Query 014593
Match_columns 422
No_of_seqs 139 out of 1582
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361 Chaperonin complex com 100.0 5.4E-92 1.2E-96 652.6 29.1 419 4-422 1-419 (543)
2 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2E-88 4.4E-93 699.3 47.3 411 11-421 4-414 (522)
3 TIGR02339 thermosome_arch ther 100.0 1.4E-87 3.1E-92 692.5 46.7 404 11-421 4-415 (519)
4 TIGR02345 chap_CCT_eta T-compl 100.0 1.3E-87 2.9E-92 692.2 46.3 413 7-421 2-415 (522)
5 cd03343 cpn60 cpn60 chaperonin 100.0 1.4E-86 3E-91 685.9 46.4 404 11-421 3-412 (517)
6 TIGR02347 chap_CCT_zeta T-comp 100.0 2.5E-86 5.4E-91 681.5 47.9 404 11-421 4-421 (531)
7 TIGR02344 chap_CCT_gamma T-com 100.0 1.2E-86 2.5E-91 686.7 44.9 404 11-421 4-416 (525)
8 PTZ00212 T-complex protein 1 s 100.0 6.7E-86 1.4E-90 680.5 48.4 413 4-421 3-421 (533)
9 TIGR02343 chap_CCT_epsi T-comp 100.0 4.1E-86 8.8E-91 681.4 46.4 409 8-421 10-426 (532)
10 cd03339 TCP1_epsilon TCP-1 (CT 100.0 5.7E-86 1.2E-90 681.2 46.0 406 11-421 9-422 (526)
11 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.1E-85 4.5E-90 675.1 49.0 405 12-421 2-409 (517)
12 cd03335 TCP1_alpha TCP-1 (CTT 100.0 3.6E-85 7.9E-90 675.3 46.6 397 18-421 3-413 (527)
13 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.7E-84 5.8E-89 668.1 46.6 399 17-421 2-411 (515)
14 TIGR02342 chap_CCT_delta T-com 100.0 4.9E-84 1.1E-88 665.0 46.9 398 18-421 4-412 (517)
15 TIGR02340 chap_CCT_alpha T-com 100.0 8.3E-84 1.8E-88 666.0 47.6 398 17-421 6-417 (536)
16 TIGR02341 chap_CCT_beta T-comp 100.0 1.1E-83 2.3E-88 661.6 47.9 406 11-421 2-410 (519)
17 TIGR02346 chap_CCT_theta T-com 100.0 1.5E-82 3.3E-87 654.7 47.6 402 11-421 5-413 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.2E-81 2.5E-86 642.0 43.2 373 13-421 2-378 (484)
19 KOG0363 Chaperonin complex com 100.0 3.1E-81 6.6E-86 577.4 29.5 410 7-421 2-414 (527)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3.6E-80 7.9E-85 630.9 39.7 363 11-421 4-375 (480)
21 KOG0358 Chaperonin complex com 100.0 7.4E-81 1.6E-85 577.4 27.1 398 17-421 20-429 (534)
22 COG0459 GroL Chaperonin GroEL 100.0 1.7E-78 3.7E-83 615.1 38.5 398 15-421 3-409 (524)
23 cd00309 chaperonin_type_I_II c 100.0 1.5E-77 3.3E-82 611.6 41.5 356 18-421 3-361 (464)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.1E-76 4.5E-81 602.1 41.5 356 19-421 4-365 (472)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 7.4E-75 1.6E-79 597.0 41.2 379 35-422 1-381 (485)
26 KOG0364 Chaperonin complex com 100.0 6.9E-77 1.5E-81 559.9 21.2 410 5-421 1-416 (527)
27 KOG0360 Chaperonin complex com 100.0 7.8E-74 1.7E-78 544.1 25.6 400 15-422 11-424 (545)
28 PRK00013 groEL chaperonin GroE 100.0 5.4E-71 1.2E-75 567.3 40.4 361 17-421 4-423 (542)
29 PRK12849 groEL chaperonin GroE 100.0 8.6E-71 1.9E-75 565.9 41.7 360 17-421 4-423 (542)
30 PTZ00114 Heat shock protein 60 100.0 1.2E-70 2.7E-75 567.4 40.9 360 17-421 16-436 (555)
31 cd03344 GroEL GroEL_like type 100.0 2.2E-70 4.7E-75 561.5 41.1 359 18-421 3-421 (520)
32 KOG0359 Chaperonin complex com 100.0 2E-73 4.4E-78 535.8 16.5 402 10-421 4-412 (520)
33 KOG0362 Chaperonin complex com 100.0 1.5E-70 3.3E-75 525.0 36.2 410 1-421 1-416 (537)
34 TIGR02348 GroEL chaperonin Gro 100.0 5.3E-70 1.2E-74 559.7 39.9 360 17-421 3-422 (524)
35 PRK12851 groEL chaperonin GroE 100.0 7.8E-70 1.7E-74 559.3 39.7 361 17-421 5-424 (541)
36 PRK12850 groEL chaperonin GroE 100.0 3.1E-69 6.7E-74 555.2 41.7 361 17-421 5-424 (544)
37 PRK12852 groEL chaperonin GroE 100.0 3.3E-68 7.2E-73 548.8 39.9 360 17-421 5-424 (545)
38 CHL00093 groEL chaperonin GroE 100.0 2.1E-68 4.6E-73 548.4 37.2 360 17-421 4-423 (529)
39 PRK14104 chaperonin GroEL; Pro 100.0 7.3E-68 1.6E-72 544.6 38.6 360 17-421 5-424 (546)
40 PLN03167 Chaperonin-60 beta su 100.0 1E-67 2.2E-72 546.5 33.8 362 17-421 58-478 (600)
41 KOG0357 Chaperonin complex com 100.0 9.4E-52 2E-56 378.6 14.8 279 5-421 9-290 (400)
42 KOG0356 Mitochondrial chaperon 100.0 9.8E-45 2.1E-49 352.9 21.0 359 16-421 17-438 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 1.2E-42 2.6E-47 326.8 25.8 228 172-409 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 4.1E-39 8.9E-44 295.0 23.5 205 156-405 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 6.5E-26 1.4E-30 241.7 15.9 232 172-413 331-574 (1598)
46 COG1433 Uncharacterized conser 64.9 23 0.0005 29.2 6.1 50 279-329 56-105 (121)
47 cd00851 MTH1175 This uncharact 57.2 22 0.00047 27.8 4.7 39 279-318 54-92 (103)
48 PF02579 Nitro_FeMo-Co: Dinitr 56.8 35 0.00075 26.0 5.7 37 280-317 45-81 (94)
49 cd00562 NifX_NifB This CD repr 50.2 45 0.00098 25.8 5.5 38 280-318 53-90 (102)
50 PRK13600 putative ribosomal pr 50.2 72 0.0016 24.5 6.2 50 277-326 18-71 (84)
51 PRK13601 putative L7Ae-like ri 42.4 1.1E+02 0.0023 23.3 6.1 51 279-332 15-69 (82)
52 PRK13602 putative ribosomal pr 42.1 1E+02 0.0023 23.3 6.1 53 278-333 17-73 (82)
53 cd01143 YvrC Periplasmic bindi 40.7 76 0.0017 27.7 6.0 52 281-332 53-111 (195)
54 PRK06683 hypothetical protein; 40.0 1.1E+02 0.0025 23.1 5.9 52 279-333 18-73 (82)
55 PRK07283 hypothetical protein; 39.5 1.1E+02 0.0024 24.0 6.0 50 279-331 25-78 (98)
56 PRK07714 hypothetical protein; 37.9 1.3E+02 0.0029 23.6 6.3 51 279-332 25-79 (100)
57 cd01144 BtuF Cobalamin binding 35.5 98 0.0021 28.2 6.1 53 280-332 49-108 (245)
58 PRK09534 btuF corrinoid ABC tr 35.0 84 0.0018 31.0 5.8 53 280-332 111-170 (359)
59 PRK01018 50S ribosomal protein 34.8 1.5E+02 0.0034 23.2 6.2 51 279-332 23-78 (99)
60 cd00852 NifB NifB belongs to a 33.4 1.2E+02 0.0027 23.8 5.6 39 277-318 56-94 (106)
61 TIGR03677 rpl7ae 50S ribosomal 32.4 1.5E+02 0.0033 24.1 6.0 46 279-324 33-83 (117)
62 TIGR00129 fdhD_narQ formate de 31.7 52 0.0011 30.6 3.5 44 278-321 182-225 (237)
63 PF12846 AAA_10: AAA-like doma 31.6 1.4E+02 0.0031 27.8 6.7 57 276-332 241-302 (304)
64 cd04743 NPD_PKS 2-Nitropropane 31.1 1.4E+02 0.003 29.1 6.4 56 278-334 72-127 (320)
65 TIGR03659 IsdE heme ABC transp 30.5 95 0.0021 29.4 5.2 52 281-332 84-141 (289)
66 PRK04175 rpl7ae 50S ribosomal 30.2 1.8E+02 0.0038 23.9 6.0 47 278-324 36-87 (122)
67 TIGR03151 enACPred_II putative 29.9 1.7E+02 0.0037 28.3 6.8 56 279-334 78-133 (307)
68 PRK00724 formate dehydrogenase 29.6 80 0.0017 29.8 4.4 43 278-320 211-253 (263)
69 PTZ00106 60S ribosomal protein 29.6 1.9E+02 0.0041 23.2 6.0 51 279-332 32-87 (108)
70 COG4359 Uncharacterized conser 28.9 1.3E+02 0.0029 26.8 5.2 44 275-318 76-123 (220)
71 COG1358 RPL8A Ribosomal protei 28.3 2.1E+02 0.0045 23.4 6.0 49 277-325 32-85 (116)
72 cd00853 NifX NifX belongs to a 28.3 1.4E+02 0.0031 23.3 5.1 31 287-318 60-90 (102)
73 TIGR02663 nifX nitrogen fixati 27.8 2E+02 0.0044 23.3 6.0 50 277-329 54-107 (119)
74 COG1526 FdhD Uncharacterized p 26.7 1E+02 0.0022 29.2 4.4 44 279-322 212-255 (266)
75 PF01248 Ribosomal_L7Ae: Ribos 26.4 1.2E+02 0.0026 23.3 4.2 52 278-332 21-77 (95)
76 PRK05583 ribosomal protein L7A 26.1 2.5E+02 0.0054 22.4 6.0 51 279-332 24-78 (104)
77 cd01138 FeuA Periplasmic bindi 25.4 1.5E+02 0.0033 27.0 5.5 51 281-332 59-113 (248)
78 KOG2663 Acetolactate synthase, 24.1 85 0.0019 29.2 3.3 28 373-401 121-148 (309)
79 cd01141 TroA_d Periplasmic bin 24.0 96 0.0021 27.0 3.7 51 280-330 61-119 (186)
80 KOG1481 Cysteine synthase [Ami 23.8 28 0.00061 33.0 0.2 58 357-416 48-105 (391)
81 TIGR03859 PQQ_PqqD coenzyme PQ 22.6 2.7E+02 0.0058 20.9 5.4 47 45-91 13-59 (81)
82 PRK06552 keto-hydroxyglutarate 21.9 5.9E+02 0.013 23.1 8.5 56 279-336 79-135 (213)
83 PF13380 CoA_binding_2: CoA bi 21.6 2.2E+02 0.0049 22.9 5.2 40 277-316 68-108 (116)
84 PF03060 NMO: Nitronate monoox 20.8 2.3E+02 0.005 27.6 5.9 58 277-334 102-160 (330)
85 PF02796 HTH_7: Helix-turn-hel 20.4 1.2E+02 0.0025 19.9 2.6 32 108-139 11-42 (45)
86 PF02634 FdhD-NarQ: FdhD/NarQ 20.4 94 0.002 28.7 3.0 41 279-319 183-223 (236)
No 1
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-92 Score=652.63 Aligned_cols=419 Identities=75% Similarity=1.121 Sum_probs=409.6
Q ss_pred CCchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHH
Q 014593 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (422)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~ 83 (422)
||+||+..++++++.++|.-.+.+|+.||.++++.++|||||+||||+|++..|+++|||||+|||+-|++.||+++.++
T Consensus 1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV 80 (543)
T KOG0361|consen 1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV 80 (543)
T ss_pred CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHh
Q 014593 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (422)
Q Consensus 84 ~~~~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~ 163 (422)
+.+++||.++||||||+|+|++++|+++-.+++.|+||..|+++|++|...|++.++++++.++..+..+.++.|.+.|.
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~ 160 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA 160 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987777777999999999
Q ss_pred HhhccccccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEE
Q 014593 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (422)
Q Consensus 164 tsl~sk~~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~ 243 (422)
|+++||++++..++|+++++||+..+..+.+.+.|.|++++||+++||.+++|+.|.+.|++.+|+++|+++.||||+++
T Consensus 161 T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~L 240 (543)
T KOG0361|consen 161 TALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 240 (543)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEE
Confidence 99999999999999999999999998744478999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHH
Q 014593 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (422)
Q Consensus 244 ~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~ 323 (422)
|-.||.+.++.|+++.+.++++++.+++.||+.+.+.+++|...|++||++.-.|.|.+.+||++++|+|.+||+.+||.
T Consensus 241 nvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~ 320 (543)
T KOG0361|consen 241 NVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN 320 (543)
T ss_pred eeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Q 014593 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (422)
Q Consensus 324 ~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~ 403 (422)
|+..++|++|.++.+++.+..||+|..|+++++|++||-+|+||+..+.||++|||+-++.++|.+|++|||++++|.++
T Consensus 321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrral 400 (543)
T KOG0361|consen 321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRAL 400 (543)
T ss_pred HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEecCCHHHHhhhcC
Q 014593 404 KNSTVVAGGGAIDVRFYHI 422 (422)
Q Consensus 404 ~~~~vv~GGG~~E~~ls~~ 422 (422)
++..+|+|||++||++|+|
T Consensus 401 kn~~vVaGGGaiEMElSk~ 419 (543)
T KOG0361|consen 401 KNDSVVAGGGAIEMELSKY 419 (543)
T ss_pred ccCcEeeCCceeeehHHHH
Confidence 9999999999999999975
No 2
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-88 Score=699.32 Aligned_cols=411 Identities=75% Similarity=1.137 Sum_probs=394.8
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcc
Q 014593 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (422)
+++++.++..|.+++.+|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~ 83 (522)
T cd03340 4 LLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQD 83 (522)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhH
Confidence 45777788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccc
Q 014593 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (422)
Q Consensus 91 ~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~ 170 (422)
+++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++..+++.+++.|.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~ 163 (522)
T cd03340 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKL 163 (522)
T ss_pred hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999998764322346789999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeecccc
Q 014593 171 IGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELK 250 (422)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~ 250 (422)
.+++.+.|++++++|+..++++.|.++|++++++|++++||++++|++|+++|.+|+|.+||+.++||+|++++++||+.
T Consensus 164 ~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 243 (522)
T cd03340 164 IASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELK 243 (522)
T ss_pred chhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCC
Confidence 99999999999999999997644788999999999999999999999999999999988899999999999999999999
Q ss_pred ccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHhC
Q 014593 251 SEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATG 330 (422)
Q Consensus 251 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tG 330 (422)
+++.+..+.++++++++++.+.|+++++++++++++.|++||+++++|+|.+++||.++||+++++++.++|+|||++||
T Consensus 244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tG 323 (522)
T cd03340 244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATG 323 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Q 014593 331 GTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVA 410 (422)
Q Consensus 331 a~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~ 410 (422)
|++++++++++++.+|+|+.|++.++|+++|++|+||++++.+||+|||+++..++|.+|+++||++++++++++|++||
T Consensus 324 a~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvp 403 (522)
T cd03340 324 GSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVA 403 (522)
T ss_pred CEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHhhhc
Q 014593 411 GGGAIDVRFYH 421 (422)
Q Consensus 411 GGG~~E~~ls~ 421 (422)
|||++|+++|+
T Consensus 404 GGG~~E~~ls~ 414 (522)
T cd03340 404 GGGAIEMELSK 414 (522)
T ss_pred CcCHHHHHHHH
Confidence 99999999985
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.4e-87 Score=692.53 Aligned_cols=404 Identities=41% Similarity=0.684 Sum_probs=388.7
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcc
Q 014593 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (422)
+++++.+..+|.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd 83 (519)
T TIGR02339 4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 83 (519)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccc
Q 014593 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (422)
Q Consensus 91 ~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~ 170 (422)
+++||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++++|++..+ ++.|.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~----~~~L~~ia~tsl~sk~ 159 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPED----RDLLKKVAETSLTGKA 159 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCccc----HHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987654 5789999999999999
Q ss_pred c-cchhHHHHHHHHHHHHhcCC---C---C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEE
Q 014593 171 I-GGEKEFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (422)
Q Consensus 171 ~-~~~~~~l~~lv~~ai~~v~~---~---~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll 242 (422)
. +.+.+.|++++++|+..+++ + . |.++|+|++++|++++||++++|++|++++.+|+ ||+.++||||++
T Consensus 160 ~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~---m~~~i~n~kIll 236 (519)
T TIGR02339 160 SAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPG---MPKRVKNAKIAL 236 (519)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCC---CccccCCCcEEE
Confidence 9 78999999999999999974 1 1 6788999999999999999999999999999875 689999999999
Q ss_pred EeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHH
Q 014593 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (422)
Q Consensus 243 ~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l 322 (422)
++++||+++++.++++.+++++++.+++++|++++++++++|++.|++||+++++|++.++++|.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L 316 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDI 316 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 014593 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (422)
Q Consensus 323 ~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~ 402 (422)
+|||++|||++++++++++++.+|+|++|+++++|+++|++|+||.++..|||+||||++.+++|.+|+++||+++++++
T Consensus 317 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 317 EKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred HHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred hcCCcEEecCCHHHHhhhc
Q 014593 403 TKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~ 421 (422)
+++|++|||||++||++|+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~ 415 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELAL 415 (519)
T ss_pred hcCCCEeeCCCHHHHHHHH
Confidence 9999999999999999985
No 4
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-87 Score=692.17 Aligned_cols=413 Identities=68% Similarity=1.069 Sum_probs=394.9
Q ss_pred hhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHH
Q 014593 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIA 86 (422)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~ 86 (422)
||..+++++.++..|.+++..|+.||.+++++++|||||+||+|||++..| ++|||||+|||++|+++||+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a 80 (522)
T TIGR02345 2 PTIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIA 80 (522)
T ss_pred CccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHH
Confidence 444567788889999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhh
Q 014593 87 KSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTL 166 (422)
Q Consensus 87 ~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl 166 (422)
++|++++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++..+ ..+++.|.++|+|++
T Consensus 81 ~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l~~va~tsl 159 (522)
T TIGR02345 81 KSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVK-GEQREVLEKCAATAL 159 (522)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcc-cccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999987421 112578999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhcCCCC-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEee
Q 014593 167 SSKLIGGEKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (422)
Q Consensus 167 ~sk~~~~~~~~l~~lv~~ai~~v~~~~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~ 245 (422)
+||+.+.+++.|++++++|+..+++++ |.++|++++++|++++||++++|++|+++|.+|+|.+||+.++||+|+++++
T Consensus 160 ~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 160 NSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 239 (522)
T ss_pred ccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec
Confidence 999999999999999999999998644 7889999999999999999999999999999999988999999999999999
Q ss_pred eccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHH
Q 014593 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (422)
Q Consensus 246 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~i 325 (422)
+|++.+++.+..+.++++++++++.+.|+++++++++++++.|++||+++++|++.+++||.++||+++++++.++++++
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 014593 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (422)
Q Consensus 326 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~ 405 (422)
+++|||++++++++++++.+|+|+.|+++++++++|++|+||+++++|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 320 a~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~ 399 (522)
T TIGR02345 320 VKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKA 399 (522)
T ss_pred HHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCHHHHhhhc
Q 014593 406 STVVAGGGAIDVRFYH 421 (422)
Q Consensus 406 ~~vv~GGG~~E~~ls~ 421 (422)
+++|||||++|+++|+
T Consensus 400 ~~vvpGGG~~e~~ls~ 415 (522)
T TIGR02345 400 RKIVAGGGAIEMELSK 415 (522)
T ss_pred CCEEeCCCHHHHHHHH
Confidence 9999999999999985
No 5
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.4e-86 Score=685.95 Aligned_cols=404 Identities=41% Similarity=0.668 Sum_probs=388.9
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcc
Q 014593 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (422)
+++++.+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 35677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccc
Q 014593 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (422)
Q Consensus 91 ~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~ 170 (422)
+++||||||+++|+++|++++.+++++|+||..|++||++|++.+++.|++++++++..+ ++.+.++|++|++||+
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~----~~~l~~va~ts~~sk~ 158 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDD----KDTLRKIAKTSLTGKG 158 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987544 5789999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCC-----C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEe
Q 014593 171 IGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (422)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~v~~~-----~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (422)
.+.+.+.|++++++|+..++++ . |.++|+|++++|++++||++++|++|+++|.+|+ ||+.++||||++++
T Consensus 159 ~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~---m~~~~~n~~Illl~ 235 (517)
T cd03343 159 AEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPG---MPKRVENAKIALLD 235 (517)
T ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCC---CccccCCCcEEEEe
Confidence 9999999999999999998653 2 6678999999999999999999999999999987 48999999999999
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHH
Q 014593 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (422)
Q Consensus 245 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ 324 (422)
++||+++++.++++.+++.++++++.+.|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~ 315 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEK 315 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhc
Q 014593 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (422)
Q Consensus 325 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~ 404 (422)
||++|||++++++++++++.+|+|+.|++.++|+++|++|+||++++.|||+||||++.+++|.+|+++||+++++++++
T Consensus 316 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 316 LARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred HHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCHHHHhhhc
Q 014593 405 NSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 405 ~~~vv~GGG~~E~~ls~ 421 (422)
+|++|||||++|+++|+
T Consensus 396 ~~~vvpGGG~~e~~ls~ 412 (517)
T cd03343 396 DGKVVAGGGAVEIELAK 412 (517)
T ss_pred CCCeeeCCCHHHHHHHH
Confidence 99999999999999985
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-86 Score=681.55 Aligned_cols=404 Identities=27% Similarity=0.461 Sum_probs=385.6
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcc
Q 014593 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (422)
+++++.++..|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd 83 (531)
T TIGR02347 4 LLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQD 83 (531)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhh
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhccccc-CCChHHHHHHHHHHHhHhhccc
Q 014593 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE-GQSLEEKKRLLSKCAATTLSSK 169 (422)
Q Consensus 91 ~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~-~~~~~~~~~~l~~va~tsl~sk 169 (422)
+++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|+++++++. ..+ ++.|.++|+|+++||
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK 159 (531)
T TIGR02347 84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVD----RELLLNVARTSLRTK 159 (531)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999997763 333 578999999999999
Q ss_pred cccchhHHHHHHHHHHHHhcCCCC---CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeee
Q 014593 170 LIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (422)
Q Consensus 170 ~~~~~~~~l~~lv~~ai~~v~~~~---~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~ 246 (422)
+.+++++.|++++++|+..+++++ |.++|++++++|++.+||++++|++|++++.+|+ ||++++||+|++++++
T Consensus 160 ~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~---~~~~~~n~~Ill~~~~ 236 (531)
T TIGR02347 160 LPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPD---MPRRVKNAYILTCNVS 236 (531)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCC---CceeccCceEEEEeCC
Confidence 999999999999999999997642 5677999999999999999999999999999987 4899999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Ce---EEEecCCccHHHHHHHHhCCceeecC
Q 014593 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSG-------AK---VVLSRLAIGDLATQYFADRDIFCAGR 316 (422)
Q Consensus 247 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~-------~~---lvi~~~~i~~~~~~~l~~~~I~~v~~ 316 (422)
|++.+++.+..+.+++++++..+++.|++++++++++|++.+ ++ ||+|+++|+|.+++||.++||+++++
T Consensus 237 le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~r 316 (531)
T TIGR02347 237 LEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRR 316 (531)
T ss_pred CCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEcc
Confidence 999999999999999999999999999999999999999866 25 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHH
Q 014593 317 VAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAI 396 (422)
Q Consensus 317 v~~~~l~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal 396 (422)
+++++|+|||++|||++++++++++++++|+|+.|+++.+++++|++|++|++++.|||+|||+|+.+++|.+|+++||+
T Consensus 317 v~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 317 AKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred CCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 397 MIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 397 ~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
+++++++++|++|||||++|++||.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~ 421 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYC 421 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHH
Confidence 9999999999999999999999985
No 7
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-86 Score=686.68 Aligned_cols=404 Identities=30% Similarity=0.568 Sum_probs=386.6
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcc
Q 014593 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (422)
+++++.++.+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~ 83 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccc
Q 014593 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (422)
Q Consensus 91 ~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~ 170 (422)
+++||||||+|+|+++||++|.+|+++|+||..|++||+.|++.++++|++++++++..+ .+.|.++++|+++||.
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sk~ 159 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND----DAAMLKLIQSCIGTKF 159 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987655 5779999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCCC-------Ccc-ceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEE
Q 014593 171 IGGEKEFFASMVVDAVGAIGDGD-------RLN-MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (422)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~v~~~~-------~~~-~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll 242 (422)
.++|.+.|++++++|+..+++++ |.+ +|+|++++||+++||++++|++|++++.++ +||++++||||++
T Consensus 160 ~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~---~m~~~~~n~kIll 236 (525)
T TIGR02344 160 VSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP---KMRRYIENPRIVL 236 (525)
T ss_pred chhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC---CCccccCCCCEEE
Confidence 99999999999999999997531 222 489999999999999999999999998876 4799999999999
Q ss_pred EeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHH
Q 014593 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (422)
Q Consensus 243 ~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l 322 (422)
++++|++.+++.++++.++++++++++++.|++++++++++|.+.|++||++++++++.++++|.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~L 316 (525)
T TIGR02344 237 LDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDN 316 (525)
T ss_pred EecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEceeccCCCCCCccc-cceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 014593 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (422)
Q Consensus 323 ~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~ 401 (422)
+|||++|||++++++++++++.+|+ |+.|+++++|+++|++|+||+++++|||+|||+++.+++|.+|+++||++++++
T Consensus 317 erIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 317 NRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred HHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEecCCHHHHhhhc
Q 014593 402 ATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 402 ~~~~~~vv~GGG~~E~~ls~ 421 (422)
++++|++|||||++|++||+
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~ 416 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSV 416 (525)
T ss_pred HHhCCCcccCCCHHHHHHHH
Confidence 99999999999999999985
No 8
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.7e-86 Score=680.55 Aligned_cols=413 Identities=38% Similarity=0.593 Sum_probs=391.2
Q ss_pred CCchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCC-----CCCeEEeccHHHHHhhccccCch
Q 014593 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD-----KGTVTISNDGATIMKLLDIVHPA 78 (422)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~-----~g~~~iTndg~tIl~~l~~~hP~ 78 (422)
|.+.|..+++++.++.+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ 82 (533)
T PTZ00212 3 MANVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA 82 (533)
T ss_pred ccccchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH
Confidence 3445666788888899999999999999999999999999999999999998 59999999999999999999999
Q ss_pred hHHHHHHHHhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHH
Q 014593 79 AKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLL 158 (422)
Q Consensus 79 ~~ll~~~~~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l 158 (422)
++|+++++++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++..+ ..+++.|
T Consensus 83 akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l 161 (533)
T PTZ00212 83 AKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDE-EKFKEDL 161 (533)
T ss_pred HHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccc-hhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886532 1235789
Q ss_pred HHHHhHhhccccccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCc
Q 014593 159 SKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNP 238 (422)
Q Consensus 159 ~~va~tsl~sk~~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~ 238 (422)
.++|+|+++||+.+.+.+.|++++++|+..+....+.+.|++++++|++++||++++|+++++++.+ .||++++||
T Consensus 162 ~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~----~~~~~i~n~ 237 (533)
T PTZ00212 162 LNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV----GQPKRLENC 237 (533)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCC----CCCccccCC
Confidence 9999999999999999999999999999998654478899999999999999999999999999765 268999999
Q ss_pred eEEEEeeecccccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCC
Q 014593 239 KILLLNIELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317 (422)
Q Consensus 239 kIll~~~~L~~~~~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v 317 (422)
||++++++||+++++. ++++.+++++++..+.+.|++++++.+++|++.|+++++++++|++.++++|.++||++++++
T Consensus 238 kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v 317 (533)
T PTZ00212 238 KILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHA 317 (533)
T ss_pred cEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecC
Confidence 9999999999999987 888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Q 014593 318 AEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIM 397 (422)
Q Consensus 318 ~~~~l~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~ 397 (422)
+.++++|||++|||+++++++++++..||+|+.|++..+|+++|++|+||+.+++|||+|||+|+.+++|.+|+++||++
T Consensus 318 ~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~ 397 (533)
T PTZ00212 318 DFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALC 397 (533)
T ss_pred CHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEecCCHHHHhhhc
Q 014593 398 IVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 398 ~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
++++++++|++|||||++|+++|+
T Consensus 398 vv~~~i~~~~vVpGGGa~e~~ls~ 421 (533)
T PTZ00212 398 VLSQTVKDTRVVLGGGCSEMLMAN 421 (533)
T ss_pred HHHHHhhCCCEeeCCCHHHHHHHH
Confidence 999999999999999999999985
No 9
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.1e-86 Score=681.39 Aligned_cols=409 Identities=33% Similarity=0.572 Sum_probs=387.8
Q ss_pred hhhhccc--cccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHH
Q 014593 8 QIILLKE--GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (422)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~ 85 (422)
|..++++ +.++..|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~ 89 (532)
T TIGR02343 10 PFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVEL 89 (532)
T ss_pred CchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHH
Confidence 4445566 46788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHh
Q 014593 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (422)
Q Consensus 86 ~~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~ts 165 (422)
+++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++.+. .+++.|.++|+|+
T Consensus 90 a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~t~ 167 (532)
T TIGR02343 90 SKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDN--NNKEPLIQAAKTS 167 (532)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCC--CCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999875321 1257899999999
Q ss_pred hccccccchhHHHHHHHHHHHHhcCCC---C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEE
Q 014593 166 LSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (422)
Q Consensus 166 l~sk~~~~~~~~l~~lv~~ai~~v~~~---~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIl 241 (422)
+++|+.+.+.+.|++++++|+..+... + |.++|++++++|++++||++++|++|++++.+++ ||+.++||||+
T Consensus 168 l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~---m~~~~~n~kI~ 244 (532)
T TIGR02343 168 LGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQ---MPKEVKDAKIA 244 (532)
T ss_pred hccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCC---CCeeecCCcEE
Confidence 999998888999999999999988542 2 7899999999999999999999999999999987 58999999999
Q ss_pred EEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHH
Q 014593 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (422)
Q Consensus 242 l~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~ 321 (422)
+++++||+++++.+..+.++++++++.+.+.|++++++++++|++.|++||+++++|+|.+++||.++||+++++++.++
T Consensus 245 l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~ 324 (532)
T TIGR02343 245 ILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHE 324 (532)
T ss_pred EEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEceeccCCCCCCccccceEEEEEECC--EEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 014593 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (422)
Q Consensus 322 l~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~ 399 (422)
|+|||++|||++++++++++++.||+|+.|+++++|+ ++|++|++|++++.+||+|||+|+.+++|.+|+++||++++
T Consensus 325 l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v 404 (532)
T TIGR02343 325 LELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVV 404 (532)
T ss_pred HHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 48999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEecCCHHHHhhhc
Q 014593 400 RRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 400 ~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
++++++|++|||||++|+++|+
T Consensus 405 ~~~i~~~~vvpGGGa~e~~ls~ 426 (532)
T TIGR02343 405 RNLIKNSRIVYGGGAAEISCSL 426 (532)
T ss_pred HHHHhCCCEEeCcCHHHHHHHH
Confidence 9999999999999999999985
No 10
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.7e-86 Score=681.18 Aligned_cols=406 Identities=32% Similarity=0.560 Sum_probs=386.0
Q ss_pred hcccc--ccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHh
Q 014593 11 LLKEG--TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (422)
Q Consensus 11 ~~~~~--~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~ 88 (422)
+++++ .+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 88 (526)
T cd03339 9 IVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKS 88 (526)
T ss_pred EecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHh
Confidence 45665 4688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcc
Q 014593 89 QDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSS 168 (422)
Q Consensus 89 ~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~s 168 (422)
|++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|+++++|++.+. .+.+.|.++|+|+++|
T Consensus 89 q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~tsl~s 166 (526)
T cd03339 89 QDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP--DNKEPLIQTAMTSLGS 166 (526)
T ss_pred hhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCc--ccHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999886421 1267899999999999
Q ss_pred ccccchhHHHHHHHHHHHHhcCCC---C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEe
Q 014593 169 KLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (422)
Q Consensus 169 k~~~~~~~~l~~lv~~ai~~v~~~---~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (422)
|+.+.+.+.|++++++|+..+... + |.+.|+|++++||+++||++++|++|++++.+++ ||+.++||||++++
T Consensus 167 k~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~---m~~~~~n~kI~ll~ 243 (526)
T cd03339 167 KIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQ---MPKEVKDAKIAILT 243 (526)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCC---CCceecCCCEEEEE
Confidence 998889999999999999988542 2 6789999999999999999999999999999987 58999999999999
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHH
Q 014593 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (422)
Q Consensus 245 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ 324 (422)
++||+++++.+.++.++++++++++.+.|+++++++++++++.|++||+++++|++.+++||.++||+++++++.++|+|
T Consensus 244 ~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~Ler 323 (526)
T cd03339 244 CPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIEL 323 (526)
T ss_pred ecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEceeccCCCCCCccccceEEEEEECC--EEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 014593 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (422)
Q Consensus 325 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~--~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~ 402 (422)
||++|||++++++++++++.+|+|+.|+++.+|. ++|++|+||++++.+||+|||+|+.+++|.+|+++||+++++++
T Consensus 324 Ia~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 324 IAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred HHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 68999999999999999999999999999999999999999999
Q ss_pred hcCCcEEecCCHHHHhhhc
Q 014593 403 TKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~ 421 (422)
+++|++|||||++|+++|+
T Consensus 404 ~~~~~vvpGGGa~e~~ls~ 422 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSL 422 (526)
T ss_pred hhCCCEEeCCCHHHHHHHH
Confidence 9999999999999999985
No 11
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-85 Score=675.15 Aligned_cols=405 Identities=37% Similarity=0.591 Sum_probs=384.3
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCC--CCCeEEeccHHHHHhhccccCchhHHHHHHHHhc
Q 014593 12 LKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~--~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~ 89 (422)
++++.++..|.++++.|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 35566788999999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccc
Q 014593 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (422)
Q Consensus 90 ~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk 169 (422)
++++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++..+ .++++.|.++|+|+++||
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~l~~ia~t~lssk 160 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDE-EAFREDLLNIARTTLSSK 160 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccccc-chhHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999885321 123678999999999999
Q ss_pred cccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeeccc
Q 014593 170 LIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (422)
Q Consensus 170 ~~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~ 249 (422)
+.+++++.|++++++|+..++...+.++|++++++|++++||++++|+++++++.++ ||+.++||||++++++|++
T Consensus 161 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~----~~~~~~n~kIli~~~~le~ 236 (517)
T cd03336 161 ILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN----QPKRIENAKILIANTPMDT 236 (517)
T ss_pred ccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCC----CCCeeccccEEEEecCCCc
Confidence 999999999999999999996533778999999999999999999999999987642 5899999999999999999
Q ss_pred ccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHH
Q 014593 250 KSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (422)
Q Consensus 250 ~~~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~ 328 (422)
++++. ++++.+++++++..+.+.|++++++++++|++.|+++++++++|++.+++||.++||++++++++++|+|||++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~ 316 (517)
T cd03336 237 DKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALV 316 (517)
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99987 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Q 014593 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (422)
Q Consensus 329 tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~v 408 (422)
|||++++++++++++.+|+|+.|++..+|+++|++|++|++++.|||+|||+|+.+++|.+|+++||++++++++++|++
T Consensus 317 tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~v 396 (517)
T cd03336 317 TGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRV 396 (517)
T ss_pred hCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHhhhc
Q 014593 409 VAGGGAIDVRFYH 421 (422)
Q Consensus 409 v~GGG~~E~~ls~ 421 (422)
|||||++|++||+
T Consensus 397 vpGGGa~e~~ls~ 409 (517)
T cd03336 397 VLGGGCSEMLMAK 409 (517)
T ss_pred EeCCCHHHHHHHH
Confidence 9999999999985
No 12
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-85 Score=675.34 Aligned_cols=397 Identities=39% Similarity=0.650 Sum_probs=378.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccCCCh
Q 014593 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (422)
Q Consensus 18 ~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 97 (422)
+.+|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhh-hcccccCCChHHHHHHHHHHHhHhhccccccchhH
Q 014593 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (422)
Q Consensus 98 tt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~-~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (422)
||+++|+++||+++.+++++|+||+.|++||+.|++.++++|++ +++|++..+ ++.|.++|+|+++||+.+.+.+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLG----KESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccC----HHHHHHHHHHHhcccccchhHH
Confidence 99999999999999999999999999999999999999999996 899987544 5789999999999999988889
Q ss_pred HHHHHHHHHHHhcCC--C----C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeeccc
Q 014593 177 FFASMVVDAVGAIGD--G----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (422)
Q Consensus 177 ~l~~lv~~ai~~v~~--~----~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~ 249 (422)
.|++++++|+..++. . . |.++|++++++|+++++|++++|++|++++.++. ||+.++||||++++++|++
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~---m~~~i~n~kIlll~~~Le~ 235 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQG---MPTRVKNAKIACLDFNLQK 235 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCC---CcccccCCcEEEEeccCCC
Confidence 999999999999852 1 1 6788999999999999999999999999999874 6999999999999999999
Q ss_pred cccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHh
Q 014593 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (422)
Q Consensus 250 ~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~t 329 (422)
.+++.+.++.++++++++.+.+.|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||++|
T Consensus 236 ~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 236 TKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred CccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEceeccCC------CCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Q 014593 330 GGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (422)
Q Consensus 330 Ga~ii~~~~~l------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~ 403 (422)
||+++++++++ +++.+|+|++|+++++++++|++|+||+++++|||+|||+|+.+++|.+|+++||++++++++
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~ 395 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTL 395 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998665 334799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEecCCHHHHhhhc
Q 014593 404 KNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 404 ~~~~vv~GGG~~E~~ls~ 421 (422)
++|++|||||++|++||+
T Consensus 396 ~~~~vvpGGGa~e~~ls~ 413 (527)
T cd03335 396 ESNSVVPGGGAVETALSI 413 (527)
T ss_pred hCCCEeeCCCHHHHHHHH
Confidence 999999999999999985
No 13
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-84 Score=668.13 Aligned_cols=399 Identities=34% Similarity=0.549 Sum_probs=382.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccCCC
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 96 (422)
.+..+.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccccccchhH
Q 014593 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (422)
Q Consensus 97 ttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (422)
|||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++++++..+ ++.|.++|+||++||+.+++++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~----~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND----RESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHHhccccchhhHH
Confidence 999999999999999999999999999999999999999999999999987544 5789999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC----C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeeccccc
Q 014593 177 FFASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (422)
Q Consensus 177 ~l~~lv~~ai~~v~~~----~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~ 251 (422)
.|++++++|+.+++++ + |.++|.+++++|++++||++++|++|++++.++++ ||+.++||++++++|+|++.+
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~--~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG--GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCC--CCccccCCcEEEEeccccccc
Confidence 9999999999999763 2 67889999999999999999999999999998763 489999999999999999999
Q ss_pred cccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCc-----cHHHHHHHHhCCceeecCCCHHHHHHHH
Q 014593 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVA 326 (422)
Q Consensus 252 ~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~~~~~l~~~~I~~v~~v~~~~l~~ia 326 (422)
++.+..+.++++++++++.++|++++++++++|++.|++||+++++| ++.+++||.++||.+++++++++|+|||
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa 315 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFIC 315 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHH
Confidence 99989999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred HHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 014593 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (422)
Q Consensus 327 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~ 405 (422)
++|||+++++++++++..+|+|+.|++.++|+++|++|++|++ ++.|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 316 ~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 316 KTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred HHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred CcEEecCCHHHHhhhc
Q 014593 406 STVVAGGGAIDVRFYH 421 (422)
Q Consensus 406 ~~vv~GGG~~E~~ls~ 421 (422)
|++|||||++|++||+
T Consensus 396 ~~vvpGGG~~e~~ls~ 411 (515)
T cd03338 396 RALIPGGGAPEIEIAL 411 (515)
T ss_pred CCEEECCCHHHHHHHH
Confidence 9999999999999985
No 14
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.9e-84 Score=664.95 Aligned_cols=398 Identities=33% Similarity=0.545 Sum_probs=380.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccCCCh
Q 014593 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (422)
Q Consensus 18 ~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 97 (422)
...+.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccccccchhHH
Q 014593 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (422)
Q Consensus 98 tt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ 177 (422)
||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++..+ ++.|.++|+|+++||+.+.+.+.
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~~~~ 159 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD----REILIKSATTSLSSKVVSQYSSL 159 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccC----HHHHHHHHHHHhccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999987544 57899999999999999999999
Q ss_pred HHHHHHHHHHhcCCC----C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeecccccc
Q 014593 178 FASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (422)
Q Consensus 178 l~~lv~~ai~~v~~~----~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~ 252 (422)
|++++++|+..++++ . |.++|+++++.|+++++|++++|++|++++.++. +||+.++||||++++++|++.++
T Consensus 160 ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~--~mpk~i~n~kI~ll~~~Le~~~~ 237 (517)
T TIGR02342 160 LAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSA--GGPTRIEKAKIGLIQFQISPPKT 237 (517)
T ss_pred HHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccC--CCCccccCCcEEEEecCCCCCcc
Confidence 999999999999752 2 6789999999999999999999999999998742 47999999999999999999999
Q ss_pred ccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCc-----cHHHHHHHHhCCceeecCCCHHHHHHHHH
Q 014593 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (422)
Q Consensus 253 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~~~~~l~~~~I~~v~~v~~~~l~~ia~ 327 (422)
+....+.+++++++++++++|+++++++++++++.|++||+++++| ++.+++||.++||.+++++++++|+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~ 317 (517)
T TIGR02342 238 DMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICK 317 (517)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCC-ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014593 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (422)
Q Consensus 328 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~ 406 (422)
+|||+++++++++++..+|+|+.|+++++++++|++|++|+++ +.+||+|||||+.+++|.+|+++||++++++++++|
T Consensus 318 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~ 397 (517)
T TIGR02342 318 TIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKR 397 (517)
T ss_pred HHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999874 899999999999999999999999999999999999
Q ss_pred cEEecCCHHHHhhhc
Q 014593 407 TVVAGGGAIDVRFYH 421 (422)
Q Consensus 407 ~vv~GGG~~E~~ls~ 421 (422)
++|||||++|+++|+
T Consensus 398 ~~VpGGGa~e~~ls~ 412 (517)
T TIGR02342 398 GLIPGGGAPEIEIAI 412 (517)
T ss_pred CEEECcCHHHHHHHH
Confidence 999999999999985
No 15
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.3e-84 Score=665.98 Aligned_cols=398 Identities=38% Similarity=0.636 Sum_probs=378.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccCCC
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 96 (422)
++.+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhh-hcccccCCChHHHHHHHHHHHhHhhccccccchh
Q 014593 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (422)
Q Consensus 97 ttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~-~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~~~ 175 (422)
|||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|++ .++|++..+ .+.+.++|+|+++||+.+.++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELG----REALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccc----HHHHHHHHHHHhccccchhhH
Confidence 999999999999999999999999999999999999999999987 488887544 578999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC---C---C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeecc
Q 014593 176 EFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (422)
Q Consensus 176 ~~l~~lv~~ai~~v~~---~---~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~ 248 (422)
+.|++++++|+..++. + . |.++|++++++|+++.+|++++|++|++++.++. ||+.++||+|++++++|+
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~---m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQ---MPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCC---CcceecCCcEEEEecCCC
Confidence 9999999999999852 1 1 6788999999999999999999999999999874 799999999999999999
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHH
Q 014593 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (422)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~ 328 (422)
+.+++.+.++.++++.+++.+.+.|++++.+.+++|++.+++||+++++|++.+++||.++||++++++++++|+|||++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~ 318 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKA 318 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEceeccCC------CCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 014593 329 TGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (422)
Q Consensus 329 tGa~ii~~~~~l------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~ 402 (422)
|||+++++++++ ++.++|+|++|+++++++++|++|+||+++++|||+|||+|+.+++|.+|+++||+++++++
T Consensus 319 tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~ 398 (536)
T TIGR02340 319 TGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRT 398 (536)
T ss_pred hCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998654 34569999999999999999999999998899999999999999999999999999999999
Q ss_pred hcCCcEEecCCHHHHhhhc
Q 014593 403 TKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~ 421 (422)
+++|++|||||++|+++|+
T Consensus 399 ~~~~~vVpGGGa~e~~ls~ 417 (536)
T TIGR02340 399 LESNSVVPGGGAVETALSI 417 (536)
T ss_pred hcCCCEEECCCHHHHHHHH
Confidence 9999999999999999985
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-83 Score=661.59 Aligned_cols=406 Identities=34% Similarity=0.563 Sum_probs=383.6
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCC--CCeEEeccHHHHHhhccccCchhHHHHHHHHh
Q 014593 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDK--GTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~--g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~ 88 (422)
+++++.+..++.+++..|+.|+.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 3456677889999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred cccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcc
Q 014593 89 QDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSS 168 (422)
Q Consensus 89 ~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~s 168 (422)
||+++||||||+|+|+++||++|.+++++|+||+.|++||+.|++.+++.|+++++|++... ..+++.|.++++|+++|
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~L~~ia~t~l~s 160 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDK-TKFRDDLLNIARTTLSS 160 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcc-cccHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999886431 11257899999999999
Q ss_pred ccccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeecc
Q 014593 169 KLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (422)
Q Consensus 169 k~~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~ 248 (422)
|+.+.+.+.|++++++|+..+....+.++|++.+++|+++++|++++|+++++.+.+ .||+.++||+|++++++|+
T Consensus 161 ki~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~----~~~~~~~n~~Ili~~~~Le 236 (519)
T TIGR02341 161 KILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV----NQPKRIENAKILIANTPMD 236 (519)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCC----CCceeeccccEEEEecCCC
Confidence 999999999999999999998543366779999999999999999999999999764 2589999999999999999
Q ss_pred cccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHH
Q 014593 249 LKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (422)
Q Consensus 249 ~~~~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~ 327 (422)
+.+++. ++++.+++++++..+.+.|++++.++++.|++.|+++++++++|++.+++||.+++|+++++++..+|+|||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~ 316 (519)
T TIGR02341 237 TDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLAL 316 (519)
T ss_pred CCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999886 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 014593 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNST 407 (422)
Q Consensus 328 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~ 407 (422)
+|||++++++++++++++|+|+.|++..+|+++|++|+||++++.|||+|||+|+.+++|.+|+++||++++++++++++
T Consensus 317 ~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~ 396 (519)
T TIGR02341 317 VTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESR 396 (519)
T ss_pred HhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHhhhc
Q 014593 408 VVAGGGAIDVRFYH 421 (422)
Q Consensus 408 vv~GGG~~E~~ls~ 421 (422)
+||||||+|+++|+
T Consensus 397 vvpGGGa~e~~ls~ 410 (519)
T TIGR02341 397 TVLGGGCSEMLMSK 410 (519)
T ss_pred EEeCCCHHHHHHHH
Confidence 99999999999985
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-82 Score=654.73 Aligned_cols=402 Identities=26% Similarity=0.502 Sum_probs=378.3
Q ss_pred hccccccccccH-HHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhc
Q 014593 11 LLKEGTDTSQGK-AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (422)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~ 89 (422)
+++++.++..|. +++..|+.||..++++++|||||+||+|||++++|+++|||||+||+++|+++||+++|+++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sq 84 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQ 84 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHH
Confidence 445654566665 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcc-cccCCChHHHHHHHHHHHhHhhcc
Q 014593 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAK-SIEGQSLEEKKRLLSKCAATTLSS 168 (422)
Q Consensus 90 ~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~-~v~~~~~~~~~~~l~~va~tsl~s 168 (422)
++++||||||+|||+++||+++.+++++|+||..|++||+.|++.+++.|+++++ +++..+ +.+.+.++++|+++|
T Consensus 85 d~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~tsl~s 161 (531)
T TIGR02346 85 ENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVR---NKKELIKALKASISS 161 (531)
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCC---CHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999986 664322 257899999999999
Q ss_pred ccccchhHHHHHHHHHHHHhcCCC---C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEe
Q 014593 169 KLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (422)
Q Consensus 169 k~~~~~~~~l~~lv~~ai~~v~~~---~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (422)
|+.++ ++.|++++++|+..++++ . |.+.|++++++|++.+||++++|++|++++. .||+.++||||++++
T Consensus 162 K~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~-----~~~k~i~n~kI~l~~ 235 (531)
T TIGR02346 162 KQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE-----GSVKRVKNAKVAVFS 235 (531)
T ss_pred ccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC-----CCceeccCCCEEEEe
Confidence 99887 999999999999999753 2 6789999999999999999999999999853 258999999999999
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHH
Q 014593 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (422)
Q Consensus 245 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ 324 (422)
+|+++.+++.+..+.++++.++.++.+.|+++++++++++++.|++||+++++|+|.+++||.++||+++++++..+|+|
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~ 315 (531)
T TIGR02346 236 CPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRR 315 (531)
T ss_pred cCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCC-CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Q 014593 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (422)
Q Consensus 325 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~-~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~ 403 (422)
||.+|||++++++++++++++|+|+.|++.++|+++|.+|+++. .++.+||+|||||+.+++|.+|+++||++++++++
T Consensus 316 Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai 395 (531)
T TIGR02346 316 LCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALV 395 (531)
T ss_pred HHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987 57899999999999999999999999999999999
Q ss_pred cCCcEEecCCHHHHhhhc
Q 014593 404 KNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 404 ~~~~vv~GGG~~E~~ls~ 421 (422)
++|++|||||++|+++|+
T Consensus 396 ~~~~vVpGGG~~e~~ls~ 413 (531)
T TIGR02346 396 KDNRFLPGAGATEIELAL 413 (531)
T ss_pred cCCCEEECcCHHHHHHHH
Confidence 999999999999999985
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-81 Score=641.97 Aligned_cols=373 Identities=29% Similarity=0.486 Sum_probs=353.9
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccc
Q 014593 13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (422)
Q Consensus 13 ~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~ 92 (422)
+++.++..|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 2 NPKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccC-CChHHHHHHHHHHHhHhhccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEG-QSLEEKKRLLSKCAATTLSSKLI 171 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~-~~~~~~~~~l~~va~tsl~sk~~ 171 (422)
+||||||+++|+++|++++.+++++|+||..|++||++|.+.++++|++++.+++. .+ ++.+.++|++|++||+.
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~----~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTD----RELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999998864 23 57899999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCCC---CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeecc
Q 014593 172 GGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (422)
Q Consensus 172 ~~~~~~l~~lv~~ai~~v~~~~---~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~ 248 (422)
+.+.+.|++++++|+..++++. |.+.|++++++|++++||++++|++|++++.+|+| |++++||+|++++++|+
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m---~~~~~n~~Ill~~~~le 234 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM---PKRVENAYILTCNVSLE 234 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCC---CccccCceEEEEeCCCC
Confidence 9999999999999999998643 77889999999999999999999999999999874 89999999999999999
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHH
Q 014593 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (422)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~ 328 (422)
+.+++.+..+.+ +||+++++|+|.++++|.++||++++++++++|+|||++
T Consensus 235 ~~~~~~~~~~~~-----------------------------~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~ 285 (484)
T cd03342 235 YEKTEVNSGFFY-----------------------------SVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLA 285 (484)
T ss_pred CCccccCcEEEE-----------------------------EEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHH
Confidence 988776555443 299999999999999999999999999999999999999
Q ss_pred hCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Q 014593 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (422)
Q Consensus 329 tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~v 408 (422)
|||+++++++++++++||+|++|+++++|+++|++|+||++++.+||+|||+|+.+++|.+|+++||++++++++++|++
T Consensus 286 tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~ 365 (484)
T cd03342 286 CGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCV 365 (484)
T ss_pred hCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHhhhc
Q 014593 409 VAGGGAIDVRFYH 421 (422)
Q Consensus 409 v~GGG~~E~~ls~ 421 (422)
||||||+|++||+
T Consensus 366 vpGGGa~e~~ls~ 378 (484)
T cd03342 366 VPGAGAFEVALYA 378 (484)
T ss_pred EeCCCHHHHHHHH
Confidence 9999999999985
No 19
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-81 Score=577.45 Aligned_cols=410 Identities=37% Similarity=0.590 Sum_probs=389.8
Q ss_pred hhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCC--CCCeEEeccHHHHHhhccccCchhHHHHH
Q 014593 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVD 84 (422)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~--~g~~~iTndg~tIl~~l~~~hP~~~ll~~ 84 (422)
+|.++++++..+++|+.||.+.|.++.+++|++||||||+||+||++.. .|.+.+||||+|||+++.+.+|.|+++++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 4677889999999999999999999999999999999999999999975 46799999999999999999999999999
Q ss_pred HHHhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhH
Q 014593 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (422)
Q Consensus 85 ~~~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~t 164 (422)
.++-||+++|||||++++|+++||++|.+|+.+.+||..|+.||++|.+.|++.|.+.++.-. .+.+.++++|+++++|
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns-~~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNS-SDKEKFREDLLKIART 160 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887643 3556789999999999
Q ss_pred hhccccccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEe
Q 014593 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (422)
Q Consensus 165 sl~sk~~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (422)
.|+||++++..++|++|+++|+.++...+|++.|+|++..||+++||++-+|+++++.+.. ++|++++|++||+-|
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv----~qpkriena~iLIAN 236 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV----NQPKRIENAKILIAN 236 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC----CCcccccccceEEec
Confidence 9999999999999999999999999766689999999999999999999999999998764 469999999999999
Q ss_pred eecccccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHH
Q 014593 245 IELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (422)
Q Consensus 245 ~~L~~~~~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~ 323 (422)
.+.+..+.+. .+.+..++...+.++...|++.++..+++|.++|+|++++.+-|.++..++|.+.||+++.+.+.+-+|
T Consensus 237 T~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiE 316 (527)
T KOG0363|consen 237 TPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIE 316 (527)
T ss_pred CCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHH
Confidence 9999887765 677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Q 014593 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (422)
Q Consensus 324 ~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~ 403 (422)
|++.+||+.|++.+|.++..++|+|+.+++.-+|++++++|+||+....|||+|||++++++||.+|++|||||++....
T Consensus 317 RLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv 396 (527)
T KOG0363|consen 317 RLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 396 (527)
T ss_pred HHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred cCCcEEecCCHHHHhhhc
Q 014593 404 KNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 404 ~~~~vv~GGG~~E~~ls~ 421 (422)
+++|++.||||.||.+|.
T Consensus 397 ~esrvv~GgG~sEm~Ma~ 414 (527)
T KOG0363|consen 397 KESRVVLGGGCSEMLMAK 414 (527)
T ss_pred ccceeeecCCcHHHHHHH
Confidence 999999999999999885
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-80 Score=630.87 Aligned_cols=363 Identities=32% Similarity=0.621 Sum_probs=344.7
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcc
Q 014593 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (422)
+++++.++..|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 83 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccc
Q 014593 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (422)
Q Consensus 91 ~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~ 170 (422)
+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++..+ ++.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sK~ 159 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND----RAQMLKIIKSCIGTKF 159 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCC----HHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999999999999999999999999987654 5789999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCCC-----Ccc---ceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEE
Q 014593 171 IGGEKEFFASMVVDAVGAIGDGD-----RLN---MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (422)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~v~~~~-----~~~---~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll 242 (422)
.++|.+.|++++++|+..+++++ +.+ +|+|++++|++++||++++|++|++++.++. ||++++||||++
T Consensus 160 ~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~---m~~~~~n~kIll 236 (480)
T cd03337 160 VSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK---MRRRIENPRIVL 236 (480)
T ss_pred chhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC---CCcEecCCCEEE
Confidence 99999999999999999997541 123 5899999999999999999999999998864 799999999999
Q ss_pred EeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHH
Q 014593 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (422)
Q Consensus 243 ~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l 322 (422)
++++|++ ||+++++|++.+++||.++||++++++++++|
T Consensus 237 l~~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L 275 (480)
T cd03337 237 LDCPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDN 275 (480)
T ss_pred EecCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHH
Confidence 9999875 99999999999999999999999999999999
Q ss_pred HHHHHHhCCeEceeccCCCCCCccc-cceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 014593 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (422)
Q Consensus 323 ~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~ 401 (422)
+|||++|||++++++++++++.||+ |+.++++++++++|++|++|++++.|||+|||+++.+++|++|+++||++++++
T Consensus 276 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~ 355 (480)
T cd03337 276 NRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARN 355 (480)
T ss_pred HHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 678888889999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEecCCHHHHhhhc
Q 014593 402 ATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 402 ~~~~~~vv~GGG~~E~~ls~ 421 (422)
++++|++|||||++||++|+
T Consensus 356 ~~~~~~~vpGGGa~E~~ls~ 375 (480)
T cd03337 356 IILNPKLVPGGGATEMAVSH 375 (480)
T ss_pred HhcCCCEEeCCCHHHHHHHH
Confidence 99999999999999999985
No 21
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-81 Score=577.42 Aligned_cols=398 Identities=35% Similarity=0.560 Sum_probs=378.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccCCC
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 96 (422)
...+..+.|.+||+|++++++.++|||||+||||||++++|+++|||||+|||+.|++-||+++|+++.+.+||.++|||
T Consensus 20 d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDG 99 (534)
T KOG0358|consen 20 DKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDG 99 (534)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCC
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccccccchhH
Q 014593 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (422)
Q Consensus 97 ttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~~~~ 176 (422)
|||+|+|+++||+.+..|+++|+||+.|.+.|+.|.++++++|++++.|++.+| ++.|.+-+.|||+||+.+++..
T Consensus 100 TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsd----re~Li~~atTsLnSKvvSq~s~ 175 (534)
T KOG0358|consen 100 TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSD----RESLIKSATTSLNSKVVSQYSS 175 (534)
T ss_pred ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCc----HHHHHHHHHhHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999887 7889999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-C---C-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeeccccc
Q 014593 177 FFASMVVDAVGAIGD-G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (422)
Q Consensus 177 ~l~~lv~~ai~~v~~-~---~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~ 251 (422)
.++.+.++|+.++.. . + |..+|++++..||.++|+++++|++|++...... -|++++++||-++.|.|+.++
T Consensus 176 llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~---gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 176 LLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSA---GPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred ccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCC---CcchhhhceeeEEEEEecCCC
Confidence 999999999999864 2 2 7899999999999999999999999998765332 489999999999999999999
Q ss_pred cccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCc-----cHHHHHHHHhCCceeecCCCHHHHHHHH
Q 014593 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVA 326 (422)
Q Consensus 252 ~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~~~~~l~~~~I~~v~~v~~~~l~~ia 326 (422)
++....+.++.+.+++++++.|++|+.+++++|++.|++|++.|++| +|+++|||.+.+|+++..+.++++|-++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefic 332 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFIC 332 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHH
Confidence 99999999999999999999999999999999999999999999887 7899999999999999999999999999
Q ss_pred HHhCCeEceeccCCCCCCccccceEEEEEE-CCEEEEEEEcCCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhc
Q 014593 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQV-GNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (422)
Q Consensus 327 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~-g~~~~~~~~~~~~-~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~ 404 (422)
+.+|..++.+++.++++.||+++.+++... |+.+++.+.|+.+ .+.+||++||++...++|.+|++|||||++|.+++
T Consensus 333 k~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk 412 (534)
T KOG0358|consen 333 KTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVK 412 (534)
T ss_pred hhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhh
Confidence 999999999999999999999999999755 4559999999877 57899999999999999999999999999999999
Q ss_pred CCcEEecCCHHHHhhhc
Q 014593 405 NSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 405 ~~~vv~GGG~~E~~ls~ 421 (422)
.+.++||||+.||.+|.
T Consensus 413 ~r~li~GGGapEieia~ 429 (534)
T KOG0358|consen 413 KRALIAGGGAPEIEIAL 429 (534)
T ss_pred ccceecCCCCcchHHHH
Confidence 99999999999999875
No 22
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-78 Score=615.11 Aligned_cols=398 Identities=37% Similarity=0.570 Sum_probs=380.6
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccC
Q 014593 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (422)
+.++.+|.+||..|+.|+..+++++|+||||+||+|||+++.|+++|||||+||+++|+++||.++|++++|++||+++|
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccccccch
Q 014593 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (422)
Q Consensus 95 DGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~~ 174 (422)
|||||++||+++||+++.+++++|+||+.|++||++|.+.+.++|++.+++++..+ .+. +++.++++||..+++
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~----~~~--~~~~t~v~sk~~~~~ 156 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE----EEL--KIAITSVASKSANSD 156 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch----hhh--hhhhheeeeeeccCh
Confidence 99999999999999999999999999999999999999999999999999998764 222 899999999988766
Q ss_pred hHHHHHHHHHHHHhcCCCC-CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCc-ceeeCceEEEEeeecccccc
Q 014593 175 KEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP-KKFLNPKILLLNIELELKSE 252 (422)
Q Consensus 175 ~~~l~~lv~~ai~~v~~~~-~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~-~~~~n~kIll~~~~L~~~~~ 252 (422)
+.|++++++|+..++..+ |.+.|.+++..|++..++++++|++|++++.+|+| || +.++||+|+++|++|++.++
T Consensus 157 -~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~--~~~~~~e~~~Ili~d~~l~~~k~ 233 (524)
T COG0459 157 -EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF--MPDKRLENPKILLLDKKLEIKKP 233 (524)
T ss_pred -HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC--CCccccccceEEEEccccccccc
Confidence 999999999999998754 67899999999999999999999999998888886 88 89999999999999999999
Q ss_pred ccCceEEecCHHHHHHHHHHHH-HHHHHHHHHHHhcCCe-EEEecCCccHHHHHHHHhCCceeecCCCHHHH-HHHHHHh
Q 014593 253 KENAEIRLSDPSQYQSIVDAEW-NIIYDKLDKCVQSGAK-VVLSRLAIGDLATQYFADRDIFCAGRVAEEDL-LRVAAAT 329 (422)
Q Consensus 253 ~~~~~i~i~~~~~~~~~~~~E~-~~l~~~v~~i~~~~~~-lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l-~~ia~~t 329 (422)
+.+.++.+++..++..+.+.|+ +.+...++++.+.+++ +++++++|+|.+++||.+.+|++++++.++++ ++|++++
T Consensus 234 ~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 234 ELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred cCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence 9999999999999999999998 9999999999999999 99999999999999999999999999999999 7999999
Q ss_pred CCeEceeccCCCCCCccc--cceEEEEEECCEEEEEEEcCCC--CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 014593 330 GGTVQTSVNNVVDEVLGT--CEHFEERQVGNERFNIFSGCPS--GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (422)
Q Consensus 330 Ga~ii~~~~~l~~~~lG~--~~~v~~~~~g~~~~~~~~~~~~--~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~ 405 (422)
||.+++.++++++..+|. |..|++..++++++.+|++|+. ++.|||+|||+++.+++|.+|+++|||+++++++++
T Consensus 314 ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~ 393 (524)
T COG0459 314 GAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393 (524)
T ss_pred CceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 9999999999999999999986 789999999999999999999999999999999999
Q ss_pred CcEEecCCHHHHhhhc
Q 014593 406 STVVAGGGAIDVRFYH 421 (422)
Q Consensus 406 ~~vv~GGG~~E~~ls~ 421 (422)
|++|||||++|+++|+
T Consensus 394 g~iV~GGGa~e~~~a~ 409 (524)
T COG0459 394 GKIVPGGGAAEIEAAL 409 (524)
T ss_pred CCeEeCCCHHHHHHHH
Confidence 9999999999999985
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.5e-77 Score=611.59 Aligned_cols=356 Identities=45% Similarity=0.728 Sum_probs=342.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccCCCh
Q 014593 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (422)
Q Consensus 18 ~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 97 (422)
..++.+++..|++||..++++++|||||+|++|||+++.|++++||||+||+++|+++||+++|+++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccccccchhHH
Q 014593 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (422)
Q Consensus 98 tt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ 177 (422)
||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++++..+ ++.+.++++|+++||+.+.|++.
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~~ 158 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVED----REELLKVATTSLNSKLVSGGDDF 158 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCC----HHHHHHHhHhcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999965544 68899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC---CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeecccccccc
Q 014593 178 FASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKE 254 (422)
Q Consensus 178 l~~lv~~ai~~v~~~~---~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~ 254 (422)
+++++++|+..+++++ +.+.|+|++++||+++||++++|++|++++.+|+| |+.++||||++++++|++
T Consensus 159 l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m---~~~~~n~~Ili~~~~Le~----- 230 (464)
T cd00309 159 LGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM---PKRLENAKILLLDCKLEY----- 230 (464)
T ss_pred HHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCC---ceeecCceEEEEecCcce-----
Confidence 9999999999998742 57899999999999999999999999999999875 899999999999999975
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHhCCeEc
Q 014593 255 NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (422)
Q Consensus 255 ~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ii 334 (422)
||+++++|++.++++|.++||++++++++++|+|||++|||+++
T Consensus 231 ------------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii 274 (464)
T cd00309 231 ------------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIV 274 (464)
T ss_pred ------------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCH
Q 014593 335 TSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414 (422)
Q Consensus 335 ~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~ 414 (422)
+++++++++.+|+|+.|++.++|+++|++|++|+.++.|||+|||+|+.+++|.+|+++||++++++++++|++|||||+
T Consensus 275 ~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa 354 (464)
T cd00309 275 SRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGA 354 (464)
T ss_pred cccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q 014593 415 IDVRFYH 421 (422)
Q Consensus 415 ~E~~ls~ 421 (422)
+|+++|+
T Consensus 355 ~E~~ls~ 361 (464)
T cd00309 355 AEIELSK 361 (464)
T ss_pred HHHHHHH
Confidence 9999986
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-76 Score=602.08 Aligned_cols=356 Identities=29% Similarity=0.528 Sum_probs=335.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccCCChh
Q 014593 19 SQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTT 98 (422)
Q Consensus 19 ~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGtt 98 (422)
..+.+++..|+.||.++++++++||||+|++|||++.+|+++|||||+||+++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhccc-ccCCChHHHHHHHHHHHhHhhccccccchhHH
Q 014593 99 TVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKS-IEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (422)
Q Consensus 99 t~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~-v~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ 177 (422)
|+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++ +...+ +.+.+.++++|+++||..+ +++.
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~t~l~sk~~~-~~~~ 159 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR---NKEEVSKALKTAIASKQYG-NEDF 159 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcc---CHHHHHHHHHHHhcccccc-hHHH
Confidence 99999999999999999999999999999999999999999999876 43321 2578999999999999976 7899
Q ss_pred HHHHHHHHHHhcCCC--C--CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeeccccccc
Q 014593 178 FASMVVDAVGAIGDG--D--RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEK 253 (422)
Q Consensus 178 l~~lv~~ai~~v~~~--~--~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~ 253 (422)
|++++++|+..++++ . +.++|+|++++|++.+||++++|++|++.+. .+++.++||+|++++++|++
T Consensus 160 l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~-----~~~~~~~n~~Ili~~~~Le~---- 230 (472)
T cd03341 160 LSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE-----GSVKRVKKAKVAVFSCPFDI---- 230 (472)
T ss_pred HHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC-----CCceeccCCcEEEEeccccC----
Confidence 999999999999864 2 6789999999999999999999999987653 24688999999999999975
Q ss_pred cCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHhCCeE
Q 014593 254 ENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTV 333 (422)
Q Consensus 254 ~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~i 333 (422)
|++||+++++|++.+++||+++||++++++++++|+|||++|||++
T Consensus 231 ----------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~i 276 (472)
T cd03341 231 ----------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATP 276 (472)
T ss_pred ----------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEE
Confidence 8899999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCccccceEEEEEECCEEEEEEEcCCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecC
Q 014593 334 QTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGG 412 (422)
Q Consensus 334 i~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GG 412 (422)
++++++++++.+|+|+.|++.++|+++|++|++|++ ++.|||+|||+++.+++|.+|+++||++++++++++|++||||
T Consensus 277 i~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGG 356 (472)
T cd03341 277 LPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGA 356 (472)
T ss_pred ecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCc
Confidence 999999999999999999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred CHHHHhhhc
Q 014593 413 GAIDVRFYH 421 (422)
Q Consensus 413 G~~E~~ls~ 421 (422)
|++|+++|+
T Consensus 357 G~~e~~ls~ 365 (472)
T cd03341 357 GATEIELAK 365 (472)
T ss_pred CHHHHHHHH
Confidence 999999985
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=7.4e-75 Score=597.03 Aligned_cols=379 Identities=42% Similarity=0.684 Sum_probs=360.2
Q ss_pred HHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccCCChhHHHHHHHHHHHHHHhH
Q 014593 35 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPF 114 (422)
Q Consensus 35 l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlL~~~ll~~a~~l 114 (422)
|++++++||||+|++|||++.+|++++||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccccccchhHHHHHHHHHHHHhcCCCCC
Q 014593 115 IEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR 194 (422)
Q Consensus 115 i~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~lv~~ai~~v~~~~~ 194 (422)
+++|+||..|++||+.|++.+++.|++++++++..+ +.+.++++|++++|+.+.|.+.|++++++|+..+....|
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-----~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~ 155 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-----ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFD 155 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-----HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHH
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-----hhhhhhhcccccccccccchhhhhhhHHHHHHhhccccc
Confidence 999999999999999999999999999999988653 789999999999999999999999999999944432225
Q ss_pred ccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHH
Q 014593 195 LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEW 274 (422)
Q Consensus 195 ~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~ 274 (422)
.+.++++++.|++.+||++++|++|++++.++ +||++++||+|++++++|++.++ .+.++.+++.++++.+.+.|+
T Consensus 156 ~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~---~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~ 231 (485)
T PF00118_consen 156 LDNIKIIKIPGGSISDSELINGIVLDKGFSSP---NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEK 231 (485)
T ss_dssp GGGEEEEEEESSSSGGEEEESEEEESSSBSST---TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHH
T ss_pred ccchhhhhhccccccccccccceeeecccccc---ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhh
Confidence 67799999999999999999999999999987 46899999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHhCCeEceeccCCCCCCccccceEEEE
Q 014593 275 NIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEER 354 (422)
Q Consensus 275 ~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~ 354 (422)
++++++++++.+.|++||+++++|++.++++|.++||.++++++.++|++|+++|||++++++++++++.+|+|+.++++
T Consensus 232 ~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~ 311 (485)
T PF00118_consen 232 KYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEER 311 (485)
T ss_dssp HHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEE
T ss_pred hhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred EECCEEEEEEE--cCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhcC
Q 014593 355 QVGNERFNIFS--GCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYHI 422 (422)
Q Consensus 355 ~~g~~~~~~~~--~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~ 422 (422)
.+++++|++|+ +|..++.+||+|||+++.+++|.+++++||++++++++++|++|||||++|++||++
T Consensus 312 ~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~ 381 (485)
T PF00118_consen 312 EIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKA 381 (485)
T ss_dssp EETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHH
T ss_pred ccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhh
Confidence 99999999999 588889999999999999999999999999999999999999999999999999863
No 26
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-77 Score=559.94 Aligned_cols=410 Identities=29% Similarity=0.564 Sum_probs=394.4
Q ss_pred CchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHH
Q 014593 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (422)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~ 84 (422)
|++|+-.+..+..+..|..+...|++|+.+++|+++|++||+.|.||+.++.|.+..||||..||+++++.||.|+-+.+
T Consensus 1 m~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmie 80 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIE 80 (527)
T ss_pred CCCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhh
Confidence 45677777788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhH
Q 014593 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (422)
Q Consensus 85 ~~~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~t 164 (422)
.+.+||+++||||||+++|++++|.++..++++|+||..|+++|.+|++.++..+++++.|++..+ ...+.+++.+
T Consensus 81 l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~----~~km~~vi~~ 156 (527)
T KOG0364|consen 81 LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKD----QAKMLRVINS 156 (527)
T ss_pred hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCccc----HHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999876 6789999999
Q ss_pred hhccccccchhHHHHHHHHHHHHhcCCCC----C-ccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCce
Q 014593 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGD----R-LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPK 239 (422)
Q Consensus 165 sl~sk~~~~~~~~l~~lv~~ai~~v~~~~----~-~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~k 239 (422)
++.+|+.+.|.+..+++..+|+..++.++ | ..+.++.+++||.+++|++++|+.+.+...||. |.+.++|||
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpk---mrr~Ienpr 233 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPK---MRRAIENPR 233 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHH---HHHHhhcCc
Confidence 99999999999999999999999998763 4 367889999999999999999999999999986 578999999
Q ss_pred EEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCH
Q 014593 240 ILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (422)
Q Consensus 240 Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~ 319 (422)
|+|+|+||+|++.++++.+.+..-+++.+.++.|++++...++.|....++||++.++++|.++|||.+.||++++++++
T Consensus 234 ivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rK 313 (527)
T KOG0364|consen 234 IVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRK 313 (527)
T ss_pred EEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEceeccCCCCCCccc-cceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHH
Q 014593 320 EDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (422)
Q Consensus 320 ~~l~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~ 398 (422)
.|-.|++++|||.++++.+++.+.+.|+ |+.|+..++|+++|.||..|+.|+.|||++|||++.+++|.+|.++||..+
T Consensus 314 tDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~v 393 (527)
T KOG0364|consen 314 TDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGV 393 (527)
T ss_pred cccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999996 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEecCCHHHHhhhc
Q 014593 399 VRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 399 ~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
.|+.+-+|+++|||||+||++|+
T Consensus 394 arn~ii~PklvPGGGAtEMAvs~ 416 (527)
T KOG0364|consen 394 ARNVIINPKLVPGGGATEMAVSH 416 (527)
T ss_pred HHHhccCCcccCCccHHHHHHHH
Confidence 99999999999999999999985
No 27
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-74 Score=544.08 Aligned_cols=400 Identities=36% Similarity=0.606 Sum_probs=377.4
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccccC
Q 014593 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (422)
+.+...|+.+|..|..|+.++++++++||||-|++||++|+.|++.+||||+|||+.+.++||++++|++.++.|++++|
T Consensus 11 ~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evg 90 (545)
T KOG0360|consen 11 KGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVG 90 (545)
T ss_pred cCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhcccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhh-hcccccCCChHHHHHHHHHHHhHhhccccccc
Q 014593 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (422)
Q Consensus 95 DGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~-~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~ 173 (422)
||||++++++++|++++.+|+..++||+.|++||+.|+..+++++.+ .++|++... +..|.++++|+++||++..
T Consensus 91 Dgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg----~~~Lin~~ktsmsSK~i~~ 166 (545)
T KOG0360|consen 91 DGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLG----TQILINLAKTSMSSKIIGM 166 (545)
T ss_pred CCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcc----hHHHHHHHHhhhcceeccc
Confidence 99999999999999999999999999999999999999999999975 688887765 6899999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCC--C-----CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeee
Q 014593 174 EKEFFASMVVDAVGAIGDG--D-----RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (422)
Q Consensus 174 ~~~~l~~lv~~ai~~v~~~--~-----~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~ 246 (422)
..++|+++++||+..+.-- + ..+.+.|.+-.|.+.-||.+++|+.++...++.. ||.++.|+||+++++.
T Consensus 167 ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~---m~~~i~~~Kiacld~~ 243 (545)
T KOG0360|consen 167 DSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQM---MPLRIKNAKIACLDFT 243 (545)
T ss_pred chHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhc---cccccccceeeeEecc
Confidence 9999999999999887532 1 5788999999999999999999999999888643 7999999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHH
Q 014593 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVA 326 (422)
Q Consensus 247 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia 326 (422)
|...+.+....+.+.+++.++++.+.|....++.+++|.+.|+|||+++++|||++++||.++|+++++|+++++|++|+
T Consensus 244 Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~ia 323 (545)
T KOG0360|consen 244 LQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIA 323 (545)
T ss_pred cccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHH
Confidence 99888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEceeccCC------CCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 014593 327 AATGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (422)
Q Consensus 327 ~~tGa~ii~~~~~l------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~ 400 (422)
++||+++++++.++ ++..+|+|+.|.+.+|+++.++++.|.+.. .|+|+|||++++.+||++|.+|||+++++
T Consensus 324 katGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~Vlk 402 (545)
T KOG0360|consen 324 KATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLK 402 (545)
T ss_pred HhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHH
Confidence 99999999999855 456799999999999999999999998776 99999999999999999999999999999
Q ss_pred HHhcCCcEEecCCHHHHhhhcC
Q 014593 401 RATKNSTVVAGGGAIDVRFYHI 422 (422)
Q Consensus 401 ~~~~~~~vv~GGG~~E~~ls~~ 422 (422)
..++.+++||||||+|.+|+-|
T Consensus 403 rtLes~~vvpGGG~vE~aLs~y 424 (545)
T KOG0360|consen 403 RTLESKSVVPGGGAVETALSIY 424 (545)
T ss_pred HHhccCccccCccHHHHHHHHH
Confidence 9999999999999999999864
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.4e-71 Score=567.34 Aligned_cols=361 Identities=24% Similarity=0.392 Sum_probs=331.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCc----hhHHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (422)
...+|.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+|||++|+++|| +++|+++++++||++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4567899999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ + .+.|.++|++|+
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~----~~~l~~va~ts~------ 151 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--D----KEEIAQVATISA------ 151 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999999999999999999999886 2 467999999885
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccc----cCCcceeeCceEEEEeeecc
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIELE 248 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~~L~ 248 (422)
++++.+++++++|+..++++ +.|.|.+.+| ...++++++|++|+++|.+|+| ++|++.++||+|+++|++|
T Consensus 152 ~~~~~ls~lv~~Av~~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i- 226 (542)
T PRK00013 152 NGDEEIGKLIAEAMEKVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI- 226 (542)
T ss_pred cchHHHHHHHHHHHHHhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc-
Confidence 37889999999999999754 3477776666 6789999999999999999998 3578999999999999965
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCC------ceeecCCC----
Q 014593 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGRVA---- 318 (422)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~------I~~v~~v~---- 318 (422)
+++++ +.++++++.+.|++|||++++|++.++++|..++ |+++++++
T Consensus 227 ------------~~~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~ 283 (542)
T PRK00013 227 ------------SNIQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDR 283 (542)
T ss_pred ------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccc
Confidence 34444 5577899999999999999999999999999886 88988776
Q ss_pred -HHHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEEECCEEEEEEEcCCCCc---------------------
Q 014593 319 -EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (422)
Q Consensus 319 -~~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~--------------------- 371 (422)
+++|+|||.+||+++++ +++++++++||+|+.|++. .++|++|++|.+++
T Consensus 284 r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 360 (542)
T PRK00013 284 RKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYD 360 (542)
T ss_pred hhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHH
Confidence 88999999999999999 7999999999999999986 48999999987765
Q ss_pred --------------eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 372 --------------~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|+
T Consensus 361 ~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~ 423 (542)
T PRK00013 361 REKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAP 423 (542)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHH
Confidence 78999999999999999999999999999999997 99999999999985
No 29
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.6e-71 Score=565.87 Aligned_cols=360 Identities=22% Similarity=0.356 Sum_probs=327.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCc----hhHHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (422)
...+|.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++||++
T Consensus 4 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 83 (542)
T PRK12849 4 IIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDV 83 (542)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCc
Confidence 3467899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + .+.|.++|+|++
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~----~~~l~~va~ts~------ 151 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--G----SEEIAQVATISA------ 151 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999886 2 467999999984
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccc-eeeEeeEEEeeccCCcccc----CCcceeeCceEEEEeeec
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~d-s~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~L 247 (422)
++++.+++++++|+..++.+ +.+.+. .|++.+| +++++|++|+++|.+|+|. +|++.++||+|+++|+.|
T Consensus 152 ~~~~~l~~lv~~Av~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i 226 (542)
T PRK12849 152 NGDEEIGELIAEAMEKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI 226 (542)
T ss_pred CChHHHHHHHHHHHHHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc
Confidence 37899999999999999754 233332 6888776 7999999999999999883 578999999999999965
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhC------CceeecCCC---
Q 014593 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (422)
Q Consensus 248 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~------~I~~v~~v~--- 318 (422)
+++++ +.++++++.+.+++|||++++|++.++++|.++ +|+++++++
T Consensus 227 -------------~~~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~ 282 (542)
T PRK12849 227 -------------SSLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGD 282 (542)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccc
Confidence 24443 556789999999999999999999999999988 899998777
Q ss_pred --HHHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEEECCEEEEEEEcCCCC---------------------
Q 014593 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (422)
Q Consensus 319 --~~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~--------------------- 370 (422)
+++|+|||.+|||++++ +++++++++||+|+.|++. .+++++|+||.++
T Consensus 283 ~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~ 359 (542)
T PRK12849 283 RRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTIT---KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDY 359 (542)
T ss_pred hhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEe---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHH
Confidence 56699999999999999 6888988899999999985 4889999988765
Q ss_pred --------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 371 --------------~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|+
T Consensus 360 ~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~ 423 (542)
T PRK12849 360 DREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAK 423 (542)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHH
Confidence 489999999999999999999999999999999998 99999999999985
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.2e-70 Score=567.39 Aligned_cols=360 Identities=24% Similarity=0.380 Sum_probs=329.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCc----hhHHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (422)
+..+|.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++++++|| +++|+++++++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 4678899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+|+|+++||+++.++++.|+||..|++||+.|.+.+++.|+++++|++ + .+.+.++|+|+++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~----~~~l~~va~ts~~----- 164 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--T----KEDILNVATISAN----- 164 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHHcC-----
Confidence 9999999999999999999999999999999999999999999999999999886 2 4679999999864
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccce-eeEeeEEEeeccCCccc----cCCcceeeCceEEEEeeec
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds-~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~~L 247 (422)
+++.+++++++|+..++++ + .|.+.+|++++|+ ++++|++|+++|.+|+| ++|++.++||+|+++|++|
T Consensus 165 -~~~~l~~li~eAv~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L 238 (555)
T PTZ00114 165 -GDVEIGSLIADAMDKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKI 238 (555)
T ss_pred -ChHHHHHHHHHHHHHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCC
Confidence 4678999999999999864 1 2566789999998 79999999999999998 4689999999999999998
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCC------ceeecC-----
Q 014593 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGR----- 316 (422)
Q Consensus 248 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~------I~~v~~----- 316 (422)
+ ++++ +.++++++.+.+++|+|++++|++.++++|..++ |+++++
T Consensus 239 ~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~ 294 (555)
T PTZ00114 239 S-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGD 294 (555)
T ss_pred C-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCc
Confidence 6 2222 6778889999999999999999999999999886 888855
Q ss_pred CCHHHHHHHHHHhCCeEceec------cCCCCCCccccceEEEEEECCEEEEEEEcCC----------------------
Q 014593 317 VAEEDLLRVAAATGGTVQTSV------NNVVDEVLGTCEHFEERQVGNERFNIFSGCP---------------------- 368 (422)
Q Consensus 317 v~~~~l~~ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~---------------------- 368 (422)
+++++|+|||.+|||+++++. +++++++||+|+.|++.+ +++++|+++.
T Consensus 295 ~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~ 371 (555)
T PTZ00114 295 NRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSE 371 (555)
T ss_pred chHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCH
Confidence 788999999999999999997 778888899999999986 5666776665
Q ss_pred -------------CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 369 -------------SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 369 -------------~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
+++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.
T Consensus 372 ~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~ 436 (555)
T PTZ00114 372 YDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASK 436 (555)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHH
Confidence 66899999999999999999999999999999999988 99999999999985
No 31
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.2e-70 Score=561.53 Aligned_cols=359 Identities=23% Similarity=0.386 Sum_probs=328.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCc----hhHHHHHHHHhccccc
Q 014593 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEV 93 (422)
Q Consensus 18 ~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 93 (422)
..+|.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++++++|| +++|+++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 457889999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccccccc
Q 014593 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (422)
Q Consensus 94 GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~~ 173 (422)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ + .+.+.++|+|++++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~----~~~l~~va~ts~~~----- 151 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--T----KEEIAQVATISANG----- 151 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcCC-----
Confidence 999999999999999999999999999999999999999999999999999986 3 46899999999763
Q ss_pred hhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccc-eeeEeeEEEeeccCCcccc----CCcceeeCceEEEEeeecc
Q 014593 174 EKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (422)
Q Consensus 174 ~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~d-s~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~L~ 248 (422)
++.+++++++|+..++.+ +.|.+ .+|++.+| +++++|++|++++.+|+|. +|++.++||+|+++|++|+
T Consensus 152 -~~~l~~lv~~A~~~v~~~---~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~ 225 (520)
T cd03344 152 -DEEIGELIAEAMEKVGKD---GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKIS 225 (520)
T ss_pred -hHHHHHHHHHHHHHhccC---CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCC
Confidence 789999999999999754 23333 58888888 7999999999999999973 3557899999999999963
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCc------eeec-----CC
Q 014593 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAG-----RV 317 (422)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I------~~v~-----~v 317 (422)
++++ +.++++++.+.|++|||++++|++.++++|.+++| ++++ ++
T Consensus 226 -------------~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~ 281 (520)
T cd03344 226 -------------SIQE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDR 281 (520)
T ss_pred -------------CHHH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcc
Confidence 3433 56678999999999999999999999999999998 7765 44
Q ss_pred CHHHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEEECCEEEEEEEcCCCC----------------------
Q 014593 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG---------------------- 370 (422)
Q Consensus 318 ~~~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~---------------------- 370 (422)
++++|+|||.+|||++++ +++++++++||+|+.|++.+ ++++++++|..+
T Consensus 282 ~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 358 (520)
T cd03344 282 RKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYD 358 (520)
T ss_pred cHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 899999999999999999 78888888999999999865 789999988665
Q ss_pred -------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 371 -------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 371 -------------~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
+.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|+
T Consensus 359 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~ 421 (520)
T cd03344 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASP 421 (520)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHH
Confidence 599999999999999999999999999999999998 99999999999986
No 32
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-73 Score=535.77 Aligned_cols=402 Identities=26% Similarity=0.466 Sum_probs=384.3
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhc
Q 014593 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (422)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~ 89 (422)
..+++..+..+-.++..-|+.++..+.+++++.+||.|..||++++.|++.+|+||.+.+++|+++||.+-++..++.+|
T Consensus 4 ~~lnpkAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAq 83 (520)
T KOG0359|consen 4 KLLNPKAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQ 83 (520)
T ss_pred cCCCcHHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHh
Confidence 34566777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccc
Q 014593 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (422)
Q Consensus 90 ~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk 169 (422)
|+..|||||++|+|+++++++|..++..|+||..|++||+.|.+.++++|++.+.+++ ++.|..+++|+|++|
T Consensus 84 dd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-------~~~L~~va~tsl~Tk 156 (520)
T KOG0359|consen 84 DDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-------RETLKDVARTSLRTK 156 (520)
T ss_pred hcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-------HHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999999999999997666554 689999999999999
Q ss_pred cccchhHHHHHHHHHHHHhcCCCC---CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeee
Q 014593 170 LIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (422)
Q Consensus 170 ~~~~~~~~l~~lv~~ai~~v~~~~---~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~ 246 (422)
+.....+.+++++++|+..+.... |..++.+++...++..|+.+++|+++||+..||. ||++++|+.||++|.+
T Consensus 157 v~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpd---mp~~~e~a~iL~~NvS 233 (520)
T KOG0359|consen 157 VHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD---MPRRVEDAYILICNVS 233 (520)
T ss_pred ccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcc---cccchhceEEEEeecc
Confidence 999999999999999999998432 7889999999999999999999999999999997 6999999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCe----EEEecCCccHHHHHHHHhCCceeecCCCHHHH
Q 014593 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK----VVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (422)
Q Consensus 247 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~----lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l 322 (422)
|||++++.|+.+.|++.+|.+.+...|++++.+.+++|++++.. ||++|+||||..++.|++.||++++|.+++.|
T Consensus 234 LEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNm 313 (520)
T KOG0359|consen 234 LEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNM 313 (520)
T ss_pred ccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999988754 67899999999999999999999999999999
Q ss_pred HHHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 014593 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (422)
Q Consensus 323 ~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~ 402 (422)
||+..+||+..+++++|++++.+|+|+.+++.++|+++|+|+++|++|++|||+++||+++.+.++|++++|++++++++
T Consensus 314 ERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~nt 393 (520)
T KOG0359|consen 314 ERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNT 393 (520)
T ss_pred HHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEecCCHHHHhhhc
Q 014593 403 TKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~ 421 (422)
+++++++||+|++|.++++
T Consensus 394 l~d~~~i~Gaga~~va~~~ 412 (520)
T KOG0359|consen 394 LEDKCGIPGAGAFEVALGR 412 (520)
T ss_pred hhhcccccCchHHHHHHHH
Confidence 9999999999999999875
No 33
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-70 Score=524.96 Aligned_cols=410 Identities=25% Similarity=0.438 Sum_probs=376.3
Q ss_pred CCcC-Cc-hhhhhcccccccccc-HHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCc
Q 014593 1 MAAM-MQ-PQIILLKEGTDTSQG-KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP 77 (422)
Q Consensus 1 ~~~~-~~-~~~~~~~~~~~~~~~-~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP 77 (422)
|+.+ |. ..-+++++|.++.+| +++..+|+.||+.+++++||+|||+||+||++|+.|+..+|||.+||+++|+++||
T Consensus 1 M~~~vp~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP 80 (537)
T KOG0362|consen 1 MALTVPKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP 80 (537)
T ss_pred CCccCCCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc
Confidence 5553 32 345677889877777 56999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHH
Q 014593 78 AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRL 157 (422)
Q Consensus 78 ~~~ll~~~~~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~ 157 (422)
+++||+++++.|+.+.||||+++|+|+++||++|.+||..|++|..|++||+.|.+.+++.|+++.+..-.+. ++
T Consensus 81 aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~-----~d 155 (537)
T KOG0362|consen 81 AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDL-----ED 155 (537)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccc-----cC
Confidence 9999999999999999999999999999999999999999999999999999999999999998765522111 11
Q ss_pred HHHHHhHhhccccccchhHHHHHHHHHHHHhcCCC--CCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCccee
Q 014593 158 LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG--DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKF 235 (422)
Q Consensus 158 l~~va~tsl~sk~~~~~~~~l~~lv~~ai~~v~~~--~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~ 235 (422)
...++++++.||... ..+++++++++|+..+.+. .+.++|+++++.|+++++|+++.|++|++...- .++..
T Consensus 156 ~~~~~rs~i~skq~~-~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG-----~v~~a 229 (537)
T KOG0362|consen 156 KEWALRSVIMSKQYG-NEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEG-----EVKSA 229 (537)
T ss_pred hHHHHHHHHHHhhcc-hHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccCC-----ccccc
Confidence 227888898888754 5678999999999999876 378999999999999999999999999998752 34778
Q ss_pred eCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeec
Q 014593 236 LNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG 315 (422)
Q Consensus 236 ~n~kIll~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~ 315 (422)
+++||.+++||++..++++++++.+++++++..|.+.|+..++.+++.|.+.|+++|++.+.+++++++||++.+|++++
T Consensus 230 k~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlq 309 (537)
T KOG0362|consen 230 KDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQ 309 (537)
T ss_pred ccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEc-CCCCceEEEEEecCCHHHHHHHHHHHHH
Q 014593 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSG-CPSGRTATIVLRGGADQFIEEAERSLHD 394 (422)
Q Consensus 316 ~v~~~~l~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~-~~~~~~~Till~g~~~~~l~e~~~~i~d 394 (422)
--++.||+||++..||++++++..+.+..+|+|++|..+++|+.+++.|.. +...+..|++|||++...+|+.+|+++|
T Consensus 310 i~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVdd 389 (537)
T KOG0362|consen 310 INSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDD 389 (537)
T ss_pred eccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999975 3356899999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 395 AIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 395 al~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
+++..+...++++++||+|++|++|+.
T Consensus 390 gV~tyK~l~~d~rLlpGagatEieLak 416 (537)
T KOG0362|consen 390 GVNTYKALCSDSRLLPGAGATEIELAK 416 (537)
T ss_pred hHHHhhhhccCCccccCCchhHHHHHH
Confidence 999999999999999999999999985
No 34
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=5.3e-70 Score=559.68 Aligned_cols=360 Identities=22% Similarity=0.374 Sum_probs=326.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCc----hhHHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (422)
...+|.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|+++++++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 3457889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ + .+.+.++++++.
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~----~~~l~~va~ts~------ 150 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--G----KKEIAQVATISA------ 150 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999886 3 468999999984
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCc-cceeeEeeEEEeeccCCccc----cCCcceeeCceEEEEeeec
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~-~ds~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~~L 247 (422)
++++.+++++++|+..++++ +.|.+. .|+.. .++++++|++|+++|.+|+| ++|++.++||+|++++++|
T Consensus 151 ~~~~~l~~lv~~A~~~v~~~---~~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i 225 (524)
T TIGR02348 151 NNDEEIGSLIAEAMEKVGKD---GVITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI 225 (524)
T ss_pred cChHHHHHHHHHHHHHhCcC---CcEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc
Confidence 36889999999999999764 234443 36655 67999999999999999987 3578999999999999975
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhC------CceeecCCCH--
Q 014593 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVAE-- 319 (422)
Q Consensus 248 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~------~I~~v~~v~~-- 319 (422)
+ ++++ +.++++++.+.|++|||++++|++.++++|..+ +|+++++++.
T Consensus 226 ~-------------~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~ 281 (524)
T TIGR02348 226 S-------------NIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGD 281 (524)
T ss_pred C-------------CHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccc
Confidence 3 3333 578889999999999999999999999999876 8889976644
Q ss_pred ---HHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEEECCEEEEEEEcCCCCc--------------------
Q 014593 320 ---EDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR-------------------- 371 (422)
Q Consensus 320 ---~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~-------------------- 371 (422)
++|+|||.+|||++++ +++++++++||+|+.|++.+ +++++++|+.+++
T Consensus 282 ~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~ 358 (524)
T TIGR02348 282 RRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDY 358 (524)
T ss_pred hhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 8999999999999999 89999999999999999864 7889998876654
Q ss_pred ---------------eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 372 ---------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 372 ---------------~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|+
T Consensus 359 ~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~ 422 (524)
T TIGR02348 359 DREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAA 422 (524)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHH
Confidence 68999999999999999999999999999999998 99999999999985
No 35
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.8e-70 Score=559.29 Aligned_cols=361 Identities=23% Similarity=0.354 Sum_probs=328.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCc----hhHHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (422)
...++.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 3557889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++. .+.+.+++++++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~------~~~l~~va~~s~------ 152 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTT------NAEIAQVATISA------ 152 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC------HHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999998862 367899998874
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCcccc----CCcceeeCceEEEEeeecc
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~L~ 248 (422)
++++.|++++++|+..++.+ +.+.+.... +...++++++|++|+++|.+|+|. +||+.++||+|+++|++++
T Consensus 153 ~~~~~l~~lv~~Av~~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~ 228 (541)
T PRK12851 153 NGDAEIGRLVAEAMEKVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS 228 (541)
T ss_pred cChHHHHHHHHHHHHHhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC
Confidence 47899999999999999754 345555544 456789999999999999999873 4899999999999999853
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCc------eeecC-----C
Q 014593 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAGR-----V 317 (422)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I------~~v~~-----v 317 (422)
+.+ .+.++++++.+.+++|||++++|++.++++|..++| +++++ +
T Consensus 229 -------------~~~-----------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~ 284 (541)
T PRK12851 229 -------------NLQ-----------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDR 284 (541)
T ss_pred -------------cHH-----------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccc
Confidence 222 277889999999999999999999999999999997 66664 9
Q ss_pred CHHHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEEECCEEEEEEEcCCCCc---------------------
Q 014593 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (422)
Q Consensus 318 ~~~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~--------------------- 371 (422)
++++|+|||.+|||++++ +++++++++||+|+.|++.+ ++|+++.+|.++.
T Consensus 285 ~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (541)
T PRK12851 285 RKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYD 361 (541)
T ss_pred cHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999 68888888999999999975 8899999887653
Q ss_pred --------------eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 372 --------------~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|+
T Consensus 362 ~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~ 424 (541)
T PRK12851 362 REKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVK 424 (541)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHH
Confidence 88999999999999999999999999999999998 99999999999985
No 36
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.1e-69 Score=555.19 Aligned_cols=361 Identities=22% Similarity=0.370 Sum_probs=325.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCch----hHHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~~~ 92 (422)
...++.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 35678899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++ + .+.|.++++++++
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~~~l~~va~~s~~----- 153 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--S----SKEIAQVATISAN----- 153 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC-----
Confidence 9999999999999999999999999999999999999999999999999999886 2 4679999999854
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccc----cCCcceeeCceEEEEeeecc
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIELE 248 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~~L~ 248 (422)
.++.++++++||+..++++ +.|.+.... ..-.++++++|++|+++|.+|+| .+|++.++||+|+++|+.++
T Consensus 154 -~~~~l~~lv~eAv~~vg~~---g~i~v~~~~-~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~ 228 (544)
T PRK12850 154 -GDESIGEMIAEAMDKVGKE---GVITVEEAK-TLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKIS 228 (544)
T ss_pred -CHHHHHHHHHHHHHHhccc---CceeeEEcc-ccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccC
Confidence 3789999999999999754 223332211 12268899999999999999988 35789999999999999652
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCc------eeecC-----C
Q 014593 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAGR-----V 317 (422)
Q Consensus 249 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I------~~v~~-----v 317 (422)
+.+ .+.++++++.+.|++|||++++|++.++++|.+++| +++++ +
T Consensus 229 -------------~~~-----------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~ 284 (544)
T PRK12850 229 -------------NLQ-----------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDR 284 (544)
T ss_pred -------------CHH-----------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcc
Confidence 222 278889999999999999999999999999999999 88776 9
Q ss_pred CHHHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEEECCEEEEEEEcCCCCc---------------------
Q 014593 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (422)
Q Consensus 318 ~~~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~--------------------- 371 (422)
++++|+|||.+|||++++ +++++++++||+|+.|++.+ +++++|.||.+++
T Consensus 285 ~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (544)
T PRK12850 285 RKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYD 361 (544)
T ss_pred cHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 999999999999999999 68888888999999999864 7899999887654
Q ss_pred --------------eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 372 --------------~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
.+||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|+++|.
T Consensus 362 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~ 424 (544)
T PRK12850 362 REKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARS 424 (544)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHH
Confidence 89999999999999999999999999999999997 99999999999985
No 37
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.3e-68 Score=548.78 Aligned_cols=360 Identities=22% Similarity=0.351 Sum_probs=324.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccc----cCchhHHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDI----VHPAAKILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~----~hP~~~ll~~~~~~~~~~ 92 (422)
....|.++++.|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++|++ +||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 3557789999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+++|+++||+++.+++++|+||..|++||++|++.+++.|+++++|++. .+.+.+++++|.+
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~------~~~l~~va~~s~~----- 153 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVAS------SAEIAQVGTISAN----- 153 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHhhhcC-----
Confidence 99999999999999999999999999999999999999999999999999998863 2458999998854
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCc-cceeeEeeEEEeeccCCccc----cCCcceeeCceEEEEeeec
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~-~ds~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~~L 247 (422)
.++.+++++++|+..++++ +.|.+. .|+.. .++++++|++|+++|.+|+| +.|+..++||+|+++++.+
T Consensus 154 -~~~~l~~li~eA~~~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i 227 (545)
T PRK12852 154 -GDAAIGKMIAQAMQKVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL 227 (545)
T ss_pred -ChHHHHHHHHHHHHHhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc
Confidence 3688999999999999865 233333 36665 68999999999999999986 3478889999999998865
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhC------CceeecCCC---
Q 014593 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (422)
Q Consensus 248 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~------~I~~v~~v~--- 318 (422)
+ +++ .+.+.++.+.+.+++|||++++|++.++++|..+ +|+++++.+
T Consensus 228 ~-------------~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~ 283 (545)
T PRK12852 228 S-------------GLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGD 283 (545)
T ss_pred C-------------CHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCccc
Confidence 3 332 4778899999999999999999999999999875 799997655
Q ss_pred --HHHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEEECCEEEEEEEcCCCC---------------------
Q 014593 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (422)
Q Consensus 319 --~~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~--------------------- 370 (422)
+++|+|||.+|||++++ ++++++++.||+|+.|++.+ +++++|.++..+
T Consensus 284 ~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (545)
T PRK12852 284 RRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDY 360 (545)
T ss_pred chHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999999999 68888888999999999875 688899887653
Q ss_pred --------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 371 --------------~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|+
T Consensus 361 ~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~ 424 (545)
T PRK12852 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKK 424 (545)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHH
Confidence 789999999999999999999999999999999997 99999999999985
No 38
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.1e-68 Score=548.44 Aligned_cols=360 Identities=22% Similarity=0.337 Sum_probs=318.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchh----HHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAA----KILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~----~ll~~~~~~~~~~ 92 (422)
...++.++|++.+++|..++++++|||||+||+|||+++.|+++|||||+||+++|+++||++ +|+++++++|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 456788999999999999999999999999999999999999999999999999999999998 5888899999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+++|+++||++|.+++++|+||..|++||+.|.+.+++.|+++++|++ + .+.|.++|++|++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d----~~~L~~VA~ts~~----- 152 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--D----IQAITQVASISAG----- 152 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHhcc-----
Confidence 9999999999999999999999999999999999999999999999999999986 3 4679999999854
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCC--CccceeeEeeEEEeeccCCccccC----CcceeeCceEEEEeee
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGG--TMRDSFLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLNIE 246 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~--~~~ds~li~Givl~~~~~~~~~~~----~~~~~~n~kIll~~~~ 246 (422)
+++.+++++++|+..++++ . .+.+.++ ...++++++|++|+++|.+|+|.. |+..++||+|++++++
T Consensus 153 -~~~~l~~lv~eAv~~vg~~---g---~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~ 225 (529)
T CHL00093 153 -NDEEVGSMIADAIEKVGRE---G---VISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKK 225 (529)
T ss_pred -ChHHHHHHHHHHHHHhccC---C---ceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCC
Confidence 7899999999999999864 2 2233333 346789999999999999999844 4446999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHH--HHHHh----CCceeecCC---
Q 014593 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLAT--QYFAD----RDIFCAGRV--- 317 (422)
Q Consensus 247 L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~--~~l~~----~~I~~v~~v--- 317 (422)
|++.+. .+.+.++++.+.+++|+|++++|++.++ +++++ .+|++++++
T Consensus 226 le~~~~-----------------------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~ 282 (529)
T CHL00093 226 ITLVQQ-----------------------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFG 282 (529)
T ss_pred CCchHH-----------------------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCC
Confidence 986421 3788889999999999999999998554 45577 589999988
Q ss_pred --CHHHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEEECCEEEEEEEc---------CCCC-----------
Q 014593 318 --AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSG---------CPSG----------- 370 (422)
Q Consensus 318 --~~~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~---------~~~~----------- 370 (422)
++++|+|||.+|||++++ +++++++.+||+|+.|++.+ +++++|++ |+..
T Consensus 283 ~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 359 (529)
T CHL00093 283 DRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSY 359 (529)
T ss_pred cchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHH
Confidence 458899999999999999 68899988999999999864 78888874 2221
Q ss_pred --------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 371 --------------~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|+
T Consensus 360 ~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~ 423 (529)
T CHL00093 360 EKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSE 423 (529)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHH
Confidence 378899999999999999999999999999999998 99999999999985
No 39
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=7.3e-68 Score=544.64 Aligned_cols=360 Identities=21% Similarity=0.344 Sum_probs=324.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhcccc----CchhHHHHHHHHhcccc
Q 014593 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSE 92 (422)
Q Consensus 17 ~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~----hP~~~ll~~~~~~~~~~ 92 (422)
+..+|.+++..|++|+..++++++|||||+||+|||+++.|+++|||||+||+++++++ ||.++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 45678899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (422)
Q Consensus 93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~ 172 (422)
+||||||+|+|+++||+++.+++++|+||..|++||++|++.+++.|+++++|++. .+.+.+++++|.+
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~------~~~l~~va~~s~~----- 153 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTS------NDEIAQVGTISAN----- 153 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHHHHhc-----
Confidence 99999999999999999999999999999999999999999999999999999863 2468999999855
Q ss_pred chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCc-cceeeEeeEEEeeccCCccc----cCCcceeeCceEEEEeeec
Q 014593 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (422)
Q Consensus 173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~-~ds~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~~L 247 (422)
+++.+++++++|+..++++ +.|.+.. ++.. .++++++|++|+++|.+|+| +.++..++||+|++++..+
T Consensus 154 -~d~~i~~lv~~Av~~vg~~---g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i 227 (546)
T PRK14104 154 -GDAEIGKFLADAMKKVGNE---GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKL 227 (546)
T ss_pred -CchHHHHHHHHHHHHhccC---CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhh
Confidence 4477999999999999864 3344432 3445 58999999999999999988 3457789999999998543
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHh------CCceeecCCC---
Q 014593 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFAD------RDIFCAGRVA--- 318 (422)
Q Consensus 248 ~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~------~~I~~v~~v~--- 318 (422)
+++++ +.++++.+.+.+++|||++++|++.++++|.. .+|+++++.+
T Consensus 228 -------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~ 283 (546)
T PRK14104 228 -------------SSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGD 283 (546)
T ss_pred -------------cCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCc
Confidence 34432 77889999999999999999999999999984 5788886665
Q ss_pred --HHHHHHHHHHhCCeEcee-----ccCCCCCCccccceEEEEEECCEEEEEEEcCCCC---------------------
Q 014593 319 --EEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (422)
Q Consensus 319 --~~~l~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~--------------------- 370 (422)
+++|+|||.+|||+++++ +++++++.||+|..+++ ++++++++.||.++
T Consensus 284 ~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (546)
T PRK14104 284 RRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDY 360 (546)
T ss_pred chHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 899999999999999999 88999889999999986 77899999998775
Q ss_pred --------------ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 371 --------------~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.
T Consensus 361 ~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~ 424 (546)
T PRK14104 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASE 424 (546)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHH
Confidence 899999999999999999999999999999999998 99999999999985
No 40
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1e-67 Score=546.46 Aligned_cols=362 Identities=23% Similarity=0.392 Sum_probs=321.0
Q ss_pred cccccH--HHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCch----hHHHHHHHHhcc
Q 014593 17 DTSQGK--AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQD 90 (422)
Q Consensus 17 ~~~~~~--~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~ 90 (422)
+..+|. ++|+..+.++..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 445666 79999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccc
Q 014593 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (422)
Q Consensus 91 ~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~ 170 (422)
+++||||||++||+++||+++.++++.|+||..|++||+.|.+.+++.|++++.|++ + +.|.++|++|++
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-----~~L~~vA~tS~~--- 207 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-----SELADVAAVSAG--- 207 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-----HHHHHHHHHhcc---
Confidence 999999999999999999999999999999999999999999999999999998885 2 459999999854
Q ss_pred ccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccce-eeEeeEEEeeccCCccc----cCCcceeeCceEEEEee
Q 014593 171 IGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNI 245 (422)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds-~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~ 245 (422)
+++.|+++++||+..++++ +.|. ..+|++.+|+ ++++|++|+++|.+||| ++|++.++||+|+++|+
T Consensus 208 ---~~~~i~~liaeAv~~Vg~~---g~i~--v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~ 279 (600)
T PLN03167 208 ---NNYEVGNMIAEAMSKVGRK---GVVT--LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDK 279 (600)
T ss_pred ---CcHHHHHHHHHHHHHhccC---CcEE--eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEcc
Confidence 5678999999999999864 2222 2368888887 89999999999999988 36889999999999998
Q ss_pred eccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHH------hCCceeecCCC-
Q 014593 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA------DRDIFCAGRVA- 318 (422)
Q Consensus 246 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~------~~~I~~v~~v~- 318 (422)
+| ++.++ +.++++++.+.+++||+++++|++.++++|. ..+|+++++.+
T Consensus 280 ~i-------------~~~~~-----------l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~ 335 (600)
T PLN03167 280 KI-------------TNARD-----------LIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGF 335 (600)
T ss_pred cc-------------CCHHH-----------HHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccC
Confidence 64 34554 4455567788899999999999999999998 67899998885
Q ss_pred ----HHHHHHHHHHhCCeEce-----eccCCCCCCccccceEEEEE-----ECC--------EEEEEEEcCC--------
Q 014593 319 ----EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQ-----VGN--------ERFNIFSGCP-------- 368 (422)
Q Consensus 319 ----~~~l~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~-----~g~--------~~~~~~~~~~-------- 368 (422)
+++|+|||.+|||++++ ++++++++.||+|+.|++.+ +|+ +++.+|+++.
T Consensus 336 g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~ 415 (600)
T PLN03167 336 GERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYE 415 (600)
T ss_pred CcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHH
Confidence 88999999999999999 68888888999999999987 765 3777777653
Q ss_pred ----C------CceEEEE-EecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 369 ----S------GRTATIV-LRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 369 ----~------~~~~Til-l~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
. +..+|++ |||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.
T Consensus 416 ~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~ 478 (600)
T PLN03167 416 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLAS 478 (600)
T ss_pred HHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHH
Confidence 1 1245555 999999999999999999999999999999 99999999999985
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-52 Score=378.57 Aligned_cols=279 Identities=32% Similarity=0.578 Sum_probs=257.4
Q ss_pred Cchhhhhcccc-ccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHH
Q 014593 5 MQPQIILLKEG-TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (422)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~ 83 (422)
.+|++.+..++ ..+..|.++.++|+.|..+++++++||+||+|++||++.+.|++.+|||| .|++++++.
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv 79 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIV 79 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHH
Confidence 33444444333 36789999999999999999999999999999999999999999999999 789999999
Q ss_pred HHHHhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHh
Q 014593 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (422)
Q Consensus 84 ~~~~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~ 163 (422)
..+..++.++|||||.+++|++.+++++.+++.+|+||..|.+||..+...+++.|++++.++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~----------------- 142 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPF----------------- 142 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcccc-----------------
Confidence 999999999999999999999999999999999999999999999999998877765543110
Q ss_pred HhhccccccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEE
Q 014593 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (422)
Q Consensus 164 tsl~sk~~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~ 243 (422)
+
T Consensus 143 ----------------------------------------e--------------------------------------- 143 (400)
T KOG0357|consen 143 ----------------------------------------E--------------------------------------- 143 (400)
T ss_pred ----------------------------------------c---------------------------------------
Confidence 0
Q ss_pred eeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHH
Q 014593 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (422)
Q Consensus 244 ~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~ 323 (422)
+...++++++.|+++++|||++||.+.|+|.+++..+++||.-.++|
T Consensus 144 ---------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiE 190 (400)
T KOG0357|consen 144 ---------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 190 (400)
T ss_pred ---------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceE
Confidence 34667888999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEceeccCCCCCCccccceEEEEEEC--CEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 014593 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVG--NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (422)
Q Consensus 324 ~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g--~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~ 401 (422)
.||.+||++|++++++|+++.||+|+.|.+..+| ++++..+++|++++.+||.+||.++.+++|.||++|||||++|+
T Consensus 191 liAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirn 270 (400)
T KOG0357|consen 191 LIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRN 270 (400)
T ss_pred EEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999999999999998 57999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEecCCHHHHhhhc
Q 014593 402 ATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 402 ~~~~~~vv~GGG~~E~~ls~ 421 (422)
+++|.++|+|||++|+.||-
T Consensus 271 lird~rivYgGGaaEiscsl 290 (400)
T KOG0357|consen 271 LIRDNRVVYGGGAAEISCAL 290 (400)
T ss_pred HhhcCeeEecCchHHhhhhh
Confidence 99999999999999999873
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-45 Score=352.89 Aligned_cols=359 Identities=24% Similarity=0.352 Sum_probs=310.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCch----hHHHHHHHHhccc
Q 014593 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDS 91 (422)
Q Consensus 16 ~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~~ 91 (422)
++..+|.++|...++++..||+++..|+||+||+++|.+..|.|.|||||.|+.+++.+.++. ++++++.+.+.++
T Consensus 17 k~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~ 96 (550)
T KOG0356|consen 17 KDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNE 96 (550)
T ss_pred cccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccC
Confidence 356789999999999999999999999999999999999999999999999999999999886 9999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhccccc
Q 014593 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (422)
Q Consensus 92 ~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~ 171 (422)
..||||||+++|++++..++.+-+.+|.+|..+.+|+..|.+...+.|.++++|+... +.+.++|.+|
T Consensus 97 ~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~------eeIaqVAtiS------ 164 (550)
T KOG0356|consen 97 EAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTP------EEIAQVATIS------ 164 (550)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCH------HHHHHHHhhh------
Confidence 9999999999999999999999999999999999999999999999999999999874 6899999988
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCccceeeeeec-CCCccc-eeeEeeEEEeeccCCccccC----CcceeeCceEEEEee
Q 014593 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVP-GGTMRD-SFLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLNI 245 (422)
Q Consensus 172 ~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~-g~~~~d-s~li~Givl~~~~~~~~~~~----~~~~~~n~kIll~~~ 245 (422)
++++..+.+++.+|+.+++++ +|+.+. |.+..| -++++|+-|+++|.+|||.+ +..+++||+++|.+.
T Consensus 165 AngD~~ig~li~~a~~kvG~~------GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~k 238 (550)
T KOG0356|consen 165 ANGDKEIGNLISDAMKKVGRK------GVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEK 238 (550)
T ss_pred cCCcHHHHHHHHHHHHHhCcC------CeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhh
Confidence 667889999999999999988 677764 556654 57999999999999999943 345789999999877
Q ss_pred eccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCC----c-------eee
Q 014593 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD----I-------FCA 314 (422)
Q Consensus 246 ~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~----I-------~~v 314 (422)
+++ ++.+ +.+.++.-.+...++++...+++..++..|--++ + ..|
T Consensus 239 ki~-------------~v~~-----------ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgf 294 (550)
T KOG0356|consen 239 KIS-------------SVQS-----------IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGF 294 (550)
T ss_pred hhh-------------HHHH-----------HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCC
Confidence 653 3333 5566666666677899999999998777665332 2 235
Q ss_pred cCCCHHHHHHHHHHhCCeEcee------ccCCCCCCccccceEEEEE---------------------------------
Q 014593 315 GRVAEEDLLRVAAATGGTVQTS------VNNVVDEVLGTCEHFEERQ--------------------------------- 355 (422)
Q Consensus 315 ~~v~~~~l~~ia~~tGa~ii~~------~~~l~~~~lG~~~~v~~~~--------------------------------- 355 (422)
++-++..+.+++.+||+.++.. +++...++||.|..+...+
T Consensus 295 Gdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~y 374 (550)
T KOG0356|consen 295 GDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374 (550)
T ss_pred cchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888899999999999999874 4566778899999887521
Q ss_pred ---ECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHHHhhhc
Q 014593 356 ---VGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYH 421 (422)
Q Consensus 356 ---~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~ 421 (422)
..++|...|+|+ .++|.++|.++.+++|.+.+++|||+++++++++| +|||||++.++|+.
T Consensus 375 e~ekl~er~a~ls~g----vavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~ 438 (550)
T KOG0356|consen 375 EKEKLNERLAKLSGG----VAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIP 438 (550)
T ss_pred hHhHHHHHHHHhcCC----eEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhh
Confidence 113455555554 89999999999999999999999999999999999 99999999999875
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.2e-42 Score=326.81 Aligned_cols=228 Identities=25% Similarity=0.392 Sum_probs=211.2
Q ss_pred cchhHHHHHHHHHHHHhcCCC-----C-Ccc-ceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEe
Q 014593 172 GGEKEFFASMVVDAVGAIGDG-----D-RLN-MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (422)
Q Consensus 172 ~~~~~~l~~lv~~ai~~v~~~-----~-~~~-~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (422)
+.|.+.|++++++|+..+.++ . |.+ +|+|++++||+++||++++|++|++++.++. ||+.++||||++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~---m~~~i~n~kIlll~ 93 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR---MPSKIKNPRILLLQ 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCcc---CCcccCCCcEEEEe
Confidence 568899999999999998643 1 443 6999999999999999999999999998864 79999999999999
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHH
Q 014593 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (422)
Q Consensus 245 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ 324 (422)
++|++++++. +++++++++++|++++++++++|++.|++||+++++|++.+++||.++||++++++++.+|+|
T Consensus 94 ~~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~r 166 (261)
T cd03334 94 GPLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLER 166 (261)
T ss_pred eeeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHH
Confidence 9999998763 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEcee-ccCCCCCCccccceEEEEEECC-----EEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHH
Q 014593 325 VAAATGGTVQTS-VNNVVDEVLGTCEHFEERQVGN-----ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (422)
Q Consensus 325 ia~~tGa~ii~~-~~~l~~~~lG~~~~v~~~~~g~-----~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~ 398 (422)
||++|||.++++ .++++++.+|+|++|+++++|+ ++|++|+||+.++++||+|||+++..++|++|+++||+++
T Consensus 167 Ia~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 167 ISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 4588999999999999999996 6999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEE
Q 014593 399 VRRATKNSTVV 409 (422)
Q Consensus 399 ~~~~~~~~~vv 409 (422)
++++..++.++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99998877543
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=4.1e-39 Score=294.97 Aligned_cols=205 Identities=43% Similarity=0.688 Sum_probs=195.6
Q ss_pred HHHHHHHhHhhccccccchhHHHHHHHHHHHHhcCCCC---CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCc
Q 014593 156 RLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP 232 (422)
Q Consensus 156 ~~l~~va~tsl~sk~~~~~~~~l~~lv~~ai~~v~~~~---~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~ 232 (422)
+.|.++|+|+++||+ +.|.+.+++++++|+..+++++ +.++|+|++++||+++||++++|++|++++.+|+ ||
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~---m~ 77 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPY---MP 77 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCC---CC
Confidence 468999999999999 9999999999999999998632 5789999999999999999999999999999987 48
Q ss_pred ceeeCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCce
Q 014593 233 KKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIF 312 (422)
Q Consensus 233 ~~~~n~kIll~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~ 312 (422)
+.++||||++++++|++ ||+++++|++.++++|.++||+
T Consensus 78 ~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~ 116 (209)
T cd03333 78 KRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIM 116 (209)
T ss_pred eEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCE
Confidence 99999999999999986 9999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHH
Q 014593 313 CAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSL 392 (422)
Q Consensus 313 ~v~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i 392 (422)
+++++++++|+|||++|||++++++++++++.+|+|+.|++.++|+++|++|++|+.+++|||+||||++.+++|.||++
T Consensus 117 ~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l 196 (209)
T cd03333 117 AVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSL 196 (209)
T ss_pred EEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 014593 393 HDAIMIVRRATKN 405 (422)
Q Consensus 393 ~dal~~~~~~~~~ 405 (422)
+||++++++++++
T Consensus 197 ~dal~~~~~~~~~ 209 (209)
T cd03333 197 HDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.93 E-value=6.5e-26 Score=241.71 Aligned_cols=232 Identities=22% Similarity=0.343 Sum_probs=208.8
Q ss_pred cchhHHHHHHHHHHHHhcCCCC-------CccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEe
Q 014593 172 GGEKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (422)
Q Consensus 172 ~~~~~~l~~lv~~ai~~v~~~~-------~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (422)
..|.+.++.|+++|...+.++. ..++|+|++|+||...||+++.|+++.+..++. +|..++++|||+++.
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k---~M~~~~e~prilll~ 407 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHK---RMATKYENPRILLLG 407 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhh---hhhhhccCCceEEEe
Confidence 3688999999999999988642 369999999999999999999999999999885 478999999999999
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHH
Q 014593 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (422)
Q Consensus 245 ~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ 324 (422)
++|+|++-.. ....++.++.+|.++++.++.+|...+++++++.++|+..|+++|...+|.++-+++...|+|
T Consensus 408 g~leyqrisn-------~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leR 480 (1598)
T KOG0230|consen 408 GPLEYQRISN-------QLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLER 480 (1598)
T ss_pred cchhhhhhhc-------cccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHH
Confidence 9999987542 245667777789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEceeccCCCCCCccccceEEEEEEC-----CEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 014593 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVG-----NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (422)
Q Consensus 325 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g-----~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~ 399 (422)
|+++|||.|+++++.++...+|+|+.|++.++. .+.+++|+||+.+.+|||+|||....++.++|+.++-++.+.
T Consensus 481 IsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aa 560 (1598)
T KOG0230|consen 481 ISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAA 560 (1598)
T ss_pred HHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987665 457999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEecCC
Q 014593 400 RRATKNSTVVAGGG 413 (422)
Q Consensus 400 ~~~~~~~~vv~GGG 413 (422)
+++.-+..++.--|
T Consensus 561 y~l~LE~SflaDe~ 574 (1598)
T KOG0230|consen 561 YHLALETSFLADEG 574 (1598)
T ss_pred HHHHHhhhhhhccC
Confidence 99866554554433
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=64.93 E-value=23 Score=29.19 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHh
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~t 329 (422)
...+.+++.|+++|++. .+++-+..+|..+||-+..-.+.+.=+.|-...
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~ 105 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFL 105 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHh
Confidence 35677889999999997 789999999999999988666533333333333
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=57.18 E-value=22 Score=27.76 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCC
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~ 318 (422)
...+.+...++++|++. ++++.+...|..+||.++....
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 34555666899999996 7999999999999999987665
No 48
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=56.82 E-value=35 Score=26.03 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCC
Q 014593 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317 (422)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v 317 (422)
..+.+...++++|++. ++++.+...|.++||.++...
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~ 81 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGA 81 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEEST
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcC
Confidence 3444556899999886 689999999999999999863
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=50.20 E-value=45 Score=25.79 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.2
Q ss_pred HHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCC
Q 014593 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (422)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~ 318 (422)
..+.+...++++|++. ++++.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 3444567899999997 6999999999999999986655
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=50.16 E-value=72 Score=24.46 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCeEEEecCCccHHHH----HHHHhCCceeecCCCHHHHHHHH
Q 014593 277 IYDKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVA 326 (422)
Q Consensus 277 l~~~v~~i~~~~~~lvi~~~~i~~~~~----~~l~~~~I~~v~~v~~~~l~~ia 326 (422)
+++.++.+.+-.+.+|+..+++++... .+|.++||..+.--++.+|.+.+
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 456667777777889999999998543 45778999998877777777644
No 51
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=42.42 E-value=1.1e+02 Score=23.33 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCeEEEecCCccHHH----HHHHHhCCceeecCCCHHHHHHHHHHhCCe
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLA----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~----~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ 332 (422)
..++.|.+-.+.+||...+.++.. .+++..++|.+...-.+.+ |..++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~e---LG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKE---LGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHH---HHHHHCCc
Confidence 445666667789999999998754 3456789999876555554 55566654
No 52
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=42.13 E-value=1e+02 Score=23.30 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCeEEEecCCccHHH----HHHHHhCCceeecCCCHHHHHHHHHHhCCeE
Q 014593 278 YDKLDKCVQSGAKVVLSRLAIGDLA----TQYFADRDIFCAGRVAEEDLLRVAAATGGTV 333 (422)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~~----~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~i 333 (422)
+...+.|.+-.+.+|+...+.++.. .+++..++|.++.--++.+ |..++|-.+
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~e---LG~a~G~~~ 73 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKK---LGKACGIEV 73 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHHCCCc
Confidence 3455666677788999999998754 3456789998876555544 455666543
No 53
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=40.67 E-value=76 Score=27.65 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=35.2
Q ss_pred HHHHHhcCCeEEEecCCccHHHHHHHHhCCceee--cCCC-----HHHHHHHHHHhCCe
Q 014593 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA--GRVA-----EEDLLRVAAATGGT 332 (422)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v--~~v~-----~~~l~~ia~~tGa~ 332 (422)
++.|.+.+|+||+......+...+.|.+.||.++ .... .+.++.++.++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 4667888999999865555546678899999543 2221 23477788888764
No 54
>PRK06683 hypothetical protein; Provisional
Probab=39.95 E-value=1.1e+02 Score=23.13 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCeEEEecCCccHHHH----HHHHhCCceeecCCCHHHHHHHHHHhCCeE
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGGTV 333 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~----~~l~~~~I~~v~~v~~~~l~~ia~~tGa~i 333 (422)
..++.|.+-.+.+|+...+.++... +++..++|.++..-... .|..++|-++
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~---eLG~A~G~~~ 73 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVR---KLGKVAGIQV 73 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHH---HHHHHhCCcc
Confidence 4456666677899999999988543 45678999887655554 4556777654
No 55
>PRK07283 hypothetical protein; Provisional
Probab=39.48 E-value=1.1e+02 Score=24.01 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCeEEEecCCccHHHH----HHHHhCCceeecCCCHHHHHHHHHHhCC
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGG 331 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~----~~l~~~~I~~v~~v~~~~l~~ia~~tGa 331 (422)
...+.+.+-.+.+|+.+.+.++... +.+..++|.++.....++ |..++|-
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~e---LG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLE---LSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 3445566667889999999988655 566678999887665554 5567774
No 56
>PRK07714 hypothetical protein; Provisional
Probab=37.90 E-value=1.3e+02 Score=23.59 Aligned_cols=51 Identities=18% Similarity=0.012 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCeEEEecCCccHHH----HHHHHhCCceeecCCCHHHHHHHHHHhCCe
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLA----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~----~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ 332 (422)
...+.+.+-.+.+||...+.++.. .+++..++|.++...++++|. .++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eLG---~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLG---HAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHHH---HHhCCC
Confidence 344556666788999998988743 344567899988776665554 566654
No 57
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.51 E-value=98 Score=28.23 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=35.9
Q ss_pred HHHHHHhcCCeEEEecCCccH-HHHHHHHhCCceeecC--CC----HHHHHHHHHHhCCe
Q 014593 280 KLDKCVQSGAKVVLSRLAIGD-LATQYFADRDIFCAGR--VA----EEDLLRVAAATGGT 332 (422)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~-~~~~~l~~~~I~~v~~--v~----~~~l~~ia~~tGa~ 332 (422)
-+++|.+.+|+|||.....++ ...+.|.+.||.++-. -. .+.++.|+.++|..
T Consensus 49 n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 49 DLERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred CHHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 346778889999988655444 3477788888865421 12 34477888888875
No 58
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=35.04 E-value=84 Score=31.04 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=36.9
Q ss_pred HHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCC---CH----HHHHHHHHHhCCe
Q 014593 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV---AE----EDLLRVAAATGGT 332 (422)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v---~~----~~l~~ia~~tGa~ 332 (422)
-+++|+..+++|||......+...+.|.+.||.++..- .. +.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 45778899999999865544556778889999875321 11 3456777777764
No 59
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=34.83 E-value=1.5e+02 Score=23.23 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCeEEEecCCccHH----HHHHHHhCCceeecCC-CHHHHHHHHHHhCCe
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDL----ATQYFADRDIFCAGRV-AEEDLLRVAAATGGT 332 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~----~~~~l~~~~I~~v~~v-~~~~l~~ia~~tGa~ 332 (422)
...+.+.+..+.+|+.+.+.++. ..+++..++|.++... .+++| ..++|-.
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eL---G~a~Gk~ 78 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVEL---GTLCGKP 78 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHH---HHHhCCC
Confidence 44566666778899998888864 3456678999987753 55554 4577743
No 60
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=33.37 E-value=1.2e+02 Score=23.78 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCC
Q 014593 277 IYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (422)
Q Consensus 277 l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~ 318 (422)
+...++.+ .++++|++. ++++.+...|.++||.++.--.
T Consensus 56 ~~~~l~~l--~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 56 LDAIIKLL--SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred HHHHHHHH--cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 33344433 589999886 8899999999999999985443
No 61
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=32.43 E-value=1.5e+02 Score=24.10 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCeEEEecCCccHH-----HHHHHHhCCceeecCCCHHHHHH
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDL-----ATQYFADRDIFCAGRVAEEDLLR 324 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~-----~~~~l~~~~I~~v~~v~~~~l~~ 324 (422)
...+.|.+..+.+|+.+.++++. ..+++.+.+|..+..-++++|.+
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~ 83 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGA 83 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHH
Confidence 44455556667888888888753 23456788888777666665554
No 62
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=31.72 E-value=52 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHH
Q 014593 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (422)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~ 321 (422)
.+++.|..+.|+++|++...-...+.++-.+.||..++.++...
T Consensus 182 ~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~r 225 (237)
T TIGR00129 182 SEMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNGR 225 (237)
T ss_pred HHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCCc
Confidence 35678888999999999888889999999999999888766543
No 63
>PF12846 AAA_10: AAA-like domain
Probab=31.56 E-value=1.4e+02 Score=27.78 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCeEEEecCCccHHH-----HHHHHhCCceeecCCCHHHHHHHHHHhCCe
Q 014593 276 IIYDKLDKCVQSGAKVVLSRLAIGDLA-----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (422)
Q Consensus 276 ~l~~~v~~i~~~~~~lvi~~~~i~~~~-----~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ 332 (422)
.+.++++..-+.|+.+++....+++.. ..++...+...+.++...+.+.+++..|.+
T Consensus 241 ~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 241 FLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 467788888889999999999999887 789999999999999999988899888754
No 64
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=31.14 E-value=1.4e+02 Score=29.11 Aligned_cols=56 Identities=14% Similarity=0.000 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHhCCeEc
Q 014593 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (422)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ii 334 (422)
.++++.+.+.++++|+...+.... ...|.+.||.++..+..-..-+-+...|+..+
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 456677788899999888776554 58889999999887777666666777787655
No 65
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=30.45 E-value=95 Score=29.40 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHHHhcCCeEEEecCCccHHHHHHHHhCCceeec--CCC----HHHHHHHHHHhCCe
Q 014593 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG--RVA----EEDLLRVAAATGGT 332 (422)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~--~v~----~~~l~~ia~~tGa~ 332 (422)
++.|...+|+|||.....++...+.|.+.||.++- ... .+.++.++.++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 46678889999998877777677888888886642 111 23477788888765
No 66
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=30.16 E-value=1.8e+02 Score=23.95 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCeEEEecCCccHH-H----HHHHHhCCceeecCCCHHHHHH
Q 014593 278 YDKLDKCVQSGAKVVLSRLAIGDL-A----TQYFADRDIFCAGRVAEEDLLR 324 (422)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~-~----~~~l~~~~I~~v~~v~~~~l~~ 324 (422)
...++.+.+-.+.+||.+.++++. . ..++.+++|..+..-.+++|.+
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~ 87 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGK 87 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 344555556667888888888763 2 2345678888766665554443
No 67
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=29.93 E-value=1.7e+02 Score=28.28 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHhCCeEc
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ii 334 (422)
+.++.+.+.++++|.+..+..+.....+.+.|+.++..+...+.-+-+.-.|+..+
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 45566667788877776665555667777778777666555555455555566655
No 68
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=29.63 E-value=80 Score=29.81 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHH
Q 014593 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (422)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~ 320 (422)
.+++.|..+.|+++|++...-...+.++-.+.||..++.++..
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 3667888899999999988888999999999999988776554
No 69
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=29.61 E-value=1.9e+02 Score=23.24 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCeEEEecCCccHH----HHHHHHhCCceeecC-CCHHHHHHHHHHhCCe
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDL----ATQYFADRDIFCAGR-VAEEDLLRVAAATGGT 332 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~----~~~~l~~~~I~~v~~-v~~~~l~~ia~~tGa~ 332 (422)
..++.|.+-.+.+||.+.+.++. ..+++...+|.++.. -...+ |..++|-+
T Consensus 32 ~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~e---LG~A~Gk~ 87 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNND---LGTACGRH 87 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHH---HHHHhCCc
Confidence 44566666778899999999875 355677889998754 55544 55577744
No 70
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=28.88 E-value=1.3e+02 Score=26.80 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCC----ceeecCCC
Q 014593 275 NIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD----IFCAGRVA 318 (422)
Q Consensus 275 ~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~----I~~v~~v~ 318 (422)
..+++.++.+...++++++++.|.++..--+|.+-. |-++.-++
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 368899999999999999999999988777666433 65555443
No 71
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=28.30 E-value=2.1e+02 Score=23.42 Aligned_cols=49 Identities=8% Similarity=0.046 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCeEEEecCCccHH-----HHHHHHhCCceeecCCCHHHHHHH
Q 014593 277 IYDKLDKCVQSGAKVVLSRLAIGDL-----ATQYFADRDIFCAGRVAEEDLLRV 325 (422)
Q Consensus 277 l~~~v~~i~~~~~~lvi~~~~i~~~-----~~~~l~~~~I~~v~~v~~~~l~~i 325 (422)
+...++.|.+-.+.+|+.+.+++|. ...+|++++|..+.--++.+|.+.
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a 85 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKA 85 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHH
Confidence 4555666666678899999999952 234567899999888888877764
No 72
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=28.27 E-value=1.4e+02 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.3
Q ss_pred cCCeEEEecCCccHHHHHHHHhCCceeecCCC
Q 014593 287 SGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (422)
Q Consensus 287 ~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~ 318 (422)
.++++||+. ++++.+...|.++||.++.-..
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 588898886 8899999999999999986544
No 73
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=27.84 E-value=2e+02 Score=23.25 Aligned_cols=50 Identities=20% Similarity=0.148 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCC----HHHHHHHHHHh
Q 014593 277 IYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA----EEDLLRVAAAT 329 (422)
Q Consensus 277 l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~----~~~l~~ia~~t 329 (422)
+...++.+ .++++|||. +|++.+...|.+.||.++.--. .+-|+.+.+..
T Consensus 54 ~~~~~~~l--~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~ 107 (119)
T TIGR02663 54 IAPKIEAL--KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKML 107 (119)
T ss_pred HHHHHHHh--CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHH
Confidence 34444444 588999886 8899999999999999985222 44577776665
No 74
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=26.68 E-value=1e+02 Score=29.22 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHH
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l 322 (422)
+.++|.++.|++++++--.-..++.+...+.||+.++.++...+
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~f 255 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGRF 255 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCcc
Confidence 56788889999999998888899999999999999987765543
No 75
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=26.38 E-value=1.2e+02 Score=23.30 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCeEEEecCCccHH-----HHHHHHhCCceeecCCCHHHHHHHHHHhCCe
Q 014593 278 YDKLDKCVQSGAKVVLSRLAIGDL-----ATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (422)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~-----~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ 332 (422)
.+..+.+.+..+.+|+.+.++++. ...++.+++|.++..-++.+| .+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eL---G~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEEL---GRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHH---HHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHH---HHHHCCC
Confidence 455566666678899988888762 334677999999876655554 4555554
No 76
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=26.06 E-value=2.5e+02 Score=22.35 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCeEEEecCCccHHH----HHHHHhCCceeecCCCHHHHHHHHHHhCCe
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLA----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~----~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ 332 (422)
...+.|.+-++.+||...+.++.. .+++...+|.++.....++ |..++|-.
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~ 78 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRD 78 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCC
Confidence 344555666788999998888743 3445567898887766655 45577754
No 77
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.43 E-value=1.5e+02 Score=27.02 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=30.0
Q ss_pred HHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecC----CCHHHHHHHHHHhCCe
Q 014593 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGR----VAEEDLLRVAAATGGT 332 (422)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~----v~~~~l~~ia~~tGa~ 332 (422)
+++|..++++||++.....+ ..+.|.+.+..++-. --.+.++.++.++|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 35567778888887655544 556666665433211 1235577777777664
No 78
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=24.13 E-value=85 Score=29.25 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.7
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 014593 373 ATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (422)
Q Consensus 373 ~Till~g~~~~~l~e~~~~i~dal~~~~~ 401 (422)
.||+|+| ++..+++.++.++|-+++++-
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhee
Confidence 5999998 788999999999999988754
No 79
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.01 E-value=96 Score=26.98 Aligned_cols=51 Identities=14% Similarity=-0.006 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeEEEecCCccHH-HHHHHHhCCceee--cC---CC--HHHHHHHHHHhC
Q 014593 280 KLDKCVQSGAKVVLSRLAIGDL-ATQYFADRDIFCA--GR---VA--EEDLLRVAAATG 330 (422)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~-~~~~l~~~~I~~v--~~---v~--~~~l~~ia~~tG 330 (422)
-++.+...+|+|||......+. ....|.+.||.++ .. .. .+.++.+..++|
T Consensus 61 n~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 61 NVELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred CHHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 3577889999999986555443 7788899998553 21 11 233666666766
No 80
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=23.84 E-value=28 Score=33.01 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCCHHH
Q 014593 357 GNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAID 416 (422)
Q Consensus 357 g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E 416 (422)
|+..++.+....+..+|.|+-+..--.--.-.|+++ |++++|-+.+.|.++|||-.+|
T Consensus 48 GnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRv--Al~iir~Aee~GkL~~gg~v~E 105 (391)
T KOG1481|consen 48 GNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRV--ALYIIRTAEEKGKLVRGGTVVE 105 (391)
T ss_pred CCCceEEeeccccccccchhhhhhccCCCCChhhhh--HHHHHHHHHHcCCcccCceEEe
Confidence 455555554433333454443221111111234443 8999999999999999974433
No 81
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=22.65 E-value=2.7e+02 Score=20.89 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhccc
Q 014593 45 PRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDS 91 (422)
Q Consensus 45 P~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~ 91 (422)
+-+...++.++.|-+.+..-|+.|.+.++=.+-+..++..++...+.
T Consensus 13 ~v~~~~Vl~~p~~~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~Y~~ 59 (81)
T TIGR03859 13 RAQDCYVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPA 59 (81)
T ss_pred cccCcEEEEcCCceeeeChHHHHHHHHccCCCcHHHHHHHHHHHcCC
Confidence 44556778887777889999999999999988888888777766554
No 82
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.94 E-value=5.9e+02 Score=23.09 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceee-cCCCHHHHHHHHHHhCCeEcee
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA-GRVAEEDLLRVAAATGGTVQTS 336 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v-~~v~~~~l~~ia~~tGa~ii~~ 336 (422)
+.+++.++.|.+.++ ..++++...+++.++||..+ +-...+++.+ +...|+.++.=
T Consensus 79 ~~~~~a~~aGA~Fiv-sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~-A~~~Gad~vkl 135 (213)
T PRK06552 79 VTARLAILAGAQFIV-SPSFNRETAKICNLYQIPYLPGCMTVTEIVT-ALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHHcCCCEEE-CCCCCHHHHHHHHHcCCCEECCcCCHHHHHH-HHHcCCCEEEE
Confidence 445667888998776 57999999999999999987 5666677664 45689988863
No 83
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.63 E-value=2.2e+02 Score=22.90 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCeEEEec-CCccHHHHHHHHhCCceeecC
Q 014593 277 IYDKLDKCVQSGAKVVLSR-LAIGDLATQYFADRDIFCAGR 316 (422)
Q Consensus 277 l~~~v~~i~~~~~~lvi~~-~~i~~~~~~~l~~~~I~~v~~ 316 (422)
..+.++.+.+.|++-++.+ +..++.+.+++.++|+.+++.
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 5677788888888755554 555567888888888887754
No 84
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=20.78 E-value=2.3e+02 Score=27.60 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCeEEEecCCcc-HHHHHHHHhCCceeecCCCHHHHHHHHHHhCCeEc
Q 014593 277 IYDKLDKCVQSGAKVVLSRLAIG-DLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (422)
Q Consensus 277 l~~~v~~i~~~~~~lvi~~~~i~-~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ii 334 (422)
+...++.+.+.++++|.+..+.. +...+.+.+.||.++..+..-..-+.+...|+.++
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 56677788888999999887777 67788899999999877766665556666675444
No 85
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=20.41 E-value=1.2e+02 Score=19.92 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=20.1
Q ss_pred HHHHHhHHhcCCChHHHHHHHHHHHHHHHHHH
Q 014593 108 LREAKPFIEDGVHPQNLIRSFRNASYKAIQKV 139 (422)
Q Consensus 108 l~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l 139 (422)
.+++.+|.+.|.+...|.+-+..+..-+..+|
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l 42 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTVYRYL 42 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46777888889888888777666555554444
No 86
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=20.40 E-value=94 Score=28.75 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCH
Q 014593 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (422)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~ 319 (422)
+++.|..+.|+++|++...-...+.++-.+.||+.++.++.
T Consensus 183 emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 183 EMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 55666777788888777777777777777778777765543
Done!