eId~lEekl 14 (85)
T PF15188_consen 3 VAKEIDGLEEKL 14 (85)
T ss_pred HHHHHhhHHHHH
Confidence 444555554433
No 158
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.29 E-value=3.6e+02 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 014591 118 KTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 118 ~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
++.|.-+++|+.|++.||.++..|..++.++..
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666655555555544443
No 159
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.82 E-value=4.3e+02 Score=31.86 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=15.1
Q ss_pred hhHHHhHHHHHHHhhhhHHHHHHHhhC
Q 014591 66 DKIQAADKLVISELKNLSELKHFYREN 92 (422)
Q Consensus 66 d~I~aAD~~vVseL~~ls~LK~~y~~~ 92 (422)
+.|..|=+.|..=.+...++|..|+..
T Consensus 337 ~Ei~~~r~~~~~~~re~~~~~~~~~~~ 363 (1074)
T KOG0250|consen 337 EEIEEARKDLDDLRREVNDLKEEIREI 363 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555543
No 160
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.81 E-value=2.7e+02 Score=23.37 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEI-QNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~-~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+.|.+.|=+..+..+.+..+.- +.-..+|..|+.+...+...|..|.+++.
T Consensus 48 ~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 48 LKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666655543322 22334799999999999999999988763
No 161
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.72 E-value=1.6e+02 Score=25.34 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=16.0
Q ss_pred hhHHHhHHHHHHHhhhhHHHHHHHhhC
Q 014591 66 DKIQAADKLVISELKNLSELKHFYREN 92 (422)
Q Consensus 66 d~I~aAD~~vVseL~~ls~LK~~y~~~ 92 (422)
+.|..-++.+...=++|+.+.......
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556555555555556666666655543
No 162
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.69 E-value=65 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=17.2
Q ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 132 QNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 132 ~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
...+.+|..|+.+++++...|..|++.+..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666655544
No 163
>PRK14156 heat shock protein GrpE; Provisional
Probab=30.46 E-value=61 Score=30.78 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=32.1
Q ss_pred ccccccccccccccccCCCCCCCeeEEEeeCCeeecCeEEEE-EEEe
Q 014591 370 EFSEVYMESVIKNLIIDEDDQKPTVGLMVMPGFWIGGSVIQS-RVYL 415 (422)
Q Consensus 370 ~F~~~YMEsV~~~~~~~~~~~~~~V~ftV~PGF~vg~~vikc-~VyL 415 (422)
.|||.+.|-|..... +.+-.+-.|.=.+-+|+++|+.||+. +|-+
T Consensus 130 ~FDP~~HEAv~~~~~-~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 175 (177)
T PRK14156 130 SFDHNLHMAVQTLPA-DDEHPADSIAQVFQKGYKLHERLLRPAMVVV 175 (177)
T ss_pred CCChhHhhcceeecC-CCCCCcCEEEEEeeCCcEeCCEEeecceeEe
Confidence 799999998865321 12224566778889999999999974 4443
No 164
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=30.27 E-value=1.4e+02 Score=27.44 Aligned_cols=55 Identities=29% Similarity=0.346 Sum_probs=39.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 100 SPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 100 ~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
-|++..|-..|.|.|+. -++.-.|+..-.+-...|+++||.|+.....||+=|+.
T Consensus 5 eP~iE~LInrInelQQa-------KKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnk 59 (134)
T PF15233_consen 5 EPQIEDLINRINELQQA-------KKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNK 59 (134)
T ss_pred cchHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 37777788888887775 46666666655556677888888888777777765554
No 165
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=30.22 E-value=1.4e+02 Score=33.54 Aligned_cols=54 Identities=28% Similarity=0.471 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
..|+++.|.-+......+.+++.+++...+++..+.+++.+....+.++|+.+.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666777777766666777777777777777777775544
No 166
>PHA03155 hypothetical protein; Provisional
Probab=30.20 E-value=3.2e+02 Score=24.51 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 014591 135 DSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEAAY 196 (422)
Q Consensus 135 DsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~A~ 196 (422)
|.-+.+|-.+|..|...|+.|.++|++.|- ..+ ..+||..=...+..+.
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~-p~d------------~~LT~~qKea~I~s~v 55 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGN-PED------------ELLTPAQKDAIINSLV 55 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCC-CCc------------cccCHHHHHHHHHHHH
Confidence 445666777788899999999999998651 111 2578876666655443
No 167
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.17 E-value=1.8e+02 Score=29.59 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
.++.+..+.....|......|+.++...++++..++.++..+......+++.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555556666666666666666666666666666555555555444
No 168
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.99 E-value=1.6e+02 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=18.0
Q ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 132 QNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 132 ~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
...+.||..|+++|+..+.....|.|+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577777777777666666666654
No 169
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.95 E-value=97 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=25.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
..+|++.|+.-=..|.-|+-+++|+..+|..|.....
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666555677777777777777777776544
No 170
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.71 E-value=4.9e+02 Score=24.64 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=30.7
Q ss_pred HHHHHHHhhhHHHHHHHHhhcCCCCh----hhHHHhHHHHHHHhh
Q 014591 40 SKIFSNISSLKSAYIELQAAHTPYDP----DKIQAADKLVISELK 80 (422)
Q Consensus 40 ~~lFa~vSslK~AY~qLQ~Ah~Pydp----d~I~aAD~~vVseL~ 80 (422)
++.|.+||-+= |..|=.--+|=|- |+|--||.-+|++|.
T Consensus 6 ~~fyl~vs~If--~~ll~~~a~g~D~~~~ld~~~~~d~~l~~~l~ 48 (174)
T COG4904 6 PTFYLGVSNIF--SALLLSKATGDDIDDGLDDIPPADEKLVAELK 48 (174)
T ss_pred hHHHHHHHHHH--HHHcchhhcCcchhhhhhcCCchhhHHHHHHH
Confidence 46777887776 7788888899999 666669998888775
No 171
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.62 E-value=2.3e+02 Score=29.09 Aligned_cols=52 Identities=21% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Q 014591 107 AAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 107 ~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~ 158 (422)
..++++.+.-++.-+..+++.+.++..-+.++..|+.++++.......|+..
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555555555555555555555443
No 172
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=29.58 E-value=8.2e+02 Score=30.16 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=22.9
Q ss_pred HHHHHhhhHHHHHHHHhhcC----CCChhhHHHhHHHH
Q 014591 42 IFSNISSLKSAYIELQAAHT----PYDPDKIQAADKLV 75 (422)
Q Consensus 42 lFa~vSslK~AY~qLQ~Ah~----Pydpd~I~aAD~~v 75 (422)
+=+....+..+..+++.|-. ||+++....+..++
T Consensus 816 l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL 853 (1353)
T TIGR02680 816 AAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLAL 853 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Confidence 33444455666666666554 99999999876665
No 173
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=29.24 E-value=36 Score=24.46 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCChHHhhhcc
Q 014591 205 PLINMMKAAGWDLDSAANSI 224 (422)
Q Consensus 205 ~Li~~M~~agwdl~~a~~~i 224 (422)
.-+..++.++|||..|++..
T Consensus 17 ~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 17 VAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34577899999999999875
No 174
>PRK11546 zraP zinc resistance protein; Provisional
Probab=28.36 E-value=4e+02 Score=24.64 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEIQNKDS 136 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDs 136 (422)
....|++.+.|..-...|..++.+|..
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ 75 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRY 75 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666555444
No 175
>PF15456 Uds1: Up-regulated During Septation
Probab=28.05 E-value=4e+02 Score=23.86 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=43.3
Q ss_pred HHHHH----HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 014591 119 TYEVM----VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGLSTKESEGSGGENGFFPVDLTPDLFTQAVEA 194 (422)
Q Consensus 119 ~ye~~----~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~ls~~~~~~~~~~~~~~s~~~sp~~F~~~~~~ 194 (422)
.|||+ |+.|+.|++.-+.-|..+|.+|. ++++....-..|.....+.... + .++ .-+...=...+..
T Consensus 15 ~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~-~------~~~-~~~~~~~eeel~~ 85 (124)
T PF15456_consen 15 EFEILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRR-A------RFS-RESSLKAEEELAE 85 (124)
T ss_pred cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccc-c------CCC-cchHHHHHHHHHH
Confidence 46665 67788888888888888888876 5555544444443321111110 0 011 1223333455666
Q ss_pred HHHHHHHhHHHHH
Q 014591 195 AYKAIHDFSKPLI 207 (422)
Q Consensus 195 A~~si~~FaK~Li 207 (422)
+.+.|..++.-|.
T Consensus 86 ~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 86 SDRKCEELAQELW 98 (124)
T ss_pred HHhhHHHHHHHHH
Confidence 6666666665554
No 176
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=28.01 E-value=1.4e+02 Score=26.91 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=24.8
Q ss_pred hCCCCCCCCCCc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 91 ENNPKPACISPQ----DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 91 ~~~~~~~~~~p~----~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
.++|||...-|- -..|...++-|+..++.+...++.+...+..-...-.....+|+++.++...|..|+
T Consensus 16 ~~nPdP~~~~Pv~i~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 16 RDNPDPSRLIPVPIIGFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCcCCcCeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777444332 234566666666666666666666666554433334444555666666666666554
No 177
>smart00338 BRLZ basic region leucin zipper.
Probab=27.74 E-value=1.1e+02 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=16.5
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Q 014591 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEK 157 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek 157 (422)
..|+.++..-..+...|+.+++.+...+..|..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555443
No 178
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=27.52 E-value=3.3e+02 Score=21.99 Aligned_cols=77 Identities=21% Similarity=0.367 Sum_probs=51.4
Q ss_pred HHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014591 75 VISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 75 vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
.-.+|..|...+..|... ..... ...-...+...+..+..++..+..++.++..-+.++..++..|.+.....+.
T Consensus 17 ~~~~l~~L~~~~~~~~~~-~~~~~----~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQ-LSESQ----QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT----------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-Hhhcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777554 21111 1222355666777777777888888888888888888888888888777776
Q ss_pred hh
Q 014591 155 LE 156 (422)
Q Consensus 155 Le 156 (422)
++
T Consensus 92 ~e 93 (123)
T PF02050_consen 92 LE 93 (123)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 179
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=27.49 E-value=2.9e+02 Score=27.38 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=60.3
Q ss_pred hHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHH
Q 014591 71 ADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQN-KDSEIHQLQQHIEDAN 149 (422)
Q Consensus 71 AD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~-kDsEi~~Lr~~L~e~~ 149 (422)
|=..|++|+..++..+...-+. . .+-....+..=+++.+.+-|.|...-.+|+.|... -.+++..+|.+=+++.
T Consensus 66 sW~~vl~qte~iA~~~~~~aE~-l----~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~ 140 (234)
T cd07686 66 SWLHMVQQTEQLSKIMKTHAEE-L----NSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLT 140 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5566889999999988877765 2 11112334444577788889998888999999864 7788888888877766
Q ss_pred HHHHhhhhhhhh
Q 014591 150 QKRVKLEKNLKL 161 (422)
Q Consensus 150 ~~n~~Lek~l~~ 161 (422)
..-....++...
T Consensus 141 ~~~e~ar~K~~~ 152 (234)
T cd07686 141 KEVNSAKEKYKD 152 (234)
T ss_pred HHHHHHHHHHHH
Confidence 665555555443
No 180
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.40 E-value=80 Score=29.47 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 014591 118 KTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 118 ~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
+.....+++|+.|++.++.|+..||++.+.++.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555788888888888888888888776654
No 181
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.40 E-value=1.8e+02 Score=35.38 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
.+..+|+..+.-+++-...+..++.+...+..+|..|+.++.++.....++.+++
T Consensus 826 ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l 880 (1311)
T TIGR00606 826 QVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL 880 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444444444455555555555566666555555444444444333
No 182
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=27.06 E-value=2.4e+02 Score=27.04 Aligned_cols=51 Identities=29% Similarity=0.443 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHhhh
Q 014591 106 LAAEIQEQQSLLKTYEVM---VKKFQSEIQNK-------DSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~---~~kL~~e~~~k-------DsEi~~Lr~~L~e~~~~n~~Le 156 (422)
+.+.|.+.=++-..+... .++++.++..+ |++|..|..+|.++.+....+.
T Consensus 91 l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 91 LRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555433333333222 35555555544 6777777777777777655544
No 183
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.02 E-value=5e+02 Score=31.74 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHH
Q 014591 34 ALEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISE 78 (422)
Q Consensus 34 ~~eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVse 78 (422)
.++....++=..-.++++.-..+|..-.||..+.+++.-++=|+|
T Consensus 462 ~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vae 506 (1293)
T KOG0996|consen 462 ELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAE 506 (1293)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778889999999999999999999999998887765
No 184
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=26.96 E-value=2e+02 Score=29.88 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 103 DSRLAAEIQEQQSLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
..+|.-|+++.+.|.+.++.. .++|++++..|...+..|..+|..+.....-+.+.+
T Consensus 93 l~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 93 LARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 456777777777776666554 567777777777777777777777777666666665
No 185
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=26.85 E-value=2.1e+02 Score=27.48 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHhhhhhh
Q 014591 119 TYEVMVKKFQSEIQNKDS-----EIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 119 ~ye~~~~kL~~e~~~kDs-----Ei~~Lr~~L~e~~~~n~~Lek~l 159 (422)
..+.-+.+|+.++..++. +|..|+.+|+++.+.++.+|..|
T Consensus 116 ~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 116 ILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457888888876443 78899999999999998888654
No 186
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=26.61 E-value=3e+02 Score=23.28 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 132 QNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 132 ~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
..=|.+|..|-+-..+|....++||.|++.
T Consensus 69 d~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 69 DQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334447777877788888888888888763
No 187
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.41 E-value=5.1e+02 Score=23.77 Aligned_cols=41 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 014591 115 SLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKL 155 (422)
Q Consensus 115 ~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~L 155 (422)
+.++.++.-++.++...+....|+..|+.++.+.......+
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 163 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQEL 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554333333333333
No 188
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=4e+02 Score=30.69 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=53.9
Q ss_pred HHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014591 75 VISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 75 vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
+..||+.+...+..+.+. ...+.......|.-+.-++..++.++.++.....|+.-++.++..++..+..
T Consensus 543 l~~el~~~~~~le~~kk~----------~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~ 612 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKK----------AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELER 612 (698)
T ss_pred hHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544 1123334555666677777778888888888888999999998888888888
Q ss_pred hhhhhhh
Q 014591 155 LEKNLKL 161 (422)
Q Consensus 155 Lek~l~~ 161 (422)
|.++|..
T Consensus 613 L~~kle~ 619 (698)
T KOG0978|consen 613 LKRKLER 619 (698)
T ss_pred HHHHHHH
Confidence 8888765
No 189
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=26.21 E-value=4.1e+02 Score=22.83 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=44.6
Q ss_pred HHHHHhhhhHHHHHHHhhCC---CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 014591 74 LVISELKNLSELKHFYRENN---PKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 74 ~vVseL~~ls~LK~~y~~~~---~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
..-..|..|.+.+..|...- +.. ..+ ...+...+.-+......+...+.++..-..++...|..|.+...
T Consensus 31 ~~~~~l~~l~~~~~~~~~~~~~~~~~-g~~------~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~ 103 (141)
T TIGR02473 31 RLETQLQQLIKYREEYEQQALEKVGA-GTS------ALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARR 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776531 111 111 12344455555555555666666666666667777777777766
Q ss_pred HHHhhh
Q 014591 151 KRVKLE 156 (422)
Q Consensus 151 ~n~~Le 156 (422)
..+.+|
T Consensus 104 ~~k~le 109 (141)
T TIGR02473 104 ELKALE 109 (141)
T ss_pred HHHHHH
Confidence 666665
No 190
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.97 E-value=2.4e+02 Score=24.19 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
++++..-..-=.-.+.+=......++.||..|+..|..+.+....++++|..
T Consensus 55 lken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 55 LKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.79 E-value=2.4e+02 Score=27.53 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=15.2
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
++.|+..++..+..+..+++++++++.....++
T Consensus 65 ~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 65 IENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 192
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.75 E-value=2.1e+02 Score=26.59 Aligned_cols=43 Identities=26% Similarity=0.443 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 119 TYEVMVKKFQSEIQN-KDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 119 ~ye~~~~kL~~e~~~-kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.+.+...+|..++.. +++++..||...+.+.....+|+.+|+.
T Consensus 55 ~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 55 LFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555533 3345555555555555555555544443
No 193
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.40 E-value=3.1e+02 Score=23.04 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHH
Q 014591 182 DLTPDLFTQAVEAAY 196 (422)
Q Consensus 182 ~~sp~~F~~~~~~A~ 196 (422)
.+||+-|...++...
T Consensus 47 ~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 47 KMTPEELAAFLRAMK 61 (83)
T ss_pred CCCHHHHHHHHHHHH
Confidence 567777777666543
No 194
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.34 E-value=2.4e+02 Score=33.75 Aligned_cols=11 Identities=18% Similarity=0.027 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 014591 106 LAAEIQEQQSL 116 (422)
Q Consensus 106 l~aei~E~q~l 116 (422)
..+|.+++..+
T Consensus 439 ~e~e~~~~~~~ 449 (1041)
T KOG0243|consen 439 EEKEKKEMAEQ 449 (1041)
T ss_pred HHHHHHHHHHH
Confidence 44455555555
No 195
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.21 E-value=2.4e+02 Score=30.19 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.+..|++|.+.-...++.-+++|+.++.. |+..+.+.|+|..-+..+||+.++.
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~~---e~~~~~~~LqEEr~R~erLEeqlNd 269 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQYQR---EYQFILEALQEERYRYERLEEQLND 269 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35555666555555555556666665443 5667777777777777777777765
No 196
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=25.11 E-value=87 Score=29.30 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 121 EVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 121 e~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
||..++....++..-.||..|+.+|...+..|++.||.++.
T Consensus 62 eI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd 102 (158)
T PF03112_consen 62 EIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKD 102 (158)
T ss_pred hccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 33344444455555668899999999999888888888765
No 197
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=25.04 E-value=1.6e+02 Score=37.49 Aligned_cols=51 Identities=24% Similarity=0.422 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
+..++++....++++|.+..+++.|....+.+|..|+..+..+...+++|.
T Consensus 934 ~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ 984 (1930)
T KOG0161|consen 934 LEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS 984 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888889999999999999998888888888777777666665554
No 198
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=24.96 E-value=5.7e+02 Score=24.64 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=29.7
Q ss_pred HHHHHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014591 115 SLLKTYEVM-----VKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 115 ~ll~~ye~~-----~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
.||..|+.- ...|+..+..-+.++..+|+++++++..++.
T Consensus 124 eLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~ 168 (221)
T PF05700_consen 124 ELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKR 168 (221)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777654 5777777777788888888888888876543
No 199
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.85 E-value=2.1e+02 Score=31.01 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=26.5
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+||..=+--...||.+|+.+|.+.+.+..+|+|+.+
T Consensus 151 eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~ 186 (542)
T KOG0993|consen 151 EKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKH 186 (542)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhc
Confidence 444444445566888999999999888888887755
No 200
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=24.70 E-value=2.9e+02 Score=22.25 Aligned_cols=40 Identities=25% Similarity=0.558 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014591 79 LKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQN 133 (422)
Q Consensus 79 L~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~ 133 (422)
-+.+.++++.|.+. | |...|-+ |.+.|..++.+++..+++
T Consensus 13 kK~i~~v~~FF~~D--------P----lGqkIa~---l~kdw~~~~~~~r~KiR~ 52 (64)
T PF05596_consen 13 KKWIEEVRNFFYED--------P----LGQKIAQ---LAKDWNEICQEVRKKIRA 52 (64)
T ss_pred HHHHHHHHHHhccC--------c----hHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35678889977765 3 3334444 888888888888877765
No 201
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.69 E-value=2.2e+02 Score=28.17 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=9.0
Q ss_pred hHHHHHHHHhhccC
Q 014591 267 NKESFFHQFLALRE 280 (422)
Q Consensus 267 ~r~~~F~~F~~lk~ 280 (422)
-+++|+++. +|+
T Consensus 196 ~C~sC~qqI--HRN 207 (230)
T PF10146_consen 196 TCQSCHQQI--HRN 207 (230)
T ss_pred hhHhHHHHH--hcC
Confidence 578888888 664
No 202
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.36 E-value=2.9e+02 Score=27.56 Aligned_cols=55 Identities=35% Similarity=0.494 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhccch-------HHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014591 108 AEIQEQQSLLKTY-EVMVKKFQSEIQNKDS-------EIHQLQQHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 108 aei~E~q~ll~~y-e~~~~kL~~e~~~kDs-------Ei~~Lr~~L~e~~~~n~~Lek~l~~~ 162 (422)
..+++.+..+..| +++-++|-.+|..|-+ +|..|+.+|.+......++.+.|+..
T Consensus 31 ~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~ 93 (291)
T PF10475_consen 31 EDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSA 93 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666667777 6667888889877765 57788888888888888888887764
No 203
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.31 E-value=2.4e+02 Score=25.90 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=7.9
Q ss_pred HHHHhhcCCCChhhHHH
Q 014591 54 IELQAAHTPYDPDKIQA 70 (422)
Q Consensus 54 ~qLQ~Ah~Pydpd~I~a 70 (422)
+.....-.++.|..+..
T Consensus 60 ~~~~~~~~~~~~~~~~~ 76 (191)
T PF04156_consen 60 LLSKRPVQSVRPQQIEE 76 (191)
T ss_pred HHHccccccchHHHHHh
Confidence 33344444555555544
No 204
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.28 E-value=1.5e+02 Score=26.08 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=24.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 123 MVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 123 ~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+...|+..++.=+.+|..|..+.+.+.....+++..|+.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566777777777777777777766665
No 205
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.16 E-value=1.7e+02 Score=29.44 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKR 152 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n 152 (422)
.+.++.+|.|.-++..+.-...|+...+..--|+..|+.+++|+.-+.
T Consensus 160 ele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 160 ELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 344555555555555555555555555555556666666666655543
No 206
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.06 E-value=3.4e+02 Score=22.87 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=15.9
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 125 KKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 125 ~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
.+|+.+++..+.+-.+|-++|+.....+.+||
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 34455555545555555555555544444444
No 207
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.00 E-value=4e+02 Score=27.45 Aligned_cols=62 Identities=11% Similarity=0.227 Sum_probs=36.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 014591 103 DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLRGL 164 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~~l 164 (422)
+..|-.++.+++..+...--..++...+++.-.-.+..|+.+++++.........-|...||
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGl 175 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGL 175 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCe
Confidence 33444455555544444333333444444444455677777777777777777777777784
No 208
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=23.93 E-value=4.1e+02 Score=25.82 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=20.5
Q ss_pred cccchhhHHHHhHHHHhcCCC--CCCcCCC
Q 014591 233 RAHKKYAFESHICQRMFTGFQ--QEDFSVK 260 (422)
Q Consensus 233 ~~h~kyalEA~v~~~MF~gFe--~~~F~~~ 260 (422)
..+.-+-+-+|+|+.||..=+ +..|++.
T Consensus 171 ~tDnI~ilidy~c~kf~~~~~qir~~fgIP 200 (209)
T COG5124 171 TTDNIEILIDYLCKKFFLKPEQIRKEFGIP 200 (209)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHhcCCC
Confidence 345678999999999998654 3556654
No 209
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.76 E-value=8.1e+02 Score=25.51 Aligned_cols=51 Identities=18% Similarity=0.403 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchH----------------------HHHHHHHHHHHHHHHHhhhhhhhhc
Q 014591 112 EQQSLLKTYEVMVKKFQSEIQNKDSE----------------------IHQLQQHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 112 E~q~ll~~ye~~~~kL~~e~~~kDsE----------------------i~~Lr~~L~e~~~~n~~Lek~l~~~ 162 (422)
||+.++.....-+.+|+++...+..+ |-.|..+++.+...+..|+.+|.+.
T Consensus 132 EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 132 EQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45555555555555565555444333 3355566667777777777787763
No 210
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.56 E-value=1e+03 Score=29.90 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcC
Q 014591 192 VEAAYKAIHDFSKPLINMMKAAG 214 (422)
Q Consensus 192 ~~~A~~si~~FaK~Li~~M~~ag 214 (422)
+..+..++.+|-+.+-..++..|
T Consensus 465 L~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 465 LSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555566666655555554
No 211
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.47 E-value=3e+02 Score=28.67 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
|.....++++-++.|+.++++++.. +.+.+.-++...+.||+|+.
T Consensus 341 le~~q~~l~~~l~~~~~~L~~ve~~----------~~~N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 341 LESQQSDLQSQLKKWEELLNKVEEK----------FKENMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555555554 34445555555566777664
No 212
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=23.42 E-value=1.9e+02 Score=28.52 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Q 014591 116 LLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNL 159 (422)
Q Consensus 116 ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l 159 (422)
-++.|+..+.+|+.+.+.|+.|...|+.+|.+......+-..+|
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555899999999999999999999998888766666665
No 213
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.35 E-value=7.7e+02 Score=24.78 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhcCCCChhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHH
Q 014591 35 LEALVSKIFSNISSLKSAYIELQAAHTPYDPDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQ 114 (422)
Q Consensus 35 ~eali~~lFa~vSslK~AY~qLQ~Ah~Pydpd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q 114 (422)
+++.|...|..---=+.+|++ |.++. ++.+-.|+..++.. +.|++++-
T Consensus 31 ~D~f~q~~r~~~~nS~~efar-~lS~~-----------------~~e~e~l~~~l~et--------------ene~~~~n 78 (246)
T KOG4657|consen 31 IDSFIQSPRRRSMNSLVEFAR-ALSQS-----------------QVELENLKADLRET--------------ENELVKVN 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHHH--------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 115 SLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 115 ~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.|+..-+...-+++.++....+|+..|+..++.+......+.+=|.+
T Consensus 79 eL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~ 125 (246)
T KOG4657|consen 79 ELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQ 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 214
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.25 E-value=44 Score=37.01 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=27.0
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 129 SEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 129 ~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.|+....+.|..||.+|.+++..|..|++++..
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~d 328 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIED 328 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHH
Confidence 566666667888999999999999999998865
No 215
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.16 E-value=3.2e+02 Score=32.54 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHhhhhhhh
Q 014591 112 EQQSLLKTYEVMVKKFQSEIQNKDSE----IHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 112 E~q~ll~~ye~~~~kL~~e~~~kDsE----i~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
+..+.++-|+.-++.+++.++.|+.| ++.|..+++++++.+..|..|++
T Consensus 998 ~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~ 1050 (1243)
T KOG0971|consen 998 DADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLN 1050 (1243)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 44556666666677777888888775 66789999999999999999984
No 216
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=23.03 E-value=2.4e+02 Score=27.07 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=38.8
Q ss_pred Cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 014591 101 PQ-DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQ 150 (422)
Q Consensus 101 p~-~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~ 150 (422)
|+ ......||+..+..++-+....+.++..++.+|.||..++.+|..+..
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 556677888888888888888888888888888888887777765544
No 217
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.03 E-value=2.1e+02 Score=31.52 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQN---KDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~---kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.|..+++-|-..+++|.+.++.+.+.+.. .++. --.|++++.+++.+|++|+-+
T Consensus 338 dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad---~~~KI~~~k~r~~~Ls~RiLR 394 (508)
T KOG3091|consen 338 DLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHAD---AVAKIEEAKNRHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888899999998888876632 3321 123455555555666666443
No 218
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.98 E-value=7.8e+02 Score=29.66 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q 014591 36 EALVSKIFSNISSLKSAYIE 55 (422)
Q Consensus 36 eali~~lFa~vSslK~AY~q 55 (422)
+.-|..+.+.++.++..+.+
T Consensus 764 ~~~l~~~~~~~~~l~~~~~~ 783 (1163)
T COG1196 764 EEELESLEEALAKLKEEIEE 783 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 219
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.83 E-value=1.9e+02 Score=25.18 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=22.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEK 157 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek 157 (422)
+..|+.+++....++..|+.++.+.....+.|.+
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666777777777776666666644
No 220
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=22.76 E-value=1.9e+02 Score=31.73 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 103 DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 103 ~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
.+.|+++|.|...++ +.|+.+ ..-||..||..|+|...-+.+|+
T Consensus 571 ~delr~qi~el~~iv-------e~lk~~---~~kel~kl~~dleeek~mr~~le 614 (627)
T KOG4348|consen 571 LDELRAQIIELLCIV-------EALKKD---HGKELEKLRKDLEEEKTMRSNLE 614 (627)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHhhhH
Confidence 344666666644442 222222 22378889999988877777666
No 221
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.73 E-value=3.3e+02 Score=26.40 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
|..++.....-|+.+++...+.......-...|..|..+|.++.......|.++.
T Consensus 146 LE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~ 200 (237)
T PF00261_consen 146 LEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVK 200 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444444444444566777777666666666555544
No 222
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=22.56 E-value=4.4e+02 Score=26.09 Aligned_cols=60 Identities=25% Similarity=0.442 Sum_probs=34.6
Q ss_pred HHHhhhhHHHHHHHhhCCCCCCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014591 76 ISELKNLSELKHFYRENNPKPACISPQ-DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 76 VseL~~ls~LK~~y~~~~~~~~~~~p~-~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
+++|+++-.|+..|...+. +. .+.+..+ +...+..+++++..++.....+..+++-.+.+
T Consensus 2 i~~~~~~~~~r~~~~~~~~------~~~L~~i~~~-------~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~ 62 (243)
T PF07160_consen 2 ISELKELLSLRNMGQDPNL------KDTLSKIDQE-------VSAIEELLNDIEQELQREEEALPKLKELMESS 62 (243)
T ss_dssp HHHHHHHHHHHHHHHSHHH------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCh------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999988854321 11 2223333 44445556777776666555555555444333
No 223
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.43 E-value=1.7e+02 Score=27.12 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=37.1
Q ss_pred HHHHHHHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014591 113 QQSLLKTYEVM-----VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 113 ~q~ll~~ye~~-----~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~ 162 (422)
.+++-|.|..+ .+.||.-+...-.++..++++++++......++++++.+
T Consensus 25 l~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (151)
T PF14584_consen 25 LRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNC 79 (151)
T ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666666 346777777777788888888888888888888887765
No 224
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.33 E-value=3.2e+02 Score=31.54 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014591 111 QEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 111 ~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
|.+=+.||.-.+-.+-|+-||+....||..|+..|+|+.+-..-
T Consensus 110 QKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~i 153 (717)
T PF09730_consen 110 QKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEI 153 (717)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556677778888888999999999888776643
No 225
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.23 E-value=4.9e+02 Score=23.53 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhccch-------HHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 119 TYEVMVKKFQSEIQNKDS-------EIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 119 ~ye~~~~kL~~e~~~kDs-------Ei~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
+=.-.+..|++|++.... .|..|+.....+.+.+++.++++++
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~ 87 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHP 87 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 333345566666655444 3555555555556666666666443
No 226
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.21 E-value=3.3e+02 Score=26.97 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~ 158 (422)
+..++...+.-+.++..-..+..+....-+.+|..||..|++.+..+..|+.+
T Consensus 73 l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 73 LELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 33344443333333333333333333333445556666665555555544433
No 227
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.16 E-value=2.6e+02 Score=31.13 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------HHHHHHHHHHHHHHHHHhhh
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDS-------EIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDs-------Ei~~Lr~~L~e~~~~n~~Le 156 (422)
|..++++.+.-|.+..-...+|+.+.+.... |...|..++.++..+...||
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444555444433332 33344444444444444444
No 228
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=22.01 E-value=2.5e+02 Score=21.93 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 014591 106 LAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDAN 149 (422)
Q Consensus 106 l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~ 149 (422)
|.++|.+|..+ +++|+++-..++ +|..-=.+|-++.
T Consensus 1 L~~~I~~QG~~-------VR~LKa~ka~k~-~i~~aV~~Ll~LK 36 (56)
T PF00458_consen 1 LEAQIAAQGDK-------VRKLKAEKADKE-EIDAAVAKLLELK 36 (56)
T ss_dssp HHHHHHHHHHH-------HHHHHHTT--HH-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHH-------HHHHHccCCcHH-HHHHHHHHHHHHH
Confidence 45677777777 788888754433 3443333333333
No 229
>PRK01156 chromosome segregation protein; Provisional
Probab=21.89 E-value=1.3e+03 Score=26.70 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 014591 32 PEALEALVSKIFSNISSLKSAYIELQAAHTPY 63 (422)
Q Consensus 32 ~~~~eali~~lFa~vSslK~AY~qLQ~Ah~Py 63 (422)
+.....++.++| .+..++.+|-++....--|
T Consensus 148 ~~~r~~~ld~~~-~~~~~~~~~~~~~~~~~~~ 178 (895)
T PRK01156 148 PAQRKKILDEIL-EINSLERNYDKLKDVIDML 178 (895)
T ss_pred HHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence 334445555665 4456666666655544333
No 230
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.38 E-value=1.6e+02 Score=25.78 Aligned_cols=33 Identities=9% Similarity=0.366 Sum_probs=21.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 124 VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 124 ~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
+..|+.++..--.+|..||..+.++...|..|.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777777777777666554
No 231
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.38 E-value=3.3e+02 Score=22.98 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014591 120 YEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 120 ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
.+..+++|+.++.....++..|+.+|.++
T Consensus 75 le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 75 IELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666554
No 232
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.36 E-value=3.6e+02 Score=25.48 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccchHHH-----HHHHHHHHHHHHHHhhhhhhhh
Q 014591 123 MVKKFQSEIQNKDSEIH-----QLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 123 ~~~kL~~e~~~kDsEi~-----~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
-+.+|+..+..++.+|. .-|.+++|+.....+||.++.+
T Consensus 100 ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 100 RLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35677777776666433 3356666666666666655544
No 233
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.26 E-value=3.1e+02 Score=26.28 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
.+..+..+..|+.....++..+..-...|..|+.+|.+...+...|--|.+.
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555556666666666666665555544444
No 234
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.12 E-value=3.1e+02 Score=27.95 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=17.0
Q ss_pred hccChHHHHHHHHHHHHHH-----------hhhHHHHHH
Q 014591 28 MNQNPEALEALVSKIFSNI-----------SSLKSAYIE 55 (422)
Q Consensus 28 ~~~~~~~~eali~~lFa~v-----------SslK~AY~q 55 (422)
.++=......++.++|+.= -.++++|++
T Consensus 91 gY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe 129 (269)
T PF05278_consen 91 GYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE 129 (269)
T ss_pred CEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence 3343445567788888631 247788875
No 235
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.11 E-value=3e+02 Score=26.59 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=14.9
Q ss_pred HHhhcCCCChhhHHHh-------HHHHHHHhhhhHH
Q 014591 56 LQAAHTPYDPDKIQAA-------DKLVISELKNLSE 84 (422)
Q Consensus 56 LQ~Ah~Pydpd~I~aA-------D~~vVseL~~ls~ 84 (422)
||.-.-||....+-++ -.+|+-=|..|++
T Consensus 16 ~~eqNrP~ssq~v~~~lq~e~lgktavqk~Ld~La~ 51 (201)
T KOG4603|consen 16 LQEQNRPYSSQDVFGNLQREHLGKTAVQKTLDQLAQ 51 (201)
T ss_pred HHHhcCCCchHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 3444567766544332 2345555665554
No 236
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=21.09 E-value=8.3e+02 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 135 DSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 135 DsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
..++..++.+|..+......++..+..
T Consensus 177 ~~~~~~~~~~l~~~~~~l~~a~~~l~~ 203 (331)
T PRK03598 177 PQDIAQAKASLAQAQAALAQAELNLQD 203 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677777777776666666666644
No 237
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=20.98 E-value=2e+02 Score=32.33 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Le 156 (422)
.+|.+.++-..+-.+.+.-+|++.|++++..|.++++.++....+|-
T Consensus 19 ~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~lt 65 (732)
T KOG0614|consen 19 ARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLT 65 (732)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444455555555666666666666666666666665555554444
No 238
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=20.94 E-value=1e+03 Score=25.23 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCChH
Q 014591 194 AAYKAIHDFSKPLINMMKAAGWDLD 218 (422)
Q Consensus 194 ~A~~si~~FaK~Li~~M~~agwdl~ 218 (422)
+|...+..+.+.+..+-+..||++.
T Consensus 125 Ea~~~a~~Ll~mY~~~a~~~g~~~~ 149 (360)
T TIGR00019 125 EAAIFAGDLFRMYSRYAESKGWKVE 149 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 4555566666677777777899765
No 239
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.92 E-value=5.7e+02 Score=23.51 Aligned_cols=55 Identities=22% Similarity=0.451 Sum_probs=32.8
Q ss_pred HHHHHH----HHHHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Q 014591 106 LAAEIQ----EQQSLLKTYEVM---VKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLK 160 (422)
Q Consensus 106 l~aei~----E~q~ll~~ye~~---~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~ 160 (422)
|.++++ ++..+...-|.. +..|+.++..-.++...|...|+.+.+.+..|.+-+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555543 233444444433 5667777777777777777777777766666655443
No 240
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.90 E-value=97 Score=24.68 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 014591 137 EIHQLQQHIEDANQKRVKLE 156 (422)
Q Consensus 137 Ei~~Lr~~L~e~~~~n~~Le 156 (422)
|++-||.++.+|..+|..||
T Consensus 15 EVevLK~~I~eL~~~n~~Le 34 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLE 34 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888887776
No 241
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=20.87 E-value=3.9e+02 Score=21.88 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 014591 106 LAAEIQEQQSL-LKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDA 148 (422)
Q Consensus 106 l~aei~E~q~l-l~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~ 148 (422)
+..+|++.+.. +++. ..++.|..+...=.-.|..-+++|+++
T Consensus 35 ~d~~le~l~~q~~k~~-~~~~~L~~~~~r~~l~vQlt~EkLdel 77 (80)
T PF11488_consen 35 KDKELEELYQQDCKTE-MEVKMLETQDPRDELNVQLTQEKLDEL 77 (80)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhchhhHHhHHHHHHhHHHH
Confidence 34455543332 2333 445555555433222344345555554
No 242
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.85 E-value=6.4e+02 Score=28.51 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHhh-hhHHHHHHHhhCCCCCCCCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---HHHHHHHHH
Q 014591 72 DKLVISELK-NLSELKHFYRENNPKPACISPQ--DSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDS---EIHQLQQHI 145 (422)
Q Consensus 72 D~~vVseL~-~ls~LK~~y~~~~~~~~~~~p~--~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDs---Ei~~Lr~~L 145 (422)
+.--|.||. .|++||.-.....+...+..|. -..|.++++. |-+..+.+..+|+++++.+.. -+.+...+|
T Consensus 48 ~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~---L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL 124 (617)
T PF15070_consen 48 DISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEH---LRKELESLEEQLQAQVENNEQLSRLNQEQEERL 124 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhh
Q 014591 146 EDANQKRVKLEKNL 159 (422)
Q Consensus 146 ~e~~~~n~~Lek~l 159 (422)
.+++.....++.+.
T Consensus 125 ~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 125 AELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHH
No 243
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=20.70 E-value=2.6e+02 Score=27.61 Aligned_cols=45 Identities=36% Similarity=0.567 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHHHHHHHHHHHHHHH
Q 014591 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEI----QNKDSEIHQLQQHIEDANQKR 152 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~----~~kDsEi~~Lr~~L~e~~~~n 152 (422)
.++++.|-+ -|+.|+...+.-..++ .+|+-||..+++ |+.+..++
T Consensus 89 ~RlE~KVv~---pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~-Leklr~k~ 137 (219)
T PF06730_consen 89 ERLEAKVVE---PLSQYGTICKHARDELKKFNKARNKEIKQLKQ-LEKLRQKN 137 (219)
T ss_pred HHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHccC
Confidence 345555544 5678887765544444 455556665543 44443333
No 244
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.59 E-value=4.3e+02 Score=32.18 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014591 109 EIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKLR 162 (422)
Q Consensus 109 ei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~~ 162 (422)
++.+.+.-+..++..+..|+++++....+|..++.+|.++......+.+.|+..
T Consensus 971 qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666777777777777777777777777776666666555544
No 245
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=20.45 E-value=1e+03 Score=27.74 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Q 014591 79 LKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 79 L~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~ 158 (422)
+...++||..+.+...-................+.+.-+...+...++|+.++..-+.++..++.+|.|.+....+|...
T Consensus 560 ~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e 639 (769)
T PF05911_consen 560 SSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE 639 (769)
T ss_pred HHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667666665321111111112222333333333334444456666666666667777777777777777777766
Q ss_pred hhh
Q 014591 159 LKL 161 (422)
Q Consensus 159 l~~ 161 (422)
|..
T Consensus 640 L~~ 642 (769)
T PF05911_consen 640 LES 642 (769)
T ss_pred HHH
Confidence 654
No 246
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=20.44 E-value=2.2e+02 Score=21.44 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 014591 105 RLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDAN 149 (422)
Q Consensus 105 ~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~ 149 (422)
.|..++.+.-++ +++|+..++..--|+..||.-+.++.
T Consensus 5 ~l~~ql~~l~~~-------l~elk~~l~~Q~kE~~~LRntI~eC~ 42 (45)
T PF11598_consen 5 QLIKQLSELNQM-------LQELKELLRQQIKETRFLRNTIMECQ 42 (45)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666665555 57777788877789999999887653
No 247
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=20.40 E-value=8.1e+02 Score=24.12 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=49.7
Q ss_pred hhhHHHhHHHHHHHhhhhHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 014591 65 PDKIQAADKLVISELKNLSELKHFYRENNPKPACISPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQH 144 (422)
Q Consensus 65 pd~I~aAD~~vVseL~~ls~LK~~y~~~~~~~~~~~p~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~ 144 (422)
++.|+.=|.+=+.-+..|..+...-+-... .........++++-..|+-|-.++-++++++..+..+.+.-...
T Consensus 95 ~e~~rE~~~~~~e~~e~l~km~EslRi~~~------~e~~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r 168 (225)
T KOG4848|consen 95 AEEIREFNNAKKEYKELLKKMRESLRILYT------KEPEKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVR 168 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 466788888877777777666554332211 01112335566677799999999999999988776665555444
Q ss_pred HHHHH
Q 014591 145 IEDAN 149 (422)
Q Consensus 145 L~e~~ 149 (422)
++.+.
T Consensus 169 ~erli 173 (225)
T KOG4848|consen 169 LERLI 173 (225)
T ss_pred HHHHH
Confidence 44333
No 248
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=20.39 E-value=7.1e+02 Score=23.27 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=42.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 102 QDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDS--------EIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 102 ~~~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDs--------Ei~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
....|-.++.+.+...+-...|+.+.+..+..-.+ +|..+...|..+......+|+.|..
T Consensus 103 ~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~ 170 (173)
T PF07445_consen 103 PIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEKIEEQIQR 170 (173)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666666666666666777666666543211 6889999999999999999998754
No 249
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=20.38 E-value=4.7e+02 Score=28.52 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Q 014591 116 LLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKN 158 (422)
Q Consensus 116 ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~ 158 (422)
+-++|..++++-+. +.+...|+++|.++.--.+.|+.|
T Consensus 265 ln~~Y~~~~~~~~~-----~~~~~~L~~~lq~A~wLiksL~qR 302 (444)
T COG1508 265 LNQEYAALVSRAEN-----DEDQDFLKEKLQEAKWLIKSLEQR 302 (444)
T ss_pred ecHHHHHHHhhccc-----chhHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888776444 667788888888888877777765
No 250
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=20.16 E-value=3.8e+02 Score=28.88 Aligned_cols=55 Identities=13% Similarity=0.270 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014591 104 SRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVKLEKNLKL 161 (422)
Q Consensus 104 ~~l~aei~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~Lek~l~~ 161 (422)
..+..|++|+..-..-.+.-.+.|+.+++. |+..+-+.|+|..=+..+||+.|+.
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~kr---dy~fi~etLQEERyR~erLEEqLNd 317 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKR---DYKFIAETLQEERYRYERLEEQLND 317 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345566666443333333334445544443 5677778888887788888888875
No 251
>PF13166 AAA_13: AAA domain
Probab=20.14 E-value=7.5e+02 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 014591 190 QAVEAAYKAIHDFSKPLINMM 210 (422)
Q Consensus 190 ~~~~~A~~si~~FaK~Li~~M 210 (422)
..|++-=+.+-.||=-|-...
T Consensus 499 ~~LSEGEk~~iAf~yFla~l~ 519 (712)
T PF13166_consen 499 KILSEGEKRAIAFAYFLAELK 519 (712)
T ss_pred CccCHHHHHHHHHHHHHHHHh
Confidence 566666677777776555555
No 252
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.02 E-value=2.1e+02 Score=32.06 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Q 014591 110 IQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLQQHIEDANQKRVK 154 (422)
Q Consensus 110 i~E~q~ll~~ye~~~~kL~~e~~~kDsEi~~Lr~~L~e~~~~n~~ 154 (422)
...+.+....|+-.+++|+.|+..|.+|+..|+.+-++|......
T Consensus 282 ~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 282 VSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!