BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014597
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 34/228 (14%)
Query: 135 DGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFDEND---SGSVFFGDQGPATQQ 184
DGV+G+G +G V+ +L++ L + FS+ ++ G V G P Q
Sbjct: 122 DGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVLGGSDPQHYQ 181
Query: 185 STSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQALVDSGASFTFLPTEIYAEVVVKFD 243
K D++ + ++ +G+S L + G + +VD+G+SF PT
Sbjct: 182 GDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPT----------- 230
Query: 244 KLVSSKRISLQGNSWK----YCYNASSEEMLKVPDMRL-IFSKNQSFVVRNHIFSFPENE 298
SS ++ +Q K + Y S ++ +PD+ + + + +++ +P
Sbjct: 231 ---SSLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRR 287
Query: 299 G----FTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 342
+ + + G ++G F+ FDR N ++ ++ ++
Sbjct: 288 DKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALAR 335
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
Query: 75 PCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAP 134
PC ++G L + + P S V V+ C + + L +
Sbjct: 81 PCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVSEVNVRVLAACAPSKLLASLPRGS- 139
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGD---QGPATQQSTSFLPI 191
GV GL +++PS +A A + N F +C G FG P QS + P+
Sbjct: 140 TGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPL 199
Query: 192 GEK--YDAYFVGVESYCIGNSCLTQSGFQALVDSGA------SFTFLPTEIYAEVVVKFD 243
K A+++ S + N+ + S +AL G + L ++Y +V F
Sbjct: 200 VAKGGSPAHYISARSIKVENTRVPIS-ERALATGGVMLSTRLPYVLLRRDVYRPLVDAFT 258
Query: 244 KLVSSK 249
K ++++
Sbjct: 259 KALAAQ 264
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 35/239 (14%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFDEN- 168
I G + GS+L A DG++GL +S L GL+ Q+ FS+ N
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND 159
Query: 169 DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALVDSG 224
DSGSV G S +++P+ E Y + + ++S + G + G QA+VD+G
Sbjct: 160 DSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIVDTG 217
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ- 283
S PT A + +S + S + +PD+ + Q
Sbjct: 218 TSLLTGPTSAIANIQSDIGASENSDGEMV----------ISCSSIASLPDIVFTINGVQY 267
Query: 284 -----SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
++++++ EG + V ++ G+ I+G F+ + VFDR N K+
Sbjct: 268 PLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 18/204 (8%)
Query: 146 SVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPATQQSTSFLPIGEKYDAYF-VG 201
+VP L K G+I +N++S+ + D +G + FG A + S S + + D +
Sbjct: 139 NVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNA-KYSGSLIALPVTSDRELRIS 197
Query: 202 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNS-WKY 260
+ S + + L+DSG + T+L ++ +++ F+ ++ GNS ++
Sbjct: 198 LGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDS---NGNSFYEV 254
Query: 261 CYNASSEEMLKVPDMRLIFSKNQSFVVRNHIF--SFPENEGFTVFCLTVMSTDGDYGIIG 318
N S D+ FSKN V F S ++G ++ D I+G
Sbjct: 255 DCNLSG-------DVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDANILG 307
Query: 319 QNFMMGHRIVFDRENLKLAWSHSK 342
NF+ IV+D ++ +++ + K
Sbjct: 308 DNFLRSAYIVYDLDDNEISLAQVK 331
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 35/239 (14%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFDEND 169
I G + GS+L A DG++GL +S L GL+ Q+ FS+ ND
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND 159
Query: 170 -SGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALVDSG 224
SGSV G S +++P+ E Y + + ++S + G + G QA+VD+G
Sbjct: 160 DSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIVDTG 217
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ- 283
S PT A + S + + + + + SS + L PD+ + Q
Sbjct: 218 TSLLTGPTSAIANI--------QSDIGASENSDGEMVISCSSIDSL--PDIVFTINGVQY 267
Query: 284 -----SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
++++++ EG + V ++ G+ I+G F+ + VFDR N K+
Sbjct: 268 PLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFDEN- 168
I G + GS+L A DG++GL +S L GL+ Q+ FS+ N
Sbjct: 144 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND 203
Query: 169 DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALVDSG 224
DSGSV G S +++P+ E Y + + ++S + G + G QA+VD+G
Sbjct: 204 DSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIVDTG 261
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ- 283
S PT A + S + + + + + SS + L PD+ Q
Sbjct: 262 TSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSSIDSL--PDIVFTIDGVQY 311
Query: 284 -----SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
++++++ EG + V ++ G+ I+G F+ + VFDR N K+
Sbjct: 312 PLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 365
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 135 DGVMGLGLGDVSVP---SLLAKAGLIQNSFSICF----DENDSGSVFFGDQGPAT-QQST 186
DG++GL +SVP ++L + + + FS DE + G + FG P +
Sbjct: 120 DGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 187 SFLPIGEKYDAYFVGVESYCIGN--SCLTQSGFQALVDSGASFTFLPTEIYAEV 238
+++P+ +Y F G+ IG+ + G QA DSG S PT I ++
Sbjct: 180 TYVPVTYQYYWQF-GIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFDEN- 168
I G + GS+L A DG++GL +S L GL+ Q+ FS+ N
Sbjct: 144 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND 203
Query: 169 DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALVDSG 224
DSGSV G S +++P+ E Y + + ++S + G + G QA+VD+G
Sbjct: 204 DSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIVDTG 261
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ- 283
S PT A + S + + + + + SS + L PD+ Q
Sbjct: 262 TSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSSIDSL--PDIVFTIDGVQY 311
Query: 284 -----SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
++++++ EG + V ++ G+ I+G F+ + VFDR N K+
Sbjct: 312 PLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 365
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 35/239 (14%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFDEND 169
I G + GS+L A DG++GL +S L GL+ Q+ FS+ ND
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND 159
Query: 170 -SGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALVDSG 224
SGSV G S +++P+ E Y + + ++S + G + G QA+VD+G
Sbjct: 160 DSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIVDTG 217
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ- 283
S PT A + S + + + + + SS + L PD+ + Q
Sbjct: 218 TSLLTGPTSAIANI--------QSDIGASENSDGEMVISCSSIDSL--PDIVFTINGVQY 267
Query: 284 -----SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
++++++ EG + V ++ G+ I+G F+ + VFDR N K+
Sbjct: 268 PLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFDEN- 168
I G + GS+L A DG++GL +S L GL+ Q+ FS+ N
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND 159
Query: 169 DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALVDSG 224
DSGSV G S +++P+ E Y + + ++S + G + G QA+VD+G
Sbjct: 160 DSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIVDTG 217
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ- 283
S PT A + S + + + + + SS + L PD+ Q
Sbjct: 218 TSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSSIDSL--PDIVFTIDGVQY 267
Query: 284 -----SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
++++++ EG + V ++ G+ I+G F+ + VFDR N K+
Sbjct: 268 PLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSL------LAKAGLI-QNSFSICFDEN- 168
I G + GS+L A DG++GL +S L GL+ Q+ FS+ N
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND 159
Query: 169 DSGSVFF--GDQGPATQQSTSFLPIG-EKYDAYFVGVESYCI-GNSCLTQSGFQALVDSG 224
DSGSV G S +++P+ E Y + + ++S + G + G QA+VD+G
Sbjct: 160 DSGSVVLLGGIDSSYYTGSLNWVPVSVEGY--WQITLDSITMDGETIACSGGCQAIVDTG 217
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQ- 283
S PT A + S + + + + + SS + L PD+ Q
Sbjct: 218 TSLLTGPTSAIAN--------IQSDIGASENSDGEMVISCSSIDSL--PDIVFTIDGVQY 267
Query: 284 -----SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
++++++ EG + V ++ G+ I+G F+ + VFDR N K+
Sbjct: 268 PLSPSAYILQDDDSCTSGFEG-----MDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 25/234 (10%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLAKAGLI-QNSFSICFDEND 169
I G + GS+L A DG++GL +S V + GL+ Q+ FS+ +D
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADD 159
Query: 170 -SGSV--FFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCI-GNSCLTQSGFQALVDSG 224
SGSV F G S +++P+ + Y+ + V+S + G + G QA+VD+G
Sbjct: 160 QSGSVVIFGGIDSSYYTGSLNWVPV--TVEGYWQITVDSITMNGEAIACAEGCQAIVDTG 217
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQS 284
S PT A + +S G+ C SS +PD+ + Q
Sbjct: 218 TSLLTGPTSPIANIQSDIGASENSD-----GDMVVSCSAISS-----LPDIVFTINGVQY 267
Query: 285 FVVRNHIFSFPENEGFTVF-CLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
V + E + F + V + G+ I+G F+ + VFDR N ++
Sbjct: 268 PVPPSAYILQSEGSCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQVG 321
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 108 PQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE 167
P S V V+ C + + L + GV GL +++P+ +A A + N F +C
Sbjct: 112 PVSKVNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPT 170
Query: 168 NDSGSVFFGD---QGPATQQSTSFLPIGEK--YDAYFVGVESYCIGNS-------CLTQS 215
G FG P QS + P+ K A+++ S +G++ L
Sbjct: 171 GGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG 230
Query: 216 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSK 249
G ++ + + L ++Y ++ F K ++++
Sbjct: 231 GV--MLSTRLPYVLLRPDVYRPLMDAFTKALAAQ 262
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 108 PQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE 167
P S V V+ C + + L + GV GL +++P+ +A A + N F +C
Sbjct: 112 PVSKVNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPT 170
Query: 168 NDSGSVFFGD---QGPATQQSTSFLPIGEK--YDAYFVGVESYCIGNS-------CLTQS 215
G FG P QS + P+ K A+++ S +G++ L
Sbjct: 171 GGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG 230
Query: 216 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSK 249
G ++ + + L ++Y ++ F K ++++
Sbjct: 231 GV--MLSTRLPYVLLRPDVYRPLMDAFTKALAAQ 262
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 25/234 (10%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLAKAGLI-QNSFSICFDEND 169
I G + GS+L A DG++GL +S V + GL+ Q+ FS+ +D
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADD 159
Query: 170 -SGSV--FFGDQGPATQQSTSFLPIGEKYDAYF-VGVESYCI-GNSCLTQSGFQALVDSG 224
SGSV F G S +++P+ + Y+ + V+S + G + G QA+VD+G
Sbjct: 160 QSGSVVIFGGIDSSYYTGSLNWVPV--TVEGYWQITVDSITMNGEAIACAEGCQAIVDTG 217
Query: 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQS 284
S PT A + +S G+ C SS +PD+ + Q
Sbjct: 218 TSLLTGPTSPIANIQSDIGASENSD-----GDMVVSCSAISS-----LPDIVFTINGVQY 267
Query: 285 FVVRNHIFSFPENEGFTVF-CLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLA 337
V + E + F + + + G+ I+G F+ + VFDR N ++
Sbjct: 268 PVPPSAYILQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVG 321
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 18/204 (8%)
Query: 146 SVPSLLAKAGLI-QNSFSICFDENDS--GSVFFGDQGPATQQSTSFLPIGEKYDAYF-VG 201
+VP L K G+I +N++S+ + DS G + FG A + S S + + D +
Sbjct: 139 NVPVTLKKQGVIAKNAYSLYLNSPDSATGQIIFGGVDNA-KYSGSLIALPVTSDRELRIS 197
Query: 202 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNS-WKY 260
+ S + + L+DSG + T+L ++ +++ F+ ++ GNS ++
Sbjct: 198 LGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDS---NGNSFYEV 254
Query: 261 CYNASSEEMLKVPDMRLIFSKNQSFVVRNHIF--SFPENEGFTVFCLTVMSTDGDYGIIG 318
N S D+ FSKN V F S ++G ++ I+G
Sbjct: 255 DCNLSG-------DVVFNFSKNAKISVPASDFAASTQGDDGQPYDKCQLLFDVNKANILG 307
Query: 319 QNFMMGHRIVFDRENLKLAWSHSK 342
NF+ IV+D ++ +++ + K
Sbjct: 308 DNFLRSAYIVYDLDDNEISIAQVK 331
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 33/245 (13%)
Query: 117 IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV-------PSLLAKAGLIQNSFSICF---- 165
+ G KQ G A DG++G+ +SV +L+ + + QN FS
Sbjct: 9 VFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDP 68
Query: 166 DENDSGSVFF-GDQGPATQQSTSFLPIGEKYDAYF-VGVESYCIGNS-CLTQSGFQALVD 222
D G + G + S S+L + K AY+ V ++ + + L + G +A+VD
Sbjct: 69 DAQPGGELMLGGTDSKYYKGSLSYLNVTRK--AYWQVHLDQVEVASGLTLCKEGCEAIVD 126
Query: 223 SGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN 282
+G S P + V + K + + + +QG Y E++ +P + L
Sbjct: 127 TGTSLMVGPV----DEVRELQKAIGAVPL-IQGE-----YMIPCEKVSTLPAITLKLG-G 175
Query: 283 QSFVVRNHIFSFPENEGFTVFCLT-VMSTD-----GDYGIIGQNFMMGHRIVFDRENLKL 336
+ + + ++ ++ CL+ M D G I+G F+ + VFDR+N ++
Sbjct: 176 KGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRV 235
Query: 337 AWSHS 341
++ +
Sbjct: 236 GFAEA 240
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 194
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 121 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 173
Query: 195 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 239
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 174 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 231
Query: 240 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 299
D + ++ C N+ K+P + + + E+ G
Sbjct: 232 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 281
Query: 300 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 342
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 282 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 326
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 194
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 121 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 173
Query: 195 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 239
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 174 EERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEKA--NCIVDSGTSAITVPTDFLNKML 231
Query: 240 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 299
D + ++ C N+ K+P + + + E+ G
Sbjct: 232 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 281
Query: 300 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 342
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 282 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 326
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE--NDSGSVFFGD 177
GV GLG +S+P+ LA +Q F+ C G++ FGD
Sbjct: 156 QGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD 200
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 194
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 123 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 175
Query: 195 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 239
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 176 EERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEKA--NCIVDSGTSAITVPTDFLNKML 233
Query: 240 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 299
D + ++ C N+ K+P + + + E+ G
Sbjct: 234 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 283
Query: 300 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 342
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 284 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 328
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 194
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 123 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 175
Query: 195 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 239
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 176 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 233
Query: 240 VKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 299
D + ++ C N+ K+P + + + E+ G
Sbjct: 234 QNLDVI----KVPFLPFYVTLCNNS------KLPTFEFTSENGKYTLEPEYYLQHIEDVG 283
Query: 300 FTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 342
+ L ++ D I+G FM + VFD +N + + +K
Sbjct: 284 PGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 328
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 194
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 245 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 297
Query: 195 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 239
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 298 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 355
Query: 240 VKFD 243
D
Sbjct: 356 QNLD 359
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 194
DG++GLG D+S+ S+ ++N +N + F P + T FL IG
Sbjct: 172 DGILGLGWKDLSIGSVDPIVVELKN-------QNKIENALFTFYLPVHDKHTGFLTIGGI 224
Query: 195 YDAYFVGVESY---------------CIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 239
+ ++ G +Y +GN L ++ +VDSG S +PT+ +++
Sbjct: 225 EERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKA--NCIVDSGTSAITVPTDFLNKML 282
Query: 240 VKFD 243
D
Sbjct: 283 QNLD 286
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 183 QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKF 242
+ S + +PI + + V+ +G S + S F ++D+G + LP I A V +
Sbjct: 180 KGSLTTVPIDNSRGWWGITVDRATVGTSTVASS-FDGILDTGTTLLILPNNIAASVARAY 238
Query: 243 DKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN-QSFVVRNHIFSFPENEGFT 301
S G+ Y S + P L+FS N SF V F E +G
Sbjct: 239 GA-------SDNGDG---TYTISCDTSRFKP---LVFSINGASFQVSPDSLVFEEFQG-- 283
Query: 302 VFCLTVMS-TDGDYGIIGQNFMMGHRIVFDR 331
C+ + D+ IIG F+ + +VF++
Sbjct: 284 -QCIAGFGYGNWDFAIIGDTFLKNNYVVFNQ 313
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 36/244 (14%)
Query: 118 IGCGRKQTGSYLDGAAPDGVMGLGL------GDV-SVPSLLAKAGLI-QNSFSICFDEND 169
I ++Q + G++G+G G+ +VP L G+I +N++S+ +
Sbjct: 103 ISITKQQFADVTSTSVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQ 162
Query: 170 --SGSVFFGDQGPATQQSTSF-LPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGAS 226
SG + FG A T LP+ + G S + L+DSG +
Sbjct: 163 ATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSI--NADVDVLLDSGTT 220
Query: 227 FTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVP-----DMRLIFSK 281
T+L + +V+ F+ + Y+A+ V + F K
Sbjct: 221 ITYLQQGVADQVISAFNG--------------QETYDANGNLFYLVDCNLSGSVDFAFDK 266
Query: 282 NQSFVVRNHIFSFP-ENEGFTVF--CLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAW 338
N V F+ P E V+ C + T DY I+G NF+ IV+D ++ +++
Sbjct: 267 NAKISVPASEFTAPLYTEDGQVYDQCQLLFGT-SDYNILGDNFLRSAYIVYDLDDNEISL 325
Query: 339 SHSK 342
+ K
Sbjct: 326 AQVK 329
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 45/244 (18%)
Query: 118 IGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGL--IQNSFSICFDENDSGSVFF 175
+G + + G + A DG++GL + PS+ A + N S E D S +
Sbjct: 101 LGESQTEPGPFQAAAPFDGILGL-----AYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYL 155
Query: 176 GDQGPATQQ-------------STSFLPI-GEKYDAYFVGVESYCIGNSCLTQSGFQALV 221
G + S ++P+ EKY + V ++ + G QA+V
Sbjct: 156 SGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKY--WQVALDGITVNGQTAACEGCQAIV 213
Query: 222 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 281
D+G S P A ++ K I N + N +S + L PD+ +
Sbjct: 214 DTGTSKIVAPVSALANIM---------KDIGASENQGEMMGNCASVQSL--PDITFTING 262
Query: 282 NQSFVVRNHIFSFPENEGFTVFCLTVMSTDG------DYGIIGQNFMMGHRIVFDRENLK 335
V+ + EG FC + + + G + I G F+ + ++DR N K
Sbjct: 263 -----VKQPLPPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNK 317
Query: 336 LAWS 339
+ ++
Sbjct: 318 VGFA 321
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 108/271 (39%), Gaps = 34/271 (12%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 95 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 152
Query: 158 QNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK--YDAYFVGVE--SYCIGNSCLT 213
N FS+ S + D T S + PI + Y+ V VE + C
Sbjct: 153 PNLFSLQLCGGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVRVEINGQDLKMDCKE 211
Query: 214 QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---NSWKYCYNASSEEML 270
+ +++VDSG + LP +++ E VK K SS G C+ A +
Sbjct: 212 YNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWN 270
Query: 271 KVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMSTDGDYG-IIGQNFM 322
P + L NQSF + + ++ + C + G ++G M
Sbjct: 271 IFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIM 330
Query: 323 MGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
G +VFDR ++ ++ S C HVH
Sbjct: 331 EGFYVVFDRARKRIGFAVSAC-------HVH 354
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 38/224 (16%)
Query: 136 GVMGLG---------LGDVSVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPATQ 183
G+MG+G L D +VP L K G+I +N++S+ + D +G + FG A
Sbjct: 122 GIMGIGFTADEAGYNLYD-NVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKY 180
Query: 184 QST-SFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKF 242
T + LP+ + G S T + ++DSG + T+ F
Sbjct: 181 TGTLTALPVTSSVELRVHLGSINFDGTSVSTNA--DVVLDSGTTITY------------F 226
Query: 243 DKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRL----IFSKNQSFVVRNHIFSFPENE 298
+ + K + G +W S E+ ++P L +F+ +Q + + +
Sbjct: 227 SQSTADKFARIVGATWD-----SRNEIYRLPSCDLSGDAVFNFDQGVKITVPLSELILKD 281
Query: 299 GFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 342
+ C +S + D I+G NF+ IV+D ++ ++ + K
Sbjct: 282 SDSSICYFGISRN-DANILGDNFLRRAYIVYDLDDKTISLAQVK 324
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 51/248 (20%)
Query: 136 GVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGS--VFFGDQGPAT--------QQS 185
G+ GLG +++PS A A + F++C + S + + FG+ P T ++
Sbjct: 153 GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGND-PYTFLPNIIVSDKT 211
Query: 186 TSFLPI-------------GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGAS------ 226
++ P+ GE YF+GV+S I NS + L S A
Sbjct: 212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKI-NSKIVALNTSLLSISSAGLGGTKI 270
Query: 227 -----FTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEML------KVPDM 275
+T L T IY V F K +++ I+ + + S++ +L VP +
Sbjct: 271 STINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSI 330
Query: 276 RLIFSKNQ---SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRE 332
L+ + N + +N V CL V+ DG + + GH++ +
Sbjct: 331 DLVLQSESVVWTITGSNSMVYINDN----VVCLGVV--DGGSNLRTSIVIGGHQLEDNLV 384
Query: 333 NLKLAWSH 340
LA S
Sbjct: 385 QFDLATSR 392
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 51/248 (20%)
Query: 136 GVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGS--VFFGDQGPAT--------QQS 185
G+ GLG +++PS A A + F++C + S + + FG+ P T ++
Sbjct: 153 GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGND-PYTFLPNIIVSDKT 211
Query: 186 TSFLPI-------------GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGAS------ 226
++ P+ GE YF+GV+S I NS + L S A
Sbjct: 212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKI-NSKIVALNTSLLSISSAGLGGTKI 270
Query: 227 -----FTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEML------KVPDM 275
+T L T IY V F K +++ I+ + + S++ +L VP +
Sbjct: 271 STINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSI 330
Query: 276 RLIFSKNQ---SFVVRNHIFSFPENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRE 332
L+ + N + +N V CL V+ DG + + GH++ +
Sbjct: 331 DLVLQSESVVWTITGSNSMVYINDN----VVCLGVV--DGGSNLRTSIVIGGHQLEDNLV 384
Query: 333 NLKLAWSH 340
LA S
Sbjct: 385 QFDLATSR 392
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 112 VQSSVIIGCGRKQTGSYLDGAAPDGVMGLGL----GDVSVP---SLLAKAGLIQNSFSIC 164
V + +G +Q G + DG++GL + SVP +++ + + ++ FS+
Sbjct: 94 VDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVY 153
Query: 165 FDENDSGSVF-FGDQGPATQQ-STSFLPIG-EKYDAYFV------GVESYCIGNSCLTQS 215
D N GS+ G P+ S ++P+ ++Y + V GV C+G
Sbjct: 154 MDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVACVG------- 206
Query: 216 GFQALVDSGASFTFLPT 232
G QA++D+G S F P+
Sbjct: 207 GCQAILDTGTSVLFGPS 223
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 26/223 (11%)
Query: 134 PDGVMGLGL------GDV-SVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPATQ 183
P G++G+G GD +VP L G+I +N++S+ + + +G + FG A
Sbjct: 120 PQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNAATGQIIFGGVDKAKY 179
Query: 184 QSTSF-LPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKF 242
+ +P+ + +G + L+DSG + T+L ++ +++ F
Sbjct: 180 SGSLIAVPVTSDRELRITLNSLKAVGKNI--NGNIDVLLDSGTTITYLQQDVAQDIIDAF 237
Query: 243 DKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFP---ENEG 299
+ L+ + + + + + D F N V F+ P N
Sbjct: 238 -------QAELKSDGQGHTFYVTDCQTSGTVDFN--FDNNAKISVPASEFTAPLSYANGQ 288
Query: 300 FTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 342
C ++ D I+G NF+ +V+D ++ K++ + K
Sbjct: 289 PYPKCQLLLGI-SDANILGDNFLRSAYLVYDLDDDKISLAQVK 330
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 21/152 (13%)
Query: 183 QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKF 242
+ S + +PI + + V+ +G S + S F ++D+G + LP I A V +
Sbjct: 180 KGSLTTVPIDNSRGWWGITVDRATVGTSTVASS-FDGILDTGTTLLILPNNIAASVARAY 238
Query: 243 DKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN-QSFVVRNHIFSFPENEGFT 301
S G+ Y S + P L+FS N SF V F E +G
Sbjct: 239 GA-------SDNGDG---TYTISCDTSAFKP---LVFSINGASFQVSPDSLVFEEFQG-- 283
Query: 302 VFCLTVMSTDGDYG--IIGQNFMMGHRIVFDR 331
C+ G++G IIG F+ + +VF++
Sbjct: 284 -QCIAGFGY-GNWGFAIIGDTFLKNNYVVFNQ 313
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 33/217 (15%)
Query: 135 DGVMGLGLGDVSVPSL-------LAKAGLIQNSFSICF------DENDSGSVFFGDQGPA 181
DG++GLG +SV + + + L + F+ EN + F G
Sbjct: 119 DGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESK 178
Query: 182 TQQSTSFLPIGEKYDAYF-VGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVV 240
+ ++LP+ K AY+ V E +G+ A +D+G S LP+ +
Sbjct: 179 FKGDITWLPVRRK--AYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGL------ 230
Query: 241 KFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN-QSFVVRNHIFSFPENEG 299
++++++ + +G++ +Y + ++ + L PD LIF+ N +F + + ++ E G
Sbjct: 231 --AEMINAEIGAKKGSTGQYTLDCNTRDNL--PD--LIFNFNGYNFTIGPYDYTL-EVSG 283
Query: 300 FTVFCLTVMSTD---GDYGIIGQNFMMGHRIVFDREN 333
+ +T M G I+G F+ + ++D N
Sbjct: 284 SCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGN 320
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 110 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 167
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 168 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 226
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 227 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 285
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 286 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 345
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 346 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 383
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 280
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 281 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 340
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 341 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 90 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 147
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 148 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 206
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 207 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 265
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 266 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 325
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 326 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 363
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 110 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 167
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 168 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 226
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 227 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 285
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 286 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 345
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 346 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 383
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 108 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 165
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 166 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 224
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 225 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 283
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 284 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 343
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 344 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 381
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 112 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 169
Query: 158 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 170 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 228
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 229 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 287
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 288 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 347
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 348 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 385
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 108 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 165
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 166 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 224
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 225 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 283
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 284 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 343
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 344 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 381
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 107 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 164
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 165 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 223
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 224 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 282
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 283 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 342
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 343 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 380
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 98 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 155
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 156 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 214
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 273
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 274 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 333
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 334 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 371
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 129 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 186
Query: 158 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 187 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 245
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 246 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 304
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 305 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 364
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 365 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 402
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 108 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 165
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 166 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 224
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 225 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 283
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 284 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 343
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 344 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 381
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 280
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 281 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 340
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 341 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 158 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 280
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 281 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 340
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 341 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 129 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 186
Query: 158 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 187 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 245
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 246 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 304
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 305 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 364
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 365 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 402
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 94 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 151
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 152 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 210
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 211 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 269
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 270 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 329
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 330 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 367
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 98 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 155
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 156 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 214
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 273
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 274 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 333
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 334 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 371
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 95 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 152
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 153 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 211
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 270
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 271 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 330
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 331 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 368
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 95 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 152
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 153 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 211
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 270
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 271 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 330
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 331 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 368
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 92 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 149
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 150 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 208
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 209 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 267
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 268 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 327
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 328 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 365
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 106 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 163
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 164 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 222
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 223 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 281
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 282 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 341
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 342 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 379
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 280
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 281 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 340
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 341 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 118 IGCGRKQTGSYLDGAAPDGVMGLGLGDVSV-PSLLAKAGLIQNS------FSICFDE--- 167
G + G+ A DG+MGL +SV + A G++Q FS+
Sbjct: 101 FGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQG 160
Query: 168 NDSGSVFFG--DQGPATQQSTSFLPIGEKYDAYFVGVESYCIGN--SCLTQSGFQALVDS 223
+ G+V FG D T Q + P+ ++ + +G+E + IG S G QA+VD+
Sbjct: 161 SSGGAVVFGGVDSSLYTGQ-IYWAPVTQEL-YWQIGIEEFLIGGQASGWCSEGCQAIVDT 218
Query: 224 GASFTFLPTE 233
G S +P +
Sbjct: 219 GTSLLTVPQQ 228
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 115 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 172
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 173 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 231
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 232 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 290
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 291 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 350
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 351 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 388
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 95 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 152
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 153 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 211
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 212 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 270
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 271 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 330
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 331 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 368
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 151 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 208
Query: 158 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 209 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 267
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 268 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 326
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 327 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 386
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 387 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 424
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 152 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 209
Query: 158 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 210 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 268
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 269 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 327
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 328 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 387
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 388 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 425
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSCGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 93 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 150
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 151 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 209
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 210 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 268
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 269 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 328
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 329 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 366
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 152 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 209
Query: 158 QNSFSI-----CFDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ F N S GS+ G D T S + PI + Y+ V
Sbjct: 210 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 268
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 269 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 327
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 328 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 387
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 388 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 425
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 96 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 153
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 154 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 212
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 213 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 271
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 272 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 331
Query: 310 TDGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 332 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 369
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 135 DGVMGLGLGDVSVPSL-------LAKAGLIQNSFSICF------DENDSGSVFFGDQGPA 181
DG++GLG +SV + + + L + F+ EN + F G
Sbjct: 119 DGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESK 178
Query: 182 TQQSTSFLPIGEKYDAYF-VGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVV 240
+ ++LP+ K AY+ V E +G+ A +D+G S LP+ + AE++
Sbjct: 179 FKGDITWLPVRRK--AYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGL-AEMI- 234
Query: 241 KFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN-QSFVVRNHIFSFPENEG 299
+ + +K+ W Y +PD LIF+ N +F + + ++ E G
Sbjct: 235 --NAEIGAKK------GWTGQYTLDCNTRDNLPD--LIFNFNGYNFTIGPYDYTL-EVSG 283
Query: 300 FTVFCLTVMSTD---GDYGIIGQNFMMGHRIVFDREN 333
+ +T M G I+G F+ + ++D N
Sbjct: 284 SCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGN 320
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 42/228 (18%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 194
DG++GLG D+S+ S+ ++N +N F P + +L IG
Sbjct: 128 DGIVGLGWKDLSIGSVDPVVVELKN-------QNKIEQAVFTFYLPFDDKHKGYLTIGGI 180
Query: 195 YDAYFVGVESYCIGN-------------SCLTQSGFQALVDSGASFTFLPTEIYAEVVVK 241
D ++ G +Y N LT A+VDSG S PTE + K
Sbjct: 181 EDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVEKATAIVDSGTSSITAPTEF----LNK 236
Query: 242 FDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRL-----IFSKNQSFVVRNHIFSFPE 296
F + + +I C N K+P + +++ + ++ IF F
Sbjct: 237 FFEGLDVVKIPFLPLYITTCNNP------KLPTLEFRSATNVYTLEPEYYLQ-QIFDF-- 287
Query: 297 NEGFTVFCLTVMSTDGDYG--IIGQNFMMGHRIVFDRENLKLAWSHSK 342
G ++ ++++ D + I+G FM + VFD +N + ++ +K
Sbjct: 288 --GISLCMVSIIPVDLNKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 333
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 135 DGVMGLGLGDVSVPSL-------LAKAGLIQNSFSICF------DENDSGSVFFGDQGPA 181
DG++GLG +SV + + + L + F+ EN + F G
Sbjct: 119 DGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESK 178
Query: 182 TQQSTSFLPIGEKYDAYF-VGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVV 240
+ ++LP+ K AY+ V E +G+ A +D+G S LP+ + AE++
Sbjct: 179 FKGDITWLPVRRK--AYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGL-AEMI- 234
Query: 241 KFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN-QSFVVRNHIFSFPENEG 299
+ + +K+ W Y +PD LIF+ N +F + + ++ E G
Sbjct: 235 --NAEIGAKK------GWTGQYTLDCNTRDNLPD--LIFNFNGYNFTIGPYDYTL-EVSG 283
Query: 300 FTVFCLTVMSTD---GDYGIIGQNFMMGHRIVFDREN 333
+ +T M G I+G F+ + ++D N
Sbjct: 284 SCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGN 320
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 38/230 (16%)
Query: 131 GAAPDGVMGLGLGDVSVPSL------LAKAGLIQN---SFSICFDENDSGSVFFGD---- 177
G+ DG++GLG D+S+ S+ L K I N +F + + G + G
Sbjct: 117 GSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVHDKHVGYLTIGGIESD 176
Query: 178 --QGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 235
+GP T + + +D Y+ G + ++ A+VDSG S PT
Sbjct: 177 FYEGPLTYEKLN-------HDLYWQIDLDIHFGKYVMQKA--NAVVDSGTSTITAPTSF- 226
Query: 236 AEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFP 295
+ KF + ++ ++ C N +P + S+N + + + P
Sbjct: 227 ---LNKFFRDMNVIKVPFLPLYVTTCDNDD------LPTLEF-HSRNNKYTLEPEFYMDP 276
Query: 296 ENEGFTVFCLTVM---STDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 342
++ C+ + D + I+G FM + VFD E + ++ +K
Sbjct: 277 LSDIDPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESVGFAVAK 326
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 219 ALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLI 278
A+ D+G + L EI V + + VS + S + Y ++ S++ +PD ++
Sbjct: 211 AIADTGTTLILLDDEI----VSAYYEQVSGAQESYEAGG--YVFSCSTD----LPDFTVV 260
Query: 279 FSKNQSFVVRNHIFSFPENEGFTVFCLTVMSTDG-DYGIIGQNFMMGHRIVFDRENLKLA 337
++ V +I P + G + + S G I+G F+ +VF+ E KL
Sbjct: 261 IGDYKAVVPGKYINYAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLG 320
Query: 338 WS 339
++
Sbjct: 321 FA 322
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 112/284 (39%), Gaps = 46/284 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 105 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 162
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 163 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 221
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRI--SLQGNS 257
VE + C + +++VDSG + LP +++ V S+++
Sbjct: 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVASIKAASSTEKFPDGFWLGE 281
Query: 258 WKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMST 310
C+ A + P + L NQSF + + ++ + C +
Sbjct: 282 QLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAIS 341
Query: 311 DGDYG-IIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
G ++G M G +VFDR ++ ++ S C HVH
Sbjct: 342 QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 378
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 27/226 (11%)
Query: 132 AAPDGVMGLG-----LGDVS--VPSLLAKAGLIQNSFSICFDEND-SGSVFFGDQGPATQ 183
A DGV+G+G +G V+ +++++ L ++ FS ++ + G + G P
Sbjct: 122 AEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSLGGQIVLGGSDPQHY 181
Query: 184 QSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQALVDSGASFTFLPTEIYAEVVVKF 242
+ K + + ++ +G+S L + G ALVD+GAS+ T +++
Sbjct: 182 EGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLM--- 238
Query: 243 DKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTV 302
+ L + KR+ + Y E +PD+ + + + + + F E+
Sbjct: 239 EALGAKKRL--------FDYVVKCNEGPTLPDISFHLG-GKEYTLTSADYVFQESYSSKK 289
Query: 303 FC-LTVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 342
C L + + D G +G F+ FDR N ++ ++ ++
Sbjct: 290 LCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 335
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 113/285 (39%), Gaps = 48/285 (16%)
Query: 106 HAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVP--SL------LAKAGLI 157
H P +V+++ I + +++G+ +G++GL +++ P SL L K +
Sbjct: 109 HGPNVTVRAN--IAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV 166
Query: 158 QNSFSI--C---FDENDS-------GSVFFG--DQGPATQQSTSFLPIGEK--YDAYFVG 201
N FS+ C F N S GS+ G D T S + PI + Y+ V
Sbjct: 167 PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTG-SLWYTPIRREWYYEVIIVR 225
Query: 202 VE--SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG---N 256
VE + C + +++VDSG + LP +++ E VK K SS G
Sbjct: 226 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF-EAAVKSIKAASSTEKFPDGFWLG 284
Query: 257 SWKYCYNASSEEMLKVPDMRLIFS---KNQSFVV----RNHIFSFPENEGFTVFCLTVMS 309
C+ A + P + L NQSF + + ++ + C
Sbjct: 285 EQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI 344
Query: 310 TDGDYGI-IGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHVH 353
+ G +G M G +VFDR ++ ++ S C HVH
Sbjct: 345 SQSSTGTCMGAVIMEGFYVVFDRARKRIGFAVSAC-------HVH 382
>pdb|1VRW|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1VRW|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1ZSN|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZSN|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZW1|A Chain A, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZW1|B Chain B, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZXB|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXB|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
Length = 336
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 181 ATQQSTSFLPIGEKYDAYFVG-VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 235
A + S + P+ +K + +G V S+ + +G VD+G + FLP +IY
Sbjct: 276 AIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGLNIMFLPDDIY 331
>pdb|2O2Y|A Chain A, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|B Chain B, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|C Chain C, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|D Chain D, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
Length = 349
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 181 ATQQSTSFLPIGEKYDAYFVG-VESYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 235
A + S + P+ +K + +G V S+ + +G VD+G + FLP +IY
Sbjct: 289 AIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGLNIMFLPDDIY 344
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 34/224 (15%)
Query: 135 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 194
DG++GLG D+S+ S+ ++N +N + F P +L IG
Sbjct: 123 DGILGLGWKDLSIGSIDPIVVELKN-------QNKIDNALFTFYLPVHDVHAGYLTIGGI 175
Query: 195 YDAYFVGVESYCIGNSCL-------------TQSGFQALVDSGASFTFLPTEIYAEVVVK 241
+ ++ G +Y N L T +VDSG + P+E
Sbjct: 176 EEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMEKANVIVDSGTTTITAPSEF------- 228
Query: 242 FDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFT 301
+K ++ + Y ++EM P + S N ++ + + P E
Sbjct: 229 LNKFFANLNVIKVPFLPFYVTTCDNKEM---PTLEFK-SANNTYTLEPEYYMNPILEVDD 284
Query: 302 VFCLTVM---STDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 342
C+ M D + I+G FM + VFD + + ++ +K
Sbjct: 285 TLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,929,747
Number of Sequences: 62578
Number of extensions: 422763
Number of successful extensions: 994
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 108
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)