Query 014596
Match_columns 422
No_of_seqs 108 out of 120
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 14:25:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zoqc1 a.153.1.1 (C:2065-2111 70.3 0.99 7.2E-05 30.3 1.9 27 265-291 7-33 (47)
2 d1tc3c_ a.4.1.2 (C:) Transposa 26.5 29 0.0021 23.4 3.4 38 326-369 11-48 (51)
3 d1ug3a1 a.118.1.14 (A:1235-142 20.8 51 0.0037 27.4 4.8 22 383-404 61-82 (193)
4 d2nsza1 a.118.1.14 (A:322-450) 18.7 46 0.0034 26.0 3.8 43 354-404 38-80 (129)
5 d1vqra_ a.211.1.3 (A:) Hypothe 17.5 70 0.0051 27.7 5.2 59 259-323 5-64 (286)
6 d1pbya1 a.3.1.7 (A:1-85) Quino 15.9 75 0.0055 23.2 4.2 39 256-300 35-73 (85)
7 d1af7a1 a.58.1.1 (A:11-91) Che 15.6 1.7E+02 0.013 20.2 6.6 69 271-350 11-81 (81)
8 d1juqa_ a.118.9.2 (A:) ADP-rib 15.2 1.2E+02 0.0091 24.0 5.8 77 260-364 3-89 (151)
9 d2f4mb1 a.189.1.1 (B:275-332) 10.8 61 0.0044 22.4 2.1 35 275-315 9-43 (58)
10 d1r8ja1 a.186.1.1 (A:177-282) 10.5 68 0.0049 24.7 2.4 37 270-306 4-41 (106)
No 1
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.29 E-value=0.99 Score=30.34 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=21.7
Q ss_pred HHHHcCCCCHHHHHHHHHHHhcCcccc
Q 014596 265 AKALKGPLLPAQYEQVVVELANDPKLV 291 (422)
Q Consensus 265 ~kA~~~~Lt~~eqq~Ll~~L~~D~~lv 291 (422)
-+..++|=+|.||||++..|+++|.|.
T Consensus 7 l~tLrsP~sP~QQqQvL~ILksNP~lm 33 (47)
T d1zoqc1 7 LRTLKSPSSPQQQQQVLNILKSNPQLM 33 (47)
T ss_dssp HHTCCSCCCHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHcCHHHH
Confidence 367899999999999998777766443
No 2
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=26.51 E-value=29 Score=23.41 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=28.5
Q ss_pred hHHHHHHhhCCCChhHHHHHHHHHhccCCcHHHHHHHHHhhhhh
Q 014596 326 SEYYTVLVNMDMSLHSMEVVNRLTTAVELPKEFVRMYITNCISS 369 (422)
Q Consensus 326 ~~yld~Lv~m~~Sl~smEvVnrL~t~~~lP~eFi~~YI~ncI~~ 369 (422)
..=+|++.++.+|+|.|- ..+.--...|+.||.+=+++
T Consensus 11 ~aqlDVm~~L~~slhema------R~i~rSR~~ir~Yl~~Pl~Y 48 (51)
T d1tc3c_ 11 RAQLDVMKLLNVSLHEMS------RKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp HHHHHHHHHTTCCHHHHH------HHHTCCHHHHHHHHHCSTTT
T ss_pred HHHHHHHHHhCCcHHHHH------HHHHHhHHHHHHHhcChhhc
Confidence 446899999999999873 33445678899999876553
No 3
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.80 E-value=51 Score=27.38 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=18.8
Q ss_pred chhhHHHHHHHHHhcccccccc
Q 014596 383 VRLVCVFLQSLIRNRIIDGENV 404 (422)
Q Consensus 383 VRLVCvFlqsLIrnkii~v~dl 404 (422)
..++|.+++.|++.|+|+..++
T Consensus 61 re~~~~Ll~~L~~~~~is~~~~ 82 (193)
T d1ug3a1 61 REHMGQLLHQLLCAGHLSTAQY 82 (193)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 4789999999999999987643
No 4
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.70 E-value=46 Score=26.00 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHhhhhhccccchhhhccccchhhHHHHHHHHHhcccccccc
Q 014596 354 LPKEFVRMYITNCISSCQNIKDKYMQNRLVRLVCVFLQSLIRNRIIDGENV 404 (422)
Q Consensus 354 lP~eFi~~YI~ncI~~Ce~ikDk~~q~R~VRLVCvFlqsLIrnkii~v~dl 404 (422)
...+||...|+.+|.. ++ ..| +.+++.++..|...|+|+..++
T Consensus 38 ~~~e~V~~~i~~ale~----~~---~~r-~~~~~~Ll~~L~~~~~is~~~i 80 (129)
T d2nsza1 38 FHHELVYEAIVMVLES----TG---ESA-FKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp GHHHHHHHHHHHHHHC----CS---SHH-HHHHHHHHHHHHHTTCSCHHHH
T ss_pred hhHHHHHHHHHHHHhc----CC---HHH-HHHHHHHHHHHHHCCCCCHHHH
Confidence 3445666666655532 21 112 3589999999999999998654
No 5
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]}
Probab=17.49 E-value=70 Score=27.72 Aligned_cols=59 Identities=24% Similarity=0.499 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHhcCcccccccCCCCCChHHHHHhCHHHHHHHHHHhcCCC
Q 014596 259 AVRDLIAKALKG-PLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVLTKLINSP 323 (422)
Q Consensus 259 ~~r~L~~kA~~~-~Lt~~eqq~Ll~~L~~D~~lv~~~glt~~~Lp~LVEnNP~IA~e~L~kL~~s~ 323 (422)
+.++.+.+-.+. |--|.-..++++.++.+. ..+...++.++|+..|.++..+| ++.||+
T Consensus 5 ~~~e~l~~~~~~LP~lP~~~~~l~~~l~~~~-----~~~~~~~la~~I~~Dp~Lta~iL-r~aNS~ 64 (286)
T d1vqra_ 5 DMNELLLKSVEVLPPLPDTVSKLRKYVSEAN-----SNIETMKVAEIISSDPLMTAKLL-QLANSP 64 (286)
T ss_dssp HHHHHHHHHTSSCCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHHTCHHHHHHHH-HHHTSG
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHcCCC-----CCCCHHHHHHHHHHCHHHHHHHH-HHhCch
Confidence 455555555554 666777788888776654 11222257799999999999999 788986
No 6
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=15.92 E-value=75 Score=23.20 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCcccccccCCCCCC
Q 014596 256 RGAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRK 300 (422)
Q Consensus 256 ~~~~~r~L~~kA~~~~Lt~~eqq~Ll~~L~~D~~lv~~~glt~~~ 300 (422)
.|...-.=|.+++.-+|+++|.+.++.+|. .+.|+.|..
T Consensus 35 ~W~~~V~~M~~~~Ga~l~~~e~~~Iv~YLa------~~yG~~p~e 73 (85)
T d1pbya1 35 GWDMTVTRMMRNHGVALEPEERAAIVRHLS------DTRGLSLAE 73 (85)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHHHHH------HHSCCCSGG
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------HHcCCCccc
Confidence 355555567788888999999999999874 456777654
No 7
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=15.59 E-value=1.7e+02 Score=20.17 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHhcCcccccccCCCC--CChHHHHHhCHHHHHHHHHHhcCCCChhHHHHHHhhCCCChhHHHHHHHH
Q 014596 271 PLLPAQYEQVVVELANDPKLVYHCGLTP--RKLPELVENNPLIAVDVLTKLINSPEISEYYTVLVNMDMSLHSMEVVNRL 348 (422)
Q Consensus 271 ~Lt~~eqq~Ll~~L~~D~~lv~~~glt~--~~Lp~LVEnNP~IA~e~L~kL~~s~~~~~yld~Lv~m~~Sl~smEvVnrL 348 (422)
+|++++-+.+...+. .++|+.- .|-. +|+.- |+.-+ +...-..+.+|++.|.+-+-...--++||.|
T Consensus 11 ~lsd~~f~~~~~~i~------~~~Gi~l~~~K~~-~l~~R--L~~rm--~~~g~~s~~~Y~~~L~~~~~~~e~~~li~~l 79 (81)
T d1af7a1 11 ALSDAHFRRICQLIY------QRAGIVLADHKRD-MVYNR--LVRRL--RALGLDDFGRYLSMLEANQNSAEWQAFINAL 79 (81)
T ss_dssp CCCHHHHHHHHHHHH------HHHCCCCCGGGHH-HHHHH--HHHHH--HHHTCCCHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH------HHhCCCCchhhHH-HHHHH--HHHHH--HHhCCCCHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 577888777776653 3455543 3332 22221 22211 2235667999999999844323345788887
Q ss_pred Hh
Q 014596 349 TT 350 (422)
Q Consensus 349 ~t 350 (422)
||
T Consensus 80 TT 81 (81)
T d1af7a1 80 TT 81 (81)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 8
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.18 E-value=1.2e+02 Score=23.96 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCcccccccCCCCCChHHHHHhC---HHHHHHHHHHhcCCCChhHHHHHHhhCC
Q 014596 260 VRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENN---PLIAVDVLTKLINSPEISEYYTVLVNMD 336 (422)
Q Consensus 260 ~r~L~~kA~~~~Lt~~eqq~Ll~~L~~D~~lv~~~glt~~~Lp~LVEnN---P~IA~e~L~kL~~s~~~~~yld~Lv~m~ 336 (422)
+..++.||-...|+..+-..+++.- ++|... |.-|...|.|-++++.-+.
T Consensus 3 le~~i~kAT~~~l~~~dw~~ileic------------------D~In~~~~~~k~a~rai~krl~~~~~~~--------- 55 (151)
T d1juqa_ 3 LESWLNKATNPSNRQEDWEYIIGFC------------------DQINKELEGPQIAVRLLAHKIQSPQEWE--------- 55 (151)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHH------------------HHHHHSTTHHHHHHHHHHHHHTCSSHHH---------
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHH------------------HHHhcCCccHHHHHHHHHHHHcCCCHHH---------
Confidence 4568899999999888777776543 666555 5666666766666664332
Q ss_pred CChhHHHHHHHHHhccC-------CcHHHHHHHHH
Q 014596 337 MSLHSMEVVNRLTTAVE-------LPKEFVRMYIT 364 (422)
Q Consensus 337 ~Sl~smEvVnrL~t~~~-------lP~eFi~~YI~ 364 (422)
-+.+++++..+..... .-.+|++..+.
T Consensus 56 -~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~k 89 (151)
T d1juqa_ 56 -ALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK 89 (151)
T ss_dssp -HHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHH
Confidence 2446777766666432 24567765443
No 9
>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.76 E-value=61 Score=22.43 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCcccccccCCCCCChHHHHHhCHHHHHHH
Q 014596 275 AQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDV 315 (422)
Q Consensus 275 ~eqq~Ll~~L~~D~~lv~~~glt~~~Lp~LVEnNP~IA~e~ 315 (422)
.+-+++...+.++|.++ +.-|..+-..||.++..+
T Consensus 9 PqFq~lR~~vq~nP~~L------~~lLqql~~~NP~L~q~I 43 (58)
T d2f4mb1 9 PQFQQMRQIIQQNPSLL------PALLQQIGRENPQLLQQI 43 (58)
T ss_dssp HHHHHHHHHHHHCGGGH------HHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHCHHHH------HHHHHHHHhhCHHHHHHH
Confidence 44566666677777666 445666667777766443
No 10
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=10.51 E-value=68 Score=24.70 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHhcCcc-cccccCCCCCChHHHHH
Q 014596 270 GPLLPAQYEQVVVELANDPK-LVYHCGLTPRKLPELVE 306 (422)
Q Consensus 270 ~~Lt~~eqq~Ll~~L~~D~~-lv~~~glt~~~Lp~LVE 306 (422)
+.|++.|+|.|++.|++|.+ ++-+..=++..+-.-++
T Consensus 4 r~L~p~ErqeLL~~Lk~~YR~IlLsYF~~d~~~nq~id 41 (106)
T d1r8ja1 4 RNLPAYESQKLHQAMQTSYREIVLSYFSPNSNLNQSID 41 (106)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 57899999999999999983 44444455554444444
Done!