Query 014596
Match_columns 422
No_of_seqs 108 out of 120
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zoq_C CREB-binding protein, i 60.7 4.1 0.00014 29.1 1.9 30 261-291 4-33 (47)
2 2zc2_A DNAD-like replication p 37.7 1.2E+02 0.0041 22.8 7.2 70 326-404 7-76 (78)
3 1vqr_A Hypothetical protein CJ 30.0 78 0.0027 29.8 6.1 59 257-323 15-75 (297)
4 2of5_A Death domain-containing 29.5 53 0.0018 27.4 4.2 78 268-345 18-104 (114)
5 3q5w_A Protein CUT8; proteasom 28.9 82 0.0028 30.0 5.8 31 303-334 73-103 (245)
6 1uw4_B UPF2, regulator of nons 28.1 1.1E+02 0.0037 29.0 6.6 67 325-396 4-70 (248)
7 2o71_A Death domain-containing 27.8 79 0.0027 26.3 5.0 76 268-343 18-102 (115)
8 2ion_A PDCD4, programmed cell 27.6 52 0.0018 28.6 4.0 44 357-404 39-82 (152)
9 2nsz_A Programmed cell death p 25.8 40 0.0014 28.4 2.8 44 357-404 37-80 (129)
10 1kbh_B CREB-binding protein, n 25.5 19 0.00066 26.9 0.6 32 259-291 9-40 (59)
11 4fu3_A Regulation of nuclear P 25.1 87 0.003 26.0 4.8 80 3-87 5-84 (135)
12 3m1t_A Putative phosphohydrola 23.4 36 0.0012 32.0 2.3 56 260-323 4-59 (275)
13 3hc1_A Uncharacterized HDOD do 20.7 41 0.0014 32.0 2.1 60 256-323 12-71 (305)
14 3hjl_A Flagellar motor switch 20.4 1.3E+02 0.0046 29.5 5.8 124 258-392 79-209 (329)
No 1
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=60.71 E-value=4.1 Score=29.14 Aligned_cols=30 Identities=40% Similarity=0.687 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhcCcccc
Q 014596 261 RDLIAKALKGPLLPAQYEQVVVELANDPKLV 291 (422)
Q Consensus 261 r~L~~kA~~~~Lt~~eqq~Ll~~L~~D~~lv 291 (422)
..|| +..++|=|++|||+++..|+++|.|.
T Consensus 4 qqLl-~tlksp~sp~qqqqvl~ILksnPqLM 33 (47)
T 1zoq_C 4 QDLL-RTLKSPSSPQQQQQVLNILKSNPQLM 33 (47)
T ss_dssp HHHH-HTCCSCCCHHHHHHHHHHHHTCHHHH
T ss_pred HHHH-HHhcCCCCHHHHHHHHHHHHcCHHHH
Confidence 3444 55788889999999998887777544
No 2
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=37.74 E-value=1.2e+02 Score=22.84 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=57.7
Q ss_pred hHHHHHHhhCCCChhHHHHHHHHHhccCCcHHHHHHHHHhhhhhccccchhhhccccchhhHHHHHHHHHhcccccccc
Q 014596 326 SEYYTVLVNMDMSLHSMEVVNRLTTAVELPKEFVRMYITNCISSCQNIKDKYMQNRLVRLVCVFLQSLIRNRIIDGENV 404 (422)
Q Consensus 326 ~~yld~Lv~m~~Sl~smEvVnrL~t~~~lP~eFi~~YI~ncI~~Ce~ikDk~~q~R~VRLVCvFlqsLIrnkii~v~dl 404 (422)
-+++.....-++|..-+|.++.+.....+|.+.|..=|..|+. + +.+-.|+|-..+..--++||-+++|+
T Consensus 7 ~~~~e~~~gr~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~---~------~~~s~~Yi~~Il~~W~~~gi~T~e~a 76 (78)
T 2zc2_A 7 VEDFERELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVF---N------GKTNWNYIQAILRNWRHEGISTLRQV 76 (78)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---H------TCCCHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---c------CCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 3455556667899999999999999999999999998888862 1 24678999999999999999988764
No 3
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=30.00 E-value=78 Score=29.78 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCcccccccCCCCC--ChHHHHHhCHHHHHHHHHHhcCCC
Q 014596 257 GAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPR--KLPELVENNPLIAVDVLTKLINSP 323 (422)
Q Consensus 257 ~~~~r~L~~kA~~~~Lt~~eqq~Ll~~L~~D~~lv~~~glt~~--~Lp~LVEnNP~IA~e~L~kL~~s~ 323 (422)
|...+.++.+.-+=|-.+.-..+|++.+..+. .+.. ++.++|+..|.++..+| |+.||+
T Consensus 15 ~~~~~~~~~~~~~lp~~~~~~~~l~~~~~~~~-------~~~~~~~l~~~i~~Dp~Ls~~lL-r~aNS~ 75 (297)
T 1vqr_A 15 GDMNELLLKSVEVLPPLPDTVSKLRKYVSEAN-------SNIETMKVAEIISSDPLMTAKLL-QLANSP 75 (297)
T ss_dssp THHHHHHHHHTSSCCCCHHHHHHHHHHHHHC---------CCCHHHHHHHHHTCHHHHHHHH-HHHTSG
T ss_pred cchHHHHHhccccCCCCHHHHHHHHHHHcCCC-------CCCCHHHHHHHHHHCHHHHHHHH-HHHccc
Confidence 45788889888888888888888888876543 4566 89999999999999998 889987
No 4
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=29.54 E-value=53 Score=27.37 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=57.4
Q ss_pred HcCCCCHHHHHHHHHHHhcCc-ccccccCCCCCChHHHHHhCH----HHHHHHHHHhcC----CCChhHHHHHHhhCCCC
Q 014596 268 LKGPLLPAQYEQVVVELANDP-KLVYHCGLTPRKLPELVENNP----LIAVDVLTKLIN----SPEISEYYTVLVNMDMS 338 (422)
Q Consensus 268 ~~~~Lt~~eqq~Ll~~L~~D~-~lv~~~glt~~~Lp~LVEnNP----~IA~e~L~kL~~----s~~~~~yld~Lv~m~~S 338 (422)
+.+.+++.+...+-+.+-.+. .+.+..|++..++..+-++|| .=+.++|.+-.. ..-......+|..+.+.
T Consensus 18 ~~~~~t~~~l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (114)
T 2of5_A 18 LNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (114)
T ss_dssp TTSCCCHHHHHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred hcCCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 346778888888988888887 588899999999999999998 344555543221 22466778888888887
Q ss_pred hhHHHHH
Q 014596 339 LHSMEVV 345 (422)
Q Consensus 339 l~smEvV 345 (422)
...+.-+
T Consensus 98 ~~v~~~~ 104 (114)
T 2of5_A 98 PSLLLHM 104 (114)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 5
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=28.85 E-value=82 Score=29.98 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.0
Q ss_pred HHHHhCHHHHHHHHHHhcCCCChhHHHHHHhh
Q 014596 303 ELVENNPLIAVDVLTKLINSPEISEYYTVLVN 334 (422)
Q Consensus 303 ~LVEnNP~IA~e~L~kL~~s~~~~~yld~Lv~ 334 (422)
+||+.+|.|+.++. .++..+.+..++++|.+
T Consensus 73 ~L~~~HPel~qeI~-~~~P~Psl~~al~~L~~ 103 (245)
T 3q5w_A 73 QCVEKHPDLARDIR-GILPAPSMDTCVETLRK 103 (245)
T ss_dssp HHHHHCTHHHHHHH-TTSCCCCHHHHHHHHHH
T ss_pred HHHHhCchHHHHHh-hcCCCCCHHHHHHHHHH
Confidence 67899999999997 66788878877777653
No 6
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=28.11 E-value=1.1e+02 Score=29.04 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=57.1
Q ss_pred hhHHHHHHhhCCCChhHHHHHHHHHhccCCcHHHHHHHHHhhhhhccccchhhhccccchhhHHHHHHHHHh
Q 014596 325 ISEYYTVLVNMDMSLHSMEVVNRLTTAVELPKEFVRMYITNCISSCQNIKDKYMQNRLVRLVCVFLQSLIRN 396 (422)
Q Consensus 325 ~~~yld~Lv~m~~Sl~smEvVnrL~t~~~lP~eFi~~YI~ncI~~Ce~ikDk~~q~R~VRLVCvFlqsLIrn 396 (422)
.++|+..|+..+++-.+.+.|.++....+-...-+..|+-+|...-..+| | ..+++++.++..|-+-
T Consensus 4 ~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~k--y---~nI~~lA~ll~~L~~~ 70 (248)
T 1uw4_B 4 LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVK--Y---NSIHCVANLLAGLVLY 70 (248)
T ss_dssp HHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSC--G---GGHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcc--c---chHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999877788899999998866654 4 3488888888888763
No 7
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=27.76 E-value=79 Score=26.33 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=56.3
Q ss_pred HcCCCCHHHHHHHHHHHhcCc-ccccccCCCCCChHHHHHhCH----HHHHHHHHHhcC----CCChhHHHHHHhhCCCC
Q 014596 268 LKGPLLPAQYEQVVVELANDP-KLVYHCGLTPRKLPELVENNP----LIAVDVLTKLIN----SPEISEYYTVLVNMDMS 338 (422)
Q Consensus 268 ~~~~Lt~~eqq~Ll~~L~~D~-~lv~~~glt~~~Lp~LVEnNP----~IA~e~L~kL~~----s~~~~~yld~Lv~m~~S 338 (422)
+.+.+++.+...|-+.+-.+. .+.+..|++..++..+-.+|| .=+.++|.+-.. ..-......+|..+...
T Consensus 18 ~~~~~t~~~l~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (115)
T 2o71_A 18 LNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (115)
T ss_dssp GGSCCCHHHHHHHHHHCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred ccCCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 456788889999999998887 588999999999999999998 344455543221 22456778888888877
Q ss_pred hhHHH
Q 014596 339 LHSME 343 (422)
Q Consensus 339 l~smE 343 (422)
...+.
T Consensus 98 ~~v~~ 102 (115)
T 2o71_A 98 PSLLL 102 (115)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 76543
No 8
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.55 E-value=52 Score=28.63 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhhccccchhhhccccchhhHHHHHHHHHhcccccccc
Q 014596 357 EFVRMYITNCISSCQNIKDKYMQNRLVRLVCVFLQSLIRNRIIDGENV 404 (422)
Q Consensus 357 eFi~~YI~ncI~~Ce~ikDk~~q~R~VRLVCvFlqsLIrnkii~v~dl 404 (422)
.|.|.+|..+|...=+-+. .+-..++|.+|++|.+.|+|+..++
T Consensus 39 ~f~~e~V~~~i~~alE~~~----~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 39 HFHHELVYEAIVMVLESTG----ESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp GGHHHHHHHHHHHHHHCCS----SHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred cchHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 5555555555554322221 2445899999999999999998654
No 9
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.81 E-value=40 Score=28.40 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhhccccchhhhccccchhhHHHHHHHHHhcccccccc
Q 014596 357 EFVRMYITNCISSCQNIKDKYMQNRLVRLVCVFLQSLIRNRIIDGENV 404 (422)
Q Consensus 357 eFi~~YI~ncI~~Ce~ikDk~~q~R~VRLVCvFlqsLIrnkii~v~dl 404 (422)
.|.|.++..+|...=+-++ .+-.+++|.++++|.+.|+|+..++
T Consensus 37 ~f~~e~V~~~i~~alE~~~----~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 37 HFHHELVYEAIVMVLESTG----ESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp GGHHHHHHHHHHHHHHCCS----SHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4555555555544322221 1345899999999999999998654
No 10
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=25.54 E-value=19 Score=26.87 Aligned_cols=32 Identities=41% Similarity=0.688 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcCcccc
Q 014596 259 AVRDLIAKALKGPLLPAQYEQVVVELANDPKLV 291 (422)
Q Consensus 259 ~~r~L~~kA~~~~Lt~~eqq~Ll~~L~~D~~lv 291 (422)
+...|| +.++++=++++|++++..|+++|.|.
T Consensus 9 aLqqLl-~tlksp~speqqqqvl~ILksNPqLM 40 (59)
T 1kbh_B 9 ALQDLL-RTLKSPSSPQQQQQVLNILKSNPQLM 40 (59)
T ss_dssp HHHHHH-HHHHSCTTTTCSTHHHHHHTTSHHHH
T ss_pred HHHHHH-HHhcCCCCHHHHHHHHHHHHhCHHHH
Confidence 345555 55788889999999998887777544
No 11
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=25.14 E-value=87 Score=25.96 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=49.2
Q ss_pred ChHHHHHHHHhhccCCCcHHHHHHHHHhhCCCCCchhhhhHHHHHhcCCccCCchhHHHHHHHHHhhhcCCCCCCCChHH
Q 014596 3 SQEESGRVFEMLKSQEKPVEEIVSDLISTFPRHRHFVLCTTLSLLLQDKKALNSTERLVAFAILHHSYCSQKPSANPFIS 82 (422)
Q Consensus 3 ~~~e~~~Ll~llse~~~tLEsi~~~f~~~F~~~~~f~v~~~L~~LL~d~~ll~~~qRlia~~iLy~~y~~e~~~~NPF~~ 82 (422)
+.+.+...|+-|+...++-.++..-....-... =.+..++.--++.. .+.+||..+|++-+.-.+.....++|..
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a--~~iv~~i~~~l~~~---~~~~KL~~LYLindIl~ns~~~~~~y~~ 79 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIHHRKHA--GPIVSVWHRELRKA---KSNRKLTFLYLANDVIQNSKRKGPEFTR 79 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGH--HHHHHHHHHHHHHS---CTTTHHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 567788888888877777777776666532211 12233333333333 5679999999988775544333466766
Q ss_pred HHHhh
Q 014596 83 LIINS 87 (422)
Q Consensus 83 v~i~~ 87 (422)
.|-..
T Consensus 80 ~f~~~ 84 (135)
T 4fu3_A 80 EFESV 84 (135)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 65433
No 12
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=23.36 E-value=36 Score=31.96 Aligned_cols=56 Identities=25% Similarity=0.400 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCcccccccCCCCCChHHHHHhCHHHHHHHHHHhcCCC
Q 014596 260 VRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVLTKLINSP 323 (422)
Q Consensus 260 ~r~L~~kA~~~~Lt~~eqq~Ll~~L~~D~~lv~~~glt~~~Lp~LVEnNP~IA~e~L~kL~~s~ 323 (422)
.++|+.+.-+=|--+.-..+|++.+.++. .+..++.++|+..|.++..+| |+.||+
T Consensus 4 ~~~l~~~~~~lP~lp~~~~~l~~~~~~~~-------~~~~~la~~I~~Dp~Ls~~lL-r~aNS~ 59 (275)
T 3m1t_A 4 SAALLQKVDELPRLPKAIAELLDVVNNED-------STVKAVSEKLSHDPVLSARVL-RLANSA 59 (275)
T ss_dssp CHHHHTTGGGSCCCCHHHHHHHHHHHCTT-------CCHHHHHHHHHTCHHHHHHHH-HHHTTC
T ss_pred HHHHHHhHhhCCCCcHHHHHHHHHHcCCC-------CCHHHHHHHHHHCHHHHHHHH-HHhcch
Confidence 45667776666777777888888876543 455688899999999999999 889987
No 13
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=20.73 E-value=41 Score=31.98 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCcccccccCCCCCChHHHHHhCHHHHHHHHHHhcCCC
Q 014596 256 RGAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVLTKLINSP 323 (422)
Q Consensus 256 ~~~~~r~L~~kA~~~~Lt~~eqq~Ll~~L~~D~~lv~~~glt~~~Lp~LVEnNP~IA~e~L~kL~~s~ 323 (422)
....+++++.+.-+=|--+.-..+|++.+.++. .+..++.++|+..|.++..+| |+.||+
T Consensus 12 ~~~~~~~~l~~~~~lP~~p~~~~~l~~~~~~~~-------~~~~~la~~I~~Dp~Ls~~lL-r~aNS~ 71 (305)
T 3hc1_A 12 RLTLAREFMSGVDELPTVPDIVLRIAGKLNDPD-------VAIDEVADLLLQDQVLTARVV-HLANSP 71 (305)
T ss_dssp HHHHHHHHHHTCSSCCCCCHHHHHHHHHTTCTT-------CCHHHHHHHHTTCHHHHHHHH-HHHHSH
T ss_pred HHHHHHHHHHhhhhCCCChHHHHHHHHHHcCCC-------CCHHHHHHHHHHCHHHHHHHH-HHhccc
Confidence 345688888887767777788888888876533 356688899999999999999 888876
No 14
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=20.40 E-value=1.3e+02 Score=29.46 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcCc---ccccccCCCCCChHHHHHh-CHHHHHHHHHHhcCCCChhHHHHHHh
Q 014596 258 AAVRDLIAKALKGPLLPAQYEQVVVELANDP---KLVYHCGLTPRKLPELVEN-NPLIAVDVLTKLINSPEISEYYTVLV 333 (422)
Q Consensus 258 ~~~r~L~~kA~~~~Lt~~eqq~Ll~~L~~D~---~lv~~~glt~~~Lp~LVEn-NP~IA~e~L~kL~~s~~~~~yld~Lv 333 (422)
..+|+++.+|+-. .....+++.+..+. .+-+--+++|..|-+++.+ .|+++.-+|.+| .+.+.. ++|.
T Consensus 79 ~~~~~~L~~aLg~----~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~EhPQtiAlILs~L-~p~~AA---~vL~ 150 (329)
T 3hjl_A 79 EEFIENIKKVIPP----TLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQL-SPKKSA---EIIQ 150 (329)
T ss_dssp HHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTS-CHHHHH---HHHH
T ss_pred HHHHHHHHHhCCH----HHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHcC-CHHHHH---HHHH
Confidence 4677777776543 34444444443221 1222347888888888876 688887777554 433333 3445
Q ss_pred hCCCChhHHHHHHHHHhccCCcHHHHH---HHHHhhhhhccccchhhhccccchhhHHHHHH
Q 014596 334 NMDMSLHSMEVVNRLTTAVELPKEFVR---MYITNCISSCQNIKDKYMQNRLVRLVCVFLQS 392 (422)
Q Consensus 334 ~m~~Sl~smEvVnrL~t~~~lP~eFi~---~YI~ncI~~Ce~ikDk~~q~R~VRLVCvFlqs 392 (422)
.+|-.. --||+.|+.+--.++++.++ ..+.+|+....+. .+.....|+-|.-.|..
T Consensus 151 ~Lp~~~-r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~--~~~~~gG~~~vA~ILN~ 209 (329)
T 3hjl_A 151 NLPEEL-KKEVVKRIATLENVNVQYVKELAQILLEEISSLGAK--EALKLEGTAVAAELLNT 209 (329)
T ss_dssp TSCHHH-HHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCCHHHHHHHHHHH
T ss_pred hCCHHH-HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccc--cccccccHHHHHHHHhc
Confidence 555444 35999999998888888665 6677777665432 22335667766665544
Done!